Query 019066
Match_columns 346
No_of_seqs 313 out of 2407
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 6.5E-47 2.2E-51 366.7 18.9 216 67-321 21-266 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 2.6E-46 8.7E-51 364.5 16.9 205 70-320 3-235 (381)
3 3nh6_A ATP-binding cassette SU 100.0 5.8E-47 2E-51 360.1 11.1 220 50-309 25-278 (306)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 3.7E-46 1.3E-50 361.0 16.6 209 70-320 4-240 (359)
5 3gfo_A Cobalt import ATP-bindi 100.0 3.2E-45 1.1E-49 343.5 13.9 203 68-310 5-235 (275)
6 2it1_A 362AA long hypothetical 100.0 1.1E-44 3.6E-49 351.7 17.6 204 70-320 3-235 (362)
7 1z47_A CYSA, putative ABC-tran 100.0 1E-44 3.5E-49 350.8 17.2 206 68-320 12-247 (355)
8 1b0u_A Histidine permease; ABC 100.0 6.7E-45 2.3E-49 339.2 13.7 211 69-319 5-253 (262)
9 2yyz_A Sugar ABC transporter, 100.0 1.1E-44 3.7E-49 351.3 15.2 205 70-320 3-235 (359)
10 2olj_A Amino acid ABC transpor 100.0 8.7E-45 3E-49 338.5 13.8 207 69-317 23-257 (263)
11 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-44 5.9E-49 349.5 15.9 212 70-320 3-242 (353)
12 1g29_1 MALK, maltose transport 100.0 2.1E-44 7.3E-49 351.0 16.3 210 70-320 3-241 (372)
13 1v43_A Sugar-binding transport 100.0 1.9E-44 6.7E-49 351.0 14.7 205 69-320 10-243 (372)
14 3d31_A Sulfate/molybdate ABC t 100.0 5.5E-44 1.9E-48 345.1 16.8 201 70-321 1-230 (348)
15 3tif_A Uncharacterized ABC tra 100.0 7.1E-44 2.4E-48 327.2 15.8 202 70-307 1-233 (235)
16 4f4c_A Multidrug resistance pr 100.0 9.6E-45 3.3E-49 402.1 11.4 226 48-310 1046-1306(1321)
17 1g6h_A High-affinity branched- 100.0 9.5E-44 3.3E-48 330.4 13.6 196 68-305 5-239 (257)
18 2onk_A Molybdate/tungstate ABC 100.0 7.6E-43 2.6E-47 321.3 19.2 203 70-324 1-231 (240)
19 4g1u_C Hemin import ATP-bindin 100.0 1E-43 3.5E-48 331.8 13.3 195 68-308 9-237 (266)
20 2ff7_A Alpha-hemolysin translo 100.0 7.4E-44 2.5E-48 329.4 11.7 205 70-314 7-238 (247)
21 1vpl_A ABC transporter, ATP-bi 100.0 9.8E-43 3.3E-47 323.5 17.8 196 68-309 13-236 (256)
22 1mv5_A LMRA, multidrug resista 100.0 2.8E-43 9.5E-48 324.6 13.7 200 70-308 1-226 (243)
23 2pcj_A ABC transporter, lipopr 100.0 4.6E-43 1.6E-47 319.5 15.0 192 69-302 3-222 (224)
24 3b5x_A Lipid A export ATP-bind 100.0 1.3E-43 4.4E-48 364.5 11.8 224 48-309 313-568 (582)
25 4f4c_A Multidrug resistance pr 100.0 2.9E-44 1E-48 398.2 7.5 226 48-310 384-643 (1321)
26 1ji0_A ABC transporter; ATP bi 100.0 3.4E-43 1.1E-47 323.6 12.7 197 68-308 4-228 (240)
27 4a82_A Cystic fibrosis transme 100.0 8.1E-44 2.8E-48 365.7 7.1 224 48-310 309-566 (578)
28 3qf4_B Uncharacterized ABC tra 100.0 4.4E-44 1.5E-48 369.0 3.5 222 48-309 325-579 (598)
29 2yl4_A ATP-binding cassette SU 100.0 2.1E-43 7.2E-48 363.8 8.4 232 48-314 310-576 (595)
30 3b60_A Lipid A export ATP-bind 100.0 1.4E-43 4.9E-48 364.1 6.7 224 48-309 313-568 (582)
31 3gd7_A Fusion complex of cysti 100.0 4.3E-43 1.5E-47 343.5 8.8 213 68-320 17-254 (390)
32 2yz2_A Putative ABC transporte 100.0 2.1E-42 7.3E-47 322.9 12.3 198 70-312 2-231 (266)
33 3qf4_A ABC transporter, ATP-bi 100.0 7.2E-43 2.5E-47 359.2 9.8 224 48-309 311-567 (587)
34 2ihy_A ABC transporter, ATP-bi 100.0 3.1E-42 1.1E-46 323.9 12.1 202 68-308 19-252 (279)
35 2ghi_A Transport protein; mult 100.0 6.2E-42 2.1E-46 318.7 10.3 203 68-309 15-243 (260)
36 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-40 4E-45 308.4 17.3 194 70-304 3-229 (250)
37 2ixe_A Antigen peptide transpo 100.0 8.2E-42 2.8E-46 319.8 9.4 196 68-309 14-246 (271)
38 2zu0_C Probable ATP-dependent 100.0 1.3E-40 4.4E-45 311.0 16.6 204 68-307 18-253 (267)
39 2nq2_C Hypothetical ABC transp 100.0 2.1E-39 7.2E-44 300.6 17.1 182 70-308 4-217 (253)
40 3g5u_A MCG1178, multidrug resi 100.0 1.7E-40 5.9E-45 367.2 8.9 225 48-310 356-615 (1284)
41 2qi9_C Vitamin B12 import ATP- 100.0 7.2E-40 2.5E-44 303.0 11.3 185 70-308 4-222 (249)
42 2pze_A Cystic fibrosis transme 100.0 1.5E-39 5E-44 297.3 13.1 187 69-309 5-219 (229)
43 2pjz_A Hypothetical protein ST 100.0 7.2E-39 2.4E-43 298.6 15.0 185 70-308 1-215 (263)
44 1sgw_A Putative ABC transporte 100.0 3E-39 1E-43 292.4 11.0 175 68-297 8-210 (214)
45 2cbz_A Multidrug resistance-as 100.0 3.1E-39 1.1E-43 296.6 11.2 186 70-309 3-218 (237)
46 3g5u_A MCG1178, multidrug resi 100.0 1.5E-39 5.1E-44 359.8 10.2 227 48-310 999-1260(1284)
47 2bbs_A Cystic fibrosis transme 100.0 6E-37 2E-41 289.4 11.0 183 68-308 38-247 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 2E-32 6.8E-37 282.0 13.2 178 68-308 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.6E-32 5.6E-37 279.3 11.0 178 68-308 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-32 4.6E-37 279.7 9.4 176 68-304 267-473 (538)
51 2iw3_A Elongation factor 3A; a 100.0 2.6E-31 8.8E-36 283.8 7.2 208 68-302 669-981 (986)
52 3j16_B RLI1P; ribosome recycli 100.0 7.7E-31 2.6E-35 270.0 10.2 175 74-309 350-560 (608)
53 3bk7_A ABC transporter ATP-bin 100.0 2.6E-31 8.9E-36 273.7 5.4 178 70-295 83-304 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 2.5E-31 8.6E-36 270.6 3.7 177 71-295 21-234 (538)
55 3ux8_A Excinuclease ABC, A sub 100.0 7.5E-30 2.5E-34 266.1 11.0 190 92-311 34-301 (670)
56 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-28 7E-33 255.2 14.1 98 207-322 521-653 (670)
57 2iw3_A Elongation factor 3A; a 100.0 3.6E-28 1.2E-32 259.6 13.7 175 70-308 435-635 (986)
58 3j16_B RLI1P; ribosome recycli 99.9 7.3E-29 2.5E-33 255.3 5.6 176 75-296 82-298 (608)
59 3ozx_A RNAse L inhibitor; ATP 99.9 1.9E-28 6.4E-33 249.2 4.4 174 74-296 3-214 (538)
60 2vf7_A UVRA2, excinuclease ABC 99.9 5.4E-26 1.8E-30 240.5 16.0 95 207-320 708-838 (842)
61 3pih_A Uvrabc system protein A 99.9 2.3E-26 8E-31 245.1 12.8 97 206-320 782-913 (916)
62 2npi_A Protein CLP1; CLP1-PCF1 99.9 7.7E-30 2.6E-34 254.8 -13.7 177 68-306 116-336 (460)
63 2r6f_A Excinuclease ABC subuni 99.9 4.6E-25 1.6E-29 234.4 13.8 96 207-320 823-953 (972)
64 2ygr_A Uvrabc system protein A 99.9 1.7E-24 6E-29 230.6 13.2 96 207-320 841-971 (993)
65 4aby_A DNA repair protein RECN 99.9 5E-23 1.7E-27 202.0 11.8 54 246-300 296-380 (415)
66 2v9p_A Replication protein E1; 99.9 1.2E-25 4.1E-30 213.1 -10.1 175 50-306 75-264 (305)
67 1e69_A Chromosome segregation 99.9 2E-21 6.7E-26 185.4 12.0 73 225-297 199-301 (322)
68 4gp7_A Metallophosphoesterase; 99.8 9.4E-21 3.2E-25 164.5 6.4 30 94-123 1-30 (171)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.3E-19 4.3E-24 176.1 13.2 60 239-299 273-364 (365)
70 2dpy_A FLII, flagellum-specifi 99.8 2.7E-22 9.2E-27 199.2 -7.9 187 68-310 129-346 (438)
71 3b9q_A Chloroplast SRP recepto 99.8 5.9E-21 2E-25 180.9 -2.8 159 93-298 91-285 (302)
72 1tq4_A IIGP1, interferon-induc 99.8 3.5E-21 1.2E-25 189.5 -4.6 139 92-289 39-248 (413)
73 3b85_A Phosphate starvation-in 99.8 7.1E-21 2.4E-25 171.1 -3.0 60 92-168 16-75 (208)
74 1z6g_A Guanylate kinase; struc 99.8 4.1E-21 1.4E-25 173.4 -4.8 46 92-146 13-58 (218)
75 2obl_A ESCN; ATPase, hydrolase 99.7 6E-21 2.1E-25 184.2 -8.1 190 68-311 43-258 (347)
76 3sop_A Neuronal-specific septi 99.7 2E-20 6.7E-25 174.6 -4.4 127 104-278 4-148 (270)
77 1znw_A Guanylate kinase, GMP k 99.7 5.2E-20 1.8E-24 164.3 -1.7 34 92-127 12-45 (207)
78 1tf7_A KAIC; homohexamer, hexa 99.7 3.2E-21 1.1E-25 195.6 -11.4 66 69-145 11-79 (525)
79 2og2_A Putative signal recogni 99.7 3.2E-20 1.1E-24 179.6 -4.3 158 94-298 149-342 (359)
80 3aez_A Pantothenate kinase; tr 99.7 2.1E-20 7.3E-25 177.8 -11.0 172 68-309 41-256 (312)
81 1ye8_A Protein THEP1, hypothet 99.7 2.4E-18 8.1E-23 150.8 2.3 49 239-287 70-152 (178)
82 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.7E-18 9.1E-23 164.6 -1.7 48 92-144 161-208 (330)
83 2o5v_A DNA replication and rep 99.7 5.1E-16 1.7E-20 150.3 13.1 63 240-306 259-354 (359)
84 1tf7_A KAIC; homohexamer, hexa 99.6 1.6E-16 5.4E-21 161.1 4.1 143 70-296 257-444 (525)
85 1cr0_A DNA primase/helicase; R 99.6 2.8E-16 9.7E-21 147.3 4.2 47 92-143 25-72 (296)
86 3pih_A Uvrabc system protein A 99.6 4.1E-16 1.4E-20 166.4 4.4 95 208-319 443-571 (916)
87 2o8b_B DNA mismatch repair pro 99.6 4.3E-16 1.5E-20 168.5 4.5 145 69-303 749-937 (1022)
88 2qnr_A Septin-2, protein NEDD5 99.6 1E-17 3.6E-22 158.4 -7.2 144 74-279 2-166 (301)
89 3qkt_A DNA double-strand break 99.6 7.9E-14 2.7E-18 133.7 18.4 55 238-293 241-327 (339)
90 1lw7_A Transcriptional regulat 99.6 2.3E-17 7.8E-22 159.8 -6.5 182 92-307 158-354 (365)
91 4ad8_A DNA repair protein RECN 99.6 3E-15 1E-19 151.4 7.9 56 240-296 391-474 (517)
92 2eyu_A Twitching motility prot 99.6 4.9E-16 1.7E-20 144.1 1.6 60 70-146 5-65 (261)
93 1rj9_A FTSY, signal recognitio 99.6 1.5E-16 5.2E-21 150.7 -2.2 41 101-146 101-141 (304)
94 3thx_A DNA mismatch repair pro 99.5 1.2E-15 4.1E-20 163.4 1.8 62 245-307 721-812 (934)
95 2ehv_A Hypothetical protein PH 99.5 6.7E-16 2.3E-20 139.9 -0.3 60 70-144 6-69 (251)
96 2f1r_A Molybdopterin-guanine d 99.5 1.9E-17 6.4E-22 144.3 -10.3 112 103-260 3-118 (171)
97 1pui_A ENGB, probable GTP-bind 99.5 1.8E-15 6.1E-20 133.6 2.0 62 70-140 3-64 (210)
98 2r6f_A Excinuclease ABC subuni 99.5 2.1E-14 7.1E-19 153.0 8.7 90 204-311 480-603 (972)
99 2vf7_A UVRA2, excinuclease ABC 99.5 1.2E-14 4E-19 154.1 6.0 91 203-311 354-478 (842)
100 1w1w_A Structural maintenance 99.5 1.7E-13 5.8E-18 135.3 12.8 55 238-293 326-410 (430)
101 2jeo_A Uridine-cytidine kinase 99.5 2.5E-15 8.4E-20 137.4 -0.6 134 92-279 15-164 (245)
102 1htw_A HI0065; nucleotide-bind 99.4 1.8E-15 6.2E-20 130.0 -4.7 87 72-180 9-96 (158)
103 4a74_A DNA repair and recombin 99.4 6.2E-14 2.1E-18 125.3 4.4 47 98-144 21-69 (231)
104 3asz_A Uridine kinase; cytidin 99.4 2.5E-15 8.5E-20 133.5 -5.3 29 99-127 3-31 (211)
105 3thx_B DNA mismatch repair pro 99.4 1.1E-13 3.9E-18 147.8 6.0 36 92-127 663-698 (918)
106 2i3b_A HCR-ntpase, human cance 99.4 1E-14 3.6E-19 128.9 -2.7 54 102-168 1-54 (189)
107 2ygr_A Uvrabc system protein A 99.4 2.6E-13 8.9E-18 145.0 7.3 89 205-311 498-620 (993)
108 3e70_C DPA, signal recognition 99.4 2.1E-14 7.2E-19 137.3 -1.3 44 98-146 125-168 (328)
109 2yhs_A FTSY, cell division pro 99.4 7.4E-15 2.5E-19 146.8 -4.7 49 93-146 284-332 (503)
110 2rcn_A Probable GTPase ENGC; Y 99.4 1.7E-13 5.8E-18 132.3 4.4 122 92-260 206-328 (358)
111 2yv5_A YJEQ protein; hydrolase 99.4 1.3E-14 4.5E-19 137.1 -3.8 131 97-258 160-300 (302)
112 2w0m_A SSO2452; RECA, SSPF, un 99.4 1.3E-12 4.4E-17 116.5 8.9 48 92-144 12-60 (235)
113 3szr_A Interferon-induced GTP- 99.4 8.4E-15 2.9E-19 151.0 -6.3 170 70-278 10-194 (608)
114 1f2t_B RAD50 ABC-ATPase; DNA d 99.3 2.1E-12 7.2E-17 109.7 8.9 87 205-293 14-136 (148)
115 2qag_C Septin-7; cell cycle, c 99.3 3.9E-14 1.3E-18 139.6 -2.7 48 68-127 9-56 (418)
116 1u0l_A Probable GTPase ENGC; p 99.3 4.2E-14 1.4E-18 133.5 -2.4 122 97-248 164-294 (301)
117 1ewq_A DNA mismatch repair pro 99.3 5.3E-13 1.8E-17 140.5 5.0 33 92-127 569-601 (765)
118 1nij_A Hypothetical protein YJ 99.3 5.3E-14 1.8E-18 133.8 -3.4 153 103-278 5-187 (318)
119 1p9r_A General secretion pathw 99.3 5.4E-15 1.8E-19 145.8 -11.7 63 71-146 144-206 (418)
120 2ewv_A Twitching motility prot 99.3 8.3E-14 2.8E-18 135.4 -4.4 55 99-166 133-188 (372)
121 1pzn_A RAD51, DNA repair and r 99.3 1.8E-12 6.1E-17 124.9 4.2 48 92-144 120-175 (349)
122 1wb9_A DNA mismatch repair pro 99.2 2.9E-12 9.8E-17 135.6 4.5 35 92-127 598-632 (800)
123 2qm8_A GTPase/ATPase; G protei 99.2 2.4E-13 8.1E-18 130.5 -4.4 91 70-171 29-119 (337)
124 3jvv_A Twitching mobility prot 99.2 4.3E-12 1.5E-16 122.6 4.3 60 74-142 92-159 (356)
125 1zp6_A Hypothetical protein AT 99.2 1.7E-13 5.9E-18 119.4 -5.1 41 98-145 5-45 (191)
