Query 019066
Match_columns 346
No_of_seqs 313 out of 2407
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 2.3E-56 4.9E-61 395.7 16.2 210 69-321 1-238 (240)
2 COG1135 AbcC ABC-type metal io 100.0 7.8E-52 1.7E-56 383.6 15.2 215 70-323 1-246 (339)
3 COG1125 OpuBA ABC-type proline 100.0 2.4E-50 5.1E-55 364.4 13.4 210 70-322 1-239 (309)
4 COG3842 PotA ABC-type spermidi 100.0 1E-49 2.2E-54 382.1 15.8 213 68-325 3-243 (352)
5 COG1117 PstB ABC-type phosphat 100.0 4.4E-50 9.5E-55 354.6 11.8 219 68-320 5-249 (253)
6 COG1124 DppF ABC-type dipeptid 100.0 7.5E-48 1.6E-52 347.3 16.9 216 69-324 2-247 (252)
7 KOG0058 Peptide exporter, ABC 100.0 2E-48 4.3E-53 393.8 13.2 230 48-314 436-697 (716)
8 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-47 2.5E-52 344.9 16.1 213 68-320 6-246 (263)
9 COG3839 MalK ABC-type sugar tr 100.0 1.8E-47 4E-52 364.7 17.1 209 69-324 2-239 (338)
10 COG1116 TauB ABC-type nitrate/ 100.0 1.9E-46 4.2E-51 340.4 19.3 211 69-331 2-243 (248)
11 COG2274 SunT ABC-type bacterio 100.0 8.6E-48 1.9E-52 399.9 9.5 224 48-309 441-697 (709)
12 COG0444 DppD ABC-type dipeptid 100.0 7.2E-46 1.6E-50 347.3 17.3 230 70-325 1-260 (316)
13 COG1118 CysA ABC-type sulfate/ 100.0 1E-45 2.2E-50 342.2 14.4 211 70-326 2-245 (345)
14 COG1136 SalX ABC-type antimicr 100.0 9.1E-45 2E-49 328.5 17.3 192 70-298 1-221 (226)
15 COG4175 ProV ABC-type proline/ 100.0 8E-45 1.7E-49 337.0 14.7 220 69-323 3-269 (386)
16 COG1120 FepC ABC-type cobalami 100.0 2E-44 4.3E-49 332.2 16.8 199 70-309 2-229 (258)
17 COG1123 ATPase components of v 100.0 1.5E-44 3.2E-49 360.3 16.9 221 67-323 277-534 (539)
18 COG1132 MdlB ABC-type multidru 100.0 2.8E-45 6.2E-50 377.2 10.8 222 48-309 300-553 (567)
19 COG4598 HisP ABC-type histidin 100.0 2E-44 4.2E-49 311.0 13.9 221 68-321 4-254 (256)
20 COG3638 ABC-type phosphate/pho 100.0 2.7E-44 5.9E-49 322.3 14.9 202 69-306 2-235 (258)
21 KOG0055 Multidrug/pheromone ex 100.0 1.1E-44 2.4E-49 384.3 14.5 245 28-310 298-578 (1228)
22 COG2884 FtsE Predicted ATPase 100.0 5.9E-44 1.3E-48 310.4 15.9 194 70-303 1-221 (223)
23 COG4172 ABC-type uncharacteriz 100.0 1.5E-43 3.2E-48 337.2 17.1 249 15-322 244-530 (534)
24 TIGR02314 ABC_MetN D-methionin 100.0 1.8E-43 3.9E-48 342.0 17.7 214 70-321 1-243 (343)
25 KOG0055 Multidrug/pheromone ex 100.0 5.5E-44 1.2E-48 379.1 15.0 231 46-314 954-1218(1228)
26 PRK11174 cysteine/glutathione 100.0 2.6E-44 5.6E-49 371.4 11.3 221 49-309 320-573 (588)
27 KOG0056 Heavy metal exporter H 100.0 3.2E-44 6.9E-49 347.6 10.4 228 50-318 509-771 (790)
28 KOG0057 Mitochondrial Fe/S clu 100.0 8.8E-44 1.9E-48 349.8 13.3 198 69-308 350-574 (591)
29 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.1E-44 1.3E-48 374.8 11.8 222 49-309 424-674 (686)
30 PRK11432 fbpC ferric transport 100.0 1.1E-42 2.3E-47 337.9 19.5 208 68-321 4-239 (351)
31 COG1123 ATPase components of v 100.0 6.6E-43 1.4E-47 348.5 18.3 229 68-325 3-261 (539)
32 PRK11650 ugpC glycerol-3-phosp 100.0 1E-42 2.2E-47 338.8 19.1 207 70-321 3-237 (356)
33 COG3840 ThiQ ABC-type thiamine 100.0 7.2E-43 1.6E-47 301.8 15.1 195 70-312 1-223 (231)
34 TIGR03265 PhnT2 putative 2-ami 100.0 1.6E-42 3.4E-47 337.1 19.1 208 68-321 2-237 (353)
35 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-43 2.6E-48 373.9 11.4 202 70-309 477-701 (710)
36 COG4618 ArpD ABC-type protease 100.0 1.4E-43 3E-48 345.6 10.3 258 1-309 269-561 (580)
37 TIGR01193 bacteriocin_ABC ABC- 100.0 1.3E-43 2.9E-48 373.5 11.0 224 48-309 443-698 (708)
38 COG4988 CydD ABC-type transpor 100.0 2.6E-43 5.7E-48 350.4 11.4 219 51-309 292-544 (559)
39 PRK09452 potA putrescine/sperm 100.0 3.6E-42 7.9E-47 336.6 19.0 210 68-323 12-249 (375)
40 TIGR03375 type_I_sec_LssB type 100.0 2.9E-43 6.3E-48 370.1 12.0 224 48-309 433-689 (694)
41 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-42 2.4E-47 319.2 14.2 201 69-310 2-230 (235)
42 PRK11022 dppD dipeptide transp 100.0 4E-42 8.6E-47 331.2 18.6 225 70-323 3-258 (326)
43 PRK10790 putative multidrug tr 100.0 3.9E-43 8.4E-48 363.0 11.9 222 48-309 313-564 (592)
44 PRK15079 oligopeptide ABC tran 100.0 3.5E-42 7.6E-47 332.0 17.4 220 68-323 6-266 (331)
45 PRK10851 sulfate/thiosulfate t 100.0 6.3E-42 1.4E-46 332.9 19.2 208 70-322 2-240 (353)
46 PRK09473 oppD oligopeptide tra 100.0 4.6E-42 9.9E-47 331.2 17.9 224 67-323 9-266 (330)
47 PRK11308 dppF dipeptide transp 100.0 5.9E-42 1.3E-46 330.0 18.3 220 68-323 3-259 (327)
48 COG4987 CydC ABC-type transpor 100.0 1.7E-42 3.8E-47 340.4 13.8 224 48-309 308-562 (573)
49 COG0411 LivG ABC-type branched 100.0 2.1E-42 4.5E-47 312.1 12.8 209 69-311 3-242 (250)
50 PRK11176 lipid transporter ATP 100.0 2.5E-42 5.4E-47 356.2 15.0 223 50-309 315-568 (582)
51 COG4608 AppF ABC-type oligopep 100.0 6.7E-42 1.4E-46 314.4 16.1 180 68-324 2-215 (268)
52 TIGR00958 3a01208 Conjugate Tr 100.0 2.7E-42 5.8E-47 363.5 15.0 225 49-310 450-704 (711)
53 PRK11160 cysteine/glutathione 100.0 4.4E-42 9.5E-47 354.0 16.0 224 48-310 309-564 (574)
54 PRK11607 potG putrescine trans 100.0 1.3E-41 2.8E-46 333.1 18.4 209 68-323 17-254 (377)
55 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-41 4.8E-46 329.8 19.1 206 70-321 5-241 (362)
56 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-41 2.6E-46 312.5 16.1 199 68-311 2-230 (254)
57 COG4172 ABC-type uncharacteriz 100.0 2E-41 4.3E-46 322.7 17.5 227 68-321 4-260 (534)
58 PRK15093 antimicrobial peptide 100.0 3.6E-41 7.8E-46 325.1 18.0 226 69-323 2-263 (330)
59 PRK11000 maltose/maltodextrin 100.0 8.4E-41 1.8E-45 327.0 19.3 205 70-321 3-236 (369)
60 TIGR02203 MsbA_lipidA lipid A 100.0 5.3E-42 1.1E-46 352.8 11.0 225 48-309 302-557 (571)
61 PTZ00265 multidrug resistance 100.0 2.3E-41 5E-46 376.9 15.8 230 48-309 1131-1453(1466)
62 cd03261 ABC_Org_Solvent_Resist 100.0 7.9E-41 1.7E-45 307.6 16.2 202 71-314 1-231 (235)
63 TIGR01186 proV glycine betaine 100.0 1.2E-40 2.6E-45 324.2 16.4 195 92-321 9-232 (363)
64 PRK13657 cyclic beta-1,2-gluca 100.0 8.9E-41 1.9E-45 345.2 14.9 201 70-309 334-559 (588)
65 PRK11153 metN DL-methionine tr 100.0 2.4E-40 5.2E-45 320.9 16.7 212 70-320 1-242 (343)
66 TIGR01846 type_I_sec_HlyB type 100.0 4.4E-41 9.5E-46 353.6 11.6 225 48-310 426-682 (694)
67 cd03296 ABC_CysA_sulfate_impor 100.0 1E-39 2.3E-44 301.0 19.2 203 70-318 2-236 (239)
68 TIGR00972 3a0107s01c2 phosphat 100.0 6.8E-40 1.5E-44 303.6 17.3 212 70-319 1-243 (247)
69 PLN03130 ABC transporter C fam 100.0 2.8E-40 6.1E-45 371.2 17.4 227 48-314 1204-1467(1622)
70 PRK10070 glycine betaine trans 100.0 1E-39 2.2E-44 321.3 19.2 214 70-321 4-267 (400)
71 PLN03232 ABC transporter C fam 100.0 2.1E-40 4.5E-45 371.4 15.8 225 48-314 1201-1464(1495)
72 PRK11264 putative amino-acid A 100.0 8.5E-40 1.8E-44 303.2 17.2 209 70-318 3-243 (250)
73 PRK13537 nodulation ABC transp 100.0 9.9E-40 2.2E-44 312.0 17.9 196 68-309 5-228 (306)
74 PRK09493 glnQ glutamine ABC tr 100.0 8E-40 1.7E-44 301.8 16.4 208 70-319 1-236 (240)
75 PRK14273 phosphate ABC transpo 100.0 1E-39 2.2E-44 303.7 17.2 220 68-320 5-250 (254)
76 TIGR02868 CydC thiol reductant 100.0 1.6E-40 3.5E-45 339.2 12.8 192 49-279 303-528 (529)
77 PRK13637 cbiO cobalt transport 100.0 1.5E-39 3.3E-44 308.1 17.5 201 71-309 3-235 (287)
78 PRK13647 cbiO cobalt transport 100.0 1.7E-39 3.6E-44 305.9 17.4 196 69-306 3-225 (274)
79 PRK13631 cbiO cobalt transport 100.0 1.8E-39 3.8E-44 312.0 17.8 208 68-310 19-267 (320)
80 PRK13643 cbiO cobalt transport 100.0 2E-39 4.2E-44 307.5 17.7 205 70-309 1-234 (288)
81 COG4181 Predicted ABC-type tra 100.0 8E-40 1.7E-44 280.4 13.3 195 69-300 5-227 (228)
82 PRK14250 phosphate ABC transpo 100.0 3.3E-39 7.1E-44 298.2 18.3 203 70-320 3-233 (241)
83 PRK13634 cbiO cobalt transport 100.0 3.6E-39 7.8E-44 306.0 18.8 205 71-310 3-237 (290)
84 PRK10789 putative multidrug tr 100.0 2.5E-40 5.4E-45 340.7 11.7 224 49-310 286-540 (569)
85 PRK14242 phosphate transporter 100.0 3.6E-39 7.8E-44 299.7 18.3 219 68-319 4-248 (253)
86 cd03219 ABC_Mj1267_LivG_branch 100.0 1.6E-39 3.4E-44 298.8 15.5 205 71-310 1-234 (236)
87 PRK13651 cobalt transporter AT 100.0 2.1E-39 4.5E-44 309.6 16.9 206 70-310 2-256 (305)
88 PRK11831 putative ABC transpor 100.0 2.2E-39 4.8E-44 304.2 16.9 202 68-310 5-235 (269)
89 TIGR03415 ABC_choXWV_ATP choli 100.0 3.4E-39 7.3E-44 315.7 18.1 194 92-320 40-266 (382)
90 cd03260 ABC_PstB_phosphate_tra 100.0 3.7E-39 8.1E-44 294.8 17.2 194 71-306 1-227 (227)
91 PRK14257 phosphate ABC transpo 100.0 4.4E-39 9.5E-44 310.3 18.5 221 68-319 78-324 (329)
92 PRK13646 cbiO cobalt transport 100.0 5.4E-39 1.2E-43 304.2 18.7 204 71-309 3-236 (286)
93 TIGR03005 ectoine_ehuA ectoine 100.0 3.1E-39 6.7E-44 300.1 16.7 209 71-319 1-247 (252)
94 PRK13536 nodulation factor exp 100.0 4.1E-39 8.9E-44 311.7 18.2 196 68-309 39-262 (340)
95 PRK13650 cbiO cobalt transport 100.0 5.3E-39 1.1E-43 303.2 18.5 200 69-310 3-231 (279)
96 PRK14268 phosphate ABC transpo 100.0 4E-39 8.6E-44 300.6 17.3 219 68-320 10-254 (258)
97 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-39 2.6E-44 365.8 16.2 222 48-309 1251-1509(1522)
98 cd03258 ABC_MetN_methionine_tr 100.0 2.9E-39 6.3E-44 296.6 15.9 201 70-309 1-231 (233)
99 cd03265 ABC_DrrA DrrA is the A 100.0 3.6E-39 7.9E-44 293.7 15.9 190 71-306 1-219 (220)
100 TIGR01842 type_I_sec_PrtD type 100.0 4.9E-40 1.1E-44 336.8 11.2 223 48-308 289-542 (544)
101 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.3E-39 1.1E-43 296.8 17.0 204 71-317 1-234 (242)
102 PRK14274 phosphate ABC transpo 100.0 6.4E-39 1.4E-43 299.2 17.7 220 68-320 10-255 (259)
103 TIGR01288 nodI ATP-binding ABC 100.0 3E-39 6.5E-44 308.3 15.6 196 68-309 2-225 (303)
104 cd03259 ABC_Carb_Solutes_like 100.0 9.3E-39 2E-43 289.5 18.0 185 71-301 1-213 (213)
105 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-39 2.9E-44 285.6 11.6 197 70-311 1-225 (245)
106 COG1131 CcmA ABC-type multidru 100.0 3.2E-39 6.9E-44 306.6 15.1 195 70-309 4-227 (293)
107 PRK09536 btuD corrinoid ABC tr 100.0 3.6E-39 7.9E-44 317.5 15.9 200 69-309 2-229 (402)
108 COG1137 YhbG ABC-type (unclass 100.0 5E-40 1.1E-44 288.0 8.6 200 69-311 3-231 (243)
109 PRK11701 phnK phosphonate C-P 100.0 8.6E-39 1.9E-43 298.2 17.5 214 68-320 4-253 (258)
110 PRK10619 histidine/lysine/argi 100.0 8.1E-39 1.8E-43 298.2 17.3 213 68-318 3-251 (257)
111 PRK14247 phosphate ABC transpo 100.0 8.5E-39 1.8E-43 296.7 17.3 215 69-318 2-244 (250)
112 TIGR02769 nickel_nikE nickel i 100.0 7.7E-39 1.7E-43 299.8 17.2 213 70-320 2-251 (265)
113 PRK10744 pstB phosphate transp 100.0 1.1E-38 2.4E-43 297.9 18.0 219 68-319 11-255 (260)
114 TIGR02204 MsbA_rel ABC transpo 100.0 2.6E-39 5.6E-44 333.3 15.1 203 70-309 337-564 (576)
115 PRK14269 phosphate ABC transpo 100.0 8.6E-39 1.9E-43 296.2 17.0 214 70-320 2-242 (246)
116 TIGR00960 3a0501s02 Type II (G 100.0 6.4E-39 1.4E-43 291.2 15.6 189 70-297 1-216 (216)
117 PRK14245 phosphate ABC transpo 100.0 1.2E-38 2.6E-43 295.8 17.7 214 69-320 2-246 (250)
118 PRK10261 glutathione transport 100.0 7.3E-39 1.6E-43 332.8 18.0 219 68-323 311-568 (623)
119 PRK14248 phosphate ABC transpo 100.0 1.9E-38 4.1E-43 297.6 18.8 221 67-320 18-264 (268)
120 PRK14239 phosphate transporter 100.0 1.5E-38 3.2E-43 295.3 17.8 216 68-319 3-247 (252)
121 PRK11144 modC molybdate transp 100.0 1.5E-38 3.2E-43 309.4 18.4 202 70-320 1-230 (352)
122 PRK13636 cbiO cobalt transport 100.0 1.5E-38 3.2E-43 300.7 17.9 202 68-309 3-232 (283)
123 TIGR01192 chvA glucan exporter 100.0 4.3E-39 9.4E-44 332.4 15.2 201 70-309 334-559 (585)
124 PTZ00243 ABC transporter; Prov 100.0 2.7E-39 5.8E-44 362.7 14.8 206 70-314 1308-1539(1560)
125 PRK13652 cbiO cobalt transport 100.0 1.5E-38 3.2E-43 299.8 17.4 199 69-309 2-228 (277)
126 cd03263 ABC_subfamily_A The AB 100.0 1E-38 2.2E-43 290.5 15.6 191 71-306 1-219 (220)
127 TIGR02315 ABC_phnC phosphonate 100.0 9.3E-39 2E-43 294.9 15.5 198 70-306 1-233 (243)
128 TIGR02323 CP_lyasePhnK phospho 100.0 2.1E-38 4.6E-43 294.5 17.8 213 69-320 2-250 (253)
129 PRK15112 antimicrobial peptide 100.0 2.2E-38 4.8E-43 297.1 18.0 213 68-319 2-250 (267)
130 cd03218 ABC_YhbG The ABC trans 100.0 2E-38 4.4E-43 290.7 17.3 195 71-309 1-223 (232)
131 cd03301 ABC_MalK_N The N-termi 100.0 3.6E-38 7.8E-43 285.5 18.6 184 71-301 1-213 (213)
132 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.3E-38 2.9E-43 299.0 16.4 207 72-319 26-261 (269)
133 PRK14249 phosphate ABC transpo 100.0 2.4E-38 5.2E-43 293.9 17.9 214 69-320 3-247 (251)
134 cd03266 ABC_NatA_sodium_export 100.0 1.1E-38 2.4E-43 289.8 15.2 189 70-301 1-218 (218)
135 COG4161 ArtP ABC-type arginine 100.0 7.4E-39 1.6E-43 272.3 13.0 207 71-316 3-237 (242)
136 cd03256 ABC_PhnC_transporter A 100.0 1.2E-38 2.6E-43 293.7 15.4 203 71-306 1-232 (241)
137 PRK14256 phosphate ABC transpo 100.0 2.7E-38 5.9E-43 293.8 17.9 219 69-320 3-248 (252)
138 PRK14235 phosphate transporter 100.0 2.4E-38 5.2E-43 296.9 17.5 219 68-319 17-262 (267)
139 PRK14237 phosphate transporter 100.0 3.4E-38 7.3E-43 295.9 18.5 219 68-319 18-262 (267)
140 COG5265 ATM1 ABC-type transpor 100.0 2.3E-39 5E-44 310.0 10.7 220 50-309 233-487 (497)
141 PRK13639 cbiO cobalt transport 100.0 2.5E-38 5.3E-43 298.0 17.5 201 70-310 1-228 (275)
142 PRK14270 phosphate ABC transpo 100.0 2.6E-38 5.6E-43 293.7 17.4 219 68-319 2-246 (251)
143 PRK14267 phosphate ABC transpo 100.0 2.2E-38 4.7E-43 294.4 16.8 217 69-318 3-247 (253)
144 PRK14240 phosphate transporter 100.0 3.3E-38 7.2E-43 292.7 17.9 217 70-319 3-245 (250)
145 PRK13641 cbiO cobalt transport 100.0 3E-38 6.5E-43 299.2 17.6 205 70-309 2-235 (287)
146 PRK10895 lipopolysaccharide AB 100.0 2.1E-38 4.5E-43 292.6 16.0 197 70-309 3-227 (241)
147 PRK14241 phosphate transporter 100.0 3E-38 6.4E-43 294.6 16.9 216 70-318 4-252 (258)
148 PRK13638 cbiO cobalt transport 100.0 2.7E-38 5.8E-43 297.1 16.7 200 70-310 1-227 (271)
149 PRK14254 phosphate ABC transpo 100.0 5.8E-38 1.3E-42 297.0 18.9 218 68-319 37-280 (285)
150 cd03224 ABC_TM1139_LivF_branch 100.0 1.9E-38 4.2E-43 288.8 14.9 193 71-308 1-221 (222)
151 PRK13644 cbiO cobalt transport 100.0 4.6E-38 1E-42 296.1 17.7 198 70-310 1-226 (274)
152 PRK14259 phosphate ABC transpo 100.0 5.1E-38 1.1E-42 295.0 17.8 218 68-320 11-265 (269)
153 PRK14251 phosphate ABC transpo 100.0 4.5E-38 9.8E-43 292.0 17.1 219 69-320 3-247 (251)
154 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.7E-38 1E-42 289.4 17.1 193 70-309 1-222 (236)
155 COG0410 LivF ABC-type branched 100.0 1.9E-38 4.1E-43 284.4 13.8 199 69-311 2-229 (237)
156 PRK14253 phosphate ABC transpo 100.0 6.4E-38 1.4E-42 290.6 17.8 217 70-320 3-245 (249)
157 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.8E-38 1E-42 286.3 16.5 186 71-303 1-218 (220)
158 PRK11124 artP arginine transpo 100.0 5E-38 1.1E-42 290.2 16.8 198 70-307 2-229 (242)
159 TIGR02857 CydD thiol reductant 100.0 1.3E-38 2.8E-43 325.1 14.0 205 49-290 293-528 (529)
160 PRK13635 cbiO cobalt transport 100.0 7E-38 1.5E-42 295.6 17.7 199 68-309 3-230 (279)
161 PRK14261 phosphate ABC transpo 100.0 6.9E-38 1.5E-42 291.2 17.4 220 68-320 4-249 (253)
162 TIGR03522 GldA_ABC_ATP gliding 100.0 7.5E-38 1.6E-42 298.5 18.0 194 70-309 2-222 (301)
163 TIGR03411 urea_trans_UrtD urea 100.0 7.9E-38 1.7E-42 288.7 17.5 204 69-308 1-231 (242)
164 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.3E-38 7.1E-43 297.1 15.2 208 71-321 3-236 (275)
165 PRK14236 phosphate transporter 100.0 1.1E-37 2.3E-42 293.2 18.2 218 68-318 23-266 (272)
166 PRK14262 phosphate ABC transpo 100.0 7.6E-38 1.7E-42 290.3 16.9 216 69-317 2-243 (250)
167 PRK14238 phosphate transporter 100.0 9.8E-38 2.1E-42 293.4 17.6 220 68-320 22-267 (271)
168 PRK11300 livG leucine/isoleuci 100.0 1.1E-37 2.3E-42 290.0 17.6 210 68-309 3-244 (255)
169 PRK11247 ssuB aliphatic sulfon 100.0 4E-37 8.7E-42 287.2 21.5 182 68-304 10-219 (257)
170 PRK14271 phosphate ABC transpo 100.0 1.2E-37 2.5E-42 293.6 17.8 219 68-320 19-263 (276)
171 PRK10575 iron-hydroxamate tran 100.0 6E-38 1.3E-42 293.8 15.4 198 68-308 9-237 (265)
172 cd03268 ABC_BcrA_bacitracin_re 100.0 7.2E-38 1.6E-42 282.6 15.4 181 71-301 1-208 (208)
173 PRK11629 lolD lipoprotein tran 100.0 2.4E-37 5.1E-42 284.2 18.9 196 68-302 3-228 (233)
174 PRK10261 glutathione transport 100.0 1E-37 2.2E-42 324.2 18.5 221 68-321 10-271 (623)
175 PRK11614 livF leucine/isoleuci 100.0 8.9E-38 1.9E-42 287.6 16.0 196 68-309 3-227 (237)
176 PRK14260 phosphate ABC transpo 100.0 1.4E-37 3E-42 290.3 17.6 220 68-320 5-255 (259)
177 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.1E-37 2.4E-42 283.3 16.4 188 71-297 1-218 (218)
178 TIGR02673 FtsE cell division A 100.0 1.1E-37 2.3E-42 282.5 16.2 187 70-296 1-214 (214)
179 cd03269 ABC_putative_ATPase Th 100.0 1.3E-37 2.8E-42 281.4 16.6 182 71-301 1-210 (210)
180 PRK14275 phosphate ABC transpo 100.0 1.3E-37 2.7E-42 294.9 17.0 221 67-320 36-282 (286)
181 PRK13640 cbiO cobalt transport 100.0 1.3E-37 2.8E-42 294.2 16.8 200 68-310 3-234 (282)
182 PRK14258 phosphate ABC transpo 100.0 2.2E-37 4.7E-42 289.4 18.1 213 69-319 6-256 (261)
183 PRK13633 cobalt transporter AT 100.0 1.9E-37 4.2E-42 292.7 17.9 202 68-309 2-234 (280)
184 PRK11248 tauB taurine transpor 100.0 1.6E-37 3.5E-42 289.5 17.1 186 70-304 1-216 (255)
185 PRK14255 phosphate ABC transpo 100.0 2E-37 4.2E-42 287.9 17.6 218 68-318 3-246 (252)
186 cd03264 ABC_drug_resistance_li 100.0 7.7E-38 1.7E-42 283.1 14.5 184 71-301 1-211 (211)
187 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-37 2.3E-42 281.1 15.3 178 72-298 1-205 (205)
188 TIGR02142 modC_ABC molybdenum 100.0 2.5E-37 5.5E-42 301.0 19.0 198 72-314 2-227 (354)
189 PRK14243 phosphate transporter 100.0 1.7E-37 3.7E-42 290.6 17.0 217 68-319 8-259 (264)
190 PRK14272 phosphate ABC transpo 100.0 1.8E-37 3.8E-42 288.0 16.9 217 70-319 4-247 (252)
191 PRK13632 cbiO cobalt transport 100.0 2E-37 4.3E-42 291.2 17.4 199 68-310 5-233 (271)
192 cd03292 ABC_FtsE_transporter F 100.0 1.3E-37 2.8E-42 281.9 15.4 187 71-297 1-214 (214)
193 PRK13648 cbiO cobalt transport 100.0 2.5E-37 5.3E-42 290.3 17.8 199 68-309 5-232 (269)
194 PRK10771 thiQ thiamine transpo 100.0 3.7E-37 8.1E-42 282.8 18.5 193 70-310 1-221 (232)
195 TIGR00968 3a0106s01 sulfate AB 100.0 3.7E-37 8.1E-42 283.8 18.6 203 71-320 1-232 (237)
196 PRK10908 cell division protein 100.0 1.9E-37 4.2E-42 282.7 16.5 190 70-299 1-217 (222)
197 PRK11231 fecE iron-dicitrate t 100.0 1.2E-37 2.5E-42 290.1 15.3 195 70-308 2-227 (255)
198 cd03257 ABC_NikE_OppD_transpor 100.0 1.9E-37 4.2E-42 283.2 16.4 196 70-301 1-228 (228)
199 PRK13645 cbiO cobalt transport 100.0 3.2E-37 6.9E-42 292.4 18.2 207 69-310 5-242 (289)
200 PRK10253 iron-enterobactin tra 100.0 1.2E-37 2.5E-42 291.9 14.9 198 68-308 5-233 (265)
201 PRK13649 cbiO cobalt transport 100.0 4E-37 8.6E-42 290.4 18.6 204 71-309 3-235 (280)
202 PRK13642 cbiO cobalt transport 100.0 2.9E-37 6.2E-42 291.1 17.3 199 70-310 4-231 (277)
203 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-37 3E-42 281.5 14.5 185 71-297 1-213 (213)
204 PRK13548 hmuV hemin importer A 100.0 2.2E-37 4.7E-42 289.0 16.2 195 70-308 2-230 (258)
205 TIGR01188 drrA daunorubicin re 100.0 7.8E-38 1.7E-42 298.4 13.4 178 92-309 9-214 (302)
206 TIGR01978 sufC FeS assembly AT 100.0 2.5E-37 5.3E-42 285.3 16.2 208 71-314 1-240 (243)
207 cd03300 ABC_PotA_N PotA is an 100.0 6.2E-37 1.3E-41 281.4 18.6 200 71-317 1-229 (232)
208 PRK14265 phosphate ABC transpo 100.0 3.8E-37 8.2E-42 289.9 17.2 218 68-320 18-270 (274)
209 cd03299 ABC_ModC_like Archeal 100.0 8.8E-37 1.9E-41 281.0 19.2 196 71-314 1-225 (235)
210 COG4604 CeuD ABC-type enteroch 100.0 3.8E-38 8.3E-43 275.6 9.3 196 70-309 1-226 (252)
211 PTZ00265 multidrug resistance 100.0 1.6E-37 3.4E-42 346.3 16.5 218 48-295 353-655 (1466)
212 TIGR03410 urea_trans_UrtE urea 100.0 3.5E-37 7.5E-42 282.4 15.7 189 71-306 1-219 (230)
213 TIGR03873 F420-0_ABC_ATP propo 100.0 2.5E-37 5.4E-42 288.0 14.9 197 71-308 2-226 (256)
214 PRK14246 phosphate ABC transpo 100.0 4E-37 8.8E-42 287.1 16.2 215 68-318 8-251 (257)
215 PRK10419 nikE nickel transport 100.0 7.5E-37 1.6E-41 286.9 17.9 212 69-320 2-252 (268)
216 PRK10584 putative ABC transpor 100.0 9.9E-37 2.2E-41 279.0 18.2 194 68-300 4-227 (228)
217 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.1E-36 2.3E-41 275.6 18.1 183 71-301 1-211 (211)
218 cd03225 ABC_cobalt_CbiO_domain 100.0 3.1E-37 6.8E-42 278.9 14.6 183 72-296 1-211 (211)
219 COG4559 ABC-type hemin transpo 100.0 2.1E-37 4.5E-42 273.7 12.9 197 70-309 1-231 (259)
220 PRK10418 nikD nickel transport 100.0 1.3E-36 2.8E-41 283.0 18.9 206 70-320 4-242 (254)
221 TIGR02211 LolD_lipo_ex lipopro 100.0 8.9E-37 1.9E-41 277.9 17.5 190 70-298 1-220 (221)
222 PRK09984 phosphonate/organopho 100.0 5.6E-37 1.2E-41 286.6 16.6 204 69-306 3-240 (262)
223 cd03254 ABCC_Glucan_exporter_l 100.0 2.6E-37 5.7E-42 282.8 14.0 198 71-308 3-226 (229)
224 PRK14244 phosphate ABC transpo 100.0 5.5E-37 1.2E-41 284.8 16.3 215 71-318 6-247 (251)
225 cd03235 ABC_Metallic_Cations A 100.0 2.3E-37 5E-42 280.3 13.0 183 72-301 1-213 (213)
226 cd03252 ABCC_Hemolysin The ABC 100.0 2.6E-37 5.6E-42 284.4 13.3 200 71-309 1-226 (237)
227 COG4525 TauB ABC-type taurine 100.0 5.6E-37 1.2E-41 267.9 14.6 188 69-304 2-220 (259)
228 PRK14266 phosphate ABC transpo 100.0 1.3E-36 2.8E-41 282.1 17.9 217 70-319 3-245 (250)
229 PRK14252 phosphate ABC transpo 100.0 1.2E-36 2.5E-41 285.0 17.7 222 68-320 14-261 (265)
230 PRK15134 microcin C ABC transp 100.0 1.1E-36 2.4E-41 311.1 18.6 223 68-318 3-256 (529)
231 PRK15134 microcin C ABC transp 100.0 6E-37 1.3E-41 313.1 16.4 216 68-320 273-527 (529)
232 COG1129 MglA ABC-type sugar tr 100.0 6.7E-37 1.5E-41 303.6 16.2 193 68-303 6-229 (500)
233 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.4E-37 9.6E-42 315.7 15.5 187 70-301 337-552 (555)
234 PRK13549 xylose transporter AT 100.0 1.2E-36 2.7E-41 309.2 18.5 198 68-307 3-231 (506)
235 TIGR01277 thiQ thiamine ABC tr 100.0 2.8E-36 6E-41 273.5 18.8 183 71-302 1-212 (213)
236 PRK10762 D-ribose transporter 100.0 8.5E-37 1.8E-41 310.0 17.0 197 69-307 3-229 (501)
237 TIGR01271 CFTR_protein cystic 100.0 5E-37 1.1E-41 343.9 16.6 196 70-308 1217-1440(1490)
238 PRK14264 phosphate ABC transpo 100.0 1.6E-36 3.5E-41 289.8 17.5 231 68-320 43-301 (305)
239 PRK14263 phosphate ABC transpo 100.0 2E-36 4.4E-41 283.0 17.4 215 68-317 6-254 (261)
240 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-36 3.1E-41 309.0 17.6 194 68-308 9-229 (510)
241 PRK09700 D-allose transporter 100.0 2E-36 4.3E-41 307.9 18.4 198 68-307 3-233 (510)
242 cd03251 ABCC_MsbA MsbA is an e 100.0 6.8E-37 1.5E-41 281.0 13.5 200 71-309 1-226 (234)
243 TIGR03740 galliderm_ABC gallid 100.0 2.3E-36 4.9E-41 275.8 16.7 181 71-304 1-209 (223)
244 cd03245 ABCC_bacteriocin_expor 100.0 1.3E-36 2.8E-41 276.6 14.3 193 71-301 3-220 (220)
245 PRK13547 hmuV hemin importer A 100.0 1.9E-36 4.1E-41 284.9 15.6 196 70-308 1-244 (272)
246 cd03253 ABCC_ATM1_transporter 100.0 1.3E-36 2.8E-41 279.5 13.8 198 71-308 1-224 (236)
247 COG4167 SapF ABC-type antimicr 100.0 1.7E-36 3.6E-41 262.6 13.2 217 68-321 2-252 (267)
248 PRK15056 manganese/iron transp 100.0 5.8E-36 1.2E-40 281.5 18.0 195 70-308 6-230 (272)
249 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.2E-36 4.7E-41 278.4 14.8 201 71-309 1-227 (238)
250 PRK10247 putative ABC transpor 100.0 3.2E-36 6.9E-41 275.6 15.0 190 68-304 5-223 (225)
251 cd03244 ABCC_MRP_domain2 Domai 100.0 3.5E-36 7.6E-41 273.9 14.3 192 71-302 3-220 (221)
252 cd03288 ABCC_SUR2 The SUR doma 100.0 4E-36 8.7E-41 280.2 15.1 202 68-309 17-244 (257)
253 COG4148 ModC ABC-type molybdat 100.0 3.3E-36 7.2E-41 275.6 12.5 177 94-311 16-221 (352)
254 cd03297 ABC_ModC_molybdenum_tr 100.0 2.4E-35 5.1E-40 267.5 17.3 184 71-301 2-214 (214)
255 PRK11288 araG L-arabinose tran 100.0 2.1E-35 4.6E-40 299.8 18.9 194 68-303 2-224 (501)
256 TIGR02982 heterocyst_DevA ABC 100.0 1.7E-35 3.7E-40 269.6 15.9 190 71-298 2-220 (220)
257 PRK10938 putative molybdenum t 100.0 8.6E-36 1.9E-40 301.8 15.4 196 70-309 3-225 (490)
258 TIGR02770 nickel_nikD nickel i 100.0 1.3E-35 2.8E-40 272.3 15.0 190 92-319 2-226 (230)
259 CHL00131 ycf16 sulfate ABC tra 100.0 2.6E-35 5.7E-40 273.5 17.2 202 68-305 5-238 (252)
260 PRK10982 galactose/methyl gala 100.0 2.3E-35 5.1E-40 298.8 16.8 192 73-306 1-221 (491)
261 COG4152 ABC-type uncharacteriz 100.0 8.4E-36 1.8E-40 268.4 12.0 190 70-308 2-219 (300)
262 TIGR02633 xylG D-xylose ABC tr 100.0 3.9E-35 8.4E-40 297.7 18.3 195 70-306 1-228 (500)
263 COG4107 PhnK ABC-type phosphon 100.0 1.4E-35 3E-40 255.1 12.6 217 68-321 4-254 (258)
264 COG3845 ABC-type uncharacteriz 100.0 3.1E-35 6.7E-40 287.1 15.9 191 68-302 2-223 (501)
265 TIGR01184 ntrCD nitrate transp 100.0 6.1E-35 1.3E-39 268.0 17.0 173 92-306 1-202 (230)
266 cd03248 ABCC_TAP TAP, the Tran 100.0 3.3E-35 7.1E-40 268.6 14.8 189 67-297 8-226 (226)
267 PLN03130 ABC transporter C fam 100.0 2.6E-35 5.7E-40 331.2 16.5 211 48-309 586-829 (1622)
268 PLN03232 ABC transporter C fam 100.0 2E-35 4.4E-40 331.3 15.6 212 48-309 586-829 (1495)
269 PRK13549 xylose transporter AT 100.0 3.8E-35 8.3E-40 298.3 15.6 200 68-306 257-492 (506)
270 TIGR03269 met_CoM_red_A2 methy 100.0 2.8E-35 6.1E-40 300.2 14.6 198 71-308 1-258 (520)
271 PRK09544 znuC high-affinity zi 100.0 6.4E-35 1.4E-39 271.4 15.6 180 69-309 3-210 (251)
272 PRK09580 sufC cysteine desulfu 100.0 1.8E-34 4E-39 267.1 18.2 201 70-305 1-232 (248)
273 cd03234 ABCG_White The White s 100.0 9.3E-35 2E-39 265.8 16.0 193 70-301 3-226 (226)
274 TIGR03608 L_ocin_972_ABC putat 100.0 7.7E-35 1.7E-39 262.2 15.2 179 73-290 1-205 (206)
275 PRK13543 cytochrome c biogenes 100.0 1.2E-34 2.7E-39 263.1 16.4 177 66-293 7-211 (214)
276 cd03267 ABC_NatA_like Similar 100.0 1.7E-34 3.7E-39 266.0 16.9 170 92-301 37-236 (236)
277 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-34 3.2E-39 294.9 17.7 205 68-308 277-517 (520)
278 PRK10522 multidrug transporter 100.0 3.4E-34 7.4E-39 293.9 19.4 183 70-301 322-531 (547)
279 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.5E-34 9.9E-39 261.3 18.0 175 71-301 23-224 (224)
280 PRK09700 D-allose transporter 100.0 1.5E-34 3.3E-39 294.1 16.0 194 68-305 263-495 (510)
281 KOG0054 Multidrug resistance-a 100.0 1.7E-34 3.7E-39 312.8 17.2 227 46-314 1103-1368(1381)
282 COG4619 ABC-type uncharacteriz 100.0 2.2E-35 4.7E-40 252.4 7.8 181 71-297 4-212 (223)
283 cd03214 ABC_Iron-Siderophores_ 100.0 2.3E-34 5E-39 254.6 14.3 152 72-301 1-180 (180)
284 cd03250 ABCC_MRP_domain1 Domai 100.0 2.4E-34 5.1E-39 259.1 14.2 174 71-296 1-204 (204)
285 PRK03695 vitamin B12-transport 100.0 1.7E-34 3.6E-39 268.1 13.1 188 71-308 1-222 (248)
286 PRK13538 cytochrome c biogenes 100.0 7.6E-34 1.7E-38 256.0 15.8 173 70-289 1-200 (204)
287 TIGR02324 CP_lyasePhnL phospho 100.0 1E-33 2.2E-38 258.4 16.3 185 70-290 1-221 (224)
288 PRK10535 macrolide transporter 100.0 2.7E-33 5.7E-38 292.3 21.4 201 69-307 3-231 (648)
289 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.1E-34 1.5E-38 256.5 14.8 177 69-303 5-207 (207)
290 TIGR02633 xylG D-xylose ABC tr 100.0 6.3E-34 1.4E-38 288.9 15.5 200 68-304 255-488 (500)
291 cd03231 ABC_CcmA_heme_exporter 100.0 1.1E-33 2.4E-38 254.5 14.9 170 71-290 1-197 (201)
292 PRK10762 D-ribose transporter 100.0 8.6E-34 1.9E-38 288.0 15.4 196 68-306 255-482 (501)
293 PRK13545 tagH teichoic acids e 100.0 3E-33 6.6E-38 280.2 19.1 188 68-309 19-233 (549)
294 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.2E-33 4.9E-38 265.2 17.0 202 51-309 15-248 (282)
295 TIGR01257 rim_protein retinal- 100.0 2.1E-33 4.5E-38 315.8 19.3 197 68-309 926-1150(2272)
296 TIGR01189 ccmA heme ABC export 100.0 1.8E-33 3.8E-38 252.4 14.8 170 71-288 1-195 (198)
297 PRK13539 cytochrome c biogenes 100.0 2E-33 4.4E-38 253.9 15.2 167 70-289 2-196 (207)
298 cd03290 ABCC_SUR1_N The SUR do 100.0 2.1E-33 4.6E-38 255.4 14.7 188 72-296 2-218 (218)
299 PRK10982 galactose/methyl gala 100.0 2.3E-33 5E-38 284.2 16.1 201 68-303 248-475 (491)
300 TIGR01257 rim_protein retinal- 100.0 3.9E-33 8.5E-38 313.6 18.8 197 68-308 1935-2159(2272)
301 PRK15064 ABC transporter ATP-b 100.0 4E-33 8.7E-38 285.0 17.2 195 70-308 1-242 (530)
302 cd03247 ABCC_cytochrome_bd The 100.0 2.2E-33 4.7E-38 247.8 12.8 152 71-301 1-178 (178)
303 PRK13540 cytochrome c biogenes 100.0 4.1E-33 8.9E-38 250.5 14.2 169 70-288 1-196 (200)
304 PRK15064 ABC transporter ATP-b 100.0 4E-33 8.6E-38 285.0 15.8 181 69-309 318-526 (530)
305 TIGR01187 potA spermidine/putr 100.0 3.8E-33 8.2E-38 268.8 14.0 175 107-321 1-203 (325)
306 COG4674 Uncharacterized ABC-ty 100.0 1.6E-33 3.4E-38 246.3 10.1 204 69-311 4-238 (249)
307 PRK13546 teichoic acids export 100.0 2.1E-32 4.5E-37 256.4 18.4 185 70-309 4-233 (264)
308 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.2E-33 1.6E-37 249.1 14.6 159 71-303 1-189 (200)
309 PRK11288 araG L-arabinose tran 100.0 5.6E-33 1.2E-37 282.1 15.6 193 69-306 256-483 (501)
310 PRK15439 autoinducer 2 ABC tra 100.0 8.6E-33 1.9E-37 281.3 15.9 194 68-307 266-491 (510)
311 PRK11819 putative ABC transpor 100.0 1.3E-32 2.9E-37 282.6 17.5 197 68-308 4-250 (556)
312 cd03230 ABC_DR_subfamily_A Thi 100.0 5E-33 1.1E-37 244.5 12.2 146 71-297 1-173 (173)
313 cd03246 ABCC_Protease_Secretio 100.0 5.6E-33 1.2E-37 244.2 12.5 146 71-297 1-173 (173)
314 cd03213 ABCG_EPDR ABCG transpo 100.0 1.9E-32 4.1E-37 245.2 16.0 157 70-301 3-194 (194)
315 TIGR00957 MRP_assoc_pro multi 100.0 1E-32 2.2E-37 310.0 16.8 208 48-308 605-850 (1522)
316 cd03215 ABC_Carb_Monos_II This 100.0 1.7E-32 3.8E-37 243.0 14.4 153 68-297 2-182 (182)
317 cd03233 ABC_PDR_domain1 The pl 100.0 1.7E-32 3.6E-37 247.1 14.2 170 70-301 3-202 (202)
318 PRK10938 putative molybdenum t 100.0 1.9E-32 4.1E-37 277.4 16.0 196 68-302 258-486 (490)
319 cd03229 ABC_Class3 This class 100.0 1E-32 2.3E-37 243.5 12.1 150 71-296 1-178 (178)
320 TIGR03771 anch_rpt_ABC anchore 100.0 1.4E-32 3.1E-37 251.1 13.3 171 97-308 1-201 (223)
321 cd03232 ABC_PDR_domain2 The pl 100.0 3.4E-32 7.3E-37 243.2 15.3 160 70-301 3-192 (192)
322 cd03216 ABC_Carb_Monos_I This 100.0 3.2E-32 6.9E-37 237.4 14.7 135 71-299 1-162 (163)
323 TIGR01166 cbiO cobalt transpor 100.0 2E-32 4.4E-37 243.8 12.4 154 92-279 8-186 (190)
324 TIGR00954 3a01203 Peroxysomal 100.0 8.9E-33 1.9E-37 288.7 11.6 180 69-293 450-652 (659)
325 PLN03211 ABC transporter G-25; 100.0 3E-32 6.5E-37 284.1 15.5 194 73-307 71-295 (659)
326 cd03228 ABCC_MRP_Like The MRP 100.0 2.8E-32 6E-37 239.3 12.7 145 71-296 1-171 (171)
327 PRK13541 cytochrome c biogenes 100.0 6.5E-32 1.4E-36 241.7 14.6 166 70-288 1-192 (195)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.1E-31 2.4E-36 275.7 18.0 197 68-308 2-248 (552)
329 COG0396 sufC Cysteine desulfur 100.0 3.2E-31 7E-36 237.3 16.9 202 69-308 2-233 (251)
330 COG1119 ModF ABC-type molybden 100.0 1.4E-31 3.1E-36 242.0 14.2 192 68-302 29-256 (257)
331 PRK10636 putative ABC transpor 100.0 2E-31 4.4E-36 277.6 17.0 195 70-307 1-235 (638)
332 cd03236 ABC_RNaseL_inhibitor_d 100.0 8.8E-32 1.9E-36 250.9 12.2 184 74-312 4-227 (255)
333 KOG0054 Multidrug resistance-a 100.0 2.2E-31 4.7E-36 288.8 16.1 209 49-308 489-731 (1381)
334 cd03223 ABCD_peroxisomal_ALDP 100.0 3.4E-31 7.3E-36 231.6 13.9 140 71-295 1-163 (166)
335 PRK10636 putative ABC transpor 100.0 3.7E-31 8E-36 275.7 16.4 181 68-306 310-515 (638)
336 PRK11147 ABC transporter ATPas 100.0 5.4E-31 1.2E-35 274.5 17.4 193 70-308 3-243 (635)
337 PRK11819 putative ABC transpor 100.0 4.2E-31 9.1E-36 271.5 15.8 185 68-309 322-534 (556)
338 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.7E-31 8E-36 245.5 13.8 149 92-295 10-192 (246)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6E-31 1.3E-35 270.2 15.6 180 68-303 320-526 (552)
340 TIGR01271 CFTR_protein cystic 100.0 5.2E-31 1.1E-35 295.5 16.0 209 49-308 368-636 (1490)
341 PRK15177 Vi polysaccharide exp 100.0 8.6E-31 1.9E-35 238.0 13.4 160 92-306 3-190 (213)
342 PLN03073 ABC transporter F fam 100.0 1.8E-30 3.8E-35 272.6 17.2 179 68-304 506-710 (718)
343 PRK13409 putative ATPase RIL; 100.0 1.1E-30 2.5E-35 269.2 15.3 170 68-302 338-536 (590)
344 PRK11147 ABC transporter ATPas 100.0 1.7E-30 3.6E-35 270.9 16.1 177 68-300 317-519 (635)
345 COG1101 PhnK ABC-type uncharac 100.0 1.6E-30 3.4E-35 230.6 12.4 194 70-303 1-233 (263)
346 TIGR00955 3a01204 The Eye Pigm 100.0 2.3E-30 5.1E-35 268.9 14.9 181 92-306 41-254 (617)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 8.6E-30 1.9E-34 217.7 13.5 120 71-296 1-144 (144)
348 TIGR00956 3a01205 Pleiotropic 100.0 2.7E-29 5.9E-34 279.9 19.8 198 70-304 759-989 (1394)
349 COG4136 ABC-type uncharacteriz 100.0 7.8E-30 1.7E-34 214.8 10.4 166 70-279 2-194 (213)
350 PTZ00243 ABC transporter; Prov 100.0 8.3E-30 1.8E-34 286.4 12.8 170 92-309 676-871 (1560)
351 COG4586 ABC-type uncharacteriz 100.0 1.5E-29 3.3E-34 231.3 11.1 198 70-308 3-246 (325)
352 COG1134 TagH ABC-type polysacc 100.0 9.2E-29 2E-33 223.9 16.0 168 92-309 43-237 (249)
353 PLN03073 ABC transporter F fam 100.0 2.7E-29 5.8E-34 263.7 12.9 208 69-306 176-429 (718)
354 PLN03140 ABC transporter G fam 100.0 1.3E-28 2.8E-33 274.4 17.8 194 70-304 867-1106(1470)
355 PRK13409 putative ATPase RIL; 100.0 3.7E-29 7.9E-34 258.0 12.2 173 74-294 77-286 (590)
356 TIGR00956 3a01205 Pleiotropic 100.0 8.2E-29 1.8E-33 276.1 14.1 199 92-320 77-320 (1394)
357 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-28 2.7E-33 217.6 11.4 119 74-297 4-150 (177)
358 COG0488 Uup ATPase components 100.0 6.5E-28 1.4E-32 244.2 13.5 192 69-306 2-238 (530)
359 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1E-27 2.2E-32 207.2 12.5 130 72-296 1-157 (157)
360 PLN03140 ABC transporter G fam 99.9 4.2E-28 9.1E-33 270.3 12.0 206 92-322 181-449 (1470)
361 cd03238 ABC_UvrA The excision 99.9 3.8E-27 8.3E-32 207.9 14.3 128 92-297 11-166 (176)
362 COG4778 PhnL ABC-type phosphon 99.9 1.4E-27 2.9E-32 205.0 10.2 187 70-289 4-223 (235)
363 COG4133 CcmA ABC-type transpor 99.9 1.2E-27 2.7E-32 208.3 9.5 162 70-278 2-188 (209)
364 KOG0061 Transporter, ABC super 99.9 6E-27 1.3E-31 242.3 13.6 202 70-306 25-258 (613)
365 cd03270 ABC_UvrA_I The excisio 99.9 2.9E-26 6.3E-31 210.1 14.0 75 210-301 118-226 (226)
366 PF00005 ABC_tran: ABC transpo 99.9 8.4E-27 1.8E-31 196.2 7.0 128 92-265 1-137 (137)
367 KOG0059 Lipid exporter ABCA1 a 99.9 3.5E-26 7.5E-31 245.7 13.2 196 69-307 563-786 (885)
368 COG4170 SapD ABC-type antimicr 99.9 6.4E-26 1.4E-30 200.7 9.4 234 69-325 2-265 (330)
369 COG0488 Uup ATPase components 99.9 7.8E-25 1.7E-29 221.8 14.2 178 68-304 319-521 (530)
370 COG4615 PvdE ABC-type sideroph 99.9 3E-25 6.4E-30 211.7 7.7 182 70-301 322-530 (546)
371 COG4138 BtuD ABC-type cobalami 99.9 1.1E-25 2.4E-30 194.1 2.9 185 70-309 3-222 (248)
372 cd03271 ABC_UvrA_II The excisi 99.9 8.5E-24 1.8E-28 197.4 14.3 183 92-303 11-261 (261)
373 cd03278 ABC_SMC_barmotin Barmo 99.9 6.7E-24 1.4E-28 190.6 7.8 143 93-293 14-189 (197)
374 COG1129 MglA ABC-type sugar tr 99.9 3.9E-22 8.4E-27 198.5 14.4 196 68-305 261-487 (500)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.3E-23 1.8E-27 189.9 7.1 181 99-289 23-239 (251)
376 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.7E-21 3.7E-26 176.9 9.3 166 70-296 5-210 (213)
377 KOG0927 Predicted transporter 99.9 9.9E-22 2.2E-26 193.9 8.1 181 67-303 386-591 (614)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.8 2.3E-21 5.1E-26 178.8 9.9 52 239-290 152-232 (243)
379 COG4178 ABC-type uncharacteriz 99.8 1.6E-21 3.4E-26 197.7 9.4 169 68-288 390-583 (604)
380 COG3845 ABC-type uncharacteriz 99.8 8.2E-21 1.8E-25 186.2 13.9 204 67-305 254-489 (501)
381 KOG0060 Long-chain acyl-CoA tr 99.8 7.3E-21 1.6E-25 189.0 11.5 188 68-294 431-641 (659)
382 PRK00349 uvrA excinuclease ABC 99.8 5.8E-20 1.3E-24 196.8 16.5 95 208-320 809-938 (943)
383 KOG0927 Predicted transporter 99.8 1E-20 2.2E-25 186.8 8.6 203 70-309 75-310 (614)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1E-21 2.2E-26 178.4 1.5 56 238-294 120-204 (212)
385 PRK00635 excinuclease ABC subu 99.8 1.5E-19 3.3E-24 201.6 18.6 105 185-308 764-906 (1809)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.8 8.4E-20 1.8E-24 169.4 7.2 195 71-295 4-235 (247)
387 cd03240 ABC_Rad50 The catalyti 99.8 9E-19 1.9E-23 158.2 11.0 142 95-293 16-196 (204)
388 TIGR00630 uvra excinuclease AB 99.8 2.1E-18 4.5E-23 184.6 14.0 82 208-306 807-923 (924)
389 KOG0065 Pleiotropic drug resis 99.8 4.2E-19 9.1E-24 190.3 6.6 179 92-304 807-1017(1391)
390 COG1245 Predicted ATPase, RNas 99.8 1.4E-18 3E-23 168.9 9.3 137 98-290 363-528 (591)
391 KOG0062 ATPase component of AB 99.8 2.3E-18 5.1E-23 169.3 9.5 177 67-299 359-559 (582)
392 KOG2355 Predicted ABC-type tra 99.7 9.2E-18 2E-22 148.6 10.7 193 68-303 11-232 (291)
393 KOG0064 Peroxisomal long-chain 99.7 2.3E-18 5E-23 169.5 6.2 174 71-288 482-678 (728)
394 KOG0062 ATPase component of AB 99.7 4.2E-18 9.1E-23 167.5 7.6 182 70-309 80-286 (582)
395 cd03276 ABC_SMC6_euk Eukaryoti 99.7 1.5E-17 3.3E-22 149.5 8.9 146 92-295 12-191 (198)
396 KOG0065 Pleiotropic drug resis 99.7 2.5E-17 5.5E-22 176.7 10.7 204 92-322 131-373 (1391)
397 KOG0066 eIF2-interacting prote 99.7 1.1E-16 2.4E-21 154.9 8.5 159 67-283 583-766 (807)
398 cd03280 ABC_MutS2 MutS2 homolo 99.7 1.1E-16 2.3E-21 144.0 7.8 61 240-301 86-172 (200)
399 COG2401 ABC-type ATPase fused 99.7 3.5E-16 7.6E-21 150.7 10.1 157 92-297 399-587 (593)
400 COG0178 UvrA Excinuclease ATPa 99.6 7.1E-15 1.5E-19 151.4 16.8 97 207-321 800-931 (935)
401 COG1245 Predicted ATPase, RNas 99.6 7.7E-16 1.7E-20 149.9 6.3 172 75-290 79-285 (591)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.6 7.7E-15 1.7E-19 133.4 10.1 57 239-296 120-211 (213)
403 PRK00635 excinuclease ABC subu 99.6 2.8E-14 6E-19 160.0 14.5 96 207-320 1677-1807(1809)
404 KOG0066 eIF2-interacting prote 99.5 6.9E-15 1.5E-19 142.6 5.2 193 71-298 265-488 (807)
405 cd03241 ABC_RecN RecN ATPase i 99.5 6.5E-14 1.4E-18 132.1 9.9 55 241-296 166-249 (276)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.5 4.5E-14 9.7E-19 129.2 5.0 59 243-302 87-175 (222)
407 cd03239 ABC_SMC_head The struc 99.5 3.7E-13 8E-18 119.1 10.2 47 246-293 95-171 (178)
408 cd03243 ABC_MutS_homologs The 99.4 2E-13 4.3E-18 122.9 6.9 63 243-306 89-177 (202)
409 cd03227 ABC_Class2 ABC-type Cl 99.4 9E-13 2E-17 114.6 7.8 48 245-293 77-154 (162)
410 cd03242 ABC_RecF RecF is a rec 99.4 4.9E-12 1.1E-16 119.0 12.3 35 92-127 12-46 (270)
411 cd00820 PEPCK_HprK Phosphoenol 99.4 8E-13 1.7E-17 106.9 5.3 44 92-146 5-48 (107)
412 cd03283 ABC_MutS-like MutS-lik 99.4 1.4E-12 2.9E-17 117.5 7.4 34 92-127 17-50 (199)
413 KOG0063 RNAse L inhibitor, ABC 99.4 1.5E-12 3.2E-17 126.3 7.9 143 92-290 352-529 (592)
414 PRK00349 uvrA excinuclease ABC 99.3 3.7E-12 8E-17 137.2 8.2 86 206-310 467-587 (943)
415 TIGR00630 uvra excinuclease AB 99.3 5.3E-12 1.1E-16 135.8 8.8 71 239-310 481-585 (924)
416 TIGR02858 spore_III_AA stage I 99.3 8.9E-12 1.9E-16 117.1 8.1 39 103-146 112-150 (270)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.2 1.6E-11 3.5E-16 110.9 6.2 36 92-127 19-54 (204)
418 cd01128 rho_factor Transcripti 99.2 1.4E-10 3E-15 107.9 11.5 71 220-297 110-211 (249)
419 cd03284 ABC_MutS1 MutS1 homolo 99.1 1.7E-10 3.8E-15 105.1 6.8 34 92-126 21-54 (216)
420 smart00534 MUTSac ATPase domai 99.0 9.2E-11 2E-15 104.2 2.4 48 240-287 56-130 (185)
421 TIGR03238 dnd_assoc_3 dnd syst 99.0 2.1E-10 4.6E-15 114.1 5.1 48 92-146 22-70 (504)
422 PF02463 SMC_N: RecF/RecN/SMC 99.0 2.2E-09 4.7E-14 97.5 11.1 46 245-290 136-210 (220)
423 TIGR01069 mutS2 MutS2 family p 99.0 3.8E-10 8.3E-15 120.0 6.5 33 95-127 314-348 (771)
424 PRK07721 fliI flagellum-specif 99.0 2.3E-09 4.9E-14 107.2 10.3 48 92-145 149-196 (438)
425 PRK00064 recF recombination pr 98.9 3.3E-08 7.1E-13 96.9 14.2 35 92-127 14-48 (361)
426 KOG0063 RNAse L inhibitor, ABC 98.9 2.6E-09 5.6E-14 104.1 6.0 158 100-290 98-285 (592)
427 PRK06793 fliI flagellum-specif 98.9 6E-09 1.3E-13 103.6 8.7 64 70-144 130-193 (432)
428 COG0178 UvrA Excinuclease ATPa 98.8 2.2E-08 4.8E-13 104.1 9.0 81 239-321 475-589 (935)
429 PRK06002 fliI flagellum-specif 98.8 8.6E-09 1.9E-13 102.7 5.6 64 68-142 137-200 (450)
430 TIGR00767 rho transcription te 98.7 2.9E-08 6.3E-13 97.4 7.5 76 47-127 104-193 (415)
431 PRK00409 recombination and DNA 98.7 2.8E-08 6E-13 106.2 6.3 58 240-299 385-469 (782)
432 cd03287 ABC_MSH3_euk MutS3 hom 98.7 9.8E-08 2.1E-12 87.4 8.8 44 92-140 21-65 (222)
433 PHA02562 46 endonuclease subun 98.6 2.9E-08 6.4E-13 102.3 5.5 85 210-296 434-554 (562)
434 cd03281 ABC_MSH5_euk MutS5 hom 98.6 1.4E-07 3.1E-12 85.8 8.9 29 96-124 21-51 (213)
435 PRK13695 putative NTPase; Prov 98.6 4.6E-08 1E-12 85.8 3.8 31 269-300 125-156 (174)
436 cd01130 VirB11-like_ATPase Typ 98.5 4.3E-08 9.3E-13 87.1 3.2 44 95-143 18-61 (186)
437 PRK06315 type III secretion sy 98.5 1.2E-07 2.7E-12 94.6 6.0 176 92-301 155-343 (442)
438 PTZ00132 GTP-binding nuclear p 98.4 5.8E-07 1.2E-11 81.3 7.8 24 104-127 11-35 (215)
439 PRK08533 flagellar accessory p 98.4 2E-06 4.4E-11 79.1 10.2 38 99-141 21-59 (230)
440 TIGR00634 recN DNA repair prot 98.4 4.6E-07 1E-11 93.9 6.1 52 244-296 439-519 (563)
441 PRK07196 fliI flagellum-specif 98.3 4.9E-07 1.1E-11 90.1 5.2 35 92-127 146-180 (434)
442 TIGR01026 fliI_yscN ATPase Fli 98.3 2.4E-06 5.2E-11 85.7 9.7 47 92-144 154-200 (440)
443 PF13555 AAA_29: P-loop contai 98.3 5.7E-07 1.2E-11 65.5 3.7 36 92-127 12-48 (62)
444 TIGR00618 sbcc exonuclease Sbc 98.3 8E-07 1.7E-11 98.3 6.7 67 228-295 932-1036(1042)
445 PRK08149 ATP synthase SpaL; Va 98.3 4.9E-07 1.1E-11 90.0 4.1 49 92-146 142-193 (428)
446 PRK07594 type III secretion sy 98.3 7E-07 1.5E-11 89.0 5.2 65 69-144 128-192 (433)
447 PF13304 AAA_21: AAA domain; P 98.3 2.6E-06 5.7E-11 76.3 8.4 39 240-278 231-297 (303)
448 PRK09825 idnK D-gluconate kina 98.3 7.9E-07 1.7E-11 78.5 4.7 37 101-146 2-38 (176)
449 COG3910 Predicted ATPase [Gene 98.3 4.5E-06 9.7E-11 73.8 8.8 38 88-127 25-62 (233)
450 cd01124 KaiC KaiC is a circadi 98.3 4.4E-06 9.5E-11 73.4 8.7 54 239-293 65-163 (187)
451 cd01120 RecA-like_NTPases RecA 98.3 7.4E-06 1.6E-10 69.3 9.9 36 104-144 1-36 (165)
452 TIGR02168 SMC_prok_B chromosom 98.2 7.5E-07 1.6E-11 98.8 4.4 66 225-290 1069-1163(1179)
453 PRK00300 gmk guanylate kinase; 98.2 8.9E-07 1.9E-11 79.4 4.1 28 100-127 3-30 (205)
454 PRK09862 putative ATP-dependen 98.2 1E-06 2.2E-11 89.6 4.8 62 73-145 187-248 (506)
455 cd01136 ATPase_flagellum-secre 98.2 1.9E-06 4E-11 83.1 6.2 47 92-144 60-106 (326)
456 TIGR00606 rad50 rad50. This fa 98.2 7.9E-07 1.7E-11 100.4 4.1 68 210-285 1172-1277(1311)
457 PRK10078 ribose 1,5-bisphospho 98.2 2E-06 4.3E-11 76.3 5.1 37 102-146 2-38 (186)
458 TIGR00235 udk uridine kinase. 98.2 1.2E-06 2.6E-11 79.0 3.7 28 100-127 4-31 (207)
459 PRK10869 recombination and rep 98.2 1.9E-06 4.1E-11 89.0 5.3 52 244-296 429-509 (553)
460 PLN02796 D-glycerate 3-kinase 98.1 1.1E-06 2.3E-11 85.1 2.2 53 92-146 82-142 (347)
461 PRK01156 chromosome segregatio 98.1 8.9E-06 1.9E-10 88.7 9.3 86 206-293 763-883 (895)
462 TIGR02169 SMC_prok_A chromosom 98.1 3E-06 6.6E-11 94.2 5.6 66 225-290 1054-1148(1164)
463 TIGR03498 FliI_clade3 flagella 98.1 3.1E-06 6.7E-11 84.2 4.8 46 95-145 133-178 (418)
464 PRK09270 nucleoside triphospha 98.1 2.7E-06 6E-11 78.0 4.1 34 100-138 31-64 (229)
465 PRK13830 conjugal transfer pro 98.1 9.9E-06 2.1E-10 87.4 9.0 33 95-127 449-481 (818)
466 cd03286 ABC_MSH6_euk MutS6 hom 98.1 1E-05 2.2E-10 73.9 7.6 35 92-126 20-54 (218)
467 TIGR02788 VirB11 P-type DNA tr 98.1 2.4E-06 5.1E-11 82.0 3.3 42 95-141 137-178 (308)
468 TIGR03497 FliI_clade2 flagella 98.1 4.5E-06 9.7E-11 83.1 5.1 48 92-145 128-175 (413)
469 PRK03918 chromosome segregatio 98.1 4.8E-06 1E-10 90.5 5.8 63 229-293 773-867 (880)
470 PRK01889 GTPase RsgA; Reviewed 98.1 4.4E-06 9.5E-11 81.8 5.0 48 92-144 185-232 (356)
471 PRK09099 type III secretion sy 98.1 5.1E-06 1.1E-10 83.2 5.4 47 92-144 154-200 (441)
472 TIGR03496 FliI_clade1 flagella 98.0 4.8E-06 1E-10 82.8 5.2 64 70-144 111-174 (411)
473 PRK00454 engB GTP-binding prot 98.0 2.8E-05 6E-10 68.6 9.6 23 103-125 25-47 (196)
474 TIGR02546 III_secr_ATP type II 98.0 4.5E-06 9.7E-11 83.4 4.6 47 92-144 136-182 (422)
475 PF13476 AAA_23: AAA domain; P 98.0 9.1E-06 2E-10 71.6 5.5 35 92-127 10-44 (202)
476 PRK07960 fliI flagellum-specif 98.0 5.2E-06 1.1E-10 83.0 4.3 45 97-146 170-217 (455)
477 TIGR02524 dot_icm_DotB Dot/Icm 98.0 8.1E-06 1.8E-10 79.9 5.5 28 100-127 132-159 (358)
478 TIGR02322 phosphon_PhnN phosph 98.0 7.6E-06 1.7E-10 71.8 4.8 26 102-127 1-26 (179)
479 PF09818 ABC_ATPase: Predicted 98.0 2E-05 4.4E-10 77.9 7.5 132 97-296 240-415 (448)
480 PRK15494 era GTPase Era; Provi 98.0 5.6E-06 1.2E-10 80.5 3.6 53 68-125 16-75 (339)
481 TIGR02655 circ_KaiC circadian 98.0 2.4E-07 5.2E-12 94.2 -6.2 40 98-142 17-58 (484)
482 PRK08472 fliI flagellum-specif 97.9 8.2E-06 1.8E-10 81.4 4.7 49 92-146 148-196 (434)
483 PRK10246 exonuclease subunit S 97.9 9.8E-06 2.1E-10 89.7 5.7 51 240-290 944-1029(1047)
484 PRK05922 type III secretion sy 97.9 1.2E-05 2.5E-10 80.3 5.5 47 92-144 148-194 (434)
485 PRK05688 fliI flagellum-specif 97.9 7.8E-06 1.7E-10 81.9 4.2 35 92-127 159-193 (451)
486 cd00879 Sar1 Sar1 subfamily. 97.9 7.9E-06 1.7E-10 71.9 3.8 32 92-124 10-41 (190)
487 PRK10416 signal recognition pa 97.9 9.8E-06 2.1E-10 78.1 4.3 42 100-146 112-153 (318)
488 cd02025 PanK Pantothenate kina 97.9 8.6E-06 1.9E-10 74.4 3.7 24 104-127 1-24 (220)
489 PRK06995 flhF flagellar biosyn 97.9 6.8E-06 1.5E-10 83.1 3.1 41 92-137 246-286 (484)
490 TIGR00554 panK_bact pantothena 97.9 1E-05 2.2E-10 77.0 4.1 39 103-144 63-101 (290)
491 PRK03846 adenylylsulfate kinas 97.9 1.8E-05 3.8E-10 71.0 4.9 42 100-146 22-64 (198)
492 cd04155 Arl3 Arl3 subfamily. 97.9 1.8E-05 4E-10 68.2 4.8 40 103-143 15-58 (173)
493 TIGR00606 rad50 rad50. This fa 97.9 2.2E-05 4.8E-10 88.8 6.6 59 71-145 6-71 (1311)
494 PLN03210 Resistant to P. syrin 97.9 4.4E-05 9.5E-10 85.5 8.9 45 95-143 200-244 (1153)
495 TIGR03263 guanyl_kin guanylate 97.8 1.2E-05 2.6E-10 70.5 3.5 26 102-127 1-26 (180)
496 PRK04863 mukB cell division pr 97.8 2.1E-05 4.5E-10 89.0 6.0 47 92-144 18-64 (1486)
497 PRK08972 fliI flagellum-specif 97.8 1.8E-05 4E-10 78.9 4.5 35 92-127 153-187 (444)
498 cd02026 PRK Phosphoribulokinas 97.8 2E-05 4.4E-10 74.4 4.3 33 104-141 1-33 (273)
499 PRK09183 transposase/IS protei 97.8 1E-05 2.2E-10 75.8 2.1 56 71-127 72-127 (259)
500 cd02023 UMPK Uridine monophosp 97.8 1.8E-05 3.9E-10 70.6 3.7 24 104-127 1-24 (198)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-56 Score=395.69 Aligned_cols=210 Identities=19% Similarity=0.255 Sum_probs=183.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+|+|++.. + |++|||+|.+||+++|+||||||||||||||++|.+ |++|+|.++|.++...
T Consensus 1 ~mi~i~~l~K~fg~~~---V---Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~~ 69 (240)
T COG1126 1 MMIEIKNLSKSFGDKE---V---LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGDK 69 (240)
T ss_pred CeEEEEeeeEEeCCeE---E---ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccch
Confidence 3799999999998744 4 666999999999999999999999999999999999 9999999999877411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....|...|+|||+.++|+. ++.+|+.+++..-...++++.++++.++|+++||.+
T Consensus 70 ~--------------~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~------- 128 (240)
T COG1126 70 K--------------DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD------- 128 (240)
T ss_pred h--------------hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-------
Confidence 0 122334455666777777776 788888888776667788999999999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
..+.||.+||||||||||||||| |||||+||+ |.|+|+||| .+
T Consensus 129 ----------ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F 198 (240)
T COG1126 129 ----------KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198 (240)
T ss_pred ----------hhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH
Confidence 57999999999999999999999 999999996 999999999 68
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+.+.||||+ +|++|+|+++|+++++|.+|.++.++.|+..
T Consensus 199 Ar~Vadrvi-Fmd~G~iie~g~p~~~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 199 AREVADRVI-FMDQGKIIEEGPPEEFFDNPKSERTRQFLSK 238 (240)
T ss_pred HHHhhheEE-EeeCCEEEEecCHHHHhcCCCCHHHHHHHHh
Confidence 999999995 6999999999999999999999999998864
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-52 Score=383.62 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=187.5
Q ss_pred cEEEeeeEEEeCCC--CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~--~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
||++++|+|.|..+ ..+.+ |+||||+|++||++||||.||||||||+|||++|.+ |++|+|+++|+++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~a---l~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTA---LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccCCCCceee---eccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEeccc
Confidence 68999999999752 22457 555999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.. +.-+...|..++|+||+++++. .+|.+|+++++...+ .++.+.++++.++|+.+||.+
T Consensus 73 l~------------~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~d------ 133 (339)
T COG1135 73 LS------------EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSD------ 133 (339)
T ss_pred CC------------hHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChh------
Confidence 11 1233445556677777777776 489999999988665 567889999999999999998
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++||.+|||||||||+||||| |||||+||+ |.||++|||
T Consensus 134 -----------k~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 134 -----------KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred -----------hhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 57999999999999999999999 999999997 999999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+.+.++|||++| |++|++++.|+..++|.+|.++-++.++....
T Consensus 203 ~Vvk~ic~rVav-m~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 203 EVVKRICDRVAV-LDQGRLVEEGTVSEVFANPKHAITQEFIGETL 246 (339)
T ss_pred HHHHHHhhhheE-eeCCEEEEeccHHHhhcCcchHHHHHHHHhhc
Confidence 679999999986 99999999999999999999999999988543
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-50 Score=364.43 Aligned_cols=210 Identities=19% Similarity=0.268 Sum_probs=179.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||||.|++.. + ++|+||+|++||+++++|||||||||++|+|+++++ |++|+|+++|+++..
T Consensus 1 MI~~~nvsk~y~~~~---a---v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~~-- 67 (309)
T COG1125 1 MIEFENVSKRYGNKK---A---VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDISD-- 67 (309)
T ss_pred CceeeeeehhcCCce---e---eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeeccc--
Confidence 689999999998643 4 666999999999999999999999999999999999 999999999999871
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
..... -|+++||+.|...+|+.+ |.||+.+.+.. . ..+++..++++.++|+.+||++.-
T Consensus 68 -~d~~~-LRr~IGYviQqigLFPh~Tv~eNIa~VP~L-----------~-~w~k~~i~~r~~ELl~lvgL~p~~------ 127 (309)
T COG1125 68 -LDPVE-LRRKIGYVIQQIGLFPHLTVAENIATVPKL-----------L-GWDKERIKKRADELLDLVGLDPSE------ 127 (309)
T ss_pred -CCHHH-HHHhhhhhhhhcccCCCccHHHHHHhhhhh-----------c-CCCHHHHHHHHHHHHHHhCCCHHH------
Confidence 11111 155777777777777666 66666655431 1 234677889999999999998733
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++||++|||||+|||.+|||| |||+++||+ ++|||+||| ++
T Consensus 128 ---------~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidE 198 (309)
T COG1125 128 ---------YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDE 198 (309)
T ss_pred ---------HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 68999999999999999999999 999999996 999999999 68
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 322 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 322 (346)
+.+++|||++ |++|+|+..++|++++.+|.++.++.|+..-
T Consensus 199 A~kLadri~v-m~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 199 ALKLADRIAV-MDAGEIVQYDTPDEILANPANDFVEDFFGES 239 (309)
T ss_pred HHhhhceEEE-ecCCeEEEeCCHHHHHhCccHHHHHHHhccc
Confidence 9999999976 9999999999999999999999988888754
No 4
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-49 Score=382.13 Aligned_cols=213 Identities=15% Similarity=0.202 Sum_probs=181.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.|+++||+++|++. .+ ++|+||+|++||+++|+||||||||||||+|+||+. |++|+|.++|+++.
T Consensus 3 ~~~l~i~~v~k~yg~~---~a---v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~- 70 (352)
T COG3842 3 KPALEIRNVSKSFGDF---TA---VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDIT- 70 (352)
T ss_pred CceEEEEeeeeecCCe---eE---EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC-
Confidence 4579999999999842 35 666999999999999999999999999999999999 99999999999997
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.....+|.++++||+..+|+.+ +|.+||+||+...+..++++.++++.++|+.++|.+
T Consensus 71 -----~lpp~kR~ig~VFQ~YALFPHl----------tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~------- 128 (352)
T COG3842 71 -----DVPPEKRPIGMVFQSYALFPHM----------TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG------- 128 (352)
T ss_pred -----CCChhhcccceeecCcccCCCC----------cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-------
Confidence 2223344555555555444333 677777787774444455678899999999999999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.+++|++||||||||||||||| |||.|+||. |+|.|+||| .
T Consensus 129 ----------~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 129 ----------FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred ----------hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 67999999999999999999999 999999984 999999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 325 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 325 (346)
++..++|||+| |++|+|...|+|++++..|.+.++..|+...+.+
T Consensus 199 EAl~msDrI~V-m~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~l 243 (352)
T COG3842 199 EALAMSDRIAV-MNDGRIEQVGTPEEIYERPATRFVADFIGESNIF 243 (352)
T ss_pred HHhhhccceEE-ccCCceeecCCHHHHhhCcchHHHHHHhCcceee
Confidence 79999999975 9999999999999999999999999998865544
No 5
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-50 Score=354.55 Aligned_cols=219 Identities=20% Similarity=0.229 Sum_probs=191.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.++++||++.|+... + |+||||+|++++++|||||||||||||||+++++.+.......+|+|.++|+++..
T Consensus 5 ~~~~~~~~l~~yYg~~~---a---L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH---A---LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECchh---h---hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 45699999999998654 5 66699999999999999999999999999999999854444556999999999861
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .+.+.+.|...|||||.++.|+.++++||++|++.++..+ ++.++.+++.|+.++|++++.+.
T Consensus 79 ------~-------~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDr-- 142 (253)
T COG1117 79 ------P-------KVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDR-- 142 (253)
T ss_pred ------C-------CCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHH--
Confidence 1 2345566777888888888888999999999999887766 78899999999999999877433
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
+++.+..||||||||++||||| |||||+||+ ..||||||| ..+
T Consensus 143 -----------L~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA 211 (253)
T COG1117 143 -----------LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA 211 (253)
T ss_pred -----------hhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence 7889999999999999999999 999999996 899999999 579
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+++|+++ ||..|+++|.|+++++|.+|.++.|+.++.
T Consensus 212 aRvSD~ta-Ff~~G~LvE~g~T~~iF~~P~~~~TedYis 249 (253)
T COG1117 212 ARVSDYTA-FFYLGELVEFGPTDKIFTNPKHKRTEDYIS 249 (253)
T ss_pred HHHhHhhh-hhcccEEEEEcCHHhhhcCccHHHHHHHhc
Confidence 99999998 499999999999999999999999888764
No 6
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-48 Score=347.26 Aligned_cols=216 Identities=14% Similarity=0.179 Sum_probs=175.7
Q ss_pred CcEEEeeeEEEeCCCCc-eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~-~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
++|+++|+++.|+.+.. .++ |++|||+|.+||++||+|+||||||||.|+|+|+.+ |++|+|.++|+.+..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~---l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~~ 73 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHA---LNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLAP 73 (252)
T ss_pred ceEEEeceEEEecCCcchhhh---hcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccCc
Confidence 47999999999987652 135 666999999999999999999999999999999999 999999999987651
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.......++.+.++|||+..- +-|. +|.+-+..++..++ ....++++.++|+.+||++.
T Consensus 74 ---~~~~~~~~~~VQmVFQDp~~S---------LnP~~tv~~~l~Epl~~~~---~~~~~~~i~~~L~~VgL~~~----- 133 (252)
T COG1124 74 ---KKRAKAFYRPVQMVFQDPYSS---------LNPRRTVGRILSEPLRPHG---LSKSQQRIAELLDQVGLPPS----- 133 (252)
T ss_pred ---cccchhhccceeEEecCCccc---------cCcchhHHHHHhhhhccCC---ccHHHHHHHHHHHHcCCCHH-----
Confidence 111112344566777776432 2222 66666666555432 23445569999999999985
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
+++++|++|||||+||+|||||| |||||+||. +.|+|+|||
T Consensus 134 -----------~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 134 -----------FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred -----------HHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 57999999999999999999999 999999984 889999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 324 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 324 (346)
..+..+||||+| |++|+|++.+++++++..|.++|++.++.+...
T Consensus 203 ~~v~~~cdRi~V-m~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~~~ 247 (252)
T COG1124 203 ALVEHMCDRIAV-MDNGQIVEIGPTEELLSHPSHPYTRELLEAVPS 247 (252)
T ss_pred HHHHHHhhheee-eeCCeEEEeechhhhhcCCccHHHHHHHHhhhc
Confidence 578899999976 999999999999999999999999999886543
No 7
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-48 Score=393.78 Aligned_cols=230 Identities=10% Similarity=0.136 Sum_probs=194.0
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+.++++++++.+|..+.. ....|+|+||+|.|+....+.+ |+|+||+|+|||++|||||||+||||+++
T Consensus 436 GAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~V---lk~lsfti~pGe~vALVGPSGsGKSTias 512 (716)
T KOG0058|consen 436 GASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPV---LKNLSFTIRPGEVVALVGPSGSGKSTIAS 512 (716)
T ss_pred chHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchh---hcCceeeeCCCCEEEEECCCCCCHHHHHH
Confidence 4457899999988886544 2335999999999987755446 66699999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|.++|+ |++|+|.+||+|++ .+...-.+..+++|.|.|.+|..+|.+||.+|..
T Consensus 513 LL~rfY~-----PtsG~IllDG~~i~---------------~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~----- 567 (716)
T KOG0058|consen 513 LLLRFYD-----PTSGRILLDGVPIS---------------DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD----- 567 (716)
T ss_pred HHHHhcC-----CCCCeEEECCeehh---------------hcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-----
Confidence 9999999 99999999999997 2333344455566666677777778888887764
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...+++++.++++.+.++++..+|+||+|+|||+|. +||||||||+|||||| ||.||+||.
T Consensus 568 --~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~------qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 568 --NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS------QLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred --CCCHHHHHHHHHHhChHHHHHhCccccccccCCccc------cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 344678899999999999999999999999999966 9999999999999999 999999983
Q ss_pred -------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 270 -------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 270 -------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
++|||+|+|+ ...+.||+|+ ++++|+++|.|+++|++..+..-|
T Consensus 640 E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Iv-vi~~G~V~E~G~h~eLl~~~~gly 697 (716)
T KOG0058|consen 640 EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIV-VIDKGRVVEMGTHDELLSKPNGLY 697 (716)
T ss_pred HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEE-EEcCCeEEecccHHHHhhCcccHH
Confidence 8999999994 3445599996 599999999999999998875444
No 8
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-47 Score=344.89 Aligned_cols=213 Identities=17% Similarity=0.195 Sum_probs=181.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.|++++|+++|++.. + ++||||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~fG~~~---I---ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~ 74 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV---I---LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQ 74 (263)
T ss_pred cceEEEeeeeeecCCEE---E---ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhc
Confidence 56799999999998754 3 777999999999999999999999999999999999 999999999999874
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.+..+.+.+ |+++|++||.-.+|..+ +|++|+.++++.+...+++..++.+...|+.+||.+..
T Consensus 75 ls~~~~~~i-r~r~GvlFQ~gALFssl----------tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~----- 138 (263)
T COG1127 75 LSEEELYEI-RKRMGVLFQQGALFSSL----------TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA----- 138 (263)
T ss_pred cCHHHHHHH-HhheeEEeecccccccc----------chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh-----
Confidence 443333322 33456666655544333 67777778777777788899999999999999999843
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
.+.+|++|||||++|++||||| ||||+|||+ |.|+++||| +
T Consensus 139 -----------~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 139 -----------ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred -----------hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 6899999999999999999999 999999997 999999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+..+|||+++ +.+|+|+..|+++++.+. .++++++|+.
T Consensus 208 s~~~i~Drv~~-L~~gkv~~~Gt~~el~~s-d~P~v~qf~~ 246 (263)
T COG1127 208 SLLTIADRVAV-LADGKVIAEGTPEELLAS-DDPWVRQFFN 246 (263)
T ss_pred HHHhhhceEEE-EeCCEEEEeCCHHHHHhC-CCHHHHHHhc
Confidence 78999999975 999999999999999875 6678787775
No 9
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=364.73 Aligned_cols=209 Identities=16% Similarity=0.197 Sum_probs=178.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||+|+|++.. + |++|||+|++||+++|+||||||||||||+|+||++ |++|+|+|+|++++
T Consensus 2 ~~i~l~~v~K~yg~~~---~---l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt-- 68 (338)
T COG3839 2 AELELKNVRKSFGSFE---V---LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVT-- 68 (338)
T ss_pred cEEEEeeeEEEcCCce---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC--
Confidence 3699999999998753 3 777999999999999999999999999999999999 99999999999997
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
......|.+ ++||||..++|. +|++|++|++... ..++++.++++.++++.++|.+
T Consensus 69 ----~l~P~~R~i-----------amVFQ~yALyPhmtV~~Niaf~Lk~~-~~~k~ei~~rV~eva~~L~l~~------- 125 (338)
T COG3839 69 ----DLPPEKRGI-----------AMVFQNYALYPHMTVYENIAFGLKLR-GVPKAEIDKRVKEVAKLLGLEH------- 125 (338)
T ss_pred ----CCChhHCCE-----------EEEeCCccccCCCcHHHHhhhhhhhC-CCchHHHHHHHHHHHHHcCChh-------
Confidence 212223344 445555555665 7777777777643 3356788999999999999999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+++++|.+||||||||||||||| |||+|+||. +.|+|+||| .
T Consensus 126 ----------lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 126 ----------LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred ----------HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence 78999999999999999999999 999999984 899999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 324 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 324 (346)
++..++|||+| |++|+|.+.|+|.+++.+|.+..+..|+....+
T Consensus 196 EAmtladri~V-m~~G~i~Q~g~p~ely~~P~n~fVA~FiG~p~m 239 (338)
T COG3839 196 EAMTLADRIVV-MNDGRIQQVGTPLELYERPANLFVAGFIGSPPM 239 (338)
T ss_pred HHHhhCCEEEE-EeCCeeeecCChHHHhhCccchhhhhhcCChhh
Confidence 78899999975 999999999999999999999999988886544
No 10
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-46 Score=340.43 Aligned_cols=211 Identities=17% Similarity=0.201 Sum_probs=164.3
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.++++++|++.|+. ..+ |+||||+|.+||+++||||||||||||+|+|+|+.+ |++|+|.++|+.+.
T Consensus 2 ~~l~i~~v~~~f~~---~~v---l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v~-- 68 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEV---LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPVT-- 68 (248)
T ss_pred ceEEEEeeEEEeCc---eEE---eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcccC--
Confidence 36899999999987 335 666999999999999999999999999999999999 99999999998864
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. +...++|+ ||+..+++. +|.+|+.+++.... .+..+.++++.++|+.+||.+
T Consensus 69 ----~---p~~~~~~v-----------FQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~------- 122 (248)
T COG1116 69 ----G---PGPDIGYV-----------FQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAG------- 122 (248)
T ss_pred ----C---CCCCEEEE-----------eccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcc-------
Confidence 1 11123444 555555665 88899988877543 345667779999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.++||++|||||||||+||||| |||+++||. ++|+++||| +
T Consensus 123 ----------~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 123 ----------FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred ----------hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 67999999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecC--CeEeecCCccccccCCCCCChHHHHHHHHHHHHHHHh
Q 019066 280 DLLSLTDRARIRTYL--GELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 331 (346)
Q Consensus 280 ~~~~~aDri~v~l~~--G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (346)
++..++|||+| |.+ |+|.+.-+.. +..|.......+......+...|..
T Consensus 193 EAv~LsdRivv-l~~~P~~i~~~~~i~--l~rpR~~~~~~f~~l~~~i~~~L~~ 243 (248)
T COG1116 193 EAVYLADRVVV-LSNRPGRIGEELEID--LPRPRIRGDPEFLELREELLEELRE 243 (248)
T ss_pred HHHhhhCEEEE-ecCCCcceeeEEecC--CCCCccccChHHHHHHHHHHHHHhh
Confidence 89999999964 988 4443332221 2233323334555555666555544
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.6e-48 Score=399.94 Aligned_cols=224 Identities=12% Similarity=0.130 Sum_probs=184.6
Q ss_pred hhhHHHHHHhhhhhhhhccC--------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTRI--------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
...+|+.++++.++|..... ...|+++||+|+|+...+ .+ |+|+||+|++||++||||+||||||||+
T Consensus 441 ~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~-~v---L~~isL~I~~Ge~vaIvG~SGsGKSTL~ 516 (709)
T COG2274 441 VALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDP-PV---LEDLSLEIPPGEKVAIVGRSGSGKSTLL 516 (709)
T ss_pred HHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCc-ch---hhceeEEeCCCCEEEEECCCCCCHHHHH
Confidence 33578899999888843321 224999999999987644 24 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
|+|.|+|. |++|+|++||.|+. .+.....|...++|.|+..++..++++|+.++..
T Consensus 517 KLL~gly~-----p~~G~I~~dg~dl~---------------~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p---- 572 (709)
T COG2274 517 KLLLGLYK-----PQQGRILLDGVDLN---------------DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP---- 572 (709)
T ss_pred HHHhcCCC-----CCCceEEECCEeHH---------------hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC----
Confidence 99999999 99999999999987 1233334444444555555555566666665432
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
....+++.++++..|++++++.+|.||+|+|+|.|. .||||||||++||||| |||||+||+
T Consensus 573 ---~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~------~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~ 643 (709)
T COG2274 573 ---EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA------NLSGGQRQRLALARALLSKPKILLLDEATSALDPE 643 (709)
T ss_pred ---CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC------CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHh
Confidence 233578889999999999999999999999999954 9999999999999999 999999995
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+||| ....+.||||+| |++|+|+++|++++++..
T Consensus 644 sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiV-l~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 644 TEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIV-LDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEE-ccCCceeccCCHHHHHHh
Confidence 899999999 567777999964 999999999999999876
No 12
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-46 Score=347.32 Aligned_cols=230 Identities=18% Similarity=0.224 Sum_probs=186.2
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+.+|.... .+++++| |||+|++||++||||+|||||||+.++|+|+++.......+|+|.|+|+++...
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~---vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDG---VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCCccEEEEec---eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 379999999996532 3567555 999999999999999999999999999999997322224789999999997644
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC-ChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+..+...++++.++++||+++... |+ ..+|.+.+......+... .+++.++++.++|+.+|+++..
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sL-----nP---v~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~----- 144 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSL-----NP---VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE----- 144 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhc-----CC---hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH-----
Confidence 443333567778888888876431 11 125555565555544433 3567788999999999998631
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..+++||++|||||||||.||.|| ||||++||- |.|+|+||| .
T Consensus 145 ---------~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 145 ---------RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred ---------HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 157999999999999999999999 999999983 999999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 325 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 325 (346)
.+.++||||+| |+.|+|||.|+.+++|.+|.|+||+.++.++..+
T Consensus 216 vva~~aDri~V-MYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 216 VVAEIADRVAV-MYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred HHHHhcceEEE-EECcEEEEeCCHHHHhcCCCChHHHHHHHhCccc
Confidence 68999999986 9999999999999999999999999999987665
No 13
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-45 Score=342.25 Aligned_cols=211 Identities=18% Similarity=0.243 Sum_probs=177.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce---eCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~---~i~ 146 (346)
+|+++|+++.|+... + ++||||+|+.||.+||+||||||||||||+|+|++. |++|.|.++|+ |..
T Consensus 2 ~i~i~~~~~~~~~~~---a---~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 2 SIRINNVKKRFGAFG---A---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRVLFDVS 70 (345)
T ss_pred ceeehhhhhhccccc---c---cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEeccchh
Confidence 489999999998743 5 566999999999999999999999999999999999 99999999999 543
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhcc-CCChHHHHHHHHHHHHHcCCCccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
......+++||+||+.. +|+. +|.+||+||+...+ ..++...+.++.++|+.+.|++
T Consensus 71 ------~~~~~~R~VGfvFQ~YA-----------LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~---- 129 (345)
T COG1118 71 ------NLAVRDRKVGFVFQHYA-----------LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG---- 129 (345)
T ss_pred ------ccchhhcceeEEEechh-----------hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc----
Confidence 22233445566666554 4444 77777788875442 2345678899999999999999
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
+.++||.+||||||||||+|||| |||+++||. |.|+++|||
T Consensus 130 -------------la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 130 -------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred -------------hhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 78999999999999999999999 999999984 999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLR 326 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 326 (346)
+++.++||||+ +|++|+|...|++++++.+|..+.+..++...+.+.
T Consensus 197 D~eea~~ladrvv-vl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G~~n~~~ 245 (345)
T COG1118 197 DQEEALELADRVV-VLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLP 245 (345)
T ss_pred CHHHHHhhcceEE-EecCCeeeeeCCHHHHhcCCCccceecccccceecc
Confidence 58999999996 599999999999999999999988877776554443
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.1e-45 Score=328.49 Aligned_cols=192 Identities=19% Similarity=0.248 Sum_probs=154.3
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+++++||++.|..+. .+++ |++|||+|++||+++|+|||||||||||++|.|+.+ |++|.|.++|+++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~---L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l 72 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEA---LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKL 72 (226)
T ss_pred CcEEeeeEEEeccCCcceEe---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcC
Confidence 478999999996543 2456 555999999999999999999999999999999999 9999999999998754
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
...+...++++.+||+||+..+...+ +.||+.+ +...... +....++++.++++.+||.+..
T Consensus 73 ~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l-----------pl~~~~~-~~~~~~~~~~~l~~~lgl~~~~----- 135 (226)
T COG1136 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL-----------PLLIAGK-SAGRRKRAAEELLEVLGLEDRL----- 135 (226)
T ss_pred CHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh-----------HHHHcCC-ChhHHHHHHHHHHHhcCChhhh-----
Confidence 44444456677788888887776655 5555544 3322221 1225678889999999998732
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~ 280 (346)
.+++|.+||||||||||||||| ||||.+||. |+|+||||| ..
T Consensus 136 -----------~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~ 204 (226)
T COG1136 136 -----------LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204 (226)
T ss_pred -----------ccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 3488999999999999999999 999999984 889999999 57
Q ss_pred hhccccEEEEEecCCeEe
Q 019066 281 LLSLTDRARIRTYLGELL 298 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv 298 (346)
++..|||++ .|++|++.
T Consensus 205 lA~~~dr~i-~l~dG~~~ 221 (226)
T COG1136 205 LAKYADRVI-ELKDGKIE 221 (226)
T ss_pred HHHhCCEEE-EEeCCeee
Confidence 888999996 59999943
No 15
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-45 Score=336.99 Aligned_cols=220 Identities=18% Similarity=0.201 Sum_probs=186.1
Q ss_pred CcEEEeeeEEEeCCCCce------------------ecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCC
Q 019066 69 SLTDAKNKILSYTPGAWI------------------ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 130 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~------------------~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~ 130 (346)
..|+++||++-|+..... -.+-+++|+||+|++||++.|+|-||||||||+|+|+++++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 358999999999743100 01223566999999999999999999999999999999999
Q ss_pred CCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHH
Q 019066 131 FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRM 209 (346)
Q Consensus 131 ~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~ 209 (346)
|++|+|+++|.|+...+..+-..++++. ..||||+..++|. +|.+|+.||+... ..++.+.++++
T Consensus 80 --pt~G~ilv~g~di~~~~~~~Lr~~Rr~~-----------~sMVFQ~FaLlPhrtVl~Nv~fGLev~-Gv~~~er~~~a 145 (386)
T COG4175 80 --PTRGEILVDGKDIAKLSAAELRELRRKK-----------ISMVFQSFALLPHRTVLENVAFGLEVQ-GVPKAEREERA 145 (386)
T ss_pred --CCCceEEECCcchhcCCHHHHHHHHhhh-----------hhhhhhhhccccchhHhhhhhcceeec-CCCHHHHHHHH
Confidence 9999999999998743333333333333 4556677777776 8999999998754 45678889999
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------- 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------- 269 (346)
.++|+.+||.. +.++||++|||||||||.||||| |||+|+||+
T Consensus 146 ~~~l~~VgL~~-----------------~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl 208 (386)
T COG4175 146 LEALELVGLEG-----------------YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELL 208 (386)
T ss_pred HHHHHHcCchh-----------------hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHH
Confidence 99999999999 67999999999999999999999 999999996
Q ss_pred ------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 270 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 270 ------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
++||++||| +++.++.|||++ |++|+|++.|+|+|++.+|.+.|+..|+.-.+
T Consensus 209 ~Lq~~l~KTIvFitHDLdEAlriG~rIai-mkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~ 269 (386)
T COG4175 209 ELQAKLKKTIVFITHDLDEALRIGDRIAI-MKDGEIVQVGTPEEILLNPANDYVRDFVRNVD 269 (386)
T ss_pred HHHHHhCCeEEEEecCHHHHHhccceEEE-ecCCeEEEeCCHHHHHcCccHHHHHHHHhcCC
Confidence 899999999 789999999986 99999999999999999999999999998543
No 16
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2e-44 Score=332.22 Aligned_cols=199 Identities=13% Similarity=0.123 Sum_probs=163.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |.+|+|.++|+++....
T Consensus 2 ~L~~~~ls~~y~~~~---i---l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~~~~ 70 (258)
T COG1120 2 MLEVENLSFGYGGKP---I---LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIASLS 70 (258)
T ss_pred eeEEEEEEEEECCee---E---EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchhhcC
Confidence 589999999998643 3 777999999999999999999999999999999999 99999999999986211
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
..-..+.++|++|......++ |++-+.+... +...+.....+++++.+.++|+.+++.+
T Consensus 71 ----~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~--------p~~~~~~~~~~~D~~~v~~aL~~~~~~~-------- 130 (258)
T COG1120 71 ----PKELAKKLAYVPQSPSAPFGLTVYELVLLGRY--------PHLGLFGRPSKEDEEIVEEALELLGLEH-------- 130 (258)
T ss_pred ----HHHHhhhEEEeccCCCCCCCcEEeehHhhcCC--------cccccccCCCHhHHHHHHHHHHHhCcHH--------
Confidence 111244678888887655555 6665554321 1111112234566678999999999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
+.+++..+|||||||||.||||| ||||++||- |+|+|+|+| +.
T Consensus 131 ---------la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~ 201 (258)
T COG1120 131 ---------LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL 201 (258)
T ss_pred ---------HhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 67999999999999999999999 999999983 899999999 68
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.++||+++ +|++|+++..|+|++++..
T Consensus 202 A~ryad~~i-~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 202 AARYADHLI-LLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHhCCEEE-EEECCeEEeecCcchhcCH
Confidence 999999996 4999999999999988764
No 17
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-44 Score=360.34 Aligned_cols=221 Identities=16% Similarity=0.213 Sum_probs=180.6
Q ss_pred CCCcEEEeeeEEEeCCC--------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE
Q 019066 67 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 138 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~--------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I 138 (346)
..++++++||++.|... ..+++ ++||||+|.+||++||||+||||||||.|+|+|+++ |++|.|
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~A---v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i 348 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKA---VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSI 348 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceee---eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceE
Confidence 47789999999999741 22456 555999999999999999999999999999999999 999999
Q ss_pred EECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcC
Q 019066 139 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 217 (346)
Q Consensus 139 ~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (346)
.++|.++. .. .....-.++.+.++|||+... +.+. +|.+.+..++..+......+.++++.++++.++
T Consensus 349 ~~~g~~~~-~~-~~~~~~~r~~~QmvFQdp~~S---------LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~Vg 417 (539)
T COG1123 349 IFDGQDLD-LT-GGELRRLRRRIQMVFQDPYSS---------LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417 (539)
T ss_pred EEeCcccc-cc-cchhhhhhhheEEEEeCcccc---------cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcC
Confidence 99998832 11 111111233445555554321 3333 788888887765554445666788999999999
Q ss_pred CCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cc
Q 019066 218 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 271 (346)
Q Consensus 218 l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ 271 (346)
|.+. ++++||++||||||||++||||| |||||+||. |.
T Consensus 418 L~~~----------------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 418 LPPE----------------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred CCHH----------------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 9964 47999999999999999999999 999999995 99
Q ss_pred eEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 272 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 272 tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
|+|+||| +.+..+||||+| |++|+||+.|+.+++|..|.++|++.++.+..
T Consensus 482 t~lfISHDl~vV~~i~drv~v-m~~G~iVE~G~~~~v~~~p~h~Ytr~L~~avp 534 (539)
T COG1123 482 TYLFISHDLAVVRYIADRVAV-MYDGRIVEEGPTEKVFENPQHPYTRKLLAAVP 534 (539)
T ss_pred EEEEEeCCHHHHHhhCceEEE-EECCeEEEeCCHHHHhcCCCChHHHHHHHhcc
Confidence 9999999 578999999975 99999999999999999999999999988654
No 18
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.8e-45 Score=377.15 Aligned_cols=222 Identities=12% Similarity=0.152 Sum_probs=180.3
Q ss_pred hhhHHHHHHhhhhhhhhccC------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
...+++.++++.+++..+.. ...|+++||+|+|+++..+ |+|+||+|++||++|||||||||||||+++
T Consensus 300 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~v-----l~~is~~i~~Ge~vaiVG~sGsGKSTl~~L 374 (567)
T COG1132 300 AAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPV-----LKDISFSIEPGEKVAIVGPSGSGKSTLIKL 374 (567)
T ss_pred HHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCcc-----ccCceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 44577889998766544432 1349999999999864443 777999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+|+ |++|+|++||+|++ . +...+.+...++|+|++.+|..++.+||.++..
T Consensus 375 L~r~~~-----~~~G~I~idg~dI~------~---------i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~------ 428 (567)
T COG1132 375 LLRLYD-----PTSGEILIDGIDIR------D---------ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP------ 428 (567)
T ss_pred HhccCC-----CCCCeEEECCEehh------h---------cCHHHHHHhccEEcccceeecccHHHHHhcCCC------
Confidence 999999 99999999999997 2 222233333444445555555566666665532
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...++++.++++.+++++++..+|+||+|+|||+|. .||||||||++||||| |||||+||.
T Consensus 429 -~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~------~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE 501 (567)
T COG1132 429 -DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGV------NLSGGQRQRLAIARALLRNPPILILDEATSALDTETE 501 (567)
T ss_pred -CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCc------cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhH
Confidence 234578999999999999999999999999999965 9999999999999999 999999984
Q ss_pred ------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+|+| ..+.. ||+|+ +|++|++++.|+|++++.+
T Consensus 502 ~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~Ii-Vl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 502 ALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRII-VLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEE-EEECCEEEEecCHHHHHHc
Confidence 679999999 34555 99996 4999999999999999887
No 19
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-44 Score=311.03 Aligned_cols=221 Identities=16% Similarity=0.135 Sum_probs=185.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.|+++|+.++|+.... |++|||+.++|+++.|||.|||||||++|||+-+.. |++|.|.++|+.+..
T Consensus 4 ~~~l~v~dlHK~~G~~eV------LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~~ 72 (256)
T COG4598 4 ENALEVEDLHKRYGEHEV------LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIRL 72 (256)
T ss_pred ccceehhHHHhhcccchh------hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEEe
Confidence 456999999999988653 677999999999999999999999999999999999 999999999998751
Q ss_pred cccc--cccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFL--QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~--~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
-... +.....+ ...+..|..-++|||+.+++.. ++.+|+...+..--..++.+..++++.+|.++|+.+
T Consensus 73 k~~~~G~l~~ad~----~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e---- 144 (256)
T COG4598 73 KRDKDGQLKPADK----RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE---- 144 (256)
T ss_pred eeCCCCCeeeCCH----HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh----
Confidence 0000 0000001 1133345556889999999987 999999987654334567788899999999999998
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..+.||..|||||+||++||||| |||||+||+ |+|+++|||
T Consensus 145 -------------k~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHE 211 (256)
T COG4598 145 -------------KADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211 (256)
T ss_pred -------------hhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 46899999999999999999999 999999996 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
.++.+.+.+++ +|++|.|-++|+|+++|.+|..+..+.|+.+
T Consensus 212 M~FAR~Vss~v~-fLh~G~iEE~G~P~qvf~nP~S~RlkqFlss 254 (256)
T COG4598 212 MGFARDVSSHVI-FLHQGKIEEEGPPEQVFGNPQSPRLKQFLSS 254 (256)
T ss_pred hhHHHhhhhheE-EeecceecccCChHHHhcCCCCHHHHHHHHh
Confidence 67889999995 6999999999999999999999988888764
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-44 Score=322.35 Aligned_cols=202 Identities=15% Similarity=0.148 Sum_probs=159.7
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||++.|+++.. + |+||||+|++||+++||||||||||||||+|+|+.+ |++|+|.++|.++...
T Consensus 2 ~~i~~~nl~k~yp~~~~--a---L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ--A---LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKL 71 (258)
T ss_pred ceEEEeeeeeecCCCce--e---eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhcc
Confidence 47999999999976554 5 777999999999999999999999999999999999 9999999999987622
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHH---HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKL---WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~---~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
...+ ..-.|+++|++||.+.+...+ |.+|+..... +.+.. .-....++.+.++.++|+++|+.+
T Consensus 72 ~~k~-lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~s-------lfglfsk~dk~~Al~aLervgi~~---- 139 (258)
T COG3638 72 KGKE-LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRS-------LFGLFSKEDKAQALDALERVGILD---- 139 (258)
T ss_pred chHH-HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHH-------HhCCCCHHHHHHHHHHHHHcCcHH----
Confidence 2111 111244566666666555444 5555433221 00000 012234677888999999999998
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
.+.++..+|||||+|||+||||| |||+++||+ |.|+|+.-|
T Consensus 140 -------------~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH 206 (258)
T COG3638 140 -------------KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH 206 (258)
T ss_pred -------------HHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEec
Confidence 56788999999999999999999 999999996 999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+.+.++||||+ -|++|+|+.+|+++++
T Consensus 207 ~vdlA~~Y~~Rii-gl~~G~ivfDg~~~el 235 (258)
T COG3638 207 QVDLAKKYADRII-GLKAGRIVFDGPASEL 235 (258)
T ss_pred hHHHHHHHHhhhe-EecCCcEEEeCChhhh
Confidence 78999999996 5999999999999764
No 21
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-44 Score=384.35 Aligned_cols=245 Identities=16% Similarity=0.217 Sum_probs=200.5
Q ss_pred cccCCCCCCCCcccchhhh-hhhhHHHHHHhhhhhhhhcc---------CCCcEEEeeeEEEeCCCCceecccCceeeeE
Q 019066 28 LLSGDDEGSRDSWDSLVDQ-RRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDY 97 (346)
Q Consensus 28 ~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl 97 (346)
+..+...+-..|-+..... +.+...++++.+..|..... ....|+++||+|+|+.+..+.+ |+++||
T Consensus 298 l~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~I---l~g~sl 374 (1228)
T KOG0055|consen 298 LIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKI---LKGVSL 374 (1228)
T ss_pred hhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchh---hCCeEE
Confidence 3344444444443333332 33455678888777665332 1235999999999988765556 555999
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 177 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~q 177 (346)
+|++|+++||||||||||||++++|.|+|+ |++|+|++||.|++ .+.....|..+++|.|
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~Rfyd-----P~~G~V~idG~di~---------------~~~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYD-----PTSGEVLIDGEDIR---------------NLNLKWLRSQIGLVSQ 434 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCceEEEcCccch---------------hcchHHHHhhcCeeee
Confidence 999999999999999999999999999999 99999999999987 2444455667777888
Q ss_pred chHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHH
Q 019066 178 NINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 257 (346)
Q Consensus 178 n~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IA 257 (346)
.|.+|..++.+||.++.. ...++++.++++..+..+++..+|+||+|.|||+|. +||||||||+|||
T Consensus 435 ePvlF~~tI~eNI~~G~~-------dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~------qLSGGQKQRIAIA 501 (1228)
T KOG0055|consen 435 EPVLFATTIRENIRYGKP-------DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV------QLSGGQKQRIAIA 501 (1228)
T ss_pred chhhhcccHHHHHhcCCC-------cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC------CCChHHHHHHHHH
Confidence 888888899999988653 456788999999999999999999999999999976 7999999999999
Q ss_pred Hhc---------CccccCCCC---------------CceEEEEech--hhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 258 TTF---------NCPYLSFRD---------------DKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 258 rAL---------DEPts~Ld~---------------g~tviiiTH~--~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
||| |||||+||. |+|.|+|+|+ .+.. ||+|++ |++|+|+|.|+|+|++..+
T Consensus 502 Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v-~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 502 RALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAV-MEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEE-EECCEEEEecCHHHHHhcc
Confidence 999 999999994 9999999993 4555 999975 9999999999999999876
No 22
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.9e-44 Score=310.44 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=161.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+|+||++.|+++.. | |+||||+|++||++-|+||||||||||+|+|++..+ |++|+|+++|+|+...
T Consensus 1 mI~f~~V~k~Y~~g~~--a---L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~l- 69 (223)
T COG2884 1 MIRFENVSKAYPGGRE--A---LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRL- 69 (223)
T ss_pred CeeehhhhhhcCCCch--h---hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeecccc-
Confidence 6899999999988743 6 566999999999999999999999999999999999 9999999999998622
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
...+..+-|+++|++|||.++.... +|++|+++++...+ .++.+.++++.++|+.+||.+
T Consensus 70 ~~~~iP~LRR~IGvVFQD~rLL~~~----------tvyeNVA~pL~v~G-~~~~~i~~rV~~~L~~VgL~~--------- 129 (223)
T COG2884 70 KGREIPFLRRQIGVVFQDFRLLPDR----------TVYENVALPLRVIG-KPPREIRRRVSEVLDLVGLKH--------- 129 (223)
T ss_pred cccccchhhheeeeEeeeccccccc----------hHhhhhhhhhhccC-CCHHHHHHHHHHHHHHhccch---------
Confidence 1223334477888888887765433 55666666665443 346788999999999999998
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..+..|.+|||||||||+||||+ ||||.+||+ |+||+|.|| ..+.
T Consensus 130 --------k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 130 --------KARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred --------hhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 45888999999999999999999 999999996 999999999 4677
Q ss_pred ccccEEEEEecCCeEeecCCc
Q 019066 283 SLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~ 303 (346)
+.--|++ .+++|+++.+...
T Consensus 202 ~~~~rvl-~l~~Grl~~d~~~ 221 (223)
T COG2884 202 RMRHRVL-ALEDGRLVRDESR 221 (223)
T ss_pred hccCcEE-EEeCCEEEecccc
Confidence 7778885 5999999977543
No 23
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-43 Score=337.22 Aligned_cols=249 Identities=14% Similarity=0.206 Sum_probs=201.2
Q ss_pred ccccccccccccccccCCCCCCCCcccchhhhhhhhHHHHHHhhhhhhhhccCCCcEEEeeeEEEeCCCC--------ce
Q 019066 15 EEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGA--------WI 86 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~--------~~ 86 (346)
..+..|.++|+..++.+.+.+++.|. ++.+.++++.++|.+.|+-+. .+
T Consensus 244 ~lF~~PqHpYTr~Ll~aeP~g~~~p~-----------------------~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~ 300 (534)
T COG4172 244 TLFAAPQHPYTRKLLAAEPSGDPPPL-----------------------PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHL 300 (534)
T ss_pred HHhhCCCChHHHHHHhcCCCCCCCCC-----------------------CCCCCceEEecceEEEEecCCccccccchhe
Confidence 34567778887777777777666654 112366899999999995321 13
Q ss_pred ecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceee
Q 019066 87 ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 166 (346)
Q Consensus 87 ~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~ 166 (346)
.|+++ |||++++||+++|||+||||||||-.+|.++++ ++ |+|.|+|+++...+..+. .--|+.+..+||
T Consensus 301 ~AVd~---isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s~-G~I~F~G~~i~~~~~~~m-rplR~~mQvVFQ 370 (534)
T COG4172 301 RAVDG---ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----SQ-GEIRFDGQDIDGLSRKEM-RPLRRRMQVVFQ 370 (534)
T ss_pred EEecc---ceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----cC-ceEEECCccccccChhhh-hhhhhhceEEEe
Confidence 57555 999999999999999999999999999999997 55 999999999974333222 222557788888
Q ss_pred cccccccchhhchHhhHH-HHHhhhhcchhhcc-CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCC
Q 019066 167 DTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 244 (346)
Q Consensus 167 d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~ 244 (346)
|+.+. +.+. +|.+-|..|+..+. ..+..+.++++.++|+.+||++.. +++||+
T Consensus 371 DPygS---------LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----------------r~RYPh 425 (534)
T COG4172 371 DPYGS---------LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----------------RNRYPH 425 (534)
T ss_pred CCCCC---------CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----------------hhcCCc
Confidence 87643 2333 66667777777665 455678889999999999999854 699999
Q ss_pred CCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech--hhhccccEEEEEecCCe
Q 019066 245 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG--DLLSLTDRARIRTYLGE 296 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~--~~~~~aDri~v~l~~G~ 296 (346)
++|||||||+|||||+ |||||+||. |.+.++|||| .+..+||+++| |++|+
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viV-m~~Gk 504 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIV-MRDGK 504 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEE-EeCCE
Confidence 9999999999999998 999999984 8999999994 57889999965 99999
Q ss_pred EeecCCccccccCCCCCChHHHHHHH
Q 019066 297 LLGIPPAKQIFDIPESSDPENELIIV 322 (346)
Q Consensus 297 iv~~g~~~~l~~~~~~~~~~~~~~~~ 322 (346)
|||.|+.+++|.+|.++||+.++.+.
T Consensus 505 iVE~G~~~~if~~P~~~YT~~L~~aa 530 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTRALLAAA 530 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHHHHHHhh
Confidence 99999999999999999999998754
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.8e-43 Score=342.03 Aligned_cols=214 Identities=14% Similarity=0.159 Sum_probs=169.9
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
||+++||+++|+.+. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~---L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTL 72 (343)
T ss_pred CEEEEEEEEEECCCCcceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 589999999996421 1235 666999999999999999999999999999999999 9999999999998521
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .......++.++|++|+...+... ++.+|+.++.... ..+..+.++++.++++.+||.+
T Consensus 73 ~-~~~l~~~r~~Ig~v~Q~~~l~~~~----------tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~-------- 132 (343)
T TIGR02314 73 S-NSELTKARRQIGMIFQHFNLLSSR----------TVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGD-------- 132 (343)
T ss_pred C-HHHHHHHhcCEEEEECCccccccC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 1 111111245677777776554332 4444444433221 1234566778999999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
.+++++.+|||||||||+||||| ||||++||+ |.|||+||| +.
T Consensus 133 ---------~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 133 ---------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203 (343)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56899999999999999999999 999999984 789999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+.++||++++ |++|++++.|++++++.+|.++.++.++..
T Consensus 204 v~~~~d~v~v-l~~G~iv~~g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 204 VKRICDCVAV-ISNGELIEQGTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHcCCCcHHHHHHHhh
Confidence 8899999975 999999999999999999888877777653
No 25
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-44 Score=379.13 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=196.0
Q ss_pred hhhhhHHHHHHhhhhhhhhccC---------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHH
Q 019066 46 QRRRDAVFREVLQSYDQLRTRI---------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 116 (346)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKS 116 (346)
...+...++.+++.+|.+.... ..-|+++||+|+|+....+.+ |+|+||+|++|+++|||||||||||
T Consensus 954 a~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~I---l~~l~l~i~~GqTvALVG~SGsGKS 1030 (1228)
T KOG0055|consen 954 AKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPV---LNNLSLSIRAGQTVALVGPSGSGKS 1030 (1228)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchh---hcCCcEEecCCCEEEEECCCCCCHH
Confidence 3345567899998887543321 124999999999987665556 5559999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh
Q 019066 117 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 196 (346)
Q Consensus 117 TLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~ 196 (346)
|++.+|-++|+ |++|.|.+||+|++ .+.+...|...++|.|.|.||..++++||.+|..
T Consensus 1031 TvI~LLeRfYd-----p~~G~V~IDg~dik---------------~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~- 1089 (1228)
T KOG0055|consen 1031 TVISLLERFYD-----PDAGKVKIDGVDIK---------------DLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE- 1089 (1228)
T ss_pred HHHHHHHHhcC-----CCCCeEEECCcccc---------------cCCHHHHHHhcceeccCchhhcccHHHHHhccCC-
Confidence 99999999999 99999999999997 3455556666777888888888899999998822
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCC
Q 019066 197 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 267 (346)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 267 (346)
+..++++.++++..++++++..+|+||||.|||+|. +||||||||+|||||| ||.||+|
T Consensus 1090 ------~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~------QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1090 ------EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV------QLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred ------CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC------cCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 245678999999999999999999999999999966 9999999999999999 9999999
Q ss_pred CC---------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 268 RD---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 268 d~---------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
|. |+|.|+|+|+ ...+.||.|+| +++|+|+|.|+|++++. +.-.|
T Consensus 1158 DseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~V-i~~G~VvE~GtH~~L~~-~~G~Y 1218 (1228)
T KOG0055|consen 1158 DSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAV-LKNGKVVEQGTHDELLA-KRGIY 1218 (1228)
T ss_pred hhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEE-EECCEEEecccHHHHHh-CCCch
Confidence 83 9999999994 45566999975 99999999999999998 44444
No 26
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-44 Score=371.40 Aligned_cols=221 Identities=14% Similarity=0.088 Sum_probs=173.7
Q ss_pred hhHHHHHHhhhhhhhhc-c----C---CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRT-R----I---GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~-~----~---~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
...|+.++++.+++... . . ..-|+++||+|.|.++.. + |+|+||+|++|+++||+||||||||||++
T Consensus 320 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~--v---L~~i~l~i~~G~~vaIvG~SGsGKSTL~~ 394 (588)
T PRK11174 320 AAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKT--L---AGPLNFTLPAGQRIALVGPSGAGKTSLLN 394 (588)
T ss_pred HHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCe--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 34667888765543211 1 1 124999999987754443 4 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ ++|+|.+||+++. + +...+.+..+++|+|++.+|..++++||.++..
T Consensus 395 lL~g~~p------~~G~I~i~g~~i~------~---------~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~----- 448 (588)
T PRK11174 395 ALLGFLP------YQGSLKINGIELR------E---------LDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP----- 448 (588)
T ss_pred HHhcCCC------CCcEEEECCEecc------c---------CCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-----
Confidence 9999994 6899999999986 1 222333334444555555556666677765421
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
+..++++.++++.+++++++..+|+||+|.|||+|. .||||||||++||||| |||||+||.
T Consensus 449 --~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~------~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 449 --DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA------GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred --CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 234578889999999999999999999999999954 8999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| -.....||+|+ +|++|++++.|++++++..
T Consensus 521 e~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Ii-vl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 521 EQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW-VMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEE-EEeCCeEeecCCHHHHHhc
Confidence 799999999 34455699996 5999999999999999865
No 27
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-44 Score=347.65 Aligned_cols=228 Identities=14% Similarity=0.158 Sum_probs=188.8
Q ss_pred hHHHHHHhhhhhhhhccC--------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 50 DAVFREVLQSYDQLRTRI--------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~--------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
.++.++++++++++.+.+ ...|+|+||+|.|..+.++ |+||||++.||+++|||||||+||||++|+
T Consensus 509 mEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~v-----l~disF~v~pGktvAlVG~SGaGKSTimRl 583 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPV-----LSDISFTVQPGKTVALVGPSGAGKSTIMRL 583 (790)
T ss_pred HHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCce-----eecceEEecCCcEEEEECCCCCchhHHHHH
Confidence 467899999999987653 2359999999999888775 888999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCccccccccc--CCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTI--PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~--~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
|.++++ .++|.|.+||+|++ .... -|+.+|.++||..+|. +++..||.++..
T Consensus 584 LfRffd-----v~sGsI~iDgqdIr------nvt~~SLRs~IGVVPQDtvLFN-----------dTI~yNIryak~---- 637 (790)
T KOG0056|consen 584 LFRFFD-----VNSGSITIDGQDIR------NVTQSSLRSSIGVVPQDTVLFN-----------DTILYNIRYAKP---- 637 (790)
T ss_pred HHHHhh-----ccCceEEEcCchHH------HHHHHHHHHhcCcccCcceeec-----------ceeeeheeecCC----
Confidence 999999 99999999999987 1111 1445666666665554 445555554432
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
....+++.++++..++++.+..+|+||.|.|||||+ .|||||||||||||++ ||.||+||.
T Consensus 638 ---~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL------kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~ 708 (790)
T KOG0056|consen 638 ---SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL------KLSGGEKQRVAIARTILKAPSIILLDEATSALDTN 708 (790)
T ss_pred ---CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc------ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCc
Confidence 344577889999999999999999999999999987 8999999999999998 999999983
Q ss_pred --------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 270 --------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 270 --------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
++|.|+|+|+ ...-.||.|++ +++|+|+|.|.|+|++.++.-.|..++
T Consensus 709 tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILv-i~~G~IvErG~HeeLl~rdgG~Ya~MW 771 (790)
T KOG0056|consen 709 TERAIQAALARLCANRTTIVVAHRLSTIVNADLILV-ISNGRIVERGRHEELLKRDGGAYADMW 771 (790)
T ss_pred cHHHHHHHHHHHhcCCceEEEeeeehheecccEEEE-EeCCeEeecCcHHHHHhccCCcHHHHH
Confidence 8999999993 33335999975 999999999999999988766665444
No 28
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-44 Score=349.79 Aligned_cols=198 Identities=16% Similarity=0.204 Sum_probs=169.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
..|+|+||+++|+++.. + |+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|++||++++
T Consensus 350 ~~I~F~dV~f~y~~k~~--i---L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik-- 416 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRK--V---LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIK-- 416 (591)
T ss_pred CcEEEEeeEEEeCCCCc--e---ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHh--
Confidence 35999999999988764 3 677999999999999999999999999999999997 7899999999997
Q ss_pred ccccccccC--CCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIP--RGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~--r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
+.... |+.++++|||.. +|..+|..||.+|.. ....+++.+++++.++++-+.++|
T Consensus 417 ----~~~~~SlR~~Ig~VPQd~~-----------LFndTIl~NI~YGn~-------sas~eeV~e~~k~a~~hd~i~~l~ 474 (591)
T KOG0057|consen 417 ----EVSLESLRQSIGVVPQDSV-----------LFNDTILYNIKYGNP-------SASDEEVVEACKRAGLHDVISRLP 474 (591)
T ss_pred ----hhChHHhhhheeEeCCccc-----------ccchhHHHHhhcCCC-------CcCHHHHHHHHHHcCcHHHHHhcc
Confidence 32222 445556555554 455566677776543 344578999999999999999999
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDL 281 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~ 281 (346)
+||+|.|||+|. .|||||||||+||||+ |||||+||. ++|+|+|.| -..
T Consensus 475 ~GY~T~VGerG~------~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~l 548 (591)
T KOG0057|consen 475 DGYQTLVGERGL------MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDL 548 (591)
T ss_pred ccchhhHhhccc------ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchh
Confidence 999999999977 8999999999999998 999999984 899999999 345
Q ss_pred hccccEEEEEecCCeEeecCCcccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
...||+|+ ++++|++.+.|++++++.
T Consensus 549 l~~~DkI~-~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 549 LKDFDKII-VLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCEEE-EEECCeeEEeccHHHHhh
Confidence 55699996 599999999999999988
No 29
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.1e-44 Score=374.82 Aligned_cols=222 Identities=13% Similarity=0.116 Sum_probs=174.7
Q ss_pred hhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
..+|+.++++.+++.... ....|+++||+|+|++... .+ |+|+||+|++||++||+|+||||||||+|+|
T Consensus 424 ~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~-~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL 499 (686)
T TIGR03797 424 LWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGP-LI---LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL 499 (686)
T ss_pred HHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCCc-cc---eeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 345677777665443211 1235999999999964321 14 7779999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.+||+++. . +...+.+...++|+|++.++..++++|+.++..
T Consensus 500 ~gl~~-----p~~G~I~idg~~i~------~---------~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~------- 552 (686)
T TIGR03797 500 LGFET-----PESGSVFYDGQDLA------G---------LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP------- 552 (686)
T ss_pred hCCCC-----CCCCEEEECCEEcC------c---------CCHHHHHhccEEEccCCccCcccHHHHHhcCCC-------
Confidence 99999 99999999999986 1 222223333344444444555566666655321
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
..++++.++++.+++++++..+|+||+|.|||+|. .||||||||++||||| |||||+||.
T Consensus 553 -~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~------~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~ 625 (686)
T TIGR03797 553 -LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG------TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625 (686)
T ss_pred -CCHHHHHHHHHHcCcHHHHHhccccccccccCCCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 23467889999999999999999999999999954 8999999999999999 999999994
Q ss_pred ---------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ---------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ---------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ....+.||+|+ +|++|+|++.|+++++++.
T Consensus 626 ~i~~~L~~~~~T~IiItHr~~~i~~~D~Ii-vl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 626 IVSESLERLKVTRIVIAHRLSTIRNADRIY-VLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHHhCCeEEEEecChHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 789999999 34455699996 5999999999999998864
No 30
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=337.88 Aligned_cols=208 Identities=13% Similarity=0.166 Sum_probs=171.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 4 KNFVVLKNITKRFGSNT---V---IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVTH 72 (351)
T ss_pred CcEEEEEeEEEEECCeE---E---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 45799999999997532 4 677999999999999999999999999999999999 999999999998851
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.+++++|+...|..+ ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 73 ------~~~~~r~ig~vfQ~~~lfp~~----------tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~------- 128 (351)
T PRK11432 73 ------RSIQQRDICMVFQSYALFPHM----------SLGENVGYGLKML-GVPKEERKQRVKEALELVDLAG------- 128 (351)
T ss_pred ------CCHHHCCEEEEeCCcccCCCC----------CHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 122234567777766555443 4445555543321 2234566788999999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
++++++.+|||||||||+||||| |||+++||. |+|+|+||| +
T Consensus 129 ----------~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 129 ----------FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 57999999999999999999999 999999984 799999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
++..+||||++ |++|+|++.|++++++.+|.+.++..++..
T Consensus 199 e~~~laD~i~v-m~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 239 (351)
T PRK11432 199 EAFAVSDTVIV-MNKGKIMQIGSPQELYRQPASRFMASFMGD 239 (351)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCchHHHHhcCC
Confidence 78899999975 999999999999999999998887777764
No 31
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.6e-43 Score=348.52 Aligned_cols=229 Identities=16% Similarity=0.203 Sum_probs=188.4
Q ss_pred CCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||++.|... ..+++ ++||||+|.+||++||||+|||||||+.++|+|+++.+. ...+|+|.|+|+++.
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~---v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~ 78 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPA---VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLL 78 (539)
T ss_pred CceEEEeceEEEEecCCcceee---eecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchh
Confidence 3479999999999543 23457 555999999999999999999999999999999998442 245899999999886
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.....+...+.++.++++||+++.. +.+ .++.+.|......+......+.++++.++|+++||++..
T Consensus 79 ~l~~~~~r~~rg~~Ia~i~Q~p~~s---------lnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~--- 146 (539)
T COG1123 79 GLSEREMRKLRGKRIAMIFQDPMTS---------LNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPE--- 146 (539)
T ss_pred cCCHHHHHHhccccEEEEecCchhh---------cCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChh---
Confidence 5555555566777889999987653 122 255566666555555445778899999999999998743
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++||++|||||||||.||+|| ||||++||. |+++|+|||
T Consensus 147 ------------~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD 214 (539)
T COG1123 147 ------------RRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214 (539)
T ss_pred ------------hhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 22679999999999999999999 999999984 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 325 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 325 (346)
..+.++||||+ +|++|+++|.|++++++.+|.|+|++.++.+...+
T Consensus 215 l~Vva~~aDrv~-Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~ 261 (539)
T COG1123 215 LGVVAELADRVV-VMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRL 261 (539)
T ss_pred HHHHHHhcCeEE-EEECCEEEEecCHHHHHhccCCcccHHHHhhCCCc
Confidence 57899999996 49999999999999999999999999998875443
No 32
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=338.78 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=168.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 70 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQ--V---IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNE-- 70 (356)
T ss_pred EEEEEeEEEEeCCCCE--E---EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCC--
Confidence 6999999999942222 4 777999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...|..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 71 ----~~~~~r~ig~v~Q~~~lfp~~----------tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~--------- 126 (356)
T PRK11650 71 ----LEPADRDIAMVFQNYALYPHM----------SVRENMAYGLKIR-GMPKAEIEERVAEAARILELEP--------- 126 (356)
T ss_pred ----CCHHHCCEEEEeCCccccCCC----------CHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 111234567777776555443 4445554443221 1234456678999999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++++.+|||||||||+||||| ||||++||. |.|+|+||| +++
T Consensus 127 --------~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea 198 (356)
T PRK11650 127 --------LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA 198 (356)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 57999999999999999999999 999999984 799999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
..+||++++ |++|++++.|++++++.+|.+.++..++..
T Consensus 199 ~~l~D~i~v-l~~G~i~~~g~~~~~~~~p~~~~~~~~~g~ 237 (356)
T PRK11650 199 MTLADRVVV-MNGGVAEQIGTPVEVYEKPASTFVASFIGS 237 (356)
T ss_pred HHhCCEEEE-EeCCEEEEECCHHHHHhCCccHHHHHHcCC
Confidence 899999975 999999999999999999987777666653
No 33
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.2e-43 Score=301.77 Aligned_cols=195 Identities=17% Similarity=0.229 Sum_probs=159.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||.+++|.++|+.-.. .++++|+.||++||+||||||||||+|+|+|+.. |.+|+|+++|+|...
T Consensus 1 ~l~L~~V~~~y~~~~~--------~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~-- 65 (231)
T COG3840 1 MLALDDVRFSYGHLPM--------RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTA-- 65 (231)
T ss_pred CccccceEEeeCcceE--------EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCc--
Confidence 4788999999976432 2899999999999999999999999999999999 999999999999862
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
..-..+-++++||+..+|..+ +|.+|+.+|....-. -..+.+++++.++.++||..
T Consensus 66 ----~~P~~RPVSmlFQEnNLFaHL----------tV~qNigLGl~P~Lk-L~a~~r~~v~~aa~~vGl~~--------- 121 (231)
T COG3840 66 ----SPPAERPVSMLFQENNLFAHL----------TVAQNIGLGLSPGLK-LNAEQREKVEAAAAQVGLAG--------- 121 (231)
T ss_pred ----CCcccCChhhhhhccccchhh----------hhhhhhcccCCcccc-cCHHHHHHHHHHHHHhChhh---------
Confidence 111233445666665555433 555565555431111 13567889999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++.|.+||||||||||+||+| |||+|+||+ +.|++|||| +++
T Consensus 122 --------~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da 193 (231)
T COG3840 122 --------FLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA 193 (231)
T ss_pred --------HhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 67999999999999999999999 999999986 899999999 789
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPES 312 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 312 (346)
.+++||++ ++++|+|...|+.++++.....
T Consensus 194 ~~ia~~~~-fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 194 ARIADRVV-FLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred HHhhhceE-EEeCCEEEeeccHHHHhccCCh
Confidence 99999995 6999999999999999876543
No 34
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.6e-42 Score=337.06 Aligned_cols=208 Identities=13% Similarity=0.148 Sum_probs=170.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT---A---LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDITR 70 (353)
T ss_pred CcEEEEEEEEEEeCCeE---E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 34799999999997632 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.++|++|+...|..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 71 ------~~~~~r~ig~v~Q~~~lfp~~----------tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~------- 126 (353)
T TIGR03265 71 ------LPPQKRDYGIVFQSYALFPNL----------TVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPG------- 126 (353)
T ss_pred ------CCHHHCCEEEEeCCcccCCCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCc-------
Confidence 111234567777776665544 4444444443211 1234566788999999999988
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
++++++.+|||||||||+||||| |||+++||. +.|+|+||| +
T Consensus 127 ----------~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 127 ----------SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 57999999999999999999999 999999983 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
++..+|||+++ |++|++++.|++++++.+|.+.++..++..
T Consensus 197 ea~~l~d~i~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 237 (353)
T TIGR03265 197 EALSMADRIVV-MNHGVIEQVGTPQEIYRHPATPFVADFVGE 237 (353)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHHhcCC
Confidence 78899999975 999999999999999999987777666653
No 35
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-43 Score=373.93 Aligned_cols=202 Identities=8% Similarity=0.082 Sum_probs=168.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|++... .+ |+|+||+|++||.+||+||||||||||+++|+|+++ |++|+|.+||.++.
T Consensus 477 ~I~~~~vsf~y~~~~~-~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~--- 544 (710)
T TIGR03796 477 YVELRNITFGYSPLEP-PL---IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIPRE--- 544 (710)
T ss_pred eEEEEEEEEecCCCCC-Cc---ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEeHH---
Confidence 5999999999975422 14 677999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.+...+.+...++|+|++.++..++++|+.++.. ...++++.++++.+++.+++..+|+||
T Consensus 545 ------------~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~-------~~~~~~i~~al~~~~l~~~i~~lp~gl 605 (710)
T TIGR03796 545 ------------EIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-------TIPDADLVRACKDAAIHDVITSRPGGY 605 (710)
T ss_pred ------------HCCHHHHHhheeEEecCChhhhccHHHHhhCCCC-------CCCHHHHHHHHHHhCCHHHHHhCcCcc
Confidence 1223334444555566666666777777765421 233567889999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec-hhhhcccc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTD 286 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH-~~~~~~aD 286 (346)
+|.|+|+|. .||||||||++||||| |||||+||. ++|+|+||| -.....||
T Consensus 606 ~t~i~e~G~------~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D 679 (710)
T TIGR03796 606 DAELAEGGA------NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCD 679 (710)
T ss_pred cceeccCCC------CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 999999954 8999999999999999 999999994 899999999 34455699
Q ss_pred EEEEEecCCeEeecCCccccccC
Q 019066 287 RARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 287 ri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||+ +|++|++++.|+++++++.
T Consensus 680 ~Ii-vl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 680 EII-VLERGKVVQRGTHEELWAV 701 (710)
T ss_pred EEE-EEeCCEEEEecCHHHHHHc
Confidence 996 4999999999999999864
No 36
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.4e-43 Score=345.58 Aligned_cols=258 Identities=16% Similarity=0.180 Sum_probs=206.7
Q ss_pred CCCcceeeeeccccccccccccccccccccCCCCCCCCc----ccchhhhhhhhHHHHHHhhhhhhhhcc-----CCCcE
Q 019066 1 MGGEKTTSRFFTPGEEIISPVDDFDIPLLSGDDEGSRDS----WDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLT 71 (346)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l 71 (346)
++||+|.+. -+....++||+.++.+. |-.....+.+..|+.+.+.+.|..... ++..|
T Consensus 269 i~ge~t~G~-------------mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L 335 (580)
T COG4618 269 IKGEITPGM-------------MIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGAL 335 (580)
T ss_pred EcCcCCcch-------------hhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCcee
Confidence 356666666 45556788999988887 333345667778899999887775444 34469
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
.++++++.=++.+ ..+ |++|||++.+||.++||||||||||||.|+|.|..+ |.+|.|++||.++++ |
T Consensus 336 ~Ve~l~~~PPg~~-~pi---l~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~-----p~~G~VRLDga~l~q-W-- 403 (580)
T COG4618 336 SVERLTAAPPGQK-KPI---LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGADLRQ-W-- 403 (580)
T ss_pred eEeeeeecCCCCC-Ccc---eecceeEecCCceEEEECCCCccHHHHHHHHHcccc-----cCCCcEEecchhhhc-C--
Confidence 9999998655443 235 666999999999999999999999999999999999 999999999999861 1
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
+....++++||.+||.-+|.|+|.||+.-|. ++...+++.++++..+.++-+.++|+||||
T Consensus 404 -d~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~------------------~~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 404 -DREQLGRHIGYLPQDVELFDGTIAENIARFG------------------EEADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred -CHHHhccccCcCcccceecCCcHHHHHHhcc------------------ccCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 1112245666766666666666555554221 244567889999999999999999999999
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhccc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 285 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~~a 285 (346)
.||+.|. .||||||||+++|||| |||-|+||. |.|+|+||| ..+...+
T Consensus 465 ~iG~~G~------~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 465 RIGEGGA------TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred ccCCCCC------CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 9999954 9999999999999999 999999994 999999999 6788889
Q ss_pred cEEEEEecCCeEeecCCccccccC
Q 019066 286 DRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 286 Dri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|.+ |++|++-..|+.+|++.+
T Consensus 539 Dkilv-l~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 539 DKILV-LQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ceeee-ecCChHHhcCCHHHHHHH
Confidence 99975 999999999999998865
No 37
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.3e-43 Score=373.46 Aligned_cols=224 Identities=12% Similarity=0.122 Sum_probs=181.1
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
...+|+.++++.+++.... ....|+++||+|+|+++.. + |+|+||+|++||++||+||||||||||+
T Consensus 443 ~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~--i---L~~isl~i~~G~~vaIvG~SGsGKSTLl 517 (708)
T TIGR01193 443 VANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--I---LSDISLTIKMNSKTTIVGMSGSGKSTLA 517 (708)
T ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCc--c---eeceeEEECCCCEEEEECCCCCCHHHHH
Confidence 3346677877655443211 1235999999999975443 4 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
++|+|+++ |++|+|++||.++. .+...+.+...++|+|++.++..++++|+.++..
T Consensus 518 klL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~---- 573 (708)
T TIGR01193 518 KLLVGFFQ-----ARSGEILLNGFSLK---------------DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK---- 573 (708)
T ss_pred HHHhccCC-----CCCcEEEECCEEHH---------------HcCHHHHHHheEEEecCceehhHHHHHHHhccCC----
Confidence 99999999 99999999999986 1233334445555666666777788888876521
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
....++++.++++.+++++++..+|+||+|.|+|.|. .||||||||++||||| |||||+||.
T Consensus 574 --~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~------~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 574 --ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS------SISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred --CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC------CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 1223467889999999999999999999999999854 8999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ......||+|++ |++|++++.|++++++..
T Consensus 646 te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~-l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 646 TEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIV-LDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEE-EECCEEEEECCHHHHHhc
Confidence 789999999 455567999964 999999999999999865
No 38
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-43 Score=350.44 Aligned_cols=219 Identities=16% Similarity=0.095 Sum_probs=176.3
Q ss_pred HHHHHHhhhhhhhhcc-------CCCc--EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 51 AVFREVLQSYDQLRTR-------IGSL--TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 51 ~~~~~~~~~~~~~~~~-------~~~~--l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
+.++..++.+++.... ..+- ++++|+++.|++++. + ++|+||++++|+.+||||+||||||||+++
T Consensus 292 d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~--~---l~~l~~t~~~g~~talvG~SGaGKSTLl~l 366 (559)
T COG4988 292 DKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKP--A---LSDLNLTIKAGQLTALVGASGAGKSTLLNL 366 (559)
T ss_pred HHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCc--c---cCCceeEecCCcEEEEECCCCCCHHHHHHH
Confidence 3456666655543222 1123 445599999988764 4 666999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+++ |++|+|.+||.++. .....+.+....+|.|++.+++.++++|+.++..
T Consensus 367 L~G~~~-----~~~G~I~vng~~l~---------------~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~------ 420 (559)
T COG4988 367 LLGFLA-----PTQGEIRVNGIDLR---------------DLSPEAWRKQISWVSQNPYLFAGTIRENILLARP------ 420 (559)
T ss_pred HhCcCC-----CCCceEEECCcccc---------------ccCHHHHHhHeeeeCCCCccccccHHHHhhccCC------
Confidence 999999 99999999999886 1223333444455666666777777777776432
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...++++.++++.+++.+++.. |+|+||++||+|. .|||||+||+++|||| ||||++||.
T Consensus 421 -~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~------~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE 492 (559)
T COG4988 421 -DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGA------GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492 (559)
T ss_pred -cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCC------CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHH
Confidence 3446788999999999999988 9999999999965 9999999999999999 999999983
Q ss_pred ------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| .....-||+|+ +|++|++++.|.++++..+
T Consensus 493 ~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~-vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 493 QIILQALQELAKQKTVLVITHRLEDAADADRIV-VLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEE-EecCCceeccCCHHHHhhc
Confidence 899999999 34555599996 5999999999999998765
No 39
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.6e-42 Score=336.57 Aligned_cols=210 Identities=13% Similarity=0.160 Sum_probs=172.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 12 ~~~L~l~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 12 SPLVELRGISKSFDGKE---V---ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDITH 80 (375)
T ss_pred CceEEEEEEEEEECCeE---E---EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 56799999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.++|++|+...|..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 81 ------~~~~~r~ig~vfQ~~~lfp~l----------tv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~------- 136 (375)
T PRK09452 81 ------VPAENRHVNTVFQSYALFPHM----------TVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEE------- 136 (375)
T ss_pred ------CCHHHCCEEEEecCcccCCCC----------CHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 111234567777776655443 4445554443211 1234455678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+++++|.+|||||||||+||||| |||+++||. |.|+|+||| +
T Consensus 137 ----------~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 137 ----------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 57999999999999999999999 999999984 799999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
++..+||||++ |++|+|++.|++++++.+|.+.++..++...+
T Consensus 207 ea~~laDri~v-l~~G~i~~~g~~~~i~~~p~~~~~a~~~g~~n 249 (375)
T PRK09452 207 EALTMSDRIVV-MRDGRIEQDGTPREIYEEPKNLFVARFIGEIN 249 (375)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhcCccc
Confidence 78899999975 99999999999999999999888888776443
No 40
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.9e-43 Score=370.11 Aligned_cols=224 Identities=16% Similarity=0.160 Sum_probs=181.4
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
...+|+.++++.+++.... ....|+++||+|+|++... .+ |+|+||+|++||++||+|+||||||||+
T Consensus 433 ~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~-~v---L~~i~l~i~~G~~iaIvG~sGsGKSTLl 508 (694)
T TIGR03375 433 TALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQET-PA---LDNVSLTIRPGEKVAIIGRIGSGKSTLL 508 (694)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCc-cc---eeeeeEEECCCCEEEEECCCCCCHHHHH
Confidence 3446678888765542211 1235999999999975331 13 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
++|+|+|+ |++|+|.+||.++. .+...+.+...++|+|++.++..++++|+.++..
T Consensus 509 klL~gl~~-----p~~G~I~idg~~l~---------------~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~---- 564 (694)
T TIGR03375 509 KLLLGLYQ-----PTEGSVLLDGVDIR---------------QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP---- 564 (694)
T ss_pred HHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC----
Confidence 99999999 99999999999986 1233344445566666677777788888876432
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
...++++.++++.+++.+++..+|+||+|.|||+|. .||||||||++||||| |||||+||.
T Consensus 565 ---~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~------~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~ 635 (694)
T TIGR03375 565 ---YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGR------SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635 (694)
T ss_pred ---CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 223567889999999999999999999999999954 8999999999999999 999999984
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| -...+.||+|+ +|++|++++.|+++++++.
T Consensus 636 te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~ii-vl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 636 SEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRII-VMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EEeCCEEEeeCCHHHHHHH
Confidence 799999999 34556799996 4999999999999988754
No 41
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=319.25 Aligned_cols=201 Identities=18% Similarity=0.249 Sum_probs=165.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+++++++++++|+++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|.|.++|.++..
T Consensus 2 ~~i~~~~l~~~y~~~~~--~---l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~~- 70 (235)
T COG1122 2 RMIEAENLSFRYPGRKA--A---LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTSS- 70 (235)
T ss_pred ceEEEEEEEEEcCCCce--e---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeeccc-
Confidence 46899999999987633 4 777999999999999999999999999999999999 999999999988641
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.......++.++++||++-. .++..+|.+.++|++...+. +.++.++++.++++.+++.+
T Consensus 71 --~~~~~~~~~~vG~VfQnpd~---------q~~~~tV~~evafg~~n~g~-~~~e~~~rv~~~l~~vgl~~-------- 130 (235)
T COG1122 71 --EKSLLELRQKVGLVFQNPDD---------QLFGPTVEDEVAFGLENLGL-PREEIEERVAEALELVGLEE-------- 130 (235)
T ss_pred --hhhHHHhhcceEEEEECccc---------ccccCcHHHHHhhchhhcCC-CHHHHHHHHHHHHHHcCchh--------
Confidence 00111124445555555422 23444677777777765443 34578899999999999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++.|++|||||||||+||.+| |||||+||+ |+|+|++|| +.
T Consensus 131 ---------~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 131 ---------LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred ---------hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 57999999999999999999999 999999985 689999999 67
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+..+|||+++ |++|+++.+|++.+++.+.
T Consensus 202 ~~~~ad~v~v-l~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 202 VLEYADRVVV-LDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHhhCCEEEE-EECCEEeecCCHHHHhhhh
Confidence 9999999964 9999999999999888764
No 42
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-42 Score=331.17 Aligned_cols=225 Identities=13% Similarity=0.128 Sum_probs=170.9
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||++.|+... .+.+ |+||||+|++||+++|+|+||||||||+++|+|++++. ..+++|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRA---VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCCCccEEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECCcC
Confidence 689999999997532 1236 66699999999999999999999999999999999621 114899999999997522
Q ss_pred ccccccccCCCCccceeecccc--cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~--~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
...+...+.++.+++++|++.. ...+ ++.+++......+......+.++++.++++.+||.+..
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~----------~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~---- 144 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCY----------TVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA---- 144 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH----
Confidence 2111122334568888888642 1111 12222222211111123455678899999999997521
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..+++++++|||||+||++||||| ||||++||. |.|+|+|||
T Consensus 145 ----------~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl 214 (326)
T PRK11022 145 ----------SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL 214 (326)
T ss_pred ----------HHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 146899999999999999999999 999999983 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+.+.++||||++ |++|+|++.|++++++.+|.++|++.++.+..
T Consensus 215 ~~~~~~adri~v-m~~G~ive~g~~~~~~~~p~hpyt~~ll~~~~ 258 (326)
T PRK11022 215 ALVAEAAHKIIV-MYAGQVVETGKAHDIFRAPRHPYTQALLRALP 258 (326)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHHhhCCCChHHHHHHHhCc
Confidence 467789999975 99999999999999999999999998887653
No 43
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.9e-43 Score=362.97 Aligned_cols=222 Identities=12% Similarity=0.087 Sum_probs=175.8
Q ss_pred hhhHHHHHHhhhhhhhhcc-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
...+++.++++.+++.... ....|+++|++|+|+++.. + |+|+||+|++||++||+|+||||||||+++|
T Consensus 313 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~--i---l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL 387 (592)
T PRK10790 313 VAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNL--V---LQNINLSVPSRGFVALVGHTGSGKSTLASLL 387 (592)
T ss_pred HHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCCc--e---eeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3345677777654332111 1234999999999975433 4 7779999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.+||.++. . +.....+..+++|+|++.+|..++++|+.++.
T Consensus 388 ~gl~~-----p~~G~I~idg~~i~------~---------~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-------- 439 (592)
T PRK10790 388 MGYYP-----LTEGEIRLDGRPLS------S---------LSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-------- 439 (592)
T ss_pred hcccC-----CCCceEEECCEEhh------h---------CCHHHHHhheEEEccCCccccchHHHHHHhCC--------
Confidence 99999 99999999999986 1 22233333444455555555666667776542
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
...++++.++++.+|+.+.+.++|+||+|.|+|.|. .||||||||++||||| |||||+||+
T Consensus 440 ~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~------~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~ 513 (592)
T PRK10790 440 DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN------NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513 (592)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCC------CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 123467889999999999999999999999999854 8999999999999999 999999984
Q ss_pred -----------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -----------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++++.
T Consensus 514 ~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii-~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 514 AIQQALAAVREHTTLVVIAHRLSTIVEADTIL-VLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEEcCHHHHHhC
Confidence 789999999 44555699996 5999999999999999866
No 44
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.5e-42 Score=332.01 Aligned_cols=220 Identities=13% Similarity=0.169 Sum_probs=172.0
Q ss_pred CCcEEEeeeEEEeCCC----------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCce
Q 019066 68 GSLTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 137 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~----------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~ 137 (346)
.++|+++||+++|+.+ ..+.+ ++||||+|++||+++|+|+||||||||+++|+|+++ |++|+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G~ 77 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKA---VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDGE 77 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCcE
Confidence 5789999999999631 11336 666999999999999999999999999999999999 99999
Q ss_pred EEECceeCCCcccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhcc-CCChHHHHHHHHHHHH
Q 019066 138 VTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAH 214 (346)
Q Consensus 138 I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~ 214 (346)
|+++|+++...... .....++.++|++|++. .+..+ ++.+|+.++...+. .....+.++++.++++
T Consensus 78 I~~~G~~i~~~~~~-~~~~~r~~i~~v~Q~~~~~l~p~~----------tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 146 (331)
T PRK15079 78 VAWLGKDLLGMKDD-EWRAVRSDIQMIFQDPLASLNPRM----------TIGEIIAEPLRTYHPKLSRQEVKDRVKAMML 146 (331)
T ss_pred EEECCEECCcCCHH-HHHHHhCceEEEecCchhhcCCCC----------CHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 99999998522111 11112345777777753 22222 34444444332221 1234566778899999
Q ss_pred HcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------
Q 019066 215 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 269 (346)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------- 269 (346)
.+++.+. .+++++++|||||+||++||||| ||||++||.
T Consensus 147 ~vgl~~~----------------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (331)
T PRK15079 147 KVGLLPN----------------LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210 (331)
T ss_pred HcCCChH----------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 9999642 46899999999999999999999 999999983
Q ss_pred -CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 270 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 270 -g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
|.|+|+||| +.+.++||||++ |++|+|++.|++++++.+|.++|++.++....
T Consensus 211 ~~~til~iTHdl~~~~~~~dri~v-l~~G~ive~g~~~~i~~~~~~py~~~l~~~~~ 266 (331)
T PRK15079 211 MGLSLIFIAHDLAVVKHISDRVLV-MYLGHAVELGTYDEVYHNPLHPYTKALMSAVP 266 (331)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEcCHHHHHcCCCCHHHHHHHhhCC
Confidence 789999999 568889999975 99999999999999999999999988887654
No 45
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.3e-42 Score=332.85 Aligned_cols=208 Identities=14% Similarity=0.214 Sum_probs=169.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 2 ~L~i~~l~~~~~~~~---~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~-- 68 (353)
T PRK10851 2 SIEIANIKKSFGRTQ---V---LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSR-- 68 (353)
T ss_pred EEEEEEEEEEeCCeE---E---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 489999999997632 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
....++.++|++|+...+..+ ++.+|+.++.... ...+..+.++++.++++.++|.+
T Consensus 69 ----~~~~~r~i~~v~Q~~~l~p~~----------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------ 128 (353)
T PRK10851 69 ----LHARDRKVGFVFQHYALFRHM----------TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH------ 128 (353)
T ss_pred ----CCHHHCCEEEEecCcccCCCC----------cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch------
Confidence 111234567777776555443 4445554443211 11233456778999999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
++++++.+||||||||++||||| ||||++||. ++|+|+|||
T Consensus 129 -----------~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 129 -----------LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56999999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 322 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 322 (346)
+++..+||||++ |++|++++.|++++++.+|.+.++..++...
T Consensus 198 ~ea~~~~Dri~v-l~~G~i~~~g~~~~i~~~p~~~~~~~~~g~~ 240 (353)
T PRK10851 198 EEAMEVADRVVV-MSQGNIEQAGTPDQVWREPATRFVLEFMGEV 240 (353)
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHhcCcc
Confidence 578999999975 9999999999999999999888877776643
No 46
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.6e-42 Score=331.18 Aligned_cols=224 Identities=13% Similarity=0.140 Sum_probs=171.6
Q ss_pred CCCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC---CceEEECc
Q 019066 67 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNS 142 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~---~G~I~~~g 142 (346)
..++|+++||++.|+.. ..+.+ |+||||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-----p~~~~sG~I~~~G 80 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTA---VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-----ANGRIGGSATFNG 80 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEE---EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCCCeEEEECC
Confidence 35689999999999532 12336 666999999999999999999999999999999998 74 99999999
Q ss_pred eeCCCcccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 143 SVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 143 ~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+++......+...+.++.++|++|++. ....+ ++.+++.+....+......+..+++.++++.++|.+
T Consensus 81 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~----------~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~ 150 (330)
T PRK09473 81 REILNLPEKELNKLRAEQISMIFQDPMTSLNPYM----------RVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150 (330)
T ss_pred EECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC
Confidence 998532111111223456788888863 22222 222333222211212234556678899999999975
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
.. ..+++++++|||||+||++||||| ||||++||. |.|+|
T Consensus 151 ~~--------------~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til 216 (330)
T PRK09473 151 AR--------------KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAII 216 (330)
T ss_pred hH--------------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 11 035789999999999999999999 999999983 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+||| +.+.++||||++ |++|+|++.|++++++.+|.++|++.++.+..
T Consensus 217 ~iTHdl~~~~~~~Dri~v-m~~G~ive~g~~~~i~~~p~~pyt~~l~~~~~ 266 (330)
T PRK09473 217 MITHDLGVVAGICDKVLV-MYAGRTMEYGNARDVFYQPSHPYSIGLLNAVP 266 (330)
T ss_pred EEECCHHHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 9999 467789999975 99999999999999999999999999887654
No 47
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-42 Score=330.02 Aligned_cols=220 Identities=14% Similarity=0.157 Sum_probs=171.1
Q ss_pred CCcEEEeeeEEEeCCC-------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 68 GSLTDAKNKILSYTPG-------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~-------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
.++|+++||++.|+.. ..+.+ |+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~ 74 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKA---LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYY 74 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEE
Confidence 4579999999999631 11346 666999999999999999999999999999999999 99999999
Q ss_pred CceeCCCcccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCC
Q 019066 141 NSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 141 ~g~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l 218 (346)
+|+++...... .....++.++|++|++. ....+ ++.+++.++...+......+.++++.++++.+||
T Consensus 75 ~g~~l~~~~~~-~~~~~r~~i~~v~Q~~~~~l~p~~----------~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL 143 (327)
T PRK11308 75 QGQDLLKADPE-AQKLLRQKIQIVFQNPYGSLNPRK----------KVGQILEEPLLINTSLSAAERREKALAMMAKVGL 143 (327)
T ss_pred CCEEcCcCCHH-HHHHHhCCEEEEEcCchhhcCCcc----------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCC
Confidence 99997522111 11122446788888863 12111 2333333222211112344566789999999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cce
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 272 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~t 272 (346)
.+. .+++++++|||||+||++||||| ||||++||. |.|
T Consensus 144 ~~~----------------~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~t 207 (327)
T PRK11308 144 RPE----------------HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLS 207 (327)
T ss_pred ChH----------------HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 742 36899999999999999999999 999999983 799
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+|+||| ..+.++||+|++ |++|+|++.|++++++.+|.++|++.++.+..
T Consensus 208 il~iTHdl~~~~~~adrv~v-m~~G~ive~g~~~~~~~~p~hpyt~~ll~~~p 259 (327)
T PRK11308 208 YVFISHDLSVVEHIADEVMV-MYLGRCVEKGTKEQIFNNPRHPYTQALLSATP 259 (327)
T ss_pred EEEEeCCHHHHHHhCCEEEE-EECCEEEEECCHHHHhcCCCCHHHHHHHHhCC
Confidence 999999 567789999975 99999999999999999999999998887653
No 48
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=340.38 Aligned_cols=224 Identities=13% Similarity=0.161 Sum_probs=188.5
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
.+..|++++.+++++...+ ....++++||+|+|++... .+ |+|+||++++||.+||+|+||||||||+.+
T Consensus 308 ~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~-~~---L~~~~l~l~~GEkvAIlG~SGsGKSTllqL 383 (573)
T COG4987 308 ASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQT-KA---LKNFNLTLAQGEKVAILGRSGSGKSTLLQL 383 (573)
T ss_pred HHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCcc-ch---hhccceeecCCCeEEEECCCCCCHHHHHHH
Confidence 3456788888887776433 1116999999999987653 25 666999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|.|.++ |++|+|.++|.++. .+..++.+....++.|.+.+|..++++|+.++..
T Consensus 384 l~~~~~-----~~~G~i~~~g~~~~---------------~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~------ 437 (573)
T COG4987 384 LAGAWD-----PQQGSITLNGVEIA---------------SLDEQALRETISVLTQRVHLFSGTLRDNLRLANP------ 437 (573)
T ss_pred HHhccC-----CCCCeeeECCcChh---------------hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC------
Confidence 999999 99999999999986 2444445555566777888888888899876543
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...++.+.++++++||++.++..|+|++|.|||.|. .|||||+||++|||+| ||||.|||+
T Consensus 438 -~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~------~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE 510 (573)
T COG4987 438 -DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR------RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510 (573)
T ss_pred -CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCC------cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhH
Confidence 345678899999999999999999999999999965 9999999999999998 999999995
Q ss_pred ------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+|||+ .-.+.||||+ +|++|+++++|++.+++.+
T Consensus 511 ~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi-vl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 511 RQVLALLFEHAEGKTLLMVTHRLRGLERMDRII-VLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHHHHhcCCeEEEEecccccHhhcCEEE-EEECCeeeecCCHHhhhcc
Confidence 9999999994 2345599996 5999999999999999873
No 49
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=312.12 Aligned_cols=209 Identities=18% Similarity=0.253 Sum_probs=173.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+++++++|+++|++ .+| ++||||+|++||+++||||||||||||+|+|+|+|+ |++|+|.++|+++..
T Consensus 3 ~lL~v~~l~k~FGG---l~A---l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it~- 70 (250)
T COG0411 3 PLLEVRGLSKRFGG---LTA---VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDITG- 70 (250)
T ss_pred ceeeeccceeecCC---EEE---EeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccCC-
Confidence 57899999999987 457 555999999999999999999999999999999999 999999999999873
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.+.+.+.+..+...||..+.|.++ |.+|+......-.. +. +.... ......+..+++.++|+.+||.+
T Consensus 71 --l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~-~~-~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~----- 141 (250)
T COG0411 71 --LPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG-LS-GLLGRPRARKEEREARERARELLEFVGLGE----- 141 (250)
T ss_pred --CCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhh-hh-hhhccccchhhHHHHHHHHHHHHHHcCCch-----
Confidence 334455677788889999999888 88888765431101 11 11111 11235677899999999999998
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..+++..+||+|||+|+.||||| |||.+||.+ |.|+++|.|
T Consensus 142 ------------~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd 209 (250)
T COG0411 142 ------------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209 (250)
T ss_pred ------------hhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 67999999999999999999999 999999753 699999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
+.+..+||||+| |+.|+++++|+|+++..+|.
T Consensus 210 M~~Vm~l~dri~V-l~~G~~IAeG~P~eV~~dp~ 242 (250)
T COG0411 210 MKLVMGLADRIVV-LNYGEVIAEGTPEEVRNNPR 242 (250)
T ss_pred cHHHhhhccEEEe-ccCCcCcccCCHHHHhcCHH
Confidence 689999999975 99999999999999988865
No 50
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.5e-42 Score=356.19 Aligned_cols=223 Identities=13% Similarity=0.162 Sum_probs=176.7
Q ss_pred hHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 50 DAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
..++.++++.+++.... ....|+++||+|+|+++.. .+ |+|+||+|++||.+||+|+||||||||+++|+
T Consensus 315 ~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~-~i---l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 315 CQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEV-PA---LRNINFKIPAGKTVALVGRSGSGKSTIANLLT 390 (582)
T ss_pred HHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCC-cc---ccCceEEeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 45667777554432111 1225999999999976422 14 77799999999999999999999999999999
Q ss_pred hhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChH
Q 019066 124 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS 203 (346)
Q Consensus 124 gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~ 203 (346)
|+++ |++|+|++||.++. . +...+.+...++++|++.++..++++|+.++.. ..
T Consensus 391 gl~~-----p~~G~I~i~g~~i~------~---------~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------~~ 444 (582)
T PRK11176 391 RFYD-----IDEGEILLDGHDLR------D---------YTLASLRNQVALVSQNVHLFNDTIANNIAYART------EQ 444 (582)
T ss_pred hccC-----CCCceEEECCEEhh------h---------cCHHHHHhhceEEccCceeecchHHHHHhcCCC------CC
Confidence 9999 99999999999986 1 222233334445555555666677777765421 12
Q ss_pred HHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----
Q 019066 204 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----- 269 (346)
Q Consensus 204 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----- 269 (346)
..++++.++++.+++.+++.++|+|++|.|||+|. +||||||||++||||| |||||+||+
T Consensus 445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~------~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~ 518 (582)
T PRK11176 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV------LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518 (582)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC------cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHH
Confidence 24567889999999999999999999999999854 8999999999999999 999999985
Q ss_pred ----------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ----------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ....+.||+|+ +|++|++++.|+++++++.
T Consensus 519 i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii-~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 519 IQAALDELQKNRTSLVIAHRLSTIEKADEIL-VVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEeCCHHHHHhC
Confidence 789999999 45566799996 5999999999999999866
No 51
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-42 Score=314.43 Aligned_cols=180 Identities=20% Similarity=0.312 Sum_probs=158.7
Q ss_pred CCcEEEeeeEEEeCCCC------ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 68 GSLTDAKNKILSYTPGA------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~------~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
.++++++||++.|..+. .++|+++ |||+|++||+++|||+||||||||.|+|.|+++ |++|+|+|+
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~---Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~ 73 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDG---VSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFE 73 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecc---eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEc
Confidence 45799999999996432 2457555 999999999999999999999999999999999 999999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
|+++.. +. ..+..+++.++|+.+|+.++
T Consensus 74 g~~i~~---------------~~-------------------------------------~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 74 GKDITK---------------LS-------------------------------------KEERRERVLELLEKVGLPEE 101 (268)
T ss_pred Ccchhh---------------cc-------------------------------------hhHHHHHHHHHHHHhCCCHH
Confidence 998751 10 13456789999999999875
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 275 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvii 275 (346)
.+++||++|||||+||++||||| |||+|+||- |.|.++
T Consensus 102 ----------------~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lF 165 (268)
T COG4608 102 ----------------FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLF 165 (268)
T ss_pred ----------------HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEE
Confidence 47999999999999999999999 999999983 999999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 324 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 324 (346)
||| ..+..+||||+| |+.|+||+.|+.++++.+|.|+||+.++.+...
T Consensus 166 IsHDL~vv~~isdri~V-My~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~ 215 (268)
T COG4608 166 ISHDLSVVRYISDRIAV-MYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred EEEEHHhhhhhcccEEE-EecCceeEecCHHHHhhCCCCHHHHHHHHhCCc
Confidence 999 468899999986 999999999999999999999999999997543
No 52
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.7e-42 Score=363.48 Aligned_cols=225 Identities=12% Similarity=0.123 Sum_probs=177.3
Q ss_pred hhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
..+++++.++.+++.... ....|+++||+|+|++.....+ |+|+||+|++||+++|+||||||||||+++
T Consensus 450 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 526 (711)
T TIGR00958 450 ASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV---LKGLTFTLHPGEVVALVGPSGSGKSTVAAL 526 (711)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc---ccCceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 345677777665543211 1235999999999975321124 677999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|.|+++ |++|+|++||+++. + +...+.+...++|+|++.++..++++|+.++..
T Consensus 527 L~gl~~-----p~~G~I~idg~~i~------~---------~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~------ 580 (711)
T TIGR00958 527 LQNLYQ-----PTGGQVLLDGVPLV------Q---------YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT------ 580 (711)
T ss_pred HHhccC-----CCCCEEEECCEEHH------h---------cCHHHHHhhceEEecCccccccCHHHHHhcCCC------
Confidence 999999 99999999999986 1 222223333444555555556667777766532
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...++++.++++.+++++++.++|+||+|.+||+|. +||||||||++||||| |||||+||.
T Consensus 581 -~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~------~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te 653 (711)
T TIGR00958 581 -DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS------QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653 (711)
T ss_pred -CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC------cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHH
Confidence 122567889999999999999999999999999854 8999999999999999 999999984
Q ss_pred ----------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 ----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 ----------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| -.....||+|+ +|++|+|++.|+|++++++.
T Consensus 654 ~~i~~~~~~~~~TvIiItHrl~~i~~aD~Ii-vL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 654 QLLQESRSRASRTVLLIAHRLSTVERADQIL-VLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred HHHHHhhccCCCeEEEEeccHHHHHhCCEEE-EEECCEEEEeeCHHHHHhCC
Confidence 799999999 34455699996 59999999999999998763
No 53
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.4e-42 Score=354.00 Aligned_cols=224 Identities=12% Similarity=0.123 Sum_probs=177.9
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+.+|+.++++.+++..+. ..+.|+++||+|+|++++. .+ |+|+||+|++||+++|+||||||||||++
T Consensus 309 ~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~-~i---l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 384 (574)
T PRK11160 309 ASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQ-PV---LKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384 (574)
T ss_pred HHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCC-cc---eecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 3456778888766543211 1235999999999975421 14 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|++||.++. + +...+.+...++|+|++.++..++.+|+.++..
T Consensus 385 ll~g~~~-----p~~G~I~i~g~~i~------~---------~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~----- 439 (574)
T PRK11160 385 LLTRAWD-----PQQGEILLNGQPIA------D---------YSEAALRQAISVVSQRVHLFSATLRDNLLLAAP----- 439 (574)
T ss_pred HHhcCCC-----CCCceEEECCEEhh------h---------CCHHHHHhheeEEcccchhhcccHHHHhhcCCC-----
Confidence 9999999 99999999999986 1 222233334444555556666677777766432
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...++++.++++.+++++++.. |+||+|.|||++. .||||||||++||||| ||||++||.
T Consensus 440 --~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~------~LSgGqrqRialARall~~~~ililDE~ts~lD~~t 510 (574)
T PRK11160 440 --NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGR------QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510 (574)
T ss_pred --ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2345678899999999999999 9999999999954 8999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++++..
T Consensus 511 ~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 511 ERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC-VMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEE-EEeCCeEEEeCCHHHHHhcC
Confidence 799999999 33445599996 59999999999999998653
No 54
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=333.11 Aligned_cols=209 Identities=14% Similarity=0.171 Sum_probs=171.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 17 ~~~l~l~~v~~~~~~~~---~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~ 85 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQH---A---VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLSH 85 (377)
T ss_pred CceEEEEeEEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 55799999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
....++.++|++|+...|..+ |.+|+ .++.... ..+..+.++++.++++.+++.+
T Consensus 86 ------~~~~~r~ig~vfQ~~~lfp~ltv~eNi-----------~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~------ 141 (377)
T PRK11607 86 ------VPPYQRPINMMFQSYALFPHMTVEQNI-----------AFGLKQD-KLPKAEIASRVNEMLGLVHMQE------ 141 (377)
T ss_pred ------CCHHHCCEEEEeCCCccCCCCCHHHHH-----------HHHHHHc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 112244677777777666554 55554 4433211 1234556778999999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
+.++++.+|||||||||+||||| |||+++||. |.|+|+|||
T Consensus 142 -----------~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 210 (377)
T PRK11607 142 -----------FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210 (377)
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 57999999999999999999999 999999984 899999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+++..+|||+++ |++|++++.|++++++.+|.+.++..++...+
T Consensus 211 ~ea~~laDri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~~n 254 (377)
T PRK11607 211 EEAMTMAGRIAI-MNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVN 254 (377)
T ss_pred HHHHHhCCEEEE-EeCCEEEEEcCHHHHHhCCccHHHHHhcCccc
Confidence 578899999975 99999999999999999998887777776433
No 55
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.2e-41 Score=329.77 Aligned_cols=206 Identities=15% Similarity=0.184 Sum_probs=167.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC--ceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~--G~I~~~g~~i~~ 147 (346)
.|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 5 GIRIDHLRVAYGANT---V---LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEEECCeE---E---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECCC
Confidence 489999999997532 4 777999999999999999999999999999999999 999 999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 74 ------~~~~~r~ig~vfQ~~~l~p~~----------tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------- 129 (362)
T TIGR03258 74 ------APPHKRGLALLFQNYALFPHL----------KVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGD------- 129 (362)
T ss_pred ------CCHHHCCEEEEECCcccCCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCc-------
Confidence 111234567777776655443 4444444443221 1234556778999999999988
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC------------------CceEEEEec--
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH-- 278 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tviiiTH-- 278 (346)
++++++.+|||||||||+||||| ||||++||. |.|+|+|||
T Consensus 130 ----------~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 130 ----------AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 57999999999999999999999 999999873 579999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+++..+||||++ |++|++++.|++++++.+|.+.++..++..
T Consensus 200 ~ea~~l~dri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 241 (362)
T TIGR03258 200 DDALTLADKAGI-MKDGRLAAHGEPQALYDAPADGFAAEFLGA 241 (362)
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHHhCcCcHHHHHhhCc
Confidence 578899999975 999999999999999999987776666663
No 56
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=312.50 Aligned_cols=199 Identities=18% Similarity=0.237 Sum_probs=160.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++. . + |+||||+|++|++++||||||||||||+|+|+|+++ |.+|+|.+.|++...
T Consensus 2 ~~~i~v~nl~v~y~~~-~--v---l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~ 70 (254)
T COG1121 2 MPMIEVENLTVSYGNR-P--V---LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRK 70 (254)
T ss_pred CcEEEEeeeEEEECCE-e--e---eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccc
Confidence 4579999999999865 3 4 777999999999999999999999999999999999 999999999987641
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
...+..++|++|... +. .-||.+|++-+..+... +.....+..++++.++|+++|+.+
T Consensus 71 -------~~~~~~IgYVPQ~~~-~d-------~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~---- 131 (254)
T COG1121 71 -------RRKRLRIGYVPQKSS-VD-------RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED---- 131 (254)
T ss_pred -------cccCCeEEEcCcccc-cC-------CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh----
Confidence 112456788888651 11 12334555555554221 111223455789999999999998
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
+.++...+|||||+|||.||||| ||||+++|. |+||++|||
T Consensus 132 -------------~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 132 -------------LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred -------------hhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67999999999999999999999 999999884 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
..+..+||+| + +=+++++..|++++++..+.
T Consensus 199 L~~v~~~~D~v-i-~Ln~~~~~~G~~~~~~~~~~ 230 (254)
T COG1121 199 LGLVMAYFDRV-I-CLNRHLIASGPPEEVLTEEN 230 (254)
T ss_pred cHHhHhhCCEE-E-EEcCeeEeccChhhccCHHH
Confidence 5789999999 4 55889999999999887543
No 57
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2e-41 Score=322.70 Aligned_cols=227 Identities=16% Similarity=0.188 Sum_probs=194.9
Q ss_pred CCcEEEeeeEEEeCC-CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~-~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++|+++.|.. +..+.++++ |||+|.+||++||||+||||||-..+.|+++++.+.-..-+|+|.|+|.++.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~---isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKG---ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CcceeeeccEEEEecCCcceEeecc---ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 568999999999953 233557555 9999999999999999999999999999999986554456799999999987
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
..+..+...+++.+|+++||+++.. +.+ .++...+......++.....+.++++.++|+.+|+.+--
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtS---------LNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--- 148 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTS---------LNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--- 148 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccc---------cCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh---
Confidence 5555555667777888888888753 222 277778888888888888899999999999999997521
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..+++||++|||||||||+||.|| ||||.+||- |+++++|||
T Consensus 149 -----------~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHD 217 (534)
T COG4172 149 -----------KRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217 (534)
T ss_pred -----------hhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEecc
Confidence 167999999999999999999999 999999983 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
..+.++||||+| |..|+++|.|.++++|..|.|+||+.++.+
T Consensus 218 L~iVr~~ADrV~V-M~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 218 LGIVRKFADRVYV-MQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred HHHHHHhhhhEEE-EeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 578999999975 999999999999999999999999999875
No 58
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=325.12 Aligned_cols=226 Identities=13% Similarity=0.209 Sum_probs=169.1
Q ss_pred CcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
++|+++||+++|+.. ....+ |+||||+|.+||+++|+|+||||||||+++|+|++++. ..|++|+|+|+|+++..
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKA---VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLLR 77 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECCc
Confidence 479999999999532 11235 66699999999999999999999999999999998621 11589999999998752
Q ss_pred cccccccccCCCCccceeeccccc--ccchhhchHhhHHHHHhhhhcchhhc---c--CCChHHHHHHHHHHHHHcCCCc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSL--SDDASDNINMIKLWIMEGVRHGELVI---R--RSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~--~~~v~qn~~~~~~~v~~~i~~~~~~~---~--~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
....+...+.++.++|++|++... ..+ ++.+++.+..... . .......++++.++|+.+||.+
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~ 147 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSE----------RVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchhcCccc----------cHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC
Confidence 221111123345678888886421 111 2333332211100 0 0011344578899999999975
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
.. ..+++++++|||||+||++||||| ||||++||. |.|+|
T Consensus 148 ~~--------------~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii 213 (330)
T PRK15093 148 HK--------------DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTIL 213 (330)
T ss_pred hH--------------HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 21 035889999999999999999999 999999983 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+||| ..+.++||||++ |++|+|++.|++++++.+|.++|++.++....
T Consensus 214 ~itHdl~~v~~~~dri~v-m~~G~ive~g~~~~i~~~p~~~y~~~ll~~~~ 263 (330)
T PRK15093 214 LISHDLQMLSQWADKINV-LYCGQTVETAPSKELVTTPHHPYTQALIRAIP 263 (330)
T ss_pred EEECCHHHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 9999 578889999975 99999999999999999999999988887654
No 59
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-41 Score=326.96 Aligned_cols=205 Identities=12% Similarity=0.174 Sum_probs=167.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~~~~---v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~-- 69 (369)
T PRK11000 3 SVTLRNVTKAYGDVV---I---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMND-- 69 (369)
T ss_pred EEEEEEEEEEeCCeE---E---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC--
Confidence 589999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+..+ |.+|+. ++.... .....+.++++.++++.++|.+
T Consensus 70 ----~~~~~~~i~~v~Q~~~l~~~~tv~eni~-----------~~~~~~-~~~~~~~~~~~~~~l~~lgL~~-------- 125 (369)
T PRK11000 70 ----VPPAERGVGMVFQSYALYPHLSVAENMS-----------FGLKLA-GAKKEEINQRVNQVAEVLQLAH-------- 125 (369)
T ss_pred ----CCHhHCCEEEEeCCcccCCCCCHHHHHH-----------hHHhhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 111234567888776665543 555544 332211 1223455678899999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|+||| ++
T Consensus 126 ---------~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~ 196 (369)
T PRK11000 126 ---------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (369)
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 56899999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+..+||++++ |++|++++.|++++++..|.+.++..++..
T Consensus 197 ~~~~~d~i~v-l~~G~i~~~g~~~~i~~~p~~~~~~~~~g~ 236 (369)
T PRK11000 197 AMTLADKIVV-LDAGRVAQVGKPLELYHYPANRFVAGFIGS 236 (369)
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhcCC
Confidence 8899999975 999999999999999999887777666653
No 60
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.3e-42 Score=352.79 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=177.0
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
...+++.++++.+++.... ....|+++||+|+|++... .+ |+|+||+|++||+++|+|+||||||||+++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~-~i---l~~inl~i~~G~~v~IvG~sGsGKSTLl~l 377 (571)
T TIGR02203 302 AAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDR-PA---LDSISLVIEPGETVALVGRSGSGKSTLVNL 377 (571)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCC-cc---ccCeeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 3345677777655443211 1234999999999975322 14 677999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+++ |++|+|+++|.++. . +...+.+...++++|++.++..++++|+.++..
T Consensus 378 L~gl~~-----~~~G~I~i~g~~i~------~---------~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------ 431 (571)
T TIGR02203 378 IPRFYE-----PDSGQILLDGHDLA------D---------YTLASLRRQVALVSQDVVLFNDTIANNIAYGRT------ 431 (571)
T ss_pred HHhccC-----CCCCeEEECCEeHH------h---------cCHHHHHhhceEEccCcccccccHHHHHhcCCC------
Confidence 999999 99999999999986 1 122223333444555555566666677665421
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
++..++++.++++.+++++.+.++|+|++|.|+|.| ..||||||||++||||+ |||||+||.
T Consensus 432 ~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g------~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~ 505 (571)
T TIGR02203 432 EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENG------VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505 (571)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCC------CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 123357788999999999999999999999999985 38999999999999999 999999984
Q ss_pred ------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++++.
T Consensus 506 ~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii-~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 506 RLVQAALERLMQGRTTLVIAHRLSTIEKADRIV-VMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEE-EEeCCEEEeeCCHHHHHHc
Confidence 799999999 45667799996 5999999999999998765
No 61
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.3e-41 Score=376.94 Aligned_cols=230 Identities=11% Similarity=0.159 Sum_probs=179.1
Q ss_pred hhhHHHHHHhhhhhhhh--cc----------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCH
Q 019066 48 RRDAVFREVLQSYDQLR--TR----------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK 115 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~--~~----------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGK 115 (346)
...++++++++.+++.. +. ....|+|+||+|+|++.....+ |+|+||+|++|+++||||||||||
T Consensus 1131 ~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v---L~~lsl~i~~G~~vAIVG~SGsGK 1207 (1466)
T PTZ00265 1131 LSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI---YKDLTFSCDSKKTTAIVGETGSGK 1207 (1466)
T ss_pred HHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc---ccCeeEEEcCCCEEEEECCCCCCH
Confidence 33566788887654321 10 1124999999999975321224 666999999999999999999999
Q ss_pred HHHHHHHhhhccCC-------------------------------------------------CCCCCCceEEECceeCC
Q 019066 116 SSLVNRISKVFEND-------------------------------------------------KFASERAQVTYNSSVGD 146 (346)
Q Consensus 116 STLl~~L~gl~~~~-------------------------------------------------~~~p~~G~I~~~g~~i~ 146 (346)
|||+++|.|+|++. ...|++|+|++||.++.
T Consensus 1208 STl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~ 1287 (1466)
T PTZ00265 1208 STVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDIC 1287 (1466)
T ss_pred HHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHH
Confidence 99999999999920 00016999999999987
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.+...+.|..+++|+|++.+|..++++||.++.. ...+++++++++.+++++++..+|
T Consensus 1288 ---------------~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-------~at~eeI~~A~k~A~l~~fI~~LP 1345 (1466)
T PTZ00265 1288 ---------------DYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-------DATREDVKRACKFAAIDEFIESLP 1345 (1466)
T ss_pred ---------------hCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-------CCCHHHHHHHHHHcCCHHHHHhCc
Confidence 2333444555566666666777778888877632 224567999999999999999999
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~ 279 (346)
+||+|.|||+|. .||||||||++||||| |||||+||. ++|+|+||| -
T Consensus 1346 ~GydT~VGe~G~------~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1346 NKYDTNVGPYGK------SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred cccCCccCCCCC------cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH
Confidence 999999999964 8999999999999999 999999873 689999999 3
Q ss_pred hhhccccEEEEEecC----CeEe-ecCCccccccC
Q 019066 280 DLLSLTDRARIRTYL----GELL-GIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~----G~iv-~~g~~~~l~~~ 309 (346)
...+.||+|++ |++ |+++ +.|+|++++..
T Consensus 1420 sti~~aD~Ivv-l~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1420 ASIKRSDKIVV-FNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred HHHHhCCEEEE-EeCCCCCCCEEEEecCHHHHHhc
Confidence 44556999964 999 9965 89999999864
No 62
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-41 Score=307.55 Aligned_cols=202 Identities=16% Similarity=0.191 Sum_probs=155.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~ 69 (235)
T cd03261 1 IELRGLTKSFGGRT---V---LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISGLSE 69 (235)
T ss_pred CeEEEEEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccCh
Confidence 57899999997532 4 777999999999999999999999999999999999 999999999998751100
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+..+ +.+|+ .++.............+++.++++.+++.+
T Consensus 70 -~~~~~~~~~i~~v~q~~~~~~~~tv~~~l-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 128 (235)
T cd03261 70 -AELYRLRRRMGMLFQSGALFDSLTVFENV-----------AFPLREHTRLSEEEIREIVLEKLEAVGLRG--------- 128 (235)
T ss_pred -hhHHHHhcceEEEccCcccCCCCcHHHHH-----------HHHHhhccCCCHHHHHHHHHHHHHHcCCch---------
Confidence 00011234567777776555433 44444 332211111123445677889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |+|||+||| +.+
T Consensus 129 --------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~ 200 (235)
T cd03261 129 --------AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA 200 (235)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH
Confidence 45888999999999999999999 999999983 689999999 568
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
..+||++++ |++|++++.|++++++.. .+++
T Consensus 201 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~-~~~~ 231 (235)
T cd03261 201 FAIADRIAV-LYDGKIVAEGTPEELRAS-DDPL 231 (235)
T ss_pred HHhcCEEEE-EECCeEEEecCHHHHcCC-CChh
Confidence 889999965 999999999999888653 3344
No 63
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.2e-40 Score=324.24 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=157.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++......+...+.++.++|++|+...+
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 777999999999999999999999999999999999 999999999999862111111112245677777776666
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
..+ |.+|+.+ +.... .....+..+++.++++.++|+. +.++++.+|||||
T Consensus 84 ~~~TV~eNi~~-----------~~~~~-~~~~~~~~~~~~~~l~~vgL~~-----------------~~~~~p~~LSGGq 134 (363)
T TIGR01186 84 PHMTILQNTSL-----------GPELL-GWPEQERKEKALELLKLVGLEE-----------------YEHRYPDELSGGM 134 (363)
T ss_pred CCCCHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHhcCCch-----------------hhhCChhhCCHHH
Confidence 543 5555543 32211 1234556788999999999987 5699999999999
Q ss_pred HHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCC
Q 019066 251 QYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 251 rQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
|||++||||| ||||++||+ ++|+|+||| +++.++||||++ |++|++++.|+
T Consensus 135 ~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~v-l~~G~iv~~g~ 213 (363)
T TIGR01186 135 QQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVI-MKAGEIVQVGT 213 (363)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EeCCEEEeeCC
Confidence 9999999999 999999984 789999999 578899999975 99999999999
Q ss_pred ccccccCCCCCChHHHHHH
Q 019066 303 AKQIFDIPESSDPENELII 321 (346)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~~ 321 (346)
+++++.+|.+++++.++..
T Consensus 214 ~~ei~~~p~~~~~~~~~~~ 232 (363)
T TIGR01186 214 PDEILRNPANEYVEEFIGK 232 (363)
T ss_pred HHHHHhCcccHHHHHHhhc
Confidence 9999999988887766543
No 64
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.9e-41 Score=345.18 Aligned_cols=201 Identities=14% Similarity=0.186 Sum_probs=165.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|+++.. + |+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++.
T Consensus 334 ~I~~~~vsf~y~~~~~--i---L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~i~--- 400 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQ--G---VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTDIR--- 400 (588)
T ss_pred eEEEEEEEEEeCCCCc--e---ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEhh---
Confidence 5999999999975433 3 777999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. +...+.+...++++|++.++..++++|+.++.. ...++++.++++.+++.+++..+|+|+
T Consensus 401 ---~---------~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-------~~~d~~i~~al~~~~l~~~i~~lp~gl 461 (588)
T PRK13657 401 ---T---------VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-------DATDEEMRAAAERAQAHDFIERKPDGY 461 (588)
T ss_pred ---h---------CCHHHHHhheEEEecCcccccccHHHHHhcCCC-------CCCHHHHHHHHHHhCHHHHHHhCcccc
Confidence 1 122223333444555555566667777765421 122466888999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhcc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 284 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~ 284 (346)
+|.+++.| ..||||||||++||||| |||||+||+ ++|+|+||| ....+.
T Consensus 462 dt~i~~~g------~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~ 535 (588)
T PRK13657 462 DTVVGERG------RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN 535 (588)
T ss_pred cchhcCCC------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHh
Confidence 99999984 48999999999999999 999999984 799999999 455567
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||+|+ +|++|++++.|++++++..
T Consensus 536 ~D~ii-~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 536 ADRIL-VFDNGRVVESGSFDELVAR 559 (588)
T ss_pred CCEEE-EEECCEEEEeCCHHHHHHC
Confidence 99996 5999999999999998754
No 65
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-40 Score=320.93 Aligned_cols=212 Identities=15% Similarity=0.195 Sum_probs=164.3
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
||+++||+++|+.+. ...+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 mi~i~~l~~~y~~~~~~~~i---l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA---LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTAL 72 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCcC
Confidence 589999999997311 1225 677999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+..+ +.+|+.+ +.... .......++++.++++.++|.+
T Consensus 73 ~~-~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~-----------~~~~~-~~~~~~~~~~~~~~l~~~gL~~------- 132 (343)
T PRK11153 73 SE-KELRKARRQIGMIFQHFNLLSSRTVFDNVAL-----------PLELA-GTPKAEIKARVTELLELVGLSD------- 132 (343)
T ss_pred CH-HHHHHHhcCEEEEeCCCccCCCCcHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 10 11111244677888776655433 5555443 22111 1123445678889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. |+|+|++|| +
T Consensus 133 ----------~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 133 ----------KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 46889999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+.++||++++ |++|++++.|++++++..+.++.++.++.
T Consensus 203 ~i~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK11153 203 VVKRICDRVAV-IDAGRLVEQGTVSEVFSHPKHPLTREFIQ 242 (343)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 68889999975 99999999999999988876665555544
No 66
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.4e-41 Score=353.62 Aligned_cols=225 Identities=13% Similarity=0.112 Sum_probs=178.7
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
...+|+.++++.+++.... ....|+++||+|+|++... .+ |+|+||+|++||.++|+|+||||||||++
T Consensus 426 ~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~-~i---l~~i~l~i~~G~~vaivG~sGsGKSTL~~ 501 (694)
T TIGR01846 426 IALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-EV---LSNLNLDIKPGEFIGIVGPSGSGKSTLTK 501 (694)
T ss_pred HHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCc-cc---cccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 3356677887665443211 1235999999999965432 14 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|++||.++. + +...+.+...++|+|++.++..++++|+.++..
T Consensus 502 ll~g~~~-----p~~G~I~idg~~i~------~---------~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~----- 556 (694)
T TIGR01846 502 LLQRLYT-----PQHGQVLVDGVDLA------I---------ADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP----- 556 (694)
T ss_pred HHhcCCC-----CCCceEEECCEehh------h---------CCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC-----
Confidence 9999999 99999999999986 1 222333444455556666666777788775421
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...++++.++++.+++.+.+.++|+||+|.|++.| .+||||||||++||||| ||||++||.
T Consensus 557 --~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g------~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 557 --GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG------ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred --CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC------CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 22356788899999999999999999999999984 48999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++++..
T Consensus 629 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii-~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 629 EALIMRNMREICRGRTVIIIAHRLSTVRACDRII-VLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEE-EEeCCEEEEeCCHHHHHHcC
Confidence 799999999 33445599996 49999999999999998753
No 67
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-39 Score=300.98 Aligned_cols=203 Identities=16% Similarity=0.243 Sum_probs=158.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 68 (239)
T cd03296 2 SIEVRNVSKRFGDFV---A---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATD-- 68 (239)
T ss_pred EEEEEeEEEEECCEE---e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 489999999997632 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccC---CChHHHHHHHHHHHHHcCCCcccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
....++.++|++|++..+..+ +.+|+ .++...... .......+++.++++.+++.+
T Consensus 69 ----~~~~~~~i~~v~q~~~~~~~~tv~e~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 128 (239)
T cd03296 69 ----VPVQERNVGFVFQHYALFRHMTVFDNV-----------AFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW----- 128 (239)
T ss_pred ----CCccccceEEEecCCcccCCCCHHHHH-----------hhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----
Confidence 111234567777776544332 44444 332211100 012334567888999999976
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |+|+|++||
T Consensus 129 ------------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 129 ------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred ------------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45888999999999999999999 999999983 689999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+.+..+||++++ |++|++++.|++++++..+.++++..+
T Consensus 197 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 236 (239)
T cd03296 197 QEEALEVADRVVV-MNKGRIEQVGTPDEVYDHPASPFVYSF 236 (239)
T ss_pred HHHHHHhCCEEEE-EECCeEEEecCHHHHhcCCCcHHHHHH
Confidence 567889999975 999999999999998876665554443
No 68
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.8e-40 Score=303.62 Aligned_cols=212 Identities=21% Similarity=0.272 Sum_probs=161.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-----CceEEECcee
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 144 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-----~G~I~~~g~~ 144 (346)
+|+++||+++|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 1 AIEIENLNLFYGEKE---A---LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred CEEEEEEEEEECCee---e---ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEE
Confidence 489999999997532 4 677999999999999999999999999999999999 87 9999999998
Q ss_pred CCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
+... .......++.++|++|+...+...+.+|+.+ +.............+++.++++.+++.+.+.
T Consensus 70 ~~~~--~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~- 135 (247)
T TIGR00972 70 IYDK--KIDVVELRRRVGMVFQKPNPFPMSIYDNIAY-----------GPRLHGIKDKKELDEIVEESLKKAALWDEVK- 135 (247)
T ss_pred cccc--ccchHHHHhheEEEecCcccCCCCHHHHHHh-----------HHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-
Confidence 7511 0011112446778888765544225555433 2211111123445577889999999973210
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-- 278 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++||
T Consensus 136 ------------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 136 ------------DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred ------------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence 045888999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+.+..+||++++ |++|++++.|++++++..+.++.++.++
T Consensus 204 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 243 (247)
T TIGR00972 204 QQAARISDRTAF-FYDGELVEYGPTEQIFTNPKEKRTEDYI 243 (247)
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHHh
Confidence 567889999965 9999999999999998877766554443
No 69
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-40 Score=371.25 Aligned_cols=227 Identities=11% Similarity=0.120 Sum_probs=177.6
Q ss_pred hhhHHHHHHhhhhhhhhc------c-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHH
Q 019066 48 RRDAVFREVLQSYDQLRT------R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 116 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~------~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKS 116 (346)
.+.+|+.++++.+++.+. + ....|+|+||+|+|+++.. .+ |+|+||+|++||.+||||+||||||
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~V---L~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP-PV---LHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC-ce---ecceeEEEcCCCEEEEECCCCCCHH
Confidence 445677777766554321 0 1235999999999965431 14 7779999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh
Q 019066 117 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 196 (346)
Q Consensus 117 TLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~ 196 (346)
||+++|.|+++ |++|+|++||.|+. . +...+.|...++|+|++.+|..++++|+..+.
T Consensus 1280 TLl~lL~rl~~-----p~~G~I~IDG~dI~------~---------i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-- 1337 (1622)
T PLN03130 1280 SMLNALFRIVE-----LERGRILIDGCDIS------K---------FGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-- 1337 (1622)
T ss_pred HHHHHHhCcCC-----CCCceEEECCEecc------c---------CCHHHHHhccEEECCCCccccccHHHHhCcCC--
Confidence 99999999999 99999999999987 2 22223333334444444445555666654321
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCC
Q 019066 197 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 267 (346)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 267 (346)
...++++.++++.+++.+++..+|+||+|.|+|+|. +||||||||++||||| |||||+|
T Consensus 1338 ------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~------nLSgGQrQrlaLARALLr~p~ILILDEATSaL 1405 (1622)
T PLN03130 1338 ------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE------NFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405 (1622)
T ss_pred ------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC------CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 123567899999999999999999999999999954 9999999999999999 9999999
Q ss_pred CC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 268 RD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 268 d~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
|. ++|+|+|+| +.+.. ||||+| |++|+|++.|+|+++++++...+
T Consensus 1406 D~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlV-Ld~G~IvE~Gt~~eLl~~~~g~f 1467 (1622)
T PLN03130 1406 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILV-LDAGRVVEFDTPENLLSNEGSAF 1467 (1622)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEE-EECCEEEEeCCHHHHHhCCCCHH
Confidence 83 899999999 44555 999965 99999999999999998754333
No 70
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=321.33 Aligned_cols=214 Identities=14% Similarity=0.181 Sum_probs=166.6
Q ss_pred cEEEeeeEEEeCCCCc---------------------eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccC
Q 019066 70 LTDAKNKILSYTPGAW---------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN 128 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~---------------------~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~ 128 (346)
+|+++||++.|+.... ..+ |+++||+|++||+++|+||||||||||+|+|+|+++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~- 79 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLG---VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE- 79 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEE---EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-
Confidence 5788888888865321 114 677999999999999999999999999999999999
Q ss_pred CCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHH
Q 019066 129 DKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN 207 (346)
Q Consensus 129 ~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~ 207 (346)
|++|+|+++|+++......+.....++.++|++|+...+..+ +.+|+.+ +.... .......++
T Consensus 80 ----p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~-----------~~~~~-~~~~~~~~~ 143 (400)
T PRK10070 80 ----PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF-----------GMELA-GINAEERRE 143 (400)
T ss_pred ----CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH-----------HHHhc-CCCHHHHHH
Confidence 999999999998752111110112234677888876655443 5555443 32211 112344567
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 269 (346)
++.++++.++|.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 144 ~~~e~L~~~gL~~-----------------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 144 KALDALRQVGLEN-----------------YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred HHHHHHHHcCCCh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 8889999999987 56899999999999999999999 999999984
Q ss_pred --------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 270 --------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 270 --------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
++|+|+||| +.+.++||++++ |++|++++.|++++++..|.+++++.++..