126 1nlf_A Regulatory protein REPA 99.2 3.4E-11 1.2E-15 111.8 9.5 30 98-127 26-55 (279)
127 3euj_A Chromosome partition pr 99.2 9.1E-12 3.1E-16 124.5 5.7 49 92-146 20-68 (483)
128 3kta_B Chromosome segregation 99.2 2.8E-11 9.4E-16 105.4 6.7 66 225-290 44-138 (173)
129 2gza_A Type IV secretion syste 99.2 1.9E-12 6.5E-17 125.2 -1.3 66 72-143 137-211 (361)
130 2qag_B Septin-6, protein NEDD5 99.1 1.2E-12 4.2E-17 128.9 -3.4 49 70-126 16-66 (427)
131 2cvh_A DNA repair and recombin 99.1 1.9E-10 6.6E-15 101.8 8.3 44 92-142 9-53 (220)
132 1in4_A RUVB, holliday junction 99.1 1.2E-13 4E-18 132.1 -13.8 69 70-145 18-93 (334)
133 2bdt_A BH3686; alpha-beta prot 99.1 8.4E-13 2.9E-17 115.2 -7.8 36 102-145 2-37 (189)
134 1t9h_A YLOQ, probable GTPase E 99.0 6.8E-12 2.3E-16 118.8 -3.7 109 97-220 168-287 (307)
135 1odf_A YGR205W, hypothetical 3 99.0 9.3E-12 3.2E-16 117.0 -3.5 126 100-270 29-168 (290)
136 2x8a_A Nuclear valosin-contain 99.0 1.2E-12 4E-17 122.0 -10.9 46 92-146 36-81 (274)
137 1n0w_A DNA repair protein RAD5 99.0 2.3E-10 8E-15 102.8 3.5 47 98-144 20-68 (243)
138 3tr0_A Guanylate kinase, GMP k 99.0 6.7E-10 2.3E-14 97.4 6.2 42 96-146 1-42 (205)
139 1sq5_A Pantothenate kinase; P- 98.9 2.9E-11 1E-15 114.3 -3.5 67 68-145 35-123 (308)
140 1qhl_A Protein (cell division 98.9 4.9E-11 1.7E-15 108.2 -2.1 58 70-146 9-66 (227)
141 1s96_A Guanylate kinase, GMP k 98.9 3.6E-10 1.2E-14 101.8 3.5 46 95-145 9-56 (219)
142 1udx_A The GTP-binding protein 98.9 5.5E-10 1.9E-14 109.9 4.7 35 92-126 147-181 (416)
143 3lnc_A Guanylate kinase, GMP k 98.9 2.6E-10 9.1E-15 102.6 2.1 36 92-127 17-53 (231)
144 2bbw_A Adenylate kinase 4, AK4 98.9 2.1E-11 7.1E-16 111.1 -6.3 39 101-144 26-67 (246)
145 3nwj_A ATSK2; P loop, shikimat 98.8 3E-10 1E-14 104.4 -0.6 55 68-127 15-73 (250)
146 1vma_A Cell division protein F 98.8 2.3E-09 8E-14 101.3 5.4 47 95-146 97-143 (306)
147 3lda_A DNA repair protein RAD5 98.8 6E-09 2.1E-13 102.0 8.1 42 98-144 174-222 (400)
148 3c8u_A Fructokinase; YP_612366 98.7 3.8E-09 1.3E-13 93.6 3.1 42 99-145 19-63 (208)
149 2ius_A DNA translocase FTSK; n 98.7 1.7E-09 5.9E-14 108.8 0.9 47 95-146 160-208 (512)
150 2oap_1 GSPE-2, type II secreti 98.7 3.5E-09 1.2E-13 106.8 1.5 48 92-144 250-297 (511)
151 3uie_A Adenylyl-sulfate kinase 98.6 2.7E-09 9.1E-14 94.0 -0.3 61 74-146 3-65 (200)
152 3kta_A Chromosome segregation 98.6 3E-08 1E-12 85.4 6.3 40 93-138 18-57 (182)
153 3auy_A DNA double-strand break 98.6 6.4E-08 2.2E-12 93.5 8.5 83 209-293 245-359 (371)
154 1lvg_A Guanylate kinase, GMP k 98.6 1.2E-08 4.1E-13 90.0 2.9 28 100-127 2-29 (198)
155 1ls1_A Signal recognition part 98.6 9.3E-08 3.2E-12 89.8 8.8 61 71-146 77-137 (295)
156 1sxj_E Activator 1 40 kDa subu 98.5 9.3E-08 3.2E-12 90.8 6.1 38 104-146 38-76 (354)
157 2j41_A Guanylate kinase; GMP, 98.5 5.3E-08 1.8E-12 85.2 3.8 31 97-127 1-31 (207)
158 4e22_A Cytidylate kinase; P-lo 98.4 3.8E-08 1.3E-12 90.0 0.5 42 100-146 25-77 (252)
159 3vaa_A Shikimate kinase, SK; s 98.4 1.2E-07 4.2E-12 83.1 3.7 36 92-127 15-50 (199)
160 3a00_A Guanylate kinase, GMP k 98.4 9.8E-08 3.3E-12 83.0 2.9 26 102-127 1-26 (186)
161 1kgd_A CASK, peripheral plasma 98.4 1.2E-07 4E-12 82.1 3.2 28 100-127 3-30 (180)
162 4eun_A Thermoresistant glucoki 98.4 1.5E-07 5.3E-12 82.6 4.0 42 96-146 23-64 (200)
163 2r6a_A DNAB helicase, replicat 98.4 7.5E-07 2.6E-11 88.3 9.4 48 92-144 193-241 (454)
164 1zu4_A FTSY; GTPase, signal re 98.3 1.5E-07 5.1E-12 89.4 3.0 49 93-146 96-144 (320)
165 1rz3_A Hypothetical protein rb 98.3 1.7E-07 6E-12 82.4 3.1 43 98-145 18-60 (201)
166 2kjq_A DNAA-related protein; s 98.3 3.1E-07 1.1E-11 77.4 3.5 39 101-145 35-75 (149)
167 3ec2_A DNA replication protein 98.3 1.7E-07 5.8E-12 80.6 1.4 36 96-136 32-67 (180)
168 3hr8_A Protein RECA; alpha and 98.2 1.1E-07 3.8E-12 91.6 -1.1 40 99-143 58-98 (356)
169 1oix_A RAS-related protein RAB 98.2 8.7E-07 3E-11 76.9 4.3 42 104-145 31-78 (191)
170 1ixz_A ATP-dependent metallopr 98.2 2.9E-07 9.9E-12 83.6 1.2 60 71-145 26-85 (254)
171 2vp4_A Deoxynucleoside kinase; 98.2 4E-07 1.4E-11 81.9 2.1 42 95-145 13-54 (230)
172 3cr8_A Sulfate adenylyltranfer 98.2 4E-07 1.4E-11 92.5 2.1 43 98-145 365-409 (552)
173 2qtf_A Protein HFLX, GTP-bindi 98.2 4.5E-06 1.6E-10 80.5 9.2 42 104-145 181-228 (364)
174 1iy2_A ATP-dependent metallopr 98.2 3.6E-07 1.2E-11 84.4 1.3 59 72-145 51-109 (278)
175 1svm_A Large T antigen; AAA+ f 98.2 5E-07 1.7E-11 87.7 2.1 36 92-127 159-194 (377)
176 3ice_A Transcription terminati 98.2 4.1E-07 1.4E-11 88.2 1.3 54 69-127 132-199 (422)
177 3tqc_A Pantothenate kinase; bi 98.2 4.1E-07 1.4E-11 86.4 1.3 60 74-142 64-129 (321)
178 3tau_A Guanylate kinase, GMP k 98.1 1.1E-06 3.8E-11 77.7 3.9 28 100-127 6-33 (208)
179 1knq_A Gluconate kinase; ALFA/ 98.1 1.5E-06 5E-11 74.2 3.9 37 100-145 6-42 (175)
180 2f9l_A RAB11B, member RAS onco 98.1 1.9E-06 6.5E-11 74.9 4.5 42 104-145 7-54 (199)
181 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 1.6E-06 5.4E-11 84.5 4.2 42 98-144 16-69 (392)
182 3ney_A 55 kDa erythrocyte memb 98.1 1.9E-06 6.5E-11 76.2 3.8 32 96-127 13-44 (197)
183 2p67_A LAO/AO transport system 98.0 1.3E-06 4.5E-11 83.4 1.8 65 70-145 30-94 (341)
184 1cke_A CK, MSSA, protein (cyti 98.0 1E-06 3.5E-11 78.2 -0.1 37 102-140 5-41 (227)
185 2px0_A Flagellar biosynthesis 98.0 3.5E-06 1.2E-10 79.0 3.6 41 100-145 103-144 (296)
186 1kag_A SKI, shikimate kinase I 98.0 4E-06 1.4E-10 71.1 3.5 27 101-127 3-29 (173)
187 2pez_A Bifunctional 3'-phospho 97.9 4.9E-06 1.7E-10 71.3 3.7 40 100-145 3-44 (179)
188 2www_A Methylmalonic aciduria 97.9 4.7E-06 1.6E-10 79.9 3.7 42 100-146 72-113 (349)
189 4eaq_A DTMP kinase, thymidylat 97.9 8.5E-06 2.9E-10 73.4 4.6 43 92-140 13-58 (229)
190 2qt1_A Nicotinamide riboside k 97.9 5.5E-06 1.9E-10 72.7 3.2 33 95-127 14-46 (207)
191 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 8.2E-06 2.8E-10 68.6 3.9 34 92-126 14-47 (149)
192 2dy1_A Elongation factor G; tr 97.8 3.6E-06 1.2E-10 87.4 1.2 46 96-145 3-48 (665)
193 3k1j_A LON protease, ATP-depen 97.8 3.4E-06 1.2E-10 86.6 0.9 49 92-145 50-99 (604)
194 1m7g_A Adenylylsulfate kinase; 97.8 7.6E-06 2.6E-10 72.2 2.8 44 97-145 20-65 (211)
195 2ffh_A Protein (FFH); SRP54, s 97.8 1.2E-05 4.2E-10 79.0 3.9 59 73-146 79-137 (425)
196 3m6a_A ATP-dependent protease 97.8 5.8E-06 2E-10 83.9 1.6 46 92-143 99-144 (543)
197 3t34_A Dynamin-related protein 97.7 3.7E-06 1.3E-10 80.6 -0.1 59 73-142 11-71 (360)
198 3qks_A DNA double-strand break 97.7 3.8E-05 1.3E-09 67.8 5.9 34 92-126 14-47 (203)
199 1j8m_F SRP54, signal recogniti 97.7 9.9E-06 3.4E-10 76.0 2.1 60 73-146 77-137 (297)
200 1f6b_A SAR1; gtpases, N-termin 97.7 8E-06 2.7E-10 71.1 1.4 61 77-144 6-70 (198)
201 1m2o_B GTP-binding protein SAR 97.7 3.2E-05 1.1E-09 66.7 4.4 32 92-124 14-45 (190)
202 2dr3_A UPF0273 protein PH0284; 97.6 3.4E-05 1.2E-09 68.7 4.6 46 92-142 12-59 (247)
203 2gj8_A MNME, tRNA modification 97.6 3.8E-05 1.3E-09 65.2 4.5 27 100-126 2-28 (172)
204 2yvu_A Probable adenylyl-sulfa 97.6 2.8E-05 9.7E-10 66.9 3.6 42 97-143 8-50 (186)
205 1y63_A LMAJ004144AAA protein; 97.6 3E-05 1E-09 66.8 3.3 31 95-125 3-33 (184)
206 2dhr_A FTSH; AAA+ protein, hex 97.5 2.8E-05 9.5E-10 78.1 2.7 46 92-146 56-101 (499)
207 2qor_A Guanylate kinase; phosp 97.5 4E-05 1.4E-09 67.2 3.4 30 98-127 8-37 (204)
208 1jjv_A Dephospho-COA kinase; P 97.5 4.5E-05 1.5E-09 66.6 3.4 21 104-124 4-24 (206)
209 3auy_A DNA double-strand break 97.5 0.00013 4.3E-09 70.3 6.4 32 92-124 16-47 (371)
210 2qag_A Septin-2, protein NEDD5 97.5 9.1E-06 3.1E-10 78.2 -1.8 46 70-127 17-62 (361)
211 1mky_A Probable GTP-binding pr 97.4 8.5E-05 2.9E-09 73.1 4.8 42 104-145 182-230 (439)
212 2wjg_A FEOB, ferrous iron tran 97.4 8.4E-05 2.9E-09 63.2 3.9 22 104-125 9-30 (188)
213 2if2_A Dephospho-COA kinase; a 97.4 7.1E-05 2.4E-09 65.1 3.3 21 104-124 3-23 (204)
214 2wji_A Ferrous iron transport 97.4 0.00012 4.2E-09 61.3 4.6 23 104-126 5-27 (165)
215 4a1f_A DNAB helicase, replicat 97.4 0.00025 8.5E-09 67.6 7.2 36 92-127 36-71 (338)
216 1np6_A Molybdopterin-guanine d 97.4 0.00011 3.8E-09 63.4 4.0 40 103-144 7-46 (174)
217 2ohf_A Protein OLA1, GTP-bindi 97.3 9.7E-05 3.3E-09 71.9 3.7 46 98-143 18-69 (396)
218 1sxj_C Activator 1 40 kDa subu 97.3 7.8E-06 2.7E-10 77.5 -4.0 44 92-140 34-79 (340)
219 1ega_A Protein (GTP-binding pr 97.3 7.2E-05 2.5E-09 70.0 2.3 26 101-126 7-32 (301)
220 3t61_A Gluconokinase; PSI-biol 97.3 0.00013 4.5E-09 63.5 3.2 26 102-127 18-43 (202)
221 1lv7_A FTSH; alpha/beta domain 97.2 0.00016 5.5E-09 65.3 3.8 45 92-145 37-81 (257)
222 2ga8_A Hypothetical 39.9 kDa p 97.2 5.3E-05 1.8E-09 72.7 0.6 36 92-127 12-49 (359)
223 2xau_A PRE-mRNA-splicing facto 97.2 0.00032 1.1E-08 73.9 6.6 30 98-127 105-134 (773)
224 3cm0_A Adenylate kinase; ATP-b 97.2 0.00016 5.4E-09 61.8 3.1 27 100-126 2-28 (186)
225 3ihw_A Centg3; RAS, centaurin, 97.2 0.00047 1.6E-08 59.0 6.1 41 104-144 22-66 (184)
226 2zej_A Dardarin, leucine-rich 97.2 0.00016 5.5E-09 61.7 3.1 24 104-127 4-27 (184)
227 3kb2_A SPBC2 prophage-derived 97.1 0.00022 7.6E-09 59.7 3.3 24 104-127 3-26 (173)
228 1q3t_A Cytidylate kinase; nucl 97.1 0.00024 8.3E-09 63.6 3.7 29 98-126 12-40 (236)
229 2p5t_B PEZT; postsegregational 97.1 0.00022 7.4E-09 64.8 3.3 41 98-145 28-68 (253)
230 1qhx_A CPT, protein (chloramph 97.1 0.00035 1.2E-08 59.1 3.8 26 102-127 3-28 (178)
231 1gtv_A TMK, thymidylate kinase 97.0 0.00014 4.7E-09 63.5 1.0 24 104-127 2-25 (214)
232 3kl4_A SRP54, signal recogniti 97.0 0.00032 1.1E-08 69.1 3.5 41 101-146 96-136 (433)
233 3r20_A Cytidylate kinase; stru 97.0 0.00034 1.2E-08 63.2 3.4 25 102-126 9-33 (233)
234 3lxx_A GTPase IMAP family memb 97.0 0.00042 1.4E-08 61.9 3.8 24 104-127 31-54 (239)
235 2zr9_A Protein RECA, recombina 97.0 0.00042 1.4E-08 66.3 3.9 38 98-140 57-94 (349)
236 1kht_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 58.9 3.5 26 102-127 3-28 (192)
237 3lw7_A Adenylate kinase relate 96.9 0.00041 1.4E-08 57.8 3.2 19 104-122 3-21 (179)
238 2jaq_A Deoxyguanosine kinase; 96.9 0.00045 1.5E-08 59.5 3.4 24 104-127 2-25 (205)
239 2rhm_A Putative kinase; P-loop 96.9 0.00048 1.6E-08 58.9 3.4 28 100-127 3-30 (193)
240 3bh0_A DNAB-like replicative h 96.9 0.00046 1.6E-08 64.9 3.6 35 92-126 58-92 (315)
241 1ypw_A Transitional endoplasmi 96.9 0.00033 1.1E-08 74.2 2.8 32 96-127 232-263 (806)
242 3cbq_A GTP-binding protein REM 96.9 0.001 3.5E-08 57.4 5.1 23 104-126 25-47 (195)
243 1vht_A Dephospho-COA kinase; s 96.9 0.00062 2.1E-08 59.9 3.7 24 101-124 3-26 (218)
244 1z08_A RAS-related protein RAB 96.9 0.0012 4.1E-08 54.6 5.4 23 104-126 8-30 (170)
245 3iij_A Coilin-interacting nucl 96.9 0.00038 1.3E-08 59.2 2.3 28 100-127 9-36 (180)
246 3trf_A Shikimate kinase, SK; a 96.8 0.00061 2.1E-08 58.0 3.5 27 101-127 4-30 (185)
247 1ex7_A Guanylate kinase; subst 96.8 0.00057 1.9E-08 59.6 3.3 23 105-127 4-26 (186)
248 1via_A Shikimate kinase; struc 96.8 0.00052 1.8E-08 58.2 2.9 24 104-127 6-29 (175)
249 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00071 2.4E-08 65.2 4.2 37 101-142 34-70 (392)
250 1ek0_A Protein (GTP-binding pr 96.8 0.0018 6.2E-08 53.3 6.2 23 104-126 5-27 (170)
251 1jal_A YCHF protein; nucleotid 96.8 0.00087 3E-08 64.5 4.7 41 102-142 2-48 (363)
252 2ew1_A RAS-related protein RAB 96.8 0.0016 5.4E-08 56.7 6.1 23 104-126 28-50 (201)
253 1z0j_A RAB-22, RAS-related pro 96.8 0.0019 6.5E-08 53.3 6.3 23 104-126 8-30 (170)
254 2ze6_A Isopentenyl transferase 96.8 0.00061 2.1E-08 62.0 3.4 24 104-127 3-26 (253)
255 2v54_A DTMP kinase, thymidylat 96.8 0.00075 2.6E-08 58.3 3.8 26 101-126 3-28 (204)