T Consensus 207 L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v-L~~G~i~~~g~~~~l~~~~~~~~v~~~~~~ 267 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLDEAMRIGDRIAI-MQNGEVVQVGTPDEILNNPANDYVRTFFRG 267 (400)
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHhCCEEEE-EECCEEEecCCHHHHHhCcccHHHHHHHhc
Confidence 789999999 578889999975 999999999999999988887777777653
No 71
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.1e-40 Score=371.40 Aligned_cols=225 Identities=12% Similarity=0.092 Sum_probs=177.0
Q ss_pred hhhHHHHHHhhhhhhhhc------c-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHH
Q 019066 48 RRDAVFREVLQSYDQLRT------R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 116 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~------~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKS 116 (346)
.+.+|+.++++.+++... + ....|+++||+|+|+++.. .+ |+|+||+|++||.+||||+||||||
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~-~v---L~~isl~I~~GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP-PV---LHGLSFFVSPSEKVGVVGRTGAGKS 1276 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC-cc---cccceEEEcCCCEEEEECCCCCCHH
Confidence 345677888766554321 0 1135999999999965421 14 7779999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCceEEECceeCCCccccccccc--CCCCccceeecccccccchhhchHhhHHHHHhhhhcch
Q 019066 117 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTI--PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 194 (346)
Q Consensus 117 TLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~--~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~ 194 (346)
||+++|.|+++ |++|+|.+||.|+. .... -|+++++++|++..| ..++++|+..+.
T Consensus 1277 TL~~lL~rl~~-----p~~G~I~IdG~di~------~i~~~~lR~~i~iVpQdp~LF-----------~gTIr~NL~~~~ 1334 (1495)
T PLN03232 1277 SMLNALFRIVE-----LEKGRIMIDDCDVA------KFGLTDLRRVLSIIPQSPVLF-----------SGTVRFNIDPFS 1334 (1495)
T ss_pred HHHHHHhCCCc-----CCCceEEECCEEhh------hCCHHHHHhhcEEECCCCeee-----------CccHHHHcCCCC
Confidence 99999999999 99999999999986 2111 134455555555544 445555654321
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------Ccccc
Q 019066 195 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 265 (346)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts 265 (346)
...++++.++++.+++.+++..+|+|++|.|+|+|. +||||||||++||||| |||||
T Consensus 1335 --------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~------~LSgGQrQrlaLARALLr~~~ILILDEATS 1400 (1495)
T PLN03232 1335 --------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE------NFSVGQRQLLSLARALLRRSKILVLDEATA 1400 (1495)
T ss_pred --------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCC------CCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 123467889999999999999999999999999954 8999999999999999 99999
Q ss_pred CCCC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 266 SFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 266 ~Ld~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
+||. ++|+|+||| +.+.. ||||+| |++|+|++.|+|+++++++...+
T Consensus 1401 aLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlV-L~~G~ivE~Gt~~eLl~~~~~~f 1464 (1495)
T PLN03232 1401 SVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILV-LSSGQVLEYDSPQELLSRDTSAF 1464 (1495)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEE-EECCEEEEECCHHHHHhCCCCHH
Confidence 9983 899999999 44555 999965 99999999999999998754333
No 72
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=8.5e-40 Score=303.23 Aligned_cols=209 Identities=20% Similarity=0.232 Sum_probs=161.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 71 (250)
T PRK11264 3 AIEVKNLVKKFHGQT---V---LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITIDTAR 71 (250)
T ss_pred cEEEeceEEEECCee---e---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccc
Confidence 699999999997532 4 677999999999999999999999999999999999 99999999999874210
Q ss_pred ccc----ccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 150 FLQ----EYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 150 ~~~----~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
... .....++.++|++|+...+... +.+|+.+.. ............+++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-----------~~~~~~~~~~~~~~~~~~l~~~gl~~---- 136 (250)
T PRK11264 72 SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP-----------VIVKGEPKEEATARARELLAKVGLAG---- 136 (250)
T ss_pred cccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHH-----------HHhcCCCHHHHHHHHHHHHHHcCCcc----
Confidence 000 0011234567777776555433 555543321 10111123345567889999999986
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 137 -------------~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 137 -------------KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred -------------hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45888999999999999999999 999999984 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+.+..+||++++ |++|++++.|++++++..+.+++++.+
T Consensus 204 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 243 (250)
T PRK11264 204 MSFARDVADRAIF-MDQGRIVEQGPAKALFADPQQPRTRQF 243 (250)
T ss_pred HHHHHHhcCEEEE-EECCEEEEeCCHHHHhcCCCCHHHHHH
Confidence 567889999965 999999999999999887766665544
No 73
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.9e-40 Score=312.02 Aligned_cols=196 Identities=13% Similarity=0.117 Sum_probs=160.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+|+|++. .+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 5 ~~~i~i~~l~k~~~~~---~~---l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~ 73 (306)
T PRK13537 5 VAPIDFRNVEKRYGDK---LV---VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPS 73 (306)
T ss_pred CceEEEEeEEEEECCe---EE---EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEeccc
Confidence 4579999999999753 25 666999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. ....++.++|++|+...+..+ +.+|+.++... . ..+..+..+++.++++.+++.+
T Consensus 74 ~-----~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-----------~-~~~~~~~~~~~~~~l~~~~l~~------ 130 (306)
T PRK13537 74 R-----ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY-----------F-GLSAAAARALVPPLLEFAKLEN------ 130 (306)
T ss_pred c-----hHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH-----------c-CCCHHHHHHHHHHHHHHcCCch------
Confidence 1 011245678888887666544 66665543311 1 1123445667889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 131 -----------~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 131 -----------KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 46888999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++.++||||++ |++|++++.|+++++...
T Consensus 200 e~~~~~d~i~i-l~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 200 EAERLCDRLCV-IEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 78899999975 999999999999988654
No 74
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8e-40 Score=301.80 Aligned_cols=208 Identities=18% Similarity=0.231 Sum_probs=161.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~---i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 69 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ---V---LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVNDPK 69 (240)
T ss_pred CEEEEeEEEEECCeE---E---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCC
Confidence 489999999997532 4 777999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
......++.++|++|+...+..+ +.+|+.+ +.............+++.++++.+++.+
T Consensus 70 --~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------- 128 (240)
T PRK09493 70 --VDERLIRQEAGMVFQQFYLFPHLTALENVMF-----------GPLRVRGASKEEAEKQARELLAKVGLAE-------- 128 (240)
T ss_pred --hhHHHHhhceEEEecccccCCCCcHHHHHHh-----------HHHHhcCCCHHHHHHHHHHHHHHcCChH--------
Confidence 00011234567888776554432 5555433 2110011123445567889999999986
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
.+++++.+||||||||++||||| ||||++||. ++|+|++|| +.+
T Consensus 129 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 199 (240)
T PRK09493 129 ---------RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199 (240)
T ss_pred ---------HHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+||++++ |++|++++.|+++++...+.++.+..++
T Consensus 200 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 236 (240)
T PRK09493 200 EKVASRLIF-IDKGRIAEDGDPQVLIKNPPSQRLQEFL 236 (240)
T ss_pred HHhCCEEEE-EECCEEEeeCCHHHHhcCCchHHHHHHh
Confidence 889999975 9999999999999888776665555443
No 75
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=303.68 Aligned_cols=220 Identities=17% Similarity=0.190 Sum_probs=164.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|+++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 5 EAIIETENLNLFYTDFK---A---LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred CceEEEeeeEEEeCCce---e---ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 55899999999997532 4 67799999999999999999999999999999999811111258999999988741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . .....++.++|++|+...+...+.+|+.+ +............++++.++++.+++.+.+.
T Consensus 79 ~~-~-~~~~~~~~i~~v~q~~~~~~~tv~eni~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 141 (254)
T PRK14273 79 NN-F-DILELRRKIGMVFQTPNPFLMSIYDNISY-----------GPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---- 141 (254)
T ss_pred cc-c-cHHHHhhceEEEeeccccccCcHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHhCCchhhH----
Confidence 10 0 11112446788888765543235555443 2211111122344577888999998853210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 142 ---------~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~ 212 (254)
T PRK14273 142 ---------DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQA 212 (254)
T ss_pred ---------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|++++.|++++++.+|.+++++.++.
T Consensus 213 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 250 (254)
T PRK14273 213 GRISDRTAF-FLNGCIEEESSTDELFFNPKNTKTEEYIS 250 (254)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHhhc
Confidence 889999975 99999999999999999988888766543
No 76
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.6e-40 Score=339.20 Aligned_cols=192 Identities=15% Similarity=0.180 Sum_probs=157.2
Q ss_pred hhHHHHHHhhhhhhhhcc----------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR----------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 118 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~----------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTL 118 (346)
..+|+.++++.+++..+. ....|+++||+|+|++.+. + |+|+||+|++||++||+||||||||||
T Consensus 303 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~--v---L~~isl~i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 303 AAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPP--V---LDGVSLDLPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred HHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCc--e---eecceEEEcCCCEEEEECCCCCCHHHH
Confidence 345677777655432110 1124999999999976543 3 777999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 119 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 119 l~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
+++|+|+++ |++|+|.+||.++. .+ ..+.+...++|+|++.++..++++||.++..
T Consensus 378 l~lL~g~~~-----p~~G~I~i~g~~i~---------------~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~--- 433 (529)
T TIGR02868 378 LMLLTGLLD-----PLQGEVTLDGVSVS---------------SL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP--- 433 (529)
T ss_pred HHHHhcCCC-----CCCcEEEECCEEhh---------------hH-HHHHHhheEEEccCcccccccHHHHHhccCC---
Confidence 999999999 99999999999987 23 4445555666677777777788888876532
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
+..++++.++++.+++++++..+|+||+|.|||+|. .||||||||++||||| |||||+||.
T Consensus 434 ----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~------~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~ 503 (529)
T TIGR02868 434 ----DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGA------RLSGGERQRLALARALLADAPILLLDEPTEHLDA 503 (529)
T ss_pred ----CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccC------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 234567889999999999999999999999999965 8999999999999999 999999984
Q ss_pred ---------------CceEEEEech
Q 019066 270 ---------------DKPVVVVTHG 279 (346)
Q Consensus 270 ---------------g~tviiiTH~ 279 (346)
++|+|+|||+
T Consensus 504 ~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 504 GTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecC
Confidence 7999999994
No 77
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=308.15 Aligned_cols=201 Identities=14% Similarity=0.201 Sum_probs=156.2
Q ss_pred EEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||++.|++... ..+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 74 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKA---LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDITDK 74 (287)
T ss_pred EEEEEEEEECCCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEECCCc
Confidence 899999999975310 124 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC--ccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ 226 (346)
. ......++.++|++|++.. .++..++.+|+.++.... .....+..+++.++++.+||. +
T Consensus 75 ~--~~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~------ 136 (287)
T PRK13637 75 K--VKLSDIRKKVGLVFQYPEY---------QLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYED------ 136 (287)
T ss_pred C--ccHHHHhhceEEEecCchh---------ccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchh------
Confidence 0 0001113456777776421 122235556665543322 223455667889999999997 3
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 137 -----------~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 205 (287)
T PRK13637 137 -----------YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM 205 (287)
T ss_pred -----------hccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46889999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+..+||||++ |++|++++.|++++++..
T Consensus 206 ~~~~~~~drv~~-l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 206 EDVAKLADRIIV-MNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 567789999975 999999999999988764
No 78
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=305.86 Aligned_cols=196 Identities=15% Similarity=0.232 Sum_probs=152.6
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~~--~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 72 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTK--A---LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVNAE 72 (274)
T ss_pred ceEEEEEEEEEeCCCCe--e---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 37999999999964333 4 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. . ...++.++|++|++.. .++..++.+|+.++.... .......++++.++++.+++.+
T Consensus 73 ~---~-~~~~~~i~~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~-------- 130 (274)
T PRK13647 73 N---E-KWVRSKVGLVFQDPDD---------QVFSSTVWDDVAFGPVNM-GLDKDEVERRVEEALKAVRMWD-------- 130 (274)
T ss_pred C---H-HHHHhhEEEEecChhh---------hhccCcHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH--------
Confidence 0 0 1112346677766421 112224555555443211 1223445677889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.+
T Consensus 131 ---------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~ 201 (274)
T PRK13647 131 ---------FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA 201 (274)
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 56889999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCcccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
.++|||+++ |++|++++.|+++++
T Consensus 202 ~~~~d~i~~-l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 202 AEWADQVIV-LKEGRVLAEGDKSLL 225 (274)
T ss_pred HHhCCEEEE-EECCEEEEECCHHHh
Confidence 789999975 999999999998643
No 79
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=311.98 Aligned_cols=208 Identities=18% Similarity=0.217 Sum_probs=158.7
Q ss_pred CCcEEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.++|+++||++.|++.. ...+ |+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~ 90 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVA---LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYI 90 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEc
Confidence 46899999999997532 1124 777999999999999999999999999999999999 9999999999987
Q ss_pred CCccc----------c--cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHH
Q 019066 146 DGTYF----------L--QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKA 213 (346)
Q Consensus 146 ~~~~~----------~--~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l 213 (346)
..... . ......++.++|++|++.. .++..++.+|+.++.... ..+.....+++.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~---------~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l 160 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEY---------QLFKDTIEKDIMFGPVAL-GVKKSEAKKLAKFYL 160 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchh---------ccccchHHHHHHhhHHhc-CCCHHHHHHHHHHHH
Confidence 42100 0 0001113345666665410 233346666666654321 123445567888999
Q ss_pred HHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------
Q 019066 214 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------- 269 (346)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------------- 269 (346)
+.+++... ..++.+.+||||||||++||||| ||||++||.
T Consensus 161 ~~~gL~~~----------------~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~ 224 (320)
T PRK13631 161 NKMGLDDS----------------YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA 224 (320)
T ss_pred HHcCCChh----------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 99999631 45888999999999999999999 999999984
Q ss_pred -CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|.|||+||| +.+..+|||+++ |++|++++.|++++++..+
T Consensus 225 ~g~TiiivtHd~~~~~~~adri~v-l~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 225 NNKTVFVITHTMEHVLEVADEVIV-MDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred CCCEEEEEecCHHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 789999999 467789999975 9999999999999887654
No 80
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-39 Score=307.51 Aligned_cols=205 Identities=18% Similarity=0.204 Sum_probs=156.9
Q ss_pred cEEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
||+++||+++|+.+.. ..+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRA---LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 5899999999974321 124 677999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
..........++.++|++|++.. .++..++.+|+.++....+ .+..+.++++.++++.++|.+.
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~------ 136 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPES---------QLFEETVLKDVAFGPQNFG-IPKEKAEKIAAEKLEMVGLADE------ 136 (288)
T ss_pred ccccccHHHHHhhEEEEecCcch---------hcccchHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCChh------
Confidence 10000011123355666665410 2223355666665543221 2345566788999999999632
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
+.++.+.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 137 ----------~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~ 206 (288)
T PRK13643 137 ----------FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206 (288)
T ss_pred ----------hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 35888999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+||||++ |++|++++.|++++++..
T Consensus 207 ~~~~~dri~~-l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 207 VADYADYVYL-LEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHcC
Confidence 7889999965 999999999999998764
No 81
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8e-40 Score=280.41 Aligned_cols=195 Identities=16% Similarity=0.163 Sum_probs=160.1
Q ss_pred CcEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+|+++++++..+... .+++ |++|+|.|++||.++||||||||||||+-+++|+.+ |++|+|.+.|+++..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~I---L~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~~ 76 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSI---LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLHK 76 (228)
T ss_pred ceeehhhhhhhhcCCCcceeE---eecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchhh
Confidence 3799999999987653 2456 566999999999999999999999999999999999 999999999999875
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
...-....++.++++|+||.+.+.+.+ +..+|+..++...+. ........+.++|+.+||..
T Consensus 77 ldEd~rA~~R~~~vGfVFQSF~Lip~l----------tAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~------- 138 (228)
T COG4181 77 LDEDARAALRARHVGFVFQSFHLIPNL----------TALENVALPLELRGE-SSADSRAGAKALLEAVGLGK------- 138 (228)
T ss_pred cCHHHHHHhhccceeEEEEeeeccccc----------hhhhhccchhhhcCC-ccccHHHHHHHHHHHhCccc-------
Confidence 544444556677888988887766444 445666666554332 23445677899999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~ 280 (346)
.++.||.+|||||||||+||||+ ||||-+||. |.|+++||| ..
T Consensus 139 ----------Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 139 ----------RLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred ----------ccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 56999999999999999999999 999999984 999999999 45
Q ss_pred hhccccEEEEEecCCeEeec
Q 019066 281 LLSLTDRARIRTYLGELLGI 300 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~ 300 (346)
++.-|+|++ .|.+|+|+++
T Consensus 209 LA~Rc~R~~-r~~~G~l~~~ 227 (228)
T COG4181 209 LAARCDRQL-RLRSGRLVED 227 (228)
T ss_pred HHHhhhhee-eeecceeccC
Confidence 555699994 7999999864
No 82
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-39 Score=298.25 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=158.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~ 71 (241)
T PRK14250 3 EIEFKEVSYSSFGKE---I---LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIKTID 71 (241)
T ss_pred eEEEEeEEEEeCCee---e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhcC
Confidence 589999999997533 3 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+.. ++..++.+|+.++.... ....+++.++++.+++.+.
T Consensus 72 ----~~~~~~~i~~~~q~~~-----------~~~~tv~e~l~~~~~~~-----~~~~~~~~~~l~~~~l~~~-------- 123 (241)
T PRK14250 72 ----VIDLRRKIGMVFQQPH-----------LFEGTVKDNIEYGPMLK-----GEKNVDVEYYLSIVGLNKE-------- 123 (241)
T ss_pred ----hHHhhhcEEEEecCch-----------hchhhHHHHHhcchhhc-----CcHHHHHHHHHHHcCCCHH--------
Confidence 0011234556666543 33345666665543211 1123567889999999632
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 124 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~ 195 (241)
T PRK14250 124 --------YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQA 195 (241)
T ss_pred --------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH
Confidence 35788999999999999999999 999999883 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++|++++.|++++++..+.+++++.++.
T Consensus 196 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (241)
T PRK14250 196 KRIGDYTAF-LNKGILVEYAKTYDFFTNPQNEVTKLFIQ 233 (241)
T ss_pred HHhCCEEEE-EeCCEEEEeCCHHHHhcCCCcHHHHHHHh
Confidence 889999964 99999999999999988777666555443
No 83
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-39 Score=305.98 Aligned_cols=205 Identities=15% Similarity=0.169 Sum_probs=157.2
Q ss_pred EEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|++.. ...+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA---LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVITAG 74 (290)
T ss_pred EEEEEEEEEECCCCcccccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 89999999996421 0124 777999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.........++.++|++|++.. .++..++.+|+.++.... .......++++.++++.++|.+.
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------- 137 (290)
T PRK13634 75 KKNKKLKPLRKKVGIVFQFPEH---------QLFEETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEE------- 137 (290)
T ss_pred cccchHHHHHhhEEEEeeCchh---------hhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChh-------
Confidence 0000011113345666665421 223346667776654322 12344556788999999999742
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 138 ---------~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 138 ---------LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 35888999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+..+||||++ |++|++++.|++++++..+
T Consensus 209 ~~~~~drv~~-l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 209 AARYADQIVV-MHKGTVFLQGTPREIFADP 237 (290)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHhcCH
Confidence 8889999965 9999999999999887654
No 84
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.5e-40 Score=340.67 Aligned_cols=224 Identities=13% Similarity=0.117 Sum_probs=173.3
Q ss_pred hhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
...|+.++++.+++.... ....|+++|++|+|+..+. .+ |+++||+|++|++++|+||||||||||+++|
T Consensus 286 a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~-~~---l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll 361 (569)
T PRK10789 286 AYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDH-PA---LENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361 (569)
T ss_pred HHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCC-cc---ccCeeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 345677777655432111 1235999999999975421 14 6679999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.++|+++.. +...+.+...++++|++.++..++++|+.++..
T Consensus 362 ~g~~~-----p~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------- 414 (569)
T PRK10789 362 QRHFD-----VSEGDIRFHDIPLTK---------------LQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP------- 414 (569)
T ss_pred hcccC-----CCCCEEEECCEEHhh---------------CCHHHHHhheEEEccCCeeccccHHHHHhcCCC-------
Confidence 99999 999999999998751 111122223334444445555566777765421
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
...++++.++++.+++.+++..+|+|++|.+|+.+ ..||||||||++||||| ||||++||.
T Consensus 415 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g------~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~ 488 (569)
T PRK10789 415 DATQQEIEHVARLASVHDDILRLPQGYDTEVGERG------VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEH 488 (569)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCC------CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 12345677889999999999999999999999984 48999999999999999 999999984
Q ss_pred -----------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -----------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| ......||+|+ +|++|++++.|++++++++.
T Consensus 489 ~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 489 QILHNLRQWGEGRTVIISAHRLSALTEASEIL-VMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHHHHHhCCCEEEEEecchhHHHcCCEEE-EEeCCEEEEecCHHHHHHcC
Confidence 799999999 34445699996 49999999999999998653
No 85
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-39 Score=299.69 Aligned_cols=219 Identities=16% Similarity=0.203 Sum_probs=162.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.|+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQ---A---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEEEECCee---e---ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 56899999999997532 4 77799999999999999999999999999999996311111479999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+.+|+ .++............++++.++++.+++.+.+.
T Consensus 78 ~~--~~~~~~~~~i~~v~q~~~~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 140 (253)
T PRK14242 78 PH--VDVVELRRRVGMVFQKPNPFPKSIFENV-----------AYGLRVNGVKDKAYLAERVERSLRHAALWDEVK---- 140 (253)
T ss_pred cc--cCHHHHhhcEEEEecCCCCCcCcHHHHH-----------HHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh----
Confidence 00 0111123457788877654433344444 332211111122344577888999999864220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 141 ---------~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~ 211 (253)
T PRK14242 141 ---------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQA 211 (253)
T ss_pred ---------HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
.++||++++ |++|++++.|++++++..+.+.+++.++
T Consensus 212 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK14242 212 ARVSDVTAF-FYMGKLIEVGPTEQIFTRPREKQTEDYI 248 (253)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHcCCCchHHHHHh
Confidence 889999965 9999999999999998887776665543
No 86
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.6e-39 Score=298.85 Aligned_cols=205 Identities=19% Similarity=0.239 Sum_probs=154.3
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++. . + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~-~--~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 68 (236)
T cd03219 1 LEVRGLTKRFGGL-V--A---LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITGLP- 68 (236)
T ss_pred CeeeeeEEEECCE-E--E---ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCCCC-
Confidence 5789999999753 2 4 666999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhh-ccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELV-IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....+..++|++|+...+.++ +.+|+.+..... ... .... ..........+++.++++.+++.+
T Consensus 69 --~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 135 (236)
T cd03219 69 --PHEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR-TGS--GLLLARARREEREARERAEELLERVGLAD-------- 135 (236)
T ss_pred --HHHHHhcCEEEEecccccccCCCHHHHHHHHHhhc-ccc--ccccccccccHHHHHHHHHHHHHHcCccc--------
Confidence 0111233567777776655543 555554332100 000 0000 000012344567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |+|+|++|| +.+
T Consensus 136 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~ 206 (236)
T cd03219 136 ---------LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV 206 (236)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 45888999999999999999999 999999984 789999999 577
Q ss_pred hccccEEEEEecCCeEeecCCccccccCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
..+||++++ |++|++++.|++++++..+
T Consensus 207 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 207 MSLADRVTV-LDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred HHhCCEEEE-EeCCEEEeecCHHHhccCC
Confidence 889999965 9999999999998886643
No 87
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=309.61 Aligned_cols=206 Identities=13% Similarity=0.171 Sum_probs=157.7
Q ss_pred cEEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||+++|+++.. ..+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKA---LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCCCccccc---eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeccc
Confidence 3899999999975321 124 777999999999999999999999999999999999 999999999877531
Q ss_pred ccc-------------c-------cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHH
Q 019066 148 TYF-------------L-------QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN 207 (346)
Q Consensus 148 ~~~-------------~-------~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~ 207 (346)
... . ......++.++|++|++. ..++..++.+|+.++.... .....+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~---------~~l~~~tv~e~i~~~~~~~-~~~~~~~~~ 143 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAE---------YQLFEQTIEKDIIFGPVSM-GVSKEEAKK 143 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCcc---------cccccccHHHHHHhhHHHc-CCCHHHHHH
Confidence 100 0 000011234455555431 1233346677776654322 233456677
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 269 (346)
++.++++.+||... .+++++.+||||||||++||||| ||||++||.
T Consensus 144 ~~~~~l~~~gL~~~----------------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~ 207 (305)
T PRK13651 144 RAAKYIELVGLDES----------------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI 207 (305)
T ss_pred HHHHHHHHcCCChh----------------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 89999999999632 46889999999999999999999 999999984
Q ss_pred -------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|.|||+||| +.+.++||||++ |++|++++.|++++++..+
T Consensus 208 l~~l~~~g~tiiivtHd~~~~~~~adrv~v-l~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 208 FDNLNKQGKTIILVTHDLDNVLEWTKRTIF-FKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred HHHHHHCCCEEEEEeeCHHHHHHhCCEEEE-EECCEEEEECCHHHHhcCH
Confidence 899999999 568899999975 9999999999999988663
No 88
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.2e-39 Score=304.18 Aligned_cols=202 Identities=17% Similarity=0.207 Sum_probs=157.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 73 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC---I---FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIPA 73 (269)
T ss_pred cceEEEeCeEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999998742
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.. .......++.++|++|+...+..+ +.+|+.+. .......+....++++.++++.+++.+
T Consensus 74 ~~-~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~-----------~~~~~~~~~~~~~~~~~~~l~~~gl~~------ 135 (269)
T PRK11831 74 MS-RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP-----------LREHTQLPAPLLHSTVMMKLEAVGLRG------ 135 (269)
T ss_pred cC-hhhHHHHhhcEEEEecccccCCCCCHHHHHHHH-----------HHHccCCCHHHHHHHHHHHHHHcCChh------
Confidence 11 000111134567888876655443 55554432 111101123334567888999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 136 -----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 136 -----------AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 46888999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+.+.++||++++ |++|++++.|++++++..+
T Consensus 205 ~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 205 PEVLSIADHAYI-VADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHHHHhhCEEEE-EECCEEEEeCCHHHHhcCC
Confidence 568889999965 9999999999999987654
No 89
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.4e-39 Score=315.67 Aligned_cols=194 Identities=16% Similarity=0.188 Sum_probs=153.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee----CCCcccccccccCCCCccceeec
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYD 167 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~----i~~~~~~~~~~~~r~~i~~~~~d 167 (346)
|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|++ +......+.....++.++|++|+
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 677999999999999999999999999999999999 999999999973 32110001111223467777777
Q ss_pred ccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCC
Q 019066 168 TRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 246 (346)
Q Consensus 168 ~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~L 246 (346)
...+..+ +.+|+ .++.... ..+..+.++++.++++.+||.+ ..++++.+|
T Consensus 115 ~~l~p~~Tv~eNi-----------~~~~~~~-g~~~~~~~~~a~e~le~vgL~~-----------------~~~~~~~~L 165 (382)
T TIGR03415 115 FALMPWLTVEENV-----------AFGLEMQ-GMPEAERRKRVDEQLELVGLAQ-----------------WADKKPGEL 165 (382)
T ss_pred CcCCCCCcHHHHH-----------HHHHHhc-CCCHHHHHHHHHHHHHHcCCch-----------------hhcCChhhC
Confidence 6655433 55554 4332211 1223455678899999999987 568999999
Q ss_pred CHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEe
Q 019066 247 DVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELL 298 (346)
Q Consensus 247 SgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv 298 (346)
|||||||++||||| ||||++||+ ++|+|+||| +++.++||||++ |++|+++
T Consensus 166 SgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~v-l~~G~iv 244 (382)
T TIGR03415 166 SGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAI-MEGGRII 244 (382)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEE
Confidence 99999999999999 999999984 789999999 578899999975 9999999
Q ss_pred ecCCccccccCCCCCChHHHHH
Q 019066 299 GIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 299 ~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.|++++++.+|...+++.++.
T Consensus 245 ~~g~~~ei~~~p~~~~~~~~~~ 266 (382)
T TIGR03415 245 QHGTPEEIVLNPANDYVADFVA 266 (382)
T ss_pred EecCHHHHhhCcchHHHHHHhc
Confidence 9999999998888777777665
No 90
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.7e-39 Score=294.80 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=146.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc-----cCCCCCCCCceEEECceeC
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF-----ENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~-----~~~~~~p~~G~I~~~g~~i 145 (346)
|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-----~~~G~i~~~g~~~ 69 (227)
T cd03260 1 IELRDLNVYYGDKH---A---LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-----PDEGEVLLDGKDI 69 (227)
T ss_pred CEEEEEEEEcCCce---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-----CCCeEEEECCEEh
Confidence 57999999997643 3 77799999999999999999999999999999999 7 9999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.... ......++.++|++|+...+ ..++.+|+.++............++++.++++.+++.+
T Consensus 70 ~~~~--~~~~~~~~~i~~~~q~~~~~-----------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 131 (227)
T cd03260 70 YDLD--VDVLELRRRVGMVFQKPNPF-----------PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD----- 131 (227)
T ss_pred hhcc--hHHHHHHhhEEEEecCchhc-----------cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-----
Confidence 4110 00111133556666664433 22455555443221111112234577889999999986
Q ss_pred cceeeeeechhhhcccC--CCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSM--EGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~--~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH- 278 (346)
..++. +.+||||||||++||||| ||||++||. ..|+|++||
T Consensus 132 ------------~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~ 199 (227)
T cd03260 132 ------------EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199 (227)
T ss_pred ------------HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEecc
Confidence 23454 599999999999999999 999999984 479999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+.+..+||++++ |++|++++.|+++++
T Consensus 200 ~~~~~~~~d~i~~-l~~G~i~~~g~~~~~ 227 (227)
T cd03260 200 MQQAARVADRTAF-LLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhCCEEEE-EeCCEEEEecCcccC
Confidence 567889999965 999999999987654
No 91
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-39 Score=310.26 Aligned_cols=221 Identities=14% Similarity=0.156 Sum_probs=163.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++|++++|.++.. .+ |+|+||+|++||++||+||||||||||+++|+|+++.....|++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~~~-~~---L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTK-HV---LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCCCc-ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 458999999999964321 14 77799999999999999999999999999999998621112579999999999851
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|++..+.+.+.+|+ .++.......+....++.+.++++.+++.+.+
T Consensus 154 ~~--~~~~~lr~~i~~v~q~~~~~~~ti~eNi-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l----- 215 (329)
T PRK14257 154 KK--ISSLELRTRIGMVFQKPTPFEMSIFDNV-----------AYGPRNNGINDRKILEKIVEKSLKSAALWDEV----- 215 (329)
T ss_pred cc--cchHhhhccEEEEecCCccCCCcHHHHH-----------HhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-----
Confidence 00 0001124456777777655544444444 43322111111222345577889999886432
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
++ ..++++.+||||||||++||||| ||||++||. ++|+|+||| +.+
T Consensus 216 --~~------~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i 287 (329)
T PRK14257 216 --KD------DLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQA 287 (329)
T ss_pred --hh------hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11 24667889999999999999999 999999984 799999999 568
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
.++||||++ |++|+|++.|++++++.+|.++.++.++
T Consensus 288 ~~~~Driiv-l~~G~i~e~g~~~~l~~~~~~~~~~~~~ 324 (329)
T PRK14257 288 QRISDETVF-FYQGWIEEAGETKTIFIHPKNKRTKDYI 324 (329)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcCCCcHHHHHHh
Confidence 889999965 9999999999999999999887766655
No 92
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-39 Score=304.17 Aligned_cols=204 Identities=13% Similarity=0.181 Sum_probs=156.3
Q ss_pred EEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|+++.. ..+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA---IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITITHK 74 (286)
T ss_pred EEEEEEEEEECCCCccccCc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 899999999964320 124 777999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.........++.++|++|++.. .++..++.+|+.++.... ........+++.++++.+||...
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------- 137 (286)
T PRK13646 75 TKDKYIRPVRKRIGMVFQFPES---------QLFEDTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRD------- 137 (286)
T ss_pred cccchHHHHHhheEEEecChHh---------ccchhhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChh-------
Confidence 0000011123345666665310 123346667776654321 12344566788999999999721
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. |.|||+||| +.
T Consensus 138 ---------~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~ 208 (286)
T PRK13646 138 ---------VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE 208 (286)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 35788999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+|||+++ |++|++++.|++++++..
T Consensus 209 ~~~~~dri~~-l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 209 VARYADEVIV-MKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 7889999975 999999999999888765
No 93
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.1e-39 Score=300.10 Aligned_cols=209 Identities=15% Similarity=0.157 Sum_probs=160.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc-
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY- 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~- 149 (346)
|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 i~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~ 69 (252)
T TIGR03005 1 VRFSDVTKRFGILT---V---LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPG 69 (252)
T ss_pred CEEEEEEEEeCCee---E---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccccc
Confidence 57999999997532 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred ------c--ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 150 ------F--LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 150 ------~--~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
. .......++.+++++|+...+... +.+|+.+ +............++++.++++.+++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 138 (252)
T TIGR03005 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE-----------APVLVLGMARAEAEKRAMELLDMVGLAD 138 (252)
T ss_pred ccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHH-----------HHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence 0 000011134567777776554332 5555433 2110001123445567889999999987
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
..++.+.+|||||+||++||||| ||||++||. |.|+|
T Consensus 139 -----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 139 -----------------KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred -----------------HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 45888999999999999999999 999999983 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
++|| +.+..+|||+++ |++|++++.|++++++..+.+++++.++
T Consensus 202 ivsH~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 247 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCF-FDKGRIVEQGKPDEIFRQPKEERTREFL 247 (252)
T ss_pred EEeCCHHHHHHhcCEEEE-EECCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 9999 567789999975 9999999999999998888877766654
No 94
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.1e-39 Score=311.67 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=160.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 39 ~~~i~i~nl~k~y~~~~---~---l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~~ 107 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA---V---VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVPA 107 (340)
T ss_pred ceeEEEEEEEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECCc
Confidence 45799999999997632 4 677999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.....++.++|++|+...+..+ +.+|+.++... . ........+++.++++.++|.+
T Consensus 108 -----~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-----------~-~~~~~~~~~~~~~ll~~~~L~~------ 164 (340)
T PRK13536 108 -----RARLARARIGVVPQFDNLDLEFTVRENLLVFGRY-----------F-GMSTREIEAVIPSLLEFARLES------ 164 (340)
T ss_pred -----chHHHhccEEEEeCCccCCCCCcHHHHHHHHHHH-----------c-CCCHHHHHHHHHHHHHHcCCch------
Confidence 1112245678888887665554 66666543211 0 1122345567788999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||+ |.|||++|| +
T Consensus 165 -----------~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 165 -----------KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred -----------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 56888999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++.++||||++ |++|+++..|+++++...
T Consensus 234 e~~~~~d~i~i-l~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 234 EAERLCDRLCV-LEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhh
Confidence 78899999975 999999999999988654
No 95
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-39 Score=303.24 Aligned_cols=200 Identities=16% Similarity=0.216 Sum_probs=155.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYT---LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLTEE 74 (279)
T ss_pred ceEEEEeEEEEcCCCCcCee---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECCcC
Confidence 36999999999974321124 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ... .++.++|++|++. .+. ..++.+|+.++.... ........+++.++++.++|.+
T Consensus 75 ~---~~~-~~~~i~~v~q~~~~~~~----------~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------- 132 (279)
T PRK13650 75 N---VWD-IRHKIGMVFQNPDNQFV----------GATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQD------- 132 (279)
T ss_pred c---HHH-HHhhceEEEcChHHhcc----------cccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHh-------
Confidence 0 001 1234566666542 221 225556655543221 1234455678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 133 ----------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 133 ----------FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 46889999999999999999999 999999983 789999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
.+ .+|||+++ |++|++++.|++++++..+
T Consensus 203 ~~-~~~dri~~-l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 203 EV-ALSDRVLV-MKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HH-HhCCEEEE-EECCEEEEECCHHHHHcCh
Confidence 55 57999965 9999999999999887664
No 96
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=300.56 Aligned_cols=219 Identities=19% Similarity=0.223 Sum_probs=163.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++.. + |+|+||+|++||+++|+|+||||||||+++|+|++++....|++|+|.++|+++..
T Consensus 10 ~~~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQ---A---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCCee---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 56899999999997532 4 77799999999999999999999999999999999711101279999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+.+|+. ++.... .......++++.++++.+++.....
T Consensus 84 ~~--~~~~~~~~~i~~v~q~~~~~~~tv~enl~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~---- 145 (258)
T PRK14268 84 PD--VDVVELRKNVGMVFQKPNPFPMSIYDNVA-----------YGPRIH-GANKKDLDGVVENALRSAALWDETS---- 145 (258)
T ss_pred cc--chHHHHhhhEEEEecCCccCcccHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCCcchh----
Confidence 00 00111234567777776544323455543 322111 1122344567888999999853110
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+|||||+||++||||| ||||++||. ++|+|++|| +.+
T Consensus 146 ---------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~ 216 (258)
T PRK14268 146 ---------DRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA 216 (258)
T ss_pred ---------hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH
Confidence 035788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++|||+++ |++|++++.|++++++.++.+++++.++.
T Consensus 217 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK14268 217 ARISDYTGF-FLMGELIEFGQTRQIFHNPREKSTEDYIT 254 (258)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcCCCCHHHHHHhh
Confidence 889999975 99999999999999998888877766543
No 97
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.2e-39 Score=365.79 Aligned_cols=222 Identities=12% Similarity=0.046 Sum_probs=175.1
Q ss_pred hhhHHHHHHhhhhhhhh---cc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHH
Q 019066 48 RRDAVFREVLQSYDQLR---TR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 116 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~---~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKS 116 (346)
.+.+|+.++++.+++.. +. ....|+|+||+++|+++.. .+ |+||||+|++||++||||+||||||
T Consensus 1251 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~v---L~~is~~I~~GekiaIVGrTGsGKS 1326 (1522)
T TIGR00957 1251 VAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLD-LV---LRHINVTIHGGEKVGIVGRTGAGKS 1326 (1522)
T ss_pred HHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCc-cc---ccceeEEEcCCCEEEEECCCCCCHH
Confidence 44567778776554432 10 1235999999999976432 14 6779999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh
Q 019066 117 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 196 (346)
Q Consensus 117 TLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~ 196 (346)
||+++|.|+++ |++|+|.+||.|+. . +..++.|...++|+|++.+|..++++|+...
T Consensus 1327 TL~~lL~rl~~-----~~~G~I~IdG~dI~------~---------i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--- 1383 (1522)
T TIGR00957 1327 SLTLGLFRINE-----SAEGEIIIDGLNIA------K---------IGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--- 1383 (1522)
T ss_pred HHHHHHhcCcc-----CCCCeEEECCEEcc------c---------cCHHHHHhcCeEECCCCcccCccHHHHcCcc---
Confidence 99999999999 99999999999997 2 2233334444444555555555566665410
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCC
Q 019066 197 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 267 (346)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 267 (346)
....++++.++++.+++.+++..+|+||||.|+|+|. +||||||||++||||| |||||+|
T Consensus 1384 -----~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~------~LSgGQrQrl~LARALLr~~~ILiLDEaTSal 1452 (1522)
T TIGR00957 1384 -----SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE------NLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452 (1522)
T ss_pred -----cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCC------cCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 0123466889999999999999999999999999854 8999999999999999 9999999
Q ss_pred CC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 268 RD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 268 d~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|. ++|+|+||| +.+. .||||+| |++|+|++.|+|++++++
T Consensus 1453 D~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIlV-ld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1453 DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVIV-LDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEE-EECCEEEEECCHHHHHhC
Confidence 84 899999999 3454 4999965 999999999999999876
No 98
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-39 Score=296.65 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=154.1
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
||+++|++++|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA---LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLTLL 72 (233)
T ss_pred CeEEecceEEccCCCCceee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccC
Confidence 489999999997541 0024 677999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+..+ +.+|+.+ +.... ........+++.++++.+++.+
T Consensus 73 ~-~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (233)
T cd03258 73 S-GKELRKARRRIGMIFQHFNLLSSRTVFENVAL-----------PLEIA-GVPKAEIEERVLELLELVGLED------- 132 (233)
T ss_pred C-HHHHHHHHhheEEEccCcccCCCCcHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 0 000001134567777776555433 5555433 21111 1122344567889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+|||||+||++||||| ||||++||. |+|+|++|| +
T Consensus 133 ----------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 133 ----------KADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred ----------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45888999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+||++++ |++|++++.|+++++...
T Consensus 203 ~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 203 VVKRICDRVAV-MEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHHhCCEEEE-EECCEEEEecCHHHHhcC
Confidence 67889999965 999999999998877654
No 99
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-39 Score=293.68 Aligned_cols=190 Identities=13% Similarity=0.171 Sum_probs=149.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 67 (220)
T cd03265 1 IEVENLVKKYGDFE---A---VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVRE-- 67 (220)
T ss_pred CEEEEEEEEECCEE---e---eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecCcC--
Confidence 57999999997532 4 777999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ...++.++|++|+...+..+ +.+|+. +..... .......++++.++++.+++.+
T Consensus 68 --~-~~~~~~i~~~~q~~~~~~~~tv~~~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 123 (220)
T cd03265 68 --P-REVRRRIGIVFQDLSVDDELTGWENLY-----------IHARLY-GVPGAERRERIDELLDFVGLLE--------- 123 (220)
T ss_pred --h-HHHhhcEEEecCCccccccCcHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 0 11133567777776544433 444443 322111 1123345667899999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 124 --------~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~ 195 (220)
T cd03265 124 --------AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEA 195 (220)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999984 689999999 578
Q ss_pred hccccEEEEEecCCeEeecCCcccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
..+|||+++ |++|++++.|+++++
T Consensus 196 ~~~~d~i~~-l~~G~i~~~~~~~~~ 219 (220)
T cd03265 196 EQLCDRVAI-IDHGRIIAEGTPEEL 219 (220)
T ss_pred HHhCCEEEE-EeCCEEEEeCChHHc
Confidence 889999965 999999999877653
No 100
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.9e-40 Score=336.83 Aligned_cols=223 Identities=15% Similarity=0.142 Sum_probs=170.6
Q ss_pred hhhHHHHHHhhhhhhhhcc-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
...+|+.++++.+++.... ....++++|++|+|+++.. .+ |+|+||+|++||+++|+||||||||||+++|
T Consensus 289 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~-~~---l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll 364 (544)
T TIGR01842 289 QAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKK-PT---LRGISFRLQAGEALAIIGPSGSGKSTLARLI 364 (544)
T ss_pred HHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCc-cc---cccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3345677777654432211 1235999999999975421 14 6779999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.++|.++.... ....++.+++++|++. ++..++++|+.+...
T Consensus 365 ~g~~~-----~~~G~i~~~g~~i~~~~----~~~~~~~i~~v~q~~~-----------lf~~ti~~Ni~~~~~------- 417 (544)
T TIGR01842 365 VGIWP-----PTSGSVRLDGADLKQWD----RETFGKHIGYLPQDVE-----------LFPGTVAENIARFGE------- 417 (544)
T ss_pred hCCCC-----CCCceEEECCEehhhCC----HHHHhhheEEecCCcc-----------cccccHHHHHhccCC-------
Confidence 99999 99999999999886110 0111334555555544 444456666653211
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
...++++.++++.+++++.+..+|+|++|.++|++ .+||||||||++||||| ||||++||.
T Consensus 418 ~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g------~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGG------ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCCc------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 12245677889999999999999999999999984 48999999999999999 999999983
Q ss_pred ------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 ------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++..
T Consensus 492 ~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 492 ALANAIKALKARGITVVVITHRPSLLGCVDKIL-VLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEeeCCHHHHhh
Confidence 689999999 34556799996 599999999999987753
No 101
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-39 Score=296.82 Aligned_cols=204 Identities=19% Similarity=0.270 Sum_probs=155.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++... + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~~--~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 68 (242)
T cd03295 1 IEFENVTKRYGGGKK--A---VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIREQ-- 68 (242)
T ss_pred CEEEEEEEEeCCcce--E---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcCcC--
Confidence 578999999976222 3 777999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc-ccccccce
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP-SVIRKVNF 228 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 228 (346)
. . ...++.++|++|+...+..+ +.+|+. +..... ........+++.++++.+++.+ .
T Consensus 69 ~-~-~~~~~~i~~~~q~~~~~~~~tv~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~------- 127 (242)
T cd03295 69 D-P-VELRRKIGYVIQQIGLFPHMTVEENIA-----------LVPKLL-KWPKEKIRERADELLALVGLDPAE------- 127 (242)
T ss_pred C-h-HHhhcceEEEccCccccCCCcHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCCcHH-------
Confidence 0 0 11133566777765544332 444443 322111 1123445567889999999974 1
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.
T Consensus 128 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~ 198 (242)
T cd03295 128 ---------FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198 (242)
T ss_pred ---------HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 35788999999999999999999 999999883 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
+..+||++++ |++|++++.|+++++...+.++.+..
T Consensus 199 ~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (242)
T cd03295 199 AFRLADRIAI-MKNGEIVQVGTPDEILRSPANDFVAE 234 (242)
T ss_pred HHHhCCEEEE-EECCEEEEecCHHHHHcCCCChHHHH
Confidence 7889999965 99999999999988876655444333
No 102
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-39 Score=299.21 Aligned_cols=220 Identities=15% Similarity=0.228 Sum_probs=163.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|++++.+..+++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH---A---LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECCee---e---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 56899999999997532 3 77799999999999999999999999999999998611111268999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . .....++.++|++|+...+...+.+|+ .+...........+..+++.++++.+++.+.+.
T Consensus 84 ~~-~-~~~~~~~~i~~v~q~~~~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 146 (259)
T PRK14274 84 GK-V-DLVELRKNIGMVFQKGNPFPQSIFDNV-----------AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK---- 146 (259)
T ss_pred cc-c-CHHHHhhceEEEecCCcccccCHHHHH-----------HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh----
Confidence 00 0 011123456788877654433344444 332211111122344567888899999864210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 147 ---------~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~ 217 (259)
T PRK14274 147 ---------DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQA 217 (259)
T ss_pred ---------hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++|||+++ |++|++++.|++++++.++.++++..++.
T Consensus 218 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (259)
T PRK14274 218 ARVSDQTAF-FYMGELVECNDTNKMFSNPDDQRTLDYIT 255 (259)
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHhhCCCCHHHHHhhc
Confidence 889999965 99999999999999998887777666543
No 103
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3e-39 Score=308.31 Aligned_cols=196 Identities=13% Similarity=0.117 Sum_probs=156.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~~~i~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 70 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKV---V---VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVPS 70 (303)
T ss_pred CcEEEEEeEEEEeCCeE---E---EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc
Confidence 34799999999997532 4 666999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.....++.++|++|+...+..+ +.+|+.++.. .. ..+....++++.++++.+++.+
T Consensus 71 -----~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-----------~~-~~~~~~~~~~~~~ll~~~~l~~------ 127 (303)
T TIGR01288 71 -----RARLARVAIGVVPQFDNLDPEFTVRENLLVFGR-----------YF-GMSTREIEAVIPSLLEFARLES------ 127 (303)
T ss_pred -----cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHH-----------Hc-CCCHHHHHHHHHHHHHHCCChh------
Confidence 1111244678888876555443 5555543221 01 1123344567788999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
.+++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 128 -----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 128 -----------KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 46888999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+||++++ |++|+++..|+++++...
T Consensus 197 ~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 197 EAERLCDRLCV-LESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhh
Confidence 78889999975 999999999999888654
No 104
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-39 Score=289.48 Aligned_cols=185 Identities=18% Similarity=0.247 Sum_probs=144.7
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 66 (213)
T cd03259 1 LELKGLSKTYGSVR---A---LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTG--- 66 (213)
T ss_pred CeeeeeEEEeCCee---e---ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCc---
Confidence 57899999997532 4 677999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
....++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 122 (213)
T cd03259 67 ---VPPERRNIGMVFQDYALFPHL----------TVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEG---------- 122 (213)
T ss_pred ---CchhhccEEEEcCchhhccCC----------cHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 111233566777765544332 3344443322111 1122344567889999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.+.
T Consensus 123 -------~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 195 (213)
T cd03259 123 -------LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEAL 195 (213)
T ss_pred -------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 45888999999999999999999 999999983 789999999 5678
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
++||++++ |++|++++.|
T Consensus 196 ~~~d~v~~-l~~G~i~~~g 213 (213)
T cd03259 196 ALADRIAV-MNEGRIVQVG 213 (213)
T ss_pred HhcCEEEE-EECCEEEecC
Confidence 89999965 9999998765
No 105
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=285.63 Aligned_cols=197 Identities=13% Similarity=0.193 Sum_probs=162.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||++.+++++|++. +.+ ++||||++++||++||+|||||||||+||+|++++. |++|.|+++|.|..
T Consensus 1 Ml~v~~l~K~y~~~--v~A---vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~--- 67 (245)
T COG4555 1 MLEVTDLTKSYGSK--VQA---VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTV--- 67 (245)
T ss_pred CeeeeehhhhccCH--Hhh---hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecccc---
Confidence 68999999999873 347 555999999999999999999999999999999999 99999999999875
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
......|+++|..+.....+..+ +.||+.+|... . .....+.++++.++.+.++|.+
T Consensus 68 --~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L-----------~-~l~~~~~kari~~l~k~l~l~~-------- 125 (245)
T COG4555 68 --RDPSFVRRKIGVLFGERGLYARLTARENLKYFARL-----------N-GLSRKEIKARIAELSKRLQLLE-------- 125 (245)
T ss_pred --cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH-----------h-hhhhhHHHHHHHHHHHHhChHH--------
Confidence 12233466778777444444444 55665554431 1 2335678899999999999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC----------------CCceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tviiiTH--~~~ 281 (346)
.++++..+||-||||||+||||| |||||||| +|+++|++|| .++
T Consensus 126 ---------~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev 196 (245)
T COG4555 126 ---------YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196 (245)
T ss_pred ---------HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH
Confidence 67999999999999999999999 99999987 2999999999 689
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
..+|||+++ +++|++|..|+.+++.....
T Consensus 197 ealCDrviv-lh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 197 EALCDRVIV-LHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred HHhhheEEE-EecCcEEEcCCHHHHHHHHh
Confidence 999999965 99999999999988765543
No 106
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.2e-39 Score=306.57 Aligned_cols=195 Identities=13% Similarity=0.158 Sum_probs=160.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+++++||+++|+.... + |+||||+|++||++||+||||||||||+|+|+|+.+ |++|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~~~~~~--~---l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~-- 71 (293)
T COG1131 4 VIEVRNLTKKYGGDKT--A---LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVK-- 71 (293)
T ss_pred eeeecceEEEeCCCCE--E---EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCcc--
Confidence 5899999999984222 4 667999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
...-.++.++|+++++..+..+ +.|++.++... ... +....++++.++++.++|.+
T Consensus 72 ---~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l-----------~~~-~~~~~~~~~~~~l~~~~L~~-------- 128 (293)
T COG1131 72 ---EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL-----------YGL-SKEEAEERIEELLELFGLED-------- 128 (293)
T ss_pred ---CHHHHHhheEEEccCCCCCccccHHHHHHHHHHH-----------hCC-ChhHHHHHHHHHHHHcCCch--------
Confidence 1112245678888888766666 67776655432 111 12455678999999999997
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C-ceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g-~tviiiTH--~~ 280 (346)
..+++..+||+|||||++||+|| ||||+|||+ | +|||++|| +.
T Consensus 129 ---------~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e 199 (293)
T COG1131 129 ---------KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE 199 (293)
T ss_pred ---------hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH
Confidence 34778999999999999999999 999999995 4 89999999 78
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+||||++ |++|+++..|+++++...
T Consensus 200 ~~~~~d~v~i-l~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 200 AEELCDRVII-LNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHhCCEEEE-EeCCEEEEeCCHHHHHHh
Confidence 8889999975 999999999988876543
No 107
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.6e-39 Score=317.54 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=158.3
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~L~~~nls~~y~~~~---v---L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~~~ 70 (402)
T PRK09536 2 PMIDVSDLSVEFGDTT---V---LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVEAL 70 (402)
T ss_pred ceEEEeeEEEEECCEE---E---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcCcC
Confidence 4799999999997633 4 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ... .++.+++++|+...+..+ +.+|+.+.... ............++++.++++.+++.+
T Consensus 71 ~---~~~-~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~--------~~~~~~~~~~~~~~~v~~~le~vgl~~------- 131 (402)
T PRK09536 71 S---ARA-ASRRVASVPQDTSLSFEFDVRQVVEMGRTP--------HRSRFDTWTETDRAAVERAMERTGVAQ------- 131 (402)
T ss_pred C---HHH-HhcceEEEccCCCCCCCCCHHHHHHhccch--------hcccccCCCHHHHHHHHHHHHHcCCch-------
Confidence 1 111 134678888876654444 55554432110 000000112345678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++|| ++
T Consensus 132 ----------~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~ 201 (402)
T PRK09536 132 ----------FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL 201 (402)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 56889999999999999999999 999999984 789999999 67
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.++|||+++ |++|+++..|++++++..
T Consensus 202 ~~~~adrii~-l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 202 AARYCDELVL-LADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHhCCEEEE-EECCEEEEecCHHHHhCc
Confidence 8899999965 999999999999988764
No 108
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5e-40 Score=287.97 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=164.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|.++|+.|+|+...+ +++|||+|++||+++|+|||||||||.+.++.|+.+ |++|+|.+||.|++
T Consensus 3 ~~L~a~~l~K~y~kr~V------v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~diT-- 69 (243)
T COG1137 3 STLVAENLAKSYKKRKV------VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDEDIT-- 69 (243)
T ss_pred cEEEehhhhHhhCCeee------eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCcccc--
Confidence 46899999999987553 666999999999999999999999999999999999 99999999999997
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhcc-CCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..+.+...|..++|.+|++.-|-.+ |.+|+.. -+.... .....+.+.++.++|+.+++.+
T Consensus 70 -~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~-----------vlE~~~~d~~~~~~~~~l~~LL~ef~i~h------ 131 (243)
T COG1137 70 -KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA-----------VLEIREKDLKKAERKEELDALLEEFHITH------ 131 (243)
T ss_pred -cCChHHHhhcCcccccccchHhhcCcHHHHHHH-----------HHhhhhcchhHHHHHHHHHHHHHHhchHH------
Confidence 2222333455677777777666555 5555443 332222 1122345556789999999998
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
+.+++..+||||||+|+.||||| |||++|.|+ |.-|+|.-| +
T Consensus 132 -----------lr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR 200 (243)
T COG1137 132 -----------LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200 (243)
T ss_pred -----------HhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH
Confidence 67999999999999999999999 999999986 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
+...+|||.++ +++|+++.+|+++++.++|.
T Consensus 201 EtL~i~dRaYI-i~~G~vla~G~p~ei~~n~~ 231 (243)
T COG1137 201 ETLDICDRAYI-ISDGKVLAEGSPEEIVNNED 231 (243)
T ss_pred HHHhhhheEEE-EecCeEEecCCHHHHhcChh
Confidence 88999999976 99999999999999998865
No 109
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=8.6e-39 Score=298.19 Aligned_cols=214 Identities=17% Similarity=0.172 Sum_probs=159.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee---
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~--- 144 (346)
.++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 4 ~~~l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRK---G---CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQL 72 (258)
T ss_pred CceEEEeeeEEEcCCce---e---eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCccccc
Confidence 34799999999997532 3 777999999999999999999999999999999999 999999999987
Q ss_pred --CCCcccccccccCCCCccceeecccc--cccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC
Q 019066 145 --GDGTYFLQEYTIPRGSNSFSLYDTRS--LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 219 (346)
Q Consensus 145 --i~~~~~~~~~~~~r~~i~~~~~d~~~--~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 219 (346)
+............++.++|++|+... +..+ +.+|+ .+.............++++.++++.+++.
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 141 (258)
T PRK11701 73 RDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI-----------GERLMAVGARHYGDIRATAGDWLERVEID 141 (258)
T ss_pred cccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH-----------HHHHHHhccCcHHHHHHHHHHHHHHcCCC
Confidence 43110000001123457888887631 1111 33333 22111111111234456788999999996
Q ss_pred cccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceE
Q 019066 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 273 (346)
Q Consensus 220 ~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tv 273 (346)
+. ..++.+.+||||||||++||||| ||||++||. |.|+
T Consensus 142 ~~----------------~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 205 (258)
T PRK11701 142 AA----------------RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205 (258)
T ss_pred hh----------------HHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 31 35788999999999999999999 999999983 7899
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|++|| +.+..+||++++ |++|++++.|++++++.++.+++++.++.
T Consensus 206 i~isH~~~~~~~~~d~i~~-l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 253 (258)
T PRK11701 206 VIVTHDLAVARLLAHRLLV-MKQGRVVESGLTDQVLDDPQHPYTQLLVS 253 (258)
T ss_pred EEEeCCHHHHHHhcCEEEE-EECCEEEEeCCHHHHhcCCCCHHHHHHHH
Confidence 99999 567789999965 99999999999999988776666555543
No 110
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.1e-39 Score=298.21 Aligned_cols=213 Identities=15% Similarity=0.141 Sum_probs=160.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+.+|+++||++.|++.. + |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHE---V---LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINL 71 (257)
T ss_pred CccEEEeeeEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999988741
Q ss_pred ccc---------ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCC
Q 019066 148 TYF---------LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 148 ~~~---------~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l 218 (346)
... .......++.++|++|+...+..+ ++.+|+.++............++++.++++.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~----------sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl 141 (257)
T PRK10619 72 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM----------TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI 141 (257)
T ss_pred ccccccccccccchHHHHHhhceEEEecCcccCCCC----------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Confidence 000 000111234566777765544332 3334443321111111234456778899999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceE
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 273 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tv 273 (346)
.+.. .++++.+||||||||++||||| ||||++||. |+|+
T Consensus 142 ~~~~----------------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ti 205 (257)
T PRK10619 142 DERA----------------QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 (257)
T ss_pred Chhh----------------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 8621 3778999999999999999999 999999984 7999
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
|+||| +.+..+|||+++ |++|++++.|++++++..+.+++.+.+
T Consensus 206 iivsH~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 251 (257)
T PRK10619 206 VVVTHEMGFARHVSSHVIF-LHQGKIEEEGAPEQLFGNPQSPRLQQF 251 (257)
T ss_pred EEEeCCHHHHHHhcCEEEE-EECCEEEEeCCHHHhhhCccCHHHHHH
Confidence 99999 567789999975 999999999999998877665554443
No 111
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-39 Score=296.67 Aligned_cols=215 Identities=19% Similarity=0.234 Sum_probs=159.5
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|++++.+..|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 2 NKIEIRDLKVSFGQVE---V---LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75 (250)
T ss_pred ceEEEEeeEEEECCee---e---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC
Confidence 3699999999997632 4 777999999999999999999999999999999997211113699999999987511
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. . ...++.++|++|+...+..+ +.+|+. ++...... ....+..+++.++++.+++.+.+.
T Consensus 76 ~---~-~~~~~~i~~v~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 137 (250)
T PRK14247 76 D---V-IELRRRVQMVFQIPNPIPNLSIFENVA-----------LGLKLNRLVKSKKELQERVRWALEKAQLWDEVK--- 137 (250)
T ss_pred C---H-HHHhccEEEEeccCccCCCCcHHHHHH-----------HHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---
Confidence 0 0 11234567777776544332 444443 32211110 122445577889999999864210
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
+.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.
T Consensus 138 ----------~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 207 (250)
T PRK14247 138 ----------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ 207 (250)
T ss_pred ----------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 135788999999999999999999 999999984 789999999 46
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+..+||++++ |++|++++.|++++++..+.++.++.+
T Consensus 208 ~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 244 (250)
T PRK14247 208 AARISDYVAF-LYKGQIVEWGPTREVFTNPRHELTEKY 244 (250)
T ss_pred HHHhcCEEEE-EECCeEEEECCHHHHHcCCccHHHHHH
Confidence 7789999965 999999999999999877665544443
No 112
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.7e-39 Score=299.80 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=159.7
Q ss_pred cEEEeeeEEEeCCCC------ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce
Q 019066 70 LTDAKNKILSYTPGA------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 143 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~------~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~ 143 (346)
+|+++||++.|+... ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~ 73 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV---LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFRGQ 73 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE---eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCE
Confidence 689999999996310 1125 666999999999999999999999999999999999 99999999999
Q ss_pred eCCCcccccccccCCCCccceeeccc--ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
++..... ......++.++|++|+.. .+..+ +.+|+.+ +............++++.++++.+++..
T Consensus 74 ~i~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 141 (265)
T TIGR02769 74 DLYQLDR-KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGE-----------PLRHLTSLDESEQKARIAELLDMVGLRS 141 (265)
T ss_pred EccccCH-HHHHHHhhceEEEecChhhhcCCCCCHHHHHHH-----------HHHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 8751110 011112345778888752 22222 4554432 2111111122344567889999999963
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
. .+++++.+||||||||++||||| ||||++||. |.|||
T Consensus 142 ~----------------~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii 205 (265)
T TIGR02769 142 E----------------DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYL 205 (265)
T ss_pred h----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 2 35888999999999999999999 999999984 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
++|| +.+..+||++++ |++|++++.|++++++. +.+++++.+..
T Consensus 206 ivsH~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 251 (265)
T TIGR02769 206 FITHDLRLVQSFCQRVAV-MDKGQIVEECDVAQLLS-FKHPAGRNLQS 251 (265)
T ss_pred EEeCCHHHHHHHhcEEEE-EeCCEEEEECCHHHHcC-CCCHHHHHHHH
Confidence 9999 567789999965 99999999999999876 46777665543
No 113
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=297.90 Aligned_cols=219 Identities=19% Similarity=0.252 Sum_probs=162.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++|++++|++. . + |+|+||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~~~-~--i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF-H--A---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCCe-E--E---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 5679999999999753 2 4 77799999999999999999999999999999998511111479999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+.+| +.++.......+....++++.++++.+++.+.+.
T Consensus 85 ~--~~~~~~~~~~i~~~~q~~~~~~~tv~~n-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 147 (260)
T PRK10744 85 P--KQDIALLRAKVGMVFQKPTPFPMSIYDN-----------IAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK---- 147 (260)
T ss_pred c--ccchHHHhcceEEEecCCccCcCcHHHH-----------HhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH----
Confidence 0 0011112446778887765443224444 4332211111223445567889999999854210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 148 ---------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~ 218 (260)
T PRK10744 148 ---------DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQA 218 (260)
T ss_pred ---------HHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+||++++ |++|++++.|++++++..+.+++++.++
T Consensus 219 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 255 (260)
T PRK10744 219 ARCSDYTAF-MYLGELIEFGNTDTIFTKPAKKQTEDYI 255 (260)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHHH
Confidence 789999965 9999999999999998887777765543
No 114
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.6e-39 Score=333.29 Aligned_cols=203 Identities=10% Similarity=0.122 Sum_probs=164.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|++.....+ |+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|++||.++.
T Consensus 337 ~i~~~~v~f~y~~~~~~~i---L~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~i~--- 405 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPA---LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-----PQSGRILLDGVDLR--- 405 (576)
T ss_pred eEEEEEEEEECCCCCCCcc---ccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHH---
Confidence 5999999999975321114 677999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. +...+.+...++++|++.++..++++|+.++.. ...++++.++++.+++.+.+..+|+|+
T Consensus 406 ---~---------~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-------~~~~~~~~~~l~~~~l~~~i~~l~~gl 466 (576)
T TIGR02204 406 ---Q---------LDPAELRARMALVPQDPVLFAASVMENIRYGRP-------DATDEEVEAAARAAHAHEFISALPEGY 466 (576)
T ss_pred ---h---------cCHHHHHHhceEEccCCccccccHHHHHhcCCC-------CCCHHHHHHHHHHcCcHHHHHhCCCCC
Confidence 1 112222233344455555555666677665421 112467888999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhcc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 284 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~ 284 (346)
+|.++|.+ ..||||||||++||||+ |||||+||+ ++|+|+||| ......
T Consensus 467 ~t~i~~~g------~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~ 540 (576)
T TIGR02204 467 DTYLGERG------VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLK 540 (576)
T ss_pred CceeCCCC------CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 99999984 38999999999999999 999999984 799999999 455567
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||+++ +|++|++++.|++++++..
T Consensus 541 ~d~vi-~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 541 ADRIV-VMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred CCEEE-EEECCEEEeeecHHHHHHc
Confidence 99996 5999999999999988654
No 115
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-39 Score=296.21 Aligned_cols=214 Identities=15% Similarity=0.158 Sum_probs=160.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+++++|+++.|++. . + |+|+||+|++||+++|+||||||||||+++|+|++++.. |++|+|.++|+++...
T Consensus 2 ~~~~~~l~~~~~~~-~--~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~i~~~- 72 (246)
T PRK14269 2 IAKTTNLNLFYGKK-Q--A---LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVKNQ- 72 (246)
T ss_pred ceeeeeeEEEECCE-e--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEecccC-
Confidence 58999999999753 2 4 777999999999999999999999999999999974111 6899999999987511
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC-ChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+...+.+ |+.++....... .....++++.++++.+++.+.+.
T Consensus 73 ---~~~~~~~~i~~~~q~~~l~~~tv~e-----------ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 133 (246)
T PRK14269 73 ---DVVALRKNVGMVFQQPNVFVKSIYE-----------NISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK----- 133 (246)
T ss_pred ---CHHHHhhhEEEEecCCccccccHHH-----------HhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-----
Confidence 0111234567777776544333444 444332111110 12344567889999999965321
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 134 --------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 134 --------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred --------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 035778899999999999999999 999999884 889999999 5688
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+||++++ |++|++++.|++++++..+.+++++.++.
T Consensus 206 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (246)
T PRK14269 206 RVADYTAF-FHLGELIEFGESKEFFENPKQEKTKAYLS 242 (246)
T ss_pred hhCcEEEE-EECCEEEEECCHHHHHhCCCcHHHHHHhh
Confidence 89999965 99999999999999988776666555443
No 116
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.4e-39 Score=291.16 Aligned_cols=189 Identities=19% Similarity=0.230 Sum_probs=143.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|+++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~~-~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQ-PA---LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLTRLR 71 (216)
T ss_pred CeEEEEEEEEecCCCe-eE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehhhcC
Confidence 5899999999965321 14 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ......++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 72 ~-~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 130 (216)
T TIGR00960 72 G-REIPFLRRHIGMVFQDHRLLSDR----------TVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEG--------- 130 (216)
T ss_pred h-hHHHHHHHhceEEecCccccccc----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 0 00001133567777765544332 3444444332211 1122345677889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|+||| +.+.
T Consensus 131 --------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 131 --------KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeE
Q 019066 283 SLTDRARIRTYLGEL 297 (346)
Q Consensus 283 ~~aDri~v~l~~G~i 297 (346)
.+||++++ |++|+|
T Consensus 203 ~~~d~i~~-l~~G~i 216 (216)
T TIGR00960 203 TYRHRTLT-LSRGRL 216 (216)
T ss_pred HhCCEEEE-EeCCcC
Confidence 89999965 999875
No 117
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=295.79 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=160.7
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh---ccCCCCCC--CCceEEECce
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV---FENDKFAS--ERAQVTYNSS 143 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl---~~~~~~~p--~~G~I~~~g~ 143 (346)
++|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+ ++ | ++|+|.++|+
T Consensus 2 ~~l~~~~~~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----~~~~~G~i~~~g~ 70 (250)
T PRK14245 2 VKIDARDVNFWYGDFH---A---LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP-----ATRLEGEIRIDGR 70 (250)
T ss_pred cEEEEEEEEEEECCEe---E---EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC-----CCCCceEEEECCE
Confidence 5799999999997632 4 7779999999999999999999999999999997 34 4 5899999999
Q ss_pred eCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
++.... ......++.++|++|+...+...+.+|+ .++............++++.++++.+++.+.+.
T Consensus 71 ~~~~~~--~~~~~~~~~i~~v~q~~~~~~~tv~~nl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 137 (250)
T PRK14245 71 NIYDKG--VQVDELRKNVGMVFQRPNPFPKSIFENV-----------AYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK 137 (250)
T ss_pred eccccc--ccHHHHhhheEEEecCCccCcccHHHHH-----------HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh
Confidence 875110 0011123456777777554432344444 332211111112334567888999999865220
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH- 278 (346)
..+++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 138 -------------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~ 204 (250)
T PRK14245 138 -------------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204 (250)
T ss_pred -------------hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 135788999999999999999999 999999984 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.+.++|||+++ |++|++++.|++++++.++.+++++.++.
T Consensus 205 ~~~~~~~~d~v~~-l~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (250)
T PRK14245 205 MQQAARVSDKTAF-FYMGEMVEYDDTKKIFTNPEKEATQNYIT 246 (250)
T ss_pred HHHHHhhCCEEEE-EECCEEEEECCHHHHhcCCCChHHHHhhc
Confidence 567889999965 99999999999999998887777665543
No 118
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-39 Score=332.76 Aligned_cols=219 Identities=16% Similarity=0.217 Sum_probs=169.4
Q ss_pred CCcEEEeeeEEEeCCC--------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE
Q 019066 68 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 139 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~--------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~ 139 (346)
.++|+++||++.|+.. ....+ |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~ 382 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHA---VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEII 382 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEE---EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEE
Confidence 4689999999999621 01225 666999999999999999999999999999999999 9999999
Q ss_pred ECceeCCCcccccccccCCCCccceeeccc--ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHc
Q 019066 140 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 216 (346)
Q Consensus 140 ~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (346)
++|+++..... ......++.++|++|++. .+..+ |.+++ .++............++++.++++.+
T Consensus 383 ~~g~~i~~~~~-~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l-----------~~~~~~~~~~~~~~~~~~~~~~L~~~ 450 (623)
T PRK10261 383 FNGQRIDTLSP-GKLQALRRDIQFIFQDPYASLDPRQTVGDSI-----------MEPLRVHGLLPGKAAAARVAWLLERV 450 (623)
T ss_pred ECCEECCcCCH-HHHHHhcCCeEEEecCchhhcCCCCCHHHHH-----------HHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 99998752110 011112346788888753 33222 44443 33221111112334557888999999
Q ss_pred CCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------C
Q 019066 217 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 270 (346)
Q Consensus 217 ~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g 270 (346)
||.+. .+++++++||||||||++||||| ||||++||. |
T Consensus 451 gL~~~----------------~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g 514 (623)
T PRK10261 451 GLLPE----------------HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514 (623)
T ss_pred CCCHH----------------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 99632 36899999999999999999999 999999983 7
Q ss_pred ceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 271 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 271 ~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
.|||+||| +.+..+||||++ |++|+|++.|++++++.+|.++|++.++.++.
T Consensus 515 ~tvi~isHdl~~v~~~~dri~v-l~~G~iv~~g~~~~i~~~p~~~~~~~l~~~~~ 568 (623)
T PRK10261 515 IAYLFISHDMAVVERISHRVAV-MYLGQIVEIGPRRAVFENPQHPYTRKLMAAVP 568 (623)
T ss_pred CEEEEEeCCHHHHHHhCCEEEE-EECCEEEEecCHHHHhcCCCCHHHHHHHhhCC
Confidence 89999999 578899999975 99999999999999999999999988887654
No 119
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=297.58 Aligned_cols=221 Identities=19% Similarity=0.222 Sum_probs=163.0
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+.++|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++.
T Consensus 18 ~~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKR---A---VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEeCCce---e---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 356899999999997533 4 7779999999999999999999999999999998631111158999999999875
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
... ......++.++|++|+...+...+.+|+. ++............++.+.++++.+++...+.
T Consensus 92 ~~~--~~~~~~~~~i~~v~q~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 155 (268)
T PRK14248 92 DSN--INVVNLRREIGMVFQKPNPFPKSIYNNIT-----------HALKYAGERRKSVLDEIVEESLTKAALWDEVK--- 155 (268)
T ss_pred ccc--ccHHHHhccEEEEecCCccCcccHHHHHH-----------HHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH---
Confidence 110 00111234567777776554434455443 32111111112234566778899998863210
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
+.+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 156 ----------~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 225 (268)
T PRK14248 156 ----------DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ 225 (268)
T ss_pred ----------HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHH
Confidence 135788999999999999999999 999999984 689999999 46
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+..+|||+++ |++|++++.|++++++.++.+++++.++.
T Consensus 226 ~~~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 264 (268)
T PRK14248 226 ALRVSDRTAF-FLNGDLVEYDQTEQIFTSPKQQKTEDYIN 264 (268)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHHHh
Confidence 7889999965 99999999999999998888877766554
No 120
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=295.26 Aligned_cols=216 Identities=17% Similarity=0.199 Sum_probs=160.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC---CCceEEECcee
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSV 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p---~~G~I~~~g~~ 144 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++.. | ++|+|.++|++
T Consensus 3 ~~~l~~~~l~~~~~~~~---~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~ 73 (252)
T PRK14239 3 EPILQVSDLSVYYNKKK---A---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHN 73 (252)
T ss_pred CceEEEEeeEEEECCee---e---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEE
Confidence 35799999999997532 4 77799999999999999999999999999999985311 4 58999999998
Q ss_pred CCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
+... .......++.++|++|+...+...+.+|+ .++............++++.++++.+++.+.+.
T Consensus 74 ~~~~--~~~~~~~~~~i~~v~q~~~~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~- 139 (252)
T PRK14239 74 IYSP--RTDTVDLRKEIGMVFQQPNPFPMSIYENV-----------VYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK- 139 (252)
T ss_pred CcCc--ccchHhhhhcEEEEecCCccCcCcHHHHH-----------HHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-
Confidence 7410 00111123456777777654432344444 332211111112334567788899998864221
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-- 278 (346)
..+++.+.+||||||||++||||| ||||++||. +.|+|++||
T Consensus 140 ------------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 207 (252)
T PRK14239 140 ------------DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM 207 (252)
T ss_pred ------------HHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCH
Confidence 135788999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+.+..+|||+++ |++|++++.|++++++..|.+++++.++
T Consensus 208 ~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 247 (252)
T PRK14239 208 QQASRISDRTGF-FLDGDLIEYNDTKQMFMNPKHKETEDYI 247 (252)
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence 468889999965 9999999999999999888776665544
No 121
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=309.45 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=158.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||++ ||+++|++. . + |+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~-~l~k~~~~~--~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~~~~ 66 (352)
T PRK11144 1 MLEL-NFKQQLGDL--C-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLFDAE 66 (352)
T ss_pred CeEE-EEEEEeCCE--E-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccc
Confidence 5788 999999752 1 3 6999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
........++.++|++|+...+..+ ++.+|+.++.. ....+++.++++.+++.+
T Consensus 67 ~~~~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~--------- 120 (352)
T PRK11144 67 KGICLPPEKRRIGYVFQDARLFPHY----------KVRGNLRYGMA-------KSMVAQFDKIVALLGIEP--------- 120 (352)
T ss_pred cccccchhhCCEEEEcCCcccCCCC----------cHHHHHHhhhh-------hhhHHHHHHHHHHcCCch---------
Confidence 0000111234566666665544333 44455544321 123457889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|+||| +++
T Consensus 121 --------~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~ 192 (352)
T PRK11144 121 --------LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEI 192 (352)
T ss_pred --------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Confidence 56899999999999999999999 999999984 789999999 568
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++|++++.|++++++.+|...+...++.
T Consensus 193 ~~~~d~i~~-l~~G~i~~~g~~~~i~~~p~~~~~~~~~g 230 (352)
T PRK11144 193 LRLADRVVV-LEQGKVKAFGPLEEVWASSAMRPWLPKEE 230 (352)
T ss_pred HHhCCEEEE-EeCCEEEEecCHHHHHhCcchhhhhcccC
Confidence 899999975 99999999999999999998766666554
No 122
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=300.73 Aligned_cols=202 Identities=13% Similarity=0.228 Sum_probs=156.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~~--~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~~ 72 (283)
T PRK13636 3 DYILKVEELNYNYSDGTH--A---LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPIDY 72 (283)
T ss_pred CceEEEEeEEEEeCCCCe--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECCC
Confidence 347999999999964333 4 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|++.. .++..++.+|+.++.... ..+....++++.++++.++|.+
T Consensus 73 ~~--~~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------- 133 (283)
T PRK13636 73 SR--KGLMKLRESVGMVFQDPDN---------QLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEH------- 133 (283)
T ss_pred Cc--chHHHHHhhEEEEecCcch---------hhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 00 0001113356677776421 112234555555433211 1223445577899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 134 ----------~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 134 ----------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred ----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 56889999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+|||+++ |++|++++.|++++++..
T Consensus 204 ~~~~~~dri~~-l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 204 IVPLYCDNVFV-MKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 67789999975 999999999999888764
No 123
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.3e-39 Score=332.43 Aligned_cols=201 Identities=12% Similarity=0.168 Sum_probs=162.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|++... + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 334 ~i~~~~v~~~y~~~~~--~---l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~~ 403 (585)
T TIGR01192 334 AVEFRHITFEFANSSQ--G---VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD-----PTVGQILIDGIDINTVT 403 (585)
T ss_pred eEEEEEEEEECCCCCc--c---ccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC-----CCCCEEEECCEEhhhCC
Confidence 5999999999976443 3 777999999999999999999999999999999999 99999999999875100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.+++++|+ +.++..++++|+.++.. ...++++.++++.+++.+.+..+|+|+
T Consensus 404 ----~~~~~~~i~~v~q~-----------~~lf~~ti~~Ni~~~~~-------~~~~~~~~~a~~~~~~~~~i~~l~~g~ 461 (585)
T TIGR01192 404 ----RESLRKSIATVFQD-----------AGLFNRSIRENIRLGRE-------GATDEEVYEAAKAAAAHDFILKRSNGY 461 (585)
T ss_pred ----HHHHHhheEEEccC-----------CccCcccHHHHHhcCCC-------CCCHHHHHHHHHHhCcHHHHHhccccc
Confidence 00113344555555 44455566777765421 112456778899999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhcc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 284 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~ 284 (346)
+|.+++++ ..||||||||++||||| ||||++||. ++|+|+||| ......
T Consensus 462 ~t~~~~~~------~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~ 535 (585)
T TIGR01192 462 DTLVGERG------NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN 535 (585)
T ss_pred cchhcCCC------CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc
Confidence 99999984 48999999999999999 999999984 799999999 333456
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||+|+ +|++|++++.|+++++.+.
T Consensus 536 ~d~i~-~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 536 ADLVL-FLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred CCEEE-EEECCEEEEECCHHHHHHC
Confidence 99996 5999999999999988765
No 124
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.7e-39 Score=362.69 Aligned_cols=206 Identities=12% Similarity=0.076 Sum_probs=167.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+|+||+|+|+++.. .+ |+||||+|++||.+||||+||||||||+++|.|+++ |++|+|++||.|+.
T Consensus 1308 ~I~f~nVsf~Y~~~~~-~v---L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~--- 1375 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLP-LV---LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIG--- 1375 (1560)
T ss_pred eEEEEEEEEEeCCCCC-ce---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcc---
Confidence 5999999999976532 14 777999999999999999999999999999999999 99999999999987
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. +...+.|..+++|+|++.+|..++++||... ....++++.++++.+++.+++..+|+||
T Consensus 1376 ---~---------i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~--------~~~sdeeI~~Al~~a~l~~~I~~lp~Gl 1435 (1560)
T PTZ00243 1376 ---A---------YGLRELRRQFSMIPQDPVLFDGTVRQNVDPF--------LEASSAEVWAALELVGLRERVASESEGI 1435 (1560)
T ss_pred ---c---------CCHHHHHhcceEECCCCccccccHHHHhCcc--------cCCCHHHHHHHHHHCCChHHHhhCcccc
Confidence 1 2223334444445555555555666666421 1223467999999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc----------CccccCCCC---------------CceEEEEech-hhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------NCPYLSFRD---------------DKPVVVVTHG-DLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------DEPts~Ld~---------------g~tviiiTH~-~~~~ 283 (346)
+|.|+|+|. +||||||||++||||| |||||+||. ++|+|+|||+ ....
T Consensus 1436 dt~vge~G~------nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1436 DSRVLEGGS------NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred cccccCCcC------cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 999999854 8999999999999999 999999984 8999999993 3444
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
.||+|+ +|++|+|++.|+|++++.++...+
T Consensus 1510 ~~DrIl-VLd~G~VvE~Gt~~eLl~~~~~~f 1539 (1560)
T PTZ00243 1510 QYDKII-VMDHGAVAEMGSPRELVMNRQSIF 1539 (1560)
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCCCCHH
Confidence 599996 499999999999999987654433
No 125
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=299.83 Aligned_cols=199 Identities=15% Similarity=0.246 Sum_probs=154.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||+++|++... + |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (277)
T PRK13652 2 HLIETRDLCYSYSGSKE--A---LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPITKE 71 (277)
T ss_pred ceEEEEEEEEEeCCCCc--e---eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 36899999999964333 3 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.+++++|++... ++..++.+|+.++.... .......++++.++++.+++.+
T Consensus 72 ----~~~~~~~~i~~v~q~~~~~---------~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 129 (277)
T PRK13652 72 ----NIREVRKFVGLVFQNPDDQ---------IFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEE-------- 129 (277)
T ss_pred ----CHHHHHhheEEEecCcccc---------cccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh--------
Confidence 0011133567777775211 11123444444332211 1223445567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++.+.+||||||||++||||| ||||++||. |.|+|++|| +.
T Consensus 130 ---------~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 130 ---------LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 46888999999999999999999 999999983 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.++|||+++ |++|++++.|++++++..
T Consensus 201 ~~~~~drv~~-l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 201 VPEMADYIYV-MDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHhCCEEEE-EECCeEEEECCHHHHhcC
Confidence 7789999965 999999999999988764
No 126
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1e-38 Score=290.48 Aligned_cols=191 Identities=14% Similarity=0.147 Sum_probs=149.0
Q ss_pred EEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|+++||++.|+++ .. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~--i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~- 69 (220)
T cd03263 1 LQIRNLTKTYKKGTKP--A---VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIRTD- 69 (220)
T ss_pred CEEEeeEEEeCCCCce--e---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccc-
Confidence 5799999999753 22 4 677999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+... +.+|+. +..... ........+++.++++.+++.+
T Consensus 70 ----~~~~~~~i~~v~q~~~~~~~~tv~~~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 125 (220)
T cd03263 70 ----RKAARQSLGYCPQFDALFDELTVREHLR-----------FYARLK-GLPKSEIKEEVELLLRVLGLTD-------- 125 (220)
T ss_pred ----hHHHhhhEEEecCcCCccccCCHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCHH--------
Confidence 111133567777775544332 444443 321111 1122344567889999999976
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
..++++.+||+||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 126 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 196 (220)
T cd03263 126 ---------KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE 196 (220)
T ss_pred ---------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 45788999999999999999999 999999984 689999999 5677
Q ss_pred ccccEEEEEecCCeEeecCCcccc
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
++||++++ |++|++++.|+++++
T Consensus 197 ~~~d~i~~-l~~g~i~~~~~~~~~ 219 (220)
T cd03263 197 ALCDRIAI-MSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCEEEE-EECCEEEecCCHHHc
Confidence 89999965 999999999987654
No 127
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.3e-39 Score=294.93 Aligned_cols=198 Identities=16% Similarity=0.168 Sum_probs=150.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|+.+.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~~--i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ--A---LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITKLR 70 (243)
T ss_pred CeEEEeeeeecCCCcc--e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhhCC
Confidence 4889999999972222 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc-------cCCChHHHHHHHHHHHHHcCCCccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI-------RRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
.......++.++|++|+...+..+ ++.+|+.++.... ........++++.++++.+++..
T Consensus 71 -~~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 137 (243)
T TIGR02315 71 -GKKLRKLRRRIGMIFQHYNLIERL----------TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-- 137 (243)
T ss_pred -HHHHHHHHhheEEEcCCCcccccc----------cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh--
Confidence 000001133456777665444332 3444444322100 00112344567889999999976
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEE
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 276 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviii 276 (346)
..++++.+||||||||++||||| ||||++||. ++|+|++
T Consensus 138 ---------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 202 (243)
T TIGR02315 138 ---------------KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN 202 (243)
T ss_pred ---------------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 45888999999999999999999 999999984 6899999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
|| +.+.++||++++ |++|++++.|+++++
T Consensus 203 tH~~~~~~~~~d~v~~-l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 203 LHQVDLAKKYADRIVG-LKAGEIVFDGAPSEL 233 (243)
T ss_pred eCCHHHHHHhcCeEEE-EECCEEEecCCHHHh
Confidence 99 567789999965 999999999988765
No 128
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.1e-38 Score=294.53 Aligned_cols=213 Identities=18% Similarity=0.186 Sum_probs=158.4
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee----
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 144 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~---- 144 (346)
++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK---G---CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGAEL 70 (253)
T ss_pred ceEEEeeeEEEeCCce---E---eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccccccc
Confidence 4799999999997543 3 777999999999999999999999999999999999 999999999976
Q ss_pred -CCCcccccccccCCCCccceeeccccc--cc-chhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 145 -GDGTYFLQEYTIPRGSNSFSLYDTRSL--SD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 145 -i~~~~~~~~~~~~r~~i~~~~~d~~~~--~~-~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+......+.....++.++|++|+.... .. .+.+|+. +.............++++.++++.+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 139 (253)
T TIGR02323 71 ELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIG-----------ERLMAIGARHYGNIRAAAHDWLEEVEIDP 139 (253)
T ss_pred ccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHH-----------HHHHHhcccchHHHHHHHHHHHHHcCCCh
Confidence 431100000011234578888875321 11 1233332 11100000011234567889999999963
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
. .+++.+.+||||||||++||||| ||||++||. +.|+|
T Consensus 140 ~----------------~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 203 (253)
T TIGR02323 140 T----------------RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203 (253)
T ss_pred h----------------hhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2 35888999999999999999999 999999983 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+||| +.+..+||++++ |++|++++.|++++++.++.+++++.++.
T Consensus 204 ~vsH~~~~~~~~~d~~~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~l~ 250 (253)
T TIGR02323 204 IVTHDLGVARLLAQRLLV-MQQGRVVESGLTDQVLDDPQHPYTQLLVS 250 (253)
T ss_pred EEeCCHHHHHHhcCEEEE-EECCEEEEECCHHHHhcCCCCHHHHHHHH
Confidence 9999 567788999964 99999999999999988777667665553
No 129
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.2e-38 Score=297.12 Aligned_cols=213 Identities=13% Similarity=0.151 Sum_probs=159.1
Q ss_pred CCcEEEeeeEEEeCCC------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 68 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
+++|+++||+++|+.. ....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~ 73 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEA---VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELLID 73 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccce---eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEEEC
Confidence 4579999999999631 01124 777999999999999999999999999999999999 999999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccc--cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 219 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~--~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 219 (346)
|.++... .....++.++|++|+... +..+ ++.+++.+..............+++.++++.+++.
T Consensus 74 g~~~~~~----~~~~~~~~i~~v~q~~~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 139 (267)
T PRK15112 74 DHPLHFG----DYSYRSQRIRMIFQDPSTSLNPRQ----------RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139 (267)
T ss_pred CEECCCC----chhhHhccEEEEecCchhhcCcch----------hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC
Confidence 9987411 111123356777777531 1111 22333332211111112234456788999999995
Q ss_pred cccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceE
Q 019066 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 273 (346)
Q Consensus 220 ~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tv 273 (346)
+. ..++++.+||||||||++||||| ||||++||. |.||
T Consensus 140 ~~----------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tv 203 (267)
T PRK15112 140 PD----------------HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISY 203 (267)
T ss_pred hH----------------HHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEE
Confidence 32 35778899999999999999999 999999984 7899
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
|++|| +.+..+||++++ |++|++++.|++++++..+.+++.+.++
T Consensus 204 iivsH~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 250 (267)
T PRK15112 204 IYVTQHLGMMKHISDQVLV-MHQGEVVERGSTADVLASPLHELTKRLI 250 (267)
T ss_pred EEEeCCHHHHHHhcCEEEE-EECCEEEecCCHHHHhcCCCCHHHHHHH
Confidence 99999 578889999965 9999999999999998877666555444
No 130
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2e-38 Score=290.73 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=152.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~- 68 (232)
T cd03218 1 LRAENLSKRYGKRK---V---VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITKLP- 68 (232)
T ss_pred CeEEEEEEEeCCEE---e---eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccCC-
Confidence 57899999997532 4 677999999999999999999999999999999999 99999999998874110
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.....++.++|++|+...+.++ +.+|+.+ ..... ........+++.++++.+++.+
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 125 (232)
T cd03218 69 --MHKRARLGIGYLPQEASIFRKLTVEENILA-----------VLEIR-GLSKKEREEKLEELLEEFHITH--------- 125 (232)
T ss_pred --HhHHHhccEEEecCCccccccCcHHHHHHH-----------HHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 0011123467777776555443 4554433 21111 1112344567788999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 126 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 197 (232)
T cd03218 126 --------LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETL 197 (232)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 46888999999999999999999 999999984 789999999 5788
Q ss_pred ccccEEEEEecCCeEeecCCccccccC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+||++++ |++|+++..|++++++..
T Consensus 198 ~~~d~i~~-l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 198 SITDRAYI-IYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred HhCCEEEE-EECCeEEEEeCHHHhhcC
Confidence 99999965 999999999998877543
No 131
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.6e-38 Score=285.48 Aligned_cols=184 Identities=15% Similarity=0.207 Sum_probs=145.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~~--- 66 (213)
T cd03301 1 VELENVTKRFGNVT---A---LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVTD--- 66 (213)
T ss_pred CEEEeeEEEECCee---e---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc---
Confidence 57999999997643 4 777999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+... +.+|+. ++.... .......++++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~tv~~~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (213)
T cd03301 67 ---LPPKDRDIAMVFQNYALYPHMTVYDNIA-----------FGLKLR-KVPKDEIDERVREVAELLQIEH--------- 122 (213)
T ss_pred ---CCcccceEEEEecChhhccCCCHHHHHH-----------HHHHhc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 111123567777776544332 444443 321111 1123445567888999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 123 --------~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~ 194 (213)
T cd03301 123 --------LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEA 194 (213)
T ss_pred --------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999984 789999999 568
Q ss_pred hccccEEEEEecCCeEeecC
Q 019066 282 LSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g 301 (346)
..+||++++ |++|++++.|
T Consensus 195 ~~~~d~i~~-l~~g~~~~~g 213 (213)
T cd03301 195 MTMADRIAV-MNDGQIQQIG 213 (213)
T ss_pred HHhcCeEEE-EECCEEEecC
Confidence 889999965 9999999875
No 132
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-38 Score=298.97 Aligned_cols=207 Identities=17% Similarity=0.194 Sum_probs=159.2
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
.++|+++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 26 ~~~~~~~~~~~~~---i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~~~~~~ 94 (269)
T cd03294 26 SKEEILKKTGQTV---G---VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIAAMSRK 94 (269)
T ss_pred hhhhhhhhcCCce---E---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccChh
Confidence 6779999997643 3 777999999999999999999999999999999999 9999999999987521100
Q ss_pred cccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
......++.++|++|+...+..+ +.+|+. ++.... ........+++.++++.+++.+
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 152 (269)
T cd03294 95 ELRELRRKKISMVFQSFALLPHRTVLENVA-----------FGLEVQ-GVPRAEREERAAEALELVGLEG---------- 152 (269)
T ss_pred hhhhhhcCcEEEEecCcccCCCCcHHHHHH-----------HHHHhc-CCCHHHHHHHHHHHHHHcCCHh----------
Confidence 00011234577888776555333 454443 322111 1122344567889999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+.
T Consensus 153 -------~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 153 -------WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred -------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 46889999999999999999999 999999984 689999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
++||++++ |++|++++.|++++++..+.+++++.++
T Consensus 226 ~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 261 (269)
T cd03294 226 RLGDRIAI-MKDGRLVQVGTPEEILTNPANDYVREFF 261 (269)
T ss_pred HhcCEEEE-EECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence 89999965 9999999999999998877666554443
No 133
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=293.94 Aligned_cols=214 Identities=15% Similarity=0.198 Sum_probs=161.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-----CceEEECce
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 143 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-----~G~I~~~g~ 143 (346)
++|+++||+++|++.. + |+++||+|.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~~---i---l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQ---V---LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-----IVSGARLEGAVLLDNE 71 (251)
T ss_pred ceEEEEEEEEEECCee---E---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----ccccCCcccEEEECCE
Confidence 5799999999997532 4 777999999999999999999999999999999998 65 699999998
Q ss_pred eCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
++... .......++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+.
T Consensus 72 ~~~~~--~~~~~~~~~~i~~v~q~~~~~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 138 (251)
T PRK14249 72 NIYSP--NLDVVNLRKRVGMVFQQPNPFPK-----------SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138 (251)
T ss_pred Ecccc--ccChHHhhceEEEEecCCccCcC-----------cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh
Confidence 87410 00011124456777777554432 344444443221111112234456777888888864321
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH- 278 (346)
..+++++.+|||||+||++||||| ||||++||. +.|||++||
T Consensus 139 -------------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~ 205 (251)
T PRK14249 139 -------------DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHN 205 (251)
T ss_pred -------------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 135788999999999999999999 999999984 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.+.++||++++ |++|++++.|++++++..|.++++..++.
T Consensus 206 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14249 206 MQQAARASDWTGF-LLTGDLVEYGRTGEIFSRPRDKRTEDYIT 247 (251)
T ss_pred HHHHHhhCCEEEE-EeCCeEEEeCCHHHHHhCCCChHHHHHHh
Confidence 578889999965 99999999999999999988887766554
No 134
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.1e-38 Score=289.82 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=148.3
Q ss_pred cEEEeeeEEEeCCCCc-eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~-~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|++... ..+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~- 71 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA---VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVVK- 71 (218)
T ss_pred CeEEEEEEEecCCCCcccee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEccc-
Confidence 4899999999976411 024 677999999999999999999999999999999999 999999999998751
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ...++.++|++|+...+..+ +.+|+.+.. ... ........+++.++++.+++.+
T Consensus 72 -~~---~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~-----------~~~-~~~~~~~~~~~~~~l~~~~l~~------- 128 (218)
T cd03266 72 -EP---AEARRRLGFVSDSTGLYDRLTARENLEYFA-----------GLY-GLKGDELTARLEELADRLGMEE------- 128 (218)
T ss_pred -CH---HHHHhhEEEecCCcccCcCCCHHHHHHHHH-----------HHc-CCCHHHHHHHHHHHHHHcCCHH-------
Confidence 00 11134567888776555443 555554322 111 1123445678889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. +.|+|+||| +.
T Consensus 129 ----------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 129 ----------LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred ----------HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 46888999999999999999999 999999984 789999999 46
Q ss_pred hhccccEEEEEecCCeEeecC
Q 019066 281 LLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g 301 (346)
+..+||++++ |++|++++.|
T Consensus 199 ~~~~~d~i~~-l~~G~i~~~~ 218 (218)
T cd03266 199 VERLCDRVVV-LHRGRVVYEG 218 (218)
T ss_pred HHHhcCEEEE-EECCEEeecC
Confidence 8889999965 9999998754
No 135
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-39 Score=272.30 Aligned_cols=207 Identities=15% Similarity=0.124 Sum_probs=172.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|+.... |-||+|+-+.||++.++||||+|||||+|.|+-+.- |.+|+..+.|....-...
T Consensus 3 irv~~in~~yg~~q~------lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 3 IQLNGINCFYGAHQA------LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred eEEcccccccccchh------eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccccccC
Confidence 899999999987654 778999999999999999999999999999999998 999999998865431111
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
+.+ -..++.|...|+|||...+++. +|.+|+...+..-...++++...++.++|+++.|.+
T Consensus 72 ~~~---------k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~--------- 133 (242)
T COG4161 72 PSD---------KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP--------- 133 (242)
T ss_pred ccH---------HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc---------
Confidence 111 1233455666778887788876 888998887765556667888899999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
+.+++|-.|||||+|||+||||| ||||++||+ |+|-++||| +.+.
T Consensus 134 --------~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~ 205 (242)
T COG4161 134 --------YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred --------ccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHH
Confidence 67999999999999999999999 999999996 999999999 6788
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 316 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 316 (346)
+.|.+++ .|++|+|++.|++. -|.+|..+..+
T Consensus 206 k~as~vv-yme~g~ive~g~a~-~ft~p~te~f~ 237 (242)
T COG4161 206 KTASRVV-YMENGHIVEQGDAS-CFTEPQTEAFK 237 (242)
T ss_pred hhhhheE-eeecCeeEeecchh-hccCccHHHHH
Confidence 9999996 59999999999985 45666544333
No 136
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-38 Score=293.73 Aligned_cols=203 Identities=15% Similarity=0.105 Sum_probs=150.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~~~--~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~ 70 (241)
T cd03256 1 IEVENLSKTYPNGKK--A---LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINKLKG 70 (241)
T ss_pred CEEeeEEEecCCccE--E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEeccccCH
Confidence 578999999975222 4 777999999999999999999999999999999999 999999999998751100
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+..+ +.+|+.+..... ... .............+++.++++.+++.+
T Consensus 71 -~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 136 (241)
T cd03256 71 -KALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGR-RST---WRSLFGLFPKEEKQRALAALERVGLLD--------- 136 (241)
T ss_pred -hHHHHHHhccEEEcccCcccccCcHHHHHHhhhccc-chh---hhhhcccCcHHHHHHHHHHHHHcCChh---------
Confidence 00011133567777776555433 555543221000 000 000000112334567888999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 137 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 137 --------KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred --------hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCcccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
..+||++++ |++|++++.|+++++
T Consensus 209 ~~~~d~v~~-l~~G~i~~~~~~~~~ 232 (241)
T cd03256 209 REYADRIVG-LKDGRIVFDGPPAEL 232 (241)
T ss_pred HHhCCEEEE-EECCEEEeecCHHHh
Confidence 889999975 999999999988775
No 137
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=293.77 Aligned_cols=219 Identities=17% Similarity=0.228 Sum_probs=163.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
..|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++...
T Consensus 3 ~~l~~~nl~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGKNH---A---VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCCee---E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 3589999999997532 4 777999999999999999999999999999999985111113689999999987411
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ......++.++|++|+...+..+ +.+|+. ++............++++.++++.+++...+.
T Consensus 77 ~--~~~~~~~~~i~~~~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 139 (252)
T PRK14256 77 G--VDPVSIRRRVGMVFQKPNPFPAMSIYDNVI-----------AGYKLNGRVNRSEADEIVESSLKRVALWDEVK---- 139 (252)
T ss_pred c--CChHHhhccEEEEecCCCCCCcCcHHHHHH-----------hHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh----
Confidence 0 01111244577888876555433 555543 22211111122344567888999999864221
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++.+.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 140 ---------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~ 210 (252)
T PRK14256 140 ---------DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQA 210 (252)
T ss_pred ---------HHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHH
Confidence 134678999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++|++++.|++++++..+.+++++.++.
T Consensus 211 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 248 (252)
T PRK14256 211 ARVSDYTAF-FYMGDLVECGETKKIFTTPEKKQTEDYIT 248 (252)
T ss_pred HhhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHHHh
Confidence 889999965 99999999999999999888888776654
No 138
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=296.89 Aligned_cols=219 Identities=16% Similarity=0.230 Sum_probs=162.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|+++|+++..
T Consensus 17 ~~~l~~~nl~~~~~~~~---i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQ---A---LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECCEE---E---EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 56899999999997532 3 77799999999999999999999999999999999710000389999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.. ......++.++|++|+...+...+.+|+.+ +...... ......++++.++++.+++.+.+.
T Consensus 91 ~~--~~~~~~~~~i~~v~q~~~~~~~tv~enl~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 154 (267)
T PRK14235 91 PR--LDVVELRARVGMVFQKPNPFPKSIYENVAY-----------GPRIHGLARSKAELDEIVETSLRKAGLWEEVK--- 154 (267)
T ss_pred cc--cchHHHhhceEEEecCCCCCCCcHHHHHHH-----------HHHhcccccchHHHHHHHHHHHHHcCCchhhh---
Confidence 10 001112345678888765543345555433 2211110 112344567889999999964210
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
+.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.
T Consensus 155 ----------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~ 224 (267)
T PRK14235 155 ----------DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQ 224 (267)
T ss_pred ----------HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHH
Confidence 034778999999999999999999 999999984 689999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+..+||++++ |++|++++.|++++++.++.++.++.++
T Consensus 225 ~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 262 (267)
T PRK14235 225 AARVSQRTAF-FHLGNLVEVGDTEKMFTNPDDPRTQDYI 262 (267)
T ss_pred HHhhCCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHh
Confidence 8889999965 9999999999999998777666555443
No 139
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=295.88 Aligned_cols=219 Identities=16% Similarity=0.186 Sum_probs=161.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~~~~---i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 18 EIALSTKDLHVYYGKKE---A---IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred CeEEEEeeEEEEECCee---e---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc
Confidence 45799999999996532 4 77799999999999999999999999999999998611001479999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+. +|+.++............++++.++++.+++.+.+.
T Consensus 92 ~--~~~~~~~~~~i~~v~q~~~~~~~tv~-----------eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~---- 154 (267)
T PRK14237 92 K--EINVYEMRKHIGMVFQRPNPFAKSIY-----------ENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK---- 154 (267)
T ss_pred c--cCChHHHhcceEEEecCCccccccHH-----------HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh----
Confidence 0 00011124456777777544433344 444433211111123345577888999999864220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 155 ---------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~ 225 (267)
T PRK14237 155 ---------DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQA 225 (267)
T ss_pred ---------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+||++++ |++|++++.|++++++..+.+.++..++
T Consensus 226 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 262 (267)
T PRK14237 226 ARASDYTAF-FYLGDLIEYDKTRNIFTNPKLQSTNDYV 262 (267)
T ss_pred HHhcCEEEE-EECCEEEEeCCHHHHhcCCCcHHHHHhh
Confidence 889999975 9999999999999998877665554443
No 140
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-39 Score=310.05 Aligned_cols=220 Identities=10% Similarity=0.135 Sum_probs=185.7
Q ss_pred hHHHHHHhhhhhhhhccC---------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 50 DAVFREVLQSYDQLRTRI---------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+.++..+..+.+..+.+ ...+.|++|+|.|....++ |+++||++++|+++|++||||+||||+++
T Consensus 233 me~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~i-----L~~isf~i~~g~tvAiVg~SG~gKsTI~r 307 (497)
T COG5265 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPI-----LNGISFTIPLGKTVAIVGESGAGKSTILR 307 (497)
T ss_pred HHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchh-----hcCccccccCccEEEEEeCCCCcHHHHHH
Confidence 345666666666554431 1238899999999877654 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|.++|+ +++|.|.+||+|++ ..+.+..+..+++|+|+..++..++..|+.++-.
T Consensus 308 llfRFyD-----~~sG~I~id~qdir---------------~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~----- 362 (497)
T COG5265 308 LLFRFYD-----VNSGSITIDGQDIR---------------DVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP----- 362 (497)
T ss_pred HHHHHhC-----CcCceEEEcchhHH---------------HhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-----
Confidence 9999999 99999999999987 3445555666777777777777888888887543
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
....+.+..+++...+++++..+|+||+|.|||+|+ .|||||||||+|||++ ||.||+||.
T Consensus 363 --~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl------klSggekqrvaiar~ilk~p~il~~deatsaldt~t 434 (497)
T COG5265 363 --DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL------KLSGGEKQRVAIARTILKNPPILILDEATSALDTHT 434 (497)
T ss_pred --cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee------eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhH
Confidence 345677888999999999999999999999999987 8999999999999998 999999983
Q ss_pred -------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|.|.++|.| ..+.. ||.|+| |++|+|+|.|+|++++..
T Consensus 435 e~~iq~~l~~~~~~rttlviahrlsti~~-adeiiv-l~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 435 EQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIV-LDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEE-eeCCEEEecCcHHHHHHc
Confidence 999999999 34555 999965 999999999999999887
No 141
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-38 Score=298.05 Aligned_cols=201 Identities=14% Similarity=0.217 Sum_probs=155.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++... + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~- 69 (275)
T PRK13639 1 ILETRDLKYSYPDGTE--A---LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIKYD- 69 (275)
T ss_pred CEEEEEEEEEeCCCCe--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECccc-
Confidence 4899999999964332 4 777999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|++.. .++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 -~~~~~~~~~~i~~v~q~~~~---------~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~--------- 129 (275)
T PRK13639 70 -KKSLLEVRKTVGIVFQNPDD---------QLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEG--------- 129 (275)
T ss_pred -cchHHHHHhheEEEeeChhh---------hhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch---------
Confidence 00001113456777777521 111224445554432211 1223445577889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
+.++++.+|||||+||++||||| ||||++||. |.|||++|| +.+.
T Consensus 130 --------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~ 201 (275)
T PRK13639 130 --------FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVP 201 (275)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 56889999999999999999999 999999984 789999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++||++++ |++|++++.|++++++..+
T Consensus 202 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 228 (275)
T PRK13639 202 VYADKVYV-MSDGKIIKEGTPKEVFSDI 228 (275)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHhcCh
Confidence 89999975 9999999999999887654
No 142
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=293.74 Aligned_cols=219 Identities=17% Similarity=0.190 Sum_probs=163.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+++||+|++||+++|+|+||||||||+++|+|++++.+..|++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQ---A---LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECCee---e---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 46799999999997532 4 77799999999999999999999999999999998711101278999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+.+|+.+ +............++++.++++.+++.+.+.
T Consensus 76 ~--~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 138 (251)
T PRK14270 76 K--DVDVVELRKRVGMVFQKPNPFPMSIYDNVAY-----------GPRIHGIKDKKELDKIVEWALKKAALWDEVK---- 138 (251)
T ss_pred c--cccHHHHHhheEEEecCCCcCCCcHHHHHHh-----------HHHhcCCCcHHHHHHHHHHHHHHcCCchhhh----
Confidence 1 0011112345678888765544335555433 2211111112344567788999999854210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
...++++.+||+|||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 139 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~ 209 (251)
T PRK14270 139 ---------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQA 209 (251)
T ss_pred ---------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHH
Confidence 035778999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+|||+++ |++|++++.|++++++..+.++.++.++
T Consensus 210 ~~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PRK14270 210 SRVSDYTAF-FLMGDLIEFNKTEKIFLEPQKKETEDYI 246 (251)
T ss_pred HHhcCEEEE-EECCeEEEeCCHHHHhcCCCChHHHHhh
Confidence 889999965 9999999999999999888887766554
No 143
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=294.43 Aligned_cols=217 Identities=18% Similarity=0.259 Sum_probs=159.0
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGSNH---V---IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCCee---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 4799999999997532 4 777999999999999999999999999999999998110002499999999987410
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
... . ...++.++|++|+...+... +.+|+.+ +...... .......+++.++++.+++...+.
T Consensus 77 ~~~-~-~~~~~~i~~~~q~~~~~~~~tv~enl~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 140 (253)
T PRK14267 77 DVD-P-IEVRREVGMVFQYPNPFPHLTIYDNVAI-----------GVKLNGLVKSKKELDERVEWALKKAALWDEVK--- 140 (253)
T ss_pred ccC-h-HHHhhceeEEecCCccCCCCcHHHHHHH-----------HHHhcCccCCHHHHHHHHHHHHHHcCCccchh---
Confidence 000 0 01134567777776555443 5555433 2111100 122344567888999999864220
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.
T Consensus 141 ----------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 210 (253)
T PRK14267 141 ----------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ 210 (253)
T ss_pred ----------hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 035788999999999999999999 999999984 689999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+..+||++++ |++|++++.|++++++..+.++....+
T Consensus 211 ~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 247 (253)
T PRK14267 211 AARVSDYVAF-LYLGKLIEVGPTRKVFENPEHELTEKY 247 (253)
T ss_pred HHhhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHH
Confidence 7889999965 999999999999998877655444433
No 144
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-38 Score=292.73 Aligned_cols=217 Identities=17% Similarity=0.186 Sum_probs=160.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++..+..+++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGDFQ---A---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECCce---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 589999999997542 4 7779999999999999999999999999999999761111127899999999875100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. .....++.++|++|+...+...+.+|+ .++............++++.++++.+++.+.+.
T Consensus 77 -~-~~~~~~~~i~~~~q~~~~~~~t~~~ni-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------ 137 (250)
T PRK14240 77 -I-DVNQLRKRVGMVFQQPNPFPMSIYDNV-----------AYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK------ 137 (250)
T ss_pred -c-chHHHhccEEEEecCCccCcccHHHHH-----------HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH------
Confidence 0 011124456777777544432244444 332211111122345677888899998854220
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 138 -------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 210 (250)
T PRK14240 138 -------DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASR 210 (250)
T ss_pred -------HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHh
Confidence 135788999999999999999999 999999984 789999999 56888
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+||++++ |++|++++.|++++++..+.++++..++
T Consensus 211 ~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14240 211 ISDKTAF-FLNGEIVEFGDTVDLFTNPKDKRTEDYI 245 (250)
T ss_pred hCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHhh
Confidence 9999965 9999999999999998888777765543
No 145
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-38 Score=299.24 Aligned_cols=205 Identities=16% Similarity=0.205 Sum_probs=154.8
Q ss_pred cEEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||++.|++.. ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG---LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 489999999997421 0114 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
..........++.++|++|++.. .++..++.+|+.++.... ........+++.++++.+++...
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------ 137 (287)
T PRK13641 74 ETGNKNLKKLRKKVSLVFQFPEA---------QLFENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSED------ 137 (287)
T ss_pred ccccchHHHHHhceEEEEeChhh---------hhccchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh------
Confidence 10000011113356677776420 112224555555433211 12234556778999999999731
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 138 ----------~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~ 207 (287)
T PRK13641 138 ----------LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207 (287)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 46889999999999999999999 999999984 789999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.++||++++ |++|++++.|++++++..
T Consensus 208 ~~~~~d~v~~-l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 208 VAEYADDVLV-LEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 8899999965 999999999999887654
No 146
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=292.57 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=153.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++. . + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~-~--~---l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 71 (241)
T PRK10895 3 TLTAKNLAKAYKGR-R--V---VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISLLP 71 (241)
T ss_pred eEEEeCcEEEeCCE-E--E---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCC
Confidence 69999999999753 2 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+..+ +.+|+ .+.............+.++.++++.+++.+
T Consensus 72 ---~~~~~~~~i~~~~q~~~~~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 129 (241)
T PRK10895 72 ---LHARARRGIGYLPQEASIFRRLSVYDNL-----------MAVLQIRDDLSAEQREDRANELMEEFHIEH-------- 129 (241)
T ss_pred ---HHHHHHhCeEEeccCCcccccCcHHHHH-----------hhhhhcccccCHHHHHHHHHHHHHHcCCHH--------
Confidence 0011234567777775544432 44444 332111111122344567889999999976
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. |.|+|++|| +.+
T Consensus 130 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~ 200 (241)
T PRK10895 130 ---------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRET 200 (241)
T ss_pred ---------HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH
Confidence 45788999999999999999999 999999984 889999999 468
Q ss_pred hccccEEEEEecCCeEeecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
..+||++++ |++|++++.|++++++..
T Consensus 201 ~~~~d~v~~-l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 201 LAVCERAYI-VSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHhcCEEEE-EeCCeEEeeCCHHHHhcC
Confidence 899999965 999999999999887653
No 147
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=294.58 Aligned_cols=216 Identities=18% Similarity=0.201 Sum_probs=159.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|++++.+..|++|+|.++|+++....
T Consensus 4 ~l~i~~v~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGSFH---A---VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECCEe---e---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 689999999997532 4 7779999999999999999999999999999999972111137999999999874110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .....++.++|++|+...+... +.+|+.+ +............++++.++++.+++.+.+.
T Consensus 78 ~--~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 139 (258)
T PRK14241 78 V--DPVAVRRTIGMVFQRPNPFPTMSIRDNVVA-----------GLKLNGVRNKKDLDELVEKSLRGANLWNEVK----- 139 (258)
T ss_pred c--ChHHHhcceEEEccccccCCCCcHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-----
Confidence 0 0111234577888776555433 5555433 2111111123445667888999999853210
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
...++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 140 --------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~ 211 (258)
T PRK14241 140 --------DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAA 211 (258)
T ss_pred --------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 135788999999999999999999 999999984 689999999 5678
Q ss_pred ccccEEEEEec------CCeEeecCCccccccCCCCCChHHH
Q 019066 283 SLTDRARIRTY------LGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 283 ~~aDri~v~l~------~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
.+||++++ |+ +|+|++.|++++++..+.+++++.+
T Consensus 212 ~~~d~i~~-l~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 252 (258)
T PRK14241 212 RVSDQTAF-FNLEATGKPGRLVEIDDTEKIFSNPTQKATEDY 252 (258)
T ss_pred HhCCEEEE-EecccCCCCceEEecCCHHHHHhCcCcHHHHHH
Confidence 89999965 85 8999999999999877665555443
No 148
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=297.06 Aligned_cols=200 Identities=12% Similarity=0.144 Sum_probs=152.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~~~~~~---i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~- 68 (271)
T PRK13638 1 MLATSDLWFRYQDEP---V---LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLDYS- 68 (271)
T ss_pred CeEEEEEEEEcCCcc---c---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcccc-
Confidence 589999999997533 3 777999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ......++.++|++|+...+. +..++.+|+.+..... ........+++.++++.+++.+
T Consensus 69 ~-~~~~~~~~~i~~v~q~~~~~~---------~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 128 (271)
T PRK13638 69 K-RGLLALRQQVATVFQDPEQQI---------FYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQH--------- 128 (271)
T ss_pred c-CCHHHHHhheEEEeeChhhcc---------ccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 0 001112345677777753211 1112334443322111 1123344567888999999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.+.
T Consensus 129 --------~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 129 --------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred --------HhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeEeecCCccccccCC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
.+||++++ |++|++++.|++++++..+
T Consensus 201 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 201 EISDAVYV-LRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHhcCh
Confidence 89999975 9999999999998876643
No 149
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-38 Score=297.02 Aligned_cols=218 Identities=19% Similarity=0.256 Sum_probs=160.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 37 ~~~l~i~~l~~~~~~~~---i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQ---A---LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEECCEe---e---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 56899999999997532 4 77799999999999999999999999999999998610000489999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
... .....++.++|++|+...+...+.+|+. +...... .. ....+++.++++.+++...+.
T Consensus 111 ~~~--~~~~~~~~i~~v~q~~~l~~~tv~enl~-----------~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~i~---- 171 (285)
T PRK14254 111 ADV--DPVALRRRIGMVFQKPNPFPKSIYDNVA-----------YGLKIQG-YD-GDIDERVEESLRRAALWDEVK---- 171 (285)
T ss_pred ccc--chHhhhccEEEEecCCccCcCCHHHHHH-----------HHHHHcC-Cc-HHHHHHHHHHHHHcCCCchhH----
Confidence 100 0111234567777776544333444443 3221111 11 234567889999999864220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 172 ---------~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i 242 (285)
T PRK14254 172 ---------DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQA 242 (285)
T ss_pred ---------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 679999999 577
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+|||++++|++|+|++.|++++++..+.+++++.++
T Consensus 243 ~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 280 (285)
T PRK14254 243 ARISDKTAVFLTGGELVEFDDTDKIFENPESQRVEDYI 280 (285)
T ss_pred HhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHHHHHHh
Confidence 88999975557999999999999988777766655544
No 150
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.9e-38 Score=288.84 Aligned_cols=193 Identities=16% Similarity=0.193 Sum_probs=147.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 68 (222)
T cd03224 1 LEVENLNAGYGKSQ---I---LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITGLP- 68 (222)
T ss_pred CEEeeEEeecCCee---E---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCCCC-
Confidence 57999999997532 4 777999999999999999999999999999999999 99999999998875111
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHc-CCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~ 229 (346)
.....++.++|++|+...+..+ ++.+|+.++..... .....+++.++++.+ ++.+
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~----------t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~--------- 124 (222)
T cd03224 69 --PHERARAGIGYVPEGRRIFPEL----------TVEENLLLGAYARR---RAKRKARLERVYELFPRLKE--------- 124 (222)
T ss_pred --HHHHHhcCeEEeccccccCCCC----------cHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhh---------
Confidence 0111234567777776544432 33344433221111 122345566778877 4655
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 125 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 196 (222)
T cd03224 125 --------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFAL 196 (222)
T ss_pred --------hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCcccccc
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
++||++++ |++|++++.|++++++.
T Consensus 197 ~~~d~i~~-l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 197 EIADRAYV-LERGRVVLEGTAAELLA 221 (222)
T ss_pred HhccEEEE-eeCCeEEEeCCHHHHhc
Confidence 99999965 99999999998876643
No 151
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-38 Score=296.08 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=153.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++....
T Consensus 1 ml~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 70 (274)
T PRK13644 1 MIRLENVSYSYPDGTP--A---LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGDFS 70 (274)
T ss_pred CEEEEEEEEEcCCCCc--e---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCccc
Confidence 5899999999964333 3 777999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCCccceeecccc-cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~-~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|++.. +. ..++.+|+.++.... ........+++.++++.+++.+
T Consensus 71 ---~~~~~~~~i~~v~q~~~~~~~----------~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 128 (274)
T PRK13644 71 ---KLQGIRKLVGIVFQNPETQFV----------GRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEK-------- 128 (274)
T ss_pred ---cHHHHHhheEEEEEChhhhcc----------cchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH--------
Confidence 001113356677776531 21 224445554432211 1223455677889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. |.|+|++|| +.+
T Consensus 129 ---------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~ 199 (274)
T PRK13644 129 ---------YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL 199 (274)
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 46888999999999999999999 999999984 899999999 455
Q ss_pred hccccEEEEEecCCeEeecCCccccccCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
..||++++ |++|++++.|++++++..+
T Consensus 200 -~~~d~v~~-l~~G~i~~~g~~~~~~~~~ 226 (274)
T PRK13644 200 -HDADRIIV-MDRGKIVLEGEPENVLSDV 226 (274)
T ss_pred -hhCCEEEE-EECCEEEEECCHHHHhcCh
Confidence 56999965 9999999999999887654
No 152
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-38 Score=294.99 Aligned_cols=218 Identities=17% Similarity=0.207 Sum_probs=160.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 11 ~~~l~i~nl~~~~~~~~---i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGTFE---A---VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECCEE---E---EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45799999999997532 4 66699999999999999999999999999999998611111489999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . .....++.++|++|+... +..++.+|+.+....... . ...++++.++++.+++...+.
T Consensus 85 ~~-~-~~~~~~~~i~~v~q~~~l-----------~~~tv~enl~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~l~---- 145 (269)
T PRK14259 85 PR-V-DPVEVRRRIGMVFQQPNP-----------FPKSIYENIAFGARINGY-T-GDMDELVERSLRKAAVWDECK---- 145 (269)
T ss_pred cc-C-CHHHHhhceEEEccCCcc-----------chhhHHHHHhhhhhhcCC-c-HHHHHHHHHHHHHhCCcchhh----
Confidence 00 0 000112345666665433 333555666554321111 1 233456778889888753210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 146 ---------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~ 216 (269)
T PRK14259 146 ---------DKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQA 216 (269)
T ss_pred ---------hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 689999999 578
Q ss_pred hccccEEEEEecC-----------CeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYL-----------GELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~-----------G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++ |++++.|++++++..+.+++++.++.
T Consensus 217 ~~~~d~i~~-l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
T PRK14259 217 VRVSDMTAF-FNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYIS 265 (269)
T ss_pred HHhcCEEEE-EeccccccccccccceEEEeCCHHHHHhCcCChHHHHHHh
Confidence 899999965 986 67999999999999888877665554
No 153
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-38 Score=291.96 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=161.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++|++++|+... + |+++||+|++||+++|+|+||||||||+++|+|++++.+..|++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~---~---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGNYE---A---LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECCee---e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 4699999999997532 4 777999999999999999999999999999999986111113799999999987410
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. ......++.+++++|+...+...+.+|+.+ +............++++.++++.+++....
T Consensus 77 ~--~~~~~~~~~i~~~~q~~~~~~~tv~enl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 137 (251)
T PRK14251 77 K--MDLVELRKEVGMVFQQPTPFPFSVYDNVAY-----------GLKIAGVKDKELIDQRVEESLKQAAIWKET------ 137 (251)
T ss_pred c--chHHHhhccEEEEecCCccCCCcHHHHHHH-----------HHHHcCCCCHHHHHHHHHHHHHHcCCCcch------
Confidence 0 011112445678887765443335555433 211111111223446678889999985311
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
...+++.+.+|||||+||++||||| ||||++||. +.|+|+||| +.+.
T Consensus 138 -------~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~ 210 (251)
T PRK14251 138 -------KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210 (251)
T ss_pred -------HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence 0035778899999999999999999 999999984 789999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
++||++++ |++|++++.|++++++..+.+.+++.++.
T Consensus 211 ~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14251 211 RISDQTAF-LMNGDLIEAGPTEEMFIAPKKQITSDYLN 247 (251)
T ss_pred hhcCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHHh
Confidence 89999964 99999999999999988887776665554
No 154
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.7e-38 Score=289.43 Aligned_cols=193 Identities=13% Similarity=0.178 Sum_probs=150.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~~~- 68 (236)
T TIGR03864 1 ALEVAGLSFAYGARR---A---LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLRRA- 68 (236)
T ss_pred CEEEEeeEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcccC-
Confidence 489999999997532 4 777999999999999999999999999999999999 9999999999887411
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. . ..++.++|++|+...+..+ +.+|+.+. .... ........+++.++++.+|+.+
T Consensus 69 -~-~--~~~~~i~~~~q~~~~~~~~t~~~~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 124 (236)
T TIGR03864 69 -P-R--AALARLGVVFQQPTLDLDLSVRQNLRYH-----------AALH-GLSRAEARERIAALLARLGLAE-------- 124 (236)
T ss_pred -C-h--hhhhhEEEeCCCCCCcccCcHHHHHHHH-----------HHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 0 0 1123567777775543332 44444332 1111 1122334567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
.+++.+.+|||||+||++||||| ||||++||. |.|+|++|| +.
T Consensus 125 ---------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 125 ---------RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 45888999999999999999999 999999984 689999999 45
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+. .||++++ |++|++++.|++++++..
T Consensus 196 ~~-~~d~i~~-l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 196 IE-ADDRLVV-LHRGRVLADGAAAELRGA 222 (236)
T ss_pred Hh-hCCEEEE-EeCCeEEEeCCHHHHHHH
Confidence 65 4999965 999999999999888754
No 155
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-38 Score=284.39 Aligned_cols=199 Identities=14% Similarity=0.173 Sum_probs=155.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+..|+. .++ |++|||++++||+++|+|+||+|||||+|+|+|+.+ +.+|+|.++|+|+.
T Consensus 2 ~mL~v~~l~~~YG~---~~~---L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit-- 68 (237)
T COG0410 2 PMLEVENLSAGYGK---IQA---LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDIT-- 68 (237)
T ss_pred CceeEEeEeecccc---eeE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecC--
Confidence 57999999999987 345 666999999999999999999999999999999999 99999999999997
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcC-CCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~ 227 (346)
....+...+..++|++|..+.|..+ +|.+|+..+...... +...+...+++.+.+= |.+
T Consensus 69 -~~p~~~r~r~Gi~~VPegR~iF~~L----------TVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lke------- 128 (237)
T COG0410 69 -GLPPHERARLGIAYVPEGRRIFPRL----------TVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKE------- 128 (237)
T ss_pred -CCCHHHHHhCCeEeCcccccchhhC----------cHHHHHhhhhhcccc--cccccccHHHHHHHChhHHH-------
Confidence 2234445567788888887766555 444444444321111 0111111344444431 222
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..+++..+|||||||.++||||| ||||.+|.+ |.||++|.+ +
T Consensus 129 ----------r~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 129 ----------RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred ----------HhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 46899999999999999999999 999999754 779999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
.+.++|||.+| |..|+|+.+|+.+++..+|.
T Consensus 199 ~Al~iaDr~yv-le~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 199 FALEIADRGYV-LENGRIVLSGTAAELLADPD 229 (237)
T ss_pred HHHHhhCEEEE-EeCCEEEEecCHHHHhcCHH
Confidence 89999999975 99999999999999987754
No 156
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-38 Score=290.64 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=160.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGENQ---A---LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECCee---e---eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 689999999997532 4 7779999999999999999999999999999999982111125899999998863100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.....++.++|++|+...+...+.+|+. ++............++++.++++.+++.+.+.
T Consensus 77 ---~~~~~~~~i~~~~q~~~~~~~tv~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 136 (249)
T PRK14253 77 ---DVADLRIKVGMVFQKPNPFPMSIYENVA-----------YGLRAQGIKDKKVLDEVVERSLRGAALWDEVK------ 136 (249)
T ss_pred ---chHHHHhheeEEecCCCcCcccHHHHHH-----------hHHHhcCCCchHHHHHHHHHHHHHcCCchhhh------
Confidence 0111234567888776555433555443 32111111112334566778889998864321
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
+.+++++.+|||||+||++||||| ||||++||. +.|||++|| +.+..
T Consensus 137 -------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 209 (249)
T PRK14253 137 -------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARR 209 (249)
T ss_pred -------HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHH
Confidence 135788999999999999999999 999999984 789999999 57888
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+|||+++ |++|++++.|+++++...+.+++++.++.
T Consensus 210 ~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (249)
T PRK14253 210 ISDRTAF-FLMGELVEHDDTQVIFSNPKDDRTQGYVN 245 (249)
T ss_pred hCCEEEE-EECCEEEEeCCHHHHHcCCCChHHHHHhh
Confidence 9999975 99999999999999988777777665543
No 157
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-38 Score=286.30 Aligned_cols=186 Identities=18% Similarity=0.232 Sum_probs=146.2
Q ss_pred EEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|+++|++++|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 70 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA---LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVTG-- 70 (220)
T ss_pred CeEEEEEEEcCCCCcceEE---EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc--
Confidence 57899999997521 0124 677999999999999999999999999999999999 999999999988741
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.++.++|++|+...+..+ +.+|+.+. .... ........+++.++++.+++.+
T Consensus 71 -------~~~~i~~v~q~~~~~~~~tv~e~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 123 (220)
T cd03293 71 -------PGPDRGYVFQQDALLPWLTVLDNVALG-----------LELQ-GVPKAEARERAEELLELVGLSG-------- 123 (220)
T ss_pred -------ccCcEEEEecccccccCCCHHHHHHHH-----------HHHc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 133567777776554432 55554332 1111 1122344567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++.+.+||||||||++||||| ||||++||. +.|+|++|| +.
T Consensus 124 ---------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 194 (220)
T cd03293 124 ---------FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194 (220)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 45888999999999999999999 999999984 689999999 46
Q ss_pred hhccccEEEEEec--CCeEeecCCc
Q 019066 281 LLSLTDRARIRTY--LGELLGIPPA 303 (346)
Q Consensus 281 ~~~~aDri~v~l~--~G~iv~~g~~ 303 (346)
+..+||++++ |+ +|++++.++.
T Consensus 195 ~~~~~d~i~~-l~~~~G~i~~~~~~ 218 (220)
T cd03293 195 AVFLADRVVV-LSARPGRIVAEVEV 218 (220)
T ss_pred HHHhCCEEEE-EECCCCEEEEEEEe
Confidence 7889999975 98 7999988765
No 158
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-38 Score=290.17 Aligned_cols=198 Identities=14% Similarity=0.095 Sum_probs=152.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (242)
T PRK11124 2 SIQLNGINCFYGAHQ---A---LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSK 70 (242)
T ss_pred EEEEEeeEEEECCee---e---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccccc
Confidence 489999999997533 3 777999999999999999999999999999999999 99999999999863100
Q ss_pred cccc--cccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 150 FLQE--YTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 150 ~~~~--~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.... ....++.++|++|+...+.++ +.+|+.++... ..........+++.++++.+|+..
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~-----------~~~~~~~~~~~~~~~~l~~~gl~~------ 133 (242)
T PRK11124 71 TPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCR-----------VLGLSKDQALARAEKLLERLRLKP------ 133 (242)
T ss_pred ccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHH-----------HcCCCHHHHHHHHHHHHHHcCChh------
Confidence 0000 011234567788776655443 55554322110 001112334567889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
.+++++.+||||||||++||||| ||||++||. ++|+|++|| +
T Consensus 134 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 134 -----------YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 46888999999999999999999 999999984 799999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
.+..+||++++ |++|++++.|+++++.
T Consensus 203 ~~~~~~d~i~~-l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 203 VARKTASRVVY-MENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHhcCEEEE-EECCEEEEeCCHHHhc
Confidence 67788999965 9999999999987753
No 159
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.3e-38 Score=325.11 Aligned_cols=205 Identities=16% Similarity=0.168 Sum_probs=157.3
Q ss_pred hhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
..+++.++++.+++.... ....|+++||+|+|+++.. .+ |+|+||+|++||+++|+||||||||||+|+|
T Consensus 293 ~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~-~i---l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll 368 (529)
T TIGR02857 293 AAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRA-PA---LRPVSFTVPPGERVALVGPSGAGKSTLLNLL 368 (529)
T ss_pred HHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCc-cc---ccceeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 345667777543221111 1135999999999976431 14 7779999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.+||.++. + +...+.+...++|+|++.++..++++|+.++..
T Consensus 369 ~g~~~-----~~~G~I~~~g~~i~------~---------~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~------- 421 (529)
T TIGR02857 369 LGFVD-----PTEGSIAVNGVPLA------D---------ADADSWRDQIAWVPQHPFLFAGTIAENIRLARP------- 421 (529)
T ss_pred hcCCC-----CCCcEEEECCEehh------h---------CCHHHHHhheEEEcCCCcccCcCHHHHHhccCC-------
Confidence 99999 99999999999986 1 112223333444455555555566677665421
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
...++++.++++.+++.+++.++|+||+|+|+|+| .+||||||||++||||| |||||+||+
T Consensus 422 ~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g------~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~ 495 (529)
T TIGR02857 422 DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGG------AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495 (529)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCcccccchhcccc------ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 12346788999999999999999999999999985 48999999999999999 999999984
Q ss_pred -----------CceEEEEec-hhhhccccEEEE
Q 019066 270 -----------DKPVVVVTH-GDLLSLTDRARI 290 (346)
Q Consensus 270 -----------g~tviiiTH-~~~~~~aDri~v 290 (346)
++|+|+||| -...+.||+|++
T Consensus 496 ~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 496 LVTEALRALAQGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEe
Confidence 799999999 344467999953
No 160
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-38 Score=295.63 Aligned_cols=199 Identities=16% Similarity=0.210 Sum_probs=154.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~~~~-~~---l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 3 EEIIRVEHISFRYPDAAT-YA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLSE 73 (279)
T ss_pred CceEEEEEEEEEeCCCCc-cc---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 357999999999964321 14 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. .... .++.++|++|++. .+ +..++.+|+.++.... .....+.++++.++++.++|.+
T Consensus 74 ~---~~~~-~~~~i~~~~q~~~~~~----------~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 132 (279)
T PRK13635 74 E---TVWD-VRRQVGMVFQNPDNQF----------VGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMED------ 132 (279)
T ss_pred C---cHHH-HhhheEEEEeCHHHhc----------ccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChh------
Confidence 1 0011 1334667776642 22 1225556655443221 1223455678899999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 133 -----------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 133 -----------FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 46889999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+. .||++++ |++|++++.|++++++..
T Consensus 202 ~~~~-~~d~i~~-l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 202 DEAA-QADRVIV-MNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHH-cCCEEEE-EECCEEEEECCHHHHhcC
Confidence 4565 5999975 999999999999887654
No 161
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-38 Score=291.19 Aligned_cols=220 Identities=20% Similarity=0.227 Sum_probs=161.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++..+..+++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGEKH---A---LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECCee---e---eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 45799999999997543 3 77799999999999999999999999999999997511101258999999998752
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+.+| +.++............++++.++++.+++.+.+.
T Consensus 78 ~~--~~~~~~~~~i~~~~q~~~~~~~tv~en-----------i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 140 (253)
T PRK14261 78 SG--ADVVALRRKIGMVFQRPNPFPKSIYEN-----------VAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK---- 140 (253)
T ss_pred cc--cchhhhhceEEEEecCCccCcccHHHH-----------HHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH----
Confidence 10 001112345677777765443334444 4433221111112344567788899988854221
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 141 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~ 211 (253)
T PRK14261 141 ---------DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA 211 (253)
T ss_pred ---------HHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH
Confidence 125788999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++|++++.|++++++.++.++.++.++.
T Consensus 212 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 249 (253)
T PRK14261 212 ARVSDYTGF-MYLGKLIEFDKTTQIFENPHEELTENYIT 249 (253)
T ss_pred HhhCCEEEE-EECCEEEEcCCHHHHHhCCCcHHHHHHhc
Confidence 789999975 99999999999999988877766665553
No 162
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=7.5e-38 Score=298.45 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=157.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+++++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~---~---l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~-- 68 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN---A---LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQ-- 68 (301)
T ss_pred EEEEEEEEEEECCEE---E---EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc--
Confidence 389999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+.++ +.+|+.++.. .. ..+..+..+++.++++.+++.+
T Consensus 69 ---~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~-----------~~-~~~~~~~~~~~~~~l~~~gl~~-------- 125 (301)
T TIGR03522 69 ---NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG-----------IY-GMKGQLLKQRVEEMIELVGLRP-------- 125 (301)
T ss_pred ---ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHH-----------Hc-CCCHHHHHHHHHHHHHHCCCch--------
Confidence 0111234678888887666554 6666544321 11 1123445567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
.+++++..||||||||++||||| ||||++||. ++|||++|| +++.
T Consensus 126 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 126 ---------EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred ---------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 56888999999999999999999 999999984 789999999 5788
Q ss_pred ccccEEEEEecCCeEeecCCccccccC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|||+++ |++|+++..|+++++...
T Consensus 197 ~~~d~i~~-l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 197 AICDRVII-INKGKIVADKKLDELSAA 222 (301)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHHHh
Confidence 99999975 999999999999988553
No 163
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.9e-38 Score=288.72 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=156.4
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++|+++.|++. . + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~~i~~~~l~~~~~~~-~--~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 69 (242)
T TIGR03411 1 PILYLEGLSVSFDGF-K--A---LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTGL 69 (242)
T ss_pred CeEEEEeeEEEcCCe-E--E---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCCC
Confidence 368999999999753 2 4 777999999999999999999999999999999999 9999999999887411
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....++.++|++|+...+.++ +.+|+.+.... ...+ +.. .........++++.++++.+++.+
T Consensus 70 ~---~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~-~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~l~~------- 135 (242)
T TIGR03411 70 P---EHQIARAGIGRKFQKPTVFENLTVFENLELALPR-DKSV-FAS--LFFRLSAEEKDRIEEVLETIGLAD------- 135 (242)
T ss_pred C---HHHHHhcCeeEeccccccCCCCCHHHHHHHhhhc-cccc-ccc--cccccHHHHHHHHHHHHHHcCCch-------
Confidence 0 1111234577888887666654 66665442210 0000 000 000112344567889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 136 ----------~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 205 (242)
T TIGR03411 136 ----------EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFV 205 (242)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 45888999999999999999999 999999984 689999999 568
Q ss_pred hccccEEEEEecCCeEeecCCcccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
..+||++++ |++|++++.|++++++.
T Consensus 206 ~~~~d~i~~-l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 206 RSIADKVTV-LHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhCCEEEE-EECCeEEeeCCHHHHhc
Confidence 889999975 99999999999888764
No 164
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.3e-38 Score=297.11 Aligned_cols=208 Identities=12% Similarity=0.105 Sum_probs=161.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|+++... + |+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++...
T Consensus 3 i~~~nls~~~~~~~~~-~---l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i~~~-- 70 (275)
T cd03289 3 MTVKDLTAKYTEGGNA-V---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSWNSV-- 70 (275)
T ss_pred EEEEEEEEEeCCCCCc-c---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEhhhC--
Confidence 7999999999643221 4 777999999999999999999999999999999996 479999999987510
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.. ...++.++|++|+ +.+++.++.+|+.... . ...+++.++++.+||.+.+..+|++++
T Consensus 71 -~~-~~lr~~i~~v~q~-----------~~lf~~tv~~nl~~~~----~----~~~~~~~~~l~~~gL~~~~~~~p~~l~ 129 (275)
T cd03289 71 -PL-QKWRKAFGVIPQK-----------VFIFSGTFRKNLDPYG----K----WSDEEIWKVAEEVGLKSVIEQFPGQLD 129 (275)
T ss_pred -CH-HHHhhhEEEECCC-----------cccchhhHHHHhhhcc----C----CCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 00 0012344555554 4455556667764210 0 113467788999999998999999999
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
|.|++. ...||||||||++||||| ||||++||. ++|||+||| +.+. .
T Consensus 130 ~~~~~~------g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~-~ 202 (275)
T cd03289 130 FVLVDG------GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAML-E 202 (275)
T ss_pred ceecCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-h
Confidence 999987 449999999999999999 999999984 799999999 4555 4
Q ss_pred ccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
||||++ |++|++++.|++++++.++ .+...++..
T Consensus 203 ~dri~v-l~~G~i~~~g~~~~l~~~~--~~~~~~~~~ 236 (275)
T cd03289 203 CQRFLV-IEENKVRQYDSIQKLLNEK--SHFKQAISP 236 (275)
T ss_pred CCEEEE-ecCCeEeecCCHHHHhhCc--HHHHHHHhh
Confidence 999975 9999999999999998864 344555543
No 165
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=293.25 Aligned_cols=218 Identities=16% Similarity=0.189 Sum_probs=160.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~~~---i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQ---A---LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECCee---E---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 45799999999997532 3 77799999999999999999999999999999998710000379999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+.+| +.++............++++.++++.+++.+.+.
T Consensus 97 ~--~~~~~~~~~~i~~v~q~~~l~~~tv~en-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 159 (272)
T PRK14236 97 K--KVDVAELRRRVGMVFQRPNPFPKSIYEN-----------VVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK---- 159 (272)
T ss_pred c--ccCHHHHhccEEEEecCCccCcccHHHH-----------HHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH----
Confidence 1 0001112345677777765443334444 4332211111112334567888899999865321
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
+.+++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 160 ---------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~ 230 (272)
T PRK14236 160 ---------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQA 230 (272)
T ss_pred ---------HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
.++|||+++ |++|++++.|++++++..+.+.++..+
T Consensus 231 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 266 (272)
T PRK14236 231 ARVSDYTAF-MYMGKLVEYGDTDTLFTSPAKKQTEDY 266 (272)
T ss_pred HhhCCEEEE-EECCEEEecCCHHHHhcCCCcHHHHHH
Confidence 889999965 999999999999999887776665554
No 166
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-38 Score=290.29 Aligned_cols=216 Identities=17% Similarity=0.223 Sum_probs=158.6
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|++++.+..|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~~---~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 2 PIIEIENFSAYYGEKK---A---VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred ceEEEEeeEEEeCCce---e---EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 3799999999997532 4 777999999999999999999999999999999987211112899999999887411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. ......++.++|++|+...+...+.+|+.+ +............++++.++++.+++...+.
T Consensus 76 ~--~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 137 (250)
T PRK14262 76 Q--LDVTEYRKKVGMVFQKPTPFPMSIYDNVAF-----------GPRIHGVKSKHKLDRIVEESLKKAALWDEVK----- 137 (250)
T ss_pred h--hhHHHhhhhEEEEecCCccCcccHHHHHHH-----------HHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-----
Confidence 0 011112345778887765443224444433 2211111112334566788899999864220
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 138 --------~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~ 209 (250)
T PRK14262 138 --------SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI 209 (250)
T ss_pred --------HHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 135788999999999999999999 999999984 789999999 4678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
.+||++++ |++|+++..|+++++...+.++..+.
T Consensus 210 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~ 243 (250)
T PRK14262 210 RIADYIAF-MYRGELIEYGPTREIVERPKNKLTEE 243 (250)
T ss_pred HhCCEEEE-EECCEEEEecCHHHHHhCCCChHHHH
Confidence 89999975 99999999999999887665544433
No 167
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-38 Score=293.38 Aligned_cols=220 Identities=15% Similarity=0.185 Sum_probs=160.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 22 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDH---A---LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEECCcc---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 56899999999997543 3 77799999999999999999999999999999998521111589999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+. +|+.++.......+....++.+.++++.+++...+.
T Consensus 96 ~~--~~~~~~~~~i~~v~q~~~~~~~tv~-----------eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~---- 158 (271)
T PRK14238 96 KS--YSVEELRTNVGMVFQKPNPFPKSIY-----------DNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK---- 158 (271)
T ss_pred cc--ccHHHHhhhEEEEecCCccccccHH-----------HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH----
Confidence 10 0011123456777777654433344 444433211111112233456677788776532110
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 159 ---------~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i 229 (271)
T PRK14238 159 ---------DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQA 229 (271)
T ss_pred ---------HHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++||++++ |++|++++.|++++++.++.+++++.++.
T Consensus 230 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 267 (271)
T PRK14238 230 ARISDKTAF-FLNGYVNEYDDTDKIFSNPSDKRTEDYIT 267 (271)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHcCCCCHHHHHHHh
Confidence 889999975 99999999999999988887766655443
No 168
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=289.96 Aligned_cols=210 Identities=16% Similarity=0.215 Sum_probs=156.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 71 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLL---A---VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEG 71 (255)
T ss_pred CceEEEeeEEEEECCEE---E---EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCC
Confidence 34799999999997532 4 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHH-Hhhhhcchhhcc--CCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWI-MEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v-~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
.. .....+..++|++|+...+.++ +.+|+.+..... ...+..+..... .....+..+++.++++.+++.+
T Consensus 72 ~~---~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--- 145 (255)
T PRK11300 72 LP---GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE--- 145 (255)
T ss_pred CC---HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh---
Confidence 10 0111233466778877666554 666665432100 000000000000 0011233456788899999976
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEe
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 277 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|
T Consensus 146 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s 211 (255)
T PRK11300 146 --------------HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred --------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 56889999999999999999999 999999983 68999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
| +.+..+||++++ |++|+++..|++++++..
T Consensus 212 H~~~~~~~~~d~i~~-l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 212 HDMKLVMGISDRIYV-VNQGTPLANGTPEEIRNN 244 (255)
T ss_pred CCHHHHHHhCCEEEE-EECCeEEecCCHHHHhhC
Confidence 9 567889999965 999999999998887643
No 169
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-37 Score=287.17 Aligned_cols=182 Identities=15% Similarity=0.181 Sum_probs=146.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~~~~---i---l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~- 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGERT---V---LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAPLA- 77 (257)
T ss_pred CCcEEEEEEEEEECCcc---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEHH-
Confidence 45799999999997643 3 777999999999999999999999999999999999 99999999987753
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .++.++|++|+...+..+ ++.+|+.++.. ...++++.++++.+++.+
T Consensus 78 -----~---~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~------- 125 (257)
T PRK11247 78 -----E---AREDTRLMFQDARLLPWK----------KVIDNVGLGLK-------GQWRDAALQALAAVGLAD------- 125 (257)
T ss_pred -----H---hhCceEEEecCccCCCCC----------cHHHHHHhccc-------chHHHHHHHHHHHcCChh-------
Confidence 1 123467777765444322 44455443321 112456788999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. +.|+|+||| +
T Consensus 126 ----------~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 126 ----------RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45888999999999999999999 999999983 789999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCcc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~ 304 (346)
.+..+||++++ |++|++++.++.+
T Consensus 196 ~~~~~~d~i~~-l~~G~i~~~~~~~ 219 (257)
T PRK11247 196 EAVAMADRVLL-IEEGKIGLDLTVD 219 (257)
T ss_pred HHHHhCCEEEE-EECCEEEeecccc
Confidence 67889999965 9999999988764
No 170
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=293.64 Aligned_cols=219 Identities=17% Similarity=0.207 Sum_probs=162.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++..
T Consensus 19 ~~~l~i~nl~~~~~~~~---i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 19 APAMAAVNLTLGFAGKT---V---LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred CcEEEEeeEEEEECCEE---E---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccc
Confidence 56899999999997532 4 77799999999999999999999999999999999821111269999999988741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ......++.++|++|+...+...+.+|+.+ +............++++.++++.+++.....
T Consensus 93 ~---~~~~~~~~~i~~v~q~~~l~~~tv~eni~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 154 (276)
T PRK14271 93 Y---RDVLEFRRRVGMLFQRPNPFPMSIMDNVLA-----------GVRAHKLVPRKEFRGVAQARLTEVGLWDAVK---- 154 (276)
T ss_pred c---chhHHHhhheEEeccCCccCCccHHHHHHH-----------HHHhccCCCHHHHHHHHHHHHHHcCCCchhh----
Confidence 0 001112345678887765554335555433 2111111122344456778899999864210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 155 ---------~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~ 225 (276)
T PRK14271 155 ---------DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQA 225 (276)
T ss_pred ---------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 024678999999999999999999 999999984 689999999 568
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|++++.|++++++..+.++++..++.
T Consensus 226 ~~~~dri~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK14271 226 ARISDRAAL-FFDGRLVEEGPTEQLFSSPKHAETARYVA 263 (276)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCcCcHHHHHHHh
Confidence 889999965 99999999999999988877766555443
No 171
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-38 Score=293.79 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=152.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 9 ~~~l~i~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 77 (265)
T PRK10575 9 DTTFALRNVSFRVPGRT---L---LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPLES 77 (265)
T ss_pred CceEEEeeEEEEECCEE---E---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEehhh
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc-c--CCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI-R--RSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~-~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
. .... .++.++|++|+...+.++ ++.+|+.++.... . .......++++.++++.+++.+
T Consensus 78 ~---~~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 139 (265)
T PRK10575 78 W---SSKA-FARKVAYLPQQLPAAEGM----------TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP---- 139 (265)
T ss_pred C---CHHH-HhhheEEeccCCCCCCCc----------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----
Confidence 1 0111 133567777765444332 3334443321100 0 0012234567889999999976
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 140 -------------~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH 206 (265)
T PRK10575 140 -------------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206 (265)
T ss_pred -------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46889999999999999999999 999999884 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|++++.|+++++..
T Consensus 207 ~~~~i~~~~d~i~~-l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 207 DINMAARYCDYLVA-LRGGEMIAQGTPAELMR 237 (265)
T ss_pred CHHHHHHhCCEEEE-EECCeEEEecCHHHhcC
Confidence 567889999964 99999999998887654
No 172
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7.2e-38 Score=282.64 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=142.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++. . + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-~--~---l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 66 (208)
T cd03268 1 LKTNDLTKTYGKK-R--V---LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQK--- 66 (208)
T ss_pred CEEEEEEEEECCe-E--e---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCcccc---
Confidence 5799999999653 2 4 777999999999999999999999999999999999 999999999988741
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
....++.++|++|+...+..+ ++.+|+.+...... ..++++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~---------- 118 (208)
T cd03268 67 ---NIEALRRIGALIEAPGFYPNL----------TARENLRLLARLLG-----IRKKRIDEVLDVVGLKD---------- 118 (208)
T ss_pred ---hHHHHhhEEEecCCCccCccC----------cHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHH----------
Confidence 111133566777765444332 34444433221111 12456788999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 119 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 119 -------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred -------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 45788999999999999999999 999999984 789999999 56778
Q ss_pred cccEEEEEecCCeEeecC
Q 019066 284 LTDRARIRTYLGELLGIP 301 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g 301 (346)
+||++++ |++|++++.|
T Consensus 192 ~~d~v~~-l~~g~i~~~g 208 (208)
T cd03268 192 VADRIGI-INKGKLIEEG 208 (208)
T ss_pred hcCEEEE-EECCEEEecC
Confidence 9999965 9999998765
No 173
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=284.23 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=148.0
Q ss_pred CCcEEEeeeEEEeCCCCc-eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~-~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||++.|+++.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~ 74 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDV---LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPMS 74 (233)
T ss_pred CceEEEEeEEEEcCCCCcceee---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcC
Confidence 357999999999975321 124 777999999999999999999999999999999999 99999999999875
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.....+.....++.++|++|+...+..+ +.+|+.+. .... .......++++.++++.+|+.+
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~gl~~----- 137 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMP-----------LLIG-KKKPAEINSRALEMLAAVGLEH----- 137 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHH-----------HHhc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 2111000011124577888876555443 55554432 1111 1123345567889999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++.+.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 138 ------------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 138 ------------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45788999999999999999999 999999884 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
+.+.. +|+++ +|++|++++.++
T Consensus 206 ~~~~~~-~~~~~-~l~~G~i~~~~~ 228 (233)
T PRK11629 206 LQLAKR-MSRQL-EMRDGRLTAELS 228 (233)
T ss_pred HHHHHh-hCEEE-EEECCEEEEEec
Confidence 45665 57885 599999998775
No 174
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=324.18 Aligned_cols=221 Identities=13% Similarity=0.172 Sum_probs=165.8
Q ss_pred CCcEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++|+++||++.|+... ...+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|.|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~---l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~~~ 81 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAA---VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKMLLR 81 (623)
T ss_pred CceEEEeceEEEecCCCCceeE---EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEEec
Confidence 56899999999996421 1235 667999999999999999999999999999999999 99999999997552
Q ss_pred Cc-----cc--ccc---cccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHH
Q 019066 147 GT-----YF--LQE---YTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAH 214 (346)
Q Consensus 147 ~~-----~~--~~~---~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 214 (346)
.. .. ... ..+.++.++|++|++. .+..+ ++.+|+.++...+......+.++++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~ 151 (623)
T PRK10261 82 RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVF----------TVGEQIAESIRLHQGASREEAMVEAKRMLD 151 (623)
T ss_pred cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 10 00 000 0112235666666642 22222 455555544322112234456678999999
Q ss_pred HcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------
Q 019066 215 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 269 (346)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------- 269 (346)
.+||.+.. ..+++++++|||||||||+||||| ||||++||.
T Consensus 152 ~~gL~~~~--------------~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~ 217 (623)
T PRK10261 152 QVRIPEAQ--------------TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217 (623)
T ss_pred HCCCCChh--------------hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh
Confidence 99996410 046889999999999999999999 999999984
Q ss_pred -CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 270 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 270 -g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
|+|||+||| +.+.++||||++ |++|++++.|++++++..+.+++++.++..
T Consensus 218 ~g~tvi~itHdl~~~~~~adri~v-l~~G~i~~~g~~~~~~~~~~~~~~~~l~~~ 271 (623)
T PRK10261 218 MSMGVIFITHDMGVVAEIADRVLV-MYQGEAVETGSVEQIFHAPQHPYTRALLAA 271 (623)
T ss_pred cCCEEEEEcCCHHHHHHhCCEEEE-eeCCeecccCCHHHhhcCCCChhhhhhhhc
Confidence 789999999 578899999975 999999999999999988888777666543
No 175
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-38 Score=287.64 Aligned_cols=196 Identities=13% Similarity=0.169 Sum_probs=150.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ---A---LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITD 71 (237)
T ss_pred ccEEEEEeEEEeeCCce---e---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCC
Confidence 35799999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHc-CCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~ 225 (346)
.. .....++.++|++|+...+.+. +.+|+. ++... .......+++.++++.+ ++.+
T Consensus 72 ~~---~~~~~~~~i~~~~q~~~~~~~~tv~~~l~-----------~~~~~---~~~~~~~~~~~~~l~~~~~l~~----- 129 (237)
T PRK11614 72 WQ---TAKIMREAVAIVPEGRRVFSRMTVEENLA-----------MGGFF---AERDQFQERIKWVYELFPRLHE----- 129 (237)
T ss_pred CC---HHHHHHhCEEEeccCcccCCCCcHHHHHH-----------Hhhhc---cChhHHHHHHHHHHHHHHHHHH-----
Confidence 10 0011234567777776554432 444443 32110 01122344566777777 4654
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 130 ------------~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (237)
T PRK11614 130 ------------RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 197 (237)
T ss_pred ------------HHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 34778999999999999999999 999999984 899999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+.++|||+++ |++|++++.|++++++..
T Consensus 198 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 198 NQALKLADRGYV-LENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHHhhCCEEEE-EeCCEEEeeCCHHHHhcC
Confidence 468899999975 999999999999888643
No 176
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=290.28 Aligned_cols=220 Identities=14% Similarity=0.167 Sum_probs=161.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++......++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~~~---i---l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK---A---IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred cceEEEEEEEEEECCeE---e---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 34799999999997532 4 67799999999999999999999999999999998711100058999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+.+|+. ++.......+.....+++.++++.+++...+.
T Consensus 79 ~~--~~~~~~~~~i~~v~q~~~l~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 141 (259)
T PRK14260 79 PR--ININRLRRQIGMVFQRPNPFPMSIYENVA-----------YGVRISAKLPQADLDEIVESALKGAALWQEVK---- 141 (259)
T ss_pred cc--cchHhhhhheEEEecccccCCccHHHHHH-----------HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh----
Confidence 00 00111234567888776554433555443 32211111122344567788899999854221
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+|||||+||++||||| ||||++||. ++|+|++|| +.+
T Consensus 142 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i 212 (259)
T PRK14260 142 ---------DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212 (259)
T ss_pred ---------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 689999999 678
Q ss_pred hccccEEEEEec-----CCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTY-----LGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~-----~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |+ +|++++.|++++++..+.++++..++.
T Consensus 213 ~~~~d~i~~-l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (259)
T PRK14260 213 TRVSDFTAF-FSTDESRIGQMVEFGVTTQIFSNPLDSRTRDYVS 255 (259)
T ss_pred HHhcCeEEE-EeccCCCCceEEEeCCHHHHhcCCCChHHHHhhh
Confidence 899999975 87 599999999999988887777666543
No 177
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.1e-37 Score=283.27 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=140.9
Q ss_pred EEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|+++||+++|+++. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA---LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISKLS 72 (218)
T ss_pred CeEeeeEEEecCCCcceeE---EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhhcc
Confidence 57899999997521 0124 777999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
........++.++|++|+...+..+ +.+|+.+ +.... .......++++.++++.+++.+
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 132 (218)
T cd03255 73 EKELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----------PLLLA-GVPKKERRERAEELLERVGLGD-------- 132 (218)
T ss_pred hhHHHHHHhhcEEEEeeccccCCCCcHHHHHHH-----------HHhhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 0000011234567777776555443 5555433 22111 1112334567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. ++|+|++|| +.
T Consensus 133 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 133 ---------RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred ---------hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 45888999999999999999999 999999984 689999999 45
Q ss_pred hhccccEEEEEecCCeE
Q 019066 281 LLSLTDRARIRTYLGEL 297 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~i 297 (346)
+. +||++++ |++|++
T Consensus 204 ~~-~~d~v~~-l~~G~i 218 (218)
T cd03255 204 AE-YADRIIE-LRDGKI 218 (218)
T ss_pred Hh-hhcEEEE-eeCCcC
Confidence 65 8999965 999874
No 178
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.1e-37 Score=282.55 Aligned_cols=187 Identities=19% Similarity=0.221 Sum_probs=141.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~~--i---l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA--A---LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNRLR 70 (214)
T ss_pred CEEEEeeeEEeCCCce--e---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccCC
Confidence 4899999999953232 4 677999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+... ++.+|+.++.... .......++++.++++.+++.+
T Consensus 71 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 129 (214)
T TIGR02673 71 -GRQLPLLRRRIGVVFQDFRLLPDR----------TVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEH--------- 129 (214)
T ss_pred -HHHHHHHHhheEEEecChhhccCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 000011133567777765544332 3334443322111 1123345577889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 130 --------KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45788999999999999999999 999999984 799999999 5788
Q ss_pred ccccEEEEEecCCe
Q 019066 283 SLTDRARIRTYLGE 296 (346)
Q Consensus 283 ~~aDri~v~l~~G~ 296 (346)
.+||++++ |++|+
T Consensus 202 ~~~d~i~~-l~~G~ 214 (214)
T TIGR02673 202 RVAHRVII-LDDGR 214 (214)
T ss_pred HhcCEEEE-ecCCC
Confidence 89999965 98874
No 179
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=281.39 Aligned_cols=182 Identities=14% Similarity=0.175 Sum_probs=145.6
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~~~---~---l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~---- 65 (210)
T cd03269 1 LEVENVTKRFGRVT---A---LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLD---- 65 (210)
T ss_pred CEEEEEEEEECCEE---E---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCchh----
Confidence 57899999997532 4 777999999999999999999999999999999999 99999999998764
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ..++.++|++|+...+.+. +.+|+.+... .. .......++++.++++.+++.+
T Consensus 66 --~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-----------~~-~~~~~~~~~~~~~~l~~~~l~~--------- 120 (210)
T cd03269 66 --I--AARNRIGYLPEERGLYPKMKVIDQLVYLAQ-----------LK-GLKKEEARRRIDEWLERLELSE--------- 120 (210)
T ss_pred --H--HHHccEEEeccCCcCCcCCcHHHHHHHHHH-----------Hc-CCChHHHHHHHHHHHHHcCChH---------
Confidence 1 1234567888887655543 5555543211 00 1122345577889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 121 --------~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 121 --------YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred --------HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 45788999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
.+||++++ |++|++++.|
T Consensus 193 ~~~d~i~~-l~~g~i~~~~ 210 (210)
T cd03269 193 ELCDRVLL-LNKGRAVLYG 210 (210)
T ss_pred HhhhEEEE-EeCCEEEecC
Confidence 89999965 9999998754
No 180
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=294.86 Aligned_cols=221 Identities=18% Similarity=0.203 Sum_probs=161.0
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+.+..+..|++|+|.++|+++.
T Consensus 36 ~~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFE---A---VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 356899999999997532 3 7779999999999999999999999999999998531100138999999998874
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
... ......++.++|++|+...+...+.+| +.++............++++.++++.+++...+.
T Consensus 110 ~~~--~~~~~~~~~i~~v~q~~~l~~~tv~en-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--- 173 (286)
T PRK14275 110 GKF--TDEVLLRKKIGMVFQKPNPFPKSIFDN-----------IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS--- 173 (286)
T ss_pred hcc--cchHHhhhcEEEECCCCCCCccCHHHH-----------HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---
Confidence 100 000112445677777765443334444 4433211111112334567788899998853210
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
..+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 174 ----------~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 174 ----------DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred ----------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 135788999999999999999999 999999984 679999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+..+|||+++ |++|++++.|++++++..+.+++++.++.
T Consensus 244 ~~~~~d~i~~-L~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 282 (286)
T PRK14275 244 ASRVSDYTMF-FYEGVLVEHAPTAQLFTNPKDRMTEDYIT 282 (286)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHHHH
Confidence 7889999965 99999999999999988877766555543
No 181
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=294.16 Aligned_cols=200 Identities=15% Similarity=0.180 Sum_probs=154.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC---ceEEECcee
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~---G~I~~~g~~ 144 (346)
..+|+++|+++.|++... .+ |++|||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+
T Consensus 3 ~~~l~i~~l~~~~~~~~~-~~---l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKK-PA---LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGIT 73 (282)
T ss_pred CceEEEEEEEEEcCCCCc-cc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEE
Confidence 457999999999965321 14 777999999999999999999999999999999999 887 899999998
Q ss_pred CCCcccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
+... .....++.++|++|++. .+. ..++.+|+.++.... .....+.++++.++++.++|.+
T Consensus 74 ~~~~----~~~~~~~~ig~v~q~~~~~~~----------~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~--- 135 (282)
T PRK13640 74 LTAK----TVWDIREKVGIVFQNPDNQFV----------GATVGDDVAFGLENR-AVPRPEMIKIVRDVLADVGMLD--- 135 (282)
T ss_pred CCcC----CHHHHHhheEEEEECHHHhhc----------cCCHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCChh---
Confidence 7510 00011335567666642 221 224455554432211 1223455677899999999987
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEe
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 277 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiT 277 (346)
..++++.+|||||+||++||||| ||||++||. |+|||++|
T Consensus 136 --------------~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t 201 (282)
T PRK13640 136 --------------YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201 (282)
T ss_pred --------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56899999999999999999999 999999983 78999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
| +.+ ..||++++ |++|++++.|++++++..+
T Consensus 202 H~~~~~-~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 234 (282)
T PRK13640 202 HDIDEA-NMADQVLV-LDDGKLLAQGSPVEIFSKV 234 (282)
T ss_pred cCHHHH-HhCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 9 455 57999965 9999999999999887653
No 182
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=289.39 Aligned_cols=213 Identities=16% Similarity=0.196 Sum_probs=159.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-----CceEEECce
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 143 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-----~G~I~~~g~ 143 (346)
++|+++|++++|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|+
T Consensus 6 ~~l~~~nl~~~~~~~~---i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK---I---LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-----LESEVRVEGRVEFFNQ 74 (261)
T ss_pred ceEEEeeEEEEeCCee---E---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-----CCCCccccceEEECCE
Confidence 4799999999997532 4 777999999999999999999999999999999998 64 899999998
Q ss_pred eCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
++.... ......++.++|++|+...+...+.+| +.+.............++++.++++.+++.+.+.
T Consensus 75 ~i~~~~--~~~~~~~~~i~~~~q~~~l~~~tv~en-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 141 (261)
T PRK14258 75 NIYERR--VNLNRLRRQVSMVHPKPNLFPMSVYDN-----------VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141 (261)
T ss_pred Ehhccc--cchHHhhccEEEEecCCccCcccHHHH-----------HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh
Confidence 863100 000111345677777654443224444 4332111111122334567888999999864221
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEe
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 277 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiT 277 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|
T Consensus 142 -------------~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 142 -------------HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred -------------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 035788899999999999999999 999999873 78999999
Q ss_pred c--hhhhccccEEEEEecC-----CeEeecCCccccccCCCCCChHHHH
Q 019066 278 H--GDLLSLTDRARIRTYL-----GELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~-----G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
| +.+.++||++++ |++ |++++.|++++++.+|.+++++.+.
T Consensus 209 H~~~~i~~~~d~i~~-l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 256 (261)
T PRK14258 209 HNLHQVSRLSDFTAF-FKGNENRIGQLVEFGLTKKIFNSPHDSRTREYV 256 (261)
T ss_pred CCHHHHHHhcCEEEE-EccCCCcCceEEEeCCHHHHHhCCCCHHHHHHH
Confidence 9 578899999975 999 9999999999999888776655443
No 183
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=292.70 Aligned_cols=202 Identities=15% Similarity=0.207 Sum_probs=154.8
Q ss_pred CCcEEEeeeEEEeCCCC---ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 68 GSLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~---~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.++|+++||+++|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~v---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~ 73 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLA---LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGLD 73 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe
Confidence 35799999999997421 1124 777999999999999999999999999999999999 999999999998
Q ss_pred CCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
+.... .....++.++|++|++... ++..++.+|+.++.... .....+.++++.++++.+||.+
T Consensus 74 i~~~~---~~~~~~~~i~~v~q~~~~~---------~~~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~---- 136 (280)
T PRK13633 74 TSDEE---NLWDIRNKAGMVFQNPDNQ---------IVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYE---- 136 (280)
T ss_pred ccccc---cHHHHhhheEEEecChhhh---------hccccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHh----
Confidence 75100 0011134567777764211 11123445555443211 1223455678899999999987
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 137 -------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH 203 (280)
T PRK13633 137 -------------YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203 (280)
T ss_pred -------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56889999999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+.. ||++++ |++|+++..|++++++..
T Consensus 204 ~~~~~~~-~d~v~~-l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 204 YMEEAVE-ADRIIV-MDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred ChHHHhc-CCEEEE-EECCEEEEecCHHHHhcC
Confidence 45655 999965 999999999999988764
No 184
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=289.49 Aligned_cols=186 Identities=15% Similarity=0.214 Sum_probs=146.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 67 (255)
T PRK11248 1 MLQISHLYADYGGKP---A---LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVEG-- 67 (255)
T ss_pred CEEEEEEEEEeCCee---e---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 589999999997532 3 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 68 -------~~~~~~~v~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~--------- 120 (255)
T PRK11248 68 -------PGAERGVVFQNEGLLPWR----------NVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG--------- 120 (255)
T ss_pred -------CCCcEEEEeCCCccCCCC----------cHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 011346777765444322 3334443322111 1123344567889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 121 --------~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~ 192 (255)
T PRK11248 121 --------AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192 (255)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999983 789999999 578
Q ss_pred hccccEEEEEec--CCeEeecCCcc
Q 019066 282 LSLTDRARIRTY--LGELLGIPPAK 304 (346)
Q Consensus 282 ~~~aDri~v~l~--~G~iv~~g~~~ 304 (346)
..+||++++ |+ +|++++.++.+
T Consensus 193 ~~~~d~i~~-l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 193 VFMATELVL-LSPGPGRVVERLPLN 216 (255)
T ss_pred HHhCCEEEE-EeCCCcEEEEEecCC
Confidence 889999965 88 59999987653
No 185
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=287.88 Aligned_cols=218 Identities=16% Similarity=0.174 Sum_probs=158.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|+.. . + |+++||+|.+||+++|+||||||||||+++|+|+++..+..+++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~~-~--~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFYGKF-E--A---LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEECCe-e--E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 5689999999999753 2 4 77799999999999999999999999999999986411100258999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+.+|+.+ +............++++.++++.+++...+.
T Consensus 77 ~--~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~---- 139 (252)
T PRK14255 77 P--NEDVVQLRKQVGMVFQQPNPFPFSIYENVIY-----------GLRLAGVKDKAVLDEAVETSLKQAAIWDEVK---- 139 (252)
T ss_pred c--cccHHHhcCeEEEEECCCccCCCcHHHHHHH-----------HHHHcCCCCHHHHHHHHHHHHHHcCCccchh----
Confidence 0 0011112346778888765554335555433 2111111112233456677888888753210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
...++.+.+||||||||++||||| ||||++||. +.|+|+||| +.+
T Consensus 140 ---------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 210 (252)
T PRK14255 140 ---------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA 210 (252)
T ss_pred ---------hHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH
Confidence 135788999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
..+||++++ |++|++++.|++.+++.++.+.+.+.+
T Consensus 211 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 246 (252)
T PRK14255 211 SRISDKTAF-FLTGNLIEFADTKQMFLNPKEKETEDY 246 (252)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcCCCChHHHHH
Confidence 889999965 999999999999999988876654443
No 186
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-38 Score=283.07 Aligned_cols=184 Identities=14% Similarity=0.137 Sum_probs=144.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++. . + |+|+||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~-~--~---l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 66 (211)
T cd03264 1 LQLENLTKRYGKK-R--A---LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVLKQ-- 66 (211)
T ss_pred CEEEEEEEEECCE-E--E---EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccccc--
Confidence 5799999999653 2 4 67799999999 999999999999999999999999 9999999999887411
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ...++.++|++|+...+..+ +.+|+.+.. ... .......++++.++++.+++.+
T Consensus 67 -~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-----------~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (211)
T cd03264 67 -P--QKLRRRIGYLPQEFGVYPNFTVREFLDYIA-----------WLK-GIPSKEVKARVDEVLELVNLGD--------- 122 (211)
T ss_pred -h--HHHHhheEEecCCCcccccCCHHHHHHHHH-----------HHh-CCCHHHHHHHHHHHHHHCCCHH---------
Confidence 0 11134567777776555443 555544321 111 1112334567889999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.+
T Consensus 123 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 123 --------RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred --------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 45888999999999999999999 999999984 789999999 56778
Q ss_pred cccEEEEEecCCeEeecC
Q 019066 284 LTDRARIRTYLGELLGIP 301 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g 301 (346)
+|||+++ |++|++++.|
T Consensus 195 ~~d~i~~-l~~g~i~~~g 211 (211)
T cd03264 195 LCNQVAV-LNKGKLVFEG 211 (211)
T ss_pred hCCEEEE-EECCEEEecC
Confidence 9999965 9999998765
No 187
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-37 Score=281.11 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=139.3
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++||+++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~~~--~---l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~---- 66 (205)
T cd03226 1 RIENISFSYKKGTE--I---LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPIKA---- 66 (205)
T ss_pred CcccEEEEeCCcCc--e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEhhh----
Confidence 47899999975222 3 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
...++.++|++|++.. .++..++.+|+.++..... ...+++.++++.+++.+
T Consensus 67 ---~~~~~~i~~~~q~~~~---------~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~----------- 118 (205)
T cd03226 67 ---KERRKSIGYVMQDVDY---------QLFTDSVREELLLGLKELD-----AGNEQAETVLKDLDLYA----------- 118 (205)
T ss_pred ---HHhhcceEEEecChhh---------hhhhccHHHHHhhhhhhcC-----ccHHHHHHHHHHcCCch-----------
Confidence 1123356677766421 1122255566654322111 12356788999999987
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhcc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~~ 284 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+..+
T Consensus 119 ------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 119 ------LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred ------hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 46888999999999999999999 999999984 789999999 567789
Q ss_pred ccEEEEEecCCeEe
Q 019066 285 TDRARIRTYLGELL 298 (346)
Q Consensus 285 aDri~v~l~~G~iv 298 (346)
||++++ |++|+++
T Consensus 193 ~d~i~~-l~~G~iv 205 (205)
T cd03226 193 CDRVLL-LANGAIV 205 (205)
T ss_pred CCEEEE-EECCEEC
Confidence 999964 9999975
No 188
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.5e-37 Score=301.03 Aligned_cols=198 Identities=16% Similarity=0.211 Sum_probs=154.0
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
++ ||+++|++. . + ++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++......
T Consensus 2 ~~-~l~~~~~~~--~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~~~~~~ 67 (354)
T TIGR02142 2 SA-RFSKRLGDF--S-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLFDSRKG 67 (354)
T ss_pred EE-EEEEEECCE--E-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECccCccc
Confidence 44 899999652 2 5 6999999999999999999999999999999999 9999999999987411000
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
......++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.++|.+
T Consensus 68 ~~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~----------- 123 (354)
T TIGR02142 68 IFLPPEKRRIGYVFQEARLFPHL----------SVRGNLRYGMKRA---RPSERRISFERVIELLGIGH----------- 123 (354)
T ss_pred cccchhhCCeEEEecCCccCCCC----------cHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChh-----------
Confidence 00111234567777776555443 3344444332211 12334567889999999987
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~ 283 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|+||| +.+..
T Consensus 124 ------~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~ 197 (354)
T TIGR02142 124 ------LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLR 197 (354)
T ss_pred ------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 56899999999999999999999 999999984 789999999 56888
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
+||++++ |++|++++.|++++++..|...+
T Consensus 198 ~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 198 LADRVVV-LEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred hCCEEEE-EeCCEEEEECCHHHHhcCcCccc
Confidence 9999965 99999999999999998887665
No 189
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=290.64 Aligned_cols=217 Identities=15% Similarity=0.168 Sum_probs=159.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 8 ~~~l~i~~v~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 8 ETVLRTENLNVYYGSFL---A---VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred ceEEEEeeeEEEECCEE---E---eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 35799999999997532 4 67799999999999999999999999999999998611111378999999988741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
... .....++.++|++|+...+ +.++.+|+.++...... ....++++.++++.+++...+.
T Consensus 82 ~~~--~~~~~~~~i~~v~q~~~~~-----------~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~l~---- 142 (264)
T PRK14243 82 PDV--DPVEVRRRIGMVFQKPNPF-----------PKSIYDNIAYGARINGY--KGDMDELVERSLRQAALWDEVK---- 142 (264)
T ss_pred ccc--ChHHHhhhEEEEccCCccc-----------cccHHHHHHhhhhhcCc--chHHHHHHHHHHHHhCchhhHH----
Confidence 000 0011133456666664333 22445555543321111 1233456677888888854220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
...++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 143 ---------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~ 213 (264)
T PRK14243 143 ---------DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQA 213 (264)
T ss_pred ---------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 135778999999999999999999 999999984 689999999 578
Q ss_pred hccccEEEEEec---------CCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~---------~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+|||+++ |+ +|++++.|++++++..|.+++++.++
T Consensus 214 ~~~~d~v~~-l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 259 (264)
T PRK14243 214 ARVSDMTAF-FNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYV 259 (264)
T ss_pred HHhCCEEEE-EecccccccccCceEEEeCCHHHHHhCCCcHHHHHHh
Confidence 899999965 88 89999999999999888877766544
No 190
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=288.05 Aligned_cols=217 Identities=18% Similarity=0.219 Sum_probs=158.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++. . + |+|+||+|++||+++|+||||||||||+++|+|++++.+...++|+|.++|.++....
T Consensus 4 ~l~~~~l~~~~~~~-~--~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGDK-Q--A---VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECCE-E--e---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 68999999999753 2 4 6779999999999999999999999999999999971100013899999999875100
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .....++.++|++|+...+... +.+|+.+ +.............+.+.++++.+++...+.
T Consensus 78 -~-~~~~~~~~i~~~~q~~~~~~~~t~~enl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~----- 139 (252)
T PRK14272 78 -V-DPVAMRRRVGMVFQKPNPFPTMSVFDNVVA-----------GLKLAGIRDRDHLMEVAERSLRGAALWDEVK----- 139 (252)
T ss_pred -c-CHHHhhceeEEEeccCccCcCCCHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-----
Confidence 0 0111244577888876555433 5555433 2111111112334556777778787653210
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
..+++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 140 --------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 211 (252)
T PRK14272 140 --------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAA 211 (252)
T ss_pred --------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 135788999999999999999999 999999984 699999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
.+|||+++ |++|++++.|++++++..+.++.+..++
T Consensus 212 ~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 247 (252)
T PRK14272 212 RVSDTTSF-FLVGDLVEHGPTDQLFTNPRDERTEAYV 247 (252)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence 89999965 9999999999999998887766655544
No 191
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=291.21 Aligned_cols=199 Identities=13% Similarity=0.224 Sum_probs=153.3
Q ss_pred CCcEEEeeeEEEeCC-CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~-~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++|++++|++ ... + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~--i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~ 74 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENN--A---LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITIS 74 (271)
T ss_pred ceEEEEEeEEEEcCCCCcc--c---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecC
Confidence 468999999999963 222 4 777999999999999999999999999999999999 99999999999875
Q ss_pred CcccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.. .....++.++|++|++. .+.. .++.+|+.++.... .......++++.++++.+++.+
T Consensus 75 ~~----~~~~~~~~i~~v~q~~~~~~~~----------~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----- 134 (271)
T PRK13632 75 KE----NLKEIRKKIGIIFQNPDNQFIG----------ATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMED----- 134 (271)
T ss_pred cC----CHHHHhcceEEEEeCHHHhcCc----------ccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCHH-----
Confidence 10 00111345677777652 2222 24445544432211 1123345567889999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++||
T Consensus 135 ------------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 135 ------------YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred ------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 46888999999999999999999 999999984 489999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+.+. .||++++ |++|++++.|++++++..+
T Consensus 203 ~~~~~-~~d~v~~-l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 203 MDEAI-LADKVIV-FSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred hhHHh-hCCEEEE-EECCEEEEecCHHHHhcCH
Confidence 4554 7999965 9999999999988877654
No 192
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.3e-37 Score=281.86 Aligned_cols=187 Identities=19% Similarity=0.197 Sum_probs=141.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~~--~---l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~- 69 (214)
T cd03292 1 IEFINVTKTYPNGTA--A---LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDLR- 69 (214)
T ss_pred CEEEEEEEEeCCCce--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccCC-
Confidence 578999999965333 4 777999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.......++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~----------t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 128 (214)
T cd03292 70 GRAIPYLRRKIGVVFQDFRLLPDR----------NVYENVAFALEVT-GVPPREIRKRVPAALELVGLSH---------- 128 (214)
T ss_pred HHHHHHHHHheEEEecCchhccCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH----------
Confidence 000011233566777765544432 3334443322111 1123345567889999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 129 -------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 129 -------KHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred -------HhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45888999999999999999999 999999984 799999999 56778
Q ss_pred cccEEEEEecCCeE
Q 019066 284 LTDRARIRTYLGEL 297 (346)
Q Consensus 284 ~aDri~v~l~~G~i 297 (346)
+||++++ |++|++
T Consensus 202 ~~d~i~~-l~~G~~ 214 (214)
T cd03292 202 TRHRVIA-LERGKL 214 (214)
T ss_pred hCCEEEE-EeCCcC
Confidence 9999965 999874
No 193
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-37 Score=290.25 Aligned_cols=199 Identities=14% Similarity=0.179 Sum_probs=152.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++... .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~~~~~-~~---l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDAS-FT---LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAITD 75 (269)
T ss_pred CceEEEEEEEEEcCCCCC-cc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCc
Confidence 457999999999975321 14 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. .....++.++|++|++. .+.+. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 76 ~----~~~~~~~~i~~v~q~~~~~~~~~----------~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 134 (269)
T PRK13648 76 D----NFEKLRKHIGIVFQNPDNQFVGS----------IVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLE------ 134 (269)
T ss_pred C----CHHHHHhheeEEEeChHHhcccc----------cHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 0 00111345677777753 23222 2333333322111 1123344567889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+||+|||||++||||| ||||++||. |.|+|++||
T Consensus 135 -----------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 135 -----------RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45888999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+.. |||+++ |++|++++.|+++++...
T Consensus 204 ~~~~~-~d~i~~-l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 204 SEAME-ADHVIV-MNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred hHHhc-CCEEEE-EECCEEEEecCHHHHhcC
Confidence 45655 999975 999999999999888665
No 194
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-37 Score=282.75 Aligned_cols=193 Identities=17% Similarity=0.239 Sum_probs=151.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++ . ..++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~--~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 65 (232)
T PRK10771 1 MLKLTDITWLYHH--L------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHTT-- 65 (232)
T ss_pred CeEEEEEEEEECC--c------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecCc--
Confidence 4899999999964 2 336999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+.++ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 66 ----~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 121 (232)
T PRK10771 66 ----TPPSRRPVSMLFQENNLFSHL----------TVAQNIGLGLNPG-LKLNAAQREKLHAIARQMGIED--------- 121 (232)
T ss_pred ----CChhhccEEEEecccccccCC----------cHHHHHhcccccc-cCCCHHHHHHHHHHHHHcCcHH---------
Confidence 111133566777765444332 3444444332110 0012334567899999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 122 --------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~ 193 (232)
T PRK10771 122 --------LLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA 193 (232)
T ss_pred --------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 46899999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
..+||++++ |++|++++.|++++++..+
T Consensus 194 ~~~~d~i~~-l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 194 ARIAPRSLV-VADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCh
Confidence 889999965 9999999999998887654
No 195
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.7e-37 Score=283.83 Aligned_cols=203 Identities=17% Similarity=0.234 Sum_probs=160.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~i~~l~~~~~~~~---i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~~--- 66 (237)
T TIGR00968 1 IEIANISKRFGSFQ---A---LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDATR--- 66 (237)
T ss_pred CEEEEEEEEECCee---e---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 57999999997543 3 777999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++++...+.++ +.+|+.+ ..... ........+.+.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~t~~enl~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (237)
T TIGR00968 67 ---VHARDRKIGFVFQHYALFKHLTVRDNIAF-----------GLEIR-KHPKAKIKARVEELLELVQLEG--------- 122 (237)
T ss_pred ---CChhhcCEEEEecChhhccCCcHHHHHHh-----------HHHhc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 111234567777776555432 4554432 22111 1112334567789999999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++.+.+||+||+||++||||| ||||++||. ++|+|++|| +.+
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 123 --------LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194 (237)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999983 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++||++++ |++|++++.|++++++..+.++++..++.
T Consensus 195 ~~~~d~i~~-l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
T TIGR00968 195 MEVADRIVV-MSNGKIEQIGSPDEVYDHPANPFVMSFLG 232 (237)
T ss_pred HhhcCEEEE-EECCEEEEecCHHHHHcCCCcHHHHHhcc
Confidence 889999975 99999999999999988777666665554
No 196
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.9e-37 Score=282.70 Aligned_cols=190 Identities=17% Similarity=0.185 Sum_probs=144.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~ 70 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ--A---LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDITRLK 70 (222)
T ss_pred CEEEEeeEEEecCCCe--E---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccCC
Confidence 4899999999943222 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+..+ ++.+|+.++.... .....+..+++.++++.+++.+
T Consensus 71 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 129 (222)
T PRK10908 71 -NREVPFLRRQIGMIFQDHHLLMDR----------TVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLD--------- 129 (222)
T ss_pred -hhHHHHHHhheEEEecCccccccc----------cHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 000011234567777776543332 3334443322111 1123344567788999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 130 --------KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred --------hhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5788
Q ss_pred ccccEEEEEecCCeEee
Q 019066 283 SLTDRARIRTYLGELLG 299 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~ 299 (346)
.+||++++ |++|+++.
T Consensus 202 ~~~d~i~~-l~~G~i~~ 217 (222)
T PRK10908 202 RRSYRMLT-LSDGHLHG 217 (222)
T ss_pred HhCCEEEE-EECCEEcc
Confidence 89999965 99999865
No 197
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=290.12 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=151.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 2 ~l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (255)
T PRK11231 2 TLRTENLTVGYGTKR---I---LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPISMLS 70 (255)
T ss_pred EEEEEeEEEEECCEE---E---EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhHHCC
Confidence 589999999997532 4 777999999999999999999999999999999999 99999999998864110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
. ...++.++|++|+...+.++ +.+|+ .++... ..........+++.++++.+++.+
T Consensus 71 ---~-~~~~~~i~~~~q~~~~~~~~tv~~~i-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 130 (255)
T PRK11231 71 ---S-RQLARRLALLPQHHLTPEGITVRELV-----------AYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH----- 130 (255)
T ss_pred ---H-HHHhhheEEecccCCCCCCccHHHHH-----------HhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----
Confidence 0 01123467777776544332 44443 332110 000112334567888999999976
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++||
T Consensus 131 ------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 131 ------------LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred ------------HHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46889999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|+++..|++++++.
T Consensus 199 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 199 NQASRYCDHLVV-LANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCEEEE-EECCeEEEEcCHHHhcC
Confidence 568889999975 99999999998887753
No 198
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.9e-37 Score=283.16 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=141.2
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA---LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLKL 72 (228)
T ss_pred CeEEEeeeEeccCCCcceee---ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccc
Confidence 478999999997541 0124 667999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHH-HHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNR-MRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~ 225 (346)
. .......++.++|++|+.. .+..+ ++.+|+.++.............++ +.++++.+++...
T Consensus 73 ~-~~~~~~~~~~i~~~~q~~~~~~~~~~----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---- 137 (228)
T cd03257 73 S-RRLRKIRRKEIQMVFQDPMSSLNPRM----------TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE---- 137 (228)
T ss_pred c-hhhHHHhhccEEEEecCchhhcCCcC----------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChh----
Confidence 0 0000112345677777752 22222 333443332211111111122222 3578899998531
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 138 ------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 138 ------------VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred ------------HhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 35888999999999999999999 999999984 689999999
Q ss_pred -hhhhccccEEEEEecCCeEeecC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g 301 (346)
+.+..+||++++ |++|++++.|
T Consensus 206 ~~~~~~~~d~i~~-l~~G~i~~~g 228 (228)
T cd03257 206 LGVVAKIADRVAV-MYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCeEEE-EeCCEEEecC
Confidence 567789999964 9999998764
No 199
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=292.42 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=154.7
Q ss_pred CcEEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 69 SLTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..|+++||+++|++... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA---LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYAIP 76 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence 35899999999975420 114 777999999999999999999999999999999999 99999999998864
Q ss_pred Ccc-cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTY-FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~-~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
... ........++.++|++|++.. .++..++.+|+.++.... ........+++.++++.+++...
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~---------~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~---- 142 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEY---------QLFQETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPED---- 142 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcch---------hhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh----
Confidence 100 000011113356677666421 122235566665543211 11233445677889999999531
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 143 ------------~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 143 ------------YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45888999999999999999999 999999984 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+.+.++||++++ |++|++++.|++++++..+
T Consensus 211 ~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 242 (289)
T PRK13645 211 MDQVLRIADEVIV-MHEGKVISIGSPFEIFSNQ 242 (289)
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 567889999965 9999999999988876543
No 200
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=291.87 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=152.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 73 (265)
T PRK10253 5 VARLRGEQLTLGYGKYT---V---AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQH 73 (265)
T ss_pred ccEEEEEEEEEEECCEE---E---eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhhh
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
.. . ...++.++|++|+...+... ++.+|+.++.... ........++++.++++.+++.+
T Consensus 74 ~~---~-~~~~~~i~~v~q~~~~~~~~----------tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 135 (265)
T PRK10253 74 YA---S-KEVARRIGLLAQNATTPGDI----------TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH---- 135 (265)
T ss_pred CC---H-HHHhhheEEeeccCcCCCCC----------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----
Confidence 00 0 01123567777776544332 2333333221000 00011234567889999999976
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++||
T Consensus 136 -------------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH 202 (265)
T PRK10253 136 -------------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202 (265)
T ss_pred -------------HhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46889999999999999999999 999999983 689999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|++++.|++++++.
T Consensus 203 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 203 DLNQACRYASHLIA-LREGKIVAQGAPKEIVT 233 (265)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCCHHHHhh
Confidence 568899999965 99999999999887654
No 201
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-37 Score=290.36 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=152.0
Q ss_pred EEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|++... ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA---LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLITST 74 (280)
T ss_pred EEEEEEEEEcCCCCccccce---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccc
Confidence 899999999975320 124 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.........++.++|++|+... .++..++.+|+.++.... .......++++.++++.+++.+.
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------- 137 (280)
T PRK13649 75 SKNKDIKQIRKKVGLVFQFPES---------QLFEETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISES------- 137 (280)
T ss_pred ccccCHHHHHhheEEEeeChhh---------hhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh-------
Confidence 0000001123356777776410 111123444444332111 11233445678889999999742
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 138 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~ 208 (280)
T PRK13649 138 ---------LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDV 208 (280)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 35788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
..+||++++ |++|++++.|++++++..
T Consensus 209 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 209 ANYADFVYV-LEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 889999965 999999999999888664
No 202
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=291.07 Aligned_cols=199 Identities=14% Similarity=0.173 Sum_probs=153.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.....+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~---l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~~- 74 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQ---LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLTAE- 74 (277)
T ss_pred eEEEEEEEEEcCCCCcCee---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECCcC-
Confidence 6999999999974321124 777999999999999999999999999999999999 9999999999987511
Q ss_pred cccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|++. .+.. .++.+|+.++.... ........+++.++++.+++.+
T Consensus 75 ---~~~~~~~~i~~v~q~~~~~~~~----------~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 132 (277)
T PRK13642 75 ---NVWNLRRKIGMVFQNPDNQFVG----------ATVEDDVAFGMENQ-GIPREEMIKRVDEALLAVNMLD-------- 132 (277)
T ss_pred ---CHHHHhcceEEEEECHHHhhcc----------CCHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHh--------
Confidence 00111345677777652 2222 24444444332211 1123444567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
+.++++.+|||||+||++||||| ||||++||. |.|+|++|| +.
T Consensus 133 ---------~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 133 ---------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred ---------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 46888999999999999999999 999999983 789999999 45
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+. .||++++ |++|++++.|++++++..+
T Consensus 204 ~~-~~d~i~~-l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 204 AA-SSDRILV-MKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HH-hCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 55 6999965 9999999999999887653
No 203
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.4e-37 Score=281.47 Aligned_cols=185 Identities=19% Similarity=0.205 Sum_probs=143.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~---~---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (213)
T cd03262 1 IEIKNLHKSFGDFH---V---LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLTDD-- 67 (213)
T ss_pred CEEEEEEEEECCeE---e---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCcc--
Confidence 57899999997632 4 667999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+..+ +.+|+.+.... .........++++.++++.+++.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~l~~--------- 127 (213)
T cd03262 68 KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK-----------VKGMSKAEAEERALELLEKVGLAD--------- 127 (213)
T ss_pred chhHHHHHhcceEEecccccCCCCcHHHHHHhHHHH-----------hcCCCHHHHHHHHHHHHHHcCCHh---------
Confidence 001111234677888876655433 55554432211 011122344567888999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
.+++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 128 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 128 --------KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAR 199 (213)
T ss_pred --------HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 46888999999999999999999 999999984 789999999 5688
Q ss_pred ccccEEEEEecCCeE
Q 019066 283 SLTDRARIRTYLGEL 297 (346)
Q Consensus 283 ~~aDri~v~l~~G~i 297 (346)
++||++++ |++|++
T Consensus 200 ~~~d~i~~-l~~g~i 213 (213)
T cd03262 200 EVADRVIF-MDDGRI 213 (213)
T ss_pred HhCCEEEE-EeCCcC
Confidence 89999975 999874
No 204
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=289.02 Aligned_cols=195 Identities=13% Similarity=0.087 Sum_probs=150.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~~~~ 70 (258)
T PRK13548 2 MLEARNLSVRLGGRT---L---LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLADWS 70 (258)
T ss_pred eEEEEeEEEEeCCee---e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcccCC
Confidence 689999999997633 3 777999999999999999999999999999999999 99999999998864100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ...++.++|++|+...+..+ ++.+|+.++..... ......++++.++++.+++.+
T Consensus 71 ---~-~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~--------- 126 (258)
T PRK13548 71 ---P-AELARRRAVLPQHSSLSFPF----------TVEEVVAMGRAPHG-LSRAEDDALVAAALAQVDLAH--------- 126 (258)
T ss_pred ---H-HHhhhheEEEccCCcCCCCC----------CHHHHHHhhhcccC-CCcHHHHHHHHHHHHHcCCHh---------
Confidence 0 01123456777765433222 34444443321111 112334567888999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------------CccccCCCC-----------------CceEEEEe
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVVVT 277 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~-----------------g~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. +.|||++|
T Consensus 127 --------~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 198 (258)
T PRK13548 127 --------LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL 198 (258)
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 46888999999999999999976 999999884 68999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 199 H~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 199 HDLNLAARYADRIVL-LHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCHHHHHHhcCEEEE-EECCEEEeeCCHHHHhC
Confidence 9 567889999965 99999999998887754
No 205
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=7.8e-38 Score=298.42 Aligned_cols=178 Identities=12% Similarity=0.129 Sum_probs=144.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... . ...++.++|++|+...+
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~----~-~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVVRE----P-RKVRRSIGIVPQYASVD 78 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccC----H-HHHHhhcEEecCCCCCC
Confidence 777999999999999999999999999999999999 9999999999987510 0 11134578888877665
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
..+ +.+|+.++.. .. .......++++.++++.+++.+ ..++++.+|||||
T Consensus 79 ~~~tv~e~l~~~~~-----------~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG~ 129 (302)
T TIGR01188 79 EDLTGRENLEMMGR-----------LY-GLPKDEAEERAEELLELFELGE-----------------AADRPVGTYSGGM 129 (302)
T ss_pred CCCcHHHHHHHHHH-----------Hc-CCCHHHHHHHHHHHHHHcCChh-----------------HhCCchhhCCHHH
Confidence 554 5665543221 11 1123445667889999999987 4688999999999
Q ss_pred HHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCc
Q 019066 251 QYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 251 rQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
|||++||||| ||||++||+ |.|||++|| +.+.++||++++ |++|+++..|++
T Consensus 130 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~-l~~G~i~~~g~~ 208 (302)
T TIGR01188 130 RRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAI-IDHGRIIAEGTP 208 (302)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE-EECCEEEEECCH
Confidence 9999999999 999999984 799999999 678899999975 999999999999
Q ss_pred cccccC
Q 019066 304 KQIFDI 309 (346)
Q Consensus 304 ~~l~~~ 309 (346)
+++...