256 1uf9_A TT1252 protein; P-loop, 96.8 0.00071 2.4E-08 58.3 3.6 24 102-125 8-31 (203)
257 3cf0_A Transitional endoplasmi 96.8 0.00066 2.3E-08 63.1 3.6 42 96-144 43-84 (301)
258 2fn4_A P23, RAS-related protei 96.8 0.002 6.9E-08 53.7 6.2 22 104-125 11-32 (181)
259 2bcg_Y Protein YP2, GTP-bindin 96.8 0.002 6.8E-08 55.6 6.3 23 104-126 10-32 (206)
260 1fzq_A ADP-ribosylation factor 96.8 0.00085 2.9E-08 57.0 3.7 23 103-125 17-39 (181)
261 3k53_A Ferrous iron transport 96.8 0.00067 2.3E-08 62.0 3.2 24 104-127 5-28 (271)
262 1xjc_A MOBB protein homolog; s 96.7 0.00086 2.9E-08 57.6 3.6 25 103-127 5-29 (169)
263 1ly1_A Polynucleotide kinase; 96.7 0.00078 2.7E-08 56.7 3.4 22 103-124 3-24 (181)
264 2c95_A Adenylate kinase 1; tra 96.7 0.00083 2.8E-08 57.5 3.5 28 100-127 7-34 (196)
265 2plr_A DTMP kinase, probable t 96.7 0.0009 3.1E-08 57.9 3.7 27 101-127 3-29 (213)
266 2wwf_A Thymidilate kinase, put 96.7 0.00093 3.2E-08 58.0 3.6 28 100-127 8-35 (212)
267 2oil_A CATX-8, RAS-related pro 96.7 0.0025 8.7E-08 54.2 6.3 23 104-126 27-49 (193)
268 3ake_A Cytidylate kinase; CMP 96.7 0.00092 3.2E-08 57.8 3.3 24 104-127 4-27 (208)
269 2ged_A SR-beta, signal recogni 96.7 0.00099 3.4E-08 56.7 3.4 24 103-126 49-72 (193)
270 4fcw_A Chaperone protein CLPB; 96.6 0.0012 4.2E-08 60.8 4.2 32 103-139 48-79 (311)
271 1nn5_A Similar to deoxythymidy 96.6 0.001 3.6E-08 57.8 3.5 29 99-127 6-34 (215)
272 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.0032 1.1E-07 52.8 6.5 22 104-125 7-28 (186)
273 1vg8_A RAS-related protein RAB 96.6 0.0022 7.7E-08 55.0 5.5 23 104-126 10-32 (207)
274 1nks_A Adenylate kinase; therm 96.6 0.001 3.4E-08 56.6 3.2 24 104-127 3-26 (194)
275 1tev_A UMP-CMP kinase; ploop, 96.6 0.0012 4E-08 56.3 3.5 26 102-127 3-28 (196)
276 1z2a_A RAS-related protein RAB 96.6 0.0011 3.9E-08 54.5 3.4 23 104-126 7-29 (168)
277 1c1y_A RAS-related protein RAP 96.6 0.0021 7.3E-08 52.8 5.1 22 104-125 5-26 (167)
278 1ko7_A HPR kinase/phosphatase; 96.6 0.0022 7.6E-08 60.4 5.6 32 92-124 135-166 (314)
279 1gvn_B Zeta; postsegregational 96.6 0.0011 3.7E-08 61.6 3.3 36 100-142 31-66 (287)
280 2dyk_A GTP-binding protein; GT 96.6 0.0013 4.3E-08 53.9 3.4 23 104-126 3-25 (161)
281 2ce2_X GTPase HRAS; signaling 96.6 0.0012 4.1E-08 53.9 3.2 23 104-126 5-27 (166)
282 1kao_A RAP2A; GTP-binding prot 96.6 0.0013 4.4E-08 53.9 3.4 23 104-126 5-27 (167)
283 1u8z_A RAS-related protein RAL 96.6 0.0025 8.6E-08 52.2 5.1 23 104-126 6-28 (168)
284 2a5j_A RAS-related protein RAB 96.5 0.003 1E-07 53.8 5.7 23 104-126 23-45 (191)
285 2erx_A GTP-binding protein DI- 96.5 0.0014 4.7E-08 54.2 3.4 22 104-125 5-26 (172)
286 2nzj_A GTP-binding protein REM 96.5 0.0013 4.4E-08 54.7 3.3 23 104-126 6-28 (175)
287 3q72_A GTP-binding protein RAD 96.5 0.0011 3.7E-08 54.7 2.8 24 104-127 4-27 (166)
288 2z0h_A DTMP kinase, thymidylat 96.5 0.0013 4.4E-08 56.3 3.3 24 104-127 2-25 (197)
289 3cph_A RAS-related protein SEC 96.5 0.0039 1.3E-07 53.7 6.4 24 103-126 21-44 (213)
290 3lxw_A GTPase IMAP family memb 96.5 0.0013 4.4E-08 59.4 3.4 24 104-127 23-46 (247)
291 1zbd_A Rabphilin-3A; G protein 96.5 0.0038 1.3E-07 53.5 6.2 23 104-126 10-32 (203)
292 1ky3_A GTP-binding protein YPT 96.5 0.0015 5E-08 54.6 3.4 23 104-126 10-32 (182)
293 2vli_A Antibiotic resistance p 96.5 0.0011 3.8E-08 56.1 2.7 27 101-127 4-30 (183)
294 2bwj_A Adenylate kinase 5; pho 96.5 0.0011 3.7E-08 56.9 2.7 30 98-127 8-37 (199)
295 1g16_A RAS-related protein SEC 96.5 0.0014 4.8E-08 54.1 3.2 23 104-126 5-27 (170)
296 3b1v_A Ferrous iron uptake tra 96.5 0.0013 4.5E-08 60.5 3.3 23 104-126 5-27 (272)
297 3q85_A GTP-binding protein REM 96.5 0.0015 5E-08 54.1 3.2 23 104-126 4-26 (169)
298 1x3s_A RAS-related protein RAB 96.5 0.0042 1.4E-07 52.5 6.2 23 104-126 17-39 (195)
299 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0016 5.4E-08 54.3 3.4 23 104-126 9-31 (177)
300 2lkc_A Translation initiation 96.5 0.0018 6.2E-08 54.0 3.8 25 101-125 7-31 (178)
301 1svi_A GTP-binding protein YSX 96.5 0.0014 4.7E-08 55.8 3.0 24 102-125 23-46 (195)
302 3pqc_A Probable GTP-binding pr 96.5 0.0014 4.7E-08 55.5 3.0 23 104-126 25-47 (195)
303 1aky_A Adenylate kinase; ATP:A 96.4 0.0017 5.9E-08 57.1 3.7 28 100-127 2-29 (220)
304 3tw8_B RAS-related protein RAB 96.4 0.0014 4.8E-08 54.6 3.0 23 104-126 11-33 (181)
305 3llm_A ATP-dependent RNA helic 96.4 0.0011 3.8E-08 59.1 2.4 27 98-124 72-98 (235)
306 2ce7_A Cell division protein F 96.4 0.00077 2.6E-08 67.2 1.4 34 92-127 41-74 (476)
307 2q3h_A RAS homolog gene family 96.4 0.0036 1.2E-07 53.6 5.5 24 102-125 20-43 (201)
308 3clv_A RAB5 protein, putative; 96.4 0.0017 6E-08 54.9 3.4 23 104-126 9-31 (208)
309 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0034 1.1E-07 52.8 5.2 23 104-126 6-28 (189)
310 1r2q_A RAS-related protein RAB 96.4 0.0018 6.2E-08 53.3 3.4 22 104-125 8-29 (170)
311 1zd8_A GTP:AMP phosphotransfer 96.4 0.0017 5.9E-08 57.4 3.4 28 100-127 5-32 (227)
312 3fb4_A Adenylate kinase; psych 96.4 0.0018 6E-08 56.6 3.3 24 104-127 2-25 (216)
313 1zuh_A Shikimate kinase; alpha 96.4 0.0019 6.5E-08 54.2 3.4 25 103-127 8-32 (168)
314 2w58_A DNAI, primosome compone 96.4 0.0028 9.4E-08 54.8 4.5 25 103-127 55-79 (202)
315 3bc1_A RAS-related protein RAB 96.4 0.0019 6.5E-08 54.4 3.4 23 104-126 13-35 (195)
316 1upt_A ARL1, ADP-ribosylation 96.4 0.002 6.7E-08 53.3 3.4 23 103-125 8-30 (171)
317 2cxx_A Probable GTP-binding pr 96.4 0.0017 5.7E-08 54.9 2.9 23 104-126 3-25 (190)
318 1e6c_A Shikimate kinase; phosp 96.4 0.0017 5.8E-08 54.4 2.9 25 103-127 3-27 (173)
319 1v5w_A DMC1, meiotic recombina 96.3 0.0032 1.1E-07 59.8 5.2 28 98-125 118-145 (343)
320 2pbr_A DTMP kinase, thymidylat 96.3 0.0019 6.6E-08 55.0 3.3 24 104-127 2-25 (195)
321 2cdn_A Adenylate kinase; phosp 96.3 0.0022 7.5E-08 55.5 3.7 28 100-127 18-45 (201)
322 1r8s_A ADP-ribosylation factor 96.3 0.0021 7.1E-08 52.9 3.4 22 104-125 2-23 (164)
323 3bos_A Putative DNA replicatio 96.3 0.0024 8.1E-08 56.0 3.9 27 101-127 51-77 (242)
324 2gco_A H9, RHO-related GTP-bin 96.3 0.0053 1.8E-07 52.8 6.1 23 104-126 27-49 (201)
325 3t5d_A Septin-7; GTP-binding p 96.3 0.0016 5.5E-08 59.6 2.9 23 104-126 10-32 (274)
326 2y8e_A RAB-protein 6, GH09086P 96.3 0.002 6.8E-08 53.6 3.2 22 104-125 16-37 (179)
327 1zak_A Adenylate kinase; ATP:A 96.3 0.0018 6.3E-08 57.0 3.1 27 101-127 4-30 (222)
328 2hxs_A RAB-26, RAS-related pro 96.3 0.0022 7.6E-08 53.4 3.5 23 104-126 8-30 (178)
329 2a9k_A RAS-related protein RAL 96.3 0.004 1.4E-07 52.1 5.1 23 104-126 20-42 (187)
330 2pt5_A Shikimate kinase, SK; a 96.3 0.0021 7.3E-08 53.6 3.3 24 104-127 2-25 (168)
331 1ukz_A Uridylate kinase; trans 96.3 0.0024 8.3E-08 55.2 3.7 28 100-127 13-40 (203)
332 2bov_A RAla, RAS-related prote 96.3 0.0044 1.5E-07 53.0 5.3 23 104-126 16-38 (206)
333 1moz_A ARL1, ADP-ribosylation 96.3 0.0014 4.6E-08 55.1 2.0 24 101-124 17-40 (183)
334 1z0f_A RAB14, member RAS oncog 96.3 0.0023 7.8E-08 53.2 3.4 23 104-126 17-39 (179)
335 3t1o_A Gliding protein MGLA; G 96.3 0.0023 8E-08 54.1 3.5 24 104-127 16-39 (198)
336 2iyv_A Shikimate kinase, SK; t 96.3 0.0019 6.5E-08 54.9 2.9 25 103-127 3-27 (184)
337 2g6b_A RAS-related protein RAB 96.3 0.0023 7.8E-08 53.5 3.4 23 104-126 12-34 (180)
338 3iby_A Ferrous iron transport 96.3 0.002 6.8E-08 58.7 3.2 23 104-126 3-25 (256)
339 2z43_A DNA repair and recombin 96.3 0.0038 1.3E-07 58.7 5.2 29 98-126 103-131 (324)
340 3dl0_A Adenylate kinase; phosp 96.3 0.0022 7.4E-08 56.1 3.3 24 104-127 2-25 (216)
341 3con_A GTPase NRAS; structural 96.3 0.0023 7.7E-08 54.3 3.4 23 104-126 23-45 (190)
342 1qf9_A UMP/CMP kinase, protein 96.3 0.0021 7.2E-08 54.6 3.1 26 102-127 6-31 (194)
343 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0042 1.4E-07 52.5 5.0 23 104-126 9-31 (184)
344 2efe_B Small GTP-binding prote 96.2 0.0025 8.5E-08 53.3 3.4 23 104-126 14-36 (181)
345 2qby_A CDC6 homolog 1, cell di 96.2 0.0023 7.8E-08 60.3 3.5 28 100-127 43-70 (386)
346 1uj2_A Uridine-cytidine kinase 96.2 0.0024 8.1E-08 57.7 3.4 25 103-127 23-47 (252)
347 1wf3_A GTP-binding protein; GT 96.2 0.0023 7.7E-08 59.8 3.4 23 104-126 9-31 (301)
348 3kkq_A RAS-related protein M-R 96.2 0.0048 1.7E-07 51.8 5.1 22 104-125 20-41 (183)
349 3oes_A GTPase rhebl1; small GT 96.2 0.0044 1.5E-07 53.3 4.9 25 103-127 25-49 (201)
350 2xtp_A GTPase IMAP family memb 96.2 0.0023 7.9E-08 57.7 3.2 24 103-126 23-46 (260)
351 2bme_A RAB4A, RAS-related prot 96.2 0.0025 8.4E-08 53.7 3.2 23 104-126 12-34 (186)
352 3t5g_A GTP-binding protein RHE 96.2 0.0047 1.6E-07 51.7 5.0 21 104-124 8-28 (181)
353 2grj_A Dephospho-COA kinase; T 96.2 0.0025 8.7E-08 55.6 3.3 24 103-126 13-36 (192)
354 1nrj_B SR-beta, signal recogni 96.2 0.0026 8.8E-08 55.3 3.4 23 104-126 14-36 (218)
355 2gf0_A GTP-binding protein DI- 96.2 0.0047 1.6E-07 52.5 5.0 22 104-125 10-31 (199)
356 3cpj_B GTP-binding protein YPT 96.2 0.0061 2.1E-07 53.4 5.7 23 104-126 15-37 (223)
357 3tkl_A RAS-related protein RAB 96.2 0.0028 9.4E-08 53.8 3.4 23 104-126 18-40 (196)
358 3iev_A GTP-binding protein ERA 96.2 0.0025 8.7E-08 59.5 3.4 26 100-126 9-34 (308)
359 2e87_A Hypothetical protein PH 96.2 0.0022 7.5E-08 61.2 2.9 26 101-126 166-191 (357)
360 2gf9_A RAS-related protein RAB 96.2 0.0028 9.6E-08 53.8 3.4 23 104-126 24-46 (189)
361 2fg5_A RAB-22B, RAS-related pr 96.2 0.0027 9.4E-08 54.2 3.3 23 104-126 25-47 (192)
362 1ksh_A ARF-like protein 2; sma 96.1 0.0028 9.6E-08 53.5 3.2 27 100-126 16-42 (186)
363 1a7j_A Phosphoribulokinase; tr 96.1 0.0016 5.5E-08 60.5 1.7 27 101-127 4-30 (290)
364 3reg_A RHO-like small GTPase; 96.1 0.0057 1.9E-07 52.1 5.1 23 104-126 25-47 (194)
365 1z06_A RAS-related protein RAB 96.1 0.0032 1.1E-07 53.5 3.4 22 104-125 22-43 (189)
366 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0021 7.2E-08 63.8 2.6 31 97-127 146-176 (473)
367 3i8s_A Ferrous iron transport 96.1 0.0028 9.6E-08 58.2 3.3 23 104-126 5-27 (274)
368 1fnn_A CDC6P, cell division co 96.1 0.0049 1.7E-07 58.3 5.0 27 101-127 41-69 (389)
369 3a1s_A Iron(II) transport prot 96.1 0.003 1E-07 57.5 3.4 23 104-126 7-29 (258)
370 3tlx_A Adenylate kinase 2; str 96.1 0.0034 1.2E-07 56.5 3.7 27 101-127 28-54 (243)
371 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0034 1.2E-07 57.1 3.7 27 101-127 3-29 (260)
372 2cjw_A GTP-binding protein GEM 96.1 0.0032 1.1E-07 54.1 3.4 22 104-125 8-29 (192)
373 3b9p_A CG5977-PA, isoform A; A 96.1 0.0033 1.1E-07 57.7 3.6 27 101-127 53-79 (297)
374 2dby_A GTP-binding protein; GD 96.1 0.0027 9.2E-08 61.1 3.1 23 104-126 3-25 (368)
375 3dz8_A RAS-related protein RAB 96.1 0.0032 1.1E-07 53.6 3.2 23 104-126 25-47 (191)
376 4dhe_A Probable GTP-binding pr 96.0 0.0015 5.2E-08 57.0 1.1 24 103-126 30-53 (223)
377 2j0v_A RAC-like GTP-binding pr 96.0 0.0081 2.8E-07 51.9 5.8 22 104-125 11-32 (212)
378 2wsm_A Hydrogenase expression/ 96.0 0.0033 1.1E-07 54.8 3.3 25 103-127 31-55 (221)
379 2h57_A ADP-ribosylation factor 96.0 0.0026 9E-08 54.0 2.5 24 103-126 22-45 (190)
380 2qu8_A Putative nucleolar GTP- 96.0 0.0032 1.1E-07 55.5 3.2 23 103-125 30-52 (228)
381 3bwd_D RAC-like GTP-binding pr 96.0 0.004 1.4E-07 52.0 3.7 23 103-125 9-31 (182)
382 1gwn_A RHO-related GTP-binding 96.0 0.0063 2.1E-07 52.9 5.0 23 104-126 30-52 (205)
383 1zj6_A ADP-ribosylation factor 96.0 0.0035 1.2E-07 53.1 3.2 23 102-124 16-38 (187)
384 2f6r_A COA synthase, bifunctio 96.0 0.0033 1.1E-07 58.0 3.2 23 102-124 75-97 (281)
385 1jwy_B Dynamin A GTPase domain 96.0 0.0033 1.1E-07 58.2 3.2 23 104-126 26-48 (315)
386 4bas_A ADP-ribosylation factor 96.0 0.0032 1.1E-07 53.5 3.0 24 103-126 18-41 (199)