T Consensus 209 ~~l~~~ 214 (302)
T TIGR01188 209 EELKRR 214 (302)
T ss_pred HHHHHh
Confidence 887653
No 206
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.5e-37 Score=285.28 Aligned_cols=208 Identities=13% Similarity=0.067 Sum_probs=151.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc--cCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~--~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~~ 69 (243)
T TIGR01978 1 LKIKDLHVSVEDKE---I---LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-----VTSGTILFKGQDLLEL 69 (243)
T ss_pred CeEeeEEEEECCEE---E---EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCcceEEECCEecCCC
Confidence 57999999997532 4 77799999999999999999999999999999994 6 8999999999987511
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....+..++|++|+...+.++ +.+++.+...... . +.. ..........+++.++++.+++.+.
T Consensus 70 ~---~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~l~~~~l~~~------ 135 (243)
T TIGR01978 70 E---PDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR-S--ARG--EEPLDLLDFLKLLKAKLALLGMDEE------ 135 (243)
T ss_pred C---HHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh-c--ccc--cccccHHHHHHHHHHHHHHcCCchh------
Confidence 1 0011123467778877665554 5555443221100 0 000 0001123345678899999999742
Q ss_pred eeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++.+. +||||||||++||||| ||||++||. |.|||++|| +
T Consensus 136 ----------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 136 ----------FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred ----------hcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 2466776 5999999999999999 999999984 789999999 5
Q ss_pred hhhcc-ccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 280 DLLSL-TDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 280 ~~~~~-aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
.+..+ ||++++ |++|++++.|+++++.....+.|
T Consensus 206 ~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~ 240 (243)
T TIGR01978 206 LLNYIKPDYVHV-LLDGRIVKSGDVELAKELEEKGY 240 (243)
T ss_pred HHHhhcCCeEEE-EeCCEEEEecCHHHhccccccCc
Confidence 67777 899964 99999999999876544333333
No 207
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-37 Score=281.41 Aligned_cols=200 Identities=15% Similarity=0.194 Sum_probs=157.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---i---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--- 66 (232)
T cd03300 1 IELENVSKFYGGFV---A---LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITN--- 66 (232)
T ss_pred CEEEeEEEEeCCee---e---eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 57899999997642 4 777999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.+++++|+...+.++ +.+|+.+ +.... .......++++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~t~~~nl~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (232)
T cd03300 67 ---LPPHKRPVNTVFQNYALFPHLTVFENIAF-----------GLRLK-KLPKAEIKERVAEALDLVQLEG--------- 122 (232)
T ss_pred ---CChhhcceEEEecccccCCCCcHHHHHHH-----------HHHhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 111234567888776655443 5555432 21111 1123345567889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
.+++.+.+||+||+||++||||| ||||++||. |.|+|++|| ..+
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 123 --------YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999983 689999999 467
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
..+||++++ |++|++++.|++++++..+.++.++.
T Consensus 195 ~~~~d~i~~-l~~G~~~~~~~~~~~~~~~~~~~~~~ 229 (232)
T cd03300 195 LTMSDRIAV-MNKGKIQQIGTPEEIYEEPANRFVAD 229 (232)
T ss_pred HHhcCEEEE-EECCEEEecCCHHHHHhCCchHHHHH
Confidence 889999965 99999999999988877655444333
No 208
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=289.89 Aligned_cols=218 Identities=15% Similarity=0.190 Sum_probs=159.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~~~~---~---l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFL---A---LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeCCeE---E---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 55899999999997532 4 77799999999999999999999999999999998621111268999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . .....++.++|++|+...+.. ++.+|+.++..... . ....++.+.++++.+++...+.
T Consensus 92 ~~-~-~~~~~~~~i~~v~q~~~l~~~-----------tv~~nl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l~---- 152 (274)
T PRK14265 92 SQ-I-NSVKLRRQVGMVFQRPNPFPK-----------SIYENIAFAPRANG-Y-KGNLDELVEDSLRRAAIWEEVK---- 152 (274)
T ss_pred cc-c-hhHHHhhcEEEEccCCccccc-----------cHHHHHHhHHHhcC-c-hHHHHHHHHHHHHHcccchhhH----
Confidence 00 0 011123456777776544322 33444443321111 1 1123345677888888753220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 153 ---------~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~ 223 (274)
T PRK14265 153 ---------DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQA 223 (274)
T ss_pred ---------HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 789999999 578
Q ss_pred hccccEEEEEec---------CCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~---------~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++|||+++ |+ +|++++.|++++++..+.+++++.++.
T Consensus 224 ~~~~d~i~~-l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~ 270 (274)
T PRK14265 224 SRVADWTAF-FNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYIS 270 (274)
T ss_pred HHhCCEEEE-EecccccccccCceEEEeCCHHHHHhCCCCHHHHHHhh
Confidence 899999975 87 899999999999998888777665543
No 209
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-37 Score=281.01 Aligned_cols=196 Identities=17% Similarity=0.263 Sum_probs=155.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 l~~~~l~~~~~~~----~---l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~--- 65 (235)
T cd03299 1 LKVENLSKDWKEF----K---LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITN--- 65 (235)
T ss_pred CeeEeEEEEeCCc----e---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCc---
Confidence 5789999999752 3 777999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.+++++|+...+..+ +.+|+. ++.... ........+++.++++.+++.+
T Consensus 66 ---~~~~~~~i~~~~q~~~~~~~~t~~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 121 (235)
T cd03299 66 ---LPPEKRDISYVPQNYALFPHMTVYKNIA-----------YGLKKR-KVDKKEIERKVLEIAEMLGIDH--------- 121 (235)
T ss_pred ---CChhHcCEEEEeecCccCCCccHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 111234667888776555333 444443 222111 1123445667889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 122 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~ 193 (235)
T cd03299 122 --------LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193 (235)
T ss_pred --------HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 46888999999999999999999 999999983 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
..+||++++ |++|++++.|+++++...+..+.
T Consensus 194 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~ 225 (235)
T cd03299 194 WALADKVAI-MLNGKLIQVGKPEEVFKKPKNEF 225 (235)
T ss_pred HHhCCEEEE-EECCEEEEecCHHHHHhCcccHH
Confidence 889999975 99999999999988877654443
No 210
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-38 Score=275.59 Aligned_cols=196 Identities=16% Similarity=0.170 Sum_probs=163.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+|+|+... + |+++|++|++|.+++||||||||||||+.+++++.+ .++|+|+++|.++..
T Consensus 1 MI~i~nv~K~y~~~~---v---l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~~-- 67 (252)
T COG4604 1 MITIENVSKSYGTKV---V---LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELTS-- 67 (252)
T ss_pred CeeehhhhHhhCCEE---e---eccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeeccc--
Confidence 689999999998753 3 677999999999999999999999999999999999 999999999999861
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcch-hhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+.-++.........|.-.+.. .+|++-+.||. ...++....+.+..+.++++.++|.+
T Consensus 68 -------------~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~------- 127 (252)
T COG4604 68 -------------TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED------- 127 (252)
T ss_pred -------------CChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-------
Confidence 222222222223333333333 38888888884 33445556788899999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.++|..+||||||||+-||..| |||..+||- |+|+++|-| +
T Consensus 128 ----------l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 128 ----------LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred ----------hHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 67999999999999999999999 999999983 999999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++..++|+|+ -|++|+++..|++++++..
T Consensus 198 fAS~YsD~IV-AlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 198 FASCYSDHIV-ALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred HHHhhhhhee-eecCCEEEecCCHHHhcCH
Confidence 8999999995 5999999999999999865
No 211
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.6e-37 Score=346.28 Aligned_cols=218 Identities=10% Similarity=0.106 Sum_probs=161.0
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+..++.++++.+++.... ....|+++||+|+|+......+ |+|+||+|++||++||+||||||||||++
T Consensus 353 ~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 429 (1466)
T PTZ00265 353 EATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI---YKDLNFTLTEGKTYAFVGESGCGKSTILK 429 (1466)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce---eccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 4456788888766543211 1125999999999975422225 66699999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEE-CceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc-
Q 019066 121 RISKVFENDKFASERAQVTY-NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR- 198 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~-~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~- 198 (346)
+|+|+|+ |++|+|++ +|.++... .....|+.+++++|++..|.+ ++.+|+.++.....
T Consensus 430 lL~gl~~-----p~~G~I~i~~g~~i~~~----~~~~lr~~Ig~V~Q~~~LF~~-----------TI~eNI~~g~~~~~~ 489 (1466)
T PTZ00265 430 LIERLYD-----PTEGDIIINDSHNLKDI----NLKWWRSKIGVVSQDPLLFSN-----------SIKNNIKYSLYSLKD 489 (1466)
T ss_pred HHHHhcc-----CCCCeEEEeCCcchhhC----CHHHHHHhccEecccccchhc-----------cHHHHHHhcCCCccc
Confidence 9999999 99999999 56776410 001113455666666555544 44445444321000
Q ss_pred -------------------------------------------------CCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 199 -------------------------------------------------RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 199 -------------------------------------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++++.++++.+++++++..+|+||
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~ 569 (1466)
T PTZ00265 490 LEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKY 569 (1466)
T ss_pred cchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCcccc
Confidence 0001123467889999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech-hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG-DLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~-~~~ 282 (346)
+|.||++ +.+||||||||++||||| |||||+||. |+|+|+|||+ ...
T Consensus 570 dT~vg~~------g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i 643 (1466)
T PTZ00265 570 ETLVGSN------ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI 643 (1466)
T ss_pred CceeCCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence 9999998 459999999999999999 999999883 6899999992 334
Q ss_pred ccccEEEEEecCC
Q 019066 283 SLTDRARIRTYLG 295 (346)
Q Consensus 283 ~~aDri~v~l~~G 295 (346)
+.||+|++ |++|
T Consensus 644 ~~aD~Iiv-l~~g 655 (1466)
T PTZ00265 644 RYANTIFV-LSNR 655 (1466)
T ss_pred HhCCEEEE-EeCC
Confidence 67999965 9886
No 212
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.5e-37 Score=282.36 Aligned_cols=189 Identities=13% Similarity=0.152 Sum_probs=144.3
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 68 (230)
T TIGR03410 1 LEVSNLNVYYGQSH---I---LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITKLP- 68 (230)
T ss_pred CEEEeEEEEeCCeE---E---ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCCCC-
Confidence 57999999997532 4 677999999999999999999999999999999999 99999999998875110
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcC-CCcccccccce
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNF 228 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+..+ +.+|+ .++..... ....+.+.++++.++ +..
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~tv~~~l-----------~~~~~~~~----~~~~~~~~~~l~~~~~l~~-------- 123 (230)
T TIGR03410 69 --PHERARAGIAYVPQGREIFPRLTVEENL-----------LTGLAALP----RRSRKIPDEIYELFPVLKE-------- 123 (230)
T ss_pred --HHHHHHhCeEEeccCCcccCCCcHHHHH-----------HHHHHhcC----cchHHHHHHHHHHHHhHHH--------
Confidence 0011134567777776555432 44444 33221110 111234566677776 444
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.
T Consensus 124 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 124 ---------MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194 (230)
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 45888999999999999999999 999999984 689999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCcccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+..+||++++ |++|++++.|+++++
T Consensus 195 ~~~~~d~v~~-l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 195 ARELADRYYV-MERGRVVASGAGDEL 219 (230)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHc
Confidence 8889999975 999999999998776
No 213
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.5e-37 Score=288.02 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=150.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~- 69 (256)
T TIGR03873 2 LRLSRVSWSAGGRL---I---VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLHGLS- 69 (256)
T ss_pred ceEEeEEEEECCEE---E---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcccCC-
Confidence 68999999997532 4 777999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ...++.++|++|+...+..+ +.+|+.+..... ............+++.++++.+++.+
T Consensus 70 --~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 129 (256)
T TIGR03873 70 --R-RARARRVALVEQDSDTAVPLTVRDVVALGRIPH--------RSLWAGDSPHDAAVVDRALARTELSH--------- 129 (256)
T ss_pred --H-HHHhhheEEecccCccCCCCCHHHHHHhcchhh--------hhhccCCCHHHHHHHHHHHHHcCcHh---------
Confidence 0 11123467777775433322 455543321100 00000111234467889999999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 130 --------LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA 201 (256)
T ss_pred --------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 46889999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeEeecCCcccccc
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.+||++++ |++|++++.|++++++.
T Consensus 202 ~~~d~i~~-l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 202 SYCDHVVV-LDGGRVVAAGPPREVLT 226 (256)
T ss_pred HhCCEEEE-EeCCCEEEecCHHHhhC
Confidence 89999965 99999999998877643
No 214
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-37 Score=287.12 Aligned_cols=215 Identities=17% Similarity=0.194 Sum_probs=159.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.-...
T Consensus 8 ~~~i~~~~~~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 8 EDVFNISRLYLYINDKA---I---LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVLYF 76 (257)
T ss_pred hhheeeeeEEEecCCce---e---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEEEC
Confidence 56899999999997643 4 677999999999999999999999999999999999 999877777642110
Q ss_pred cccccccc--cCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYT--IPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~--~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
........ ..++.++|++|+...+.++ +.+|+. ++..........+.++++.++++.+++.+.+.
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 144 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA-----------YPLKSHGIKEKREIKKIVEECLRKVGLWKEVY- 144 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHH-----------HHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-
Confidence 00000001 1134567777766555443 455443 32211111122345567889999999964210
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-- 278 (346)
...++.+..||+|||||++||||| ||||++||. +.|+|++||
T Consensus 145 ------------~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~ 212 (257)
T PRK14246 145 ------------DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNP 212 (257)
T ss_pred ------------hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCH
Confidence 034778999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+.+..+||++++ |++|++++.|++++++..|.+++++.|
T Consensus 213 ~~~~~~~d~v~~-l~~g~i~~~g~~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 213 QQVARVADYVAF-LYNGELVEWGSSNEIFTSPKNELTEKY 251 (257)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCcHHHHHH
Confidence 567789999965 999999999999999988877776554
No 215
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=7.5e-37 Score=286.92 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=158.7
Q ss_pred CcEEEeeeEEEeCC--------CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 69 SLTDAKNKILSYTP--------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 69 ~~l~~~~l~~~y~~--------~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
++|+++||++.|+. +.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~--i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~~ 71 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQT--V---LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVSW 71 (268)
T ss_pred ceEEEeceEEEecCCccccccCcee--e---EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE
Confidence 46999999999973 222 4 667999999999999999999999999999999999 99999999
Q ss_pred CceeCCCcccccccccCCCCccceeecccc-c-ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcC
Q 019066 141 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-L-SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 217 (346)
Q Consensus 141 ~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~-~-~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (346)
+|+++.... .......++.++|++|+... + ... +.+++. +...............++.++++.++
T Consensus 72 ~g~~~~~~~-~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~-----------~~~~~~~~~~~~~~~~~~~~~l~~~g 139 (268)
T PRK10419 72 RGEPLAKLN-RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR-----------EPLRHLLSLDKAERLARASEMLRAVD 139 (268)
T ss_pred CCEeccccC-hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHH-----------HHHHhhccCCHHHHHHHHHHHHHHcC
Confidence 999874110 00111123467788887531 2 112 333332 21110111123344567889999999
Q ss_pred CCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cc
Q 019066 218 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 271 (346)
Q Consensus 218 l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ 271 (346)
+... ..++++.+|||||+||++||||| ||||++||. +.
T Consensus 140 l~~~----------------~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 203 (268)
T PRK10419 140 LDDS----------------VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203 (268)
T ss_pred CChh----------------HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc
Confidence 9732 35788999999999999999999 999999983 78
Q ss_pred eEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 272 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 272 tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|+|++|| +.+..+||++++ |++|++++.|++++++. +.++++..++.
T Consensus 204 tiiivsH~~~~i~~~~d~i~~-l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 252 (268)
T PRK10419 204 ACLFITHDLRLVERFCQRVMV-MDNGQIVETQPVGDKLT-FSSPAGRVLQN 252 (268)
T ss_pred EEEEEECCHHHHHHhCCEEEE-EECCEEeeeCChhhccC-CCCHHHHHHHH
Confidence 9999999 578889999975 99999999999999874 56666655554
No 216
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9.9e-37 Score=278.96 Aligned_cols=194 Identities=18% Similarity=0.179 Sum_probs=146.1
Q ss_pred CCcEEEeeeEEEeCCCCc-eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~-~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||+++|+++.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~ 75 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSI---LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQPLH 75 (228)
T ss_pred CceEEEeeeEEEccCCCcceEE---EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEEcc
Confidence 457999999999975321 124 677999999999999999999999999999999999 99999999999875
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
...........++.++|++|+...+..+ +.+|+.+. .... .......++++.++++.+++.+
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~~l~~----- 138 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELP-----------ALLR-GESSRQSRNGAKALLEQLGLGK----- 138 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHH-----------HHhc-CCCHHHHHHHHHHHHHHcCCHh-----
Confidence 1110000011123567888776555443 55554332 1111 1123445678899999999986
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 139 ------------~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 139 ------------RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred ------------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45888999999999999999999 999999983 689999999
Q ss_pred -hhhhccccEEEEEecCCeEeec
Q 019066 279 -GDLLSLTDRARIRTYLGELLGI 300 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~ 300 (346)
+.+ ..||++++ |++|++++.
T Consensus 207 ~~~~-~~~d~i~~-l~~g~i~~~ 227 (228)
T PRK10584 207 LQLA-ARCDRRLR-LVNGQLQEE 227 (228)
T ss_pred HHHH-HhCCEEEE-EECCEEEec
Confidence 445 45999965 999999764
No 217
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=275.59 Aligned_cols=183 Identities=17% Similarity=0.191 Sum_probs=142.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++. ..++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~--------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~--- 64 (211)
T cd03298 1 VRLDKIRFSYGEQ--------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVTA--- 64 (211)
T ss_pred CEEEeEEEEeCCE--------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCc---
Confidence 5799999999642 225999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
....++.++|++|+...+.++ ++.+|+.++...... .....++++.++++.+++.+
T Consensus 65 ---~~~~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~---------- 120 (211)
T cd03298 65 ---APPADRPVSMLFQENNLFAHL----------TVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAG---------- 120 (211)
T ss_pred ---CCHhHccEEEEecccccCCCC----------cHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHH----------
Confidence 111134567777776544332 344444433211000 11234567889999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 121 -------~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 121 -------LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred -------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5688
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
.+||++++ |++|++++.|
T Consensus 194 ~~~d~i~~-l~~G~i~~~~ 211 (211)
T cd03298 194 RLAQRVVF-LDNGRIAAQG 211 (211)
T ss_pred hhhCEEEE-EECCEEeecC
Confidence 89999965 9999998764
No 218
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.1e-37 Score=278.92 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=137.5
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++||+++|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~~~~l~~~~~~~~~-~i---l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~--- 68 (211)
T cd03225 1 ELKNLSFSYPDGAR-PA---LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLTKL--- 68 (211)
T ss_pred CceeEEEecCCCCe-ee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcccC---
Confidence 47899999975211 14 677999999999999999999999999999999999 9999999999887511
Q ss_pred cccccCCCCccceeecccc-cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 152 QEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~-~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++|+... +... ++.+|+.++.... .......++++.++++.+++.+
T Consensus 69 -~~~~~~~~i~~~~q~~~~~~~~~----------t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 126 (211)
T cd03225 69 -SLKELRRKVGLVFQNPDDQFFGP----------TVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEG---------- 126 (211)
T ss_pred -CHHHHHhhceEEecChhhhcCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHh----------
Confidence 001113456777776531 2221 3334443322111 1122344567888999999986
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+..
T Consensus 127 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 127 -------LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred -------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45888999999999999999999 999999984 789999999 56888
Q ss_pred cccEEEEEecCCe
Q 019066 284 LTDRARIRTYLGE 296 (346)
Q Consensus 284 ~aDri~v~l~~G~ 296 (346)
+||++++ |++|+
T Consensus 200 ~~d~i~~-l~~G~ 211 (211)
T cd03225 200 LADRVIV-LEDGK 211 (211)
T ss_pred hCCEEEE-EeCCC
Confidence 8999964 98874
No 219
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=273.75 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=155.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+.+|++++..++.. |+++||++++||+++|+||||||||||+|.|+|-+. |++|++.++|.++.. +
T Consensus 1 mi~a~nls~~~~Gr~l------l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~~-~ 68 (259)
T COG4559 1 MIRAENLSYSLAGRRL------LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLNS-W 68 (259)
T ss_pred CeeeeeeEEEeeccee------ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChhh-C
Confidence 5899999999877653 777999999999999999999999999999999999 999999999998751 1
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.+.+ +. ++.+..+|+.... |+.+|.+-+.+|...++. ....+..+.+.++|..+++..
T Consensus 69 ~~~~--lA-~~raVlpQ~s~la----------FpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~-------- 127 (259)
T COG4559 69 PPEE--LA-RHRAVLPQNSSLA----------FPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG-------- 127 (259)
T ss_pred CHHH--HH-HHhhhcccCcccc----------cceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh--------
Confidence 1111 11 1124445544332 334566666666654433 222345556788999999988
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------------CccccCCCC----------------CceEEEEe
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~----------------g~tviiiT 277 (346)
+..+...+|||||||||.+||+| |||||+||- |..|+.|-
T Consensus 128 ---------la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VL 198 (259)
T COG4559 128 ---------LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVL 198 (259)
T ss_pred ---------hhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 56777889999999999999999 999999983 88999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
| +.+..+||||+ +|++||++..|++++++..
T Consensus 199 HDLNLAA~YaDriv-ll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 199 HDLNLAAQYADRIV-LLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred ccchHHHHhhheee-eeeCCeEeecCCHHHhcCH
Confidence 9 68999999996 5999999999999998764
No 220
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.3e-36 Score=283.05 Aligned_cols=206 Identities=15% Similarity=0.161 Sum_probs=156.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC----CCceEEECceeC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVG 145 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p----~~G~I~~~g~~i 145 (346)
+|+++||+++| +. . + |+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-~~-~--i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 4 QIELRNIALQA-AQ-P--L---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-----AGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEEeCeEEEe-cc-c--e---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCcCCEEEECCeec
Confidence 69999999999 32 2 3 777999999999999999999999999999999998 7 999999999987
Q ss_pred CCcccccccccCCCCccceeecccc-cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~-~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
. .....++.++|++|+... +... .++.+++.+...... . ...++++.++++.+++.+..
T Consensus 72 ~------~~~~~~~~i~~v~q~~~~~~~~~---------~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~l~~~~-- 131 (254)
T PRK10418 72 A------PCALRGRKIATIMQNPRSAFNPL---------HTMHTHARETCLALG-K--PADDATLTAALEAVGLENAA-- 131 (254)
T ss_pred c------ccccccceEEEEecCCccccCcc---------ccHHHHHHHHHHHcC-C--ChHHHHHHHHHHHcCCCChh--
Confidence 4 112223467888888642 2110 012222221111111 1 12236788999999997621
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..+++++.+|||||+||++||||| ||||++||. |.|||++||
T Consensus 132 ------------~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH 199 (254)
T PRK10418 132 ------------RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199 (254)
T ss_pred ------------hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 024788999999999999999999 999999983 689999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.+..+||++++ |++|++++.|++++++..+.+++.+.++.
T Consensus 200 ~~~~~~~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 242 (254)
T PRK10418 200 DMGVVARLADDVAV-MSHGRIVEQGDVETLFNAPKHAVTRSLVS 242 (254)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEecCHHHHhhCCCCHHHHHHHH
Confidence 567789999965 99999999999999988776665554443
No 221
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=8.9e-37 Score=277.85 Aligned_cols=190 Identities=18% Similarity=0.184 Sum_probs=141.7
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|+++. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV---LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSKL 72 (221)
T ss_pred CEEEEeeeEEccCCCcceEe---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhc
Confidence 378999999996431 1124 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.........++.++|++|+...+..+ +.+|+.+ ..... ........+++.++++.+++.+
T Consensus 73 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 133 (221)
T TIGR02211 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAM-----------PLLIG-KKSVKEAKERAYEMLEKVGLEH------- 133 (221)
T ss_pred CHhHHHHHHHhcEEEEecccccCCCCcHHHHHHH-----------HHHhc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 10000011124567888776554433 5555433 21111 1112334567889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +
T Consensus 134 ----------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 134 ----------RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45888999999999999999999 999999983 689999999 4
Q ss_pred hhhccccEEEEEecCCeEe
Q 019066 280 DLLSLTDRARIRTYLGELL 298 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv 298 (346)
.+. .||++++ |++|+++
T Consensus 204 ~~~-~~d~v~~-l~~G~i~ 220 (221)
T TIGR02211 204 LAK-KLDRVLE-MKDGQLF 220 (221)
T ss_pred HHh-hcCEEEE-EeCCEec
Confidence 554 4899965 9999986
No 222
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=286.60 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=151.0
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC---CceEEECceeC
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVG 145 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~---~G~I~~~g~~i 145 (346)
++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.++
T Consensus 3 ~~l~~~nl~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ---A---LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-----GDKSAGSHIELLGRTV 71 (262)
T ss_pred cEEEEeeEEEEeCCeE---E---EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCCceEEEECCEec
Confidence 4799999999997533 4 777999999999999999999999999999999998 65 59999999987
Q ss_pred CCcc-cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc-cCCChHHHHHHHHHHHHHcCCCccc
Q 019066 146 DGTY-FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI-RRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 146 ~~~~-~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
.... ........++.++|++|+...+..+ +.+|+.+.... . ...... ........++++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 144 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALG---S--TPFWRTCFSWFTREQKQRALQALTRVGMVH-- 144 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcc---c--ccchhhhcccccHHHHHHHHHHHHHcCCHH--
Confidence 4110 0000111134567777776555433 55554322100 0 000000 00012334567899999999986
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEE
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 276 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviii 276 (346)
..++.+.+||||||||++||||| ||||++||. |.|+|++
T Consensus 145 ---------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~ 209 (262)
T PRK09984 145 ---------------FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209 (262)
T ss_pred ---------------HHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45888999999999999999999 999999984 6899999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
|| +.+..+||++++ |++|++++.|+++++
T Consensus 210 tH~~~~~~~~~d~i~~-l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 210 LHQVDYALRYCERIVA-LRQGHVFYDGSSQQF 240 (262)
T ss_pred eCCHHHHHHhCCEEEE-EECCEEEEeCCHHHh
Confidence 99 467899999975 999999999998775
No 223
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-37 Score=282.80 Aligned_cols=198 Identities=14% Similarity=0.208 Sum_probs=148.6
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~~--~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 70 (229)
T cd03254 3 IEFENVNFSYDEKKP--V---LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIRDI-- 70 (229)
T ss_pred EEEEEEEEecCCCCc--c---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHHHc--
Confidence 799999999974332 3 777999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++| +..++..++.+|+.+.... . ...++.++++.+++......+|+|+.
T Consensus 71 --~~~~~~~~i~~~~q-----------~~~~~~~tv~~~~~~~~~~-----~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 130 (229)
T cd03254 71 --SRKSLRSMIGVVLQ-----------DTFLFSGTIMENIRLGRPN-----A--TDEEVIEAAKEAGAHDFIMKLPNGYD 130 (229)
T ss_pred --CHHHHhhhEEEecC-----------CchhhhhHHHHHHhccCCC-----C--CHHHHHHHHHHhChHHHHHhCccccc
Confidence 00001223444444 4444445677777654221 0 12345566777777665655666666
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+ ++++.+||||||||++||||| ||||++||. +.|+|++|| +.+. .
T Consensus 131 ~~~------~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~ 203 (229)
T cd03254 131 TVL------GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-N 203 (229)
T ss_pred CHh------hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-h
Confidence 543 445789999999999999999 999999983 789999999 4554 5
Q ss_pred ccEEEEEecCCeEeecCCcccccc
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
||++++ |++|++++.|+.++++.
T Consensus 204 ~d~i~~-l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 204 ADKILV-LDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCEEEE-EeCCeEEEeCCHHHHHh
Confidence 999965 99999999988777654
No 224
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-37 Score=284.84 Aligned_cols=215 Identities=17% Similarity=0.202 Sum_probs=157.7
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
-+++||+++|++.. + |+++||+|.+||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++....
T Consensus 6 ~~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~- 78 (251)
T PRK14244 6 ASVKNLNLWYGSKQ---I---LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD- 78 (251)
T ss_pred EEeeeEEEEECCee---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc-
Confidence 47899999997532 4 7779999999999999999999999999999999751111146999999998864110
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+...+.+|+. ++...... ......++.+.++++.+++.+.+.
T Consensus 79 -~~~~~~~~~i~~v~q~~~~~~~tv~~ni~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------ 140 (251)
T PRK14244 79 -TNVVLLRAKVGMVFQKPNPFPKSIYDNVA-----------YGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG------ 140 (251)
T ss_pred -cchHHHhhhEEEEecCcccccCCHHHHHH-----------HHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh------
Confidence 00011234567777776544434444443 22111100 112334566788999999965210
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
..+++.+.+||||||||++||||| ||||++||. ++|+|++|| +.+..
T Consensus 141 -------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 141 -------DRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKK 213 (251)
T ss_pred -------hHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 024678899999999999999999 999999984 799999999 56788
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+|||+++ |++|++++.|++++++..+.+++++.+
T Consensus 214 ~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14244 214 VSDRVAF-FQSGRIVEYNTTQEIFKNPQSSKTKRY 247 (251)
T ss_pred hcCEEEE-EECCEEEEeCCHHHHhcCCCChHHHHh
Confidence 9999965 999999999999999988777665443
No 225
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.3e-37 Score=280.34 Aligned_cols=183 Identities=17% Similarity=0.243 Sum_probs=139.2
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 1 ~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~----- 64 (213)
T cd03235 1 EVEDLTVSYGGHP---V---LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPLE----- 64 (213)
T ss_pred CcccceeEECCEE---e---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccHH-----
Confidence 4789999997532 4 677999999999999999999999999999999999 99999999998763
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc---CCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .++.++|++|+...... +..++.+|+.++..... .......++++.++++.+++.+
T Consensus 65 -~---~~~~i~~v~q~~~~~~~--------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 124 (213)
T cd03235 65 -K---ERKRIGYVPQRRSIDRD--------FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-------- 124 (213)
T ss_pred -H---HHhheEEeccccccccC--------CCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH--------
Confidence 1 13356777777543110 11244455544321100 0112334567889999999986
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 125 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~ 195 (213)
T cd03235 125 ---------LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLV 195 (213)
T ss_pred ---------HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecC
Q 019066 282 LSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g 301 (346)
.++||++++ |++| +++.|
T Consensus 196 ~~~~d~i~~-l~~~-~~~~g 213 (213)
T cd03235 196 LEYFDRVLL-LNRT-VVASG 213 (213)
T ss_pred HHhcCEEEE-EcCc-EeecC
Confidence 889999965 8875 66544
No 226
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.6e-37 Score=284.43 Aligned_cols=200 Identities=12% Similarity=0.113 Sum_probs=144.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|+.+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~~~~-~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 70 (237)
T cd03252 1 ITFEHVRFRYKPDGP-VI---LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLALAD- 70 (237)
T ss_pred CEEEEEEEecCCCCc-cc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehHhcC-
Confidence 578999999965321 14 677999999999999999999999999999999999 99999999998874100
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. ...++.++|++|+ ..++..++.+|+.++... .. ...+.+.++..++.+.+..+|.+++
T Consensus 71 --~-~~~~~~i~~~~q~-----------~~~~~~tv~~nl~~~~~~---~~----~~~~~~~~~~~~~~~~l~~l~~~~~ 129 (237)
T cd03252 71 --P-AWLRRQVGVVLQE-----------NVLFNRSIRDNIALADPG---MS----MERVIEAAKLAGAHDFISELPEGYD 129 (237)
T ss_pred --H-HHHhhcEEEEcCC-----------chhccchHHHHhhccCCC---CC----HHHHHHHHHHcCcHHHHHhCccccc
Confidence 0 0012344555554 333334666676553210 01 1223334444555443333333333
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+. +++++.+||||||||++||||| ||||++||. |.|+|++|| +.+ ..
T Consensus 130 ~~------~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~~ 202 (237)
T cd03252 130 TI------VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-KN 202 (237)
T ss_pred ch------hhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-Hh
Confidence 32 3566889999999999999999 999999984 789999999 455 46
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||++++ |++|++++.|++++++..
T Consensus 203 ~d~v~~-l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 203 ADRIIV-MEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCEEEE-EECCEEEEEcCHHHHHhc
Confidence 999965 999999999999888755
No 227
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-37 Score=267.93 Aligned_cols=188 Identities=16% Similarity=0.212 Sum_probs=157.3
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.++.+++++.+|++... .+ |+|+|++|.+||+++++||||||||||+|+++|+.. |..|+|.++|+.+..
T Consensus 2 ~~l~~~~~sl~y~g~~~-~~---le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~g- 71 (259)
T COG4525 2 CMLNVSHLSLSYEGKPR-SA---LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIEG- 71 (259)
T ss_pred ceeehhheEEecCCcch-hh---hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEeccC-
Confidence 36889999999987542 25 666999999999999999999999999999999999 999999999998861
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. .--+.||||..+++. ++.+|+.|++... ..++.+..+.+.+.+..+||.+
T Consensus 72 -----Pg--------------aergvVFQ~~~LlPWl~~~dNvafgL~l~-Gi~k~~R~~~a~q~l~~VgL~~------- 124 (259)
T COG4525 72 -----PG--------------AERGVVFQNEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVGLEG------- 124 (259)
T ss_pred -----CC--------------ccceeEeccCccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCccc-------
Confidence 11 112345666666676 8889999998754 3456778889999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||+.||||| |||+++||. |+.+++||| +
T Consensus 125 ----------~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 125 ----------AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred ----------ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 45889999999999999999999 999999884 999999999 6
Q ss_pred hhhccccEEEEEec--CCeEeecCCcc
Q 019066 280 DLLSLTDRARIRTY--LGELLGIPPAK 304 (346)
Q Consensus 280 ~~~~~aDri~v~l~--~G~iv~~g~~~ 304 (346)
++.-+++|++ +|. .|+|++.-+++
T Consensus 195 EAlflatrLv-vlsp~pgRvv~~~~~d 220 (259)
T COG4525 195 EALFLATRLV-VLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHhhhheeE-EecCCCceeeEecCCC
Confidence 7888999996 486 57888765543
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=282.09 Aligned_cols=217 Identities=17% Similarity=0.191 Sum_probs=161.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+.......|++|+|.++|.++....
T Consensus 3 ~l~~~~v~~~~~~~~---~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDDAH---I---LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCCeE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 589999999997532 3 7779999999999999999999999999999998641111138999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+.
T Consensus 77 --~~~~~~~~~i~~~~q~~~~~~~-----------t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------ 137 (250)
T PRK14266 77 --VDVVELRKKVGMVFQKPNPFPK-----------SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK------ 137 (250)
T ss_pred --ccHHHHhhheEEEecCCccCcc-----------hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH------
Confidence 0011123456777777544432 344444433211111122345677888999999865321
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
..+++++.+||+|||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 138 -------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 138 -------DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATR 210 (250)
T ss_pred -------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHh
Confidence 135788999999999999999999 999999984 789999999 57888
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+||++++ |++|++++.|+++++...+.+++++.++
T Consensus 211 ~~~~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14266 211 VSKYTSF-FLNGEIIESGLTDQIFINPKDKRTEDYI 245 (250)
T ss_pred hcCEEEE-EECCeEEEeCCHHHHHhCCCChHHHHHh
Confidence 9999965 9999999999999998888877765554
No 229
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=285.03 Aligned_cols=222 Identities=16% Similarity=0.169 Sum_probs=160.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+.++.+..+++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~~---v---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQ---A---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECCee---e---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 45799999999997532 4 77799999999999999999999999999999998721110279999999987631
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
..........++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+.
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~-----------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 152 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPK-----------SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK---- 152 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcc-----------hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh----
Confidence 00000001113356677666544332 344444433211111111233567788888888753210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
+..++.+.+|||||+||++||||| ||||++||. +.|+|+||| +.+
T Consensus 153 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~ 223 (265)
T PRK14252 153 ---------DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA 223 (265)
T ss_pred ---------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH
Confidence 135778899999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|++++.|++++++.++.+++++.++.
T Consensus 224 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 261 (265)
T PRK14252 224 ARVSDYTAY-MYMGELIEFGATDTIFIKPKNKQTEDYIT 261 (265)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHHh
Confidence 889999965 99999999999999988877777665543
No 230
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-36 Score=311.08 Aligned_cols=223 Identities=12% Similarity=0.115 Sum_probs=159.6
Q ss_pred CCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||+++|+++ ....+ |++|||+|++||++||+||||||||||+|+|+|++++....|++|+|.++|+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~---l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTV---VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceee---eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 3579999999999642 11125 6669999999999999999999999999999999982111127999999999875
Q ss_pred CcccccccccCCCCccceeecccc--cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~--~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
...........++.++|++|+... +..+ ++.+++.+........+.....+++.++++.++|.+..
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-- 147 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLH----------TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA-- 147 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchh----------hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--
Confidence 111000011223467888887531 1111 23333322111111122345567889999999997511
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..+++++.+||||||||++||||| ||||++||+ |.|||+|||
T Consensus 148 ------------~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 215 (529)
T PRK15134 148 ------------KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITH 215 (529)
T ss_pred ------------HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 024888999999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+.+..+||||++ |++|++++.|++++++..+.+..++.+
T Consensus 216 d~~~~~~~~dri~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 256 (529)
T PRK15134 216 NLSIVRKLADRVAV-MQNGRCVEQNRAATLFSAPTHPYTQKL 256 (529)
T ss_pred cHHHHHHhcCEEEE-EECCEEEEeCCHHHHhhCCCCHHHHHH
Confidence 568889999965 999999999999998876654444333
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6e-37 Score=313.08 Aligned_cols=216 Identities=12% Similarity=0.166 Sum_probs=161.3
Q ss_pred CCcEEEeeeEEEeCCC--------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE
Q 019066 68 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 139 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~--------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~ 139 (346)
.++|+++||++.|+.+ ....+ |++|||+|++||+++|+||||||||||+|+|+|++ |++|+|+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------~~~G~i~ 343 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVV---VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI------NSQGEIW 343 (529)
T ss_pred CCcccccCcEEEeecCcccccccccccee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC------CCCcEEE
Confidence 4689999999999521 01124 66699999999999999999999999999999997 4689999
Q ss_pred ECceeCCCcccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhcc-CCChHHHHHHHHHHHHHc
Q 019066 140 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKI 216 (346)
Q Consensus 140 ~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~ 216 (346)
++|+++..... ......++.++|++|++. .+..+ ++.+|+.++..... ..+....++++.++++.+
T Consensus 344 ~~g~~i~~~~~-~~~~~~~~~i~~v~q~~~~~l~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (529)
T PRK15134 344 FDGQPLHNLNR-RQLLPVRHRIQVVFQDPNSSLNPRL----------NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV 412 (529)
T ss_pred ECCEEccccch-hhHHHhhhceEEEEeCchhhcCCcc----------cHHHHHHHHHHhccccCChHHHHHHHHHHHHHc
Confidence 99998741100 000011345678888752 22222 33444443321110 012234456788999999
Q ss_pred CCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------C
Q 019066 217 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 270 (346)
Q Consensus 217 ~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g 270 (346)
++.+. ..++++.+||||||||++||||| ||||++||. |
T Consensus 413 ~l~~~----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 476 (529)
T PRK15134 413 GLDPE----------------TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476 (529)
T ss_pred CCCHH----------------HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC
Confidence 99732 35889999999999999999999 999999984 7
Q ss_pred ceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 271 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 271 ~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.|||+||| +.+..+|||+++ |++|++++.|++++++..|.+++++.++.
T Consensus 477 ~tvi~vsHd~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 527 (529)
T PRK15134 477 LAYLFISHDLHVVRALCHQVIV-LRQGEVVEQGDCERVFAAPQQEYTRQLLA 527 (529)
T ss_pred CEEEEEeCCHHHHHHhcCeEEE-EECCEEEEEcCHHHHhcCCCChHHHHHhh
Confidence 89999999 578889999965 99999999999999998888877766553
No 232
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.7e-37 Score=303.59 Aligned_cols=193 Identities=15% Similarity=0.259 Sum_probs=156.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|++|+|++ ++| |++|||+|.+||++||+|+||||||||+|+|+|.|+ |++|+|+++|+.+..
T Consensus 6 ~~ll~~~~i~K~Fgg---V~A---L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~~ 74 (500)
T COG1129 6 PPLLELRGISKSFGG---VKA---LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVAF 74 (500)
T ss_pred cceeeeecceEEcCC---cee---eccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEccC
Confidence 457999999999987 446 555999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
.+ ........|.. |+|++.+++. +|.+|+.++... .+..+....++++.++|+.+++...
T Consensus 75 ~s---p~~A~~~GI~~-----------V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-- 138 (500)
T COG1129 75 SS---PRDALAAGIAT-----------VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-- 138 (500)
T ss_pred CC---HHHHHhCCcEE-----------EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC--
Confidence 11 11111223333 5555555555 666777666432 2345678889999999999999631
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
.+.+..+||.||||.|+||||| |||||+|.. |.++|+|||
T Consensus 139 ---------------~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISH 203 (500)
T COG1129 139 ---------------PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203 (500)
T ss_pred ---------------hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 3677889999999999999999 999999863 999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
+++.++||||.| |++|+.+...+.
T Consensus 204 rl~Ei~~i~DritV-lRDG~~v~~~~~ 229 (500)
T COG1129 204 RLDEVFEIADRITV-LRDGRVVGTRPT 229 (500)
T ss_pred cHHHHHHhcCEEEE-EeCCEEeeeccc
Confidence 789999999975 999999998873
No 233
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.4e-37 Score=315.71 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=152.0
Q ss_pred cEEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.|+++||+|+|++.. ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~---l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFA---LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVSA 408 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCce---eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 599999999997531 1114 666999999999999999999999999999999999 999999999999861
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+...+.+...++|+|++.++..++.+|.. ....++++.++++.+++++++..+|+
T Consensus 409 ---------------~~~~~~~~~i~~v~q~~~lf~~ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~ 463 (555)
T TIGR01194 409 ---------------DSRDDYRDLFSAIFADFHLFDDLIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDG 463 (555)
T ss_pred ---------------CCHHHHHhhCcEEccChhhhhhhhhcccc----------cchhHHHHHHHHHHcCCchhhccccc
Confidence 12223333445566666666666666631 12345678899999999999999999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~ 280 (346)
||+|. ..||||||||++||||| ||||++||. ++|+|+||| ..
T Consensus 464 g~~t~-----------~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 464 GFSTT-----------TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred ccCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 99984 48999999999999999 999999883 789999999 34
Q ss_pred hhccccEEEEEecCCeEeecC
Q 019066 281 LLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g 301 (346)
....||+|+ +|++|++++.-
T Consensus 533 ~~~~~d~i~-~l~~G~i~~~~ 552 (555)
T TIGR01194 533 YFELADQII-KLAAGCIVKDT 552 (555)
T ss_pred HHHhCCEEE-EEECCEEEEec
Confidence 566899996 59999998753
No 234
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=309.16 Aligned_cols=198 Identities=15% Similarity=0.186 Sum_probs=154.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC--CCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p--~~G~I~~~g~~i 145 (346)
.++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|.++
T Consensus 3 ~~~l~~~nl~~~~~~~-~--i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 3 EYLLEMKNITKTFGGV-K--A---LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-----HGTYEGEIIFEGEEL 71 (506)
T ss_pred CceEEEeeeEEEeCCe-E--e---ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEEC
Confidence 3579999999999753 2 4 677999999999999999999999999999999998 6 799999999987
Q ss_pred CCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
... ......++.++|++|+...+..+ ++.+|+.++.... ...+.....+++.++++.+++.+
T Consensus 72 ~~~---~~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 135 (506)
T PRK13549 72 QAS---NIRDTERAGIAIIHQELALVKEL----------SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI--- 135 (506)
T ss_pred CCC---CHHHHHHCCeEEEEeccccCCCC----------cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC---
Confidence 511 01111234567888776544333 3444444432211 01122344567889999999976
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||+ |.|+|+|||
T Consensus 136 --------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH 201 (506)
T PRK13549 136 --------------NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISH 201 (506)
T ss_pred --------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45888999999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
+.+..+||++++ |++|+++..|+++++.
T Consensus 202 ~~~~~~~~~d~v~~-l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 202 KLNEVKAISDTICV-IRDGRHIGTRPAAGMT 231 (506)
T ss_pred cHHHHHHhcCEEEE-EECCEEeeecccccCC
Confidence 578889999965 9999999999987763
No 235
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.8e-36 Score=273.52 Aligned_cols=183 Identities=16% Similarity=0.234 Sum_probs=143.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
++++||++.|+. . ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~~~~~l~~~~~~--~------~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 64 (213)
T TIGR01277 1 LALDKVRYEYEH--L------PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHTG--- 64 (213)
T ss_pred CeEEeeeEEeCC--c------ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEccc---
Confidence 478999999963 2 667999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|++..+.++ +.+|+ .++.... .......++++.++++.+++.+
T Consensus 65 ---~~~~~~~i~~v~q~~~~~~~~t~~en~-----------~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 120 (213)
T TIGR01277 65 ---LAPYQRPVSMLFQENNLFAHLTVRQNI-----------GLGLHPG-LKLNAEQQEKVVDAAQQVGIAD--------- 120 (213)
T ss_pred ---CChhccceEEEeccCccCCCCcHHHHH-----------HhHhhcc-CCccHHHHHHHHHHHHHcCcHH---------
Confidence 111234567777776554433 44444 3321110 0011233567788999999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++.+.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 121 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 121 --------YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA 192 (213)
T ss_pred --------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999983 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCC
Q 019066 282 LSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~ 302 (346)
..+||++++ |++|++++.|+
T Consensus 193 ~~~~d~v~~-l~~g~i~~~~~ 212 (213)
T TIGR01277 193 RAIASQIAV-VSQGKIKVVSD 212 (213)
T ss_pred HhhcCeEEE-EECCeEEEecC
Confidence 789999965 99999999874
No 236
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.5e-37 Score=310.04 Aligned_cols=197 Identities=12% Similarity=0.174 Sum_probs=153.7
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++|++++|++.. + |+|+||+|.+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++...
T Consensus 3 ~~i~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 71 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK---A---LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVTFN 71 (501)
T ss_pred ceEEEeeeEEEeCCeE---E---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCC
Confidence 4799999999997532 4 777999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
. .....++.++|++|+...+..+ ++.+|+.++.... ...+....++++.++++.+++.+
T Consensus 72 ~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 133 (501)
T PRK10762 72 G---PKSSQEAGIGIIHQELNLIPQL----------TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF----- 133 (501)
T ss_pred C---HHHHHhCCEEEEEcchhccCCC----------cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----
Confidence 0 1111233567777765444332 4445554432211 01122344567889999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 134 ------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~ 201 (501)
T PRK10762 134 ------------SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201 (501)
T ss_pred ------------CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45889999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
+.+..+||++++ |++|++++.|+++++.
T Consensus 202 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 202 KEIFEICDDVTV-FRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHhCCEEEE-EeCCEEEEecCcCcCC
Confidence 578899999965 9999999999887663
No 237
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5e-37 Score=343.85 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=160.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+|+||+++|+++.. .+ |+||||+|++||.+||+|+||||||||+++|.|+++ ++|+|++||.|+.
T Consensus 1217 ~I~f~nVs~~Y~~~~~-~v---L~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~--- 1283 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGR-AV---LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWN--- 1283 (1490)
T ss_pred eEEEEEEEEEeCCCCc-ce---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEcc---
Confidence 5999999999975432 24 777999999999999999999999999999999986 4799999999986
Q ss_pred ccccccc--CCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 150 FLQEYTI--PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 150 ~~~~~~~--~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.... .|+.+++++|++..|.+ ++++|+... ....++++.++|+.+++.+.+..+|+
T Consensus 1284 ---~i~~~~lR~~is~IpQdp~LF~G-----------TIR~NLdp~--------~~~tdeei~~aL~~~~L~~~i~~lp~ 1341 (1490)
T TIGR01271 1284 ---SVTLQTWRKAFGVIPQKVFIFSG-----------TFRKNLDPY--------EQWSDEEIWKVAEEVGLKSVIEQFPD 1341 (1490)
T ss_pred ---cCCHHHHHhceEEEeCCCccCcc-----------CHHHHhCcc--------cCCCHHHHHHHHHHCCCHHHHHhCcc
Confidence 2211 14455566666555544 455554311 11235778999999999999999999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
|++|.|+|.|. .||||||||++||||| |||||+||. ++|+|+||| +.+
T Consensus 1342 GLdt~v~e~G~------nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti 1415 (1490)
T TIGR01271 1342 KLDFVLVDGGY------VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415 (1490)
T ss_pred ccccccccCCC------cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999854 8999999999999999 999999984 899999999 345
Q ss_pred hccccEEEEEecCCeEeecCCcccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
. .||||++ |++|+|++.|+|++++.
T Consensus 1416 ~-~~DrIlv-L~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1416 L-ECQQFLV-IEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred H-hCCEEEE-EECCEEEEeCCHHHHHc
Confidence 4 4999965 99999999999999985
No 238
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=289.81 Aligned_cols=231 Identities=18% Similarity=0.195 Sum_probs=162.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|.+||+++|+||||||||||+++|+|++++....|++|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~~~~~---i---L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDH---A---LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CceEEEEEEEEEeCCee---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45799999999997633 4 77799999999999999999999999999999998511111589999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcch--hhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.. . .....++.++|++|+...+...+.+|+.+..... ....-+. ...........++++.++++.+++.+.+.
T Consensus 117 ~~-~-~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-- 191 (305)
T PRK14264 117 DG-V-NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKH-GDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-- 191 (305)
T ss_pred cc-c-cHHHHhhceEEEccCCccccccHHHHHHhHHhhc-ccccccccccccccCchHHHHHHHHHHHHHcCCchhhh--
Confidence 00 0 0111134567777776544434555554321100 0000000 00000011234567888999998854221
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--h
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 279 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~ 279 (346)
+.+++++.+|||||+||++||||| ||||++||. +.|+|++|| +
T Consensus 192 -----------~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~ 260 (305)
T PRK14264 192 -----------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQ 260 (305)
T ss_pred -----------HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 135788999999999999999999 999999984 689999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+..+||+++++|++|++++.|++++++..+.++.+..++.
T Consensus 261 ~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 301 (305)
T PRK14264 261 QAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYIT 301 (305)
T ss_pred HHHHhcCEEEEEecCCEEEEeCCHHHHHhCcccHHHHHHhc
Confidence 77889999754589999999999999988777666555443
No 239
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=283.03 Aligned_cols=215 Identities=19% Similarity=0.205 Sum_probs=158.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.+.+++++++|++.. + |+++||+|++||+++|+|+||||||||+++|+|++++....|++|+|.++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFM---A---VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEEEeCCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 45699999999997532 4 77799999999999999999999999999999999811101279999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
... .....++.++|++|+...+. .++.+|+.++...... .....+++.++++.+++.+.+..
T Consensus 80 ~~~--~~~~~~~~i~~v~q~~~~~~-----------~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~i~~--- 141 (261)
T PRK14263 80 KGV--DPVVVRRYIGMVFQQPNPFS-----------MSIFDNVAFGLRLNRY--KGDLGDRVKHALQGAALWDEVKD--- 141 (261)
T ss_pred ccc--chHhhhhceEEEecCCcccc-----------ccHHHHHHHHHhhcCc--hHHHHHHHHHHHHHcCCchhhhh---
Confidence 100 11112345677777754442 2334444433221111 12345678889999998653210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 142 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i 211 (261)
T PRK14263 142 ----------KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQA 211 (261)
T ss_pred ----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 23567889999999999999999 999999984 789999999 568
Q ss_pred hccccEEEEEec--------CCeEeecCCccccccCCCCCChHH
Q 019066 282 LSLTDRARIRTY--------LGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 282 ~~~aDri~v~l~--------~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
..+|||+++ |+ +|++++.|++++++..+.+++++.
T Consensus 212 ~~~~d~v~~-l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 254 (261)
T PRK14263 212 IRVADTTAF-FSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSD 254 (261)
T ss_pred HHhCCEEEE-EecccccccCCceEEEeCCHHHHHhCCCcHHHHH
Confidence 899999975 85 899999999999988766555443
No 240
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-36 Score=308.97 Aligned_cols=194 Identities=15% Similarity=0.167 Sum_probs=154.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 9 PPLLCARSISKQYSGVE---V---LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCAR 77 (510)
T ss_pred CceEEEEeEEEEeCCce---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 45799999999997533 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... ....++++.++++.+++.+
T Consensus 78 ~~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~------- 132 (510)
T PRK15439 78 LT---PAKAHQLGIYLVPQEPLLFPNL----------SVKENILFGLPK-----RQASMQKMKQLLAALGCQL------- 132 (510)
T ss_pred CC---HHHHHhCCEEEEeccCccCCCC----------cHHHHhhccccc-----chHHHHHHHHHHHHcCCCc-------
Confidence 10 1111223467777775544332 444555443211 1234567889999999986
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ----------~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 202 (510)
T PRK15439 133 ----------DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202 (510)
T ss_pred ----------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCcccccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+..+||++++ |++|++++.|+++++..
T Consensus 203 ~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 203 IRQLADRISV-MRDGTIALSGKTADLST 229 (510)
T ss_pred HHHhCCEEEE-EECCEEEEecChHHcCH
Confidence 8889999965 99999999999887653
No 241
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=307.92 Aligned_cols=198 Identities=15% Similarity=0.170 Sum_probs=154.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 3 TPYISMAGIGKSFGPVH---A---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNK 71 (510)
T ss_pred CceEEEeeeEEEcCCeE---E---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCC
Confidence 35799999999997532 4 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh----ccC--CChHHHHHHHHHHHHHcCCCcc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV----IRR--SDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... ... .+..+..+++.++++.+++.+
T Consensus 72 ~~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~- 137 (510)
T PRK09700 72 LD---HKLAAQLGIGIIYQELSVIDEL----------TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV- 137 (510)
T ss_pred CC---HHHHHHCCeEEEeecccccCCC----------cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-
Confidence 11 1111234567888776544433 333444332210 000 112345577889999999986
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 276 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviii 276 (346)
..++++.+||||||||++||||| ||||++||. |+|||+|
T Consensus 138 ----------------~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv 201 (510)
T PRK09700 138 ----------------DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYI 201 (510)
T ss_pred ----------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46889999999999999999999 999999984 7999999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
|| +.+..+||++++ |++|+++..|++++++
T Consensus 202 sHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 202 SHKLAEIRRICDRYTV-MKDGSSVCSGMVSDVS 233 (510)
T ss_pred eCCHHHHHHhCCEEEE-EECCEEeeecchhhCC
Confidence 99 578889999965 9999999999988764
No 242
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-37 Score=280.97 Aligned_cols=200 Identities=15% Similarity=0.188 Sum_probs=144.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~~~~-~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~-- 69 (234)
T cd03251 1 VEFKNVTFRYPGDGP-PV---LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVRDY-- 69 (234)
T ss_pred CEEEEEEEEeCCCCc-cc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhhhC--
Confidence 579999999976421 14 777999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.... .++.++|++|+...+ ..++.+|+.+.... .. ...+.+.++..++...+..++.++.
T Consensus 70 -~~~~-~~~~i~~~~q~~~~~-----------~~tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~~~~~l~~~l~ 129 (234)
T cd03251 70 -TLAS-LRRQIGLVSQDVFLF-----------NDTVAENIAYGRPG---AT----REEVEEAARAANAHEFIMELPEGYD 129 (234)
T ss_pred -CHHH-HHhhEEEeCCCCeec-----------cccHHHHhhccCCC---CC----HHHHHHHHHHcCcHHHHHhcccCcc
Confidence 0001 133456666664333 33555665543221 01 1223333444444444444444444
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+ ++++.+||||||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 130 ~~~------~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 202 (234)
T cd03251 130 TVI------GERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN- 202 (234)
T ss_pred eee------ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-
Confidence 433 455889999999999999999 999999984 789999999 45655
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||++++ |++|++++.|++++++..
T Consensus 203 ~d~v~~-l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 203 ADRIVV-LEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CCEEEE-ecCCeEeeeCCHHHHHHc
Confidence 999964 999999999998877654
No 243
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.3e-36 Score=275.84 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=144.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~l~~v~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~~~--- 66 (223)
T TIGR03740 1 LETKNLSKRFGKQT---A---VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPWTR--- 66 (223)
T ss_pred CEEEeEEEEECCEE---E---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccc---
Confidence 57899999997532 4 777999999999999999999999999999999999 999999999987641
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. .++.+++++|+...+... +.+|+.+.. .... . .+.++.++++.+++.+
T Consensus 67 ---~--~~~~~~~~~q~~~~~~~~t~~~~~~~~~-----------~~~~-~----~~~~~~~~l~~~~l~~--------- 116 (223)
T TIGR03740 67 ---K--DLHKIGSLIESPPLYENLTARENLKVHT-----------TLLG-L----PDSRIDEVLNIVDLTN--------- 116 (223)
T ss_pred ---c--ccccEEEEcCCCCccccCCHHHHHHHHH-----------HHcC-C----CHHHHHHHHHHcCCcH---------
Confidence 1 123567777776544332 455543321 1111 1 1246778999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++.+.+|||||+||++||||| ||||++||. |.|+|++|| +.+.
T Consensus 117 --------~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 117 --------TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred --------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeEeecCCcc
Q 019066 283 SLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~ 304 (346)
.+|||+++ |++|+++..|++.
T Consensus 189 ~~~d~i~~-l~~g~i~~~~~~~ 209 (223)
T TIGR03740 189 QLADHIGI-ISEGVLGYQGKIN 209 (223)
T ss_pred HhcCEEEE-EeCCEEEEecChh
Confidence 89999965 9999999999865
No 244
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.3e-36 Score=276.61 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=145.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++... .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 l~~~~l~~~~~~~~~-~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~- 72 (220)
T cd03245 3 IEFRNVSFSYPNQEI-PA---LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIRQLD- 72 (220)
T ss_pred EEEEEEEEEcCCCCc-cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhHHCC-
Confidence 789999999975321 14 677999999999999999999999999999999999 99999999998864100
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
... .++.++|++|+.. ++..++.+|+.+.... . ..+++.++++.+++.+....+|+|++
T Consensus 73 --~~~-~~~~i~~~~q~~~-----------~~~~tv~e~l~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~~~~~ 131 (220)
T cd03245 73 --PAD-LRRNIGYVPQDVT-----------LFYGTLRDNITLGAPL-----A--DDERILRAAELAGVTDFVNKHPNGLD 131 (220)
T ss_pred --HHH-HHhhEEEeCCCCc-----------cccchHHHHhhcCCCC-----C--CHHHHHHHHHHcCcHHHHHhcccccc
Confidence 001 1224456555543 3333566666543210 1 12456678888999877777788887
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhccc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 285 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~a 285 (346)
+.+.. .+.+||||||||++||||| ||||++||. +.|+|++|| .....+|
T Consensus 132 ~~~~~------~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 205 (220)
T cd03245 132 LQIGE------RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205 (220)
T ss_pred ceecC------CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 77543 3679999999999999999 999999984 579999999 2234789
Q ss_pred cEEEEEecCCeEeecC
Q 019066 286 DRARIRTYLGELLGIP 301 (346)
Q Consensus 286 Dri~v~l~~G~iv~~g 301 (346)
|++++ |++|++++.|
T Consensus 206 d~v~~-l~~g~i~~~~ 220 (220)
T cd03245 206 DRIIV-MDSGRIVADG 220 (220)
T ss_pred CEEEE-EeCCeEeecC
Confidence 99965 9999998754
No 245
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=284.88 Aligned_cols=196 Identities=12% Similarity=0.028 Sum_probs=148.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC--------CceEEEC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYN 141 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~--------~G~I~~~ 141 (346)
||+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++
T Consensus 1 ml~~~nl~~~~~~~~---i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 1 MLTADHLHVARRHRA---I---LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLN 69 (272)
T ss_pred CeEEEEEEEEECCEe---E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEEC
Confidence 589999999997542 4 777999999999999999999999999999999998 87 8999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc---CCChHHHHHHHHHHHHHcCC
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~---~~~~~~~~~~~~~~l~~~~l 218 (346)
|.++.... . ...++.++|++|+...+..+ ++.+|+.++..... ........+++.++++.+++
T Consensus 70 g~~~~~~~---~-~~~~~~~~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 135 (272)
T PRK13547 70 GEPLAAID---A-PRLARLRAVLPQAAQPAFAF----------SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA 135 (272)
T ss_pred CEEcccCC---H-HHHHhhcEEecccCCCCCCC----------cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc
Confidence 99874110 0 01122346677664322222 34445444321000 00112345678889999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------------CccccCCCC-----------
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------------NCPYLSFRD----------- 269 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------------DEPts~Ld~----------- 269 (346)
.+ ..++++.+|||||+||++||||| ||||++||.
T Consensus 136 ~~-----------------~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 198 (272)
T PRK13547 136 TA-----------------LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVR 198 (272)
T ss_pred Hh-----------------hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 87 45888999999999999999987 899999984
Q ss_pred ------CceEEEEec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 ------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.|+|+||| +.+.++||++++ |++|++++.|++++++.
T Consensus 199 ~~~~~~~~tviiisH~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 199 RLARDWNLGVLAIVHDPNLAARHADRIAM-LADGAIVAHGAPADVLT 244 (272)
T ss_pred HHHHhcCCEEEEEECCHHHHHHhCCEEEE-EECCeEEEecCHHHHcC
Confidence 689999999 567789999965 99999999999887754
No 246
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-36 Score=279.49 Aligned_cols=198 Identities=13% Similarity=0.179 Sum_probs=147.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~~--~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~~~-- 68 (236)
T cd03253 1 IEFENVTFAYDPGRP--V---LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIREV-- 68 (236)
T ss_pred CEEEEEEEEeCCCCc--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhhhC--
Confidence 578999999964333 3 777999999999999999999999999999999999 9999999999887410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++|+. .++..++.+|+.++... .. ...+.++++.+++.+.+..+|.|++
T Consensus 69 --~~~~~~~~i~~~~q~~-----------~~~~~tv~~nl~~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~~~ 128 (236)
T cd03253 69 --TLDSLRRAIGVVPQDT-----------VLFNDTIGYNIRYGRPD---AT----DEEVIEAAKAAQIHDKIMRFPDGYD 128 (236)
T ss_pred --CHHHHHhhEEEECCCC-----------hhhcchHHHHHhhcCCC---CC----HHHHHHHHHHcCcHHHHHhcccccc
Confidence 0000122345555553 33444666776654321 11 1224455666666665555566666
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+ ++.+.+||||||||++||||| ||||++||. |.|+|++|| +.+. .
T Consensus 129 ~~~------~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~-~ 201 (236)
T cd03253 129 TIV------GERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV-N 201 (236)
T ss_pred chh------hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-h
Confidence 654 344779999999999999999 999999984 689999999 4554 4
Q ss_pred ccEEEEEecCCeEeecCCcccccc
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
||+++ +|++|++++.|+.+++..
T Consensus 202 ~d~~~-~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 202 ADKII-VLKDGRIVERGTHEELLA 224 (236)
T ss_pred CCEEE-EEECCEEEeeCCHHHHhh
Confidence 99996 499999999998887765
No 247
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-36 Score=262.57 Aligned_cols=217 Identities=14% Similarity=0.170 Sum_probs=175.5
Q ss_pred CCcEEEeeeEEEeCCC------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 68 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
++.++++|+++.|... ..++|++. |||++++|+++||||.||||||||.++|+|+.+ |++|+|+++
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~---vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n 73 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKP---VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILIN 73 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccc---eEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEEC
Confidence 4578999999988532 22457555 999999999999999999999999999999999 999999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
|+.+. ..++..+.+++.++|||+.... |+.+ .+..-+..++............+++.+-|+.+||-++
T Consensus 74 ~~~L~----~~Dy~~R~k~IRMiFQDpnts~-----NPRl---~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pd 141 (267)
T COG4167 74 DHPLH----FGDYSFRSKRIRMIFQDPNTSL-----NPRL---RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD 141 (267)
T ss_pred Ccccc----ccchHhhhhheeeeecCCcccc-----Chhh---hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcc
Confidence 99875 2344445556678888875431 2222 2222222333444455567778899999999999875
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 275 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvii 275 (346)
..+-+|+.||-|||||||+|||| ||...+||. |.+.|.
T Consensus 142 ----------------han~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiY 205 (267)
T COG4167 142 ----------------HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred ----------------ccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEE
Confidence 46889999999999999999999 999999883 999999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
|+. ..+..++|.|+| |++|+++|.|++.+++..|.++-++.++.+
T Consensus 206 V~QhlG~iKHi~D~viV-M~EG~vvE~G~t~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 206 VTQHIGMIKHISDQVLV-MHEGEVVERGSTADVLASPLHELTKRLIES 252 (267)
T ss_pred EechhhHhhhhcccEEE-EecCceeecCChhhhhcCCccHHHHHHHHH
Confidence 998 689999999965 999999999999999999999988888764
No 248
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=281.46 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=147.8
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~~~~--i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~--- 72 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT--A---LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTR--- 72 (272)
T ss_pred eEEEEeEEEEecCCcE--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEhH---
Confidence 6999999999964333 3 777999999999999999999999999999999999 99999999998864
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. ...++.++|++|+....... ...+.+++.++... .........++++.++++.+++.+
T Consensus 73 ---~-~~~~~~i~~v~q~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------ 134 (272)
T PRK15056 73 ---Q-ALQKNLVAYVPQSEEVDWSF--------PVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE------ 134 (272)
T ss_pred ---H-hhccceEEEeccccccccCC--------CcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh------
Confidence 1 11123467888775431100 01122332221100 000112334566788999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 135 -----------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 135 -----------FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45888999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCcccccc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.+..+||+++ ++ +|++++.|++++++.
T Consensus 204 ~~~~~~d~v~-~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 204 SVTEFCDYTV-MV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHhCCEEE-EE-CCEEEeecCHHhccC
Confidence 6888999994 36 899999999988764
No 249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.2e-36 Score=278.43 Aligned_cols=201 Identities=12% Similarity=0.137 Sum_probs=145.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++.....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~i~~l~~~~~~~~~~~~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~- 71 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI---LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIRDLN- 71 (238)
T ss_pred CeEEEEEEecCCCCCccc---eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehhhcC-
Confidence 578999999975321124 677999999999999999999999999999999999 99999999998864100
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
... .++.++|++| ++.++..++.+|+.++.... . .+++.+.++..++.+....+|.|++
T Consensus 72 --~~~-~~~~i~~~~q-----------~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (238)
T cd03249 72 --LRW-LRSQIGLVSQ-----------EPVLFDGTIAENIRYGKPDA---T----DEEVEEAAKKANIHDFIMSLPDGYD 130 (238)
T ss_pred --HHH-HHhhEEEECC-----------chhhhhhhHHHHhhccCCCC---C----HHHHHHHHHHcChHHHHHhhccccc
Confidence 000 1123445544 44444446777776543210 1 1223344555555544444444444
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+ ++++.+||||||||++||||| ||||++||. |.|+|++|| +.+. +
T Consensus 131 ~~~------~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~ 203 (238)
T cd03249 131 TLV------GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-N 203 (238)
T ss_pred eee------ccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-h
Confidence 443 455889999999999999999 999999983 789999999 4565 7
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||++++ |++|++++.|+.+++...
T Consensus 204 ~d~v~~-l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 204 ADLIAV-LQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred CCEEEE-EECCEEEEeCCHHHHhhc
Confidence 999965 999999999988777654
No 250
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.2e-36 Score=275.55 Aligned_cols=190 Identities=11% Similarity=0.082 Sum_probs=143.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~i~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 73 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAK---I---LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDIST 73 (225)
T ss_pred CceEEEeccEEeeCCce---e---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcCc
Confidence 45799999999997533 4 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . ...++.++|++|+...+.. ++.+|+.+...... ....++++.++++.+++.+.
T Consensus 74 ~~-~---~~~~~~i~~~~q~~~l~~~-----------tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~l~~~------ 129 (225)
T PRK10247 74 LK-P---EIYRQQVSYCAQTPTLFGD-----------TVYDNLIFPWQIRN---QQPDPAIFLDDLERFALPDT------ 129 (225)
T ss_pred CC-H---HHHHhccEEEecccccccc-----------cHHHHHHhHHhhcC---CChHHHHHHHHHHHcCCChH------
Confidence 10 0 0113356677776544332 34444443221111 11123567789999999632
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+|||||+||++||||| ||||++||. |.|+|++|| +
T Consensus 130 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 130 ----------ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 35888999999999999999999 999999984 789999999 4
Q ss_pred hhhccccEEEEEe-cCCeEeecCCcc
Q 019066 280 DLLSLTDRARIRT-YLGELLGIPPAK 304 (346)
Q Consensus 280 ~~~~~aDri~v~l-~~G~iv~~g~~~ 304 (346)
.+. .||++++ | +++..+++|+++
T Consensus 200 ~~~-~~d~i~~-l~~~~~~~~~~~~~ 223 (225)
T PRK10247 200 EIN-HADKVIT-LQPHAGEMQEARYE 223 (225)
T ss_pred HHH-hCCEEEE-EecccchHhhhhhc
Confidence 554 6999975 7 577788888774
No 251
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.5e-36 Score=273.94 Aligned_cols=192 Identities=16% Similarity=0.120 Sum_probs=147.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~~-~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 71 (221)
T cd03244 3 IEFKNVSLRYRPNLP-PV---LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDISKI-- 71 (221)
T ss_pred EEEEEEEEecCCCCc-cc---ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhHhC--
Confidence 789999999975321 14 777999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.. ...++.++|++|+... +..++.+|+.+... ...+++.++++.+++.+.+..+|.|+.
T Consensus 72 -~~-~~~~~~i~~~~q~~~l-----------~~~tv~enl~~~~~--------~~~~~~~~~~~~~~l~~~~~~l~~~l~ 130 (221)
T cd03244 72 -GL-HDLRSRISIIPQDPVL-----------FSGTIRSNLDPFGE--------YSDEELWQALERVGLKEFVESLPGGLD 130 (221)
T ss_pred -CH-HHHhhhEEEECCCCcc-----------ccchHHHHhCcCCC--------CCHHHHHHHHHHhCcHHHHHhcccccc
Confidence 00 0113355666666443 33355566542111 112456777888898887777788888
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.++. ++.+||+||+||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 131 ~~~~~------~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 203 (221)
T cd03244 131 TVVEE------GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID- 203 (221)
T ss_pred ccccc------CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-
Confidence 77654 4779999999999999999 999999984 789999999 45654
Q ss_pred ccEEEEEecCCeEeecCC
Q 019066 285 TDRARIRTYLGELLGIPP 302 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~ 302 (346)
||++++ |++|++++.|+
T Consensus 204 ~d~i~~-l~~g~~~~~~~ 220 (221)
T cd03244 204 SDRILV-LDKGRVVEFDS 220 (221)
T ss_pred CCEEEE-EECCeEEecCC
Confidence 999965 99999998875
No 252
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4e-36 Score=280.22 Aligned_cols=202 Identities=15% Similarity=0.082 Sum_probs=153.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.|+++|++++|++... .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 17 ~~~i~~~~l~~~~~~~~~-~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~~ 87 (257)
T cd03288 17 GGEIKIHDLCVRYENNLK-PV---LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDISK 87 (257)
T ss_pred CceEEEEEEEEEeCCCCC-cc---eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhhh
Confidence 456999999999975321 14 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....++.++|++|++. ++..++.+|+..... ...+.+.++++.+++...+..+|.
T Consensus 88 ~----~~~~~~~~i~~v~q~~~-----------l~~~tv~~nl~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~ 144 (257)
T cd03288 88 L----PLHTLRSRLSIILQDPI-----------LFSGSIRFNLDPECK--------CTDDRLWEALEIAQLKNMVKSLPG 144 (257)
T ss_pred C----CHHHHhhhEEEECCCCc-----------ccccHHHHhcCcCCC--------CCHHHHHHHHHHhCcHHHHhhccc
Confidence 0 00011334556665543 333355555542110 012345566777788777777777
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
|+++.+++. +.+||+||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 145 ~l~~~~~~~------~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~ 218 (257)
T cd03288 145 GLDAVVTEG------GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTI 218 (257)
T ss_pred ccCcEeccC------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHH
Confidence 888776654 679999999999999999 999999884 799999999 445
Q ss_pred hccccEEEEEecCCeEeecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.. |||+++ |++|++++.|+++++...
T Consensus 219 ~~-~dri~~-l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 219 LD-ADLVLV-LSRGILVECDTPENLLAQ 244 (257)
T ss_pred Hh-CCEEEE-EECCEEEEeCCHHHHHhc
Confidence 54 999965 999999999999887654
No 253
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-36 Score=275.56 Aligned_cols=177 Identities=20% Similarity=0.303 Sum_probs=147.7
Q ss_pred eeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccccc
Q 019066 94 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 173 (346)
Q Consensus 94 ~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~ 173 (346)
+++|+++.-.++||.|+||||||||+|+|+|+.+ |++|.|.++|..+......-.....++++||+|||.++|..
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH 90 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccc
Confidence 4899998866999999999999999999999999 99999999998764111111112236788999999888877
Q ss_pred c-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHH
Q 019066 174 D-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 252 (346)
Q Consensus 174 ~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQ 252 (346)
| |..|+.+.. . ........++...+|+.+ +++++|..|||||||
T Consensus 91 ~tVrgNL~YG~-----------~-------~~~~~~fd~iv~lLGI~h-----------------LL~R~P~~LSGGEkQ 135 (352)
T COG4148 91 YTVRGNLRYGM-----------W-------KSMRAQFDQLVALLGIEH-----------------LLDRYPGTLSGGEKQ 135 (352)
T ss_pred eEEecchhhhh-----------c-------ccchHhHHHHHHHhCcHH-----------------HHhhCCCccCcchhh
Confidence 7 666665533 1 123455677889999999 789999999999999
Q ss_pred HHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCcc
Q 019066 253 NQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 253 Rv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~ 304 (346)
||+|+||| |||.++||. ++.|++||| +++.++||+++ +|++|++.+.|..+
T Consensus 136 RVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV-~le~GkV~A~g~~e 214 (352)
T COG4148 136 RVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVV-VLENGKVKASGPLE 214 (352)
T ss_pred HHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEE-EecCCeEEecCcHH
Confidence 99999999 999999984 899999999 78999999995 59999999999999
Q ss_pred ccccCCC
Q 019066 305 QIFDIPE 311 (346)
Q Consensus 305 ~l~~~~~ 311 (346)
+++..+.
T Consensus 215 ~v~~~~~ 221 (352)
T COG4148 215 EVWGSPD 221 (352)
T ss_pred HHhcCcc
Confidence 9998874
No 254
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-35 Score=267.48 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=140.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
+.+ ||+|+|++. . + |+||+|++ |+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 2 ~~~-~l~~~~~~~--~-----~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 66 (214)
T cd03297 2 LCV-DIEKRLPDF--T-----L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLFDSRK 66 (214)
T ss_pred cee-eeeEecCCe--e-----e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecccccc
Confidence 456 899999763 2 3 59999999 9999999999999999999999999 999999999988641000
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+..+ +.+|+.+ ..... .....++++.++++.+++.+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~-----------~~~~~---~~~~~~~~~~~~l~~~~l~~--------- 123 (214)
T cd03297 67 KINLPPQQRKIGLVFQQYALFPHLNVRENLAF-----------GLKRK---RNREDRISVDELLDLLGLDH--------- 123 (214)
T ss_pred hhhhhhHhhcEEEEecCCccCCCCCHHHHHHH-----------HHhhC---CHHHHHHHHHHHHHHcCCHh---------
Confidence 000111234567777776554433 4444432 21100 12334567889999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 124 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 124 --------LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred --------HhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 45888999999999999999999 999999983 689999999 567
Q ss_pred hccccEEEEEecCCeEeecC
Q 019066 282 LSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g 301 (346)
..+||++++ |++|++++.|
T Consensus 196 ~~~~d~i~~-l~~G~i~~~g 214 (214)
T cd03297 196 EYLADRIVV-MEDGRLQYIG 214 (214)
T ss_pred HHhcCEEEE-EECCEEEecC
Confidence 889999965 9999998765
No 255
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=299.82 Aligned_cols=194 Identities=12% Similarity=0.126 Sum_probs=150.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~~~---i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~ 70 (501)
T PRK11288 2 SPYLSFDGIGKTFPGVK---A---LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMRF 70 (501)
T ss_pred CceEEEeeeEEEECCEE---E---EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCC
Confidence 35799999999997532 4 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh--ccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... .........++++.++++.+++.+
T Consensus 71 ~~---~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 132 (501)
T PRK11288 71 AS---TTAALAAGVAIIYQELHLVPEM----------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI----- 132 (501)
T ss_pred CC---HHHHHhCCEEEEEechhccCCC----------CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----
Confidence 10 1111244567777765544332 344444433210 011123445677889999999976
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 133 ------------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~ 200 (501)
T PRK11288 133 ------------DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM 200 (501)
T ss_pred ------------CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35788999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCc
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
+.+..+|||+++ |++|+++..++.
T Consensus 201 ~~~~~~~d~i~~-l~~G~i~~~~~~ 224 (501)
T PRK11288 201 EEIFALCDAITV-FKDGRYVATFDD 224 (501)
T ss_pred HHHHHhCCEEEE-EECCEEEeecCc
Confidence 568889999965 999999987653
No 256
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.7e-35 Score=269.64 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=143.3
Q ss_pred EEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|+++|+++.|+++. ...+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 2 l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 73 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQV---LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELYGAS 73 (220)
T ss_pred EEEEEEEEEccCCCcceeE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhHhcC
Confidence 78999999996531 1224 677999999999999999999999999999999999 99999999999874100
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.......++.++|++|+...+..+ +.+|+.+.. ...........++++.++++.+++.+
T Consensus 74 -~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 133 (220)
T TIGR02982 74 -EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL-----------ELQPNLSYQEARERARAMLEAVGLGD-------- 133 (220)
T ss_pred -HhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHH-----------HhccCCCHHHHHHHHHHHHHHcCChh--------
Confidence 000011234567777776555433 555544322 11111123445567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~~ 281 (346)
..++++.+||+|||||++||||| ||||++||. +.|+|++|| ..+
T Consensus 134 ---------~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~ 204 (220)
T TIGR02982 134 ---------HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI 204 (220)
T ss_pred ---------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45888999999999999999999 999999984 799999999 345
Q ss_pred hccccEEEEEecCCeEe
Q 019066 282 LSLTDRARIRTYLGELL 298 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv 298 (346)
.++||++++ |++|+++
T Consensus 205 ~~~~d~v~~-l~~g~~~ 220 (220)
T TIGR02982 205 LDVADRIVH-MEDGKLL 220 (220)
T ss_pred HhhCCEEEE-EECCEEC
Confidence 679999975 9999863
No 257
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.6e-36 Score=301.84 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=150.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~~~~ 71 (490)
T PRK10938 3 SLQISQGTFRLSDTK---T---LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHITRLS 71 (490)
T ss_pred eEEEEeEEEEcCCee---e---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcccccCC
Confidence 699999999997533 4 777999999999999999999999999999999999 99999999987753100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
... .++.+++++|+.... +..+....+..++.+++..+ ...++++.++++.+++.+
T Consensus 72 ---~~~-~~~~i~~~~q~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~--------- 127 (490)
T PRK10938 72 ---FEQ-LQKLVSDEWQRNNTD--MLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITA--------- 127 (490)
T ss_pred ---HHH-HHHHhceeccCcchh--hcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHh---------
Confidence 001 122456777764321 00010011122444554321 123567889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|++|| +.+.
T Consensus 128 --------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~ 199 (490)
T PRK10938 128 --------LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIP 199 (490)
T ss_pred --------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 56899999999999999999999 999999984 789999999 5788
Q ss_pred ccccEEEEEecCCeEeecCCccccccC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++||++++ |++|+++..|++++++..
T Consensus 200 ~~~d~v~~-l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 200 DFVQFAGV-LADCTLAETGEREEILQQ 225 (490)
T ss_pred hhCCEEEE-EECCEEEEeCCHHHHhcc
Confidence 99999975 999999999998877654
No 258
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.3e-35 Score=272.31 Aligned_cols=190 Identities=15% Similarity=0.150 Sum_probs=144.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC----CCceEEECceeCCCcccccccccCCCCccceeec
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD 167 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p----~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d 167 (346)
|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++. .....++.++|++|+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~~~~~G~i~~~g~~~~------~~~~~~~~i~~~~q~ 70 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-----PGLTQTSGEILLDGRPLL------PLSIRGRHIATIMQN 70 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CccCccccEEEECCEech------hhhhhhheeEEEecC
Confidence 566999999999999999999999999999999999 8 8999999999875 112223467888888
Q ss_pred cc-ccc-cc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCC
Q 019066 168 TR-SLS-DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 244 (346)
Q Consensus 168 ~~-~~~-~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~ 244 (346)
.. .+. .+ +.+++. +...... ......++++.++++.+++.+. ....++.+.
T Consensus 71 ~~~~~~~~~t~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~--------------~~~~~~~~~ 124 (230)
T TIGR02770 71 PRTAFNPLFTMGNHAI-----------ETLRSLG-KLSKQARALILEALEAVGLPDP--------------EEVLKKYPF 124 (230)
T ss_pred chhhcCcccCHHHHHH-----------HHHHHcC-ccHHHHHHHHHHHHHHcCCCch--------------HHHHhCChh
Confidence 64 221 12 333332 2111111 1123345678899999999730 004578899
Q ss_pred CCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCe
Q 019066 245 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~ 296 (346)
+||||||||++||||| ||||++||. +.|||++|| +.+..+||++++ |++|+
T Consensus 125 ~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~-l~~G~ 203 (230)
T TIGR02770 125 QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAV-MDDGR 203 (230)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCE
Confidence 9999999999999999 999999883 689999999 567889999965 99999
Q ss_pred EeecCCccccccCCCCCChHHHH
Q 019066 297 LLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 297 iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+++.|++++++..+...+.+.++
T Consensus 204 i~~~~~~~~~~~~~~~~~~~~~~ 226 (230)
T TIGR02770 204 IVERGTVKEIFYNPKHETTRKLL 226 (230)
T ss_pred EEEeCCHHHHHhCcCCHHHHHHH
Confidence 99999999998776555544343
No 259
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.6e-35 Score=273.45 Aligned_cols=202 Identities=13% Similarity=0.113 Sum_probs=145.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i 145 (346)
.++|+++||++.|++.. + |++|||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|+++|.++
T Consensus 5 ~~~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~~~G~i~~~g~~~ 73 (252)
T CHL00131 5 KPILEIKNLHASVNENE---I---LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-----ILEGDILFKGESI 73 (252)
T ss_pred CceEEEEeEEEEeCCEE---e---eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-----CCCceEEECCEEc
Confidence 45799999999997532 4 7779999999999999999999999999999998 57 8999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
.... .....+..+++++|+...+.++ +.+++.+.... ....... .........+++.++++.+++.+.
T Consensus 74 ~~~~---~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~--- 142 (252)
T CHL00131 74 LDLE---PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNS--KRKFQGL---PELDPLEFLEIINEKLKLVGMDPS--- 142 (252)
T ss_pred ccCC---hhhhheeeEEEEeccccccccccHHHHHHHhhhh--hhccccc---ccccHHHHHHHHHHHHHHcCCchh---
Confidence 5210 0011112356677776555444 34443321110 0000000 000112334677889999999732
Q ss_pred ccceeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
..++.+. .|||||+||++||||| ||||++||. |.|+|++||
T Consensus 143 -------------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH 209 (252)
T CHL00131 143 -------------FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209 (252)
T ss_pred -------------hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 2467776 5999999999999999 999999984 789999999
Q ss_pred --hhhhcc-ccEEEEEecCCeEeecCCccc
Q 019066 279 --GDLLSL-TDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 279 --~~~~~~-aDri~v~l~~G~iv~~g~~~~ 305 (346)
+.+..+ ||++++ |++|++++.|+++.
T Consensus 210 ~~~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 238 (252)
T CHL00131 210 YQRLLDYIKPDYVHV-MQNGKIIKTGDAEL 238 (252)
T ss_pred CHHHHHhhhCCEEEE-EeCCEEEEecChhh
Confidence 456665 899964 99999999998873
No 260
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=298.78 Aligned_cols=192 Identities=14% Similarity=0.200 Sum_probs=148.5
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccccc
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 152 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~ 152 (346)
++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~~nl~~~~~~~~---i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~--- 66 (491)
T PRK10982 1 MSNISKSFPGVK---A---LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEIDFKS--- 66 (491)
T ss_pred CCceEEEeCCEE---e---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECCCCC---
Confidence 478999997532 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred ccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC--CChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 153 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 153 ~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++|+...+..+ ++.+|+.++...... .......+++.++++.+++..
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------- 126 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQR----------SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI---------- 126 (491)
T ss_pred HHHHHhCCEEEEecccccccCC----------CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC----------
Confidence 1111234567777776444332 344444433210000 122344567889999999986
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+||| +.+..
T Consensus 127 -------~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~ 199 (491)
T PRK10982 127 -------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ 199 (491)
T ss_pred -------CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 45888999999999999999999 999999984 789999999 57888
Q ss_pred cccEEEEEecCCeEeecCCcccc
Q 019066 284 LTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+||++++ |++|++++.|+++++
T Consensus 200 ~~d~i~~-l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 200 LCDEITI-LRDGQWIATQPLAGL 221 (491)
T ss_pred hCCEEEE-EECCEEEeecChhhC
Confidence 9999975 999999999988765
No 261
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-36 Score=268.44 Aligned_cols=190 Identities=12% Similarity=0.187 Sum_probs=162.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|++++|+++|++.. | ++|+||++++|++++++|||||||||++|+|.|++. |++|+|.++|.++.
T Consensus 2 ~L~ie~vtK~Fg~k~---a---v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~--- 67 (300)
T COG4152 2 ALEIEGVTKSFGDKK---A---VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLS--- 67 (300)
T ss_pred ceEEecchhccCcee---e---ecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchh---
Confidence 589999999998754 5 555999999999999999999999999999999999 99999999999886
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
...+.+|||.|.+..++..+ |.+.+.++.. ....+..+.++++..+|+++++..
T Consensus 68 -----~~~~~rIGyLPEERGLy~k~tv~dql~yla~------------LkGm~~~e~~~~~~~wLer~~i~~-------- 122 (300)
T COG4152 68 -----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAE------------LKGMPKAEIQKKLQAWLERLEIVG-------- 122 (300)
T ss_pred -----hhhhhhcccChhhhccCccCcHHHHHHHHHH------------hcCCcHHHHHHHHHHHHHhccccc--------
Confidence 22244678888887777666 5555544432 124567888999999999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
...++..+||.|++|++.+..|+ |||+||||+ |.|||++|| ..+
T Consensus 123 ---------~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v 193 (300)
T COG4152 123 ---------KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193 (300)
T ss_pred ---------cccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH
Confidence 45888999999999999999998 999999996 999999999 689
Q ss_pred hccccEEEEEecCCeEeecCCcccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.++||++++ |++|+.|-+|+.+++-.
T Consensus 194 EeLCD~llm-L~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 194 EELCDRLLM-LKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHhhhhhe-ecCCceEEeccHHHHHH
Confidence 999999975 99999999999887755
No 262
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.9e-35 Score=297.74 Aligned_cols=195 Identities=15% Similarity=0.186 Sum_probs=149.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC--CCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p--~~G~I~~~g~~i~~ 147 (346)
+|+++||+++|++.. + |++|||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~~~~---i---l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-----~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK---A---LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-----HGTWDGEIYWSGSPLKA 69 (500)
T ss_pred CEEEEeEEEEeCCeE---e---ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEECCC
Confidence 489999999997532 4 677999999999999999999999999999999998 6 79999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc--c-CCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI--R-RSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~--~-~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
.. .....++.++|++|+...+..+ +.+|+ .++.... . ........+++.++++.+++.+..
T Consensus 70 ~~---~~~~~~~~i~~v~q~~~~~~~~tv~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~- 134 (500)
T TIGR02633 70 SN---IRDTERAGIVIIHQELTLVPELSVAENI-----------FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN- 134 (500)
T ss_pred CC---HHHHHhCCEEEEeeccccCCCCcHHHHH-----------HhhccccccccccCHHHHHHHHHHHHHHcCCCCCc-
Confidence 10 1111234567888876544433 44444 3322110 0 012234456788999999997621
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
.++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 135 ---------------~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitH 199 (500)
T TIGR02633 135 ---------------VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISH 199 (500)
T ss_pred ---------------ccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 2567899999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+.+..+||++++ |++|+++..++++++
T Consensus 200 d~~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 200 KLNEVKAVCDTICV-IRDGQHVATKDMSTM 228 (500)
T ss_pred cHHHHHHhCCEEEE-EeCCeEeeecCcccC
Confidence 578889999964 999999999887654
No 263
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=255.06 Aligned_cols=217 Identities=17% Similarity=0.129 Sum_probs=166.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee---
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~--- 144 (346)
.|.+++.++++.|++..- .+||||++.|||+++|||+||||||||++||++-+. |++|.|.+.-.+
T Consensus 4 ~PLL~V~~lsk~Yg~~~g------c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~~ 72 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKG------CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQP 72 (258)
T ss_pred CcceeehhhhhhhCCCcC------ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCCc
Confidence 568999999999987654 788999999999999999999999999999999999 999999997533
Q ss_pred --CCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 145 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 145 --i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
+..++..+...+.|...+|+-|.++.--.+ | +...||..-+...+...-...++.+.++|+.+.++..
T Consensus 73 ~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~V---------SAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~ 143 (258)
T COG4107 73 RDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQV---------SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLD 143 (258)
T ss_pred hhHhhhchHHHHHHhhhccceeecCccccceeee---------ccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcc
Confidence 222333333334455556665555422111 1 2222333222222222234567888899999999864
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 275 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvii 275 (346)
..+..|.++||||+||+.|||-| ||||.+||- +.+++|
T Consensus 144 ----------------RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~vi 207 (258)
T COG4107 144 ----------------RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI 207 (258)
T ss_pred ----------------cccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEE
Confidence 35888999999999999999999 999999873 889999
Q ss_pred Eech--hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 276 VTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 276 iTH~--~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
|||+ .+.-++||.. +|++|++++.|-++.++..|.++|+.-+..+
T Consensus 208 VTHDl~VarLla~rlm-vmk~g~vve~GLTDrvLDDP~hPYTQLLVSs 254 (258)
T COG4107 208 VTHDLAVARLLADRLM-VMKQGQVVESGLTDRVLDDPHHPYTQLLVSS 254 (258)
T ss_pred EechhHHHHHhhhcce-eecCCCEeccccccccccCCCCchHHHHHHH
Confidence 9995 4566899996 4999999999999999999999998776654
No 264
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=287.14 Aligned_cols=191 Identities=15% Similarity=0.206 Sum_probs=157.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.+++++++|.|++ ++| +++|||+|++||+.||+|+||||||||+++|.|+|+ |++|+|+++|+.+..
T Consensus 2 ~~~l~~~~itK~f~~---~~A---nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~ 70 (501)
T COG3845 2 EPALEMRGITKRFPG---VVA---NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRI 70 (501)
T ss_pred CceEEEeccEEEcCC---EEe---cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEecc
Confidence 346999999999984 457 555999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecc-cccccchhhchHhhHH-HHHhhhhcchhh--ccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~-~~~~~~v~qn~~~~~~-~v~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
. .+.|. +.-++||+|++.+++. +|.+||.++... ....+....++++.++.++.||+-+
T Consensus 71 ~---------------sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-- 133 (501)
T COG3845 71 K---------------SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-- 133 (501)
T ss_pred C---------------CHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC--
Confidence 1 12222 2334556666666655 777777777542 2234567788999999999999853
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
.+++..+||-||||||.|-+|| ||||+-|-+ |+|||+|||
T Consensus 134 ---------------p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITH 198 (501)
T COG3845 134 ---------------PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198 (501)
T ss_pred ---------------ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 3788999999999999999999 999999754 999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCC
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
+++.++|||+.| |+.|+++..-+
T Consensus 199 KL~Ev~~iaDrvTV-LR~Gkvvgt~~ 223 (501)
T COG3845 199 KLKEVMAIADRVTV-LRRGKVVGTVD 223 (501)
T ss_pred cHHHHHHhhCeeEE-EeCCeEEeeec
Confidence 899999999986 99999987765
No 265
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6.1e-35 Score=268.01 Aligned_cols=173 Identities=18% Similarity=0.186 Sum_probs=135.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ... ..++++|+...+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~------~~~---~~~~v~q~~~l~ 66 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITE------PGP---DRMVVFQNYSLL 66 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC------CCh---hheEEecCcccC
Confidence 356999999999999999999999999999999999 999999999998751 110 125667766554
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
..+ +.+|+.+.... ..........++++.++++.+++.+ ..++++.+|||||
T Consensus 67 ~~~tv~e~l~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG~ 119 (230)
T TIGR01184 67 PWLTVRENIALAVDR----------VLPDLSKSERRAIVEEHIALVGLTE-----------------AADKRPGQLSGGM 119 (230)
T ss_pred CCCCHHHHHHHHHHh----------cccCCCHHHHHHHHHHHHHHcCCHH-----------------HHcCChhhCCHHH
Confidence 433 55554432100 0011123344567889999999986 4688899999999
Q ss_pred HHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCC
Q 019066 251 QYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 251 rQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
|||++||||| ||||++||. |+|+|+||| +.+..+||++++ |++|++++.|+
T Consensus 120 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~-l~~G~i~~~~~ 198 (230)
T TIGR01184 120 KQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVM-LTNGPAANIGQ 198 (230)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE-EeCCcEecccC
Confidence 9999999999 999999984 689999999 567889999965 99999999998
Q ss_pred cccc
Q 019066 303 AKQI 306 (346)
Q Consensus 303 ~~~l 306 (346)
..++
T Consensus 199 ~~~~ 202 (230)
T TIGR01184 199 ILEV 202 (230)
T ss_pred ceec
Confidence 7766
No 266
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.3e-35 Score=268.55 Aligned_cols=189 Identities=12% Similarity=0.159 Sum_probs=136.9
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..++|+++|++++|++.....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 79 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLV---LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPIS 79 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCchH
Confidence 4678999999999975321124 667999999999999999999999999999999999 99999999998764
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC--ChHHHHHHHHHHHHHc--CCCccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS--DSSSLRNRMRCKAHKI--GCEPSV 222 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~--~l~~~~ 222 (346)
.. .....++.++|++| ++.++..++.+|+.++....... ........+.++++.+ |+.+
T Consensus 80 ~~----~~~~~~~~i~~~~q-----------~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-- 142 (226)
T cd03248 80 QY----EHKYLHSKVSLVGQ-----------EPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT-- 142 (226)
T ss_pred Hc----CHHHHHhhEEEEec-----------ccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccc--
Confidence 10 00111223445444 44445557777776543211000 0001112245667777 6665
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 278 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH 278 (346)
.+++++.+|||||+||++||||| ||||++||. +.|+|++||
T Consensus 143 ---------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh 207 (226)
T cd03248 143 ---------------EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207 (226)
T ss_pred ---------------hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 35777999999999999999999 999999984 689999999
Q ss_pred --hhhhccccEEEEEecCCeE
Q 019066 279 --GDLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~i 297 (346)
+.+. .||++++ |++|++
T Consensus 208 ~~~~~~-~~d~i~~-l~~g~i 226 (226)
T cd03248 208 RLSTVE-RADQILV-LDGGRI 226 (226)
T ss_pred CHHHHH-hCCEEEE-ecCCcC
Confidence 4565 5999964 998874
No 267
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-35 Score=331.23 Aligned_cols=211 Identities=15% Similarity=0.105 Sum_probs=166.8
Q ss_pred hhhHHHHHHhhhhhhhhc--c----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRT--R----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~--~----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
.+..|+.++++.++.... . ....|+++|++|+|+......+ |+|+||+|++|+.++|+||||||||||+++
T Consensus 586 ~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTLl~l 662 (1622)
T PLN03130 586 VSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT---LSNINLDVPVGSLVAIVGSTGEGKTSLISA 662 (1622)
T ss_pred HHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce---eeceeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 334567777754432111 1 1235999999999975321114 777999999999999999999999999999
Q ss_pred HhhhccCCCCCCCC-ceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 122 ISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 122 L~gl~~~~~~~p~~-G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
|+|.++ |++ |+|.+.+ .++|++|++.. +..++++||.++..