387 1zd9_A ADP-ribosylation factor 96.0 0.0038 1.3E-07 53.1 3.4 23 104-126 24-46 (188)
388 1jbk_A CLPB protein; beta barr 96.0 0.0042 1.4E-07 52.0 3.6 28 100-127 41-68 (195)
389 2atv_A RERG, RAS-like estrogen 96.0 0.0039 1.3E-07 53.3 3.4 23 103-125 29-51 (196)
390 2il1_A RAB12; G-protein, GDP, 96.0 0.0032 1.1E-07 53.8 2.9 23 104-126 28-50 (192)
391 3c5c_A RAS-like protein 12; GD 96.0 0.0074 2.5E-07 51.3 5.2 22 104-125 23-44 (187)
392 2xb4_A Adenylate kinase; ATP-b 96.0 0.0037 1.3E-07 55.3 3.3 24 104-127 2-25 (223)
393 2p5s_A RAS and EF-hand domain 96.0 0.0038 1.3E-07 53.6 3.4 25 102-126 28-52 (199)
394 2h17_A ADP-ribosylation factor 96.0 0.0032 1.1E-07 53.1 2.8 22 104-125 23-44 (181)
395 3be4_A Adenylate kinase; malar 96.0 0.0038 1.3E-07 54.9 3.3 27 101-127 4-30 (217)
396 1l8q_A Chromosomal replication 96.0 0.0035 1.2E-07 58.4 3.2 26 102-127 37-62 (324)
397 2fv8_A H6, RHO-related GTP-bin 96.0 0.0039 1.3E-07 53.9 3.3 23 104-126 27-49 (207)
398 2o52_A RAS-related protein RAB 95.9 0.0037 1.3E-07 53.9 3.1 22 104-125 27-48 (200)
399 3def_A T7I23.11 protein; chlor 95.9 0.0039 1.3E-07 56.6 3.3 23 104-126 38-60 (262)
400 1h65_A Chloroplast outer envel 95.9 0.0039 1.3E-07 56.8 3.2 23 104-126 41-63 (270)
401 2iwr_A Centaurin gamma 1; ANK 95.9 0.0033 1.1E-07 52.6 2.5 22 104-125 9-30 (178)
402 1e4v_A Adenylate kinase; trans 95.9 0.0041 1.4E-07 54.4 3.2 24 104-127 2-25 (214)
403 2h92_A Cytidylate kinase; ross 95.9 0.0042 1.4E-07 54.3 3.2 26 102-127 3-28 (219)
404 2fh5_B SR-beta, signal recogni 95.9 0.0046 1.6E-07 53.6 3.4 23 104-126 9-31 (214)
405 3cnl_A YLQF, putative uncharac 95.9 0.0044 1.5E-07 56.7 3.4 25 103-127 100-124 (262)
406 2f7s_A C25KG, RAS-related prot 95.9 0.0045 1.5E-07 53.7 3.3 22 104-125 27-48 (217)
407 2j1l_A RHO-related GTP-binding 95.8 0.0045 1.5E-07 54.0 3.2 22 104-125 36-57 (214)
408 3d3q_A TRNA delta(2)-isopenten 95.8 0.0048 1.6E-07 58.7 3.5 25 103-127 8-32 (340)
409 3h4m_A Proteasome-activating n 95.8 0.0052 1.8E-07 55.9 3.6 29 99-127 48-76 (285)
410 2fu5_C RAS-related protein RAB 95.8 0.0031 1.1E-07 53.0 1.9 22 104-125 10-31 (183)
411 2aka_B Dynamin-1; fusion prote 95.8 0.0044 1.5E-07 56.8 3.0 23 104-126 28-50 (299)
412 3a8t_A Adenylate isopentenyltr 95.8 0.0057 2E-07 58.2 3.8 27 101-127 39-65 (339)
413 2atx_A Small GTP binding prote 95.8 0.0052 1.8E-07 52.2 3.3 22 104-125 20-41 (194)
414 3llu_A RAS-related GTP-binding 95.7 0.0051 1.8E-07 52.7 3.1 24 104-127 22-45 (196)
415 2b6h_A ADP-ribosylation factor 95.7 0.0046 1.6E-07 53.0 2.8 24 101-124 28-51 (192)
416 1ak2_A Adenylate kinase isoenz 95.7 0.0062 2.1E-07 54.1 3.7 27 101-127 15-41 (233)
417 1ltq_A Polynucleotide kinase; 95.7 0.0054 1.8E-07 56.4 3.4 22 103-124 3-24 (301)
418 2v3c_C SRP54, signal recogniti 95.7 0.0028 9.6E-08 62.3 1.4 43 97-144 92-136 (432)
419 2hf9_A Probable hydrogenase ni 95.7 0.0056 1.9E-07 53.6 3.2 25 103-127 39-63 (226)
420 4edh_A DTMP kinase, thymidylat 95.7 0.0061 2.1E-07 54.0 3.5 28 100-127 4-31 (213)
421 3lv8_A DTMP kinase, thymidylat 95.6 0.006 2.1E-07 55.0 3.3 27 101-127 26-52 (236)
422 1ypw_A Transitional endoplasmi 95.6 0.0025 8.5E-08 67.5 0.8 33 95-127 504-536 (806)
423 4djt_A GTP-binding nuclear pro 95.6 0.0029 1E-07 55.0 1.1 22 104-125 13-34 (218)
424 2p65_A Hypothetical protein PF 95.6 0.0054 1.8E-07 51.3 2.7 27 101-127 42-68 (187)
425 4dcu_A GTP-binding protein ENG 95.6 0.0048 1.6E-07 60.8 2.7 23 104-126 25-47 (456)
426 2qmh_A HPR kinase/phosphorylas 95.6 0.0091 3.1E-07 52.7 4.2 33 92-125 25-57 (205)
427 2g3y_A GTP-binding protein GEM 95.6 0.0064 2.2E-07 53.6 3.3 22 104-125 39-60 (211)
428 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0074 2.5E-07 53.9 3.7 27 101-127 38-64 (262)
429 2hup_A RAS-related protein RAB 95.6 0.0067 2.3E-07 52.3 3.3 22 104-125 31-52 (201)
430 3v9p_A DTMP kinase, thymidylat 95.6 0.0053 1.8E-07 55.0 2.7 28 100-127 23-50 (227)
431 2x77_A ADP-ribosylation factor 95.5 0.0045 1.5E-07 52.4 2.0 24 101-124 21-44 (189)
432 3tmk_A Thymidylate kinase; pho 95.5 0.011 3.7E-07 52.6 4.5 28 100-127 3-30 (216)
433 3crm_A TRNA delta(2)-isopenten 95.5 0.007 2.4E-07 57.2 3.5 25 103-127 6-30 (323)
434 3zvl_A Bifunctional polynucleo 95.5 0.0068 2.3E-07 59.1 3.5 30 97-126 253-282 (416)
435 4gzl_A RAS-related C3 botulinu 95.5 0.007 2.4E-07 52.3 3.2 23 103-125 31-53 (204)
436 3exa_A TRNA delta(2)-isopenten 95.5 0.0077 2.6E-07 56.8 3.6 26 102-127 3-28 (322)
437 2r62_A Cell division protease 95.5 0.0021 7.3E-08 58.0 -0.2 31 95-127 39-69 (268)
438 3q3j_B RHO-related GTP-binding 95.5 0.014 4.9E-07 50.8 5.1 23 103-125 28-50 (214)
439 4tmk_A Protein (thymidylate ki 95.5 0.0078 2.7E-07 53.3 3.4 27 101-127 2-28 (213)
440 2yc2_C IFT27, small RAB-relate 95.5 0.0032 1.1E-07 53.9 0.8 22 104-125 22-43 (208)
441 2ocp_A DGK, deoxyguanosine kin 95.5 0.0086 3E-07 53.4 3.6 27 101-127 1-27 (241)
442 1njg_A DNA polymerase III subu 95.5 0.0079 2.7E-07 52.1 3.3 24 104-127 47-70 (250)
443 3umf_A Adenylate kinase; rossm 95.4 0.0078 2.7E-07 53.6 3.2 32 96-127 23-54 (217)
444 1u94_A RECA protein, recombina 95.4 0.01 3.4E-07 56.9 4.1 29 99-127 60-88 (356)
445 2i1q_A DNA repair and recombin 95.4 0.0089 3.1E-07 55.8 3.7 28 98-125 94-121 (322)
446 3ld9_A DTMP kinase, thymidylat 95.4 0.009 3.1E-07 53.4 3.5 28 100-127 19-46 (223)
447 1p5z_B DCK, deoxycytidine kina 95.4 0.0066 2.3E-07 55.0 2.5 28 100-127 22-49 (263)
448 3dm5_A SRP54, signal recogniti 95.3 0.012 4.1E-07 57.9 4.4 39 101-144 99-137 (443)
449 1puj_A YLQF, conserved hypothe 95.2 0.011 3.7E-07 54.7 3.6 26 102-127 120-145 (282)
450 4dkx_A RAS-related protein RAB 95.2 0.018 6.2E-07 50.9 4.9 21 104-124 15-35 (216)
451 3n70_A Transport activator; si 95.2 0.012 4E-07 48.4 3.2 28 100-127 22-49 (145)
452 3p32_A Probable GTPase RV1496/ 95.2 0.014 4.7E-07 55.6 4.2 27 101-127 78-104 (355)
453 2zts_A Putative uncharacterize 95.1 0.013 4.6E-07 51.6 3.9 25 99-123 27-51 (251)
454 3foz_A TRNA delta(2)-isopenten 95.1 0.011 3.9E-07 55.5 3.3 26 102-127 10-35 (316)
455 3syl_A Protein CBBX; photosynt 95.1 0.013 4.4E-07 53.8 3.6 28 100-127 65-92 (309)
456 2z4s_A Chromosomal replication 95.1 0.01 3.5E-07 58.3 3.0 26 102-127 130-155 (440)
457 3sr0_A Adenylate kinase; phosp 95.0 0.013 4.4E-07 51.6 3.3 24 104-127 2-25 (206)
458 1sxj_D Activator 1 41 kDa subu 95.0 0.011 3.7E-07 55.2 2.9 33 95-127 49-83 (353)
459 2orw_A Thymidine kinase; TMTK, 95.0 0.018 6.2E-07 49.6 4.1 27 101-127 2-29 (184)
460 3ec1_A YQEH GTPase; atnos1, at 95.0 0.012 4.2E-07 56.4 3.2 26 101-126 161-186 (369)
461 3gj0_A GTP-binding nuclear pro 95.0 0.0094 3.2E-07 51.9 2.2 23 104-126 17-40 (221)
462 2chg_A Replication factor C sm 94.9 0.014 4.8E-07 49.9 3.1 24 104-127 40-63 (226)
463 2hjg_A GTP-binding protein ENG 94.9 0.011 3.9E-07 57.7 2.8 23 104-126 5-27 (436)
464 3r7w_A Gtpase1, GTP-binding pr 94.8 0.014 4.8E-07 54.3 3.1 24 102-125 3-26 (307)
465 3uk6_A RUVB-like 2; hexameric 94.8 0.024 8.1E-07 53.4 4.8 28 100-127 68-95 (368)
466 3l0i_B RAS-related protein RAB 94.8 0.0034 1.1E-07 53.9 -1.1 22 104-125 35-56 (199)
467 3h2y_A GTPase family protein; 94.8 0.013 4.4E-07 56.2 2.8 26 101-126 159-184 (368)
468 2v1u_A Cell division control p 94.8 0.013 4.6E-07 55.0 2.9 28 100-127 42-69 (387)
469 3geh_A MNME, tRNA modification 94.7 0.011 3.8E-07 58.6 2.3 27 100-126 222-248 (462)
470 3th5_A RAS-related C3 botulinu 93.8 0.0053 1.8E-07 52.8 0.0 22 103-124 31-52 (204)
471 3eph_A TRNA isopentenyltransfe 94.7 0.016 5.6E-07 56.3 3.5 25 103-127 3-27 (409)
472 1lnz_A SPO0B-associated GTP-bi 94.7 0.017 5.8E-07 54.9 3.5 31 95-125 151-181 (342)
473 2x2e_A Dynamin-1; nitration, h 94.7 0.011 3.7E-07 56.2 2.1 23 104-126 33-55 (353)
474 3hws_A ATP-dependent CLP prote 94.7 0.017 5.7E-07 54.8 3.4 27 101-127 50-76 (363)
475 1wxq_A GTP-binding protein; st 94.7 0.015 5.2E-07 56.3 3.2 23 104-126 2-24 (397)
476 3tqf_A HPR(Ser) kinase; transf 94.7 0.026 9E-07 48.6 4.2 29 95-124 10-38 (181)
477 1tue_A Replication protein E1; 94.6 0.019 6.6E-07 50.8 3.3 29 99-127 55-83 (212)
478 1ofh_A ATP-dependent HSL prote 94.6 0.019 6.4E-07 52.4 3.3 26 102-127 50-75 (310)
479 1xwi_A SKD1 protein; VPS4B, AA 94.5 0.021 7E-07 53.6 3.5 27 100-126 43-69 (322)
480 4hlc_A DTMP kinase, thymidylat 94.4 0.024 8.1E-07 49.8 3.5 26 102-127 2-27 (205)
481 3t15_A Ribulose bisphosphate c 94.4 0.023 7.8E-07 52.5 3.5 25 103-127 37-61 (293)
482 1d2n_A N-ethylmaleimide-sensit 94.4 0.02 7E-07 51.8 3.1 27 101-127 63-89 (272)
483 3pvs_A Replication-associated 94.4 0.015 5.1E-07 57.3 2.3 33 95-127 41-75 (447)
484 2qpt_A EH domain-containing pr 94.4 0.019 6.4E-07 58.2 3.0 24 103-126 66-89 (550)
485 1xp8_A RECA protein, recombina 94.3 0.027 9.2E-07 54.1 3.9 28 99-126 71-98 (366)
486 2qgz_A Helicase loader, putati 94.3 0.026 8.8E-07 52.7 3.6 26 102-127 152-177 (308)
487 1g8f_A Sulfate adenylyltransfe 94.3 0.023 7.7E-07 57.0 3.3 28 100-127 393-420 (511)
488 1f5n_A Interferon-induced guan 94.3 0.019 6.6E-07 58.5 2.9 24 103-126 39-62 (592)
489 3eie_A Vacuolar protein sortin 94.2 0.028 9.4E-07 52.5 3.6 27 101-127 50-76 (322)
490 3gmt_A Adenylate kinase; ssgci 94.2 0.027 9.2E-07 50.6 3.4 25 103-127 9-33 (230)
491 3d8b_A Fidgetin-like protein 1 94.2 0.028 9.7E-07 53.3 3.7 28 100-127 115-142 (357)
492 2bjv_A PSP operon transcriptio 94.2 0.037 1.3E-06 49.7 4.3 27 101-127 28-54 (265)
493 2q6t_A DNAB replication FORK h 94.1 0.026 8.8E-07 55.3 3.4 36 92-127 190-225 (444)
494 2hjg_A GTP-binding protein ENG 94.1 0.026 8.8E-07 55.2 3.4 23 104-126 177-199 (436)
495 3sjy_A Translation initiation 94.1 0.026 8.8E-07 54.6 3.3 24 104-127 10-33 (403)
496 1m8p_A Sulfate adenylyltransfe 94.1 0.028 9.6E-07 57.1 3.7 28 100-127 394-421 (573)
497 1mky_A Probable GTP-binding pr 94.0 0.027 9.1E-07 55.1 3.3 22 104-125 3-24 (439)
498 1um8_A ATP-dependent CLP prote 94.0 0.029 9.8E-07 53.4 3.4 26 102-127 72-97 (376)
499 2j69_A Bacterial dynamin-like 94.0 0.028 9.6E-07 58.4 3.6 27 100-126 67-93 (695)
500 2qby_B CDC6 homolog 3, cell di 94.0 0.031 1.1E-06 52.7 3.6 26 102-127 45-70 (384)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.5e-47 Score=366.68 Aligned_cols=216 Identities=14% Similarity=0.151 Sum_probs=175.0
Q ss_pred CCCcEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 67 IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
..++|+++||+++|+.+. .+.+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i 92 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQEL 92 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 356899999999996532 2336 666999999999999999999999999999999999 9999999999998
Q ss_pred CCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
...... .....|+.++|++|++..+..+ |.+|+. ++.... ..+..+.++++.++|+.+||.+
T Consensus 93 ~~~~~~-~~~~~r~~Ig~v~Q~~~l~~~~TV~env~-----------~~~~~~-~~~~~~~~~~v~~lL~~vgL~~---- 155 (366)
T 3tui_C 93 TTLSES-ELTKARRQIGMIFQHFNLLSSRTVFGNVA-----------LPLELD-NTPKDEVKRRVTELLSLVGLGD---- 155 (366)
T ss_dssp SSCCHH-HHHHHHTTEEEECSSCCCCTTSCHHHHHH-----------HHHHHS-CCCHHHHHHHHHHHHHHHTCGG----
T ss_pred CcCCHH-HHHHHhCcEEEEeCCCccCCCCCHHHHHH-----------HHHHhc-CCCHHHHHHHHHHHHHHcCCch----
Confidence 622111 1111134677888877665544 555554 333221 2345667789999999999987
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..++++.+|||||||||+||||| ||||++||+ |+|||+|||
T Consensus 156 -------------~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH 222 (366)
T 3tui_C 156 -------------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222 (366)
T ss_dssp -------------GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+.+.++||||++ |++|++++.|++++++.+|.+++++.++..