T Consensus 663 LlG~~~-----~~~GG~I~l~~-----------------~Iayv~Q~p~L-----------fngTIreNI~fg~~----- 704 (1622)
T PLN03130 663 MLGELP-----PRSDASVVIRG-----------------TVAYVPQVSWI-----------FNATVRDNILFGSP----- 704 (1622)
T ss_pred HHHhhc-----cCCCceEEEcC-----------------eEEEEcCcccc-----------CCCCHHHHHhCCCc-----
Confidence 999999 999 8997533 23566665544 44556666665432
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
..+++..++++.++|.+++..+|+|++|+|||+|. +||||||||++||||+ |||||+||.
T Consensus 705 ---~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~------~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~ 775 (1622)
T PLN03130 705 ---FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGV------NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775 (1622)
T ss_pred ---ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCC------CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Confidence 23567888999999999999999999999999965 8999999999999999 999999984
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| -.....||+|+ +|++|+|++.|+++++...
T Consensus 776 ~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii-~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 776 GRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRII-LVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEE-EEeCCEEEEeCCHHHHHhc
Confidence 789999999 34556699996 5999999999999988753
No 268
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-35 Score=331.27 Aligned_cols=212 Identities=15% Similarity=0.115 Sum_probs=165.7
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
.+..|+.++++.+++.... ....|+++|++|+|+......+ |+|+||+|++||.++|+||||||||||+++
T Consensus 586 ~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTLl~l 662 (1495)
T PLN03232 586 VSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT---LSDINLEIPVGSLVAIVGGTGEGKTSLISA 662 (1495)
T ss_pred HHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHH
Confidence 3445677777655432111 1235999999999975311113 777999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+++ |++|.+.. + ++.++|++|+ +.++..++++||.++..
T Consensus 663 LlG~~~-----~~~G~i~~----~------------~~~Iayv~Q~-----------p~Lf~gTIreNI~fg~~------ 704 (1495)
T PLN03232 663 MLGELS-----HAETSSVV----I------------RGSVAYVPQV-----------SWIFNATVRENILFGSD------ 704 (1495)
T ss_pred HhCCCc-----ccCCCEEE----e------------cCcEEEEcCc-----------cccccccHHHHhhcCCc------
Confidence 999999 99886631 1 1233455555 45555567777776531
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
..+++..++++.+++.+++..+|+|++|.|||+|. +||||||||++||||+ |||||+||.
T Consensus 705 --~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~------~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~ 776 (1495)
T PLN03232 705 --FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV------NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776 (1495)
T ss_pred --cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc------ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 23467788899999999999999999999999965 8999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| -.....||+|+ +|++|+|++.|++++++..
T Consensus 777 ~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii-~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 777 HQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRII-LVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEE-EEeCCEEEEecCHHHHHhc
Confidence 789999999 34556799996 5999999999999988753
No 269
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-35 Score=298.27 Aligned_cols=200 Identities=13% Similarity=0.123 Sum_probs=149.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~g~~i~ 146 (346)
.++|+++||++.|+.+....+ |+|+||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|+++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKR---VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-----GRWEGEIFIDGKPVK 328 (506)
T ss_pred CceEEEecCcccccccccccc---ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCcEEEECCEECC
Confidence 457999999999952111124 666999999999999999999999999999999997 6 8999999999874
Q ss_pred CcccccccccCCCCccceeeccc---ccccc-hhhchHhhHHHHHhhhhcchhh-c-c--CCChHHHHHHHHHHHHHcCC
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELV-I-R--RSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~---~~~~~-v~qn~~~~~~~v~~~i~~~~~~-~-~--~~~~~~~~~~~~~~l~~~~l 218 (346)
... .....++.++|++|+.. .+..+ +.+|+ .++... . . ..+....++++.++++.+++
T Consensus 329 ~~~---~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 329 IRN---PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI-----------TLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CCC---HHHHHHCCCEEeCcchhhCCCcCCCCHHHHh-----------hhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 111 01111335678888752 23222 44444 332110 0 0 01223445678899999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceE
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 273 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tv 273 (346)
.+. ..++++.+||||||||++||||| ||||++||. |.||
T Consensus 395 ~~~----------------~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 458 (506)
T PRK13549 395 KTA----------------SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAI 458 (506)
T ss_pred cCC----------------CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEE
Confidence 631 35888999999999999999999 999999984 8999
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
|++|| +.+.++|||++ +|++|+++..|+++++
T Consensus 459 i~~sHd~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 459 IVISSELPEVLGLSDRVL-VMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCCHHHHHHhCCEEE-EEECCEEEEEeccccC
Confidence 99999 57889999996 4999999999887654
No 270
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.8e-35 Score=300.16 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=146.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc--cCCCCCCCCceEEECc------
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNS------ 142 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~--~~~~~~p~~G~I~~~g------ 142 (346)
|+++|++++|++. . + |+++||+|.+||+++|+||||||||||+|+|+|++ + |++|+|.++|
T Consensus 1 l~~~~l~~~~~~~-~--~---l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~-----p~~G~i~~~~~~~~~~ 69 (520)
T TIGR03269 1 IEVKNLTKKFDGK-E--V---LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-----PTSGRIIYHVALCEKC 69 (520)
T ss_pred CEEEEEEEEECCe-E--e---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC-----CCceEEEEeccccccc
Confidence 5799999999653 2 4 67799999999999999999999999999999996 7 8999999973
Q ss_pred -----------------eeCCC--cccc--cc--cccCCCCccceeec-ccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 143 -----------------SVGDG--TYFL--QE--YTIPRGSNSFSLYD-TRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 143 -----------------~~i~~--~~~~--~~--~~~~r~~i~~~~~d-~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
.++.. .... .. ....++.+++++|+ ...+..+ ++.+|+.++.....
T Consensus 70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----------tv~~~l~~~~~~~~ 139 (520)
T TIGR03269 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD----------TVLDNVLEALEEIG 139 (520)
T ss_pred cccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCC----------CHHHHHHHHHHHcC
Confidence 11100 0000 00 00112345566664 2222222 44455544332111
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
.+..+.++++.++++.+++.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 140 -~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~ 201 (520)
T TIGR03269 140 -YEGKEAVGRAVDLIEMVQLSH-----------------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDP 201 (520)
T ss_pred -CCHHHHHHHHHHHHHHcCChh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCH
Confidence 223445678899999999987 46889999999999999999999 999999984
Q ss_pred -----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 -----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 -----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
|.|||+||| +.+..+||+++ +|++|+++..|++++++.
T Consensus 202 ~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 202 QTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI-WLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE-EEeCCEEeeecCHHHHHH
Confidence 789999999 56788999996 599999999998877654
No 271
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.4e-35 Score=271.44 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=142.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~---v---l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~~~---- 67 (251)
T PRK09544 3 SLVSLENVSVSFGQRR---V---LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNGKL---- 67 (251)
T ss_pred cEEEEeceEEEECCce---E---EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCcc----
Confidence 4799999999997543 3 777999999999999999999999999999999999 999999997621
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.++|++|+...+..+ ..++.+++.+.. ...++++.++++.+++.+
T Consensus 68 -----------~i~~v~q~~~~~~~l--------~~~~~~~~~~~~--------~~~~~~~~~~l~~~gl~~-------- 112 (251)
T PRK09544 68 -----------RIGYVPQKLYLDTTL--------PLTVNRFLRLRP--------GTKKEDILPALKRVQAGH-------- 112 (251)
T ss_pred -----------CEEEecccccccccc--------ChhHHHHHhccc--------cccHHHHHHHHHHcCChH--------
Confidence 346778775432111 012223332110 112345778999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.
T Consensus 113 ---------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 113 ---------LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred ---------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 45888999999999999999999 999999983 689999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+||++++ |+ +++++.|++++++..
T Consensus 184 i~~~~d~i~~-l~-~~i~~~g~~~~~~~~ 210 (251)
T PRK09544 184 VMAKTDEVLC-LN-HHICCSGTPEVVSLH 210 (251)
T ss_pred HHHhCCEEEE-EC-CceEeeCCHHHHhCC
Confidence 7889999965 86 479999999888654
No 272
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.8e-34 Score=267.06 Aligned_cols=201 Identities=14% Similarity=0.104 Sum_probs=143.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||++.|++.. + |+++||+|++|++++|+||||||||||+++|+|+ ++ |++|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~ 69 (248)
T PRK09580 1 MLSIKDLHVSVEDKA---I---LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDLLE 69 (248)
T ss_pred CeEEEEEEEEeCCee---e---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC-----CCceEEEECCCcccc
Confidence 489999999997532 4 7779999999999999999999999999999999 47 899999999987641
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ......+..++|++|+...+..+ .+ ..+...+..++..... ..........+++.++++.+++.+.
T Consensus 70 ~---~~~~~~~~~i~~~~q~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~------ 136 (248)
T PRK09580 70 L---SPEDRAGEGIFMAFQYPVEIPGV--SN-QFFLQTALNAVRSYRG-QEPLDRFDFQDLMEEKIALLKMPED------ 136 (248)
T ss_pred C---CHHHHhhcceEEEecCchhccch--hH-HHHHHHhhhhhhcccc-cccchHHHHHHHHHHHHHHcCCChh------
Confidence 1 01111234567888876544322 01 1111112222211000 0001122345677888999999642
Q ss_pred eeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++.+. +||||||||++||||| ||||++||. +.|||++|| +
T Consensus 137 ----------~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 137 ----------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred ----------hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 2455564 8999999999999999 999999984 789999999 4
Q ss_pred hhhcc-ccEEEEEecCCeEeecCCccc
Q 019066 280 DLLSL-TDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 280 ~~~~~-aDri~v~l~~G~iv~~g~~~~ 305 (346)
.+..+ ||++++ |++|+++..|+++.
T Consensus 207 ~~~~~~~d~i~~-l~~g~i~~~g~~~~ 232 (248)
T PRK09580 207 ILDYIKPDYVHV-LYQGRIVKSGDFTL 232 (248)
T ss_pred HHHhhhCCEEEE-EECCeEEEeCCHHH
Confidence 56666 899964 99999999988763
No 273
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=9.3e-35 Score=265.83 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=144.2
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+.++||+++|++.+ ...+ |+++||+|++||+++|+||||||||||+++|+|+++... |++|+|.++|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~--~~~G~i~~~g~~~~-- 75 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI---LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG--TTSGQILFNGQPRK-- 75 (226)
T ss_pred cceeecceeeeecCcccccc---ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCC--CCceEEEECCEECC--
Confidence 478999999996542 1225 666999999999999999999999999999999986221 58999999998874
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHH-HHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC-KAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~ 226 (346)
. ...++.+++++|+...+.++ +.+|+.+.... .............++.+ .++.+++.+
T Consensus 76 ----~-~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 135 (226)
T cd03234 76 ----P-DQFQKCVAYVRQDDILLPGLTVRETLTYTAIL---------RLPRKSSDAIRKKRVEDVLLRDLALTR------ 135 (226)
T ss_pred ----h-HHhcccEEEeCCCCccCcCCcHHHHHHHHHHh---------hcccccchHHHHHHHHHHHHHhhcchh------
Confidence 1 11244677888876665553 55555432210 00000011222234455 888888876
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEech--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-- 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH~-- 279 (346)
..++.+.+|||||+||++||||| ||||++||. +.|+|++||+
T Consensus 136 -----------~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~ 204 (226)
T cd03234 136 -----------IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPR 204 (226)
T ss_pred -----------hhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 45788999999999999999999 999999984 7899999993
Q ss_pred -hhhccccEEEEEecCCeEeecC
Q 019066 280 -DLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 280 -~~~~~aDri~v~l~~G~iv~~g 301 (346)
.+..+||++++ |++|++++.|
T Consensus 205 ~~~~~~~d~i~~-l~~G~i~~~g 226 (226)
T cd03234 205 SDLFRLFDRILL-LSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCEEEE-EeCCEEEecC
Confidence 58899999965 9999999865
No 274
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7.7e-35 Score=262.19 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=132.7
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccccc
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 152 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~ 152 (346)
++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 1 i~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 1 LKNISKKFGDKI---I---LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred CcceEEEECCEE---E---EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccchhh
Confidence 479999997532 4 777999999999999999999999999999999999 99999999999863100000
Q ss_pred ccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeee
Q 019066 153 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 232 (346)
Q Consensus 153 ~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 232 (346)
.....++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~~----------t~~e~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------------ 126 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFALIENE----------TVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNL------------ 126 (206)
T ss_pred HHHHHHhCeeEEecchhhccCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCchh------------
Confidence 0111234567777765544332 3334433322111 1123445677889999999976
Q ss_pred echhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhcccc
Q 019066 233 VDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 286 (346)
Q Consensus 233 v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~~aD 286 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| .....+||
T Consensus 127 -----~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d 201 (206)
T TIGR03608 127 -----KLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQAD 201 (206)
T ss_pred -----hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcC
Confidence 45888999999999999999999 999999983 789999999 33446899
Q ss_pred EEEE
Q 019066 287 RARI 290 (346)
Q Consensus 287 ri~v 290 (346)
++++
T Consensus 202 ~i~~ 205 (206)
T TIGR03608 202 RVIE 205 (206)
T ss_pred EEEe
Confidence 9953
No 275
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-34 Score=263.09 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=137.9
Q ss_pred cCCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 66 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 66 ~~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+.++|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++
T Consensus 7 ~~~~~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i 75 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEP---V---FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTA 75 (214)
T ss_pred CCcceEEEeeEEEecCCce---e---eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEc
Confidence 3456899999999997643 4 777999999999999999999999999999999999 9999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
.. .. .++.++|++|+...+..+ +.+|+.+ ...... ...++.+.++++.+++.+
T Consensus 76 ~~------~~-~~~~i~~~~q~~~~~~~~t~~e~l~~-----------~~~~~~----~~~~~~~~~~l~~~~l~~---- 129 (214)
T PRK13543 76 TR------GD-RSRFMAYLGHLPGLKADLSTLENLHF-----------LCGLHG----RRAKQMPGSALAIVGLAG---- 129 (214)
T ss_pred cc------hh-hhhceEEeecCcccccCCcHHHHHHH-----------HHHhcC----CcHHHHHHHHHHHcCChh----
Confidence 51 11 123466777665444332 4444432 211100 113356778899999986
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||+ ||||++||. +.|+|++||
T Consensus 130 -------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 130 -------------YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred -------------hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 45888999999999999999999 999999984 799999999
Q ss_pred -hhhhccccEEEEEec
Q 019066 279 -GDLLSLTDRARIRTY 293 (346)
Q Consensus 279 -~~~~~~aDri~v~l~ 293 (346)
+++.++||++++ ++
T Consensus 197 ~~~~~~~~~~i~~-l~ 211 (214)
T PRK13543 197 AYAAPPVRTRMLT-LE 211 (214)
T ss_pred hhhhhhhcceEEE-Ee
Confidence 578899999964 64
No 276
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.7e-34 Score=266.01 Aligned_cols=170 Identities=15% Similarity=0.201 Sum_probs=129.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceee-cccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY-DTRS 170 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~-d~~~ 170 (346)
|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .....++.++|+++ +...
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~-----~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVPWK-----RRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccc-----cchhhcccEEEEcCCcccc
Confidence 667999999999999999999999999999999999 999999999987531 01112335667663 3333
Q ss_pred cccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 171 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 171 ~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
+..+ +.+++.+. .... ........+++.++++.+++.+ ..++++.+||||
T Consensus 107 ~~~~tv~e~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LS~G 157 (236)
T cd03267 107 WWDLPVIDSFYLL-----------AAIY-DLPPARFKKRLDELSELLDLEE-----------------LLDTPVRQLSLG 157 (236)
T ss_pred CCCCcHHHHHHHH-----------HHHc-CCCHHHHHHHHHHHHHHcCChh-----------------HhcCChhhCCHH
Confidence 3222 44444322 1111 1122344567788999999976 457889999999
Q ss_pred HHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecC
Q 019066 250 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 250 qrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g 301 (346)
||||++||||| ||||++||. +.|+|++|| +.+..+||++++ |++|++++.|
T Consensus 158 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~-l~~G~i~~~g 236 (236)
T cd03267 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLV-IDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEE-EeCCEEEecC
Confidence 99999999999 999999983 689999999 567889999965 9999998764
No 277
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-34 Score=294.91 Aligned_cols=205 Identities=14% Similarity=0.190 Sum_probs=150.0
Q ss_pred CCcEEEeeeEEEeCC---CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC-ce
Q 019066 68 GSLTDAKNKILSYTP---GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SS 143 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~---~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~-g~ 143 (346)
.++|+++||+++|++ +.. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ |.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~-~i---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~g~ 347 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVV-KA---VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVNVRVGD 347 (520)
T ss_pred CceEEEeccEEEeccCCCCCc-eE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEecCC
Confidence 568999999999953 211 24 777999999999999999999999999999999999 999999996 64
Q ss_pred e---CCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC
Q 019066 144 V---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 219 (346)
Q Consensus 144 ~---i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 219 (346)
+ +... ........++.++|++|+...+..+ +.+|+. +.... ..+....++++.++++.+++.
T Consensus 348 ~~~~~~~~-~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~-----------~~~~~--~~~~~~~~~~~~~~l~~~~l~ 413 (520)
T TIGR03269 348 EWVDMTKP-GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLT-----------EAIGL--ELPDELARMKAVITLKMVGFD 413 (520)
T ss_pred cccccccc-chhhHHHHhhhEEEEccCcccCCCCcHHHHHH-----------HHHHc--CCCHHHHHHHHHHHHHhCCCC
Confidence 3 2100 0000011133567777775544333 444443 22110 011233456788999999997
Q ss_pred cccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceE
Q 019066 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 273 (346)
Q Consensus 220 ~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tv 273 (346)
+... .+.+++++.+||||||||++||||| ||||++||. |.||
T Consensus 414 ~~~~------------~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 481 (520)
T TIGR03269 414 EEKA------------EEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481 (520)
T ss_pred Cccc------------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEE
Confidence 4100 0025889999999999999999999 999999984 7899
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
|+||| +.+.++|||+++ |++|++++.|++++++.
T Consensus 482 i~vsHd~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 482 IIVSHDMDFVLDVCDRAAL-MRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEEeCCHHHHHHhCCEEEE-EECCEEEEECCHHHHHh
Confidence 99999 578889999965 99999999998877643
No 278
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.4e-34 Score=293.89 Aligned_cols=183 Identities=11% Similarity=0.123 Sum_probs=139.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|+++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 322 ~i~~~~v~f~y~~~~~--~---l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~-- 389 (547)
T PRK10522 322 TLELRNVTFAYQDNGF--S---VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVTA-- 389 (547)
T ss_pred eEEEEEEEEEeCCCCe--E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCC--
Confidence 5999999999975443 3 777999999999999999999999999999999999 999999999999861
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
+...+.+...++++|++.++..++.+|- ....++.+.++++.+++..... .+++.
T Consensus 390 -------------~~~~~~~~~i~~v~q~~~lf~~ti~~n~-----------~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 444 (547)
T PRK10522 390 -------------EQPEDYRKLFSAVFTDFHLFDQLLGPEG-----------KPANPALVEKWLERLKMAHKLE-LEDGR 444 (547)
T ss_pred -------------CCHHHHhhheEEEecChhHHHHhhcccc-----------CchHHHHHHHHHHHcCCchhhh-ccccC
Confidence 1111222233445555556666655540 1233456778899998876431 11111
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~~~ 282 (346)
-...+||||||||++||||| ||||++||. ++|+|+||| ....
T Consensus 445 -----------~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~ 513 (547)
T PRK10522 445 -----------ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF 513 (547)
T ss_pred -----------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH
Confidence 01458999999999999999 999999873 689999999 4556
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
..||+|+ +|++|++++..
T Consensus 514 ~~~d~i~-~l~~G~i~e~~ 531 (547)
T PRK10522 514 IHADRLL-EMRNGQLSELT 531 (547)
T ss_pred HhCCEEE-EEECCEEEEec
Confidence 6799996 59999999873
No 279
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.5e-34 Score=261.28 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=134.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
+.++++++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 88 (224)
T cd03220 23 LGILGRKGEVGEFW---A---LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVSSL--- 88 (224)
T ss_pred hhhhhhhhhcCCeE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEchh---
Confidence 77888999997643 3 777999999999999999999999999999999999 999999999987530
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.. . ...++ ....+.+|+.+ +.... .......++++.++++.+++.+
T Consensus 89 -----~~-~--~~~~~----~~~tv~enl~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 134 (224)
T cd03220 89 -----LG-L--GGGFN----PELTGRENIYL-----------NGRLL-GLSRKEIDEKIDEIIEFSELGD---------- 134 (224)
T ss_pred -----hc-c--cccCC----CCCcHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 00 0 01111 01124444433 21111 1122344567888999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 135 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 135 -------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 45788999999999999999999 999999984 689999999 56788
Q ss_pred cccEEEEEecCCeEeecC
Q 019066 284 LTDRARIRTYLGELLGIP 301 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g 301 (346)
+||++++ |++|++++.|
T Consensus 208 ~~d~i~~-l~~G~i~~~g 224 (224)
T cd03220 208 LCDRALV-LEKGKIRFDG 224 (224)
T ss_pred hCCEEEE-EECCEEEecC
Confidence 9999965 9999998765
No 280
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=294.09 Aligned_cols=194 Identities=11% Similarity=0.104 Sum_probs=146.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|+ . + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 263 ~~~l~~~~l~~~~~--~---~---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~~~~ 329 (510)
T PRK09700 263 ETVFEVRNVTSRDR--K---K---VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDISP 329 (510)
T ss_pred CcEEEEeCccccCC--C---c---ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEECCC
Confidence 45899999999763 2 3 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccccccCCCCccceeecc---cccccchhhchHhhHHHHHhhhhcchhh----c----cCCChHHHHHHHHHHHHHc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT---RSLSDDASDNINMIKLWIMEGVRHGELV----I----RRSDSSSLRNRMRCKAHKI 216 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~---~~~~~~v~qn~~~~~~~v~~~i~~~~~~----~----~~~~~~~~~~~~~~~l~~~ 216 (346)
.. .....++.++|++|+. ..+..+ ++.+|+.++... . ........++++.++++.+
T Consensus 330 ~~---~~~~~~~~i~~v~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (510)
T PRK09700 330 RS---PLDAVKKGMAYITESRRDNGFFPNF----------SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL 396 (510)
T ss_pred CC---HHHHHHCCcEEccCccccCCCcCCC----------cHHHHhccccccccccccccccccChHHHHHHHHHHHHhc
Confidence 10 0011133567887763 223222 333444332110 0 0011223345678999999
Q ss_pred CCC-cccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C
Q 019066 217 GCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 270 (346)
Q Consensus 217 ~l~-~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g 270 (346)
++. + ..++++.+||||||||++||||| ||||++||. |
T Consensus 397 ~l~~~-----------------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g 459 (510)
T PRK09700 397 ALKCH-----------------SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG 459 (510)
T ss_pred CCCCC-----------------CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence 996 4 35889999999999999999999 999999984 8
Q ss_pred ceEEEEec--hhhhccccEEEEEecCCeEeecCCccc
Q 019066 271 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 271 ~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
.|||+||| +.+..+|||+++ |++|++++.++..+
T Consensus 460 ~tvi~vsHd~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 495 (510)
T PRK09700 460 KVILMVSSELPEIITVCDRIAV-FCEGRLTQILTNRD 495 (510)
T ss_pred CEEEEEcCCHHHHHhhCCEEEE-EECCEEEEEecCcc
Confidence 89999999 578899999964 99999998876633
No 281
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-34 Score=312.82 Aligned_cols=227 Identities=13% Similarity=0.093 Sum_probs=188.1
Q ss_pred hhhhhHHHHHHhhhhhhhhc----c-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCC
Q 019066 46 QRRRDAVFREVLQSYDQLRT----R-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 114 (346)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~----~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsG 114 (346)
...+.+|+.+..+.++|.+- . ....|+|+|++.+|..+.+ .+ |+||||+|++||.+||||.+|||
T Consensus 1103 ~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp-~V---Lk~is~~I~p~eKVGIVGRTGaG 1178 (1381)
T KOG0054|consen 1103 NMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLP-LV---LKGISFTIKPGEKVGIVGRTGAG 1178 (1381)
T ss_pred cchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCc-ch---hcCceEEEcCCceEEEeCCCCCC
Confidence 44556788888876555111 0 1236999999999977643 25 66699999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccC--CCCccceeecccccccchhhchHhhHHHHHhhhhc
Q 019066 115 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP--RGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 192 (346)
Q Consensus 115 KSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~--r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~ 192 (346)
||||+++|-++.+ |.+|+|.+||.|+. ...+. |++++.+|||+.+|.|++..|+..+.
T Consensus 1179 KSSL~~aLFRl~e-----~~~G~I~IDgvdI~------~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~--------- 1238 (1381)
T KOG0054|consen 1179 KSSLILALFRLVE-----PAEGEILIDGVDIS------KIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD--------- 1238 (1381)
T ss_pred HHHHHHHHHHhcC-----ccCCeEEEcCeecc------cccHHHHHhcCeeeCCCCceecCccccccCccc---------
Confidence 9999999999999 99999999999997 33332 55677777777777777766665432
Q ss_pred chhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------Ccc
Q 019066 193 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 263 (346)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEP 263 (346)
+-.++++.++|+.++|.+.+.++|.|+|+.|.|.| .++|-||||.+++|||| ||+
T Consensus 1239 ----------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG------~N~SvGQRQLlCLARALLr~skILvLDEA 1302 (1381)
T KOG0054|consen 1239 ----------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGG------ENFSVGQRQLLCLARALLRKSKILVLDEA 1302 (1381)
T ss_pred ----------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCC------ccCChHHHHHHHHHHHHhccCCEEEEecc
Confidence 33467899999999999999999999999999995 49999999999999999 999
Q ss_pred ccCCCC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 264 YLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 264 ts~Ld~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
|++.|. ++|||.|+| +.+.+ ||||+| |++|+++|.++|.++++++...+
T Consensus 1303 TAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlV-ld~G~v~EfdsP~~Ll~~~~S~f 1368 (1381)
T KOG0054|consen 1303 TASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLV-LDAGRVVEFDSPAELLSDKDSLF 1368 (1381)
T ss_pred cccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEE-eeCCeEeecCChHHHHhCCcchH
Confidence 999984 999999999 56777 999965 99999999999999998866543
No 282
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=252.41 Aligned_cols=181 Identities=10% Similarity=0.081 Sum_probs=143.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
++++++.+.-++.. + |+++||++++||+++|+||||||||||+|+++.+.. |++|.++|.|+++..
T Consensus 4 le~kq~~y~a~~a~---i---l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~vs~--- 69 (223)
T COG4619 4 LELKQVGYLAGDAK---I---LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDVST--- 69 (223)
T ss_pred hHHHHHHhhcCCCe---e---ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCccccc---
Confidence 45555554433332 3 777999999999999999999999999999999999 999999999999861
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
+.+...|.-..|+.|.+.+|..+|.+|+.|+...+.. ...+..+..+++++++++.+
T Consensus 70 ------------~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~r---r~dr~aa~~llar~~l~~~~-------- 126 (223)
T COG4619 70 ------------LKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR---RPDRAAALDLLARFALPDSI-------- 126 (223)
T ss_pred ------------cChHHHHHHHHHHHcCccccccchhhccccchHHhcc---CCChHHHHHHHHHcCCchhh--------
Confidence 2233333344455566666677777777777665433 22457788899999999864
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
+++...+|||||+||++|+|-| |||||+||+ +.+++.||| +.+.
T Consensus 127 --------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~ 198 (223)
T COG4619 127 --------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI 198 (223)
T ss_pred --------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHh
Confidence 7899999999999999999998 999999985 889999999 5678
Q ss_pred ccccEEEEEecCCeE
Q 019066 283 SLTDRARIRTYLGEL 297 (346)
Q Consensus 283 ~~aDri~v~l~~G~i 297 (346)
+.+|+++ .+..|.+
T Consensus 199 rha~k~i-tl~~G~~ 212 (223)
T COG4619 199 RHADKVI-TLQPGHA 212 (223)
T ss_pred hhhheEE-EeccCcc
Confidence 8999995 5887764
No 283
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.3e-34 Score=254.56 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=121.9
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++||+++|++. . + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~-~--~---l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~~---- 65 (180)
T cd03214 1 EVENLSVGYGGR-T--V---LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLAS---- 65 (180)
T ss_pred CeeEEEEEECCe-e--e---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCc----
Confidence 578999999753 2 4 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
+.....+...++++| +++.+++.+
T Consensus 66 -----------~~~~~~~~~i~~~~q----------------------------------~l~~~gl~~----------- 89 (180)
T cd03214 66 -----------LSPKELARKIAYVPQ----------------------------------ALELLGLAH----------- 89 (180)
T ss_pred -----------CCHHHHHHHHhHHHH----------------------------------HHHHcCCHh-----------
Confidence 100000001111111 677788876
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~ 283 (346)
..++.+.+|||||+||++||||| ||||++||. +.|+|++|| +.+.+
T Consensus 90 ------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 90 ------LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred ------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 34778899999999999999999 999999983 579999999 56778
Q ss_pred cccEEEEEecCCeEeecC
Q 019066 284 LTDRARIRTYLGELLGIP 301 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g 301 (346)
+||++++ |++|++++.|
T Consensus 164 ~~d~~~~-l~~g~i~~~~ 180 (180)
T cd03214 164 YADRVIL-LKDGRIVAQG 180 (180)
T ss_pred hCCEEEE-EECCEEEecC
Confidence 9999965 9999998654
No 284
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.4e-34 Score=259.07 Aligned_cols=174 Identities=17% Similarity=0.182 Sum_probs=134.6
Q ss_pred EEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|++... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~~~~~~~i---l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g-~---- 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT---LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG-S---- 67 (204)
T ss_pred CEEeEEEEecCCCCccccce---eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC-E----
Confidence 579999999976420 014 777999999999999999999999999999999999 9999999988 1
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
++|++|++..+ ..++.+|+.++... . .++..++++.+++...+..+|.|
T Consensus 68 ------------i~~~~q~~~l~-----------~~t~~enl~~~~~~-----~---~~~~~~~~~~~~l~~~~~~~~~~ 116 (204)
T cd03250 68 ------------IAYVSQEPWIQ-----------NGTIRENILFGKPF-----D---EERYEKVIKACALEPDLEILPDG 116 (204)
T ss_pred ------------EEEEecCchhc-----------cCcHHHHhccCCCc-----C---HHHHHHHHHHcCcHHHHHhccCc
Confidence 25666665433 23555665543211 1 12345567777777767777777
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
+++.++.. +.+||+|||||++||||| ||||++||. +.|+|++|| +.
T Consensus 117 ~~~~~~~~------~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~ 190 (204)
T cd03250 117 DLTEIGEK------GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190 (204)
T ss_pred ccceecCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 77776544 679999999999999999 999999874 689999999 45
Q ss_pred hhccccEEEEEecCCe
Q 019066 281 LLSLTDRARIRTYLGE 296 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~ 296 (346)
+.. ||++++ |++|+
T Consensus 191 ~~~-~d~i~~-l~~G~ 204 (204)
T cd03250 191 LPH-ADQIVV-LDNGR 204 (204)
T ss_pred Hhh-CCEEEE-EeCCC
Confidence 666 999964 98874
No 285
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.7e-34 Score=268.06 Aligned_cols=188 Identities=14% Similarity=0.174 Sum_probs=142.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
++++||++. . + |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|+++....
T Consensus 1 ~~~~~l~~~----~---~---l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-----~-~G~i~~~g~~i~~~~- 63 (248)
T PRK03695 1 MQLNDVAVS----T---R---LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----G-SGSIQFAGQPLEAWS- 63 (248)
T ss_pred Ccccccchh----c---e---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----C-CeEEEECCEecCcCC-
Confidence 357788875 1 3 777999999999999999999999999999999986 5 899999999874110
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. ...++.++|++|+...+..+ ++.+|+.+.... ........+++.++++.+++.+
T Consensus 64 ~---~~~~~~i~~v~q~~~~~~~~----------tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~---------- 118 (248)
T PRK03695 64 A---AELARHRAYLSQQQTPPFAM----------PVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDD---------- 118 (248)
T ss_pred H---HHHhhheEEecccCccCCCc----------cHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHh----------
Confidence 0 00122356777665433222 344444433111 1112344567889999999986
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc----------------CccccCCCC----------------CceEEEEec
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++||
T Consensus 119 -------~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH 191 (248)
T PRK03695 119 -------KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191 (248)
T ss_pred -------HhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 45888999999999999999876 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|++++.|++++++.
T Consensus 192 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 192 DLNHTLRHADRVWL-LKQGKLLASGRRDEVLT 222 (248)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEECCHHHHhC
Confidence 568899999965 99999999998877754
No 286
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.6e-34 Score=255.98 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=132.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~~~- 68 (204)
T PRK13538 1 MLEARNLACERDERI---L---FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIRRQ- 68 (204)
T ss_pred CeEEEEEEEEECCEE---E---EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccc-
Confidence 589999999997532 4 677999999999999999999999999999999999 9999999999887511
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.+++++++...+..+ ++.+|+.+...... ...++++.++++.+++.+
T Consensus 69 ----~~~~~~~~~~~~~~~~~~~~~----------tv~e~l~~~~~~~~----~~~~~~~~~~l~~~gl~~--------- 121 (204)
T PRK13538 69 ----RDEYHQDLLYLGHQPGIKTEL----------TALENLRFYQRLHG----PGDDEALWEALAQVGLAG--------- 121 (204)
T ss_pred ----hHHhhhheEEeCCccccCcCC----------cHHHHHHHHHHhcC----ccHHHHHHHHHHHcCCHH---------
Confidence 011133456666654433322 34444433221111 123467888999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +++.
T Consensus 122 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 122 --------FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred --------HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 45888999999999999999999 999999984 789999999 5676
Q ss_pred ccccEEE
Q 019066 283 SLTDRAR 289 (346)
Q Consensus 283 ~~aDri~ 289 (346)
.+.+|++
T Consensus 194 ~~~~~~~ 200 (204)
T PRK13538 194 SDKVRKL 200 (204)
T ss_pred cCCceEE
Confidence 7677884
No 287
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-33 Score=258.44 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=133.4
Q ss_pred cEEEeeeEEEeCC----CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc--e
Q 019066 70 LTDAKNKILSYTP----GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS--S 143 (346)
Q Consensus 70 ~l~~~~l~~~y~~----~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g--~ 143 (346)
||+++||+++|+. +....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~g~ 72 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV---LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHEGA 72 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE---EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecCCC
Confidence 4899999999963 111225 666999999999999999999999999999999999 9999999984 2
Q ss_pred --eCCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 144 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 144 --~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
++............++.++|++|+...+..+ +.+++. +..... ........+++.++++.+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~ 140 (224)
T TIGR02324 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVA-----------EPLLER-GVPREAARARARELLARLNIPE 140 (224)
T ss_pred ccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCch
Confidence 3320000000011233567777776544433 444433 221111 1122344567888999999975
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
. ..++++.+||||||||++||||| ||||++||. |.|+|+
T Consensus 141 ~----------------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 204 (224)
T TIGR02324 141 R----------------LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIG 204 (224)
T ss_pred h----------------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 2 24678999999999999999999 999999984 789999
Q ss_pred Eec--hhhhccccEEEE
Q 019066 276 VTH--GDLLSLTDRARI 290 (346)
Q Consensus 276 iTH--~~~~~~aDri~v 290 (346)
+|| +.+..+||+++.
T Consensus 205 vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 205 IFHDEEVRELVADRVMD 221 (224)
T ss_pred EeCCHHHHHHhcceeEe
Confidence 999 456789999953
No 288
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=292.28 Aligned_cols=201 Identities=18% Similarity=0.193 Sum_probs=157.0
Q ss_pred CcEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
++|+++|++++|+++. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEV---LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDVAT 74 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcCc
Confidence 4799999999996421 1124 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
....+.....++.++|++|+...+.++ +.+|+.+.. ... .....+.++++.++++.+++.+
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~-----------~~~-~~~~~~~~~~~~~~l~~lgl~~------ 136 (648)
T PRK10535 75 LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA-----------VYA-GLERKQRLLRAQELLQRLGLED------ 136 (648)
T ss_pred CCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHH-----------HHc-CCCHHHHHHHHHHHHHHCCChh------
Confidence 111111112245678888887666554 566654321 100 1123455678889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~ 280 (346)
..++.+.+||+||+||++||||| ||||++||. +.|+|++|| ..
T Consensus 137 -----------~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 137 -----------RVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred -----------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 46888999999999999999999 999999984 799999999 33
Q ss_pred hhccccEEEEEecCCeEeecCCccccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
....|||+++ |++|++++.|++++..
T Consensus 206 ~~~~~d~i~~-l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 206 VAAQAERVIE-IRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhCCEEEE-EECCEEEeecCccccc
Confidence 4456999964 9999999999999886
No 289
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.1e-34 Score=256.52 Aligned_cols=177 Identities=13% Similarity=0.130 Sum_probs=131.3
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
..|+++|++++|+.... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 5 ~~l~~~~l~~~~~~~~~-~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~ 75 (207)
T cd03369 5 GEIEVENLSVRYAPDLP-PV---LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDISTI 75 (207)
T ss_pred CeEEEEEEEEEeCCCCc-cc---ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhHHC
Confidence 46999999999975321 14 667999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|++..+. .++.+|+.+... .. .+++.++++ +
T Consensus 76 ----~~~~~~~~i~~v~q~~~~~~-----------~tv~~~l~~~~~----~~----~~~~~~~l~---~---------- 119 (207)
T cd03369 76 ----PLEDLRSSLTIIPQDPTLFS-----------GTIRSNLDPFDE----YS----DEEIYGALR---V---------- 119 (207)
T ss_pred ----CHHHHHhhEEEEecCCcccC-----------ccHHHHhcccCC----CC----HHHHHHHhh---c----------
Confidence 00011345677777654332 244455432110 01 122333333 1
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 120 -----------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 120 -----------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred -----------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 345789999999999999999 999999984 789999999 4555
Q ss_pred ccccEEEEEecCCeEeecCCc
Q 019066 283 SLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~ 303 (346)
. ||++++ |++|++++.|++
T Consensus 189 ~-~d~v~~-l~~g~i~~~g~~ 207 (207)
T cd03369 189 D-YDKILV-MDAGEVKEYDHP 207 (207)
T ss_pred h-CCEEEE-EECCEEEecCCC
Confidence 5 999965 999999988753
No 290
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.3e-34 Score=288.90 Aligned_cols=200 Identities=16% Similarity=0.132 Sum_probs=147.6
Q ss_pred CCcEEEeeeEEEeCC--CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEECcee
Q 019066 68 GSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSV 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~--~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~g~~ 144 (346)
.++|+++|+++.|++ +.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|++
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~--~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~ 324 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRK--R---VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKP 324 (500)
T ss_pred CceEEEeCCccccccccccc--c---cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEE
Confidence 347999999999942 222 4 677999999999999999999999999999999998 7 79999999998
Q ss_pred CCCcccccccccCCCCccceeeccc---ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~---~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+.... .....++.++|++|+.. .+..+ +.+|+.+... ... ...........++++.++++.+++..
T Consensus 325 ~~~~~---~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~ 394 (500)
T TIGR02633 325 VDIRN---PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVL---KSF----CFKMRIDAAAELQIIGSAIQRLKVKT 394 (500)
T ss_pred CCCCC---HHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhh---hhh----ccCCcCCHHHHHHHHHHHHHhcCccC
Confidence 74110 11112345778888752 33332 4444432110 000 00001112334567889999999964
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
. ..++++.+||||||||++||||| ||||++||. |.|||+
T Consensus 395 ~----------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 458 (500)
T TIGR02633 395 A----------------SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIV 458 (500)
T ss_pred C----------------CccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 2 24888999999999999999999 999999984 889999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCcc
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~ 304 (346)
+|| +.+.++|||+++ |++|+++...+.+
T Consensus 459 vsHd~~~~~~~~d~v~~-l~~G~i~~~~~~~ 488 (500)
T TIGR02633 459 VSSELAEVLGLSDRVLV-IGEGKLKGDFVNH 488 (500)
T ss_pred ECCCHHHHHHhCCEEEE-EECCEEEEEEccc
Confidence 999 578899999975 9999999876543
No 291
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.1e-33 Score=254.49 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=131.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||++.|++.. + |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (201)
T cd03231 1 LEADELTCERDGRA---L---FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLDF--- 66 (201)
T ss_pred CEEEEEEEEeCCce---e---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc---
Confidence 57999999997643 3 677999999999999999999999999999999999 999999999988641
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++|+...+... ++.+|+.+... ...++++.++++.+++.+
T Consensus 67 --~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~---------- 117 (201)
T cd03231 67 --QRDSIARGLLYLGHAPGIKTTL----------SVLENLRFWHA-------DHSDEQVEEALARVGLNG---------- 117 (201)
T ss_pred --ccHHhhhheEEeccccccCCCc----------CHHHHHHhhcc-------cccHHHHHHHHHHcCChh----------
Confidence 0111233556666654333222 44445443211 012456788999999986
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| .....
T Consensus 118 -------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 118 -------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred -------hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 45788999999999999999999 999999984 789999999 45777
Q ss_pred cccEEEE
Q 019066 284 LTDRARI 290 (346)
Q Consensus 284 ~aDri~v 290 (346)
.|+++++
T Consensus 191 ~~~~~~~ 197 (201)
T cd03231 191 AGARELD 197 (201)
T ss_pred ccceeEe
Confidence 8999953
No 292
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.6e-34 Score=288.05 Aligned_cols=196 Identities=12% Similarity=0.094 Sum_probs=146.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 255 ~~~l~~~~l~~~--------~---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~i~~ 318 (501)
T PRK10762 255 EVRLKVDNLSGP--------G---VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVT 318 (501)
T ss_pred CcEEEEeCcccC--------C---cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 357999999851 2 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeeccc---ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC-ccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSV 222 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~---~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~ 222 (346)
.. .....++.++|++|+.. .+..+ +.+|+.+....... ...........++++.++++.+++. +
T Consensus 319 ~~---~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~l~~~-- 387 (501)
T PRK10762 319 RS---PQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFS------RAGGSLKHADEQQAVSDFIRLFNIKTP-- 387 (501)
T ss_pred CC---HHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhc------ccccccCHHHHHHHHHHHHHhcCCCCC--
Confidence 10 01112345788888752 23322 44444321100000 0000011233456788999999995 4
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEe
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|
T Consensus 388 ---------------~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivt 452 (501)
T PRK10762 388 ---------------SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452 (501)
T ss_pred ---------------CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEc
Confidence 35889999999999999999999 999999984 78999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
| +.+..+||++++ |++|+++..|+++++
T Consensus 453 Hd~~~~~~~~d~v~~-l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 453 SEMPEVLGMSDRILV-MHEGRISGEFTREQA 482 (501)
T ss_pred CCHHHHHhhCCEEEE-EECCEEEEEeccccC
Confidence 9 578899999965 999999999887654
No 293
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-33 Score=280.23 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=145.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++||++.|+++....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 19 ~~mL~lknL~~~~~~~~~~~I---L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~~- 89 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYA---LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAAL- 89 (549)
T ss_pred cceeEEEEEEEecCCCccceE---EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeee-
Confidence 458999999999977532225 677999999999999999999999999999999999 99999999997521
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
..+.......+ ++.+|+.+..... ........+++.++++.+++.+
T Consensus 90 ----------------i~~~~~l~~~l----------TV~EnL~l~~~~~-~~~~~e~~e~i~elLe~lgL~~------- 135 (549)
T PRK13545 90 ----------------IAISSGLNGQL----------TGIENIELKGLMM-GLTKEKIKEIIPEIIEFADIGK------- 135 (549)
T ss_pred ----------------EEeccccCCCC----------cHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 00111111111 3334433321111 1123444566788999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|++|| +.
T Consensus 136 ----------~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 136 ----------FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 45888999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+||++++ |++|++++.|++++++..
T Consensus 206 i~~l~DrIiv-L~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 206 VKSFCTKALW-LHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhh
Confidence 8889999965 999999999999887654
No 294
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.2e-33 Score=265.16 Aligned_cols=202 Identities=18% Similarity=0.109 Sum_probs=150.5
Q ss_pred HHHHHHhhhhhhhhcc-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 51 AVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 51 ~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+-+.+.++.+.++... ..+.|+++|+++. . .. + |+++||+|++||+++|+||||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~--~-~~--v---L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV--G-AP--V---LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccccccCCCCCeEEEEEEEEe--c-cc--c---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456677666554322 2346999999985 2 22 3 7779999999999999999999999999999999
Q ss_pred ccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHH
Q 019066 126 FENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 205 (346)
Q Consensus 126 ~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~ 205 (346)
++ |++|+|.++|. ++|++|+...+.. ++.+|+.++... .
T Consensus 87 ~~-----p~~G~I~i~g~-----------------i~yv~q~~~l~~~-----------tv~enl~~~~~~------~-- 125 (282)
T cd03291 87 LE-----PSEGKIKHSGR-----------------ISFSSQFSWIMPG-----------TIKENIIFGVSY------D-- 125 (282)
T ss_pred CC-----CCCcEEEECCE-----------------EEEEeCccccccc-----------CHHHHhhccccc------C--
Confidence 99 99999999872 2567766543322 344555433210 0
Q ss_pred HHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------
Q 019066 206 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------- 269 (346)
Q Consensus 206 ~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------- 269 (346)
..++.++++.+++.+.+..++.++++.+++. +.+||||||||++||||| ||||++||.
T Consensus 126 ~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~------~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~ 199 (282)
T cd03291 126 EYRYKSVVKACQLEEDITKFPEKDNTVLGEG------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199 (282)
T ss_pred HHHHHHHHHHhCCHHHHHhccccccceecCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 1223455666677665656666666665443 679999999999999999 999999884
Q ss_pred ---------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ---------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ---------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.|||++|| +.+ ..||++++ |++|++++.|+++++...
T Consensus 200 ~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~~-l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 200 ESCVCKLMANKTRILVTSKMEHL-KKADKILI-LHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHhhCCCEEEEEeCChHHH-HhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 789999999 344 57999965 999999999999888654
No 295
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.1e-33 Score=315.78 Aligned_cols=197 Identities=14% Similarity=0.113 Sum_probs=159.8
Q ss_pred CCcEEEeeeEEEeCC-CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~-~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.+.|+++||++.|++ +.. + |+|+||+|.+||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~--a---L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI~ 995 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRP--A---VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDIE 995 (2272)
T ss_pred CceEEEEeEEEEecCCCce--E---EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEECc
Confidence 457999999999963 332 5 666999999999999999999999999999999999 99999999999985
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
. .....++.+++++|+...+..+ |.+++.++.. .. ..+..+.++++.++++.++|.+
T Consensus 996 ~-----~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~-----------lk-g~~~~~~~~~v~~lL~~vgL~~----- 1053 (2272)
T TIGR01257 996 T-----NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQ-----------LK-GRSWEEAQLEMEAMLEDTGLHH----- 1053 (2272)
T ss_pred c-----hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHH-----------hc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 1 1111245678888887666554 6666554321 11 1123445678899999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--h
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 279 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~ 279 (346)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 1054 ------------~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmd 1121 (2272)
T TIGR01257 1054 ------------KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121 (2272)
T ss_pred ------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 56899999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+||||++ |++|+++..|+++.+...
T Consensus 1122 ea~~laDrI~i-L~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1122 EADLLGDRIAI-ISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHhCCEEEE-EECCEEEEecCHHHHHHh
Confidence 78889999975 999999999998877543
No 296
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.8e-33 Score=252.37 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=129.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++.. + |+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 68 (198)
T TIGR01189 1 LAARNLACSRGERM---L---FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALAEQR- 68 (198)
T ss_pred CEEEEEEEEECCEE---E---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcccch-
Confidence 57899999997632 4 777999999999999999999999999999999999 99999999999875210
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
...++.++|++|+...+..+ ++.+|+.+...... .. ++++.++++.+++.+
T Consensus 69 ----~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~~----~~-~~~~~~~l~~~~l~~---------- 119 (198)
T TIGR01189 69 ----DEPHRNILYLGHLPGLKPEL----------SALENLHFWAAIHG----GA-QRTIEDALAAVGLTG---------- 119 (198)
T ss_pred ----HHhhhheEEeccCcccccCC----------cHHHHHHHHHHHcC----Cc-HHHHHHHHHHcCCHH----------
Confidence 11133556666654433322 33344433211111 11 346788999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEechhhhccc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHGDLLSLT 285 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH~~~~~~a 285 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||+...-.|
T Consensus 120 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 192 (198)
T TIGR01189 120 -------FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE 192 (198)
T ss_pred -------HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc
Confidence 45888999999999999999999 999999984 7899999996554457
Q ss_pred cEE
Q 019066 286 DRA 288 (346)
Q Consensus 286 Dri 288 (346)
+++
T Consensus 193 ~~~ 195 (198)
T TIGR01189 193 ARE 195 (198)
T ss_pred eEE
Confidence 777
No 297
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-33 Score=253.89 Aligned_cols=167 Identities=13% Similarity=0.162 Sum_probs=127.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~-- 68 (207)
T PRK13539 2 MLEGEDLACVRGGRV---L---FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDD-- 68 (207)
T ss_pred EEEEEeEEEEECCeE---E---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeCcc--
Confidence 589999999997532 4 677999999999999999999999999999999999 999999999987631
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. . .++.++|++++...+..+ +.+|+.+.. .... . ..+++.++++.+++.+
T Consensus 69 -~---~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~-----------~~~~---~--~~~~~~~~l~~~~l~~-------- 119 (207)
T PRK13539 69 -P---D-VAEACHYLGHRNAMKPALTVAENLEFWA-----------AFLG---G--EELDIAAALEAVGLAP-------- 119 (207)
T ss_pred -h---h-hHhhcEEecCCCcCCCCCcHHHHHHHHH-----------HhcC---C--cHHHHHHHHHHcCCHH--------
Confidence 1 1 233456766554433322 455443321 1100 1 1245788999999976
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 120 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 120 ---------LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL 190 (207)
T ss_pred ---------HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 45788999999999999999999 999999984 899999999 345
Q ss_pred hccccEEE
Q 019066 282 LSLTDRAR 289 (346)
Q Consensus 282 ~~~aDri~ 289 (346)
.. |+++
T Consensus 191 ~~--~~~~ 196 (207)
T PRK13539 191 PG--AREL 196 (207)
T ss_pred cc--CcEE
Confidence 44 8884
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.1e-33 Score=255.38 Aligned_cols=188 Identities=16% Similarity=0.178 Sum_probs=134.4
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
.+.|+.+.|+.... + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++......
T Consensus 2 ~~~~~~~~~~~~~~--i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~ 71 (218)
T cd03290 2 QVTNGYFSWGSGLA--T---LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNESEPSFE 71 (218)
T ss_pred eeeeeEEecCCCCc--c---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCccccccccc
Confidence 57899999975543 4 777999999999999999999999999999999999 9999999999876411100
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
......++.++|++|++..+ ..++.+|+.+... .. .+++.++++.+++.+.+...|.|+++
T Consensus 72 ~~~~~~~~~i~~~~q~~~~~-----------~~t~~~nl~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~ 132 (218)
T cd03290 72 ATRSRNRYSVAYAAQKPWLL-----------NATVEENITFGSP----FN----KQRYKAVTDACSLQPDIDLLPFGDQT 132 (218)
T ss_pred ccchhhcceEEEEcCCCccc-----------cccHHHHHhhcCc----CC----HHHHHHHHHHhCcHHHHHhCcCcccc
Confidence 00011133456666654332 2345566554321 01 12334566777776554444555554
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC------------------CceEEEEec--hhhh
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tviiiTH--~~~~ 282 (346)
.+ ++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 133 ~~------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~- 205 (218)
T cd03290 133 EI------GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL- 205 (218)
T ss_pred Cc------ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-
Confidence 44 345789999999999999999 999999874 689999999 455
Q ss_pred ccccEEEEEecCCe
Q 019066 283 SLTDRARIRTYLGE 296 (346)
Q Consensus 283 ~~aDri~v~l~~G~ 296 (346)
..||++++ |++|.
T Consensus 206 ~~~d~i~~-l~~G~ 218 (218)
T cd03290 206 PHADWIIA-MKDGS 218 (218)
T ss_pred hhCCEEEE-ecCCC
Confidence 46999964 88873
No 299
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=284.24 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=145.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|. . + |++|||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 248 ~~~i~~~~l~~~~~--~---~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 314 (491)
T PRK10982 248 EVILEVRNLTSLRQ--P---S---IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKKINN 314 (491)
T ss_pred CcEEEEeCcccccC--c---c---cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEECCC
Confidence 45899999999752 2 3 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. .....++.++|++|+.... + ++++......++.+++...............++++.++++.+++...
T Consensus 315 ~~---~~~~~~~~i~~~~q~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------ 383 (491)
T PRK10982 315 HN---ANEAINHGFALVTEERRST-G-IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP------ 383 (491)
T ss_pred CC---HHHHHHCCCEEcCCchhhC-C-cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC------
Confidence 11 1111234567888774311 0 11222111112223332111100101123445678889999999531
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 384 ----------~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~ 453 (491)
T PRK10982 384 ----------GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE 453 (491)
T ss_pred ----------CcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 25889999999999999999999 999999984 899999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
+..+|||++ +|++|+++..++.
T Consensus 454 ~~~~~d~v~-~l~~g~i~~~~~~ 475 (491)
T PRK10982 454 LLGITDRIL-VMSNGLVAGIVDT 475 (491)
T ss_pred HHhhCCEEE-EEECCEEEEEEcc
Confidence 889999996 4999999976654
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.9e-33 Score=313.56 Aligned_cols=197 Identities=10% Similarity=0.070 Sum_probs=160.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+|.|+++.. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~-~a---L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~~ 2005 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSS-PA---VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSILT 2005 (2272)
T ss_pred CceEEEEEEEEEECCCCc-eE---EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECcc
Confidence 457999999999975321 25 666999999999999999999999999999999999 999999999999741
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.....++.++|++|+...+..+ +.|++.++.. .. ..+.+..++++.++++.++|.+
T Consensus 2006 -----~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~-----------l~-g~~~~~~~~~v~~lLe~lgL~~------ 2062 (2272)
T TIGR01257 2006 -----NISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR-----------LR-GVPAEEIEKVANWSIQSLGLSL------ 2062 (2272)
T ss_pred -----hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH-----------hc-CCCHHHHHHHHHHHHHHcCCHH------
Confidence 1111245678888887666554 6666554321 11 1223445667889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||+|| ||||+|||+ |+|||++|| +
T Consensus 2063 -----------~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2063 -----------YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56899999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCcccccc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
++..+|||+++ |++|+++..|+++++..
T Consensus 2132 e~e~lcDrV~I-L~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2132 ECEALCTRLAI-MVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHHH
Confidence 78999999975 99999999999988744
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-33 Score=284.96 Aligned_cols=195 Identities=12% Similarity=0.109 Sum_probs=147.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ml~i~~ls~~~~~~~---i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~----- 64 (530)
T PRK15064 1 MLSTANITMQFGAKP---L---FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPNE----- 64 (530)
T ss_pred CEEEEEEEEEeCCcE---e---EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCC-----
Confidence 589999999997532 4 677999999999999999999999999999999999 999999998631
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHH------hhhhcchh---------------hccCCChHHHHH
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM------EGVRHGEL---------------VIRRSDSSSLRN 207 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~------~~i~~~~~---------------~~~~~~~~~~~~ 207 (346)
.++|++|+...+..+ +.+++.+...... +.+. ... ..........++
T Consensus 65 ----------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (530)
T PRK15064 65 ----------RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIY-ALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133 (530)
T ss_pred ----------EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHh-cccccccchHHHHHHHHHHHHhcCchhHHH
Confidence 246888877665554 6777654221000 0000 000 000000112346
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 269 (346)
++.++++.+|+.+. ..++++.+||||||||++||||| ||||++||.
T Consensus 134 ~~~~~l~~~gl~~~----------------~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 197 (530)
T PRK15064 134 RAGELLLGVGIPEE----------------QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV 197 (530)
T ss_pred HHHHHHHhCCCChh----------------HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH
Confidence 78899999999752 13567899999999999999999 999999984
Q ss_pred ----CceEEEEec--hhhhccccEEEEEecCCeE-eecCCcccccc
Q 019066 270 ----DKPVVVVTH--GDLLSLTDRARIRTYLGEL-LGIPPAKQIFD 308 (346)
Q Consensus 270 ----g~tviiiTH--~~~~~~aDri~v~l~~G~i-v~~g~~~~l~~ 308 (346)
+.|||+||| +.+..+||+++ +|++|++ +..|++++++.
T Consensus 198 l~~~~~tiiivsHd~~~~~~~~d~i~-~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 198 LNERNSTMIIISHDRHFLNSVCTHMA-DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HHhCCCeEEEEeCCHHHHHhhcceEE-EEeCCEEEEecCCHHHHHH
Confidence 889999999 56889999996 5999999 47898887764
No 302
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.2e-33 Score=247.83 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=116.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~~~-~~---l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 69 (178)
T cd03247 1 LSINNVSFSYPEQEQ-QV---LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPVSDL-- 69 (178)
T ss_pred CEEEEEEEEeCCCCc-cc---eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEHHHH--
Confidence 578999999976421 13 777999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. ...++.++|++|+ +.++..++.+|+
T Consensus 70 ~---~~~~~~i~~~~q~-----------~~~~~~tv~~~i---------------------------------------- 95 (178)
T cd03247 70 E---KALSSLISVLNQR-----------PYLFDTTLRNNL---------------------------------------- 95 (178)
T ss_pred H---HHHHhhEEEEccC-----------CeeecccHHHhh----------------------------------------
Confidence 0 0012234455444 322222332222
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+|||||+||++||||| ||||++||. +.|+|++|| +.+. .
T Consensus 96 ------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~ 162 (178)
T cd03247 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-H 162 (178)
T ss_pred ------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-h
Confidence 338999999999999999 999999983 789999999 4554 6
Q ss_pred ccEEEEEecCCeEeecC
Q 019066 285 TDRARIRTYLGELLGIP 301 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g 301 (346)
||++++ |++|++++.|
T Consensus 163 ~d~~~~-l~~g~i~~~~ 178 (178)
T cd03247 163 MDKILF-LENGKIIMQG 178 (178)
T ss_pred CCEEEE-EECCEEEecC
Confidence 999965 9999998764
No 303
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-33 Score=250.49 Aligned_cols=169 Identities=12% Similarity=0.137 Sum_probs=129.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 1 ml~~~~l~~~~~~~~---i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~-- 67 (200)
T PRK13540 1 MLDVIELDFDYHDQP---L---LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIKK-- 67 (200)
T ss_pred CEEEEEEEEEeCCee---E---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCcccc--
Confidence 489999999997633 4 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+..+ +.+|+ .++... . . .+.++.++++.+++..
T Consensus 68 ---~~~~~~~~i~~~~q~~~~~~~~tv~~~~-----------~~~~~~--~--~--~~~~~~~~l~~~~l~~-------- 119 (200)
T PRK13540 68 ---DLCTYQKQLCFVGHRSGINPYLTLRENC-----------LYDIHF--S--P--GAVGITELCRLFSLEH-------- 119 (200)
T ss_pred ---CHHHHHhheEEeccccccCcCCCHHHHH-----------HHHHhc--C--c--chHHHHHHHHHcCCch--------
Confidence 0011134566777665443332 44443 332110 0 1 1246788999999976
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~ 282 (346)
..++++.+||+||+||++||||| ||||++||. +.|+|++|| ....
T Consensus 120 ---------~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 120 ---------LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred ---------hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence 35778899999999999999999 999999984 789999999 4444
Q ss_pred ccccEE
Q 019066 283 SLTDRA 288 (346)
Q Consensus 283 ~~aDri 288 (346)
..||.-
T Consensus 191 ~~~d~~ 196 (200)
T PRK13540 191 NKADYE 196 (200)
T ss_pred cccchh
Confidence 558876
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-33 Score=284.98 Aligned_cols=181 Identities=12% Similarity=0.126 Sum_probs=142.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 318 ~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~~---- 382 (530)
T PRK15064 318 NALEVENLTKGFDNGP---L---FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSENA---- 382 (530)
T ss_pred ceEEEEeeEEeeCCce---e---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCce----
Confidence 4899999999997643 3 677999999999999999999999999999999999 999999998732
Q ss_pred ccccccccCCCCccceeeccc-ccc-cc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTR-SLS-DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~-~~~-~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.++|++|+.. .+. .+ +.+++.++ . . ....++++.++++.+++...
T Consensus 383 -----------~i~~~~q~~~~~~~~~~t~~~~~~~~-----------~----~--~~~~~~~~~~~l~~~~l~~~---- 430 (530)
T PRK15064 383 -----------NIGYYAQDHAYDFENDLTLFDWMSQW-----------R----Q--EGDDEQAVRGTLGRLLFSQD---- 430 (530)
T ss_pred -----------EEEEEcccccccCCCCCcHHHHHHHh-----------c----c--CCccHHHHHHHHHHcCCChh----
Confidence 3467888753 121 12 33332210 0 0 01124567889999999531
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhh
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 281 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+
T Consensus 431 ------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 431 ------------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred ------------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 35889999999999999999999 999999985 569999999 578
Q ss_pred hccccEEEEEecCCeEe-ecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELL-GIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv-~~g~~~~l~~~ 309 (346)
..+|||+++ |++|+++ ..|+++++++.
T Consensus 499 ~~~~d~i~~-l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 499 SSLATRIIE-ITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHhCCEEEE-EECCeEEEcCCCHHHHHHH
Confidence 889999965 9999998 77888776543
No 305
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.8e-33 Score=268.77 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=138.2
Q ss_pred EEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHH
Q 019066 107 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWI 186 (346)
Q Consensus 107 IvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v 186 (346)
|+||||||||||+++|+|+++ |++|+|.++|+++.. ....++.++|++|+...+..+ ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~~------~~~~~~~i~~v~q~~~l~~~~----------tv 59 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVTN------VPPHLRHINMVFQSYALFPHM----------TV 59 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC------CCHHHCCEEEEecCccccCCC----------cH
Confidence 689999999999999999999 999999999998751 111234567777776555443 34
Q ss_pred HhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------
Q 019066 187 MEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------ 260 (346)
Q Consensus 187 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------ 260 (346)
.+|+.++.... .......++++.++++.+++.+ ..++++.+||||||||++|||||
T Consensus 60 ~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgGq~qRvalaraL~~~p~l 121 (325)
T TIGR01187 60 EENVAFGLKMR-KVPRAEIKPRVLEALRLVQLEE-----------------FADRKPHQLSGGQQQRVALARALVFKPKI 121 (325)
T ss_pred HHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCcc-----------------hhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 44444432211 1123445677889999999987 56889999999999999999999
Q ss_pred ---CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 261 ---NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 261 ---DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
||||++||. |.|+|+||| +++..+|||+++ |++|++++.|++++++..|...++..+
T Consensus 122 llLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~v-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 200 (325)
T TIGR01187 122 LLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI-MRKGKIAQIGTPEEIYEEPANLFVARF 200 (325)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHh
Confidence 999999984 789999999 578889999975 999999999999999998887776666
Q ss_pred HHH
Q 019066 319 LII 321 (346)
Q Consensus 319 ~~~ 321 (346)
+..
T Consensus 201 ~~~ 203 (325)
T TIGR01187 201 IGE 203 (325)
T ss_pred cCc
Confidence 653
No 306
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=246.26 Aligned_cols=204 Identities=15% Similarity=0.192 Sum_probs=173.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc-eeCCC
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g-~~i~~ 147 (346)
.+|+++||+++|++- .| |+++||+|.+||.-+||||||+||||++-+|.|--+ |+.|+|+|+| .++.
T Consensus 4 ~iL~~~~vsVsF~GF---~A---ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~- 71 (249)
T COG4674 4 IILYLDGVSVSFGGF---KA---LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLT- 71 (249)
T ss_pred ceEEEeceEEEEcce---ee---eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhc-
Confidence 469999999999874 36 666999999999999999999999999999999999 9999999999 7776
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHH---HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKL---WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~---~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
...++.+.|..++..||.+.-|..+ |+||+.+... .++..+.. ....+.+.++.++|...||.+
T Consensus 72 --~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~-------r~~~~e~~ride~La~igL~~--- 139 (249)
T COG4674 72 --KLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFA-------RLRAEERRRIDELLATIGLGD--- 139 (249)
T ss_pred --cCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhh-------hcChhHHHHHHHHHHHcccch---
Confidence 3446677788999999999999888 9999887553 33332221 113455678999999999998
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC---------------CCceEEEEec-
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---------------DDKPVVVVTH- 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld---------------~g~tviiiTH- 278 (346)
..++....||.||||++.|++.+ |||++|+. .+.+|++|.|
T Consensus 140 --------------~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHD 205 (249)
T COG4674 140 --------------ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHD 205 (249)
T ss_pred --------------hhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 45888999999999999999998 99999964 3789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
.++..+|++|.| |+.|.+...|+.+++-.+|.
T Consensus 206 M~Fvr~~A~~VTV-lh~G~VL~EGsld~v~~dp~ 238 (249)
T COG4674 206 MGFVREIADKVTV-LHEGSVLAEGSLDEVQNDPK 238 (249)
T ss_pred HHHHHHhhheeEE-EeccceeecccHHHhhcCcc
Confidence 589999999986 99999999999999877764
No 307
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-32 Score=256.41 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=139.8
Q ss_pred cEEEeeeEEEeCCC-----------------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCC
Q 019066 70 LTDAKNKILSYTPG-----------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 132 (346)
Q Consensus 70 ~l~~~~l~~~y~~~-----------------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~ 132 (346)
-|+++||++.|... ....+ |+++||+|++||+++|+||||||||||+++|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~----- 75 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFA---LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS----- 75 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----
Confidence 48899999988531 11225 666999999999999999999999999999999999
Q ss_pred CCCceEEECceeCCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHH
Q 019066 133 SERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 211 (346)
Q Consensus 133 p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 211 (346)
|++|+|.++|... +..+.......+ +.+|+. +..... ........+.+.+
T Consensus 76 p~~G~I~~~g~~~-----------------~~~~~~~~~~~~tv~enl~-----------~~~~~~-~~~~~~~~~~~~~ 126 (264)
T PRK13546 76 PTVGKVDRNGEVS-----------------VIAISAGLSGQLTGIENIE-----------FKMLCM-GFKRKEIKAMTPK 126 (264)
T ss_pred CCceEEEECCEEe-----------------EEecccCCCCCCcHHHHHH-----------HHHHHc-CCCHHHHHHHHHH
Confidence 9999999998521 112221111111 344433 211111 1123344556778
Q ss_pred HHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------
Q 019066 212 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 269 (346)
Q Consensus 212 ~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------- 269 (346)
+++.+++.+ ..++++.+|||||+||++||||| ||||++||.
T Consensus 127 ~l~~~~l~~-----------------~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 127 IIEFSELGE-----------------FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred HHHHcCCch-----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 888889877 45888999999999999999999 999999984
Q ss_pred ---CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ---g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|.|+|++|| +.+..+||++++ |++|++++.|+.++++..
T Consensus 190 ~~~g~tiIiisH~~~~i~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 190 KEQNKTIFFVSHNLGQVRQFCTKIAW-IEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHCCCEEEEEcCCHHHHHHHcCEEEE-EECCEEEEeCCHHHHHHH
Confidence 789999999 567889999964 999999999998887654
No 308
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.2e-33 Score=249.08 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=119.3
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++|++++|++. . + |+++||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~-~--~---l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----p~~G~i~~~g~~~~~~ 69 (200)
T cd03217 1 LEIKDLHVSVGGK-E--I---LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-----VTEGEILFKGEDITDL 69 (200)
T ss_pred CeEEEEEEEeCCE-E--e---eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----CCccEEEECCEECCcC
Confidence 5789999999753 2 4 7779999999999999999999999999999999 47 8999999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .....+..++|++|+...+.++ ++. +.+
T Consensus 70 ~---~~~~~~~~i~~v~q~~~~~~~~----------~~~-----------------------~~l--------------- 98 (200)
T cd03217 70 P---PEERARLGIFLAFQYPPEIPGV----------KNA-----------------------DFL--------------- 98 (200)
T ss_pred C---HHHHhhCcEEEeecChhhccCc----------cHH-----------------------HHH---------------
Confidence 0 0011122345555543222111 110 001
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
+..+.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 99 -----------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~ 167 (200)
T cd03217 99 -----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLL 167 (200)
T ss_pred -----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 112358999999999999999 999999983 789999999 556
Q ss_pred hc-cccEEEEEecCCeEeecCCc
Q 019066 282 LS-LTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 282 ~~-~aDri~v~l~~G~iv~~g~~ 303 (346)
.. +||++++ |++|++++.|+.
T Consensus 168 ~~~~~d~i~~-l~~G~i~~~~~~ 189 (200)
T cd03217 168 DYIKPDRVHV-LYDGRIVKSGDK 189 (200)
T ss_pred HHhhCCEEEE-EECCEEEEEccH
Confidence 66 7999975 999999999844
No 309
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-33 Score=282.07 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=145.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+.++++|+++. . + ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 256 ~~l~~~~~~~~----~---~---l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 256 VRLRLDGLKGP----G---L---REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPIDIR 320 (501)
T ss_pred cEEEEeccccC----C---c---ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEECCCC
Confidence 46899999842 1 3 677999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCCccceeeccc---ccccchhhchHhhHHHHHhhhhcchhhc----c-CCChHHHHHHHHHHHHHcCCCc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTR---SLSDDASDNINMIKLWIMEGVRHGELVI----R-RSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~---~~~~~v~qn~~~~~~~v~~~i~~~~~~~----~-~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
. .....++.++|++|++. .+..+ ++.+|+.++.... . .......++++.++++.+++..
T Consensus 321 ~---~~~~~~~~i~~~~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 387 (501)
T PRK11288 321 S---PRDAIRAGIMLCPEDRKAEGIIPVH----------SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT 387 (501)
T ss_pred C---HHHHHhCCCEEcCcCHhhCCCcCCC----------CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc
Confidence 0 11112345677777653 23222 3334443321100 0 0012233467889999999942
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
. ..++++.+||||||||++||||| ||||++||. |.|||+
T Consensus 388 ~----------------~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 451 (501)
T PRK11288 388 P----------------SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF 451 (501)
T ss_pred C----------------CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 1 35889999999999999999999 999999984 889999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
||| +.+..+||++++ |++|++++.|+++++
T Consensus 452 vsHd~~~~~~~~d~i~~-l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 452 VSSDLPEVLGVADRIVV-MREGRIAGELAREQA 483 (501)
T ss_pred ECCCHHHHHhhCCEEEE-EECCEEEEEEccccC
Confidence 999 578899999965 999999999987654
No 310
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=8.6e-33 Score=281.31 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=145.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++ . + |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 266 ~~~l~~~~l~~-----~---~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 329 (510)
T PRK15439 266 APVLTVEDLTG-----E---G---FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINA 329 (510)
T ss_pred CceEEEeCCCC-----C---C---ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECCC
Confidence 45899999994 1 2 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeeccc---ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC-ccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSV 222 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~---~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~ 222 (346)
.. .....++.++|++|+.. .+..+ +.+|+..+.. ..... .......++++.++++.+++. .
T Consensus 330 ~~---~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~--------~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-- 395 (510)
T PRK15439 330 LS---TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTH--------NRRGF-WIKPARENAVLERYRRALNIKFN-- 395 (510)
T ss_pred CC---HHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhh--------hhhcc-ccChHHHHHHHHHHHHHcCCCCC--
Confidence 10 11112345678877642 23222 3343321100 00000 001223346688999999997 4
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEe
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. |.|||+||
T Consensus 396 ---------------~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivs 460 (510)
T PRK15439 396 ---------------HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460 (510)
T ss_pred ---------------CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35889999999999999999999 999999984 78999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
| +.+.++|||+++ |++|+++..|+++++.
T Consensus 461 Hd~~~i~~~~d~i~~-l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 461 SDLEEIEQMADRVLV-MHQGEISGALTGAAIN 491 (510)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEEEccccCC
Confidence 9 578899999965 9999999998876554
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-32 Score=282.61 Aligned_cols=197 Identities=12% Similarity=0.073 Sum_probs=147.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|+++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~~~~--i---l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~~---- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ--I---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPG---- 69 (556)
T ss_pred cEEEEEeeEEEEeCCCCe--e---eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC----
Confidence 458999999999973232 4 777999999999999999999999999999999999 99999998641
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHH------hhhhc--chh----------------hccCCCh
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM------EGVRH--GEL----------------VIRRSDS 202 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~------~~i~~--~~~----------------~~~~~~~ 202 (346)
..++|++|++..+..+ +.+|+.+....+. ..+.. ... .......
T Consensus 70 -----------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 70 -----------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred -----------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 1357889987766554 7777654321100 00000 000 0000000
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
.+.++++.++++.+|+.. .++++.+||||||||++||||| ||||++||.
T Consensus 139 ~~~~~~~~~~l~~~gl~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~ 200 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPP------------------WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 200 (556)
T ss_pred cchHHHHHHHHHhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHH
Confidence 122457888999999954 3778999999999999999999 999999995
Q ss_pred ---------CceEEEEec--hhhhccccEEEEEecCCeEe-ecCCcccccc
Q 019066 270 ---------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 308 (346)
Q Consensus 270 ---------g~tviiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l~~ 308 (346)
+.|||+||| +.+..+||+|++ |++|+++ ..|+.+++..
T Consensus 201 ~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~-l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILE-LDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEE-EeCCEEEEecCCHHHHHH
Confidence 569999999 578889999964 9999987 7788776544
No 312
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-33 Score=244.50 Aligned_cols=146 Identities=15% Similarity=0.192 Sum_probs=113.6
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 68 (173)
T cd03230 1 IEVRNLSKRYGKKT---A---LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIKKEP- 68 (173)
T ss_pred CEEEEEEEEECCee---e---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcccch-
Confidence 57899999997532 4 777999999999999999999999999999999999 99999999998875110
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
...++.++|++|+...+.++ ++.+|+
T Consensus 69 ----~~~~~~i~~~~q~~~~~~~~----------tv~~~~---------------------------------------- 94 (173)
T cd03230 69 ----EEVKRRIGYLPEEPSLYENL----------TVRENL---------------------------------------- 94 (173)
T ss_pred ----HhhhccEEEEecCCccccCC----------cHHHHh----------------------------------------
Confidence 11123455666653322110 221111
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
.|||||+||++||||| ||||++||. |.|+|++|| +.+..
T Consensus 95 --------------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 95 --------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred --------------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 0999999999999999 999999984 689999999 46777
Q ss_pred cccEEEEEecCCeE
Q 019066 284 LTDRARIRTYLGEL 297 (346)
Q Consensus 284 ~aDri~v~l~~G~i 297 (346)
+||++++ |++|++
T Consensus 161 ~~d~i~~-l~~g~i 173 (173)
T cd03230 161 LCDRVAI-LNNGRI 173 (173)
T ss_pred hCCEEEE-EeCCCC
Confidence 9999975 998864
No 313
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.6e-33 Score=244.20 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=111.3
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~~~~-~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 70 (173)
T cd03246 1 LEVENVSFRYPGAEP-PV---LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADISQWD- 70 (173)
T ss_pred CEEEEEEEEcCCCCC-cc---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcccCC-
Confidence 578999999975321 14 777999999999999999999999999999999999 99999999998874100
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. ...++.++|++|+ +.+++.++.+|+
T Consensus 71 --~-~~~~~~i~~~~q~-----------~~~~~~tv~~~l---------------------------------------- 96 (173)
T cd03246 71 --P-NELGDHVGYLPQD-----------DELFSGSIAENI---------------------------------------- 96 (173)
T ss_pred --H-HHHHhheEEECCC-----------CccccCcHHHHC----------------------------------------
Confidence 0 0012234444444 322221221111
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
|||||+||++||||| ||||++||. |+|+|++|| +.+ .
T Consensus 97 ---------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~ 160 (173)
T cd03246 97 ---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-A 160 (173)
T ss_pred ---------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-H
Confidence 999999999999999 999999984 789999999 445 5
Q ss_pred cccEEEEEecCCeE
Q 019066 284 LTDRARIRTYLGEL 297 (346)
Q Consensus 284 ~aDri~v~l~~G~i 297 (346)
.||++++ |++|++
T Consensus 161 ~~d~v~~-l~~G~i 173 (173)
T cd03246 161 SADRILV-LEDGRV 173 (173)
T ss_pred hCCEEEE-EECCCC
Confidence 7999965 999874
No 314
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.9e-32 Score=245.25 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=121.0
Q ss_pred cEEEeeeEEEeCCC-----CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc--cCCCCCCCCceEEECc
Q 019066 70 LTDAKNKILSYTPG-----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNS 142 (346)
Q Consensus 70 ~l~~~~l~~~y~~~-----~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~--~~~~~~p~~G~I~~~g 142 (346)
.|+++||+++|++. .. + |+++||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~--~---l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g 72 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQ--L---LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLING 72 (194)
T ss_pred EEEEEeeEEEEecCCCccccc--c---eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECC
Confidence 48999999999752 22 4 67799999999999999999999999999999999 8 9999999999
Q ss_pred eeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccc
Q 019066 143 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 143 ~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
+++.. . ..++.++|++|+...+..+ ++.+|+.++. .
T Consensus 73 ~~~~~------~-~~~~~i~~~~q~~~~~~~~----------t~~~~i~~~~-------------------------~-- 108 (194)
T cd03213 73 RPLDK------R-SFRKIIGYVPQDDILHPTL----------TVRETLMFAA-------------------------K-- 108 (194)
T ss_pred EeCch------H-hhhheEEEccCcccCCCCC----------cHHHHHHHHH-------------------------H--
Confidence 98751 1 1133456666654333221 3333332100 0
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEe
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiT 277 (346)
..+|||||+||++||||| ||||++||. ++|+|++|
T Consensus 109 --------------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 168 (194)
T cd03213 109 --------------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSI 168 (194)
T ss_pred --------------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 007999999999999999 999999984 78999999
Q ss_pred c--h-hhhccccEEEEEecCCeEeecC
Q 019066 278 H--G-DLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 278 H--~-~~~~~aDri~v~l~~G~iv~~g 301 (346)
| . .+..+||++++ |++|+++..|
T Consensus 169 h~~~~~~~~~~d~v~~-l~~G~i~~~~ 194 (194)
T cd03213 169 HQPSSEIFELFDKLLL-LSQGRVIYFG 194 (194)
T ss_pred cCchHHHHHhcCEEEE-EeCCEEEecC
Confidence 9 3 46788999975 9999998754
No 315
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1e-32 Score=310.02 Aligned_cols=208 Identities=13% Similarity=0.109 Sum_probs=162.4
Q ss_pred hhhHHHHHHhhhhhhhhc-----c----CCCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHH
Q 019066 48 RRDAVFREVLQSYDQLRT-----R----IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 117 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~-----~----~~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKST 117 (346)
.+..|+.++++.+++... . ....|+++|++|.|++. .. + |+|+||+|++|++++|+|||||||||
T Consensus 605 ~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~---l~~isl~i~~G~~v~IvG~~GsGKST 679 (1522)
T TIGR00957 605 VSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPP--T---LNGITFSIPEGALVAVVGQVGCGKSS 679 (1522)
T ss_pred HHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCc--e---eeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 345567777765433211 0 11269999999999753 23 3 77799999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc
Q 019066 118 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 197 (346)
Q Consensus 118 Ll~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~ 197 (346)
|+++|+|+++ |++|+|.++|. ++|++|++..+ ..++++||.++...
T Consensus 680 Ll~~l~g~~~-----~~~G~i~~~g~-----------------i~yv~Q~~~l~-----------~~Ti~eNI~~g~~~- 725 (1522)
T TIGR00957 680 LLSALLAEMD-----KVEGHVHMKGS-----------------VAYVPQQAWIQ-----------NDSLRENILFGKAL- 725 (1522)
T ss_pred HHHHHhCCCc-----cCCcEEEECCE-----------------EEEEcCCcccc-----------CCcHHHHhhcCCcc-
Confidence 9999999999 99999999862 25666665443 34566666654320
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC
Q 019066 198 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 268 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 268 (346)
.+++..++++.+++.+++..+|+|++|.||+++ .+||||||||++||||+ |||||+||
T Consensus 726 -------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g------~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD 792 (1522)
T TIGR00957 726 -------NEKYYQQVLEACALLPDLEILPSGDRTEIGEKG------VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792 (1522)
T ss_pred -------CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC------CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 123455677788888888899999999999994 49999999999999999 99999988
Q ss_pred C------------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 269 D------------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 269 ~------------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
. ++|+|+||| ......||+|+ +|++|++++.|+++++..
T Consensus 793 ~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii-~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII-VMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE-EecCCeEEeeCCHHHHHh
Confidence 4 579999999 33334599996 599999999999988865
No 316
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.7e-32 Score=242.97 Aligned_cols=153 Identities=14% Similarity=0.200 Sum_probs=116.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++| + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~-----~-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 66 (182)
T cd03215 2 EPVLEVRGLSVKG-----A-----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTR 66 (182)
T ss_pred CcEEEEeccEEEe-----e-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCc
Confidence 3579999999999 2 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.. .....++.++|++|+... ..+++ .++.+|+.+. .
T Consensus 67 ~~---~~~~~~~~i~~~~q~~~~--------~~~~~~~t~~e~l~~~--------------------------~------ 103 (182)
T cd03215 67 RS---PRDAIRAGIAYVPEDRKR--------EGLVLDLSVAENIALS--------------------------S------ 103 (182)
T ss_pred cC---HHHHHhCCeEEecCCccc--------CcccCCCcHHHHHHHH--------------------------h------
Confidence 10 001123345666665310 01111 1333332210 0
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
.||+|||||++||||| ||||++||. +.|+|++|| +
T Consensus 104 ------------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 104 ------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred ------------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 1999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeE
Q 019066 280 DLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~i 297 (346)
.+.++||++++ |++|++
T Consensus 166 ~~~~~~d~v~~-l~~G~i 182 (182)
T cd03215 166 ELLGLCDRILV-MYEGRI 182 (182)
T ss_pred HHHHhCCEEEE-ecCCcC
Confidence 78899999965 999874
No 317
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-32 Score=247.13 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=124.1
Q ss_pred cEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+.++||+|.|+.+ ....+ |+++||+|++||+++|+||||||||||+++|+|++++.. |++|+|.++|.++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--~~~G~i~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPI---LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV--SVEGDIHYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccCCCCcee---eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCC--CcceEEEECCEECccc
Confidence 47899999999753 11225 677999999999999999999999999999999987211 4799999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+..+ ++.+|+.+... . .
T Consensus 78 -----~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~---------~--------~-------------- 111 (202)
T cd03233 78 -----AEKYPGEIIYVSEEDVHFPTL----------TVRETLDFALR---------C--------K-------------- 111 (202)
T ss_pred -----hhhhcceEEEEecccccCCCC----------cHHHHHhhhhh---------h--------c--------------
Confidence 011233566777664443322 44444432110 0 0
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec---h
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---G 279 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH---~ 279 (346)
.++++..||+||+||++||||| ||||++||. +.|+|+++| +
T Consensus 112 ----------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~ 181 (202)
T cd03233 112 ----------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASD 181 (202)
T ss_pred ----------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHH
Confidence 1445779999999999999999 999999984 456666655 3
Q ss_pred hhhccccEEEEEecCCeEeecC
Q 019066 280 DLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g 301 (346)
.+.++||++++ |++|+++..|
T Consensus 182 ~~~~~~d~i~~-l~~G~i~~~g 202 (202)
T cd03233 182 EIYDLFDKVLV-LYEGRQIYYG 202 (202)
T ss_pred HHHHhCCeEEE-EECCEEEecC
Confidence 67889999965 9999998764
No 318
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-32 Score=277.44 Aligned_cols=196 Identities=13% Similarity=0.102 Sum_probs=139.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~g~~i~ 146 (346)
.++|+++|+++.|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+.+ + ++|+|.++|+++.
T Consensus 258 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~~ 326 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP---I---LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRRG 326 (490)
T ss_pred CceEEEeceEEEECCee---E---EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccCC
Confidence 56899999999997533 3 777999999999999999999999999999999876 5 6999999998753
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
... .....++.++|++|+...+... ..++.+++.++... .........++++.++++.+++.+.
T Consensus 327 ~~~---~~~~~~~~i~~v~q~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-- 393 (490)
T PRK10938 327 SGE---TIWDIKKHIGYVSSSLHLDYRV--------STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR-- 393 (490)
T ss_pred CCC---CHHHHHhhceEECHHHHhhccc--------CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh--
Confidence 100 0001133566766654322110 00122222111100 0000112335678899999999752
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C-ceEEEEe
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVT 277 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g-~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. + .|||+||
T Consensus 394 --------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivs 459 (490)
T PRK10938 394 --------------TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS 459 (490)
T ss_pred --------------hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 24788999999999999999999 999999984 4 4699999
Q ss_pred c--hhhhc-cccEEEEEecCCeEeecCC
Q 019066 278 H--GDLLS-LTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 278 H--~~~~~-~aDri~v~l~~G~iv~~g~ 302 (346)
| +.+.. +||++++ |++|+|++.-.
T Consensus 460 Hd~~~~~~~~~d~v~~-l~~G~i~~~~~ 486 (490)
T PRK10938 460 HHAEDAPACITHRLEF-VPDGDIYRYVQ 486 (490)
T ss_pred cchhhhhhhhheeEEE-ecCCceEEeec
Confidence 9 46766 5999964 99999987654
No 319
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-32 Score=243.54 Aligned_cols=150 Identities=21% Similarity=0.249 Sum_probs=112.6
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~~~---~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (178)
T cd03229 1 LELKNVSKRYGQKT---V---LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTDL-- 67 (178)
T ss_pred CEEEEEEEEECCeE---E---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccc--
Confidence 57899999997532 4 777999999999999999999999999999999999 9999999999887511
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.+.....++.++|++|+...+.+ .++.+|+.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~----------~t~~~~l~~-------------------------------------- 99 (178)
T cd03229 68 EDELPPLRRRIGMVFQDFALFPH----------LTVLENIAL-------------------------------------- 99 (178)
T ss_pred chhHHHHhhcEEEEecCCccCCC----------CCHHHheee--------------------------------------
Confidence 00001112345555554322211 122222110
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
.|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 100 --------------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 100 --------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred --------------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1999999999999999 999999983 589999999 4677
Q ss_pred ccccEEEEEecCCe
Q 019066 283 SLTDRARIRTYLGE 296 (346)
Q Consensus 283 ~~aDri~v~l~~G~ 296 (346)
.+||++++ |++|+
T Consensus 166 ~~~d~i~~-l~~g~ 178 (178)
T cd03229 166 RLADRVVV-LRDGK 178 (178)
T ss_pred HhcCEEEE-EeCCC
Confidence 78999965 98874
No 320
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.4e-32 Score=251.15 Aligned_cols=171 Identities=16% Similarity=0.230 Sum_probs=131.4
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchh
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 176 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~ 176 (346)
|+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. . .++.++|++|+...+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~------~---~~~~i~~v~q~~~~~~~--- 63 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASPG------K---GWRHIGYVPQRHEFAWD--- 63 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccch------H---hhCcEEEecccccccCC---
Confidence 5789999999999999999999999999999 99999999998753 1 13456788877543211
Q ss_pred hchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHH
Q 019066 177 DNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 253 (346)
Q Consensus 177 qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQR 253 (346)
+..++.+|+.++.... ........++++.++++.+++.+ ..++++.+||||||||
T Consensus 64 -----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~~qr 121 (223)
T TIGR03771 64 -----FPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-----------------LADRPVGELSGGQRQR 121 (223)
T ss_pred -----CCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCch-----------------hhcCChhhCCHHHHHH
Confidence 0113334443321100 00112234567889999999987 4588899999999999
Q ss_pred HHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 254 QIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 254 v~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
++||||| ||||++||. +.|+|++|| +.+.++||++++ + +|+++..|+++++
T Consensus 122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~-l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVL-L-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE-E-CCEEEeecCHHHh
Confidence 9999999 999999984 789999999 568889999965 8 7999999998877
Q ss_pred cc
Q 019066 307 FD 308 (346)
Q Consensus 307 ~~ 308 (346)
..
T Consensus 200 ~~ 201 (223)
T TIGR03771 200 QD 201 (223)
T ss_pred cC
Confidence 55
No 321
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-32 Score=243.21 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=120.1
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.|+++|+++.|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|++... |++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~-- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQL---LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLD-- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEe---EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehH--
Confidence 589999999997521 0124 67799999999999999999999999999999986211 78999999998863
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
...++.++|++|+...+..+ ++.+|+.++..
T Consensus 75 ------~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~--------------------------------- 105 (192)
T cd03232 75 ------KNFQRSTGYVEQQDVHSPNL----------TVREALRFSAL--------------------------------- 105 (192)
T ss_pred ------HHhhhceEEecccCccccCC----------cHHHHHHHHHH---------------------------------
Confidence 11123456666654333221 33334331100
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h-h
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G-D 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~-~ 280 (346)
.+ +|||||+||++||||| ||||++||. +.|+|++|| + .
T Consensus 106 ----------~~----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~ 171 (192)
T cd03232 106 ----------LR----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSAS 171 (192)
T ss_pred ----------Hh----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHH
Confidence 00 7999999999999999 999999984 799999999 3 3
Q ss_pred hhccccEEEEEecC-CeEeecC
Q 019066 281 LLSLTDRARIRTYL-GELLGIP 301 (346)
Q Consensus 281 ~~~~aDri~v~l~~-G~iv~~g 301 (346)
+..+||++++ |++ |++++.|
T Consensus 172 ~~~~~d~i~~-l~~~g~i~~~g 192 (192)
T cd03232 172 IFEKFDRLLL-LKRGGKTVYFG 192 (192)
T ss_pred HHhhCCEEEE-EcCCCeEEeCC
Confidence 6788999965 998 9998865
No 322
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.98 E-value=3.2e-32 Score=237.39 Aligned_cols=135 Identities=15% Similarity=0.233 Sum_probs=108.7
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---v---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~--- 66 (163)
T cd03216 1 LELRGITKRFGGVK---A---LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSF--- 66 (163)
T ss_pred CEEEEEEEEECCeE---E---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCc---
Confidence 57999999997542 4 777999999999999999999999999999999999 999999999987640
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.... ... -..+++
T Consensus 67 ------------~~~~------------------------------------~~~-------~~~i~~------------ 79 (163)
T cd03216 67 ------------ASPR------------------------------------DAR-------RAGIAM------------ 79 (163)
T ss_pred ------------CCHH------------------------------------HHH-------hcCeEE------------
Confidence 0000 000 000110
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..+|||||+||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 80 ------------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 80 ------------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred ------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 112999999999999999 999999984 789999999 46788
Q ss_pred cccEEEEEecCCeEee
Q 019066 284 LTDRARIRTYLGELLG 299 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~ 299 (346)
+||++++ |++|++++
T Consensus 148 ~~d~~~~-l~~g~i~~ 162 (163)
T cd03216 148 IADRVTV-LRDGRVVG 162 (163)
T ss_pred hCCEEEE-EECCEEEe
Confidence 9999965 99999875
No 323
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.98 E-value=2e-32 Score=243.81 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=115.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ........++.++|++|++...
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLDY--SRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEccc--cccchHHHHhhEEEEecChhhc
Confidence 677999999999999999999999999999999999 999999999998741 0001111134567777765210
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
++..++.+|+.++.... ........+++.++++.+++.+ ..++++.+||||||
T Consensus 81 ---------~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~~ 133 (190)
T TIGR01166 81 ---------LFAADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASG-----------------LRERPTHCLSGGEK 133 (190)
T ss_pred ---------cccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchh-----------------hhhCChhhCCHHHH
Confidence 11123444444332111 1123344567889999999987 46888999999999
Q ss_pred HHHHHHHhc---------CccccCCCC----------------CceEEEEech
Q 019066 252 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 279 (346)
Q Consensus 252 QRv~IArAL---------DEPts~Ld~----------------g~tviiiTH~ 279 (346)
||++||||| ||||++||. |.|+|++||+
T Consensus 134 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 134 KRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 999999999 999999984 7899999994
No 324
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.98 E-value=8.9e-33 Score=288.73 Aligned_cols=180 Identities=14% Similarity=0.069 Sum_probs=138.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||++.|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 450 ~~i~~~nv~~~~~~~~~--i---l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~------ 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV--L---IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPA------ 513 (659)
T ss_pred CeEEEEeeEEECCCCCe--e---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecC------
Confidence 46999999999965433 4 777999999999999999999999999999999999 9999998753
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
++.+++++|++..+.+ ++.+|+.++............++++.++++.+++.+.+.+ |.|
T Consensus 514 ---------~~~i~~v~Q~~~l~~~-----------tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g 572 (659)
T TIGR00954 514 ---------KGKLFYVPQRPYMTLG-----------TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGG 572 (659)
T ss_pred ---------CCcEEEECCCCCCCCc-----------CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCC
Confidence 2245677777655543 4444544432111000011124567889999999886654 899
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec-hhhhccc
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLT 285 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH-~~~~~~a 285 (346)
|+|+++. +.+||||||||++||||| ||||++||. |.|+|+||| ....+.|
T Consensus 573 ~~~~~~~-------~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 573 WSAVQDW-------MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred ccccccc-------ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhC
Confidence 9998653 458999999999999999 999999984 899999999 3455779
Q ss_pred cEEEEEec
Q 019066 286 DRARIRTY 293 (346)
Q Consensus 286 Dri~v~l~ 293 (346)
|++++ |+
T Consensus 646 d~il~-l~ 652 (659)
T TIGR00954 646 EYLLY-MD 652 (659)
T ss_pred CEEEE-Ee
Confidence 99965 74
No 325
>PLN03211 ABC transporter G-25; Provisional
Probab=99.98 E-value=3e-32 Score=284.08 Aligned_cols=194 Identities=12% Similarity=0.115 Sum_probs=145.3
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC--CceEEECceeCCCccc
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--RAQVTYNSSVGDGTYF 150 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~--~G~I~~~g~~i~~~~~ 150 (346)
++|++++|+++. + |+||||++++||++||+||||||||||+++|+|+++ |+ +|+|.++|+++.
T Consensus 71 ~~~l~~~~~~~~---i---L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-----~~~~sG~I~inG~~~~---- 135 (659)
T PLN03211 71 ISDETRQIQERT---I---LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-----GNNFTGTILANNRKPT---- 135 (659)
T ss_pred cccccccCCCCe---e---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEEEECCEECc----
Confidence 445566665432 4 777999999999999999999999999999999998 64 899999999864
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. . .++.++|++|+...+..+ |.|++.+.... ........++.++++.++++.+||.+. .
T Consensus 136 --~-~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~---------~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~ 195 (659)
T PLN03211 136 --K-Q-ILKRTGFVTQDDILYPHLTVRETLVFCSLL---------RLPKSLTKQEKILVAESVISELGLTKC-------E 195 (659)
T ss_pred --h-h-hccceEEECcccccCCcCCHHHHHHHHHHh---------CCCCCCCHHHHHHHHHHHHHHcCChhh-------c
Confidence 1 1 123467887776655443 55555432110 000111234456778899999999762 2
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h-hh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G-DL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~-~~ 281 (346)
+|.|+ ++.+..||||||||++||||| ||||++||. |+|||++|| + .+
T Consensus 196 ~t~vg-----~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i 270 (659)
T PLN03211 196 NTIIG-----NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV 270 (659)
T ss_pred CceeC-----CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence 33343 345779999999999999999 999999984 899999999 3 47
Q ss_pred hccccEEEEEecCCeEeecCCccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
.++||++++ |++|+++..|+++++.
T Consensus 271 ~~~~D~iil-L~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 271 YQMFDSVLV-LSEGRCLFFGKGSDAM 295 (659)
T ss_pred HHhhceEEE-ecCCcEEEECCHHHHH
Confidence 889999965 9999999999988774
No 326
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=2.8e-32 Score=239.34 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=109.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~~-~~---l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 69 (171)
T cd03228 1 IEFKNVSFSYPGRPK-PV---LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLRDL-- 69 (171)
T ss_pred CEEEEEEEEcCCCCc-cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhhhc--
Confidence 578999999976421 14 677999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. . ...++.++|++|+ +.++..++.+|+
T Consensus 70 ~-~-~~~~~~i~~~~~~-----------~~~~~~t~~e~l---------------------------------------- 96 (171)
T cd03228 70 D-L-ESLRKNIAYVPQD-----------PFLFSGTIRENI---------------------------------------- 96 (171)
T ss_pred C-H-HHHHhhEEEEcCC-----------chhccchHHHHh----------------------------------------
Confidence 0 0 0012233444443 222221221111
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
||+||+||++||||| ||||++||. ++|+|++|| +.+..
T Consensus 97 ---------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 160 (171)
T cd03228 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD- 160 (171)
T ss_pred ---------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-
Confidence 999999999999999 999999984 789999999 45666
Q ss_pred ccEEEEEecCCe
Q 019066 285 TDRARIRTYLGE 296 (346)
Q Consensus 285 aDri~v~l~~G~ 296 (346)
||++++ |++|+
T Consensus 161 ~d~~~~-l~~g~ 171 (171)
T cd03228 161 ADRIIV-LDDGR 171 (171)
T ss_pred CCEEEE-EcCCC
Confidence 999965 98874
No 327
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=6.5e-32 Score=241.74 Aligned_cols=166 Identities=10% Similarity=0.063 Sum_probs=124.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++. . +.++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~-~------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~-- 66 (195)
T PRK13541 1 MLSLHQLQFNIEQK-N------LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNINN-- 66 (195)
T ss_pred CeEEEEeeEEECCc-E------EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccCh--
Confidence 48899999999652 2 444999999999999999999999999999999999 999999999988741
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. .++.++|++++...+..+ ++.+|+.+..... ...+++.++++.+++.+
T Consensus 67 ----~--~~~~~~~~~~~~~~~~~~----------tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~--------- 115 (195)
T PRK13541 67 ----I--AKPYCTYIGHNLGLKLEM----------TVFENLKFWSEIY------NSAETLYAAIHYFKLHD--------- 115 (195)
T ss_pred ----h--hhhhEEeccCCcCCCccC----------CHHHHHHHHHHhc------ccHHHHHHHHHHcCCHh---------
Confidence 1 112345555544322222 3444443322110 12346778889999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~ 283 (346)
..++.+.+|||||+||++||||+ ||||++||. +.|+|++|| .....
T Consensus 116 --------~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 116 --------LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK 187 (195)
T ss_pred --------hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccc
Confidence 45788999999999999999999 999999884 799999999 33333
Q ss_pred cccEE
Q 019066 284 LTDRA 288 (346)
Q Consensus 284 ~aDri 288 (346)
.||-+
T Consensus 188 ~~~~~ 192 (195)
T PRK13541 188 SAQIL 192 (195)
T ss_pred hhhee
Confidence 47766
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.98 E-value=1.1e-31 Score=275.66 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=143.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|+++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 2 ~~~i~~~nls~~~~~~~~--i---l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~---- 67 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKE--I---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAPG---- 67 (552)
T ss_pred cEEEEEeeEEEecCCCCe--e---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC----
Confidence 347999999999973233 4 677999999999999999999999999999999999 99999998641
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHH---hhhhcchhhccCCCh---------------------
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM---EGVRHGELVIRRSDS--------------------- 202 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~---~~i~~~~~~~~~~~~--------------------- 202 (346)
..++|++|++..+..+ +.+|+.+...... ..+............
T Consensus 68 -----------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (552)
T TIGR03719 68 -----------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136 (552)
T ss_pred -----------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 1357888887665554 7777654221100 000000000000000
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
.....++.++++.+++.. .++++.+||||||||++||||| ||||++||.
T Consensus 137 ~~~~~~~~~~l~~~~l~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~ 198 (552)
T TIGR03719 137 WDLDRKLEIAMDALRCPP------------------WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVA 198 (552)
T ss_pred chhHHHHHHHHhhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHH
Confidence 011244566677777743 3678899999999999999999 999999985
Q ss_pred ---------CceEEEEec--hhhhccccEEEEEecCCeEe-ecCCcccccc
Q 019066 270 ---------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 308 (346)
Q Consensus 270 ---------g~tviiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l~~ 308 (346)
+.|+|+||| +.+..+||++++ |++|+++ ..|+.++++.
T Consensus 199 ~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~-l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 199 WLEQHLQEYPGTVVAVTHDRYFLDNVAGWILE-LDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEE-EECCEEEEecCCHHHHHH
Confidence 679999999 578889999964 9999976 6788877654
No 329
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-31 Score=237.31 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=153.5
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||+.+-.+.+. + |++|||+|++||+.+|+||||||||||.++|+|.-. +.+++|+|.|+|+|+...
T Consensus 2 ~~L~I~dLhv~v~~~ke--I---LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~GedI~~l 73 (251)
T COG0396 2 MMLEIKDLHVEVEGKKE--I---LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGEDILEL 73 (251)
T ss_pred ceeEEeeeEEEecCchh--h---hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCcccccC
Confidence 47999999999977522 3 777999999999999999999999999999999853 228999999999999722
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+.....|..+...||.+..+.|. +.+.+....+. ..+.. .. ..+..+++.++++.+++++.
T Consensus 74 ---~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~-----~~~~~---~~-~~~~~~~~~e~~~~l~~~~~------ 135 (251)
T COG0396 74 ---SPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA-----RRGAR---GI-LPEFIKELKEKAELLGLDEE------ 135 (251)
T ss_pred ---CHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh-----hhccc---cc-cHHHHHHHHHHHHHcCCCHH------
Confidence 22223355666778888777766 44333222211 10000 00 23567888999999999984
Q ss_pred eeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCC----------------CCceEEEEec-hh
Q 019066 228 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH-GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tviiiTH-~~ 280 (346)
+++|+.+ .+|||||+|..|+.++ |||-|||| +|.++++||| ..
T Consensus 136 ----------~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 136 ----------FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred ----------HhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 4677776 5999999999999997 99999987 2899999999 55
Q ss_pred hhccc--cEEEEEecCCeEeecCCcccccc
Q 019066 281 LLSLT--DRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 281 ~~~~a--Dri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+..+. |++.| |.+|+|+.+|.+ ++..
T Consensus 206 ll~~i~pD~vhv-l~~GrIv~sG~~-el~~ 233 (251)
T COG0396 206 LLDYIKPDKVHV-LYDGRIVKSGDP-ELAE 233 (251)
T ss_pred HHhhcCCCEEEE-EECCEEEecCCH-HHHH
Confidence 55444 99975 999999999998 5543
No 330
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=242.00 Aligned_cols=192 Identities=14% Similarity=0.133 Sum_probs=147.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|+++.. |+|||++|++||.++|+||||||||||+++++|.+. |++|.+.+.|+..-.
T Consensus 29 ~~li~l~~v~v~r~gk~i------L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G~ 97 (257)
T COG1119 29 EPLIELKNVSVRRNGKKI------LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFGK 97 (257)
T ss_pred cceEEecceEEEECCEee------ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeeccC
Confidence 467999999999988654 777999999999999999999999999999999999 999999999987641
Q ss_pred cccccccccCCCCccceeecccccccchhhchH--hhHH-HHHhhhhcchhh----ccCCChHHHHHHHHHHHHHcCCCc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELV----IRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~--~~~~-~v~~~i~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
.. .. ++.+..+|+|.-.+. +... ++++-|..+... .+....++..+++..+++.+|+.+
T Consensus 98 ~~-------------~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~ 163 (257)
T COG1119 98 GE-------------TI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163 (257)
T ss_pred Cc-------------ch-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh
Confidence 10 11 333444444322211 1111 344444433221 111224567788999999999998
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC------------------CceE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPV 273 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tv 273 (346)
+.+++..+||-|||||+.||||| |||+++||. +.++
T Consensus 164 -----------------la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~l 226 (257)
T COG1119 164 -----------------LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPAL 226 (257)
T ss_pred -----------------hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceE
Confidence 67999999999999999999999 999999883 6789
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCC
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
|+||| +++....++++. +++|+++.+|.
T Consensus 227 l~VtHh~eEi~~~~th~ll-l~~g~v~~~g~ 256 (257)
T COG1119 227 LFVTHHAEEIPPCFTHRLL-LKEGEVVAQGK 256 (257)
T ss_pred EEEEcchhhcccccceEEE-eeCCceeeccc
Confidence 99999 678777788864 99999999874
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-31 Score=277.64 Aligned_cols=195 Identities=12% Similarity=0.094 Sum_probs=138.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++.. + |+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 1 ~i~i~nls~~~g~~~---~---l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~~~---- 65 (638)
T PRK10636 1 MIVFSSLQIRRGVRV---L---LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGNWQ---- 65 (638)
T ss_pred CEEEEEEEEEeCCce---e---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCCE----
Confidence 589999999997643 3 777999999999999999999999999999999999 9999999987431
Q ss_pred cccccccCCCCccceeecc----cccccchhhchHhhHH-HHHh------h--hhcchhh--ccCCChHHHHHHHHHHHH
Q 019066 150 FLQEYTIPRGSNSFSLYDT----RSLSDDASDNINMIKL-WIME------G--VRHGELV--IRRSDSSSLRNRMRCKAH 214 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~----~~~~~~v~qn~~~~~~-~v~~------~--i~~~~~~--~~~~~~~~~~~~~~~~l~ 214 (346)
++|+.|+. +...+++++....+.. +... + ..+.... .........+.++.++++
T Consensus 66 -----------i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 134 (638)
T PRK10636 66 -----------LAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLH 134 (638)
T ss_pred -----------EEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 12222221 1112223332222111 1000 0 0000000 000011234567889999
Q ss_pred HcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------Cce
Q 019066 215 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKP 272 (346)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~t 272 (346)
.+|+.+. .+++++.+||||||||++||||| ||||++||. +.|
T Consensus 135 ~lgl~~~----------------~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~t 198 (638)
T PRK10636 135 GLGFSNE----------------QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGT 198 (638)
T ss_pred hCCCCch----------------hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCe
Confidence 9999632 35888999999999999999999 999999984 779
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEee-cCCccccc
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIF 307 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~-~g~~~~l~ 307 (346)
||+||| .++..+||+++ +|++|+++. .|+.+...
T Consensus 199 viivsHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 199 LILISHDRDFLDPIVDKII-HIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEEEeCCHHHHHHhcCEEE-EEeCCEEEEecCCHHHHH
Confidence 999999 57889999996 499999974 56665444
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=8.8e-32 Score=250.90 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=131.2
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE-----------ECc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 142 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~-----------~~g 142 (346)
.||+++|+++.. + |+|+|+ +++||+++|+||||||||||+++|+|+++ |++|+|+ ++|
T Consensus 4 ~~~~~~y~~~~~--~---l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 4 DEPVHRYGPNSF--K---LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cCcceeecCcch--h---hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccC
Confidence 478999976433 4 666995 99999999999999999999999999999 9999996 667
Q ss_pred eeCCCcccccccccCC--CCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 143 SVGDGTYFLQEYTIPR--GSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 143 ~~i~~~~~~~~~~~~r--~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+++... . ....+ ..++++++....+ +.++.+++.+... ....++.+.++++.+++.+
T Consensus 73 ~~~~~~--~--~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~i~~~l~------~~~~~~~~~~~l~~~gl~~ 131 (255)
T cd03236 73 SELQNY--F--TKLLEGDVKVIVKPQYVDLI-----------PKAVKGKVGELLK------KKDERGKLDELVDQLELRH 131 (255)
T ss_pred chhhhh--h--HHhhhcccceeeecchhccC-----------chHHHHHHHHHhc------hhHHHHHHHHHHHHcCCch
Confidence 665310 0 00001 1123333332222 1122222222111 2234567889999999987
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
..++.+.+||+|||||++||||| ||||++||. ++|+|+
T Consensus 132 -----------------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIi 194 (255)
T cd03236 132 -----------------VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194 (255)
T ss_pred -----------------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45788999999999999999999 999999984 789999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCccccccCCCC
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 312 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 312 (346)
+|| +.+..+||++++ | +|++.+.| ++..|.+
T Consensus 195 iSHd~~~~~~~ad~i~~-l-~~~~~~~~----~~~~~~~ 227 (255)
T cd03236 195 VEHDLAVLDYLSDYIHC-L-YGEPGAYG----VVTLPKS 227 (255)
T ss_pred EECCHHHHHHhCCEEEE-E-CCCCCcce----eeecCcc
Confidence 999 567789999964 7 57676554 4566665
No 333
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.2e-31 Score=288.77 Aligned_cols=209 Identities=16% Similarity=0.134 Sum_probs=171.5
Q ss_pred hhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
+..|+.+.+..++..++. ....++++|.+++++....... |+||||+|++|+.+||+|+.|||||||+.
T Consensus 489 S~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~t---L~dIn~~i~~G~lvaVvG~vGsGKSSLL~ 565 (1381)
T KOG0054|consen 489 SLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPT---LKDINFEIKKGQLVAVVGPVGSGKSSLLS 565 (1381)
T ss_pred HHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCccc---ccceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 345677777555433222 2346999999999976332224 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|.|-.+ ..+|.|.++|. ++|++|. +.++..+|++||.||..
T Consensus 566 AiLGEm~-----~~sG~v~v~gs-----------------iaYv~Q~-----------pWI~ngTvreNILFG~~----- 607 (1381)
T KOG0054|consen 566 AILGEMP-----KLSGSVAVNGS-----------------VAYVPQQ-----------PWIQNGTVRENILFGSP----- 607 (1381)
T ss_pred HHhcCcc-----cccceEEEcCe-----------------EEEeccc-----------cHhhCCcHHHhhhcCcc-----
Confidence 9999999 99999999883 1455555 45556677777777643
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
-.+++-++.++.+.|.++++-+|+|=.|+|||+|. +||||||||+++|||+ |.|.|++|.
T Consensus 608 ---~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi------nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 608 ---YDEERYDKVIKACALKKDLEILPFGDLTEIGERGI------NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred ---ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc------CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 33567778899999999999999999999999977 9999999999999999 999999884
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
++|+|+||| -.....||.|++ |++|+|++.|+.+|+.+
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iiv-l~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV-LKDGKIVESGTYEELLK 731 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEE-ecCCeEecccCHHHHHh
Confidence 899999999 456667999965 99999999999999984
No 334
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=3.4e-31 Score=231.60 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=111.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~~~--~---l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~------- 63 (166)
T cd03223 1 IELENLSLATPDGRV--L---LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEG------- 63 (166)
T ss_pred CEEEEEEEEcCCCCe--e---eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCC-------
Confidence 578999999964333 4 777999999999999999999999999999999999 99999999763
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
+.++|++|+...+ ..++.+|+.++
T Consensus 64 --------~~i~~~~q~~~~~-----------~~tv~~nl~~~------------------------------------- 87 (166)
T cd03223 64 --------EDLLFLPQRPYLP-----------LGTLREQLIYP------------------------------------- 87 (166)
T ss_pred --------ceEEEECCCCccc-----------cccHHHHhhcc-------------------------------------
Confidence 1346777764322 12444444321
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec-hhhhccccE
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTDR 287 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH-~~~~~~aDr 287 (346)
++.+||||||||++||||| ||||++||. +.|+|++|| .....+||+
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~ 156 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDR 156 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCE
Confidence 1348999999999999999 999999984 789999999 344568999
Q ss_pred EEEEecCC
Q 019066 288 ARIRTYLG 295 (346)
Q Consensus 288 i~v~l~~G 295 (346)
+++ |+++
T Consensus 157 i~~-l~~~ 163 (166)
T cd03223 157 VLD-LDGE 163 (166)
T ss_pred EEE-EcCC
Confidence 965 7664
No 335
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.7e-31 Score=275.65 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=138.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. +
T Consensus 310 ~~~l~~~~l~~~y~~~~---i---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-~-- 375 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRI---I---LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-I-- 375 (638)
T ss_pred CceEEEEeeEEEeCCee---e---eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-E--
Confidence 45799999999997532 4 677999999999999999999999999999999999 99999998631 1
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.++|++|+.... + ..+ .++.+++.. ......++++.++|+.+++...
T Consensus 376 ------------~igy~~Q~~~~~--l-~~~-----~~~~~~~~~-------~~~~~~~~~~~~~L~~~~l~~~------ 422 (638)
T PRK10636 376 ------------KLGYFAQHQLEF--L-RAD-----ESPLQHLAR-------LAPQELEQKLRDYLGGFGFQGD------ 422 (638)
T ss_pred ------------EEEEecCcchhh--C-Ccc-----chHHHHHHH-------hCchhhHHHHHHHHHHcCCChh------
Confidence 235666653110 0 000 012222210 0012234678889999999642
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhc
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++|||+| ||||++||. +.|||+||| +++..
T Consensus 423 ----------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~ 492 (638)
T PRK10636 423 ----------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRS 492 (638)
T ss_pred ----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 24788999999999999999999 999999984 559999999 57888
Q ss_pred cccEEEEEecCCeEe-ecCCcccc
Q 019066 284 LTDRARIRTYLGELL-GIPPAKQI 306 (346)
Q Consensus 284 ~aDri~v~l~~G~iv-~~g~~~~l 306 (346)
+||++++ |++|+++ ..|+.++.
T Consensus 493 ~~d~i~~-l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 493 TTDDLYL-VHDGKVEPFDGDLEDY 515 (638)
T ss_pred hCCEEEE-EECCEEEEcCCCHHHH
Confidence 9999965 9999997 67777665
No 336
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=5.4e-31 Score=274.49 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=136.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|... .
T Consensus 3 ~l~i~~ls~~~~~~~---i---l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~~~~-~-- 68 (635)
T PRK11147 3 LISIHGAWLSFSDAP---L---LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQDLI-V-- 68 (635)
T ss_pred EEEEeeEEEEeCCce---e---EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCCCCE-E--
Confidence 699999999997643 3 777999999999999999999999999999999999 9999999987321 0
Q ss_pred cccccccCCCCccceeecc-cccccchhhchHhhH-----H-HH-------------Hhhhhcchhh---ccCCChHHHH
Q 019066 150 FLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIK-----L-WI-------------MEGVRHGELV---IRRSDSSSLR 206 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~-~~~~~~v~qn~~~~~-----~-~v-------------~~~i~~~~~~---~~~~~~~~~~ 206 (346)
+++.|.. +...++++|++.... . .. .+++...... .........+
T Consensus 69 ------------~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 136 (635)
T PRK11147 69 ------------ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLE 136 (635)
T ss_pred ------------EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHH
Confidence 1111111 111122333321000 0 00 1111110000 0000111245
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--------
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 269 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------- 269 (346)
.++.++++.+|+.. ++++.+|||||||||+||||| ||||++||.
T Consensus 137 ~~~~~~l~~lgl~~-------------------~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~ 197 (635)
T PRK11147 137 NRINEVLAQLGLDP-------------------DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG 197 (635)
T ss_pred HHHHHHHHhCCCCC-------------------CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH
Confidence 67889999999864 677899999999999999999 999999984
Q ss_pred -----CceEEEEec--hhhhccccEEEEEecCCeEee-cCCcccccc
Q 019066 270 -----DKPVVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIFD 308 (346)
Q Consensus 270 -----g~tviiiTH--~~~~~~aDri~v~l~~G~iv~-~g~~~~l~~ 308 (346)
+.|||+||| .++..+||+|+ +|++|+++. .|+..+.+.
T Consensus 198 ~L~~~~~tvlivsHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 198 FLKTFQGSIIFISHDRSFIRNMATRIV-DLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhcCeEE-EEECCEEEEecCCHHHHHH
Confidence 679999999 57888999996 499999985 577766544
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=4.2e-31 Score=271.54 Aligned_cols=185 Identities=14% Similarity=0.085 Sum_probs=138.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 322 ~~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~~-- 387 (556)
T PRK11819 322 DKVIEAENLSKSFGDRL---L---IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGE-TV-- 387 (556)
T ss_pred CeEEEEEeEEEEECCee---e---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECC-ce--
Confidence 45899999999997642 4 777999999999999999999999999999999999 9999999843 21
Q ss_pred cccccccccCCCCccceeecc-cccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT-RSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~-~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.++|++|+. ..+..+ +.+++ .++...... ... ...+..+++.+++.+.
T Consensus 388 ------------~i~~v~q~~~~~~~~~tv~e~l-----------~~~~~~~~~-~~~--~~~~~~~l~~~~l~~~---- 437 (556)
T PRK11819 388 ------------KLAYVDQSRDALDPNKTVWEEI-----------SGGLDIIKV-GNR--EIPSRAYVGRFNFKGG---- 437 (556)
T ss_pred ------------EEEEEeCchhhcCCCCCHHHHH-----------Hhhcccccc-ccc--HHHHHHHHHhCCCChh----
Confidence 246777764 233222 44443 332211100 111 2234578999999642
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhh
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 281 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. ..|+|+||| +.+
T Consensus 438 ------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~ 505 (556)
T PRK11819 438 ------------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFL 505 (556)
T ss_pred ------------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 24888999999999999999999 999999984 358999999 578
Q ss_pred hccccEEEEEecC-CeEe-ecCCccccccC
Q 019066 282 LSLTDRARIRTYL-GELL-GIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~-G~iv-~~g~~~~l~~~ 309 (346)
..+||++++ |++ |++. ..|+.++++++
T Consensus 506 ~~~~d~i~~-l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 506 DRIATHILA-FEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhCCEEEE-EECCCeEEEecCCHHHHHHH
Confidence 889999965 985 7876 36666555433
No 338
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.7e-31 Score=245.50 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=113.7
Q ss_pred ceeeeEEec-----CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceee
Q 019066 92 MTLSDYDVP-----KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 166 (346)
Q Consensus 92 L~~isl~i~-----~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~ 166 (346)
+.+++|++. +||+++|+||||||||||+++|+|+++ |++|+|.++|..+ +|++|
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~~i----------------~~~~q 68 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELDTV----------------SYKPQ 68 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCceE----------------EEecc
Confidence 555777776 799999999999999999999999999 9999999998533 46666
Q ss_pred cccccc-cchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCC
Q 019066 167 DTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 245 (346)
Q Consensus 167 d~~~~~-~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~ 245 (346)
+..... ..+.+++.... .... .....+.++++.+++.. ..++++.+
T Consensus 69 ~~~~~~~~tv~e~l~~~~-----------~~~~-----~~~~~~~~~l~~l~l~~-----------------~~~~~~~~ 115 (246)
T cd03237 69 YIKADYEGTVRDLLSSIT-----------KDFY-----THPYFKTEIAKPLQIEQ-----------------ILDREVPE 115 (246)
T ss_pred cccCCCCCCHHHHHHHHh-----------hhcc-----ccHHHHHHHHHHcCCHH-----------------HhhCChhh
Confidence 654322 22455433211 0000 01234567888999976 46888999
Q ss_pred CCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCC
Q 019066 246 SDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 246 LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G 295 (346)
||||||||++||||| ||||++||. ++|+|+||| +.+..+||++++ |+.+
T Consensus 116 LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~-l~~~ 192 (246)
T cd03237 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV-FEGE 192 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EcCC
Confidence 999999999999999 999999983 789999999 567889999964 7543
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=6e-31 Score=270.16 Aligned_cols=180 Identities=14% Similarity=0.092 Sum_probs=134.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 320 ~~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~-~~-- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL---L---IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGE-TV-- 385 (552)
T ss_pred CeEEEEeeEEEEECCee---e---eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECC-ce--
Confidence 45899999999997532 4 777999999999999999999999999999999999 9999999843 21
Q ss_pred cccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.++|++|+.. .+..+ ++.+|+.++..... .... +.++.++++.+++...
T Consensus 386 ------------~i~~v~q~~~~~~~~~----------tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~----- 435 (552)
T TIGR03719 386 ------------KLAYVDQSRDALDPNK----------TVWEEISGGLDIIQ-LGKR--EVPSRAYVGRFNFKGS----- 435 (552)
T ss_pred ------------EEEEEeCCccccCCCC----------cHHHHHHhhccccc-cCcc--hHHHHHHHHhCCCChh-----
Confidence 2467787742 23222 33334333221110 0111 2245578999999642
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+.
T Consensus 436 -----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~ 504 (552)
T TIGR03719 436 -----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLD 504 (552)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 24788999999999999999999 999999984 458999999 5788
Q ss_pred ccccEEEEEecC-CeEe-ecCCc
Q 019066 283 SLTDRARIRTYL-GELL-GIPPA 303 (346)
Q Consensus 283 ~~aDri~v~l~~-G~iv-~~g~~ 303 (346)
.+||++++ |++ |+++ ..|+.
T Consensus 505 ~~~d~i~~-l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 505 RIATHILA-FEGDSHVEWFEGNY 526 (552)
T ss_pred HhCCEEEE-EECCCeEEEeCCCH
Confidence 89999965 986 5776 34544
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=5.2e-31 Score=295.51 Aligned_cols=209 Identities=15% Similarity=0.084 Sum_probs=160.2
Q ss_pred hhHHHHHHhhhhhhhhcc---CCCcEEEeeeEEEeCCCC-------------------------------ceecccCcee
Q 019066 49 RDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPGA-------------------------------WIENVGGMTL 94 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~y~~~~-------------------------------~~~~l~~L~~ 94 (346)
+..|+.+++..++..... ....++++|++|.|+... ...+ |+|
T Consensus 368 s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~---l~~ 444 (1490)
T TIGR01271 368 AITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPV---LKN 444 (1490)
T ss_pred HHHHHHHHhcCcccccccccCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcc---eee
Confidence 345677777654322111 123489999999995310 0113 677
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 174 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~ 174 (346)
+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. ++|++|++..+.
T Consensus 445 i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g~-----------------iayv~Q~~~l~~-- 500 (1490)
T TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSGR-----------------ISFSPQTSWIMP-- 500 (1490)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCE-----------------EEEEeCCCccCC--
Confidence 999999999999999999999999999999999 99999999872 257777655443
Q ss_pred hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHH
Q 019066 175 ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 254 (346)
Q Consensus 175 v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv 254 (346)
.++++||.++... ..++..++++.++|.+++..+|+|+.|.||+++ .+||||||||+
T Consensus 501 ---------~Ti~eNI~~g~~~--------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g------~~LSgGqkqRi 557 (1490)
T TIGR01271 501 ---------GTIKDNIIFGLSY--------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG------ITLSGGQRARI 557 (1490)
T ss_pred ---------ccHHHHHHhcccc--------chHHHHHHHHHHhHHHHHHhccccccccccCcC------CCcCHHHHHHH
Confidence 3566666655321 112345566777888888999999999999994 49999999999
Q ss_pred HHHHhc---------CccccCCCC----------------CceEEEEech-hhhccccEEEEEecCCeEeecCCcccccc
Q 019066 255 IVATTF---------NCPYLSFRD----------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 255 ~IArAL---------DEPts~Ld~----------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+||||+ ||||++||. ++|+|+|||+ .....||+|+ +|++|++++.|+++++..
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii-~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKIL-LLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEE-EEECCEEEEEcCHHHHHh
Confidence 999999 999999984 7899999992 3334599996 499999999999988865
No 341
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=8.6e-31 Score=237.96 Aligned_cols=160 Identities=12% Similarity=0.115 Sum_probs=118.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE-ECceeCCCcccccccccCCCCccceeecccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 170 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~-~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~ 170 (346)
|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|. ++|..+. ++ +....
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~~~--------------~~---~~~~l 60 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDALP--------------LG---ANSFI 60 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCceec--------------cc---ccccc
Confidence 667999999999999999999999999999999999 9999997 7765431 01 11222
Q ss_pred cccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 171 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 171 ~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
+..+ +.+|+.++. .... ...... ...+.+..++.. ..++++.+||+|
T Consensus 61 ~~~ltv~enl~~~~-----------~~~~-~~~~~~---~~~~~~~~~l~~-----------------~~~~~~~~lS~G 108 (213)
T PRK15177 61 LPGLTGEENARMMA-----------SLYG-LDGDEF---SHFCYQLTQLEQ-----------------CYTDRVSEYSVT 108 (213)
T ss_pred CCcCcHHHHHHHHH-----------HHcC-CCHHHH---HHHHHHHhChhH-----------------HhhchHhhcCHH
Confidence 2232 445544322 1111 111211 223345566665 457889999999
Q ss_pred HHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCc
Q 019066 250 KQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 250 qrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
||||++||||| |||++++|+ +.|+|++|| ..+..+||++++ |++|+++..++.
T Consensus 109 ~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~-l~~G~i~~~~~~ 187 (213)
T PRK15177 109 MKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGV-LLHGKITMCEDL 187 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEE-EECCeEEEeCCH
Confidence 99999999999 999999874 678999999 567789999965 999999998877
Q ss_pred ccc
Q 019066 304 KQI 306 (346)
Q Consensus 304 ~~l 306 (346)
++.
T Consensus 188 ~~~ 190 (213)
T PRK15177 188 AQA 190 (213)
T ss_pred HHH
Confidence 654
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.8e-30 Score=272.59 Aligned_cols=179 Identities=12% Similarity=0.114 Sum_probs=137.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|+++.. + |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++.
T Consensus 506 ~~~L~~~~ls~~y~~~~~--i---l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~~---- 571 (718)
T PLN03073 506 PPIISFSDASFGYPGGPL--L---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSAK---- 571 (718)
T ss_pred CceEEEEeeEEEeCCCCe--e---EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECCc----
Confidence 368999999999965433 3 777999999999999999999999999999999999 99999998652
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..++|++|+.. ..+ +.++..+.... ... ...++++.++++.+++.+.
T Consensus 572 -----------~~igyv~Q~~~--~~l~~~~~~~~~~~~----------~~~----~~~~~~i~~~L~~~gl~~~----- 619 (718)
T PLN03073 572 -----------VRMAVFSQHHV--DGLDLSSNPLLYMMR----------CFP----GVPEQKLRAHLGSFGVTGN----- 619 (718)
T ss_pred -----------eeEEEEecccc--ccCCcchhHHHHHHH----------hcC----CCCHHHHHHHHHHCCCChH-----
Confidence 13467777642 111 22222111100 000 0113567889999999742
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|+||| +.+.
T Consensus 620 -----------~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~ 688 (718)
T PLN03073 620 -----------LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLIS 688 (718)
T ss_pred -----------HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 35788999999999999999999 999999984 459999999 5788
Q ss_pred ccccEEEEEecCCeEe-ecCCcc
Q 019066 283 SLTDRARIRTYLGELL-GIPPAK 304 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv-~~g~~~ 304 (346)
.+||++++ |++|+++ ..|+.+
T Consensus 689 ~~~drv~~-l~~G~i~~~~g~~~ 710 (718)
T PLN03073 689 GSVDELWV-VSEGKVTPFHGTFH 710 (718)
T ss_pred HhCCEEEE-EECCEEEEeCCCHH
Confidence 89999965 9999998 566554
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.1e-30 Score=269.20 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=134.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++. . |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ +
T Consensus 338 ~~~l~~~~ls~~~~~~--~-----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---~-- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF--S-----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---L-- 400 (590)
T ss_pred ceEEEEcceEEEECCE--E-----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---e--
Confidence 4689999999999652 2 777999999999999999999999999999999999 999999885 1
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.++|++|+......+ |.+++. +.... .. ....+.++++.+++.+
T Consensus 401 ------------~i~y~~Q~~~~~~~~tv~e~l~-----------~~~~~---~~---~~~~~~~~L~~l~l~~------ 445 (590)
T PRK13409 401 ------------KISYKPQYIKPDYDGTVEDLLR-----------SITDD---LG---SSYYKSEIIKPLQLER------ 445 (590)
T ss_pred ------------eEEEecccccCCCCCcHHHHHH-----------HHhhh---cC---hHHHHHHHHHHCCCHH------
Confidence 235777775433322 444433 21110 00 1234678899999986
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 446 -----------~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 446 -----------LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred -----------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46899999999999999999999 999999983 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
+++..+|||+++ |+ |++...|.
T Consensus 515 ~~~~~~aDrviv-l~-~~~~~~g~ 536 (590)
T PRK13409 515 YMIDYISDRLMV-FE-GEPGKHGH 536 (590)
T ss_pred HHHHHhCCEEEE-Ec-Ccceeeee
Confidence 568889999964 75 58877776
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.7e-30 Score=270.86 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=134.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~-- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQ---L---VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKL-- 382 (635)
T ss_pred CceEEEeeeEEEECCeE---E---EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCc--
Confidence 45799999999997632 4 677999999999999999999999999999999999 99999998 5432
Q ss_pred cccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.++|++|+.. .+..+ ++.+++.++.... .. .....++.++++.+++...
T Consensus 383 ------------~i~y~~q~~~~l~~~~----------tv~e~l~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~----- 432 (635)
T PRK11147 383 ------------EVAYFDQHRAELDPEK----------TVMDNLAEGKQEV-MV--NGRPRHVLGYLQDFLFHPK----- 432 (635)
T ss_pred ------------EEEEEeCcccccCCCC----------CHHHHHHhhcccc-cc--cchHHHHHHHHHhcCCCHH-----
Confidence 2367776542 22222 2333333221100 00 1113457788999998642
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|||+||| .++.
T Consensus 433 -----------~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 433 -----------RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVD 501 (635)
T ss_pred -----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 35788999999999999999999 999999984 569999999 5688
Q ss_pred ccccEEEEEec-CCeEeec
Q 019066 283 SLTDRARIRTY-LGELLGI 300 (346)
Q Consensus 283 ~~aDri~v~l~-~G~iv~~ 300 (346)
.+||++++ |+ +|+++..
T Consensus 502 ~~~d~i~~-l~~~g~i~~~ 519 (635)
T PRK11147 502 NTVTECWI-FEGNGKIGRY 519 (635)
T ss_pred HhcCEEEE-EeCCCeEEEc
Confidence 89999965 87 8998764
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=230.60 Aligned_cols=194 Identities=15% Similarity=0.127 Sum_probs=141.7
Q ss_pred cEEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
|+++.|+.+.|..+.. .++ |+++||+|.+|+++.|+|.||||||||+|+|+|-+. |++|+|+++|.++..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~---l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVtk 72 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRA---LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVTK 72 (263)
T ss_pred CcccccceeeecCCChhHHHH---HhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceeccc
Confidence 4678888888865532 236 555999999999999999999999999999999999 999999999999972
Q ss_pred cccccccccCCCCccceeecccc--cccchhhchHhhHHHHHhhhhcchhhcc--CCC---hHHHHHHHHHHHHHcCC--
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIR--RSD---SSSLRNRMRCKAHKIGC-- 218 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~--~~~~v~qn~~~~~~~v~~~i~~~~~~~~--~~~---~~~~~~~~~~~l~~~~l-- 218 (346)
....+. ...++.+|||+.. +..+ ++.+|+.+...+.. ... ....++...+.+..+++
T Consensus 73 ~~~~~R----A~~larVfQdp~~gt~~~l----------TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgL 138 (263)
T COG1101 73 KSVAKR----ANLLARVFQDPLAGTAPEL----------TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGL 138 (263)
T ss_pred CCHHHH----hhHHHHHhcchhhCCcccc----------cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccch
Confidence 111111 1123445555431 2222 56666665443210 111 12233344455666655
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cce
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 272 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~t 272 (346)
++ .++.+..-|||||||-++++.|. ||-|++||+ +.|
T Consensus 139 en-----------------rL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klT 201 (263)
T COG1101 139 EN-----------------RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLT 201 (263)
T ss_pred hh-----------------hhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCc
Confidence 44 56888999999999999999997 999999997 889
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEeecCCc
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
.+|||| +.+.++.+|.+ +|++|+||.+-.-
T Consensus 202 tlMVTHnm~~Al~yG~RlI-mLh~G~IvlDv~g 233 (263)
T COG1101 202 TLMVTHNMEDALDYGNRLI-MLHSGKIVLDVTG 233 (263)
T ss_pred eEEEeccHHHHHhhCCeEE-EEeCCeEEEEccc
Confidence 999999 68999999996 4999999987543
No 346
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=2.3e-30 Score=268.88 Aligned_cols=181 Identities=15% Similarity=0.137 Sum_probs=138.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC---CCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p---~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|+|+|++|++||+++|+||||||||||+++|+|..+ + .+|+|.++|.++. ... .++.++|++|+.
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~-----~~~~~~G~i~~~g~~~~------~~~-~~~~i~yv~Q~~ 108 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP-----KGVKGSGSVLLNGMPID------AKE-MRAISAYVQQDD 108 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEECC------HHH-Hhhhceeecccc
Confidence 666999999999999999999999999999999987 5 3799999999864 111 233556777766
Q ss_pred cccccchhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCC
Q 019066 169 RSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 246 (346)
Q Consensus 169 ~~~~~~v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~L 246 (346)
..+..+ +|++|+.++.... .....++.++++.++++.+|+.+ +.+|.||+.+ ....|
T Consensus 109 ~~~~~l----------TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~----~~~~L 167 (617)
T TIGR00955 109 LFIPTL----------TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-------CANTRIGVPG----RVKGL 167 (617)
T ss_pred ccCccC----------cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-------cCcCccCCCC----CCCCc
Confidence 544332 4444444433211 11223456678999999999976 2355555431 12479
Q ss_pred CHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h-hhhccccEEEEEecCCeEe
Q 019066 247 DVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G-DLLSLTDRARIRTYLGELL 298 (346)
Q Consensus 247 SgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~-~~~~~aDri~v~l~~G~iv 298 (346)
|||||||++||||| ||||++||. |+|+|+++| . .+.++||++++ |++|+++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l-l~~G~~v 246 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL-MAEGRVA 246 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE-eeCCeEE
Confidence 99999999999999 999999984 899999999 2 57889999965 9999999
Q ss_pred ecCCcccc
Q 019066 299 GIPPAKQI 306 (346)
Q Consensus 299 ~~g~~~~l 306 (346)
..|+++++
T Consensus 247 ~~G~~~~~ 254 (617)
T TIGR00955 247 YLGSPDQA 254 (617)
T ss_pred EECCHHHH
Confidence 99999877
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=8.6e-30 Score=217.74 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=103.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||++++||+++|+||||||||||+++|+|+++ |++|+|+++|+.
T Consensus 1 l~~~~l~~~~~~~~---~---l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (144)
T cd03221 1 IELENLSKTYGGKL---L---LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGSTV------ 63 (144)
T ss_pred CEEEEEEEEECCce---E---EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCeE------
Confidence 57899999997642 4 777999999999999999999999999999999999 999999998731
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.++|+++
T Consensus 64 ---------~i~~~~~---------------------------------------------------------------- 70 (144)
T cd03221 64 ---------KIGYFEQ---------------------------------------------------------------- 70 (144)
T ss_pred ---------EEEEEcc----------------------------------------------------------------
Confidence 1122211
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhcccc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLTD 286 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~~aD 286 (346)
||+||+||++||||| ||||++||. +.|+|++|| +.+..+||
T Consensus 71 ---------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d 135 (144)
T cd03221 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence 999999999999999 999999984 789999999 56778999
Q ss_pred EEEEEecCCe
Q 019066 287 RARIRTYLGE 296 (346)
Q Consensus 287 ri~v~l~~G~ 296 (346)
++++ |++|+
T Consensus 136 ~v~~-l~~g~ 144 (144)
T cd03221 136 KIIE-LEDGK 144 (144)
T ss_pred EEEE-EeCCC
Confidence 9965 98875
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=2.7e-29 Score=279.92 Aligned_cols=198 Identities=15% Similarity=0.097 Sum_probs=145.0
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+++++||++.|+.+. ...+ |+|||++|++||++||+||||||||||+++|+|+.+... +++|+|.++|+++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~i---L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~--~~~G~I~i~G~~~~-- 831 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVI---LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV--ITGGDRLVNGRPLD-- 831 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEe---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECC--
Confidence 589999999995211 1225 666999999999999999999999999999999986222 57899999999874
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc--CCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. . .++.++|++|+...+..+ +|++++.++..... ..+..+.+++++++++.++|.+.
T Consensus 832 ----~-~-~~~~i~yv~Q~~~~~~~~----------Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~----- 890 (1394)
T TIGR00956 832 ----S-S-FQRSIGYVQQQDLHLPTS----------TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY----- 890 (1394)
T ss_pred ----h-h-hhcceeeecccccCCCCC----------CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-----
Confidence 1 1 234567888765443332 34444443322111 12234556788999999999762
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc----------CccccCCCC----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
.++.|++. ...||||||||++||+|| ||||++||. |+|||++||
T Consensus 891 --~d~~v~~~------~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~ 962 (1394)
T TIGR00956 891 --ADAVVGVP------GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQP 962 (1394)
T ss_pred --CCCeeCCC------CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 12233322 227999999999999998 999999984 899999999
Q ss_pred hh-hhccccEEEEEecCC-eEeecCCcc
Q 019066 279 GD-LLSLTDRARIRTYLG-ELLGIPPAK 304 (346)
Q Consensus 279 ~~-~~~~aDri~v~l~~G-~iv~~g~~~ 304 (346)
+. +.+.+|++++ |++| ++++.|++.
T Consensus 963 ~~~~~~~~D~vl~-L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 963 SAILFEEFDRLLL-LQKGGQTVYFGDLG 989 (1394)
T ss_pred CHHHHHhcCEEEE-EcCCCEEEEECCcc
Confidence 33 4577999965 9987 999999874
No 349
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=7.8e-30 Score=214.78 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=134.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
++.++||+.+.++.-. |-+|||+|.+||++.|+||||||||||+..+.|.+.... .-+|+++++++++.
T Consensus 2 ~l~l~nvsl~l~g~cL------La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~l~--- 70 (213)
T COG4136 2 MLCLKNVSLRLPGSCL------LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQRLD--- 70 (213)
T ss_pred ceeeeeeeecCCCceE------EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCeecc---
Confidence 5789999988877543 777999999999999999999999999999999998443 35799999999986
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++++|+.|||.-+|..+ |.||+.+ .+.. ..+....+..+..+|++.||..
T Consensus 71 ---~lPa~qRq~GiLFQD~lLFphlsVg~Nl~f-----------Alp~--~~KG~aRr~~a~aAL~~~gL~g-------- 126 (213)
T COG4136 71 ---MLPAAQRQIGILFQDALLFPHLSVGQNLLF-----------ALPA--TLKGNARRNAANAALERSGLDG-------- 126 (213)
T ss_pred ---ccchhhhheeeeecccccccccccccceEE-----------ecCc--ccccHHHHhhHHHHHHHhccch--------
Confidence 2333466778888888777766 6666543 2211 1123455667888999999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG 279 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~ 279 (346)
..++.|.+||||||.||++-|+| |||+|.||. |..+|+|||+
T Consensus 127 ---------~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 127 ---------AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred ---------hhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 56899999999999999999998 999999883 9999999994
No 350
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=8.3e-30 Score=286.37 Aligned_cols=170 Identities=14% Similarity=0.100 Sum_probs=139.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+.+ .++|++|++..+
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~~-----------------~i~yv~Q~~~l~ 733 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAER-----------------SIAYVPQQAWIM 733 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC-----------------eEEEEeCCCccC
Confidence 777999999999999999999999999999999999 9999998632 346777776544
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
.+ ++.+||.++. ....++..++++..++.+++..+|+|++|.+|++ +.+||||||
T Consensus 734 ~~-----------Tv~enI~~~~--------~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~------g~~LSGGQk 788 (1560)
T PTZ00243 734 NA-----------TVRGNILFFD--------EEDAARLADAVRVSQLEADLAQLGGGLETEIGEK------GVNLSGGQK 788 (1560)
T ss_pred CC-----------cHHHHHHcCC--------hhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCC------CCCCCHHHH
Confidence 33 4555555432 1122445667788888888999999999998887 559999999
Q ss_pred HHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccc
Q 019066 252 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 252 QRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
||++||||| ||||++||. |+|+|+||| ......||+|+ +|++|++++.|++++
T Consensus 789 qRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii-~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV-ALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEEecCHHH
Confidence 999999999 999999983 789999999 33445799996 499999999999998
Q ss_pred cccC
Q 019066 306 IFDI 309 (346)
Q Consensus 306 l~~~ 309 (346)
++..
T Consensus 868 l~~~ 871 (1560)
T PTZ00243 868 FMRT 871 (1560)
T ss_pred HHhC
Confidence 8754
No 351
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=231.26 Aligned_cols=198 Identities=17% Similarity=0.178 Sum_probs=144.2
Q ss_pred cEEEeeeEEEeCCC------------------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCC
Q 019066 70 LTDAKNKILSYTPG------------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKF 131 (346)
Q Consensus 70 ~l~~~~l~~~y~~~------------------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~ 131 (346)
++.++||++.|.-. ..+.|++| |||+|++|++++++|+|||||||++|+|.|++.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqd---isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---- 75 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQD---ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---- 75 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhhe---eeeecCCCcEEEEEcCCCCcchhhHHHHhCccc----
Confidence 57788888877410 01236455 999999999999999999999999999999999
Q ss_pred CCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHH
Q 019066 132 ASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 211 (346)
Q Consensus 132 ~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 211 (346)
|++|.|.++|.+-.. .++ .. -+++++++-. ..++.++.+.+-...|...| ...+.+..+++...
T Consensus 76 -p~~G~v~V~G~~Pf~---~~~-~~-~~~~~~v~gq---k~ql~Wdlp~~ds~~v~~~I-------y~Ipd~~F~~r~~~ 139 (325)
T COG4586 76 -PTSGKVRVNGKDPFR---RRE-EY-LRSIGLVMGQ---KLQLWWDLPALDSLEVLKLI-------YEIPDDEFAERLDF 139 (325)
T ss_pred -cCCCeEEecCcCcch---hHH-HH-HHHHHHHhhh---hheeeeechhhhhHHHHHHH-------HhCCHHHHHHHHHH
Confidence 999999999987431 000 00 0012222111 11122333321111221111 12345667788999
Q ss_pred HHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------
Q 019066 212 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 269 (346)
Q Consensus 212 ~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------- 269 (346)
+.+.+++++ +++.+.+.||-|||.|+.||.|| ||||-+||-
T Consensus 140 l~eiLdl~~-----------------~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 140 LTEILDLEG-----------------FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred HHHHhcchh-----------------hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 999999998 56889999999999999999999 999999982
Q ss_pred ----CceEEEEec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 ----DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 ----g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.||++.|| +++..+||||+ .++.|+++.+|+.+++..
T Consensus 203 n~~~~aTVllTTH~~~di~~lc~rv~-~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 203 NEERQATVLLTTHIFDDIATLCDRVL-LIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHhhCceEEEEecchhhHHHhhhheE-EeeCCcEeecccHHHHHH
Confidence 899999999 78999999996 499999999988766543
No 352
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=9.2e-29 Score=223.85 Aligned_cols=168 Identities=14% Similarity=0.183 Sum_probs=134.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+||||++.+||.+||||+||||||||+|+|+|.++ |++|+|.++|+-.. ...+ ..||.++-
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v~G~v~~------li~l---g~Gf~pel---- 104 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKVTGKVAP------LIEL---GAGFDPEL---- 104 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEEcceEeh------hhhc---ccCCCccc----
Confidence 566999999999999999999999999999999999 99999999996532 0111 01222111
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
+..+|+.+.. ... ....++.++++.++.+...|.+ +.+.+..++|.||+
T Consensus 105 --TGreNi~l~~-----------~~~-G~~~~ei~~~~~eIieFaELG~-----------------fi~~PvktYSSGM~ 153 (249)
T COG1134 105 --TGRENIYLRG-----------LIL-GLTRKEIDEKVDEIIEFAELGD-----------------FIDQPVKTYSSGMY 153 (249)
T ss_pred --chHHHHHHHH-----------HHh-CccHHHHHHHHHHHHHHHHHHH-----------------HhhCchhhccHHHH
Confidence 1344544322 111 2346788999999999999999 56999999999999
Q ss_pred HHHHHHHhc---------CccccCCC----------------CCceEEEEec--hhhhccccEEEEEecCCeEeecCCcc
Q 019066 252 YNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 252 QRv~IArAL---------DEPts~Ld----------------~g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~ 304 (346)
-|+++|-|. ||-.+.-| ++.|+|+||| +.+.++|||++ +|++|+|...|+++
T Consensus 154 aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i-~l~~G~i~~~G~~~ 232 (249)
T COG1134 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAI-WLEHGQIRMEGSPE 232 (249)
T ss_pred HHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeE-EEeCCEEEEcCCHH
Confidence 999999998 88888855 2899999999 67999999996 59999999999999
Q ss_pred ccccC
Q 019066 305 QIFDI 309 (346)
Q Consensus 305 ~l~~~ 309 (346)
+++..
T Consensus 233 ~vi~~ 237 (249)
T COG1134 233 EVIPA 237 (249)
T ss_pred HHHHH
Confidence 88754
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=2.7e-29 Score=263.68 Aligned_cols=208 Identities=10% Similarity=-0.023 Sum_probs=134.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++|++++|++.. + |+|+||+|.+|+++|||||||||||||+++|+|..... .|++|+|.+.++++...
T Consensus 176 ~~I~i~nls~~y~~~~---l---l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g--~p~~g~I~~~~Q~~~g~ 247 (718)
T PLN03073 176 KDIHMENFSISVGGRD---L---IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG--IPKNCQILHVEQEVVGD 247 (718)
T ss_pred eeEEEceEEEEeCCCE---E---EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCCCCEEEEEeccCCCC
Confidence 3699999999997543 3 77799999999999999999999999999999975211 28899998776654210
Q ss_pred ccccccc----cCCCCccceeecccccccchhhchHhhHHHHHhhh-----------------hcchhhccCCChHHHHH
Q 019066 149 YFLQEYT----IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV-----------------RHGELVIRRSDSSSLRN 207 (346)
Q Consensus 149 ~~~~~~~----~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i-----------------~~~~~~~~~~~~~~~~~ 207 (346)
...... .......+ .....++++|++.+.......+. ..-............++
T Consensus 248 -~~t~~~~v~~~~~~~~~~----~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (718)
T PLN03073 248 -DTTALQCVLNTDIERTQL----LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEA 322 (718)
T ss_pred -CCCHHHHHHHhhHHHHHH----HHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHH
Confidence 000000 00000000 00001222222211110000110 00000000001113456
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 269 (346)
++.++|..+|+.+. ..++++.+||||||||++||||| ||||++||.
T Consensus 323 r~~~~L~~lgl~~~----------------~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 386 (718)
T PLN03073 323 RAASILAGLSFTPE----------------MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETY 386 (718)
T ss_pred HHHHHHHHCCCChH----------------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 77788888888642 35788999999999999999999 999999984
Q ss_pred ----CceEEEEec--hhhhccccEEEEEecCCeEe-ecCCcccc
Q 019066 270 ----DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQI 306 (346)
Q Consensus 270 ----g~tviiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l 306 (346)
+.|+|+||| +.+..+||++++ |++|+++ ..|+.+.+
T Consensus 387 L~~~~~tviivsHd~~~l~~~~d~i~~-l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 387 LLKWPKTFIVVSHAREFLNTVVTDILH-LHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEEEE-EECCEEEEeCCCHHHH
Confidence 789999999 568889999965 9999996 56665544
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=1.3e-28 Score=274.38 Aligned_cols=194 Identities=9% Similarity=0.062 Sum_probs=143.2
Q ss_pred cEEEeeeEEEeCCC----------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE
Q 019066 70 LTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 139 (346)
Q Consensus 70 ~l~~~~l~~~y~~~----------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~ 139 (346)
.+.++||++..+.. ....+ |+|||++|++|++++|+||||||||||+++|+|..+.. +.+|+|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~i---L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~ 940 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQL---LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIR 940 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceE---eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEE
Confidence 48999999987421 11125 66699999999999999999999999999999987521 3689999
Q ss_pred ECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcC
Q 019066 140 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIG 217 (346)
Q Consensus 140 ~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 217 (346)
++|.+.. ... .++.++|++|+...+..+ +|.+++.++.... ...+..+..++++++++.++
T Consensus 941 inG~~~~------~~~-~~~~igyv~Q~d~~~~~l----------TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lg 1003 (1470)
T PLN03140 941 ISGFPKK------QET-FARISGYCEQNDIHSPQV----------TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003 (1470)
T ss_pred ECCccCC------hHH-hhhheEEEccccccCCCC----------cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCC
Confidence 9998754 111 133457777765544333 4444444432111 11123445567899999999
Q ss_pred CCcccccccceeeeeechhhhcccCC-----CCCCHHHHHHHHHHHhc---------CccccCCCC--------------
Q 019066 218 CEPSVIRKVNFVIFVVDGLAVLKSME-----GDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 269 (346)
Q Consensus 218 l~~~~~~~~~~~~~~v~e~~~~~~~~-----~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------- 269 (346)
|.+ ..++.+ ..||||||||++||++| ||||++||.
T Consensus 1004 L~~-----------------~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~ 1066 (1470)
T PLN03140 1004 LDN-----------------LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1066 (1470)
T ss_pred Chh-----------------HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 986 334443 58999999999999999 999999984
Q ss_pred --CceEEEEec--h-hhhccccEEEEEecC-CeEeecCCcc
Q 019066 270 --DKPVVVVTH--G-DLLSLTDRARIRTYL-GELLGIPPAK 304 (346)
Q Consensus 270 --g~tviiiTH--~-~~~~~aDri~v~l~~-G~iv~~g~~~ 304 (346)
|+|||++|| + .+...||++++ |++ |+++..|++.
T Consensus 1067 ~~g~tVI~t~Hq~~~~i~~~~D~vll-L~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1067 DTGRTVVCTIHQPSIDIFEAFDELLL-MKRGGQVIYSGPLG 1106 (1470)
T ss_pred HCCCEEEEEeCCCCHHHHHhCCEEEE-EcCCCEEEEECCcc
Confidence 899999999 3 46788999965 986 8999999863
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=3.7e-29 Score=258.02 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=128.9
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE-----------ECc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 142 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~-----------~~g 142 (346)
++++++|+.... + |++++ .+++||++||+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 77 ~~~~~~yg~~~~--~---L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 77 EEPVHRYGVNGF--K---LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred cCceEEecCCce--e---EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCC
Confidence 348899986443 4 67799 899999999999999999999999999999 9999997 888
Q ss_pred eeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccc
Q 019066 143 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 143 ~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
+++.. +. .........+++.+ +++.+.+.++..++.+++.. ...++++.++++.+++..
T Consensus 146 ~~l~~-~~-~~~~~~~~~~~~~~-------q~~~~~p~~~~~tv~e~l~~----------~~~~~~~~~~l~~l~l~~-- 204 (590)
T PRK13409 146 TELQN-YF-KKLYNGEIKVVHKP-------QYVDLIPKVFKGKVRELLKK----------VDERGKLDEVVERLGLEN-- 204 (590)
T ss_pred hHHHH-HH-HHHhccCcceeecc-------cchhhhhhhhcchHHHHHHh----------hhHHHHHHHHHHHcCCch--
Confidence 87641 00 00000001112222 22334444444456666541 123467889999999986
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 278 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH 278 (346)
.+++.+.+||||||||++||+|| ||||++||. |.|+|+|||
T Consensus 205 ---------------~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsH 269 (590)
T PRK13409 205 ---------------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEH 269 (590)
T ss_pred ---------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899999999999999999999 999999883 789999999
Q ss_pred --hhhhccccEEEEEecC
Q 019066 279 --GDLLSLTDRARIRTYL 294 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~ 294 (346)
+.+..+||++.+ |++
T Consensus 270 d~~~l~~~~D~v~v-l~~ 286 (590)
T PRK13409 270 DLAVLDYLADNVHI-AYG 286 (590)
T ss_pred CHHHHHHhCCEEEE-EeC
Confidence 578889999964 875
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=8.2e-29 Score=276.11 Aligned_cols=199 Identities=14% Similarity=0.144 Sum_probs=141.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|||+++++||+++|+||||||||||+|+|+|..... ..|++|+|.++|+++... ....++.++|++|+...+
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-~~~~~G~I~~~G~~~~~~-----~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF-HIGVEGVITYDGITPEEI-----KKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CCCceeEEEECCEehHHH-----HhhcCceeEEeccccccC
Confidence 66799999999999999999999999999999986310 117899999999886410 011233567777765555
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhcc------CCChHHHHHH-HHHHHHHcCCCcccccccceeeeeechhhhcccCC
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIR------RSDSSSLRNR-MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 243 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~------~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~ 243 (346)
..+ |.|++. ++..... ...+.+..++ ++.+++.+||.+. .+|.|| +..+
T Consensus 151 ~~lTV~E~l~-----------f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~~t~vg-----~~~~ 207 (1394)
T TIGR00956 151 PHLTVGETLD-----------FAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT-------RNTKVG-----NDFV 207 (1394)
T ss_pred CCCCHHHHHH-----------HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc-------cCceeC-----CCcC
Confidence 443 555544 3322110 1122332333 4668999999762 233333 3456
Q ss_pred CCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec---hhhhccccEEEEEecC
Q 019066 244 GDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYL 294 (346)
Q Consensus 244 ~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH---~~~~~~aDri~v~l~~ 294 (346)
..|||||||||+||+|| ||||++||. |+|+|+++| ..+.+++|++++ |++
T Consensus 208 ~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~-L~~ 286 (1394)
T TIGR00956 208 RGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIV-LYE 286 (1394)
T ss_pred CCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE-EeC
Confidence 78999999999999999 999999984 789999999 358889999965 999
Q ss_pred CeEeecCCcccc--------ccCCCCCChHHHHH
Q 019066 295 GELLGIPPAKQI--------FDIPESSDPENELI 320 (346)
Q Consensus 295 G~iv~~g~~~~l--------~~~~~~~~~~~~~~ 320 (346)
|+++..|+++++ +..|.+..+..++.
T Consensus 287 G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~ 320 (1394)
T TIGR00956 287 GYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLT 320 (1394)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 999999999877 34455444444443
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=1.2e-28 Score=217.57 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=98.3
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 153 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (346)
.||+++|++.. + ++++ |+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++
T Consensus 4 ~~l~~~~~~~~---~---l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i-------- 63 (177)
T cd03222 4 PDCVKRYGVFF---L---LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGITP-------- 63 (177)
T ss_pred CCeEEEECCEE---E---EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCEEE--------
Confidence 58999997632 3 5555 9999999999999999999999999999999 9999999988543
Q ss_pred cccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeee
Q 019066 154 YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVV 233 (346)
Q Consensus 154 ~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v 233 (346)
++++|+.
T Consensus 64 --------~~~~q~~----------------------------------------------------------------- 70 (177)
T cd03222 64 --------VYKPQYI----------------------------------------------------------------- 70 (177)
T ss_pred --------EEEcccC-----------------------------------------------------------------
Confidence 1222110
Q ss_pred chhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C-ceEEEEec--hhhhccc
Q 019066 234 DGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--GDLLSLT 285 (346)
Q Consensus 234 ~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g-~tviiiTH--~~~~~~a 285 (346)
.||||||||++||||| ||||++||. + .|+|++|| +.+.++|
T Consensus 71 -----------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 139 (177)
T cd03222 71 -----------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS 139 (177)
T ss_pred -----------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC
Confidence 1999999999999999 999999983 3 89999999 5678899
Q ss_pred cEEEEEecCCeE
Q 019066 286 DRARIRTYLGEL 297 (346)
Q Consensus 286 Dri~v~l~~G~i 297 (346)
|++++ |+++-.
T Consensus 140 d~i~~-l~~~~~ 150 (177)
T cd03222 140 DRIHV-FEGEPG 150 (177)
T ss_pred CEEEE-EcCCCc
Confidence 99964 876543
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=6.5e-28 Score=244.18 Aligned_cols=192 Identities=16% Similarity=0.112 Sum_probs=139.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|.++|+++.|++... |+++||+|.+|+++||||+||||||||||+|+|... |++|+|...+. +
T Consensus 2 ~~i~~~~ls~~~g~~~l------~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-~--- 66 (530)
T COG0488 2 SMITLENLSLAYGDRPL------LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-L--- 66 (530)
T ss_pred ceEEEeeeEEeeCCcee------ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-c---
Confidence 47999999999966543 788999999999999999999999999999999999 99999998752 1
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHh------hhh----------cchh--hccCCChHHHHHHH
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIME------GVR----------HGEL--VIRRSDSSSLRNRM 209 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~------~i~----------~~~~--~~~~~~~~~~~~~~ 209 (346)
.+++..|+....... |.+.+......+.+ .+. .+.. .......-..+.++
T Consensus 67 -----------~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~ 135 (530)
T COG0488 67 -----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARA 135 (530)
T ss_pred -----------eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHH
Confidence 225666666555432 44333221110000 000 0000 00000112335778
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------- 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------- 269 (346)
..+|..+|+.+ . +++..+||||||.||+||+|| ||||+.||-
T Consensus 136 ~~~L~gLg~~~-----------------~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~ 197 (530)
T COG0488 136 EEALLGLGFPD-----------------E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK 197 (530)
T ss_pred HHHHhcCCCCc-----------------c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence 88999999987 3 678899999999999999999 999999982
Q ss_pred ---CceEEEEec--hhhhccccEEEEEecCCeEeec-CCcccc
Q 019066 270 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELLGI-PPAKQI 306 (346)
Q Consensus 270 ---g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~-g~~~~l 306 (346)
| |+|+||| .++-..|++|+ .++.|++... |.-+..
T Consensus 198 ~~~g-tviiVSHDR~FLd~V~t~I~-~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 198 RYPG-TVIVVSHDRYFLDNVATHIL-ELDRGKLTPYKGNYSSY 238 (530)
T ss_pred hCCC-cEEEEeCCHHHHHHHhhheE-EecCCceeEecCCHHHH
Confidence 6 9999999 57889999996 5999987654 444433
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1e-27 Score=207.21 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=103.3
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++++++.|++.. + |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 ~~~~~~~~~~~~~---~---l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~~---- 65 (157)
T cd00267 1 EIENLSFRYGGRT---A---LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAK---- 65 (157)
T ss_pred CeEEEEEEeCCee---e---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEccc----
Confidence 3689999997642 3 777999999999999999999999999999999999 999999999987640
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
... .. ....+++
T Consensus 66 -----------~~~-------------------------------------~~-------~~~~i~~------------- 77 (157)
T cd00267 66 -----------LPL-------------------------------------EE-------LRRRIGY------------- 77 (157)
T ss_pred -----------CCH-------------------------------------HH-------HHhceEE-------------
Confidence 000 00 0000111
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhcc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~~ 284 (346)
..+||+||+||++||||+ ||||++||. +.|+|++|| +.+..+
T Consensus 78 -----------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 78 -----------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred -----------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 112999999999999999 999999984 589999999 577788
Q ss_pred ccEEEEEecCCe
Q 019066 285 TDRARIRTYLGE 296 (346)
Q Consensus 285 aDri~v~l~~G~ 296 (346)
||++++ +++|+
T Consensus 147 ~d~i~~-l~~g~ 157 (157)
T cd00267 147 ADRVIV-LKDGK 157 (157)
T ss_pred CCEEEE-EeCcC
Confidence 999965 88764
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=4.2e-28 Score=270.26 Aligned_cols=206 Identities=15% Similarity=0.178 Sum_probs=147.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC---CceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|+|||+.|++||+++|+||||||||||+|+|+|.++ |+ +|+|.++|+++. +.. .++.++|++|+.
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~~~------~~~-~~~~i~yv~Q~d 248 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYRLN------EFV-PRKTSAYISQND 248 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEech------hhc-ccceeEEecccc
Confidence 666999999999999999999999999999999998 77 999999999875 111 144678888876
Q ss_pred cccccc-hhhchHhhHHHHHhhhhcch--hhccC------CChHH--------------HHHHHHHHHHHcCCCcccccc
Q 019066 169 RSLSDD-ASDNINMIKLWIMEGVRHGE--LVIRR------SDSSS--------------LRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 169 ~~~~~~-v~qn~~~~~~~v~~~i~~~~--~~~~~------~~~~~--------------~~~~~~~~l~~~~l~~~~~~~ 225 (346)
..+..+ |.|++.+....-...-.... ...+. .+..+ ....+.++++.+||.+
T Consensus 249 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~----- 323 (1470)
T PLN03140 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDI----- 323 (1470)
T ss_pred cCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc-----
Confidence 666554 66666553321000000000 00000 00000 0123567899999975
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..+|.|| ++.+..|||||||||+||++| ||||+|||. |+|+|+++|
T Consensus 324 --~~~t~vg-----~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hq 396 (1470)
T PLN03140 324 --CKDTIVG-----DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQ 396 (1470)
T ss_pred --ccCceeC-----CccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 2345554 456789999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccc--------cCCCCCChHHHHHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIF--------DIPESSDPENELIIV 322 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~--------~~~~~~~~~~~~~~~ 322 (346)
..+.+++|+|++ |++|+++..|+.+++. ..|....+..++..+
T Consensus 397 p~~~i~~lfD~vil-L~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v 449 (1470)
T PLN03140 397 PAPETFDLFDDIIL-LSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEV 449 (1470)
T ss_pred CCHHHHHHhheEEE-eeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHh
Confidence 368899999965 9999999999998874 456666666666543
No 361
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=3.8e-27 Score=207.87 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=96.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||+|++|++++|+||||||||||+|+|. +++|++.++|..-. ..+..+.|
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---------~~~G~v~~~~~~~~---------~~~~~~~~-------- 64 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---------YASGKARLISFLPK---------FSRNKLIF-------- 64 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---------hcCCcEEECCcccc---------cccccEEE--------
Confidence 56699999999999999999999999999983 24799988764211 00000111
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
++| .++++.+++... .+++++.+||||||
T Consensus 65 ---~~q--------------------------------~~~l~~~~L~~~----------------~~~~~~~~LSgGq~ 93 (176)
T cd03238 65 ---IDQ--------------------------------LQFLIDVGLGYL----------------TLGQKLSTLSGGEL 93 (176)
T ss_pred ---EhH--------------------------------HHHHHHcCCCcc----------------ccCCCcCcCCHHHH
Confidence 111 246788888652 14778999999999
Q ss_pred HHHHHHHhc-----------CccccCCCC----------------CceEEEEec-hhhhccccEEEEEecCCeE
Q 019066 252 YNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 252 QRv~IArAL-----------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~~G~i 297 (346)
||++||||| ||||++||. |.|||++|| ....+.||++++ |++|+.
T Consensus 94 qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~-l~~g~~ 166 (176)
T cd03238 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIID-FGPGSG 166 (176)
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE-ECCCCC
Confidence 999999998 999999884 899999999 333467999964 966554
No 362
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-27 Score=204.99 Aligned_cols=187 Identities=17% Similarity=0.155 Sum_probs=135.7
Q ss_pred cEEEeeeEEEeC----CCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 70 LTDAKNKILSYT----PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 70 ~l~~~~l~~~y~----~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.|.++||+|+|. ++-...+ |+++||+++.||+++|-||||+|||||+|+|.+-|. |++|+|++.-..-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV---~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPV---LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeecCCEEeee---eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCcc
Confidence 489999999983 2322235 666999999999999999999999999999999999 9999999964432
Q ss_pred CCccc-ccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 146 DGTYF-LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 146 ~~~~~-~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
..... .+... +..-.+.-+|+|.|.+...+. ...+-+..++. ....+.+..++++..+|.++++++.+
T Consensus 76 ~vdl~~a~pr~--------vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll-~~gv~~~~a~~~a~~Ll~rLnlperL- 145 (235)
T COG4778 76 WVDLVTAEPRE--------VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-ARGVPREVARAKAADLLTRLNLPERL- 145 (235)
T ss_pred hhhhhccChHH--------HHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCCHHH-
Confidence 11000 11111 111122334455555544443 33343444433 23445677889999999999999864
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
..-.|.++||||||||-|||.+ ||||++||. |.++|=|-|
T Consensus 146 ---------------W~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFH 210 (235)
T COG4778 146 ---------------WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210 (235)
T ss_pred ---------------hcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeec
Confidence 4668999999999999999998 999999984 899999999
Q ss_pred -hhh-hccccEEE
Q 019066 279 -GDL-LSLTDRAR 289 (346)
Q Consensus 279 -~~~-~~~aDri~ 289 (346)
+.+ ...|||+.
T Consensus 211 Deevre~vadR~~ 223 (235)
T COG4778 211 DEEVREAVADRLL 223 (235)
T ss_pred cHHHHHHHhhhee
Confidence 444 45799994
No 363
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=208.28 Aligned_cols=162 Identities=12% Similarity=0.174 Sum_probs=119.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+++.+|++..-++.. . +.++||++.+||.+-|.||||||||||+|+|+|+.+ |++|+|+++|..+..
T Consensus 2 ~L~a~~L~~~R~e~~---l---f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~-- 68 (209)
T COG4133 2 MLEAENLSCERGERT---L---FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQN-- 68 (209)
T ss_pred cchhhhhhhccCcce---e---ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCcc--
Confidence 477888887766543 3 777999999999999999999999999999999999 999999999988751
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
..+.+ ++..-|.-........+ ++.+|+.|-...+.. ...+.+.++++.+||..
T Consensus 69 ~~~~~---~~~l~yLGH~~giK~eL----------Ta~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g--------- 122 (209)
T COG4133 69 VRESY---HQALLYLGHQPGIKTEL----------TALENLHFWQRFHGS----GNAATIWEALAQVGLAG--------- 122 (209)
T ss_pred chhhH---HHHHHHhhccccccchh----------hHHHHHHHHHHHhCC----CchhhHHHHHHHcCccc---------
Confidence 00000 01111221122222222 444444443222221 22456888999999998
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
+.+-+..+||-|||+||+|||-+ |||+++||+ |-.||+.||
T Consensus 123 --------~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttH 188 (209)
T COG4133 123 --------LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188 (209)
T ss_pred --------ccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 56889999999999999999997 999999985 778999999
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=6e-27 Score=242.29 Aligned_cols=202 Identities=16% Similarity=0.170 Sum_probs=153.0
Q ss_pred cEEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.+++++....++. ..++ |++||.++++||++||+||||||||||+++|+|-...+. ..+|+|++||+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~i---L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~--~~~G~ilvNG~~~~- 98 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTI---LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL--KLSGEILLNGRPRD- 98 (613)
T ss_pred eeEEEEEEEEecCCCCcccee---eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCC--cceEEEEECCccCc-
Confidence 488999999886542 2335 666999999999999999999999999999999987332 57899999996543
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh--ccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
....++..+|+.||-..+..+ +|++.+.+.... .......+.+++++++++.+||..-
T Consensus 99 ------~~~~~~~s~yV~QdD~l~~~L----------TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~---- 158 (613)
T KOG0061|consen 99 ------SRSFRKISGYVQQDDVLLPTL----------TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC---- 158 (613)
T ss_pred ------hhhhhheeEEEcccccccccc----------cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh----
Confidence 122233456777776555444 444444443221 1223467888999999999999851
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
=+|+||-.+ ...+|||||+||+||.-| ||||+|||. |+|||++-|
T Consensus 159 ---~~t~ig~~~-----~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQP 230 (613)
T KOG0061|consen 159 ---ADTLIGNPG-----IRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQP 230 (613)
T ss_pred ---ccceecCCC-----CCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence 234444331 147999999999999998 999999984 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
..+.++.|+++ +|.+|+++..|+++++
T Consensus 231 ss~lf~lFD~l~-lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 231 SSELFELFDKLL-LLSEGEVVYSGSPREL 258 (613)
T ss_pred cHHHHHHHhHhh-hhcCCcEEEecCHHHH
Confidence 46888999996 4999999999998765
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=2.9e-26 Score=210.10 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=63.8
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC---------
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--------- 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~--------- 269 (346)
.++++.+++.+. .+++++.+|||||+||++||||| ||||++||.
T Consensus 118 ~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~ 181 (226)
T cd03270 118 LGFLVDVGLGYL----------------TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIET 181 (226)
T ss_pred HHHHHHCCCCcc----------------cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 568999999752 25889999999999999999987 999999884
Q ss_pred -------CceEEEEec-hhhhccccEEEEEe------cCCeEeecC
Q 019066 270 -------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIP 301 (346)
Q Consensus 270 -------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g 301 (346)
|.|+|+||| .....+||++++ | ++|+|+++|
T Consensus 182 l~~~~~~g~tii~itH~~~~~~~~d~i~~-l~~~~~~~~G~iv~~g 226 (226)
T cd03270 182 LKRLRDLGNTVLVVEHDEDTIRAADHVID-IGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCEEEEEEeCHHHHHhCCEEEE-eCCCccccCCEEEecC
Confidence 789999999 233468999964 9 999999876
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=8.4e-27 Score=196.21 Aligned_cols=128 Identities=15% Similarity=0.201 Sum_probs=93.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+||||+|++|++++|+|+||||||||+++|+|+++ |++|.|.++|.++.. ......++.+++++++...+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~ 71 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDISD----IDIEELRRRIGYVPQDPQLF 71 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGTT----SHHHHHHHTEEEEESSHCHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----ccccccccccccccc----cccccccccccccccccccc
Confidence 567999999999999999999999999999999999 999999999999862 01111233445555553333
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
..+ ++.+| ...+++.++++.+++.+.... ..++.+..||+|||
T Consensus 72 ~~~----------tv~~~--------------~~~~~~~~~l~~l~~~~~~~~-------------~~~~~~~~LS~Ge~ 114 (137)
T PF00005_consen 72 PGL----------TVREN--------------ESDERIEEVLKKLGLEDLLDR-------------KIGQRASSLSGGEK 114 (137)
T ss_dssp TTS----------BHHHH--------------HHHHHHHHHHHHTTHGGGTGS-------------BGTSCGGGSCHHHH
T ss_pred ccc----------ccccc--------------ccccccccccccccccccccc-------------ccccccchhhHHHH
Confidence 322 23222 234557778888887652100 23455599999999
Q ss_pred HHHHHHHhc---------Ccccc
Q 019066 252 YNQIVATTF---------NCPYL 265 (346)
Q Consensus 252 QRv~IArAL---------DEPts 265 (346)
||++||||| ||||+
T Consensus 115 ~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 115 QRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC
Confidence 999999999 99986
No 367
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.93 E-value=3.5e-26 Score=245.66 Aligned_cols=196 Identities=14% Similarity=0.167 Sum_probs=160.5
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
..+.++|+++.|+.... |+++ +||.|++||+.|+.|+|||||||++++|.|... |++|++++.|.++...
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~---ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~~ 632 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRG---LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITVS 632 (885)
T ss_pred ceEEEcceeeeecchhh--hhcc---eEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCccccc
Confidence 56899999999987654 6555 999999999999999999999999999999999 9999999999988511
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....++.+||++|.-.....+ ..|...++.. .++.+.....+.++++++.++|.+
T Consensus 633 ~---~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ar------------lrG~~~~di~~~v~~ll~~~~L~~------- 690 (885)
T KOG0059|consen 633 T---DFQQVRKQLGYCPQFDALWEELTGREHLEFYAR------------LRGLPRSDIGSAIEKLLRLVGLGP------- 690 (885)
T ss_pred c---chhhhhhhcccCCchhhhhhhccHHHHHHHHHH------------HcCCChhHHHHHHHHHHHHcCChh-------
Confidence 0 1111355678888875555444 4444444332 123345677788999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++....+|||+|+|+++|-|| ||||+|+|+ |+.+|+.|| ++
T Consensus 691 ----------~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE 760 (885)
T KOG0059|consen 691 ----------YANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEE 760 (885)
T ss_pred ----------hhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 56888999999999999999999 999999996 459999999 78
Q ss_pred hhccccEEEEEecCCeEeecCCccccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
+..+|||+++ |.+|++...|+++++-
T Consensus 761 ~EaLCtR~aI-mv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 761 AEALCTRTAI-MVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHhhhhhe-eecCeeEEecChHHHH
Confidence 9999999987 9999999999998775
No 368
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=6.4e-26 Score=200.73 Aligned_cols=234 Identities=13% Similarity=0.188 Sum_probs=169.8
Q ss_pred CcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+++.++|++..+... ..+.+++. +|+++.+||+-+|||+||||||-+.+.|+|..+++-- .+.-+..|++.++..
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~---v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~-vTADR~Rf~~idLL~ 77 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDR---VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR-VTADRMRFDDIDLLR 77 (330)
T ss_pred CcccccceEEEEecCCCceEeeee---eeeeeccceeeeeeccCCCchhHHHHHHhcccccceE-EEhhhcccccchhhc
Confidence 568999999998533 34557555 9999999999999999999999999999999874321 456677888887754
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcc-hhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
....+..++..+.++++||++..-. +-..-....+.+||..- ........-.-.+.++.++|.++|+.+..
T Consensus 78 L~Pr~RRk~ig~~isMIFQeP~sCL----DPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk---- 149 (330)
T COG4170 78 LSPRERRKLVGHNVSMIFQEPQSCL----DPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK---- 149 (330)
T ss_pred CChHHhhhhhccchhhhhcCchhhc----ChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH----
Confidence 4334444444555666666654210 00000011122232210 00000001123457788999999997531
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech-
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG- 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~- 279 (346)
+.+.+||.+|..|+=|+|+||.|+ ||||.++++ |.||++++|+
T Consensus 150 ----------DIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl 219 (330)
T COG4170 150 ----------DIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL 219 (330)
T ss_pred ----------HHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH
Confidence 257899999999999999999999 999999764 8999999994
Q ss_pred -hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHH
Q 019066 280 -DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 325 (346)
Q Consensus 280 -~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 325 (346)
.+.+.||++.| |+=|+-+++++.+++++.|+|+|+..++.++...
T Consensus 220 ~~is~W~d~i~V-lYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~PDF 265 (330)
T COG4170 220 QMISQWADKINV-LYCGQTVESAPSEELVTMPHHPYTQALIRAIPDF 265 (330)
T ss_pred HHHHHHhhheEE-EEecccccccchhHHhcCCCCchHHHHHHhCccc
Confidence 68899999986 9999999999999999999999999988865443
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=7.8e-25 Score=221.79 Aligned_cols=178 Identities=14% Similarity=0.163 Sum_probs=134.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|+++.|+++.. + ++++||.|.+|+.+|||||||||||||+|+|+|... |.+|.|.+.- .+.
T Consensus 319 ~~vl~~~~~~~~y~~~~~--l---~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g~-~v~- 386 (530)
T COG0488 319 KLVLEFENVSKGYDGGRL--L---LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVGE-TVK- 386 (530)
T ss_pred CeeEEEeccccccCCCce--e---ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeCC-ceE-
Confidence 457999999999977643 3 677999999999999999999999999999999999 9999998743 233
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
++|..|+..... .+ .++.+.+.... ....+..++..|..+++..+.
T Consensus 387 -------------igyf~Q~~~~l~---~~------~t~~d~l~~~~-------~~~~e~~~r~~L~~f~F~~~~----- 432 (530)
T COG0488 387 -------------IGYFDQHRDELD---PD------KTVLEELSEGF-------PDGDEQEVRAYLGRFGFTGED----- 432 (530)
T ss_pred -------------EEEEEehhhhcC---cc------CcHHHHHHhhC-------ccccHHHHHHHHHHcCCChHH-----
Confidence 245555542211 00 02222222111 111267788999999998753
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhc
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~ 283 (346)
..+++..||||||-|+.+|+.+ ||||+.||- .-|||+||| .++.+
T Consensus 433 -----------~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 433 -----------QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred -----------HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 4788999999999999999998 999999983 679999999 57899
Q ss_pred cccEEEEEecCCeEeec-CCcc
Q 019066 284 LTDRARIRTYLGELLGI-PPAK 304 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~-g~~~ 304 (346)
+|+++++ +.+ ++... |..+
T Consensus 502 va~~i~~-~~~-~~~~~~g~y~ 521 (530)
T COG0488 502 VATRIWL-VED-KVEEFEGGYE 521 (530)
T ss_pred hcceEEE-EcC-ceeEcCCCHH
Confidence 9999975 766 55444 4433
No 370
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=3e-25 Score=211.69 Aligned_cols=182 Identities=14% Similarity=0.228 Sum_probs=135.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||.|.|..... - +.-||++|++||++-|+|.||||||||+++|.|+|+ |++|+|++||+++.
T Consensus 322 ~lelrnvrfay~~~~F--h---vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~pV~--- 388 (546)
T COG4615 322 TLELRNVRFAYQDNAF--H---VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVS--- 388 (546)
T ss_pred ceeeeeeeeccCcccc--e---ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCccCC---
Confidence 4999999999987654 3 444999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
+-.+.|.|....-||.+..+|...+ ..+.....+.+..+|+++.+.+...
T Consensus 389 ------------~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~as~q~i~~~LqrLel~~kts------ 438 (546)
T COG4615 389 ------------AEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKASPQLIEKWLQRLELAHKTS------ 438 (546)
T ss_pred ------------CCCHHHHHHHHHHHhhhHhhhHhhh------------CCccCCChHHHHHHHHHHHHhhhhc------
Confidence 2345566666666777777766532 0111123455666777776655321
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc--CccccCCCC------------------------CceEEEEech-hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCPYLSFRD------------------------DKPVVVVTHG-DLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL--DEPts~Ld~------------------------g~tviiiTH~-~~~ 282 (346)
+.|. +-.+-.||-|||+|+|+--|| |.|.--+|+ |+||+.|||| ---
T Consensus 439 --l~d~----~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF 512 (546)
T COG4615 439 --LNDG----RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512 (546)
T ss_pred --ccCC----cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence 0110 113458999999999999998 555444432 9999999994 444
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
..|||+. .|++|++++.-
T Consensus 513 ~~ADrll-~~~~G~~~e~t 530 (546)
T COG4615 513 IHADRLL-EMRNGQLSELT 530 (546)
T ss_pred hhHHHHH-HHhcCceeecc
Confidence 5689995 59999999864
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=1.1e-25 Score=194.06 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=142.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
++++++|+..-. |--+|.++..||++=+|||||||||||+-.++|+. |-+|+|.++|+++..
T Consensus 3 l~qln~v~~~tR----------L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~------~~sGsi~~~G~~l~~-- 64 (248)
T COG4138 3 LMQLNDVAESTR----------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGSGSIQFAGQPLEA-- 64 (248)
T ss_pred eeeecccccccc----------ccccccccccceEEEEECCCCccHHHHHHHHhCCC------CCCceEEECCcchhH--
Confidence 577888876431 44489999999999999999999999999999999 578999999999851
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....+.| +-.|..|.-.-...+ ||+.+.+.. +.++....+.++.+.+++.+
T Consensus 65 -~~~~eLAr-hRAYLsQqq~p~f~mpV~~YL~L~q-----------------P~~~~a~~i~~i~~~L~l~D-------- 117 (248)
T COG4138 65 -WSATELAR-HRAYLSQQQTPPFAMPVWHYLTLHQ-----------------PDKTRTELLNDVAGALALDD-------- 117 (248)
T ss_pred -HhHhHHHH-HHHHHhhccCCcchhhhhhhhhhcC-----------------chHHHHHHHHHHHhhhcccc--------
Confidence 11111211 124544443333334 555444321 22444566788899999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc----------------CccccCCCC----------------CceEEEE
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVV 276 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tviii 276 (346)
.+.+..++|||||-|||-+|-.. |||.++||- |.+|||.
T Consensus 118 ---------KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims 188 (248)
T COG4138 118 ---------KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS 188 (248)
T ss_pred ---------hhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 46889999999999999999875 999999872 9999999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+| +...+.||++++ +..|+++..|..++++..
T Consensus 189 ~HDLNhTLrhA~~~wL-L~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 189 SHDLNHTLRHAHRAWL-LKRGKLLASGRREEVLTP 222 (248)
T ss_pred ccchhhHHHHHHHHHH-HhcCeEEeecchhhhcCh
Confidence 99 567788999986 999999999999998765
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=8.5e-24 Score=197.36 Aligned_cols=183 Identities=17% Similarity=0.104 Sum_probs=113.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh-----hhccCCCCCCCCc-----------eEEECceeCCCcccccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-----KVFENDKFASERA-----------QVTYNSSVGDGTYFLQEYT 155 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~-----gl~~~~~~~p~~G-----------~I~~~g~~i~~~~~~~~~~ 155 (346)
|+|||++|+.|..++|+|+||||||||++.+. +.+......|..+ -|.+|..++..+.. .
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~r----s 86 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPR----S 86 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCC----C
Confidence 77799999999999999999999999999663 2111100002222 24444444321000 0
Q ss_pred cCCCCccceeecccc----------------cccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCC
Q 019066 156 IPRGSNSFSLYDTRS----------------LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 156 ~~r~~i~~~~~d~~~----------------~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l 218 (346)
... ....++++.|. -..+..+++..... ++.+++.+-... . ..+++.++++.+||
T Consensus 87 ~~~-ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~------~-~~~~~~~~L~~vgL 158 (261)
T cd03271 87 NPA-TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI------P-KIARKLQTLCDVGL 158 (261)
T ss_pred cHH-HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh------h-hHHHHHHHHHHcCC
Confidence 000 00111222111 11122233332222 454554332110 1 12467789999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC----------------C
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----------------D 270 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----------------g 270 (346)
... .+++++.+|||||+||++|||+| ||||++||. |
T Consensus 159 ~~l----------------~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g 222 (261)
T cd03271 159 GYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKG 222 (261)
T ss_pred chh----------------hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 762 25888999999999999999998 999999873 8
Q ss_pred ceEEEEec-hhhhccccEEEEEe------cCCeEeecCCc
Q 019066 271 KPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPA 303 (346)
Q Consensus 271 ~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~ 303 (346)
.|+|+||| ......||+++ .| ++|+|++.|++
T Consensus 223 ~tvIiitH~~~~i~~aD~ii-~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 223 NTVVVIEHNLDVIKCADWII-DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEEeCCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCC
Confidence 99999999 23335799996 59 89999999864
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.89 E-value=6.7e-24 Score=190.62 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=98.5
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCC----CCCCCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK----FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~----~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
++++|++++| +++|+||||||||||+++|+++..+.. -.+..|++.++|+++. . ...++.+++++|++
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~v~~vfq~~ 85 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR------K-PANFAEVTLTFDNS 85 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC------C-CCceEEEEEEEEcC
Confidence 5599999999 999999999999999999999986110 0022345666665543 0 01123445555554
Q ss_pred cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCH
Q 019066 169 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 248 (346)
Q Consensus 169 ~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSg 248 (346)
..+ ++.. ..+++.++++. .+ ..++.+.+|||
T Consensus 86 ~~~--------------------~~~~---------~~~~~~~~l~~---~~-----------------~~~~~~~~LS~ 116 (197)
T cd03278 86 DGR--------------------YSII---------SQGDVSEIIEA---PG-----------------KKVQRLSLLSG 116 (197)
T ss_pred CCc--------------------eeEE---------ehhhHHHHHhC---CC-----------------ccccchhhcCH
Confidence 333 0000 12355566666 22 34677899999
Q ss_pred HHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEEEec
Q 019066 249 EKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 249 GqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
|||||++|||+| ||||++||+ +.|||+||| .....+||+++. +.
T Consensus 117 G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~-~~ 189 (197)
T cd03278 117 GEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYG-VT 189 (197)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEE-EE
Confidence 999999999973 999999884 789999999 334568999964 43
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3.9e-22 Score=198.50 Aligned_cols=196 Identities=14% Similarity=0.148 Sum_probs=148.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.++++|++..- . ++|+||++++||+++|.|--|||+|-|+++|.|..+ +.+|+|.++|+++..
T Consensus 261 ~~~l~v~~l~~~~----~------~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~~G~i~l~G~~v~~ 325 (500)
T COG1129 261 EPVLEVRNLSGGG----K------VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----ASSGEILLDGKPVRI 325 (500)
T ss_pred CcEEEEecCCCCC----c------eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CCCceEEECCEEccC
Confidence 5678999988642 1 677999999999999999999999999999999888 899999999999863
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchh-hc--c-CCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL-VI--R-RSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~-~~--~-~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
.+ ....-+..++|++.|...- +++.+ .++.+|+.++.. .. + ..+....++.+.++.+.+++...-
T Consensus 326 ~s---p~~Ai~~Gi~~v~EDRk~~-Gl~l~------~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s- 394 (500)
T COG1129 326 RS---PRDAIKAGIAYVPEDRKSE-GLVLD------MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS- 394 (500)
T ss_pred CC---HHHHHHcCCEeCCcccccC-cCcCC------CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-
Confidence 22 1112244678888886532 22111 134444444411 10 1 234455567788899999986421
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC----------------CCceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tviiiTH 278 (346)
.+....+||||-||+|.|||.| ||||.|+| +|++||+||-
T Consensus 395 ---------------~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSS 459 (500)
T COG1129 395 ---------------PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISS 459 (500)
T ss_pred ---------------ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3678899999999999999999 99999987 2999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
.++..+||||+| |++|+|+..-+.++
T Consensus 460 ElpEll~~~DRIlV-m~~Gri~~e~~~~~ 487 (500)
T COG1129 460 ELPELLGLSDRILV-MREGRIVGELDREE 487 (500)
T ss_pred ChHHHHhhCCEEEE-EECCEEEEEecccc
Confidence 689999999975 99999998765544
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=8.3e-23 Score=189.91 Aligned_cols=181 Identities=10% Similarity=-0.003 Sum_probs=108.9
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-CceEEECce-eCCCcccccccccCCCCccceeecccccccchh
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS-VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 176 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-~G~I~~~g~-~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~ 176 (346)
+.+| +++||||||||||||+++|++++. +. .|++++.+. ++.. ........+..+++++|+..... ++
T Consensus 23 ~~~~-~~~IvG~NGsGKStll~Ai~~ll~-----~~~~~~~r~~~~~~li~--~~~~~~~~~~~v~~~fq~~~~~~--~~ 92 (251)
T cd03273 23 FDPQ-FNAITGLNGSGKSNILDAICFVLG-----ITNLSTVRASNLQDLIY--KRGQAGITKASVTIVFDNSDKSQ--SP 92 (251)
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHHHHhc-----ccccccccccCHHHHhh--cCCCCCCcEEEEEEEEEcCCccc--Cc
Confidence 3455 999999999999999999999998 65 468887776 3310 00011122335566676642110 00
Q ss_pred hchHhhHH-HHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccc---ccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 177 DNINMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSV---IRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 177 qn~~~~~~-~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
....+.+. +|..++..+...... .......+++.++|+.+++...- .-.-+-+..++...+..+.++.+||+|||
T Consensus 93 ~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~ 172 (251)
T cd03273 93 IGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQR 172 (251)
T ss_pred ccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHH
Confidence 00000111 333333332211100 01233457888999999996210 00000111122222356788999999999
Q ss_pred HHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEE
Q 019066 252 YNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 289 (346)
Q Consensus 252 QRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~ 289 (346)
||++||||| ||||++||. |.|+|+||| ..+...||+++
T Consensus 173 qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 173 SLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEE
Confidence 999999965 999999873 889999999 67777899994
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.85 E-value=1.7e-21 Score=176.88 Aligned_cols=166 Identities=11% Similarity=0.087 Sum_probs=103.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEec-CCcEEEEEcCCCCCHHHHHHHHhh-hccCCCCCCCCceEEECc-eeCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNS-SVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~-~Ge~iaIvGpnGsGKSTLl~~L~g-l~~~~~~~p~~G~I~~~g-~~i~ 146 (346)
.|+++|+. +|.+.. +|+|+.. +|++++|+||||||||||+++|++ ++. +..+....+. .+..
T Consensus 5 ~i~l~nf~-~y~~~~---------~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-----~~~~~~~~~~~~~~~ 69 (213)
T cd03279 5 KLELKNFG-PFREEQ---------VIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-----KTPRYGRQENLRSVF 69 (213)
T ss_pred EEEEECCc-CcCCce---------EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-----CccccccchhHHHHh
Confidence 37888888 665432 2677654 589999999999999999999995 444 4444443320 0110
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
........+++++++..... .+.... ..+.....+.+ .++..++.+
T Consensus 70 ------~~~~~~~~v~~~f~~~~~~~-~~~r~~-------------------gl~~~~~~~~~--~l~~g~l~~------ 115 (213)
T cd03279 70 ------APGEDTAEVSFTFQLGGKKY-RVERSR-------------------GLDYDQFTRIV--LLPQGEFDR------ 115 (213)
T ss_pred ------cCCCccEEEEEEEEECCeEE-EEEEec-------------------CCCHHHHHHhh--hhhhcchHH------
Confidence 00011223445555542111 111111 11111111111 233344444
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------------CccccCCCC----------------Cc
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DK 271 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------------DEPts~Ld~----------------g~ 271 (346)
++++++.+||+||+||++||||| ||||++||. +.
T Consensus 116 -----------~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~ 184 (213)
T cd03279 116 -----------FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENR 184 (213)
T ss_pred -----------HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 46888999999999999999854 999999873 78
Q ss_pred eEEEEec--hhhhccccEEEEEecCCe
Q 019066 272 PVVVVTH--GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 272 tviiiTH--~~~~~~aDri~v~l~~G~ 296 (346)
|+|+||| +.+..+||++.+ +++|-
T Consensus 185 tii~itH~~~~~~~~~~~i~~-~~~~~ 210 (213)
T cd03279 185 MVGVISHVEELKERIPQRLEV-IKTPG 210 (213)
T ss_pred EEEEEECchHHHHhhCcEEEE-EecCC
Confidence 9999999 568888999965 88774
No 377
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=9.9e-22 Score=193.86 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=130.3
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+.|.|.+.|++|.|.++.. . +++++|-|..++.+|+|||||||||||+|+++|.+. |+.|.|.-.-...-
T Consensus 386 p~pvi~~~nv~F~y~~~~~--i---y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~H~~~ 455 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPM--I---YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHSHNKL 455 (614)
T ss_pred CCCeEEEeccccCCCCcch--h---hhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccccccc
Confidence 4678999999999987654 3 777999999999999999999999999999999999 99998875433221
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
++ +.-+.. +... +..+..+++.-.. +.....+.+..++.++||..+.
T Consensus 456 ---------------~~--y~Qh~~-----e~ld-l~~s~le~~~~~~------~~~~~~e~~r~ilgrfgLtgd~---- 502 (614)
T KOG0927|consen 456 ---------------PR--YNQHLA-----EQLD-LDKSSLEFMMPKF------PDEKELEEMRSILGRFGLTGDA---- 502 (614)
T ss_pred ---------------hh--hhhhhH-----hhcC-cchhHHHHHHHhc------cccchHHHHHHHHHHhCCCccc----
Confidence 00 000000 0000 0012222221111 1123456788999999998643
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
...+..+||+|||.||.+|+.+ ||||++||- .-++|+||| ..+.
T Consensus 503 ------------q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~ 570 (614)
T KOG0927|consen 503 ------------QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLIS 570 (614)
T ss_pred ------------cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHH
Confidence 4778899999999999999998 999999982 568999999 4788
Q ss_pred ccccEEEEEecCCeEe-ecCCc
Q 019066 283 SLTDRARIRTYLGELL-GIPPA 303 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv-~~g~~ 303 (346)
+++++|++ ..+|.+. ..|+.