T Consensus 223 dl~~~~~~aDrv~v-l~~G~iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 223 EMDVVKRICDCVAV-ISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp CHHHHHHHCSEEEE-EETTEEEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 578899999975 999999999999999999999888887765
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.6e-46 Score=364.53 Aligned_cols=205 Identities=12% Similarity=0.149 Sum_probs=170.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+|+|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 3 ~l~~~~l~~~yg~~---~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~-- 69 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV---VV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND-- 69 (381)
T ss_dssp CEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred EEEEEeEEEEECCE---EE---EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC--
Confidence 59999999999753 24 777999999999999999999999999999999999 999999999999861
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 70 ----~~~~~r~ig~VfQ~~~l~p~l----------tV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~--------- 125 (381)
T 3rlf_A 70 ----TPPAERGVGMVFQSYALYPHL----------SVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAH--------- 125 (381)
T ss_dssp ----CCGGGSCEEEECTTCCCCTTS----------CHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGG---------
T ss_pred ----CCHHHCCEEEEecCCcCCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 112234567777776655544 4444444443322 2345667889999999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
+++++|.+|||||||||+||||| ||||++||. |+|+|+||| +.+
T Consensus 126 --------~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea 197 (381)
T 3rlf_A 126 --------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197 (381)
T ss_dssp --------GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH
T ss_pred --------hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 57999999999999999999999 999999984 899999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||||++ |++|+|++.|++++++..|.+.++..++.
T Consensus 198 ~~~aDri~v-l~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 198 MTLADKIVV-LDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHhCCEEEE-EECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 899999975 99999999999999999998877666654
No 3
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.8e-47 Score=360.13 Aligned_cols=220 Identities=14% Similarity=0.171 Sum_probs=174.2
Q ss_pred hHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 50 DAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
..+++++++.+++..+. ....|+++||+|+|+++.. + |+||||+|++||++||+||||||||||+++
T Consensus 25 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~--v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~l 99 (306)
T 3nh6_A 25 MENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE--T---LQDVSFTVMPGQTLALVGPSGAGKSTILRL 99 (306)
T ss_dssp HHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCE--E---EEEEEEEECTTCEEEEESSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCc--e---eeeeeEEEcCCCEEEEECCCCchHHHHHHH
Confidence 46678887766553221 1235999999999975444 4 777999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+++ |++|+|.++|+++.... . ...|+.++|++|++..|. .+|.+|+.++...
T Consensus 100 l~gl~~-----p~~G~I~i~G~~i~~~~---~-~~~r~~i~~v~Q~~~lf~-----------~Tv~eNi~~~~~~----- 154 (306)
T 3nh6_A 100 LFRFYD-----ISSGCIRIDGQDISQVT---Q-ASLRSHIGVVPQDTVLFN-----------DTIADNIRYGRVT----- 154 (306)
T ss_dssp HTTSSC-----CSEEEEEETTEETTSBC---H-HHHHHTEEEECSSCCCCS-----------EEHHHHHHTTSTT-----
T ss_pred HHcCCC-----CCCcEEEECCEEcccCC---H-HHHhcceEEEecCCccCc-----------ccHHHHHHhhccc-----
Confidence 999999 99999999999986211 0 011335566666655443 3555555554321
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...+++.++++.+++.+.+..+|+||+|.++++ +.+||||||||++||||| ||||++||.
T Consensus 155 --~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~------g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~ 226 (306)
T 3nh6_A 155 --AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGER------GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226 (306)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTT------SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHH
T ss_pred --CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCC------cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 113567788999999999999999999999988 459999999999999999 999999984
Q ss_pred ------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ..+.. ||+|++ |++|+|++.|++++++..
T Consensus 227 ~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~v-l~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 227 RAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILV-IKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEE-EECCEEEEECCHHHHHhc
Confidence 899999999 45655 999965 999999999999998864
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.7e-46 Score=361.01 Aligned_cols=209 Identities=12% Similarity=0.188 Sum_probs=168.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+|+|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 4 ~l~i~~ls~~y~~~~---~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTP---V---LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSKN 72 (359)
T ss_dssp CEEEEEEEEEETTEE---E---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESSS
T ss_pred EEEEEeEEEEECCEE---E---EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECcccc
Confidence 699999999997532 4 777999999999999999999999999999999999 99999999999973100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 73 --~~~~~~~r~ig~vfQ~~~l~p~l----------tV~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~--------- 130 (359)
T 3fvq_A 73 --TNLPVRERRLGYLVQEGVLFPHL----------TVYRNIAYGLGNG-KGRTAQERQRIEAMLELTGISE--------- 130 (359)
T ss_dssp --CBCCGGGSCCEEECTTCCCCTTS----------CHHHHHHTTSTTS-SCCSHHHHHHHHHHHHHHTCGG---------
T ss_pred --cccchhhCCEEEEeCCCcCCCCC----------CHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCCch---------
Confidence 01111234566666665444332 5666666665422 2334667788999999999988
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| +.+
T Consensus 131 --------~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 131 --------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA 202 (359)
T ss_dssp --------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 67999999999999999999999 999999984 899999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||||++ |++|+|++.|++++++.+|...+...++.
T Consensus 203 ~~~aDri~v-l~~G~i~~~g~~~el~~~p~~~~~a~~~g 240 (359)
T 3fvq_A 203 LQYADRIAV-MKQGRILQTASPHELYRQPADLDAALFIG 240 (359)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCSCHHHHHHHS
T ss_pred HHHCCEEEE-EECCEEEEEeCHHHHHhCcccHHHHHhcc
Confidence 899999975 99999999999999999988766555443
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.2e-45 Score=343.46 Aligned_cols=203 Identities=13% Similarity=0.206 Sum_probs=160.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|+++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 5 ~~~l~i~~ls~~y~~~~~--~---L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~ 74 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTH--A---LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDY 74 (275)
T ss_dssp CEEEEEEEEEEECTTSCE--E---EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCC
T ss_pred CcEEEEEEEEEEECCCCe--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCc
Confidence 357999999999976543 4 777999999999999999999999999999999999 999999999999841
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .. .....++.++|++|++... ++..+|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 75 ~-~~-~~~~~~~~ig~v~Q~~~~~---------~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~------- 135 (275)
T 3gfo_A 75 S-RK-GIMKLRESIGIVFQDPDNQ---------LFSASVYQDVSFGAVNM-KLPEDEIRKRVDNALKRTGIEH------- 135 (275)
T ss_dssp S-HH-HHHHHHHSEEEECSSGGGT---------CCSSBHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred c-cc-cHHHHhCcEEEEEcCcccc---------cccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 00 0111134567777765210 11124444444443221 2335666788999999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.++++.+||||||||++||||| ||||++||+ |+|||+||| +
T Consensus 136 ----------~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 136 ----------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp ----------GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred ----------hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 56899999999999999999999 999999984 889999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
.+..+||||++ |++|++++.|++++++..+
T Consensus 206 ~~~~~~drv~~-l~~G~i~~~g~~~~~~~~~ 235 (275)
T 3gfo_A 206 IVPLYCDNVFV-MKEGRVILQGNPKEVFAEK 235 (275)
T ss_dssp SGGGGCSEEEE-EETTEEEEEECHHHHTHHH
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHhcCH
Confidence 78889999965 9999999999999988653
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-44 Score=351.71 Aligned_cols=204 Identities=15% Similarity=0.211 Sum_probs=167.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~-- 69 (362)
T 2it1_A 3 EIKLENIVKKFGNFT---A---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTE-- 69 (362)
T ss_dssp CEEEEEEEEESSSSE---E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred EEEEEeEEEEECCEE---E---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCc--
Confidence 599999999996532 4 777999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+..+ |.+|+. ++.... ..+..+.++++.++++.++|.+
T Consensus 70 ----~~~~~r~ig~v~Q~~~l~~~ltv~eni~-----------~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (362)
T 2it1_A 70 ----LPPKDRNVGLVFQNWALYPHMTVYKNIA-----------FPLELR-KAPREEIDKKVREVAKMLHIDK-------- 125 (362)
T ss_dssp ----SCGGGTTEEEECTTCCCCTTSCHHHHHH-----------HHHHHT-TCCHHHHHHHHHHHHHHTTCTT--------
T ss_pred ----CCHhHCcEEEEecCcccCCCCCHHHHHH-----------HHHHhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111234577777776666554 555554 332211 1234556788999999999988
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| +.
T Consensus 126 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 126 ---------LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp ---------CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+..+||||++ |++|+|++.|++++++.+|.+.++..++.
T Consensus 197 a~~~adri~v-l~~G~i~~~g~~~~~~~~p~~~~~~~~~g 235 (362)
T 2it1_A 197 ALAMADRIAV-IREGEILQVGTPDEVYYKPKYKFVGGFLG 235 (362)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHSB
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHHcC
Confidence 8899999975 99999999999999999887766555543
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1e-44 Score=350.80 Aligned_cols=206 Identities=14% Similarity=0.179 Sum_probs=168.5
Q ss_pred CCcEEEeeeEEEe-CCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y-~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||+++| ++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 12 ~~~l~~~~l~~~y~g~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGAR---S---VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRVT 80 (355)
T ss_dssp CEEEEEEEEEECCTTSTT---C---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT
T ss_pred CceEEEEEEEEEEcCCCE---E---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECC
Confidence 4579999999999 6533 3 777999999999999999999999999999999999 99999999999985
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
. ....++.++|++|+...+..+ |.+|+. ++.... ..+..+.++++.++++.++|.+
T Consensus 81 ~------~~~~~r~ig~v~Q~~~l~~~ltv~eni~-----------~~l~~~-~~~~~~~~~~v~~~l~~~gL~~----- 137 (355)
T 1z47_A 81 D------LPPQKRNVGLVFQNYALFQHMTVYDNVS-----------FGLREK-RVPKDEMDARVRELLRFMRLES----- 137 (355)
T ss_dssp T------CCGGGSSEEEECGGGCCCTTSCHHHHHH-----------HHHHHT-TCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred c------CChhhCcEEEEecCcccCCCCCHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCChh-----
Confidence 1 111234567777776665544 555544 433211 1234556788999999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+|||
T Consensus 138 ------------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 138 ------------YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp ------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred ------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 57999999999999999999999 999999984 899999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.+..+||||++ |++|+|++.|++++++.+|...++..++.
T Consensus 206 ~~~a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~g 247 (355)
T 1z47_A 206 QEEALEVADRVLV-LHEGNVEQFGTPEEVYEKPGTLFVASFIG 247 (355)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHTT
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 578889999975 99999999999999999887766555544
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-45 Score=339.15 Aligned_cols=211 Identities=16% Similarity=0.116 Sum_probs=163.6
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC-
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG- 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~- 147 (346)
++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~~-~--v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGH-E--V---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEETTE-E--E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEECCE-E--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 479999999999753 2 4 777999999999999999999999999999999999 999999999998741
Q ss_pred ----c----ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCC
Q 019066 148 ----T----YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 148 ----~----~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l 218 (346)
. .........++.++|++|+...+..+ |.+|+.+... . ....+....++++.++++.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~----------~-~~~~~~~~~~~~~~~~l~~~~L 142 (262)
T 1b0u_A 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI----------Q-VLGLSKHDARERALKYLAKVGI 142 (262)
T ss_dssp ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH----------H-TTCCCHHHHHHHHHHHHHHTTC
T ss_pred ccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHH----------H-hcCCCHHHHHHHHHHHHHHcCC
Confidence 0 00000001123567777776555443 5555543210 1 1112234556788999999999
Q ss_pred Ccccccccceeeeeechhhh-cccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------Cce
Q 019066 219 EPSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 272 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~-~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~t 272 (346)
.+ . +++++.+||||||||++||||| ||||++||+ |+|
T Consensus 143 ~~-----------------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~t 205 (262)
T 1b0u_A 143 DE-----------------RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 205 (262)
T ss_dssp CH-----------------HHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred Cc-----------------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 88 5 6899999999999999999999 999999984 899
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
||+||| +.+..+|||+++ |++|++++.|++++++..+..++++.++
T Consensus 206 vi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 253 (262)
T 1b0u_A 206 MVVVTHEMGFARHVSSHVIF-LHQGKIEEEGDPEQVFGNPQSPRLQQFL 253 (262)
T ss_dssp EEEECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred EEEEeCCHHHHHHhCCEEEE-EECCEEEEeCCHHHHHhCcchHHHHHHH
Confidence 999999 567889999964 9999999999999998877665544443
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-44 Score=351.25 Aligned_cols=205 Identities=13% Similarity=0.180 Sum_probs=166.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~-- 69 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVK---A---VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND-- 69 (359)
T ss_dssp CEEEEEEEEEETTEE---E---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred EEEEEEEEEEECCEE---E---EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC--
Confidence 599999999997532 4 777999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 70 ----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~--------- 125 (359)
T 2yyz_A 70 ----IPPKYREVGMVFQNYALYPHM----------TVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDN--------- 125 (359)
T ss_dssp ----SCGGGTTEEEECSSCCCCTTS----------CHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGG---------
T ss_pred ----CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 111234567777766555443 4555555543221 1123344578899999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++++.+|||||||||+||||| ||||++||. |.|+|+||| +.+
T Consensus 126 --------~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 197 (359)
T 2yyz_A 126 --------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA 197 (359)
T ss_dssp --------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 57999999999999999999999 999999984 899999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|+|++.|++++++.+|.+.++..++.
T Consensus 198 ~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~g 235 (359)
T 2yyz_A 198 MTMASRIAV-FNQGKLVQYGTPDEVYDSPKNMFVASFIG 235 (359)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 889999975 99999999999999999887766555543
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=8.7e-45 Score=338.53 Aligned_cols=207 Identities=14% Similarity=0.187 Sum_probs=162.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. .
T Consensus 23 ~~l~i~~l~~~y~~~~---v---L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~-~ 90 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLE---V---LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLK-A 90 (263)
T ss_dssp CSEEEEEEEEEETTEE---E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESS-S
T ss_pred heEEEEeEEEEECCEE---E---EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECC-C
Confidence 3799999999996532 4 777999999999999999999999999999999999 99999999999874 1
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
... .....++.++|++|+...+..+ |.+|+.+ +............++++.++++.++|.+
T Consensus 91 ~~~-~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~L~~------- 151 (263)
T 2olj_A 91 KDT-NLNKVREEVGMVFQRFNLFPHMTVLNNITL-----------APMKVRKWPREKAEAKAMELLDKVGLKD------- 151 (263)
T ss_dssp TTC-CHHHHHHHEEEECSSCCCCTTSCHHHHHHH-----------HHHHTSCCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred ccc-cHHHHhCcEEEEeCCCcCCCCCCHHHHHHH-----------HHHHHcCCCHHHHHHHHHHHHHHCCCch-------
Confidence 100 1011133567777776555443 5555543 2110111223445678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||+ |+|||+||| +.
T Consensus 152 ----------~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 221 (263)
T 2olj_A 152 ----------KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221 (263)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 56899999999999999999999 999999984 899999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
+.++||++++ |++|++++.|++++++..+..++++.
T Consensus 222 ~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~ 257 (263)
T 2olj_A 222 AREVGDRVLF-MDGGYIIEEGKPEDLFDRPQHERTKA 257 (263)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHHH
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhCcccHHHHH
Confidence 7889999964 99999999999999988766554443
No 11
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-44 Score=349.54 Aligned_cols=212 Identities=14% Similarity=0.208 Sum_probs=168.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++... .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 3 ~l~i~~l~~~y~~~~~-~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKV-VA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEGGGTE-EE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEECCEee-ee---EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECcccc
Confidence 6999999999975331 03 778999999999999999999999999999999999 99999999999874100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 74 -~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~--------- 132 (353)
T 1oxx_K 74 -KLIVPPEDRKIGMVFQTWALYPNL----------TAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHH--------- 132 (353)
T ss_dssp -EESSCGGGSCEEEEETTSCCCTTS----------CHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGG---------
T ss_pred -cccCChhhCCEEEEeCCCccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 000111234566666665554433 5555665554322 2234556788999999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| +.+
T Consensus 133 --------~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 204 (353)
T 1oxx_K 133 --------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI 204 (353)
T ss_dssp --------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56999999999999999999999 999999985 899999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|+|++.|++++++.+|...++..++.
T Consensus 205 ~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~g 242 (353)
T 1oxx_K 205 FAIADRVGV-LVKGKLVQVGKPEDLYDNPVSIQVASLIG 242 (353)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHHS
T ss_pred HHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 889999975 99999999999999999887766555554
No 12
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.1e-44 Score=351.04 Aligned_cols=210 Identities=14% Similarity=0.152 Sum_probs=167.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~ 71 (372)
T 1g29_1 3 GVRLVDVWKVFGEVT---A---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADPE 71 (372)
T ss_dssp EEEEEEEEEEETTEE---E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEGG
T ss_pred EEEEEeEEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECcccc
Confidence 599999999996532 4 777999999999999999999999999999999999 99999999999874100
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
........++.++|++|+...+..+ |.+|+. ++.... ..+..+.++++.++++.++|.+
T Consensus 72 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~-----------~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 131 (372)
T 1g29_1 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA-----------FPLKLR-KVPRQEIDQRVREVAELLGLTE-------- 131 (372)
T ss_dssp GTEECCGGGSSEEEECSCCCCCTTSCHHHHHH-----------HHHHHT-TCCHHHHHHHHHHHHHHHTCGG--------
T ss_pred ccccCCHhHCCEEEEeCCCccCCCCCHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHCCCch--------
Confidence 0000111234577777776665544 555554 433211 1234556788999999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| +.
T Consensus 132 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 132 ---------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp ---------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 57999999999999999999999 999999984 899999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+..+|||+++ |++|+|++.|++++++.+|.+.++..++.
T Consensus 203 a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~g 241 (372)
T 1g29_1 203 AMTMGDRIAV-MNRGVLQQVGSPDEVYDKPANTFVAGFIG 241 (372)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred HHHhCCEEEE-EeCCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 8889999975 99999999999999999887766555543
No 13
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.9e-44 Score=351.02 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=163.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 77 (372)
T 1v43_A 10 VEVKLENLTKRFGNFT---A---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY- 77 (372)
T ss_dssp CCEEEEEEEEEETTEE---E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred eeEEEEEEEEEECCEE---E---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC-
Confidence 3699999999997532 4 777999999999999999999999999999999999 999999999999851
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.++|++|+. .+++. +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 78 -----~~~~~r~ig~v~Q~~-----------~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 133 (372)
T 1v43_A 78 -----LPPKDRNISMVFQSY-----------AVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------- 133 (372)
T ss_dssp -----SCGGGGTEEEEEC-----------------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred -----CChhhCcEEEEecCc-----------ccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 111123455555554 44443 6667776664322 2234556788999999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
++++++.+|||||||||+||||| ||||++||. |.|+|+||| +
T Consensus 134 ----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 134 ----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp ----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 57999999999999999999999 999999984 899999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+..+||||++ |++|+|++.|++++++.+|...++..++.
T Consensus 204 ~a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~a~~~g 243 (372)
T 1v43_A 204 EAMTMGDRIAV-MNRGQLLQIGSPTEVYLRPNSVFVATFIG 243 (372)
T ss_dssp HHHHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHhCCEEEE-EECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 78889999965 99999999999999999887766555543
No 14
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.5e-44 Score=345.12 Aligned_cols=201 Identities=13% Similarity=0.205 Sum_probs=165.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~--~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 66 (348)
T 3d31_A 1 MIEIESLSRKWKNF--S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (348)
T ss_dssp CEEEEEEEEECSSC--E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEECCE--E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCC--
Confidence 58999999999764 3 888999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+..+ |.+|+.+ +....+ .+.. +++.++++.++|.+
T Consensus 67 ----~~~~~r~ig~v~Q~~~l~~~ltv~enl~~-----------~~~~~~-~~~~---~~v~~~l~~~~L~~-------- 119 (348)
T 3d31_A 67 ----LSPEKHDIAFVYQNYSLFPHMNVKKNLEF-----------GMRMKK-IKDP---KRVLDTARDLKIEH-------- 119 (348)
T ss_dssp ----SCHHHHTCEEECTTCCCCTTSCHHHHHHH-----------HHHHHC-CCCH---HHHHHHHHHTTCTT--------
T ss_pred ----CchhhCcEEEEecCcccCCCCCHHHHHHH-----------HHHHcC-CCHH---HHHHHHHHHcCCch--------
Confidence 111134567777776666554 5555543 332111 1122 67889999999988
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| ++
T Consensus 120 ---------~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 120 ---------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp ---------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 57999999999999999999999 999999984 899999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+..+|||+++ |++|++++.|++++++.+|...++..++..
T Consensus 191 ~~~~adri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 230 (348)
T 3d31_A 191 ARIMADRIAV-VMDGKLIQVGKPEEIFEKPVEGRVASFVGF 230 (348)
T ss_dssp HHHHCSEEEE-ESSSCEEEEECHHHHHSSCCTTHHHHHHCS
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhCcccHHHHHhcCC
Confidence 8899999965 999999999999999999988777666653
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7.1e-44 Score=327.17 Aligned_cols=202 Identities=18% Similarity=0.163 Sum_probs=153.6
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|+++. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 589999999997543 1225 777999999999999999999999999999999999 9999999999998621
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
...+.....++.++|++|++..+..+ |.+|+ .++.... ......+..+++.++++.+++.+.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---- 137 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENV-----------ELPLIFKYRGAMSGEERRKRALECLKMAELEER---- 137 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTSCHHHHH-----------HHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----
T ss_pred CHHHHHHHhhccEEEEecCCccCCCCcHHHHH-----------HHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----
Confidence 11111111233467777776555443 55554 4332211 122345667889999999999862
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG 279 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~ 279 (346)
..++++.+||||||||++||||| ||||++||+ |+|+|+|||+
T Consensus 138 ------------~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 138 ------------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp ------------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 24889999999999999999999 999999984 8999999992
Q ss_pred -hhhccccEEEEEecCCeEeecCCccccc
Q 019066 280 -DLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 280 -~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
.+..+|||+++ |++|++++.++++++.
T Consensus 206 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 206 INVARFGERIIY-LKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHTTSSEEEE-EETTEEEEEEECC---
T ss_pred HHHHHhCCEEEE-EECCEEEEEcChhhhc
Confidence 35678999965 9999999998877653
No 16
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.6e-45 Score=402.08 Aligned_cols=226 Identities=14% Similarity=0.136 Sum_probs=180.4
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
.+.+++.++++.+++..+. ....|+|+||+|+|+++....+ |+||||+|++||++|||||||||||||+
T Consensus 1046 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1046 FAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp HHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCEEEEECSTTSSTTSHH
T ss_pred HHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCEEEEECCCCChHHHHH
Confidence 4456788888776654332 1225999999999975432224 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCccccccccc--CCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTI--PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 197 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~--~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~ 197 (346)
++|.|+|+ |++|+|++||.|+. .... -|+++++++|++..| ..++++||.++..
T Consensus 1123 ~lL~rl~~-----p~~G~I~iDG~di~------~i~~~~lR~~i~~V~Qdp~LF-----------~gTIreNI~~gld-- 1178 (1321)
T 4f4c_A 1123 ALLERFYD-----TLGGEIFIDGSEIK------TLNPEHTRSQIAIVSQEPTLF-----------DCSIAENIIYGLD-- 1178 (1321)
T ss_dssp HHHTTSSC-----CSSSEEEETTEETT------TBCHHHHHTTEEEECSSCCCC-----------SEEHHHHHSSSSC--
T ss_pred HHHhcCcc-----CCCCEEEECCEEhh------hCCHHHHHhheEEECCCCEee-----------CccHHHHHhccCC--
Confidence 99999999 99999999999997 2211 134455555555544 4456666665432
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC
Q 019066 198 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 268 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 268 (346)
+....++++.++++.+++++++..+|+||+|.|||+|. +||||||||++||||| |||||+||
T Consensus 1179 ---~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~------~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD 1249 (1321)
T 4f4c_A 1179 ---PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGT------QLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249 (1321)
T ss_dssp ---TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC------SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT
T ss_pred ---CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCc------ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC
Confidence 11234577999999999999999999999999999964 9999999999999999 99999998
Q ss_pred C---------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 269 D---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 269 ~---------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
. ++|+|+|||+ .....||||+| |++|+|+|.|+|+++++++
T Consensus 1250 ~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~V-ld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1250 TESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAV-VSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp SHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEE-ESSSSEEEEECHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 4 8999999993 33345999965 9999999999999999874
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.5e-44 Score=330.40 Aligned_cols=196 Identities=13% Similarity=0.184 Sum_probs=153.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK---A---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETTEE---E---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECCEe---e---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh-ccC-----------CChHHHHHHHHHHHHH
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV-IRR-----------SDSSSLRNRMRCKAHK 215 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~-~~~-----------~~~~~~~~~~~~~l~~ 215 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... ... ......++++.++++.
T Consensus 74 ~~---~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 140 (257)
T 1g6h_A 74 KE---PAELYHYGIVRTFQTPQPLKEM----------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140 (257)
T ss_dssp CC---HHHHHHHTEEECCCCCGGGGGS----------BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHH
T ss_pred CC---HHHHHhCCEEEEccCCccCCCC----------cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHH
Confidence 10 0011122455666654433222 555665554321 000 1234456788999999
Q ss_pred cCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C
Q 019066 216 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 270 (346)
Q Consensus 216 ~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g 270 (346)
+++.+ ..++++.+||||||||++||||| ||||++||+ |
T Consensus 141 ~~l~~-----------------~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 141 LKLSH-----------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp TTCGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCch-----------------hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 99987 56889999999999999999999 999999984 8
Q ss_pred ceEEEEec--hhhhccccEEEEEecCCeEeecCCccc
Q 019066 271 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 271 ~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
+|||+||| +.+..+|||+++ |++|++++.|++++
T Consensus 204 ~tvi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLDIVLNYIDHLYV-MFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCSTTGGGCSEEEE-EETTEEEEEEESHH
T ss_pred CEEEEEecCHHHHHHhCCEEEE-EECCEEEEEeCHHH
Confidence 99999999 578889999965 99999999998887
No 18
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-43 Score=321.33 Aligned_cols=203 Identities=17% Similarity=0.222 Sum_probs=163.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++ + |+||||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 64 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP-- 64 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 4899999999964 3 7789999999 9999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.+++.+
T Consensus 65 ----~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~--------- 118 (240)
T 2onk_A 65 ----LPPERRGIGFVPQDYALFPHL----------SVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAH--------- 118 (240)
T ss_dssp ----SCTTTSCCBCCCSSCCCCTTS----------CHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTT---------
T ss_pred ----CchhhCcEEEEcCCCccCCCC----------cHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHH---------
Confidence 111244677777776554433 4445554432211 11223577889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||+ |+|+|++|| +.+
T Consensus 119 --------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 119 --------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp --------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56889999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 324 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 324 (346)
..+||++++ |++|++++.|++++++..+ +.+++.++...+.
T Consensus 191 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~-~~~~~~~~~~~~~ 231 (240)
T 2onk_A 191 AMLADEVAV-MLNGRIVEKGKLKELFSAK-NGEVAEFLSARNL 231 (240)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSC-CSSHHHHGGGHHH
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHHhCc-hHHHHHHhcCCcc
Confidence 889999964 9999999999999999888 7777766655443
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1e-43 Score=331.84 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=155.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~~---v---L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA---L---INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEETTEE---E---EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeCCee---E---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 45899999999997633 4 777999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.... . .++.+++++|+...+..+ ++.+|+.++.... .....++++.++++.+++.+
T Consensus 78 ~~~~---~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~------- 133 (266)
T 4g1u_C 78 WQPK---A-LARTRAVMRQYSELAFPF----------SVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLA------- 133 (266)
T ss_dssp SCHH---H-HHHHEEEECSCCCCCSCC----------BHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCST-------
T ss_pred CCHH---H-HhheEEEEecCCccCCCC----------CHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChh-------
Confidence 1110 0 122356666665443222 4555555543321 12345678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------------CccccCCCC-----------------CceEEE
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVV 275 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~-----------------g~tvii 275 (346)
..++++.+||||||||++||||| ||||++||+ ++|+|+
T Consensus 134 ----------~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~ 203 (266)
T 4g1u_C 134 ----------LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203 (266)
T ss_dssp ----------TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56889999999999999999997 999999984 579999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
||| +.+..+|||+++ |++|++++.|++++++.
T Consensus 204 vtHdl~~~~~~~d~v~v-l~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 204 VLHDLNLAALYADRIML-LAQGKLVACGTPEEVLN 237 (266)
T ss_dssp ECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHCC
T ss_pred EEcCHHHHHHhCCEEEE-EECCEEEEEcCHHHHhC
Confidence 999 578889999965 99999999999998864
No 20
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.4e-44 Score=329.39 Aligned_cols=205 Identities=15% Similarity=0.137 Sum_probs=160.4
Q ss_pred cEEEeeeEEEeC-CCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~-~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
-|+++||+|+|+ ++.. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 7 ~~~~~~l~~~y~~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV--I---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEEEESSTTSCE--E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTS
T ss_pred ceeEEEEEEEeCCCCcc--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC
Confidence 489999999993 2333 4 777999999999999999999999999999999999 9999999999997511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. ... .++.++|++|++..+ ..++.+|+.++.. .. .++++.++++.+++.+....+|+|
T Consensus 77 ~---~~~-~~~~i~~v~Q~~~l~-----------~~tv~enl~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~g 134 (247)
T 2ff7_A 77 D---PNW-LRRQVGVVLQDNVLL-----------NRSIIDNISLANP---GM----SVEKVIYAAKLAGAHDFISELREG 134 (247)
T ss_dssp C---HHH-HHHHEEEECSSCCCT-----------TSBHHHHHTTTCT---TC----CHHHHHHHHHHHTCHHHHHTSTTG
T ss_pred C---HHH-HHhcEEEEeCCCccc-----------cccHHHHHhccCC---CC----CHHHHHHHHHHhChHHHHHhCcch
Confidence 0 000 123456666655433 2355566655421 11 134577889999998888888888
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
+++.++++ +.+||||||||++||||| ||||++||. |+|+|+||| +.+.
T Consensus 135 l~~~~~~~------~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 135 YNTIVGEQ------GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp GGCBCSTT------TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hhhhhhCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 88877655 679999999999999999 999999984 899999999 4454
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
.||++++ |++|++++.|++++++..|...+
T Consensus 209 -~~d~v~~-l~~G~i~~~g~~~~l~~~~~~~~ 238 (247)
T 2ff7_A 209 -NADRIIV-MEKGKIVEQGKHKELLSEPESLY 238 (247)
T ss_dssp -TSSEEEE-EETTEEEEEECHHHHHTSTTCHH
T ss_pred -hCCEEEE-EECCEEEEECCHHHHHhCCchHH
Confidence 5999964 99999999999999987764333
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.8e-43 Score=323.49 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=159.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++. . + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 13 ~~~l~i~~l~~~y~~~-~--v---l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 81 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKK-E--I---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVE 81 (256)
T ss_dssp -CCEEEEEEEEEETTE-E--E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTT
T ss_pred CCeEEEEEEEEEECCE-E--E---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCc
Confidence 5689999999999653 2 4 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. . ...++.++|++|+...+..+ |.+|+.++... . .......++++.++++.++|.+
T Consensus 82 --~--~-~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~-----------~-~~~~~~~~~~~~~~l~~~gL~~------ 138 (256)
T 1vpl_A 82 --E--P-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF-----------Y-ASSSSEIEEMVERATEIAGLGE------ 138 (256)
T ss_dssp --C--H-HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH-----------H-CCCHHHHHHHHHHHHHHHCCGG------
T ss_pred --c--H-HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHH-----------c-CCChHHHHHHHHHHHHHCCCch------
Confidence 0 0 11134578888887666554 66666543211 1 1123344577889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 139 -----------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 139 -----------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp -----------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 56889999999999999999999 999999984 899999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+||++++ |++|++++.|++++++..
T Consensus 208 ~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 208 EVEFLCDRIAL-IHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHTTTCSEEEE-EETTEEEEEEEHHHHHHH
T ss_pred HHHHHCCEEEE-EECCEEEEecCHHHHHHh
Confidence 68889999964 999999999999888654
No 22
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-43 Score=324.64 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=159.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|+++.. + |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ml~~~~l~~~y~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 70 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ--I---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNIS 70 (243)
T ss_dssp CEEEEEEEECSSSSSC--S---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTTS
T ss_pred CEEEEEEEEEeCCCCc--e---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhCC
Confidence 4899999999943333 3 777999999999999999999999999999999999 99999999999975110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|++..+.. ++.+|+.++... . ..++++.++++.+++.+.+.++|+|+
T Consensus 71 ----~~~~~~~i~~v~q~~~l~~~-----------tv~enl~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~gl 129 (243)
T 1mv5_A 71 ----LENWRSQIGFVSQDSAIMAG-----------TIRENLTYGLEG--D----YTDEDLWQVLDLAFARSFVENMPDQL 129 (243)
T ss_dssp ----CSCCTTTCCEECCSSCCCCE-----------EHHHHTTSCTTS--C----SCHHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred ----HHHHHhhEEEEcCCCccccc-----------cHHHHHhhhccC--C----CCHHHHHHHHHHhChHHHHHhCccch
Confidence 11124456777777654432 455555554210 1 11345778899999999888889999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
++.+++. +.+||||||||++||||| ||||++||+ |+|+|+||| +.+.
T Consensus 130 ~~~~~~~------~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~- 202 (243)
T 1mv5_A 130 NTEVGER------GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV- 202 (243)
T ss_dssp GCEESTT------SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-
T ss_pred hchhccC------cCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-
Confidence 8887765 679999999999999999 999999985 899999999 3454
Q ss_pred cccEEEEEecCCeEeecCCcccccc
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.|||+++ |++|++++.|++++++.