T Consensus 571 qVaeEi~~-c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 571 QVAEEIWV-CENGTVTKWDGDI 591 (614)
T ss_pred HHHHHhHh-hccCceeecCccH
Confidence 99999986 6666554 34543
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=2.3e-21 Score=178.82 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=45.1
Q ss_pred cccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEE
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 289 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~ 289 (346)
.+.++.+||||||||++||||| ||||++||+ +.++|++|| ..+.++||+++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFY 231 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE
Confidence 4677899999999999999976 999999884 678888888 67788999996
Q ss_pred E
Q 019066 290 I 290 (346)
Q Consensus 290 v 290 (346)
+
T Consensus 232 ~ 232 (243)
T cd03272 232 G 232 (243)
T ss_pred E
Confidence 5
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.85 E-value=1.6e-21 Score=197.74 Aligned_cols=169 Identities=16% Similarity=0.164 Sum_probs=126.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
...|.++||+..-+++... |++.||+|++||.+.|.||||||||||+|+|+|+.+ .-+|+|.+-...
T Consensus 390 ~~~i~~~nl~l~~p~~~~l-----l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-----~g~G~I~~P~~~--- 456 (604)
T COG4178 390 DHGITLENLSLRTPDGQTL-----LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-----WGSGRISMPADS--- 456 (604)
T ss_pred cceeEEeeeeEECCCCCee-----eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-----cCCCceecCCCC---
Confidence 4679999999999887653 777999999999999999999999999999999999 777887654110
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.+-|.+| .+.+...+.++.++++.... ...++.+.++|.++||.+...++
T Consensus 457 ------------~~lflpQ-----------~PY~p~GtLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~rl-- 506 (604)
T COG4178 457 ------------ALLFLPQ-----------RPYLPQGTLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAERL-- 506 (604)
T ss_pred ------------ceEEecC-----------CCCCCCccHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHHH--
Confidence 0114444 34444445666666654321 13456788899999998744221
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 282 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~ 282 (346)
++. ++=...||+|||||+++||.| ||.|++||+ +.|+|-|+| ..+.
T Consensus 507 ------~~~---~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 507 ------DEE---DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred ------hcc---CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 111 233458999999999999998 999999984 899999999 5666
Q ss_pred ccccEE
Q 019066 283 SLTDRA 288 (346)
Q Consensus 283 ~~aDri 288 (346)
.+.++.
T Consensus 578 ~~h~~~ 583 (604)
T COG4178 578 NFHSRQ 583 (604)
T ss_pred HHHhhh
Confidence 666666
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.85 E-value=8.2e-21 Score=186.21 Aligned_cols=204 Identities=16% Similarity=0.171 Sum_probs=154.5
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC-
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG- 145 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i- 145 (346)
..+.|++++|+..-..+. .+ +++|||+|++||++||.|-.|-|-+-|+.+|+|+.+ +.+|+|.++|+++
T Consensus 254 g~~vL~V~~L~v~~~~~~--~~---v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~G~I~l~G~~v~ 323 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGV--TA---VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PASGRILLNGKDVL 323 (501)
T ss_pred CCeEEEEeeeEeecCCCC--ce---eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCCceEEECCEecc
Confidence 356899999999765442 24 666999999999999999999999999999999998 8889999999997
Q ss_pred CCcccccccccCCCCccceeeccccc---ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSL---SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~---~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
... ......+..++|+|.|.... ..+ +.+|..+..... -+...++..+.....+.+.++++.+++...
T Consensus 324 ~~~---~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~-----~~~~~~g~l~~~~i~~~a~~li~~fdVr~~ 395 (501)
T COG3845 324 GRL---SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK-----KPFSRGGFLDRRAIRKFARELIEEFDVRAP 395 (501)
T ss_pred ccC---CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccc-----cccccccccCHHHHHHHHHHHHHHcCccCC
Confidence 211 12233355778999886443 122 344443322100 001122234557788889999999988631
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 276 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviii 276 (346)
-...+...||||.+||+.+||-| .+||-|||- |++|++|
T Consensus 396 ----------------~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLi 459 (501)
T COG3845 396 ----------------SPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI 459 (501)
T ss_pred ----------------CCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 13566789999999999999999 899999982 9999999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCccc
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
|- +++..+||||+| |++|+|+...++++
T Consensus 460 S~dLDEil~lsDrIaV-i~~Gri~~~~~~~~ 489 (501)
T COG3845 460 SEDLDEILELSDRIAV-IYEGRIVGIVPPEE 489 (501)
T ss_pred ehhHHHHHHhhheeee-eeCCceeccccccc
Confidence 99 789999999986 99999999887764
No 381
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=7.3e-21 Score=188.99 Aligned_cols=188 Identities=16% Similarity=0.085 Sum_probs=139.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+..|++++|++.-+....+ . .+|.||+|+.|+.+.|.||||||||+|+|.|.|+.+ -.+|.+..-.....
T Consensus 431 Dn~i~~e~v~l~tPt~g~~-l---ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-----~~~G~l~k~~~~~~- 500 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDL-L---IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-----STGGKLTKPTDGGP- 500 (659)
T ss_pred cceEEeeeeeecCCCCCce-e---eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-----cCCCeEEecccCCC-
Confidence 4579999999998773322 3 566999999999999999999999999999999998 88998875432210
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+.+-|++|.+ .+...+.++.+.++........+...++++.+.|+.++|.+ +.+...
T Consensus 501 -----------~~lfflPQrP-----------Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~h-l~~r~g 557 (659)
T KOG0060|consen 501 -----------KDLFFLPQRP-----------YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGH-LLEREG 557 (659)
T ss_pred -----------CceEEecCCC-----------CccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhh-HHHHhC
Confidence 1122455544 33334666666666432222223344677888899998876 456667
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec-hhhhcc
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSL 284 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH-~~~~~~ 284 (346)
|++..|+-. . ...||+||+||+++||.+ ||-||+++. |+|.|-|.| ..+.++
T Consensus 558 gld~~~~~d-W----~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 558 GLDQQVDWD-W----MDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred CCCchhhcc-H----HhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 888666654 3 458999999999999998 999999873 999999999 678888
Q ss_pred ccEEEEEecC
Q 019066 285 TDRARIRTYL 294 (346)
Q Consensus 285 aDri~v~l~~ 294 (346)
-|.++ .|+.
T Consensus 633 Hd~~L-~~~g 641 (659)
T KOG0060|consen 633 HDYVL-RMDG 641 (659)
T ss_pred hhEEE-EecC
Confidence 88885 3643
No 382
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=5.8e-20 Score=196.84 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~------ 269 (346)
+..++++.+||... .+++.+.+|||||+||+.||++| ||||++||.
T Consensus 809 ~~l~~L~~vgL~~l----------------~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L 872 (943)
T PRK00349 809 RKLQTLVDVGLGYI----------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKL 872 (943)
T ss_pred HHHHHHHHCCCCcc----------------cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHH
Confidence 34677888999752 25788999999999999999998 999999873
Q ss_pred ----------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 270 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 270 ----------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|.|||+||| ......||+++ .| ++|+|++.|++++++.++. ++|..++.
T Consensus 873 ~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii-~Lgp~~G~~~G~Iv~~Gt~~el~~~~~-s~t~~~l~ 938 (943)
T PRK00349 873 LEVLHRLVDKGNTVVVIEHNLDVIKTADWII-DLGPEGGDGGGEIVATGTPEEVAKVEA-SYTGRYLK 938 (943)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCHHHHHhCcc-cHHHHHHH
Confidence 899999999 33335799996 49 7999999999999998776 56777764
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.83 E-value=1e-20 Score=186.82 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=130.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE--CceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~--~g~~i~~ 147 (346)
-+.+.|+++.|.+... ++|+.|++.+|+.+||+|+|||||||+|++|.|-.. |..-++.+ -.+++.
T Consensus 75 dvk~~sls~s~~g~~l------~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-----P~p~~~d~y~ls~e~~- 142 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVEL------IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-----PIPEHIDFYLLSREIE- 142 (614)
T ss_pred cceeeeeeeccCCcee------eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-----CCCcccchhhhcccCC-
Confidence 3899999999977543 788999999999999999999999999999999887 54443322 222211
Q ss_pred cccccccccCCCCcccee----ecccccccchhhchHhh-HHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccc
Q 019066 148 TYFLQEYTIPRGSNSFSL----YDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~----~d~~~~~~~v~qn~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
+.. .+.+..++ .....+..+ .++.... ...-.+.+..-.......+.+..+.++..+|.-+|..+..
T Consensus 143 ---ps~----~~av~~v~~~~~~e~~rle~~-~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 143 ---PSE----KQAVQAVVMETDHERKRLEYL-AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred ---Cch----HHHHHHHhhhhHHHHHHHHHH-HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 000 00001111 000001000 0110000 0000000000001111223345567778888888887643
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------Cc-eEEEEec-
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DK-PVVVVTH- 278 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~-tviiiTH- 278 (346)
.++....||||+|.|+++|||| ||||++||. .. ++++++|
T Consensus 215 ----------------~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~ 278 (614)
T KOG0927|consen 215 ----------------QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHS 278 (614)
T ss_pred ----------------HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecc
Confidence 5788889999999999999999 999999983 45 8999999
Q ss_pred -hhhhccccEEEEEecCCe-EeecCCccccccC
Q 019066 279 -GDLLSLTDRARIRTYLGE-LLGIPPAKQIFDI 309 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~-iv~~g~~~~l~~~ 309 (346)
+.+-.+|..|+ .|+.++ +...|+-++....
T Consensus 279 QDfln~vCT~Ii-~l~~kkl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 279 QDFLNGVCTNII-HLDNKKLIYYEGNYDQYVKT 310 (614)
T ss_pred hhhhhhHhhhhh-eecccceeeecCCHHHHhhH
Confidence 78889999995 599999 5667777665443
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=1e-21 Score=178.37 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=47.6
Q ss_pred hcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEE
Q 019066 238 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 288 (346)
Q Consensus 238 ~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri 288 (346)
..++++..||+|||||++||||+ ||||++||+ +.|+|++|| +.+.++|||+
T Consensus 120 ~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v 199 (212)
T cd03274 120 KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRL 199 (212)
T ss_pred ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEE
Confidence 35777889999999999999854 999999984 679999999 7788999999
Q ss_pred EEEecC
Q 019066 289 RIRTYL 294 (346)
Q Consensus 289 ~v~l~~ 294 (346)
++ |..
T Consensus 200 ~~-~~~ 204 (212)
T cd03274 200 VG-IYK 204 (212)
T ss_pred EE-EEe
Confidence 64 643
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.82 E-value=1.5e-19 Score=201.60 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=80.6
Q ss_pred HHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc--
Q 019066 185 WIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 260 (346)
Q Consensus 185 ~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-- 260 (346)
+|.+++.++.... .........+++ ++++.+||... .+++.+.+|||||+||++|||||
T Consensus 764 tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l----------------~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 764 NIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYL----------------PLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred CHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcch----------------hhcCccccCCHHHHHHHHHHHHHhh
Confidence 5566665553311 111234455566 58899999762 15888999999999999999998
Q ss_pred ----------CccccCCCC----------------CceEEEEec--hhhhccccEEEEEec------CCeEeecCCcccc
Q 019066 261 ----------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTY------LGELLGIPPAKQI 306 (346)
Q Consensus 261 ----------DEPts~Ld~----------------g~tviiiTH--~~~~~~aDri~v~l~------~G~iv~~g~~~~l 306 (346)
||||++||. |.|||+||| +.+ ++||++++ |. .|++++.|+++++
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~-L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLE-LGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEE-EccCCCCCCCEEEEeCCHHHH
Confidence 999999873 899999999 455 78999964 95 7999999999998
Q ss_pred cc
Q 019066 307 FD 308 (346)
Q Consensus 307 ~~ 308 (346)
+.
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 75
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=8.4e-20 Score=169.45 Aligned_cols=195 Identities=13% Similarity=0.014 Sum_probs=106.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee-C-CCc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-G-DGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~-i-~~~ 148 (346)
|+++|. ++|.+. .+|+..++ +++|+||||||||||+.+|.+++. +..|++...+.+ + ...
T Consensus 4 i~l~nf-~~~~~~-----------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~r~~~~~~~i~~~ 65 (247)
T cd03275 4 LELENF-KSYKGR-----------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG-----EKSSHLRSKNLKDLIYRA 65 (247)
T ss_pred EEEECc-cccCCC-----------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhC-----CCcccccccchhhhcccC
Confidence 667775 556431 23333455 999999999999999999999998 777777654321 1 100
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc--cc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR--KV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~ 226 (346)
..... ......+...++..... ..+.. ..+.++.. .... .......+.+.++++.+|+..+... .+
T Consensus 66 ~~~~~-~~~~~~v~~~f~~~~~~-~~~~~------~~~~~~~~-~~~i---ngk~~s~~~~~~~l~~~gi~~~~~~~~i~ 133 (247)
T cd03275 66 RVGKP-DSNSAYVTAVYEDDDGE-EKTFR------RIITGGSS-SYRI---NGKVVSLKEYNEELEKINILVKARNFLVF 133 (247)
T ss_pred ccccC-CCceEEEEEEEEcCCCc-EEEEE------EEEECCce-EEEE---CCEEecHHHHHHHHHHhCCCCCCCeEEEE
Confidence 00000 00000111112110000 00000 00000000 0000 0112223456688888998753211 12
Q ss_pred ceeeeeechh---hhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC----------------CceEE
Q 019066 227 NFVIFVVDGL---AVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVV 274 (346)
Q Consensus 227 ~~~~~~v~e~---~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tvi 274 (346)
+|-.+.+-+. ...++++.+||+|||||++||||+ ||||++||. |.++|
T Consensus 134 Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi 213 (247)
T cd03275 134 QGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFI 213 (247)
T ss_pred CCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEE
Confidence 2222222111 122344589999999999999976 999999873 78999
Q ss_pred EEec-hhhhccccEEEEEecCC
Q 019066 275 VVTH-GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 275 iiTH-~~~~~~aDri~v~l~~G 295 (346)
+||| ..+...||+++++.+++
T Consensus 214 ~isH~~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 214 VISLKEEFFSKADALVGVYRDQ 235 (247)
T ss_pred EEECCHHHHhhCCeEEEEEecC
Confidence 9999 55667899997644444
No 387
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.78 E-value=9e-19 Score=158.16 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=91.3
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHh----hhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 170 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~----gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~ 170 (346)
.++++.+| +++|+||||||||||+++|. |... |+.|.+..+...+.. ...+..+++++++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-----~~~~~~~~~~~~i~~-------~~~~~~v~~~f~~~~- 81 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-----PNSKGGAHDPKLIRE-------GEVRAQVKLAFENAN- 81 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-----cccccccchHHHHhC-------CCCcEEEEEEEEeCC-
Confidence 45667777 99999999999999999995 6666 777766522222210 111224456666542
Q ss_pred cccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 171 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 171 ~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
...+ +.... ++.+|+.+.. ++++.+. +++.+..||+|
T Consensus 82 ~~~~~v~r~~-----~~~~~~~~~~-----------~~~~~~~--------------------------~~~~~~~LS~G 119 (204)
T cd03240 82 GKKYTITRSL-----AILENVIFCH-----------QGESNWP--------------------------LLDMRGRCSGG 119 (204)
T ss_pred CCEEEEEEEh-----hHhhceeeec-----------hHHHHHH--------------------------HhcCccccCcc
Confidence 1111 22221 5556664321 1112221 24567899999
Q ss_pred HHHH------HHHHHhc---------CccccCCCC------------------CceEEEEec-hhhhccccEEEEEec
Q 019066 250 KQYN------QIVATTF---------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 250 qrQR------v~IArAL---------DEPts~Ld~------------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
|+|| ++||||+ |||+++||+ +.|+|++|| ......||++++ |+
T Consensus 120 ~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~-l~ 196 (204)
T cd03240 120 EKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYR-VE 196 (204)
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEE-Ee
Confidence 9996 6888888 999999873 569999999 444567999975 53
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=2.1e-18 Score=184.64 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~------ 269 (346)
+..++++.+||... .+++++.+|||||+||++||++| ||||++||.
T Consensus 807 ~~l~~L~~~gL~~l----------------~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L 870 (924)
T TIGR00630 807 RKLQTLCDVGLGYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKL 870 (924)
T ss_pred HHHHHHHHcCCCch----------------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHH
Confidence 34567788888642 25788999999999999999998 999999873
Q ss_pred ----------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCcccc
Q 019066 270 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQI 306 (346)
Q Consensus 270 ----------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l 306 (346)
|.|+|+||| ......||+++ +| ++|+|++.|+++++
T Consensus 871 ~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii-~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 871 LEVLQRLVDQGNTVVVIEHNLDVIKTADYII-DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EecCCccCCCCEEEEeCCHHHh
Confidence 899999999 33335699996 49 79999999998765
No 389
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=4.2e-19 Score=190.26 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=131.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+||+=-++||-.+||+|+|||||||||++|+|=...+ ..+|+|+++|.+.. +..+ +|..||+-|+-...
T Consensus 807 L~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p~~------q~tF-~R~~GYvqQ~DiH~ 876 (1391)
T KOG0065|consen 807 LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFPKD------QETF-ARVSGYVEQQDIHS 876 (1391)
T ss_pred hhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc---eEEeEEEECCeeCc------hhhh-ccccceeecccccC
Confidence 66699999999999999999999999999999965422 46799999998875 2222 33456665543322
Q ss_pred ccchhhchHhhHHHHHhhhhcchh--hccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGEL--VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
.. .+|++-+.+... .....+.++..+.++++++.++|++-. +.+||.. +..||..
T Consensus 877 ~~----------~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~------G~GLs~e 933 (1391)
T KOG0065|consen 877 PE----------LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLP------GSGLSTE 933 (1391)
T ss_pred cc----------cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCC------CCCCCHH
Confidence 22 255555555432 222334455668899999999998622 2334433 3469999
Q ss_pred HHHHHHHHHhc----------CccccCCCC----------------CceEEEEec---hhhhccccEEEEEe-cCCeEee
Q 019066 250 KQYNQIVATTF----------NCPYLSFRD----------------DKPVVVVTH---GDLLSLTDRARIRT-YLGELLG 299 (346)
Q Consensus 250 qrQRv~IArAL----------DEPts~Ld~----------------g~tviiiTH---~~~~~~aDri~v~l-~~G~iv~ 299 (346)
||+|+.||--| ||||||||. |.||+..-| ..+.+..|++++ | +.|+.|.
T Consensus 934 QRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL-LkrGGqtVY 1012 (1391)
T KOG0065|consen 934 QRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLL-LKRGGQTVY 1012 (1391)
T ss_pred HhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH-HhcCCeEEE
Confidence 99999999877 999999984 999999999 356777899965 6 4688998
Q ss_pred cCCcc
Q 019066 300 IPPAK 304 (346)
Q Consensus 300 ~g~~~ 304 (346)
.|+..
T Consensus 1013 ~G~lG 1017 (1391)
T KOG0065|consen 1013 FGPLG 1017 (1391)
T ss_pred ecCcc
Confidence 88754
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.76 E-value=1.4e-18 Score=168.86 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=97.6
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccc-cccchh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-LSDDAS 176 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~-~~~~v~ 176 (346)
+|..||+++++||||-|||||+++|+|.++ |++|. ..+++. +|-+|-... +.+.|.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~~~~~v--------------SyKPQyI~~~~~gtV~ 419 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----EEDLKV--------------SYKPQYISPDYDGTVE 419 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----CccceE--------------eecceeecCCCCCcHH
Confidence 456678999999999999999999999999 99997 333321 344443321 334454
Q ss_pred hchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHH
Q 019066 177 DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 256 (346)
Q Consensus 177 qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~I 256 (346)
|-+...... . + ... -.-.++++-++|++ .++++..+|||||.|||+|
T Consensus 420 ~~l~~~~~~---~--~--------~~s---~~~~ei~~pl~l~~-----------------i~e~~v~~LSGGELQRvaI 466 (591)
T COG1245 420 DLLRSAIRS---A--F--------GSS---YFKTEIVKPLNLED-----------------LLERPVDELSGGELQRVAI 466 (591)
T ss_pred HHHHHhhhh---h--c--------ccc---hhHHhhcCccchHH-----------------HHhcccccCCchhHHHHHH
Confidence 432211100 0 0 001 11234667778877 6789999999999999999
Q ss_pred HHhc---------CccccCCCC-----------------CceEEEEech--hhhccccEEEE
Q 019066 257 ATTF---------NCPYLSFRD-----------------DKPVVVVTHG--DLLSLTDRARI 290 (346)
Q Consensus 257 ArAL---------DEPts~Ld~-----------------g~tviiiTH~--~~~~~aDri~v 290 (346)
|.|| |||.+.||- ++|.++|.|+ .+-.++||++|
T Consensus 467 aa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~iv 528 (591)
T COG1245 467 AAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIV 528 (591)
T ss_pred HHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEE
Confidence 9999 999999983 8999999995 45678999954
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.3e-18 Score=169.30 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=131.7
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..|.+++.+|+|.|..+.. .. +.+++++++--..++++|+||+||||+++++.+-.. |.+|-+.+.+.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y-~~---~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~r--- 426 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEY-QW---RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHPR--- 426 (582)
T ss_pred CCCeeEEEeeeccCCCcch-hh---hhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeeccc---
Confidence 3568999999999987762 13 677999999999999999999999999999999888 89998876542
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.++++..|-...+... .. ...+-. .... +...++.+++.+..+||+.++
T Consensus 427 ------------~ri~~f~Qhhvd~l~~-------~v-~~vd~~---~~~~----pG~~~ee~r~hl~~~Gl~g~l---- 475 (582)
T KOG0062|consen 427 ------------LRIKYFAQHHVDFLDK-------NV-NAVDFM---EKSF----PGKTEEEIRRHLGSFGLSGEL---- 475 (582)
T ss_pred ------------ceecchhHhhhhHHHH-------Hh-HHHHHH---HHhC----CCCCHHHHHHHHHhcCCCchh----
Confidence 1233433322221110 00 000000 0000 112467788899999999865
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
.......||||||=||++|... ||||..||. +-.||+||| +++.
T Consensus 476 ------------a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 476 ------------ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred ------------hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence 3455789999999999999986 999999984 567999999 5789
Q ss_pred ccccEEEEEecCCeEee
Q 019066 283 SLTDRARIRTYLGELLG 299 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~ 299 (346)
.+|+.+++ .++|++..
T Consensus 544 ~~c~E~Wv-ve~g~vt~ 559 (582)
T KOG0062|consen 544 SLCKELWV-VEDGKVTP 559 (582)
T ss_pred hcCceeEE-EcCCcEEe
Confidence 99999996 99999876
No 392
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.74 E-value=9.2e-18 Score=148.58 Aligned_cols=193 Identities=13% Similarity=0.055 Sum_probs=128.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
...|++.++.|+|....+. +-|+|++++.|....+||.||||||||+++|+|-.- .-.|.|.+.|.+--.
T Consensus 11 ~~aievsgl~f~y~~~dP~-----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPI-----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGRSAFH 80 (291)
T ss_pred cceEEEeccEEecccCCce-----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCcCccc
Confidence 4469999999999877764 777999999999999999999999999999999766 666999999976421
Q ss_pred cccccccccC-CCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIP-RGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~-r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
...+. -....|.--+.....+...+-+.-...++ +.+.++.. . ...++.+++.+.+.++-
T Consensus 81 -----Dt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~---g----~dp~Rre~LI~iLDIdl------ 141 (291)
T KOG2355|consen 81 -----DTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVG---G----DDPERREKLIDILDIDL------ 141 (291)
T ss_pred -----cccccccCceeEecccccccccccccccccccccH-HHHHhhcc---C----CChhHhhhhhhheeccc------
Confidence 00000 00111111111111111111110000011 11111111 1 11145556677776653
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
.-+.+.+|.|||+||.|+..| ||-|--||- |.||++.||
T Consensus 142 -------------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF 208 (291)
T KOG2355|consen 142 -------------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF 208 (291)
T ss_pred -------------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec
Confidence 334678999999999999998 999988762 999999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCc
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
+-+...+.++++ +..|+++..-+-
T Consensus 209 DGLe~Wpthl~y-i~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 209 DGLETWPTHLVY-IKSGKLVDNLKY 232 (291)
T ss_pred cchhhcchhEEE-ecCCeeeecccc
Confidence 778889999965 999999985443
No 393
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.73 E-value=2.3e-18 Score=169.53 Aligned_cols=174 Identities=12% Similarity=0.054 Sum_probs=116.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|.++|+-.--+.+.. + ....+|+|++|-.+.|+||||||||+|+|+|.|+.+ ...|...+--
T Consensus 482 I~lenIpvItP~~~v--v---v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~P~-------- 543 (728)
T KOG0064|consen 482 IILENIPVITPAGDV--L---VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSIPR-------- 543 (728)
T ss_pred eEEecCceeccCcce--e---ecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeecCC--------
Confidence 778888887777665 3 555999999999999999999999999999999998 6555443210
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
...+-|.||. |.+...+.+|.|.++-.......+.-.++....+|+.+.|+. +.....|++
T Consensus 544 -------~~~mFYIPQR-----------PYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~d 604 (728)
T KOG0064|consen 544 -------PNNIFYIPQR-----------PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWD 604 (728)
T ss_pred -------CcceEeccCC-----------CccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChh
Confidence 1122344444 444333455555554321111111223455667788888774 334445555
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC-------------CCceEEEEec-hhhhccccE
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-------------DDKPVVVVTH-GDLLSLTDR 287 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld-------------~g~tviiiTH-~~~~~~aDr 287 (346)
-+.|=. ..||||+|||+++||.+ ||-||+.. .|.+.|-||| ..+-++-..
T Consensus 605 a~~dWk-------d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ 677 (728)
T KOG0064|consen 605 AVRDWK-------DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTH 677 (728)
T ss_pred hhccHH-------hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHH
Confidence 555544 36999999999999998 99999953 3999999999 455554444
Q ss_pred E
Q 019066 288 A 288 (346)
Q Consensus 288 i 288 (346)
+
T Consensus 678 l 678 (728)
T KOG0064|consen 678 L 678 (728)
T ss_pred H
Confidence 4
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.2e-18 Score=167.53 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=115.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
-|.+.+++..|+++.. |.+-++++..|-.+||+|+||+|||||+|+|+.-.-.. + |++-++. |.++.
T Consensus 80 Di~~~~fdLa~G~k~L------L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~-f-~veqE~~--g~~t~--- 146 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKIL------LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSG-F-HVEQEVR--GDDTE--- 146 (582)
T ss_pred ceeeeeeeeeecchhh------hcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCc-c-Cchhhee--ccchH---
Confidence 3888999999987543 77799999999999999999999999999998711000 0 2222221 11110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
..++ ......++.+-+........ .-..++...++|.-+|..++.
T Consensus 147 --------------~~~~-----------~l~~D~~~~dfl~~e~~l~~---~~~l~ei~~~~L~glGFt~em------- 191 (582)
T KOG0062|consen 147 --------------ALQS-----------VLESDTERLDFLAEEKELLA---GLTLEEIYDKILAGLGFTPEM------- 191 (582)
T ss_pred --------------HHhh-----------hhhccHHHHHHHHhhhhhhc---cchHHHHHHHHHHhCCCCHHH-------
Confidence 0000 00000011111111100000 002223333489999998864
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhccc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLT 285 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~~a 285 (346)
..++..+||||-|-|+++|||| ||||..||- +.|+|+||| .++-..|
T Consensus 192 ---------q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 192 ---------QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVC 262 (582)
T ss_pred ---------HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHH
Confidence 5788899999999999999999 999999983 789999999 4677788
Q ss_pred cEEEEEecCCeEe-ecCCccccccC
Q 019066 286 DRARIRTYLGELL-GIPPAKQIFDI 309 (346)
Q Consensus 286 Dri~v~l~~G~iv-~~g~~~~l~~~ 309 (346)
..|+ .+++-++- ..|+-+++...
T Consensus 263 tdII-H~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 263 TDII-HLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHH-HHhhhhhhhhcCcHHHHHHh
Confidence 8884 36654442 34666555443
No 395
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=1.5e-17 Score=149.47 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=89.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
++++++++.+| +.+|+||||||||||+.+|.-.+. .... ....|..+.. .. ........+..
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~-~~~r~~~~~~--~i-~~~~~~~~i~~-------- 73 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKAS-DTNRGSSLKD--LI-KDGESSAKITV-------- 73 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcc-cccccccHHH--Hh-hCCCCeEEEEE--------
Confidence 55588888888 889999999999999999975554 2211 1111221110 00 00000001112
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
.+++..+.. | ......++++.++++. .+ ..++++.+||+|||
T Consensus 74 ---~~~~~~~~~-----~----------~~~~~~~~~~~~~l~~---~~-----------------~~~~~~~~lS~G~k 115 (198)
T cd03276 74 ---TLKNQGLDA-----N----------PLCVLSQDMARSFLTS---NK-----------------AAVRDVKTLSGGER 115 (198)
T ss_pred ---EEEcCCccC-----C----------cCCHHHHHHHHHHhcc---cc-----------------ccCCcccccChhHH
Confidence 222221111 0 0012224566677766 33 34778999999999
Q ss_pred HHHHHHHhc-------------CccccCCCC------------------C-ceEEEEec--hhhhccccEEEEEecCC
Q 019066 252 YNQIVATTF-------------NCPYLSFRD------------------D-KPVVVVTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 252 QRv~IArAL-------------DEPts~Ld~------------------g-~tviiiTH--~~~~~~aDri~v~l~~G 295 (346)
||++||+|| ||||++||. + .|+|++|| +.+.++ |+|.| |..+
T Consensus 116 ~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~-~~~~ 191 (198)
T cd03276 116 SFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKV-FRMK 191 (198)
T ss_pred HHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeE-EEec
Confidence 999999875 999999873 2 48999999 567664 99976 8764
No 396
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=2.5e-17 Score=176.74 Aligned_cols=204 Identities=12% Similarity=0.137 Sum_probs=151.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+|.-+++|+.+.++||.|||||||+++|+|-.+..- -..|+|.+||.+.+. ... ++.+.|..|.-..+
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~e------~~~-~~~~aY~~e~DvH~ 201 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLKE------FVP-KKTVAYNSEQDVHF 201 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCcccc------ccc-CceEEecccccccc
Confidence 666999999999999999999999999999999887443 335799999998762 111 34556777766666
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHH-HHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
..+ |+|-+.+....- +.. .+ .....+.+ .....+.+++.+||+. +.||+||-. .....|||
T Consensus 202 p~lTVreTldFa~rck--~~~--~r-~~~~~R~e~~~~~~d~~lkilGL~~-------~~dT~VGnd-----~~RGvSGG 264 (1391)
T KOG0065|consen 202 PELTVRETLDFAARCK--GPG--SR-YDEVSRREKLAAMTDYLLKILGLDH-------CADTLVGND-----MVRGVSGG 264 (1391)
T ss_pred ceeEEeehhhHHHhcc--CCc--cc-cccccHHHHHHHHHHHHHHHhCchh-------hccceeccc-----ccccccCc
Confidence 666 777776554310 000 00 00011111 1225678899999976 678999955 46799999
Q ss_pred HHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec---hhhhccccEEEEEecCCeEeec
Q 019066 250 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYLGELLGI 300 (346)
Q Consensus 250 qrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH---~~~~~~aDri~v~l~~G~iv~~ 300 (346)
||+||++|.++ ||+|.|||. +.|.++.-| +++.++-|.|.+ |.+|+++..
T Consensus 265 erKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~l-L~eG~~iy~ 343 (1391)
T KOG0065|consen 265 ERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVIL-LSEGYQIYQ 343 (1391)
T ss_pred ccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheee-eeccceEEe
Confidence 99999999998 999999994 788888877 678889999975 999999999
Q ss_pred CCcccccc--------CCCCCChHHHHHHH
Q 019066 301 PPAKQIFD--------IPESSDPENELIIV 322 (346)
Q Consensus 301 g~~~~l~~--------~~~~~~~~~~~~~~ 322 (346)
|+.++++. .|...-+..++..+
T Consensus 344 Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~v 373 (1391)
T KOG0065|consen 344 GPRDEVLPYFEDMGFKCPPRKGTADFLTEV 373 (1391)
T ss_pred ccHHHHHHHHHhcCccCCCccCHHHHHHHh
Confidence 99887743 35666666666654
No 397
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.1e-16 Score=154.91 Aligned_cols=159 Identities=11% Similarity=0.112 Sum_probs=109.0
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..|+|-+.+|+|.|++..+. +++++|-|.--..+|||||||.||||||++|.|-+. |+.|+.+-+- .+.
T Consensus 583 ~PPvLGlH~VtFgy~gqkpL-----FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKnh-rL~ 651 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPL-----FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKNH-RLR 651 (807)
T ss_pred CCCeeecccccccCCCCCch-----hhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhccc-eee
Confidence 45789999999999877653 677999999999999999999999999999999999 9999876432 221
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
+||--|... ..+ ..+.+.-+.... | .. ..+.++..|..+||....
T Consensus 652 --------------iG~FdQh~~--E~L~~Eetp~EyLqr~-----F------Nl----pyq~ARK~LG~fGL~sHA--- 697 (807)
T KOG0066|consen 652 --------------IGWFDQHAN--EALNGEETPVEYLQRK-----F------NL----PYQEARKQLGTFGLASHA--- 697 (807)
T ss_pred --------------eechhhhhH--HhhccccCHHHHHHHh-----c------CC----ChHHHHHHhhhhhhhhcc---
Confidence 222211110 011 111111111000 0 11 124566788899997632
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHh-c--------CccccCCCC-------------CceEEEEec--hhh
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT-F--------NCPYLSFRD-------------DKPVVVVTH--GDL 281 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArA-L--------DEPts~Ld~-------------g~tviiiTH--~~~ 281 (346)
..-.+..|||||+-||++|-. | ||||.+||- .-.|||||| +.+
T Consensus 698 -------------HTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 698 -------------HTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLI 764 (807)
T ss_pred -------------ceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEeccccee
Confidence 233466899999999999975 3 999999982 667999999 344
Q ss_pred hc
Q 019066 282 LS 283 (346)
Q Consensus 282 ~~ 283 (346)
.+
T Consensus 765 ~e 766 (807)
T KOG0066|consen 765 VE 766 (807)
T ss_pred ee
Confidence 44
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.67 E-value=1.1e-16 Score=144.02 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=52.1
Q ss_pred ccCCCCCCHHHHHHHHHHHhc--------CccccCCCC-----------------CceEEEEec-hhhhccccEEEEEec
Q 019066 240 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL--------DEPts~Ld~-----------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+...+.+|+||+|+..|++++ |||++++|. +.++|++|| ..+..+||++. .|+
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~-~l~ 164 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKRE-GVE 164 (200)
T ss_pred hcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCC-CeE
Confidence 334568999999999999987 999999874 789999999 56778899996 499
Q ss_pred CCeEeecC
Q 019066 294 LGELLGIP 301 (346)
Q Consensus 294 ~G~iv~~g 301 (346)
+|+++.++
T Consensus 165 ~g~l~~~~ 172 (200)
T cd03280 165 NASMEFDP 172 (200)
T ss_pred EEEEEEec
Confidence 99998774
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.66 E-value=3.5e-16 Score=150.74 Aligned_cols=157 Identities=14% Similarity=0.181 Sum_probs=108.8
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc---CCCCCCCCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE---NDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~---~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|+|+||+|++|++++|+|+|||||||++++|+|... ...+.|++|.|.+--..+. ..++-..
T Consensus 399 lr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~---------------a~iPge~ 463 (593)
T COG2401 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS---------------ALIPGEY 463 (593)
T ss_pred eeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh---------------hccCccc
Confidence 666999999999999999999999999999999743 2234588998876432221 0111110
Q ss_pred cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCH
Q 019066 169 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 248 (346)
Q Consensus 169 ~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSg 248 (346)
.+.+...++.+++.. ...+-..+.++|.++|+.+.+ +..+..++||-
T Consensus 464 ---------Ep~f~~~tilehl~s---------~tGD~~~AveILnraGlsDAv---------------lyRr~f~ELSt 510 (593)
T COG2401 464 ---------EPEFGEVTILEHLRS---------KTGDLNAAVEILNRAGLSDAV---------------LYRRKFSELST 510 (593)
T ss_pred ---------ccccCchhHHHHHhh---------ccCchhHHHHHHHhhccchhh---------------hhhccHhhcCc
Confidence 001111122222210 111223467889999999866 56778899999
Q ss_pred HHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhcc-ccEEEEEecCCeE
Q 019066 249 EKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSL-TDRARIRTYLGEL 297 (346)
Q Consensus 249 GqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~-aDri~v~l~~G~i 297 (346)
||+.|..||+++ ||-.|.||+ |.|++++|| +....+ -|+++. +.-|+.
T Consensus 511 GQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~-vgYg~v 587 (593)
T COG2401 511 GQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLIL-VGYGKV 587 (593)
T ss_pred chHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEE-eecccc
Confidence 999999999999 888888885 999999999 455556 588854 555543
No 400
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.63 E-value=7.1e-15 Score=151.42 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCC-------
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSF------- 267 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~L------- 267 (346)
.+..+.|..|||.-- .+.++..+|||||.||+-+|.-| ||||.||
T Consensus 800 ~rkLqtL~dVGLgYi----------------~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~k 863 (935)
T COG0178 800 ARKLQTLVDVGLGYI----------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKK 863 (935)
T ss_pred HHHHHHHHHcCcceE----------------ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHH
Confidence 344566888888742 36888999999999999999998 9999995
Q ss_pred ---------CCCceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 268 ---------RDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 268 ---------d~g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
|.|-|||+|.|+ ++.+.||+| +-| ..|+||+.|+|+++.+.+ .++|..|+..
T Consensus 864 Ll~VL~rLvd~GnTViVIEHNLdVIk~AD~I-IDLGPeGG~~GG~iva~GTPeeva~~~-~S~Tg~yLk~ 931 (935)
T COG0178 864 LLEVLHRLVDKGNTVIVIEHNLDVIKTADWI-IDLGPEGGDGGGEIVASGTPEEVAKVK-ASYTGKYLKK 931 (935)
T ss_pred HHHHHHHHHhCCCEEEEEecccceEeecCEE-EEcCCCCCCCCceEEEecCHHHHHhCc-cchhHHHHHH
Confidence 459999999994 677779999 443 568999999999999876 7788888764
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.60 E-value=7.7e-16 Score=149.89 Aligned_cols=172 Identities=16% Similarity=0.167 Sum_probs=107.6
Q ss_pred eeEEEeCCCCceecccCceeeeEE-ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccc
Q 019066 75 NKILSYTPGAWIENVGGMTLSDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 153 (346)
Q Consensus 75 ~l~~~y~~~~~~~~l~~L~~isl~-i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (346)
++.-+|+.+.. +-..|- .++|.++||+|+||-||||.+++|+|-+. |.=|+- ++.+- +
T Consensus 79 e~vHRYg~NgF-------kL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~-----PNLG~~--~~pp~-------w 137 (591)
T COG1245 79 EVVHRYGVNGF-------KLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELK-----PNLGRY--EDPPS-------W 137 (591)
T ss_pred cceeeccCCce-------EEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc-----cCCCCC--CCCCC-------H
Confidence 35567865543 223332 46899999999999999999999999999 765532 12110 0
Q ss_pred cccCCCCccceeecccc--cc-----cchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 154 YTIPRGSNSFSLYDTRS--LS-----DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 154 ~~~~r~~i~~~~~d~~~--~~-----~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..+-++.-|--+|+... .. -.-.|.+.+.+..+...+..-+. ....+-...++.+.++|..
T Consensus 138 deVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk------~~de~g~~devve~l~L~n------ 205 (591)
T COG1245 138 DEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLK------KVDERGKFDEVVERLGLEN------ 205 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHH------hhhhcCcHHHHHHHhcchh------
Confidence 00000000111222110 00 11244444444433222221110 1111235677888999988
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC----------------CCceEEEEechh-
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTHGD- 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tviiiTH~~- 280 (346)
++++..++||||+.||+|||.|+ |||+|-|| ++++||+|.|++
T Consensus 206 -----------vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa 274 (591)
T COG1245 206 -----------VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274 (591)
T ss_pred -----------hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 67999999999999999999999 99999987 179999999964
Q ss_pred -hhccccEEEE
Q 019066 281 -LLSLTDRARI 290 (346)
Q Consensus 281 -~~~~aDri~v 290 (346)
+-.++|-|.|
T Consensus 275 vLD~lsD~vhI 285 (591)
T COG1245 275 VLDYLSDFVHI 285 (591)
T ss_pred HHHHhhheeEE
Confidence 4467899864
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=7.7e-15 Score=133.43 Aligned_cols=57 Identities=7% Similarity=-0.049 Sum_probs=43.5
Q ss_pred cccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC-----------------C-ceEEEEec--hhhhccc
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD-----------------D-KPVVVVTH--GDLLSLT 285 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~-----------------g-~tviiiTH--~~~~~~a 285 (346)
.+..+.+||+||||++.+|++| ||||++||+ | .|+|++|| ..+..+|
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 4567889999999999887542 999999874 3 47999999 3566667
Q ss_pred c--EEEEEecCCe
Q 019066 286 D--RARIRTYLGE 296 (346)
Q Consensus 286 D--ri~v~l~~G~ 296 (346)
| +++ ++++|+
T Consensus 200 ~~~~v~-~l~~g~ 211 (213)
T cd03277 200 EKMTVL-CVYNGP 211 (213)
T ss_pred CceEEE-EEecCc
Confidence 6 564 477775
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.56 E-value=2.8e-14 Score=159.96 Aligned_cols=96 Identities=17% Similarity=0.068 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCC------
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFR------ 268 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld------ 268 (346)
.+..+.|..+||.-- .+.++..+|||||.||+-||.-| ||||.||.
T Consensus 1677 ~~~L~~L~~vGLgYl----------------~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~ 1740 (1809)
T PRK00635 1677 QKPLQALIDNGLGYL----------------PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSA 1740 (1809)
T ss_pred HHHHHHHHHcCCCee----------------eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHH
Confidence 445677889999752 36888999999999999999988 99999975
Q ss_pred ----------CCceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 269 ----------DDKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 269 ----------~g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.|.|||+|.| .++.+.||+| |-| ..|+||+.|+|+++..++. ++|..++.
T Consensus 1741 Ll~~l~~L~~~g~tvivieH~~~~i~~aD~i-idlgp~gG~~GG~iva~Gtp~~i~~~~~-S~t~~~l~ 1807 (1809)
T PRK00635 1741 LLVQLRTLVSLGHSVIYIDHDPALLKQADYL-IEMGPGSGKTGGKILFSGPPKDISASKD-SLLKTYMC 1807 (1809)
T ss_pred HHHHHHHHHhcCCeEEEEeCCHHHHHhCCEE-EEcCCCcccCCCEEEEEeCHHHHhhCCC-CcHHHHhc
Confidence 3999999999 4566669999 454 4589999999999988754 56666653
No 404
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=6.9e-15 Score=142.57 Aligned_cols=193 Identities=15% Similarity=0.095 Sum_probs=121.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh-ccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl-~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|.++|.+.+-.+... +.+.||.|-.|..++||||||-||||||+-|+.- +. .|..=.|++..+.+....
T Consensus 265 IKiEnF~ISA~Gk~L------FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala----IPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 265 IKIENFDISAQGKLL------FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA----IPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ceeeeeeeeccccee------eeccceEEEecceecccCCCCCchHHHHHHHHhhhcc----CCCCCceEeeeeeeeecC
Confidence 899999988765443 6679999999999999999999999999998642 22 133445666555542111
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhH------HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK------LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~------~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
...-.. .+-.|.++. .+..+...+.. .++.+.+..-....+.......+.+++++|.-+|+..++
T Consensus 335 t~Ai~t-------vl~aD~kRl-~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM- 405 (807)
T KOG0066|consen 335 TSAIDT-------VLKADKKRL-ALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM- 405 (807)
T ss_pred cHHHHH-------HHHhhHHHH-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH-
Confidence 000000 000111100 00111111100 111111111000011111234567888999999998764
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--h
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--G 279 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~ 279 (346)
.+++...+|||-|-||++|||| ||||..||- .+|++||+| .
T Consensus 406 ---------------Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQg 470 (807)
T KOG0066|consen 406 ---------------QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQG 470 (807)
T ss_pred ---------------hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccc
Confidence 5788899999999999999998 999999872 789999999 4
Q ss_pred hhhccccEEEEEecCCeEe
Q 019066 280 DLLSLTDRARIRTYLGELL 298 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv 298 (346)
++-..|..|+ .|++-++-
T Consensus 471 FLD~VCtdII-HLD~qkLh 488 (807)
T KOG0066|consen 471 FLDSVCTDII-HLDNQKLH 488 (807)
T ss_pred hHHHHHHHHh-hhhhhhhh
Confidence 7888898885 47766554
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=6.5e-14 Score=132.13 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=44.1
Q ss_pred cCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEEE
Q 019066 241 SMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 291 (346)
Q Consensus 241 ~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~ 291 (346)
+....|||||+||+++|+++ |||+++||. +.|+|++|| ..+..+||++++
T Consensus 166 ~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~- 244 (276)
T cd03241 166 PLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFL- 244 (276)
T ss_pred hhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEE-
Confidence 33446999999999999742 999999874 779999999 446678999965
Q ss_pred ecCCe
Q 019066 292 TYLGE 296 (346)
Q Consensus 292 l~~G~ 296 (346)
|.+|.
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 76654
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=4.5e-14 Score=129.19 Aligned_cols=59 Identities=10% Similarity=-0.029 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHhc-----------Ccc---ccCCCC---------------CceEEEEec-hhhhccccEEEEEe
Q 019066 243 EGDSDVEKQYNQIVATTF-----------NCP---YLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT 292 (346)
Q Consensus 243 ~~~LSgGqrQRv~IArAL-----------DEP---ts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l 292 (346)
...+|.|++|+..+++++ ||| |+++|. +.++|++|| ..+.++||++.. +
T Consensus 87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~-i 165 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPN-V 165 (222)
T ss_pred hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCC-e
Confidence 347888888888888887 999 777663 689999999 678889999964 8
Q ss_pred cCCeEeecCC
Q 019066 293 YLGELLGIPP 302 (346)
Q Consensus 293 ~~G~iv~~g~ 302 (346)
++|++...+.
T Consensus 166 ~~g~~~~~~~ 175 (222)
T cd03285 166 KNLHVTALTD 175 (222)
T ss_pred EEEEEEEEEe
Confidence 9999987654
No 407
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.45 E-value=3.7e-13 Score=119.08 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHhc-------------CccccCCCC----------------CceEEEEec-hhhhccccEEEEEec
Q 019066 246 SDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 246 LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
||+||+||++|||++ |||+++||. |.|+|++|| ......+|+++. ++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~-i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIG-VL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEE-EE
Confidence 999999999999975 999999884 689999999 445567999965 54
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.43 E-value=2e-13 Score=122.91 Aligned_cols=63 Identities=8% Similarity=-0.088 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHHHhc--------CccccCCCC-----------------CceEEEEec-hhhhccccEEEEEecCCe
Q 019066 243 EGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 243 ~~~LSgGqrQRv~IArAL--------DEPts~Ld~-----------------g~tviiiTH-~~~~~~aDri~v~l~~G~ 296 (346)
.+.++.+++|...|+..+ |||++++|+ +.++|++|| ..+...|+++.. +..++
T Consensus 89 ~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~-l~~~~ 167 (202)
T cd03243 89 RSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPG-VKNLH 167 (202)
T ss_pred ceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCC-eEEEE
Confidence 346677777766665544 999999774 789999999 566667888754 88899
Q ss_pred EeecCCcccc
Q 019066 297 LLGIPPAKQI 306 (346)
Q Consensus 297 iv~~g~~~~l 306 (346)
+...++..++
T Consensus 168 ~~~~~~~~~~ 177 (202)
T cd03243 168 MEELITTGGL 177 (202)
T ss_pred EEEEecCCee
Confidence 9888765443
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.38 E-value=9e-13 Score=114.63 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHhc-------------CccccCCCC----------------CceEEEEec-hhhhccccEEEEEec
Q 019066 245 DSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+||+||+||+++|++| |||++++|. +.++|++|| ......+|+++. |+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~-l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIH-IK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEE-EE
Confidence 5999999999999988 999999874 579999999 455567999964 64
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=4.9e-12 Score=118.97 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=29.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++.++++.+| +.+|+|||||||||++.+|.-+..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~ 46 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhcc
Confidence 55588888887 789999999999999999976653
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.36 E-value=8e-13 Score=106.90 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=40.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|++++|++++|++++|+||||||||||++++. +|.+.++|.++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~ 48 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNV 48 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHH
Confidence 66699999999999999999999999999975 488999999875
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.36 E-value=1.4e-12 Score=117.48 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=29.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++|+. |++++|+||||||||||+|+|++...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 55576665 79999999999999999999998663
No 413
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.35 E-value=1.5e-12 Score=126.25 Aligned_cols=143 Identities=11% Similarity=0.137 Sum_probs=94.2
Q ss_pred ceeeeEEecCCc-----EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECceeCCCcccccccccCCCCcccee
Q 019066 92 MTLSDYDVPKTT-----SLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSL 165 (346)
Q Consensus 92 L~~isl~i~~Ge-----~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~r~~i~~~~ 165 (346)
+-+..|.|..|+ ++..+|+||.|||||+++++|.++ |++| +|-.-.. +|-+
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-----pd~~~e~p~lnV------------------Sykp 408 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-----PDEGGEIPVLNV------------------SYKP 408 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-----CCccCcccccce------------------eccc
Confidence 455888888884 789999999999999999999998 8765 3322211 2223
Q ss_pred ecccc-cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCC
Q 019066 166 YDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 244 (346)
Q Consensus 166 ~d~~~-~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~ 244 (346)
|...- +.+.|.|- +-..+++... ..+.+.+.++-+.++. ..++-..
T Consensus 409 qkispK~~~tvR~l---l~~kIr~ay~-------------~pqF~~dvmkpL~ie~-----------------i~dqevq 455 (592)
T KOG0063|consen 409 QKISPKREGTVRQL---LHTKIRDAYM-------------HPQFVNDVMKPLQIEN-----------------IIDQEVQ 455 (592)
T ss_pred cccCccccchHHHH---HHHHhHhhhc-------------CHHHHHhhhhhhhHHH-----------------HHhHHhh
Confidence 33221 12223221 1111111111 1123344455555554 3466678
Q ss_pred CCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEechhh--hccccEEEE
Q 019066 245 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHGDL--LSLTDRARI 290 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~~~--~~~aDri~v 290 (346)
+||||++||++||.+| |||.+-||. ++|-.+|.|+++ ..+|||+++
T Consensus 456 ~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrviv 529 (592)
T KOG0063|consen 456 GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 529 (592)
T ss_pred cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEE
Confidence 9999999999999999 999999883 889999999754 468999954
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.30 E-value=3.7e-12 Score=137.19 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC-----
Q 019066 206 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----- 269 (346)
Q Consensus 206 ~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~----- 269 (346)
.+++ ++|+.+||... .+++.+.+|||||+||++||+|| ||||++||+
T Consensus 467 ~~rl-~~L~~vGL~~l----------------~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~ 529 (943)
T PRK00349 467 RERL-KFLVDVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDR 529 (943)
T ss_pred HHHH-HHhhccccCCC----------------CCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHH
Confidence 3444 36788888651 15889999999999999999998 999999984
Q ss_pred -----------CceEEEEec--hhhhccccEEEEEe------cCCeEeecCCccccccCC
Q 019066 270 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -----------g~tviiiTH--~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~ 310 (346)
|.|||+|+| +.+ ..||+|+ +| ++|+|+..|+++++...+
T Consensus 530 L~~~L~~L~~~G~TVIvVeH~~~~i-~~aD~vi-~LgpgaG~~~G~iv~~g~~~e~~~~~ 587 (943)
T PRK00349 530 LIETLKHLRDLGNTLIVVEHDEDTI-RAADYIV-DIGPGAGVHGGEVVASGTPEEIMKNP 587 (943)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEE-EeccccCCCCCEEeeccCHHHHhcCh
Confidence 899999999 444 4699996 49 999999999999886653
No 415
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=5.3e-12 Score=135.77 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=61.9
Q ss_pred cccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC----------------CceEEEEec-hhhhccccEEEE
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 290 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v 290 (346)
+++++.+|||||+||++||+|| ||||++||+ |.|||+|+| ......||+++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi- 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVI- 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEE-
Confidence 5889999999999999999998 999999984 899999999 33345899996
Q ss_pred Ee------cCCeEeecCCccccccCC
Q 019066 291 RT------YLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 291 ~l------~~G~iv~~g~~~~l~~~~ 310 (346)
+| ++|+|+..|+++++...+
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~~~ 585 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILANP 585 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhcCc
Confidence 49 999999999999886543
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.27 E-value=8.9e-12 Score=117.11 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..++|+||||||||||+++|+|++. |++|+|.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEEee
Confidence 5789999999999999999999999 99999999999975
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=1.6e-11 Score=110.90 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=33.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|++|++++|++++|+|||||||||++++|+++.-
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 677999999999999999999999999999988753
No 418
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.19 E-value=1.4e-10 Score=107.90 Aligned_cols=71 Identities=11% Similarity=-0.120 Sum_probs=56.1
Q ss_pred cccccccceeeeeechhhhcccCCCCCCHHH--------HHHHHHHHhc--Cc-----cccCCC---------------C
Q 019066 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK--------QYNQIVATTF--NC-----PYLSFR---------------D 269 (346)
Q Consensus 220 ~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq--------rQRv~IArAL--DE-----Pts~Ld---------------~ 269 (346)
+++.++++++++++++.|. .+|||+ +||+++||++ +- ||+.+| .
T Consensus 110 Dei~r~a~a~~ev~~~~G~------~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~ 183 (249)
T cd01128 110 DSITRLARAYNTVVPPSGK------ILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGT 183 (249)
T ss_pred ECHHHhhhhhhhccccCCC------CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeheecCCCcccchHHHHHhcC
Confidence 6788899999999998854 579999 9999999997 22 244443 1
Q ss_pred CceEEEEech-hhhccccEEEEEecCCeE
Q 019066 270 DKPVVVVTHG-DLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 270 g~tviiiTH~-~~~~~aDri~v~l~~G~i 297 (346)
+.|.|++||. ......|.|.| |+.|++
T Consensus 184 ~~~~ivls~~la~~~~~paI~v-l~s~sr 211 (249)
T cd01128 184 GNMELVLDRRLAERRIFPAIDI-LKSGTR 211 (249)
T ss_pred CCcEEEEchHHhhCCCCCeEEE-cCCCCc
Confidence 4788999995 45667999975 999997
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.09 E-value=1.7e-10 Score=105.08 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=30.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.+|++|++.+ ++++|+||||||||||+|+++++.
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 6669999987 899999999999999999998765
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.03 E-value=9.2e-11 Score=104.23 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=36.4
Q ss_pred ccCCCCCCHHHHHHHHHHHhc--------CccccCCCC------------------CceEEEEec-hhhhccccE
Q 019066 240 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDR 287 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL--------DEPts~Ld~------------------g~tviiiTH-~~~~~~aDr 287 (346)
++..+++|+|++|...+++.. |||++++|+ +.++|++|| ..+.++||+
T Consensus 56 ~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 56 AQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred hccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 445668899988877777763 999999763 678999999 556666764
No 421
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.03 E-value=2.1e-10 Score=114.15 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=43.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~~i~ 146 (346)
|++|||+|++||+++|+||||||||||++ +|+.. |++| +|.++|+++.
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSF 70 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECC
Confidence 55599999999999999999999999999 67777 7777 7999999986
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.02 E-value=2.2e-09 Score=97.50 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEE
Q 019066 245 DSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI 290 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v 290 (346)
.||||||-+++||--| ||+.++||+ +.-+|++|| ......||+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~ 210 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIG 210 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999766 999999984 578999999 677777888754
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.01 E-value=3.8e-10 Score=120.01 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=30.2
Q ss_pred eeEEecCC-cEEEEEcCCCCCHHHHHHHHhhh-cc
Q 019066 95 SDYDVPKT-TSLLLIGPKGSGKSSLVNRISKV-FE 127 (346)
Q Consensus 95 isl~i~~G-e~iaIvGpnGsGKSTLl~~L~gl-~~ 127 (346)
+|+++.++ ++++|+||||+|||||+++|++. +-
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~ 348 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM 348 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH
Confidence 68888877 89999999999999999999998 44
No 424
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.98 E-value=2.3e-09 Score=107.16 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=43.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
++++ |.+.+|++++|+|+||+|||||+++|+++.+ ++.|.|.+.|+.-
T Consensus 149 id~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Gerg 196 (438)
T PRK07721 149 IDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGERG 196 (438)
T ss_pred hhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEecCC
Confidence 5569 9999999999999999999999999999999 9999999976553
No 425
>PRK00064 recF recombination protein F; Reviewed
Probab=98.88 E-value=3.3e-08 Score=96.91 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++++++.+| +.+|+||||||||||+.+|..+..
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~ 48 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAP 48 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCC
Confidence 66699999998 999999999999999999987653
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.87 E-value=2.6e-09 Score=104.08 Aligned_cols=158 Identities=17% Similarity=0.117 Sum_probs=91.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE--CceeCCCcccccccccCCCCccceeecccccccc-hh
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-AS 176 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~--~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~ 176 (346)
++|+++++||.||-||||-+++++|-.+ |.-|.--. +++++- +++ ....+. .....+..+. +... -+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k-----pnlg~~~~pp~w~~il-~~f-rgselq-~yftk~le~~--lk~~~kp 167 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRYDNPPDWQEIL-TYF-RGSELQ-NYFTKILEDN--LKAIIKP 167 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC-----CCCCCCCCCcchHHHh-hhh-hhHHHh-hhhhhhcccc--ccCcCCh
Confidence 5899999999999999999999999998 66553211 011110 000 000000 0000011110 0011 13
Q ss_pred hchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHH
Q 019066 177 DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 256 (346)
Q Consensus 177 qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~I 256 (346)
|.+.-.+..+..++.--+ .....++...++++.+.|.. .+++-..+||||+.||.+|
T Consensus 168 Qyvd~ipr~~k~~v~~~l------~~~~~r~~~~~~~~~~~L~~-----------------~~~re~~~lsggelqrfai 224 (592)
T KOG0063|consen 168 QYVDQIPRAVKGTVGSLL------DRKDERDNKEEVCDQLDLNN-----------------LLDREVEQLSGGELQRFAI 224 (592)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHhhcccHHHHHHHHHHhh-----------------HHHhhhhhcccchhhhhhh
Confidence 433333332222211100 01222234456677777776 5678888999999999999
Q ss_pred HHhc---------CccccCCC----------------CCceEEEEech--hhhccccEEEE
Q 019066 257 ATTF---------NCPYLSFR----------------DDKPVVVVTHG--DLLSLTDRARI 290 (346)
Q Consensus 257 ArAL---------DEPts~Ld----------------~g~tviiiTH~--~~~~~aDri~v 290 (346)
|.+- |||.+.|| ++.=+|+|.|+ .+..++|-+.+
T Consensus 225 a~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCc 285 (592)
T KOG0063|consen 225 AMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICC 285 (592)
T ss_pred hhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeE
Confidence 9997 99999987 26779999994 34456787754
No 427
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.87 E-value=6e-09 Score=103.62 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=53.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.++-+.++..|..+- ++ ++.+ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~TGi--ra---ID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETGI--KS---IDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGER 193 (432)
T ss_pred chheechhhccCCCC--EE---Eecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCC
Confidence 467778888886543 35 4445 9999999999999999999999999999998 888988776654
No 428
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.76 E-value=2.2e-08 Score=104.12 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=69.5
Q ss_pred cccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC----------------CceEEEEec-hhhhccccEEEE
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 290 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v 290 (346)
+++...+|||||.||+-+|.-| |||+.||-+ |-|+|+|.| +++.+.||+| |
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~i-I 553 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHI-I 553 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEE-E
Confidence 5888999999999999999998 999999742 999999999 6788889999 4
Q ss_pred E------ecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 291 R------TYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 291 ~------l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
- .+.|+|++.|++++++.+++. -|..++..
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~~~S-lTG~YLsg 589 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLANPES-LTGQYLSG 589 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhCCcc-hhhHhhcC
Confidence 4 567999999999999999763 45666653
No 429
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.76 E-value=8.6e-09 Score=102.71 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=55.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
.+.++.+++++.|..+. .+ ++.++ .|.+||+++|+||||||||||+++|+++.+ |+.|.|.+.|
T Consensus 137 p~~~~r~~v~~~l~TGi--~a---ID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liG 200 (450)
T PRK06002 137 PPAMTRARVETGLRTGV--RV---IDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVG 200 (450)
T ss_pred CCCeEeecceEEcCCCc--EE---eeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeecc
Confidence 45699999999997653 35 44485 999999999999999999999999999999 9999988864
No 430
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.71 E-value=2.9e-08 Score=97.44 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=61.3
Q ss_pred hhhhHHHHHHhhhhhhhhcc---CCCcEEEeeeEEEeCCCCceecccCce-----------eeeEEecCCcEEEEEcCCC
Q 019066 47 RRRDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPGAWIENVGGMT-----------LSDYDVPKTTSLLLIGPKG 112 (346)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~y~~~~~~~~l~~L~-----------~isl~i~~Ge~iaIvGpnG 112 (346)
....+|++++++..+..... ...-++|+||++.|++... + |+ |+++.|.+|++++|+||+|
T Consensus 104 ~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er~--~---Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g 178 (415)
T TIGR00767 104 PKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERL--R---LETSTEDLSTRVLDLFAPIGKGQRGLIVAPPK 178 (415)
T ss_pred cccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCccc--e---eecCccccceeeeeeEEEeCCCCEEEEECCCC
Confidence 34567888988876553322 2345999999999987554 3 65 7999999999999999999
Q ss_pred CCHHHHHHHHhhhcc
Q 019066 113 SGKSSLVNRISKVFE 127 (346)
Q Consensus 113 sGKSTLl~~L~gl~~ 127 (346)
||||||++.|...+.
T Consensus 179 ~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 179 AGKTVLLQKIAQAIT 193 (415)
T ss_pred CChhHHHHHHHHhhc
Confidence 999999999999886
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.66 E-value=2.8e-08 Score=106.16 Aligned_cols=58 Identities=5% Similarity=-0.165 Sum_probs=42.9
Q ss_pred ccCCCCCCHHHHHHHHHHHhc--------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEe
Q 019066 240 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRT 292 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL--------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l 292 (346)
.+..+++|+||+|++.|++++ |||++|+|+ +.++|++|| +.+...+++.. +
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~--v 462 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG--V 462 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC--e
Confidence 344678999999999999996 999999874 889999999 34444556553 2
Q ss_pred cCCeEee
Q 019066 293 YLGELLG 299 (346)
Q Consensus 293 ~~G~iv~ 299 (346)
.++.+..
T Consensus 463 ~~~~~~~ 469 (782)
T PRK00409 463 ENASVEF 469 (782)
T ss_pred EEEEEEE
Confidence 3444443
No 432
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.65 E-value=9.8e-08 Score=87.40 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=38.8
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh-hccCCCCCCCCceEEE
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTY 140 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g-l~~~~~~~p~~G~I~~ 140 (346)
.+|++|++.+|++++|+||||+||||+++++++ .+. ++.|....
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-----a~~G~~v~ 65 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-----AQIGSFVP 65 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HhCCCEEE
Confidence 677999999999999999999999999999999 555 77776544
No 433
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.64 E-value=2.9e-08 Score=102.34 Aligned_cols=85 Identities=11% Similarity=-0.046 Sum_probs=64.6
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------------Cccc-cCCCC
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPY-LSFRD 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------------DEPt-s~Ld~ 269 (346)
...|+.++. .....+|+++++.+++.|..+..+..|||||+||++||+|| |||| ++||.
T Consensus 434 ~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~ 512 (562)
T PHA02562 434 NHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDA 512 (562)
T ss_pred HHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccch
Confidence 344444443 23345688899999999887778899999999999999652 9998 67774
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecC-Ce
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYL-GE 296 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~-G~ 296 (346)
+.|+|+||| ......||++++ |.+ |+
T Consensus 513 ~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~~~-l~~~~~ 554 (562)
T PHA02562 513 EGTKALLSILDSLKDTNVFVISHKDHDPQKFDRHLK-MEKVGR 554 (562)
T ss_pred hHHHHHHHHHHhCCCCeEEEEECchhchhhhhcEEE-EEEECC
Confidence 789999999 455667999965 654 44
No 434
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.62 E-value=1.4e-07 Score=85.79 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=23.9
Q ss_pred eEEecCC--cEEEEEcCCCCCHHHHHHHHhh
Q 019066 96 DYDVPKT--TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 96 sl~i~~G--e~iaIvGpnGsGKSTLl~~L~g 124 (346)
++.+.++ .+++|+||||+|||||+|.|..
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 3444444 7899999999999999999984
No 435
>PRK13695 putative NTPase; Provisional
Probab=98.56 E-value=4.6e-08 Score=85.78 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCceEEEEec-hhhhccccEEEEEecCCeEeec
Q 019066 269 DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGI 300 (346)
Q Consensus 269 ~g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~ 300 (346)
.+.++|+++| ..+..++|+|. .+.+|+|.+.
T Consensus 125 ~~~~~i~v~h~~~~~~~~~~i~-~~~~~~i~~~ 156 (174)
T PRK13695 125 SEKPVIATLHRRSVHPFVQEIK-SRPGGRVYEL 156 (174)
T ss_pred CCCeEEEEECchhhHHHHHHHh-ccCCcEEEEE
Confidence 4779999999 66777899995 5999999876
No 436
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.54 E-value=4.3e-08 Score=87.11 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=40.8
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 143 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~ 143 (346)
+.+.+++|+.++|+||||||||||+++|+++++ ++.|.|.+.+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied~ 61 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIEDT 61 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECCc
Confidence 677899999999999999999999999999999 89999998764
No 437
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.52 E-value=1.2e-07 Score=94.58 Aligned_cols=176 Identities=9% Similarity=-0.014 Sum_probs=91.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc---eeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS---SVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g---~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
++++ |++.+||+++|+|+||||||||+++|++..+. .+.|.|.+.| .++.... .....-.+...++++.
T Consensus 155 ID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGerg~ev~~~~-~~~l~~~g~~~svvvv-- 226 (442)
T PRK06315 155 IDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGERGREVREFI-EGDLGEEGMKRSVIVV-- 226 (442)
T ss_pred Eecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECCCchHHHHHH-HHHHHhcCCceEEEEE--
Confidence 4447 99999999999999999999999999998850 3446676644 4442100 0000000111122210
Q ss_pred cccccchhhchHh--hHHHHHhhhhcchhhccCC--ChHHHHHHHHHHHHHcCCCc-ccccccceeeeeechhhhcccCC
Q 019066 169 RSLSDDASDNINM--IKLWIMEGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEP-SVIRKVNFVIFVVDGLAVLKSME 243 (346)
Q Consensus 169 ~~~~~~v~qn~~~--~~~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~v~e~~~~~~~~ 243 (346)
..-+|++.. .+..+...++..+..++.. ...+...++.++++.+++.. +. .+....+|
T Consensus 227 ----ats~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gep-------------p~~~gypP 289 (442)
T PRK06315 227 ----STSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEP-------------PARAGYTP 289 (442)
T ss_pred ----eCCCCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCC-------------ccccCCCC
Confidence 001343321 1112333344433333211 12455678899999999941 00 11468899
Q ss_pred CCCCHHHHHHHHHHHhcCccccCCCCC-ceEEEEec----hhhhccccEEEEEecCCeEeecC
Q 019066 244 GDSDVEKQYNQIVATTFNCPYLSFRDD-KPVVVVTH----GDLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 244 ~~LSgGqrQRv~IArALDEPts~Ld~g-~tviiiTH----~~~~~~aDri~v~l~~G~iv~~g 301 (346)
+.|| .+++-+ |=......| +|.|.+-. +.-.-++|.+. -+-+|.|+-+-
T Consensus 290 ~~fS-------~l~~ll-ERag~~~~GSITai~tVl~~gdD~~dpi~d~~~-~i~dg~ivLsr 343 (442)
T PRK06315 290 SVFS-------TLPKLL-ERSGASDKGTITAFYTVLVAGDDMNEPVADEVK-SILDGHIVLSN 343 (442)
T ss_pred chhh-------HhHHHH-HHhcCCCCcceeeeEEEEecCCCCCcccHHHhh-hhcceEEEEec
Confidence 9999 233333 000111222 34433333 22233556664 36677777653
No 438
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.44 E-value=5.8e-07 Score=81.27 Aligned_cols=24 Identities=38% Similarity=0.769 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHH-HHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLV-NRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl-~~L~gl~~ 127 (346)
.++|+|++|||||||+ +.+.|.+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999 68888775
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.39 E-value=2e-06 Score=79.10 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=31.7
Q ss_pred ecCCcEEEEEcCCCCCHHHH-HHHHhhhccCCCCCCCCceEEEC
Q 019066 99 VPKTTSLLLIGPKGSGKSSL-VNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTL-l~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
+++|++++|+|++||||||| ++++.++.+ +....+++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVS 59 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEe
Confidence 68999999999999999999 699999877 544555554
No 440
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.37 E-value=4.6e-07 Score=93.86 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEEEecC
Q 019066 244 GDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYL 294 (346)
Q Consensus 244 ~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l~~ 294 (346)
..|||||+||++||+++ |||+++||. +.+||+||| ..+...||++++ |++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~-l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFK-VEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEE-EEE
Confidence 58999999999999886 999999874 899999999 444568999964 887
Q ss_pred Ce
Q 019066 295 GE 296 (346)
Q Consensus 295 G~ 296 (346)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
No 441
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.34 E-value=4.9e-07 Score=90.11 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=33.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++ |+|.+|++++|+|+||||||||+++|+|+++
T Consensus 146 ID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 146 INGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred ccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 5559 9999999999999999999999999999998
No 442
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.33 E-value=2.4e-06 Score=85.67 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=41.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++ |.|.+|++++|+|+||+|||||+++|++..+ ++.|.+...|..
T Consensus 154 iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~r 200 (440)
T TIGR01026 154 IDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGER 200 (440)
T ss_pred eeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEeec
Confidence 5558 9999999999999999999999999999998 888777665544
No 443
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.32 E-value=5.7e-07 Score=65.51 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=30.2
Q ss_pred ceeeeEEecC-CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPK-TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~-Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++.++++.+ |.++.|.||||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4447777875 56999999999999999999987775
No 444
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=8e-07 Score=98.31 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=53.3
Q ss_pred eeeeee-chhhhcccCCCCCCHHHHHHHHHHHhc-------------------CccccCCCC----------------Cc
Q 019066 228 FVIFVV-DGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DK 271 (346)
Q Consensus 228 ~~~~~v-~e~~~~~~~~~~LSgGqrQRv~IArAL-------------------DEPts~Ld~----------------g~ 271 (346)
+.+.+| +..+..++++.+|||||++|++||+|| ||||++||+ |.
T Consensus 932 ~~~~~~~~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~ 1011 (1042)
T TIGR00618 932 GLALLVADAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSK 1011 (1042)
T ss_pred CCCeEEEeCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 344433 333355778899999999999999886 999999985 88
Q ss_pred eEEEEec--hhhhccccEEEEEecCC
Q 019066 272 PVVVVTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 272 tviiiTH--~~~~~~aDri~v~l~~G 295 (346)
+|+|||| +.+..+||+|.| ++.+
T Consensus 1012 ~i~iisH~~~~~~~~~~~i~v-~~~~ 1036 (1042)
T TIGR00618 1012 MIGIISHVPEFRERIPHRILV-KKTN 1036 (1042)
T ss_pred EEEEEeCcHHHHHhhCCEEEE-EECC
Confidence 9999999 578899999965 7543
No 445
>PRK08149 ATP synthase SpaL; Validated
Probab=98.30 E-value=4.9e-07 Score=89.97 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=44.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC---ceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~---G~I~~~g~~i~ 146 (346)
++++ |++.+||+++|+|+||||||||+++|++... ++. |.|..+|.++.
T Consensus 142 id~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 142 IDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVT 193 (428)
T ss_pred Eeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHH
Confidence 5669 9999999999999999999999999999988 665 88988888864
No 446
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.30 E-value=7e-07 Score=88.98 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=54.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
+.++.+.++..|..+. .+ ++++ |+|.+||+++|+|+||+|||||+++|++... ++.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~tGi--~a---ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTGI--RA---IDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-----ADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCCc--ee---eeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-----CCEEEEEEECCC
Confidence 3588888888886543 35 5559 9999999999999999999999999999998 888888776654
No 447
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.29 E-value=2.6e-06 Score=76.33 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=29.9
Q ss_pred ccCCCCCCHHHHHHHHHHHhc------------CccccCCCC----------------CceEEEEec
Q 019066 240 KSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----------------g~tviiiTH 278 (346)
.-+...+|.|++|.+.|+.+| |||-++|.+ +.-+|++||
T Consensus 231 ~~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 231 EIPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp EGGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred EEeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 455678899999998888766 999999763 578999999
No 448
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.29 E-value=7.9e-07 Score=78.51 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+||+++|+|+||||||||+++|++++. + +.++|.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-----~----~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-----A----KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-----C----EEECCcccC
Confidence 589999999999999999999999998 6 578887653
No 449
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.26 E-value=4.5e-06 Score=73.78 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=28.8
Q ss_pred cccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 88 NVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 88 ~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++|+- .|++++- ++.|+|+||+|||||+..|+-...
T Consensus 25 a~r~l~~-~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 25 AFRHLEE-RLEFRAP-ITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred HHHhhhh-hccccCc-eEEEEcCCCccHHHHHHHHHhhcc
Confidence 5555543 4566554 899999999999999999975554
No 450
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.25 E-value=4.4e-06 Score=73.39 Aligned_cols=54 Identities=7% Similarity=-0.027 Sum_probs=38.9
Q ss_pred cccCCCCCCHHHHH-----HHHHHHhc----------CccccCCC---C----------------CceEEEEec--hh--
Q 019066 239 LKSMEGDSDVEKQY-----NQIVATTF----------NCPYLSFR---D----------------DKPVVVVTH--GD-- 280 (346)
Q Consensus 239 ~~~~~~~LSgGqrQ-----Rv~IArAL----------DEPts~Ld---~----------------g~tviiiTH--~~-- 280 (346)
.+..+..+|+|++| +..+.+++ |||++.++ . |.|+|+++| ..
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 35567789999888 34444332 99998876 1 889999999 22
Q ss_pred -------hhccccEEEEEec
Q 019066 281 -------LLSLTDRARIRTY 293 (346)
Q Consensus 281 -------~~~~aDri~v~l~ 293 (346)
+..+||.++. |+
T Consensus 145 ~~~~~~~~~~~aD~ii~-l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIR-LR 163 (187)
T ss_pred cccCcCceeEeeeEEEE-EE
Confidence 6788999954 65
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.25 E-value=7.4e-06 Score=69.33 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
+++|.||+|+|||||++.+++... +..+.|.+...+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEECC
Confidence 478999999999999999999987 666777765443
No 452
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.24 E-value=7.5e-07 Score=98.81 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=57.0
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEE
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVV 276 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviii 276 (346)
+..|+...|...+..+.++..|||||+||++||+++ |||+++||. +.++|||
T Consensus 1069 ~~~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~ 1148 (1179)
T TIGR02168 1069 LEAGIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVI 1148 (1179)
T ss_pred cccCceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEE
Confidence 568888888888888899999999999999999984 999999984 6789999
Q ss_pred ec-hhhhccccEEEE
Q 019066 277 TH-GDLLSLTDRARI 290 (346)
Q Consensus 277 TH-~~~~~~aDri~v 290 (346)
|| .....+||+++.
T Consensus 1149 sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1149 THNKGTMEVADQLYG 1163 (1179)
T ss_pred EcChhHHHHhhhHee
Confidence 99 445567999964
No 453
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.24 E-value=8.9e-07 Score=79.36 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 454
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.23 E-value=1e-06 Score=89.56 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=54.4
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
+.|++..|+... + ++++++.+..|+.++|+||||||||||++.|.|+++ |.+|++.++...+
T Consensus 187 ~~d~~~v~Gq~~---~---~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-----p~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQ---G---KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-----DLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHH---H---HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCCcEEEecchh
Confidence 458888887543 4 555999999999999999999999999999999999 9999999987665
No 455
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.23 E-value=1.9e-06 Score=83.13 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=41.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+.+-|.+
T Consensus 60 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer 106 (326)
T cd01136 60 IDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGER 106 (326)
T ss_pred Eeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecC
Confidence 5559 9999999999999999999999999999998 888877765543
No 456
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=7.9e-07 Score=100.39 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=55.2
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHH------HHHHHHhc---------CccccCCCC-----
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY------NQIVATTF---------NCPYLSFRD----- 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQ------Rv~IArAL---------DEPts~Ld~----- 269 (346)
..+++..+...++..+|.| +|+++.+ +.|||||+| |++||||+ ||||++||.
T Consensus 1172 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~ 1243 (1311)
T TIGR00606 1172 VSASDKRRNYNYRVVMLKG-DTALDMR-------GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIES 1243 (1311)
T ss_pred HHHHHHcCchHHHhccCCC-CeecCCC-------CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHH
Confidence 3567777888888888888 8888765 379999999 99999999 999999873
Q ss_pred ----------------CceEEEEec--hhhhccc
Q 019066 270 ----------------DKPVVVVTH--GDLLSLT 285 (346)
Q Consensus 270 ----------------g~tviiiTH--~~~~~~a 285 (346)
|.|+|+||| .++..+|
T Consensus 1244 l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1244 LAHALVEIIKSRSQQRNFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred HHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHh
Confidence 468999999 4555544
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.19 E-value=2e-06 Score=76.29 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|++++|+||||||||||+++|++.+. + .+.+.+..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----T---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----C---eEEEcCEECC
Confidence 78999999999999999999999886 5 4667666554
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.18 E-value=1.2e-06 Score=79.04 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=26.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++++|+||||||||||++.|++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999987
No 459
>PRK10869 recombination and repair protein; Provisional
Probab=98.17 E-value=1.9e-06 Score=89.00 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEEEecC
Q 019066 244 GDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYL 294 (346)
Q Consensus 244 ~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l~~ 294 (346)
..|||||+||++||+++ |||+++||. +.+||+||| ..+..+||+.++ +.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~-v~k 507 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFF-VSK 507 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE-Eec
Confidence 36899999999999997 999999873 789999999 556688999964 766
Q ss_pred Ce
Q 019066 295 GE 296 (346)
Q Consensus 295 G~ 296 (346)
+.
T Consensus 508 ~~ 509 (553)
T PRK10869 508 ET 509 (553)
T ss_pred cc
Confidence 44
No 460
>PLN02796 D-glycerate 3-kinase
Probab=98.13 E-value=1.1e-06 Score=85.07 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=42.4
Q ss_pred ceeeeEEe---cCCcE-----EEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDV---PKTTS-----LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i---~~Ge~-----iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++++.+ ++|+. +||+|++|||||||++.|.+++.... ...|.|.+||..+.
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdfYLt 142 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCcccc
Confidence 55588887 67776 99999999999999999999998210 13588999987654
No 461
>PRK01156 chromosome segregation protein; Provisional
Probab=98.11 E-value=8.9e-06 Score=88.73 Aligned_cols=86 Identities=15% Similarity=0.057 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHH------Hhc---------CccccCCCC-
Q 019066 206 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD- 269 (346)
Q Consensus 206 ~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IA------rAL---------DEPts~Ld~- 269 (346)
...+.+++..+++...-....+.+...|-.. .....+..|||||++|++|| |++ ||||++||+
T Consensus 763 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~ 841 (895)
T PRK01156 763 TSLTRKYLFEFNLDFDDIDVDQDFNITVSRG-GMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDED 841 (895)
T ss_pred HHHHHHHHHHhCCCccceeecCCeeEEEEeC-CccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHH
Confidence 3345567777777521111222233233222 33567889999999999765 776 999999984
Q ss_pred -----------------C-ceEEEEec-hhhhccccEEEEEec
Q 019066 270 -----------------D-KPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 270 -----------------g-~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+ .|+|+||| ......||+++. +.
T Consensus 842 ~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~-~~ 883 (895)
T PRK01156 842 RRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYE-VK 883 (895)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEE-EE
Confidence 2 37999999 445578999965 54
No 462
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.11 E-value=3e-06 Score=94.21 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=57.5
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEE
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVV 276 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviii 276 (346)
+..|++..|.+.+...+++..||||||++++||++| |||+++||. +.++|+|
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~ 1133 (1164)
T TIGR02169 1054 FAGGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVV 1133 (1164)
T ss_pred ccCCeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 456899999888887888999999999999999988 999999985 6789999
Q ss_pred ec-hhhhccccEEEE
Q 019066 277 TH-GDLLSLTDRARI 290 (346)
Q Consensus 277 TH-~~~~~~aDri~v 290 (346)
|| ..+..+||+++.
T Consensus 1134 t~~~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1134 SLRSPMIEYADRAIG 1148 (1164)
T ss_pred ECcHHHHHhcceeEe
Confidence 99 556688999964
No 463
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.09 E-value=3.1e-06 Score=84.22 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=42.8
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+|++.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|...
T Consensus 133 ~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer~ 178 (418)
T TIGR03498 133 TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGERG 178 (418)
T ss_pred eeccccCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeeec
Confidence 699999999999999999999999999999998 8999998888654
No 464
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.09 E-value=2.7e-06 Score=77.99 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=30.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 138 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I 138 (346)
.+..+++|.||||||||||+++|.++++ +..|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCc
Confidence 4567999999999999999999999999 888883
No 465
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.09 E-value=9.9e-06 Score=87.42 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=26.7
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+||.+...-.+.|+|++|||||||++.|+..+.
T Consensus 449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~ 481 (818)
T PRK13830 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFR 481 (818)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 455554444799999999999999999988765
No 466
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.08 E-value=1e-05 Score=73.94 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=32.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-+|++|++++|++++|.||||+||||+++.++...
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 66799999999999999999999999999998864
No 467
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.06 E-value=2.4e-06 Score=82.03 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=38.0
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
+++.++.|+.++|+||+|||||||+++|+++++ +..|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEc
Confidence 457788999999999999999999999999998 888888875
No 468
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.06 E-value=4.5e-06 Score=83.08 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=43.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|+..
T Consensus 128 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ger~ 175 (413)
T TIGR03497 128 IDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGERG 175 (413)
T ss_pred eeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccch
Confidence 5559 9999999999999999999999999999998 8999888888654
No 469
>PRK03918 chromosome segregation protein; Provisional
Probab=98.05 E-value=4.8e-06 Score=90.45 Aligned_cols=63 Identities=14% Similarity=0.002 Sum_probs=46.6
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHH------Hhc---------CccccCCCC----------------CceEEEEe
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IA------rAL---------DEPts~Ld~----------------g~tviiiT 277 (346)
+...+-..| .+.++..|||||+|+++|| +++ ||||++||. +.++|+||
T Consensus 773 ~~i~~l~~g-~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiit 851 (880)
T PRK03918 773 VKLFVVYQG-KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVS 851 (880)
T ss_pred eEEEEeCCC-CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 333333333 3678899999999965554 454 999999984 57899999
Q ss_pred c-hhhhccccEEEEEec
Q 019066 278 H-GDLLSLTDRARIRTY 293 (346)
Q Consensus 278 H-~~~~~~aDri~v~l~ 293 (346)
| ..+...||++++ |+
T Consensus 852 h~~~~~~~~d~~~~-l~ 867 (880)
T PRK03918 852 HDEELKDAADYVIR-VS 867 (880)
T ss_pred CCHHHHHhCCeEEE-EE
Confidence 9 556678999965 76
No 470
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=4.4e-06 Score=81.80 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=42.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~~ 232 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDSK 232 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCCC
Confidence 444666788999999999999999999999999999 999999998643
No 471
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.05 E-value=5.1e-06 Score=83.17 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=42.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.|.+.|+.
T Consensus 154 ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-----~d~~vi~~iGer 200 (441)
T PRK09099 154 VDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-----CDVNVIALIGER 200 (441)
T ss_pred ccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccC
Confidence 5559 9999999999999999999999999999998 888988888754
No 472
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.05 E-value=4.8e-06 Score=82.80 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=50.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.++-+.++..|..+ +.+ ++.+ |.+.+|++++|+|+||+|||||+++|+++.. ++.+.+...|+.
T Consensus 111 ~~~R~~~~~~~~tG--i~~---id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGer 174 (411)
T TIGR03496 111 PLKRAPIDEPLDVG--VRA---INGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGER 174 (411)
T ss_pred HHhccCcceEeeee--EEe---ecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEecC
Confidence 35556666677544 335 4448 9999999999999999999999999999998 887776655554
No 473
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.05 E-value=2.8e-05 Score=68.62 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|++|+|||||++.|.+-
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 35999999999999999999983
No 474
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.03 E-value=4.5e-06 Score=83.42 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=42.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++ |.+.+|++++|+|+||||||||+++|++... ++.|.+.+.|..
T Consensus 136 id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~~ 182 (422)
T TIGR02546 136 IDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-----ADVNVIALIGER 182 (422)
T ss_pred ehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEccC
Confidence 5559 9999999999999999999999999999998 898888876544
No 475
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.00 E-value=9.1e-06 Score=71.61 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++++++.+| +++|+||||+||||++.+|.-++-
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 56688888888 999999999999999999987775
No 476
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.99 E-value=5.2e-06 Score=82.96 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=41.8
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC---ceEEECceeCC
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 146 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~---G~I~~~g~~i~ 146 (346)
|+|.+|++++|+|+||||||||+++|+++.+ ++. |.|.+.|.++.
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-----~d~iv~g~Igerg~ev~ 217 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-----ADVIVVGLIGERGREVK 217 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCC-----CCEEEEEEEEECCeEHH
Confidence 9999999999999999999999999999998 765 89999998874
No 477
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.99 E-value=8.1e-06 Score=79.94 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=26.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++..++|+||+||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999985
No 478
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.99 E-value=7.6e-06 Score=71.77 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|++++|+||||||||||++.|+..+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999886
No 479
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.96 E-value=2e-05 Score=77.89 Aligned_cols=132 Identities=13% Similarity=0.108 Sum_probs=84.6
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHH-hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccch
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 175 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L-~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v 175 (346)
+-|++| ++.|+|.+=-||||||++| .|.|. +. |-.|+=+ +.-+.....
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYn-Hi--pGDGRE~------------------------VVT~~~avk--- 288 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYN-HI--PGDGREF------------------------VVTDPDAVK--- 288 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccC-CC--CCCCceE------------------------EEECCCceE---
Confidence 678999 9999999999999999999 57776 22 4333222 111110000
Q ss_pred hhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHH
Q 019066 176 SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 255 (346)
Q Consensus 176 ~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~ 255 (346)
+ +.+.- .....+++.+++..+|.|.+|- ... -.+=||-.-|-..
T Consensus 289 ----------i---------------rAEDG----R~V~~vDISpFI~~LP~g~dT~-~Fs------T~~ASGSTSqAAn 332 (448)
T PF09818_consen 289 ----------I---------------RAEDG----RSVEGVDISPFINNLPGGKDTT-CFS------TENASGSTSQAAN 332 (448)
T ss_pred ----------E---------------EecCC----ceEeCccchHHHhhCCCCCCCC-ccc------ccCCCchHHHHHH
Confidence 0 00000 0123355566666667776665 322 2366888888888
Q ss_pred HHHhc---------CccccCC---------------C-----------------CCceEEEEec--hhhhccccEEEEEe
Q 019066 256 VATTF---------NCPYLSF---------------R-----------------DDKPVVVVTH--GDLLSLTDRARIRT 292 (346)
Q Consensus 256 IArAL---------DEPts~L---------------d-----------------~g~tviiiTH--~~~~~~aDri~v~l 292 (346)
|..|| ||-||+- + .|.++|+|+- .+....||+|++ |
T Consensus 333 I~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~-M 411 (448)
T PF09818_consen 333 IMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIM-M 411 (448)
T ss_pred HHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEE-e
Confidence 98888 8888880 0 1888888887 567778999964 8
Q ss_pred cCCe
Q 019066 293 YLGE 296 (346)
Q Consensus 293 ~~G~ 296 (346)
++=+
T Consensus 412 d~Y~ 415 (448)
T PF09818_consen 412 DEYR 415 (448)
T ss_pred cCcc
Confidence 7644
No 480
>PRK15494 era GTPase Era; Provisional
Probab=97.95 E-value=5.6e-06 Score=80.55 Aligned_cols=53 Identities=26% Similarity=0.238 Sum_probs=45.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCc-------EEEEEcCCCCCHHHHHHHHhhh
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT-------SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge-------~iaIvGpnGsGKSTLl~~L~gl 125 (346)
..-+++++++++|+.... + ++.++|++++|+ .++|+|.+|+|||||+|.|.|-
T Consensus 16 ~g~~~~~~~~~~~~~~~~--~---~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 16 KGDTEALAAAVREDASTG--S---TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred CCccccccccccCCCCcc--c---ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 345899999999985544 4 666999999999 9999999999999999999875
No 481
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.95 E-value=2.4e-07 Score=94.25 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=30.4
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHH--hhhccCCCCCCCCceEEECc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L--~gl~~~~~~~p~~G~I~~~g 142 (346)
=+++|.++.|.|++|||||||..-. .|+.+ ..+.-+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-----~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-----FDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEE
Confidence 4789999999999999999999876 45554 3445555543
No 482
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.95 E-value=8.2e-06 Score=81.44 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=43.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++ +++.+|++++|+|+||+|||||+++|++... ++.+.|...|....
T Consensus 148 id~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-----~~v~vi~~iGergr 196 (434)
T PRK08472 148 IDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-----APIKVVALIGERGR 196 (434)
T ss_pred hhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-----CCEEEEEeeCccch
Confidence 5559 9999999999999999999999999999887 77888887776643
No 483
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.94 E-value=9.8e-06 Score=89.66 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=43.6
Q ss_pred ccCCCCCCHHHHHHHHHHHhc-----------------CccccCCCC----------------CceEEEEec--hhhhcc
Q 019066 240 KSMEGDSDVEKQYNQIVATTF-----------------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL-----------------DEPts~Ld~----------------g~tviiiTH--~~~~~~ 284 (346)
.+++.+|||||+++++||+|| ||||++||+ |+||+|||| .+..++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 578899999999999999996 999999985 899999999 456677
Q ss_pred ccEEEE
Q 019066 285 TDRARI 290 (346)
Q Consensus 285 aDri~v 290 (346)
..+|.|
T Consensus 1024 ~~qi~V 1029 (1047)
T PRK10246 1024 PVQIKV 1029 (1047)
T ss_pred cceEEE
Confidence 778854
No 484
>PRK05922 type III secretion system ATPase; Validated
Probab=97.94 E-value=1.2e-05 Score=80.34 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=40.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++.+ |.+.+|+.++|+|+||+|||||+++|++..+ ++.|.+..-|..
T Consensus 148 ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGer 194 (434)
T PRK05922 148 IDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGER 194 (434)
T ss_pred ecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCC
Confidence 3335 9999999999999999999999999999988 888888665543
No 485
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.93 E-value=7.8e-06 Score=81.87 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=32.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++ |.|.+|++++|+|+||+|||||+++|+|+..
T Consensus 159 ID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 159 INGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred ecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4449 9999999999999999999999999999887
No 486
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.93 E-value=7.9e-06 Score=71.92 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=28.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
|+++++..+++++ +|+|++|||||||++.+.+
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 5668999888755 9999999999999999987
No 487
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.91 E-value=9.8e-06 Score=78.13 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=38.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++|++++|+|||||||||++..|++.+. +..++|.+.+.|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCcc
Confidence 5789999999999999999999999998 88889999887763
No 488
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.90 E-value=8.6e-06 Score=74.45 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||.|+||||||||++.|.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999997
No 489
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.89 E-value=6.8e-06 Score=83.10 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=35.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCce
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 137 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~ 137 (346)
+++.++.+.+|.+++|||||||||||++..|++.+. ...|.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-----~~~G~ 286 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-----MRHGA 286 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-----HhcCC
Confidence 444788889999999999999999999999999987 66653
No 490
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.89 E-value=1e-05 Score=76.99 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.++||.||||||||||+++|.+++... |.+|.|.+-+.|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~---~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRW---PEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhc---CCCCceEEEecc
Confidence 599999999999999999999998621 456787765544
No 491
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.86 E-value=1.8e-05 Score=70.95 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=36.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEECceeCC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 146 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~g~~i~ 146 (346)
++|.+++|+|+||||||||.+.|.+.+. + ..|.++++|.++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~-----~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH-----ELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCCEEEEcCEeHH
Confidence 6789999999999999999999999775 3 3468999987764
No 492
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.86 E-value=1.8e-05 Score=68.25 Aligned_cols=40 Identities=13% Similarity=0.332 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc----eEEECce
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERA----QVTYNSS 143 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G----~I~~~g~ 143 (346)
-.++|+|++|||||||++.|.+..... ..|+.| .+.++|.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~~i~~~~~ 58 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIKTVQSDGF 58 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceEEEEECCE
Confidence 469999999999999999999963211 116777 5555443
No 493
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=2.2e-05 Score=88.83 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=42.1
Q ss_pred EEEeeeEEEeCC--CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh----hhccCCCCCCC-CceEEECce
Q 019066 71 TDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASE-RAQVTYNSS 143 (346)
Q Consensus 71 l~~~~l~~~y~~--~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~----gl~~~~~~~p~-~G~I~~~g~ 143 (346)
|.++|+. +|++ ... .-|+|. +| +++|+|||||||||++.+|. |..+ |. .|.+++.+.
T Consensus 6 l~i~g~r-Sf~~~~~~~-------~~I~F~--~~-~~~I~G~NGaGKTTil~ai~~al~G~~~-----~~~~g~~~i~~~ 69 (1311)
T TIGR00606 6 MSILGVR-SFGIEDKDK-------QIIDFF--SP-LTILVGPNGAGKTTIIECLKYICTGDFP-----PGTKGNTFVHDP 69 (1311)
T ss_pred eeeecee-cCCCccccc-------eeeecc--cc-eEEEECCCCCCHHHHHHHHHHHhcCCCC-----CCCCCceEecCC
Confidence 6667654 5753 111 115554 55 99999999999999999994 8887 64 688888765
Q ss_pred eC
Q 019066 144 VG 145 (346)
Q Consensus 144 ~i 145 (346)
++
T Consensus 70 ~~ 71 (1311)
T TIGR00606 70 KV 71 (1311)
T ss_pred Cc
Confidence 54
No 494
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.85 E-value=4.4e-05 Score=85.48 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=37.1
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 143 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~ 143 (346)
++++..++++++|+|++|+|||||++.+.+-+.. ...|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~----~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR----QFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh----cCCeEEEeecc
Confidence 5678889999999999999999999999665541 45799988763
No 495
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.84 E-value=1.2e-05 Score=70.46 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999875
No 496
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.84 E-value=2.1e-05 Score=89.01 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=42.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
+.+-.|++.+| +++|+|+|||||||++++|++++. |..|.+.|++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-----~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-----CCCCeEEECCcc
Confidence 55578999887 999999999999999999999998 888999998765
No 497
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.81 E-value=1.8e-05 Score=78.89 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=32.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.+ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 153 ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 153 INAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 4447 9999999999999999999999999999877
No 498
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.79 E-value=2e-05 Score=74.36 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
+++|+|+||||||||++.|.++++ +..|.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-----~~~~~vi~~ 33 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-----SDLVTVICL 33 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-----CCceEEEEC
Confidence 589999999999999999999998 776655543
No 499
>PRK09183 transposase/IS protein; Provisional
Probab=97.79 E-value=1e-05 Score=75.85 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=40.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.+++..+.+..+.....+..|.+++| +++|+.+.|+||+|+|||+|+++|+....
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 355666666644321112233566999 99999999999999999999999976654
No 500
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.78 E-value=1.8e-05 Score=70.64 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+||||||||||.++|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999884
Done!