T Consensus 203 ~~d~v~~-l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 203 DADKIYF-IEKGQITGSGKHNELVA 226 (243)
T ss_dssp HCSEEEE-EETTEECCCSCHHHHHH
T ss_pred hCCEEEE-EECCEEEEeCCHHHHHh
Confidence 5999964 99999999999888765
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.6e-43 Score=319.46 Aligned_cols=192 Identities=18% Similarity=0.110 Sum_probs=150.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~y~~~-~--~---l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRGY-E--I---LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETTE-E--E---EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECCE-e--e---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 479999999999753 2 4 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
...+...+.++.++|++|+...+..+ |.+|+.+. .... .......++++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP-----------MLKM-GKPKKEAKERGEYLLSELGLGD------- 132 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH-----------HHHT-TCCHHHHHHHHHHHHHHTTCTT-------
T ss_pred CHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhH-----------HHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 10000011123567788776555443 55555432 2111 1123445678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. |+|+|+||| +.
T Consensus 133 ----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 133 ----------KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp ----------CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 46889999999999999999999 999999984 899999999 34
Q ss_pred hhccccEEEEEecCCeEeecCC
Q 019066 281 LLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~ 302 (346)
+ .+||++++ |++|++++.|+
T Consensus 203 ~-~~~d~v~~-l~~G~i~~~g~ 222 (224)
T 2pcj_A 203 A-ELTHRTLE-MKDGKVVGEIT 222 (224)
T ss_dssp H-TTSSEEEE-EETTEEEEEEE
T ss_pred H-HhCCEEEE-EECCEEEEEee
Confidence 5 78999964 99999999875
No 24
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.3e-43 Score=364.46 Aligned_cols=224 Identities=12% Similarity=0.147 Sum_probs=175.0
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
...+|+.++++.+++..+. ...+|+++||+|+|+++ .. + |+|+||+|++||+++|+||||||||||+|
T Consensus 313 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~--~---l~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 313 AACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKP--A---LSHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCcc--c---cccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 3346677777765543211 13469999999999753 33 4 67799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|.++|+++.... . ...|+.+++++|+ +.++..++.+|+.++..
T Consensus 388 ~l~g~~~-----p~~G~i~~~g~~~~~~~---~-~~~~~~i~~v~Q~-----------~~l~~~tv~eni~~~~~----- 442 (582)
T 3b5x_A 388 LFTRFYD-----VDSGSICLDGHDVRDYK---L-TNLRRHFALVSQN-----------VHLFNDTIANNIAYAAE----- 442 (582)
T ss_pred HHhcCCC-----CCCCEEEECCEEhhhCC---H-HHHhcCeEEEcCC-----------CccccccHHHHHhccCC-----
Confidence 9999999 99999999999985100 0 0113344555554 44445567777776531
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
....++++.++++.+++.+.+.++|+||+|.++++ +.+||||||||++||||| ||||++||+
T Consensus 443 -~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~------~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 443 -GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN------GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred -CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCC------CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 01124668899999999999999999999999988 559999999999999999 999999984
Q ss_pred -------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+|||+ .....||+|+ +|++|++++.|++++++..
T Consensus 516 ~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 516 ERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL-VVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 8999999993 3334699996 4999999999999999865
No 25
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.9e-44 Score=398.22 Aligned_cols=226 Identities=12% Similarity=0.135 Sum_probs=180.8
Q ss_pred hhhHHHHHHhhhhhhhhccC---------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTRI---------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 118 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTL 118 (346)
.+..|+.++++.+++..+.. ...|+++||+|+|++.....+ |+||||+|++|+++|||||||||||||
T Consensus 384 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~sGsGKSTl 460 (1321)
T 4f4c_A 384 GAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGSSGCGKSTI 460 (1321)
T ss_dssp HHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEECSSSCHHHH
T ss_pred HHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce---eeceEEeecCCcEEEEEecCCCcHHHH
Confidence 34567899998776543321 225999999999975432224 777999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 119 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 119 l~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
+++|.|+|+ |++|+|.+||.+++ . +.....|..+++|+|++.++..++++||.++..
T Consensus 461 l~ll~~~~~-----~~~G~I~idG~~i~------~---------~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~--- 517 (1321)
T 4f4c_A 461 ISLLLRYYD-----VLKGKITIDGVDVR------D---------INLEFLRKNVAVVSQEPALFNCTIEENISLGKE--- 517 (1321)
T ss_dssp HHHHTTSSC-----CSEEEEEETTEETT------T---------SCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT---
T ss_pred HHHhccccc-----cccCcccCCCccch------h---------ccHHHHhhcccccCCcceeeCCchhHHHhhhcc---
Confidence 999999999 99999999999987 1 222233333444444444445556666665532
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
...++++.++++.+++++++..+|+||+|+|||+|. +||||||||++||||+ |||||+||.
T Consensus 518 ----~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~------~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 518 ----GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGT------QLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp ----TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSC------CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred ----cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCC------CCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 223577999999999999999999999999999965 9999999999999999 999999995
Q ss_pred ---------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 ---------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|+|+|+||| -...+.||+|+ +|++|+|++.|+|++++...
T Consensus 588 ~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Ii-vl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 588 ESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLII-SCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEE-EEETTEEEEEECHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEE-EeeCCeeeccCCHHHHHHhh
Confidence 899999999 34556799996 59999999999999998763
No 26
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-43 Score=323.58 Aligned_cols=197 Identities=15% Similarity=0.223 Sum_probs=154.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~y~~~-~--v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAI-H--A---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETTE-E--E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECCe-e--E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 4579999999999753 2 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcC-CCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~ 226 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... .......++++.++++.++ +.+
T Consensus 73 ~~---~~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~------ 131 (240)
T 1ji0_A 73 KP---AHVINRMGIALVPEGRRIFPEL----------TVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKE------ 131 (240)
T ss_dssp CC---HHHHHHTTEEEECSSCCCCTTS----------BHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHT------
T ss_pred CC---HHHHHhCCEEEEecCCccCCCC----------cHHHHHHHhhhc--CCCHHHHHHHHHHHHHHcccHhh------
Confidence 10 1111123467777776555443 344444443211 1112345567888899994 876
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||+ |+|+|+||| +
T Consensus 132 -----------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 132 -----------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp -----------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 46889999999999999999999 999999984 899999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCcccccc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.+.++|||+++ |++|++++.|++++++.
T Consensus 201 ~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 201 GALKVAHYGYV-LETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHCSEEEE-EETTEEEEEEEHHHHHT
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHhc
Confidence 68889999964 99999999999888764
No 27
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.1e-44 Score=365.70 Aligned_cols=224 Identities=12% Similarity=0.122 Sum_probs=176.0
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
.+.+|+.++++.+++..+. ....|+++||+|+|+++.. .+ |+|+||+|++||++||+||||||||||+
T Consensus 309 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~-~~---l~~isl~i~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 309 ASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEA-PI---LKDINLSIEKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp HHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSC-CS---EEEEEEEECTTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCC-cc---eeeeEEEECCCCEEEEECCCCChHHHHH
Confidence 3456788888776553221 1235999999999975432 14 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
++|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+. .++.+|+.++..
T Consensus 385 ~~l~g~~~-----p~~G~i~~~g~~~~~~~---~-~~~r~~i~~v~Q~~~l~~-----------~tv~eni~~~~~---- 440 (578)
T 4a82_A 385 NLIPRFYD-----VTSGQILIDGHNIKDFL---T-GSLRNQIGLVQQDNILFS-----------DTVKENILLGRP---- 440 (578)
T ss_dssp TTTTTSSC-----CSEEEEEETTEEGGGSC---H-HHHHHTEEEECSSCCCCS-----------SBHHHHHGGGCS----
T ss_pred HHHhcCCC-----CCCcEEEECCEEhhhCC---H-HHHhhheEEEeCCCccCc-----------ccHHHHHhcCCC----
Confidence 99999999 99999999999986110 0 011334566666655444 355556555421
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
...++++.++++.+++.+.+..+|+|++|.+|+++ .+||||||||++||||| |||||+||+
T Consensus 441 ---~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g------~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 441 ---TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG------VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511 (578)
T ss_dssp ---SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG------TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC------CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 11235678889999999999999999999999995 49999999999999999 999999984
Q ss_pred --------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 --------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 --------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| +.+ ..||||++ |++|++++.|++++++..+
T Consensus 512 ~~~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~~-l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 512 SESIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVV-IENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEE-EETTEEEEEECHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 899999999 345 45999964 9999999999999998763
No 28
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.4e-44 Score=369.01 Aligned_cols=222 Identities=15% Similarity=0.180 Sum_probs=174.5
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+.+|+.++++.+++.... ....|+++||+|+|+++.. + |+|+||+|++||++||+||||||||||++
T Consensus 325 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~--~---l~~isl~i~~G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 325 ASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKP--V---LKDITFHIKPGQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp HHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSSC--S---CCSEEEECCTTCEEEEECCTTSSTTHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCc--c---ccceEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 3456788888766553221 1235999999999976443 4 67799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+. .++.+|+.++..
T Consensus 400 ~l~g~~~-----p~~G~i~~~g~~i~~~~---~-~~~r~~i~~v~Q~~~lf~-----------~tv~eni~~~~~----- 454 (598)
T 3qf4_B 400 LLMRFYD-----VDRGQILVDGIDIRKIK---R-SSLRSSIGIVLQDTILFS-----------TTVKENLKYGNP----- 454 (598)
T ss_dssp HHTTSSC-----CSEEEEEETTEEGGGSC---H-HHHHHHEEEECTTCCCCS-----------SBHHHHHHSSST-----
T ss_pred HHhcCcC-----CCCeEEEECCEEhhhCC---H-HHHHhceEEEeCCCcccc-----------ccHHHHHhcCCC-----
Confidence 9999999 99999999999986110 0 011334556666654443 355566655421
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...++++.++++.+++.+.+..+|+|++|.+|+++. +||||||||++||||| |||||+||.
T Consensus 455 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~------~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 455 --GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGE------DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp --TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHT------TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred --CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCC------CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 111245678899999999999999999999999954 9999999999999999 999999984
Q ss_pred -------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+||| +.+. .||+|++ |++|++++.|++++++..
T Consensus 527 ~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~-l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 527 EKSIQAAMWKLMEGKTSIIIAHRLNTIK-NADLIIV-LRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHHHHHHTTSEEEEESCCTTHHH-HCSEEEE-ECSSSEEECSCHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEE-EECCEEEEECCHHHHHhC
Confidence 899999999 4554 4999964 999999999999999875
No 29
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.1e-43 Score=363.78 Aligned_cols=232 Identities=13% Similarity=0.096 Sum_probs=172.5
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCc-EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSL-TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 118 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~-l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTL 118 (346)
.+.+|+.++++.+++..+. .... |+++||+|+|+++....+ |+|+||+|++||++||+||||||||||
T Consensus 310 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~v---l~~isl~i~~G~~~~ivG~sGsGKSTL 386 (595)
T 2yl4_A 310 GAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPI---FQDFSLSIPSGSVTALVGPSGSGKSTV 386 (595)
T ss_dssp HHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEE---EEEEEEEECTTCEEEEECCTTSSSTHH
T ss_pred HHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECCCCCCHHHH
Confidence 3456778888765543211 1234 999999999975321124 777999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 119 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 119 l~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
+++|+|+++ |++|+|.++|+++.... ... .|+.+++++|++..+. .++.+|+.++....
T Consensus 387 l~~l~g~~~-----p~~G~i~~~g~~i~~~~---~~~-~~~~i~~v~Q~~~l~~-----------~tv~eni~~~~~~~- 445 (595)
T 2yl4_A 387 LSLLLRLYD-----PASGTISLDGHDIRQLN---PVW-LRSKIGTVSQEPILFS-----------CSIAENIAYGADDP- 445 (595)
T ss_dssp HHHHTTSSC-----CSEEEEEETTEETTTBC---HHH-HHHSEEEECSSCCCCS-----------SBHHHHHHTTSSST-
T ss_pred HHHHhcCcC-----CCCcEEEECCEEhhhCC---HHH-HHhceEEEccCCcccC-----------CCHHHHHhhcCCCc-
Confidence 999999999 99999999999986110 001 1334566666655443 35555555543210
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
....++++.++++.+++.+.+.++|+|++|.+|++ +.+||||||||++||||| ||||++||+
T Consensus 446 ---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~------~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 446 ---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK------GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp ---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS------SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred ---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCC------CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 01224678899999999999999999999999998 559999999999999999 999999984
Q ss_pred ---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 270 ---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 270 ---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
++|+|+||| +.+ ..||||+ +|++|++++.|++++++.++...|
T Consensus 517 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~~d~i~-~l~~G~i~~~g~~~~l~~~~~~~~ 576 (595)
T 2yl4_A 517 ENEYLVQEALDRLMDGRTVLVIAHRLSTI-KNANMVA-VLDQGKITEYGKHEELLSKPNGIY 576 (595)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEECCCHHHH-HHSSEEE-EEETTEEEEEECSCC------C--
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHH-HcCCEEE-EEECCEEEEECCHHHHHhCCChHH
Confidence 899999999 345 4599996 499999999999999987544444
No 30
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.4e-43 Score=364.14 Aligned_cols=224 Identities=10% Similarity=0.110 Sum_probs=175.0
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
...+|+.++++.+++..+. ...+|+++||+|+|+++ .. + |+|+||+|++||++||+||||||||||++
T Consensus 313 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~--~---l~~v~~~i~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 313 AACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVP--A---LRNINLKIPAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp HHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCC--S---EEEEEEEECTTCEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCc--c---ccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3456778888766543221 13469999999999743 33 3 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+.+ ++.+|+.++.. .
T Consensus 388 ~l~g~~~-----p~~G~i~~~g~~~~~~~---~-~~~~~~i~~v~Q~~~l~~~-----------tv~eni~~~~~--~-- 443 (582)
T 3b60_A 388 LITRFYD-----IDEGHILMDGHDLREYT---L-ASLRNQVALVSQNVHLFND-----------TVANNIAYART--E-- 443 (582)
T ss_dssp HHTTTTC-----CSEEEEEETTEETTTBC---H-HHHHHTEEEECSSCCCCSS-----------BHHHHHHTTTT--S--
T ss_pred HHhhccC-----CCCCeEEECCEEccccC---H-HHHHhhCeEEccCCcCCCC-----------CHHHHHhccCC--C--
Confidence 9999999 99999999999986110 0 0113345666666655443 45555554321 0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...++++.++++.+++.+.+.++|+|++|.++++ +.+||||||||++||||| |||||+||+
T Consensus 444 --~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~------~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 444 --EYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN------GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp --CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT------SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred --CCCHHHHHHHHHHcCCHHHHHhccccccccccCC------CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1124668889999999999999999999999988 559999999999999999 999999984
Q ss_pred -------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+|||+ ...+.||||++ |++|++++.|++++++..
T Consensus 516 ~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 516 ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV-VEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE-EECCEEEEecCHHHHHHc
Confidence 8999999992 33356999964 999999999999998764
No 31
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-43 Score=343.48 Aligned_cols=213 Identities=12% Similarity=0.092 Sum_probs=168.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
...|+++||+|+|+++.. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 17 ~~~i~~~~l~~~y~~~~~-~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGN-AI---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWDS 86 (390)
T ss_dssp SCCEEEEEEEEESSSSSC-CS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTTS
T ss_pred CCeEEEEEEEEEecCCCe-EE---eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECCc
Confidence 356999999999953221 24 777999999999999999999999999999999985 57999999999862
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . ...++.++|++|++..|. .++.+|+.+.. ...++++.++++.++|.+...++|+
T Consensus 87 ~~---~-~~~rr~ig~v~Q~~~lf~-----------~tv~enl~~~~--------~~~~~~v~~~l~~~~L~~~~~~~p~ 143 (390)
T 3gd7_A 87 IT---L-EQWRKAFGVIPQKVFIFS-----------GTFRKNLDPNA--------AHSDQEIWKVADEVGLRSVIEQFPG 143 (390)
T ss_dssp SC---H-HHHHHTEEEESCCCCCCS-----------EEHHHHHCTTC--------CSCHHHHHHHHHHTTCHHHHTTSTT
T ss_pred CC---h-HHHhCCEEEEcCCcccCc-----------cCHHHHhhhcc--------ccCHHHHHHHHHHhCCHHHHhhccc
Confidence 10 0 001234566766665543 34555554211 1123567889999999998888888
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 282 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~ 282 (346)
++++.+++.+ .+|||||||||+||||| ||||++||. ++|+|+||| ..+.
T Consensus 144 ~l~~~i~~~g------~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~ 217 (390)
T 3gd7_A 144 KLDFVLVDGG------CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM 217 (390)
T ss_dssp GGGCEECTTT------TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG
T ss_pred cccccccccc------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH
Confidence 8999888874 48999999999999999 999999983 889999999 3455
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..||||++ |++|+|++.|++++++.+|.+.++..++.
T Consensus 218 ~~aDri~v-l~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 218 LECDQFLV-IEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp TTCSEEEE-EETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred HhCCEEEE-EECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 67999975 99999999999999999998887777664
No 32
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-42 Score=322.89 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=155.2
Q ss_pred cEEEeeeEEEeC-CCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYT-PGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~-~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||+++|+ ++. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECch
Confidence 589999999997 221 0124 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecc-cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC--ccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~-~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~ 224 (346)
.. .++.++|++|++ ..+.. .++.+|+.++.... ......++++.++++.+++. +
T Consensus 74 ------~~-~~~~i~~v~q~~~~~~~~----------~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~---- 130 (266)
T 2yz2_A 74 ------YE-IRRNIGIAFQYPEDQFFA----------ERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS---- 130 (266)
T ss_dssp ------HH-HGGGEEEECSSGGGGCCC----------SSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHH----
T ss_pred ------HH-hhhhEEEEeccchhhcCC----------CcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcc----
Confidence 11 133567777764 22222 24455555432211 11223346788999999998 7
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 131 -------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 131 -------------FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp -------------HTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred -------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56889999999999999999999 999999984 899999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 312 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 312 (346)
+.+..+||++++ |++|++++.|++++++..+.+
T Consensus 198 ~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~ 231 (266)
T 2yz2_A 198 IETVINHVDRVVV-LEKGKKVFDGTRMEFLEKYDP 231 (266)
T ss_dssp CTTTGGGCSEEEE-EETTEEEEEEEHHHHHHHSCC
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCccc
Confidence 567889999964 999999999999998876554
No 33
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.2e-43 Score=359.22 Aligned_cols=224 Identities=17% Similarity=0.127 Sum_probs=174.3
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
.+.+|+.++++.+++..+. ....|+++||+|+|+++.. .+ |+|+||+|++||+++|+||||||||||+
T Consensus 311 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~-~~---l~~isl~i~~Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 311 ASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTD-PV---LSGVNFSVKPGSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp HHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSC-CS---EEEEEEEECTTCEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCC-cc---eeceEEEEcCCCEEEEECCCCCCHHHHH
Confidence 3456778888766543221 1235999999999965332 14 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
++|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+. .++++|+.++..
T Consensus 387 ~~l~g~~~-----~~~G~i~i~g~~i~~~~---~-~~~r~~i~~v~Q~~~lf~-----------~tv~eni~~~~~---- 442 (587)
T 3qf4_A 387 NLIPRLID-----PERGRVEVDELDVRTVK---L-KDLRGHISAVPQETVLFS-----------GTIKENLKWGRE---- 442 (587)
T ss_dssp HTTTTSSC-----CSEEEEEESSSBGGGBC---H-HHHHHHEEEECSSCCCCS-----------EEHHHHHTTTCS----
T ss_pred HHHhCCcc-----CCCcEEEECCEEcccCC---H-HHHHhheEEECCCCcCcC-----------ccHHHHHhccCC----
Confidence 99999999 99999999999986110 0 011334566666655443 355556554422
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
...++++.++++.+++.+.+..+|+|++|.++++ +.+||||||||++||||| |||||+||.
T Consensus 443 ---~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~------~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~ 513 (587)
T 3qf4_A 443 ---DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG------GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513 (587)
T ss_dssp ---SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSS------SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCC------CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 1123567778999999999999999999999988 569999999999999999 999999984
Q ss_pred --------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 --------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 --------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+|||+ .....||||++ |++|+|++.|+++++++.
T Consensus 514 ~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v-l~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 514 TEKRILDGLKRYTKGCTTFIITQKIPTALLADKILV-LHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 8999999993 33457999964 999999999999998764
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.1e-42 Score=323.90 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=152.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~y~~~-~--v---L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 87 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGK-T--I---LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPGK 87 (279)
T ss_dssp CEEEEEEEEEEEETTE-E--E---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC-
T ss_pred CceEEEEeEEEEECCE-E--E---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 4579999999999753 2 4 777999999999999999999999999999999999 999999999988630
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
... .... .++.++|++|+...+.. ...++.+|+.++.... ........++++.++++.+++.+
T Consensus 88 ~~~-~~~~-~~~~i~~v~Q~~~~~~~--------~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---- 153 (279)
T 2ihy_A 88 VGY-SAET-VRQHIGFVSHSLLEKFQ--------EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA---- 153 (279)
T ss_dssp --C-CHHH-HHTTEEEECHHHHTTSC--------TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG----
T ss_pred ccC-CHHH-HcCcEEEEEcCcccccC--------CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh----
Confidence 000 0001 12345666665432110 0014555655542110 01112344677899999999987
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceE--EEEe
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV--VVVT 277 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tv--iiiT 277 (346)
.+++++.+||||||||++||||| ||||++||. |+|| |+||
T Consensus 154 -------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivt 220 (279)
T 2ihy_A 154 -------------KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVT 220 (279)
T ss_dssp -------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 56889999999999999999999 999999984 7899 9999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 221 Hd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 221 HFIEEITANFSKILL-LKDGQSIQQGAVEDILT 252 (279)
T ss_dssp SCGGGCCTTCCEEEE-EETTEEEEEEEHHHHCS
T ss_pred cCHHHHHHhCCEEEE-EECCEEEEECCHHHHhc
Confidence 9 567789999965 99999999999888764
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.2e-42 Score=318.75 Aligned_cols=203 Identities=12% Similarity=0.159 Sum_probs=156.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|++.....+ |++|||+|++||+++|+||||||||||+|+|+|+++ | +|+|.++|+++..
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~~ 85 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRT---LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVNK 85 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGGG
T ss_pred CCeEEEEEEEEEeCCCCcCce---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhhh
Confidence 357999999999975321114 777999999999999999999999999999999998 7 7999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .... .++.++|++|++..+.. ++.+|+.++.. .. .++++.++++.+++.+.+..+|+
T Consensus 86 ~---~~~~-~~~~i~~v~Q~~~l~~~-----------tv~enl~~~~~---~~----~~~~~~~~l~~~~l~~~~~~l~~ 143 (260)
T 2ghi_A 86 Y---NRNS-IRSIIGIVPQDTILFNE-----------TIKYNILYGKL---DA----TDEEVIKATKSAQLYDFIEALPK 143 (260)
T ss_dssp B---CHHH-HHTTEEEECSSCCCCSE-----------EHHHHHHTTCT---TC----CHHHHHHHHHHTTCHHHHHTSTT
T ss_pred c---CHHH-HhccEEEEcCCCccccc-----------CHHHHHhccCC---CC----CHHHHHHHHHHhCCHHHHHhccc
Confidence 1 0001 13456777776654432 44555544321 01 13456778889999877767788
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
++++.+++. +.+||||||||++||||| ||||++||. ++|+|+||| +.+
T Consensus 144 ~~~~~~~~~------~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~ 217 (260)
T 2ghi_A 144 KWDTIVGNK------GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI 217 (260)
T ss_dssp GGGCEESSS------SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS
T ss_pred cccccccCC------cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 888877655 679999999999999999 999999984 789999999 344
Q ss_pred hccccEEEEEecCCeEeecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
..||++++ |++|++++.|++++++..
T Consensus 218 -~~~d~i~~-l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 218 -SSAESIIL-LNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp -TTCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred -HhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 45999964 999999999999988754
No 36
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.2e-40 Score=308.39 Aligned_cols=194 Identities=12% Similarity=0.118 Sum_probs=146.8
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~~~-~--v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~~~ 71 (250)
T 2d2e_A 3 QLEIRDLWASIDGE-T--I---LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENILE 71 (250)
T ss_dssp EEEEEEEEEEETTE-E--E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEECTT
T ss_pred eEEEEeEEEEECCE-E--E---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEECCC
Confidence 69999999999753 2 4 7779999999999999999999999999999998 78 999999999999752
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC-cccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 225 (346)
.. .....+..++|++|++..+.++ +.+|+.+...... + .........+++.++++.+++. +
T Consensus 72 ~~---~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~--------~~~~~~~~~~~~~~~l~~~gl~~~----- 134 (250)
T 2d2e_A 72 LS---PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL-G--------REVGVAEFWTKVKKALELLDWDES----- 134 (250)
T ss_dssp SC---HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH-T--------SCCCHHHHHHHHHHHHHHHTCCGG-----
T ss_pred CC---HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc-c--------ccCCHHHHHHHHHHHHHHcCCChh-----
Confidence 11 1111123467888887766655 6666654321100 0 0011234456788999999995 5
Q ss_pred cceeeeeechhhhcccCCCC-CCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~-LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..++++.+ ||||||||++||||| ||||++||. |+|||+|||
T Consensus 135 ------------~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 135 ------------YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp ------------GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred ------------HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46888999 999999999999999 999999984 789999999
Q ss_pred -hhhhcc-ccEEEEEecCCeEeecCCcc
Q 019066 279 -GDLLSL-TDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 279 -~~~~~~-aDri~v~l~~G~iv~~g~~~ 304 (346)
+.+..+ ||++++ |++|++++.|+++
T Consensus 203 ~~~~~~~~~d~v~~-l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 203 QRILNYIQPDKVHV-MMDGRVVATGGPE 229 (250)
T ss_dssp SGGGGTSCCSEEEE-EETTEEEEEESHH
T ss_pred HHHHHHhcCCEEEE-EECCEEEEEeCHH
Confidence 567777 599964 9999999998875
No 37
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.2e-42 Score=319.80 Aligned_cols=196 Identities=10% Similarity=0.085 Sum_probs=144.0
Q ss_pred CCcEEEeeeEEEeCCC--CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~--~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
..+|+++||+++|+++ .. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i 83 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQ--V---LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPL 83 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSC--C---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEG
T ss_pred CceEEEEEEEEEeCCCCCce--e---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEc
Confidence 3579999999999752 22 3 777999999999999999999999999999999999 9999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHH-----HHHHHHHHHHHc--CC
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-----LRNRMRCKAHKI--GC 218 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l 218 (346)
... .. ...++.++|++|++..+.. ++.+|+.++.... ..... ....+.++++.+ ++
T Consensus 84 ~~~---~~-~~~~~~i~~v~Q~~~l~~~-----------tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl 146 (271)
T 2ixe_A 84 VQY---DH-HYLHTQVAAVGQEPLLFGR-----------SFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGY 146 (271)
T ss_dssp GGB---CH-HHHHHHEEEECSSCCCCSS-----------BHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGG
T ss_pred ccC---CH-HHHhccEEEEecCCccccc-----------cHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcch
Confidence 510 00 0112345677776554432 4455555432110 01011 111233445555 44
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cce
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 272 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~t 272 (346)
.. ..++++.+||||||||++||||| ||||++||. |+|
T Consensus 147 ~~-----------------~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~t 209 (271)
T 2ixe_A 147 DT-----------------EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209 (271)
T ss_dssp GS-----------------BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSE
T ss_pred hh-----------------hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCE
Confidence 43 34667889999999999999999 999999873 789
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+|+||| +.+. .||++++ |++|++++.|++++++..
T Consensus 210 viivtHd~~~~~-~~d~v~~-l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 210 VLLITQQLSLAE-RAHHILF-LKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp EEEECSCHHHHT-TCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred EEEEeCCHHHHH-hCCEEEE-EECCEEEEECCHHHHHhC
Confidence 999999 4455 5999964 999999999999988754
No 38
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.3e-40 Score=311.03 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=153.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i 145 (346)
.++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++
T Consensus 18 ~~~l~~~~l~~~y~~~-~--v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~i 86 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDK-A--I---LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDL 86 (267)
T ss_dssp --CEEEEEEEEEETTE-E--E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEEG
T ss_pred CceEEEEeEEEEECCE-E--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEEC
Confidence 4579999999999652 2 4 7779999999999999999999999999999999 57 8999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
.... .....++.++|++|++..+..+ +.+++.+....... ..+. ......+.++++.++++.+++...
T Consensus 87 ~~~~---~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~gl~~~--- 155 (267)
T 2zu0_C 87 LALS---PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS--YRGQ---ETLDRFDFQDLMEEKIALLKMPED--- 155 (267)
T ss_dssp GGSC---HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHH--GGGC---CCCCHHHHHHHHHHHHHHTTCCTT---
T ss_pred CcCC---HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhh--hhcc---ccCCHHHHHHHHHHHHHHcCCChh---
Confidence 5111 1111123467888887776665 66666542211100 0010 011233446788999999999642
Q ss_pred ccceeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
..++++. +||||||||++||||| ||||++||. |+|||+|||
T Consensus 156 -------------~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 222 (267)
T 2zu0_C 156 -------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222 (267)
T ss_dssp -------------TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred -------------HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 3577887 5999999999999999 999999984 789999999
Q ss_pred --hhhhcc-ccEEEEEecCCeEeecCCccccc
Q 019066 279 --GDLLSL-TDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 279 --~~~~~~-aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
+.+..+ |||+++ |++|++++.|+++++.
T Consensus 223 d~~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 223 YQRILDYIKPDYVHV-LYQGRIVKSGDFTLVK 253 (267)
T ss_dssp SGGGGGTSCCSEEEE-EETTEEEEEECTTHHH
T ss_pred CHHHHHhhcCCEEEE-EECCEEEEEcCHHHHh
Confidence 456665 899964 9999999999887664
No 39
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.1e-39 Score=300.58 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=146.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+
T Consensus 4 ~l~i~~l~~~y~~~~~--v---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~--------- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQAENF--L---FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEV--------- 64 (253)
T ss_dssp EEEEEEEEEEETTTTE--E---EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEE---------
T ss_pred eEEEeeEEEEeCCCCe--E---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE---------
Confidence 6999999999972233 3 777999999999999999999999999999999999 99999982
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc-cC--CChHHHHHHHHHHHHHcCCCcccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI-RR--SDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~-~~--~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
++.++|++|+...+..+ |.+|+. ++.... .. ......++++.++++.+++.+
T Consensus 65 --------~~~i~~v~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 120 (253)
T 2nq2_C 65 --------YQSIGFVPQFFSSPFAYSVLDIVL-----------MGRSTHINTFAKPKSHDYQVAMQALDYLNLTH----- 120 (253)
T ss_dssp --------CSCEEEECSCCCCSSCCBHHHHHH-----------GGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----
T ss_pred --------eccEEEEcCCCccCCCCCHHHHHH-----------HhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----
Confidence 12457888877655333 555544 332111 00 112344677899999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
.+++++.+||||||||++||||| ||||++||. |+|+|++||
T Consensus 121 ------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 121 ------------LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp ------------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 56889999999999999999999 999999983 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|+ ++.|++++++.
T Consensus 189 ~~~~~~~~d~v~~-l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 189 PNQVVAIANKTLL-LNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHCSEEEE-EETTE-EEEEEHHHHCC
T ss_pred HHHHHHhCCEEEE-EeCCe-EecCCHHHHhC
Confidence 567789999964 99999 99998888753
No 40
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.7e-40 Score=367.21 Aligned_cols=225 Identities=11% Similarity=0.102 Sum_probs=175.4
Q ss_pred hhhHHHHHHhhhhhhhhcc---------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 118 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTL 118 (346)
.+..++.++++.+++..+. ....|+++||+|+|++.....+ |+||||+|++||++|||||||||||||
T Consensus 356 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG~sGsGKSTl 432 (1284)
T 3g5u_A 356 GAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVGNSGCGKSTT 432 (1284)
T ss_dssp HHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEEECCCCCCHHHH
Confidence 3456788888776553221 1235999999999975422224 777999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 119 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 119 l~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
+++|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+.+ ++.+|+.++..
T Consensus 433 ~~ll~g~~~-----~~~G~i~i~g~~i~~~~---~-~~~r~~i~~v~Q~~~l~~~-----------ti~eNi~~g~~--- 489 (1284)
T 3g5u_A 433 VQLMQRLYD-----PLDGMVSIDGQDIRTIN---V-RYLREIIGVVSQEPVLFAT-----------TIAENIRYGRE--- 489 (1284)
T ss_dssp HHHTTTSSC-----CSEEEEEETTEEGGGSC---H-HHHHHHEEEECSSCCCCSS-----------CHHHHHHHHCS---
T ss_pred HHHHhCCCC-----CCCeEEEECCEEHHhCC---H-HHHHhheEEEcCCCccCCc-----------cHHHHHhcCCC---
Confidence 999999999 99999999999986110 0 0113345566666555444 45555554432
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
...++++.++++.+++.+++..+|+|++|.|||+ +.+||||||||++||||| |||||+||.
T Consensus 490 ----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~------g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~ 559 (1284)
T 3g5u_A 490 ----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGER------GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559 (1284)
T ss_dssp ----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSS------SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCH
T ss_pred ----CCCHHHHHHHHHHhCcHHHHHhccccccccccCC------CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 1123567888999999999999999999999998 459999999999999999 999999984
Q ss_pred ---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 ---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 ---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|+|+|+||| ..+.. ||+|++ |++|+|++.|++++++...
T Consensus 560 ~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~v-l~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 560 ESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAG-FDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEE-CSSSCCCCEECHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEE-EECCEEEEECCHHHHHhCC
Confidence 899999999 45554 999965 9999999999999988653
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.2e-40 Score=303.00 Aligned_cols=185 Identities=13% Similarity=0.130 Sum_probs=146.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++ . + |+|+||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|+++....
T Consensus 4 ~l~~~~l~~~----~---v---l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~~~~ 67 (249)
T 2qi9_C 4 VMQLQDVAES----T---R---LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLEAWS 67 (249)
T ss_dssp EEEEEEEEET----T---T---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGGGSC
T ss_pred EEEEEceEEE----E---E---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECCcCC
Confidence 6999999986 2 3 788999999999999999999999999999999999 99 99999999874100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
... .++.++|++|+...+..+ ++.+|+.++... .. . ++++.++++.+++.+
T Consensus 68 ---~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~--~~--~--~~~~~~~l~~~~l~~--------- 118 (249)
T 2qi9_C 68 ---ATK-LALHRAYLSQQQTPPFAT----------PVWHYLTLHQHD--KT--R--TELLNDVAGALALDD--------- 118 (249)
T ss_dssp ---HHH-HHHHEEEECSCCCCCTTC----------BHHHHHHTTCSS--TT--C--HHHHHHHHHHTTCGG---------
T ss_pred ---HHH-HhceEEEECCCCccCCCC----------cHHHHHHHhhcc--CC--c--HHHHHHHHHHcCChh---------
Confidence 000 122456666665443322 455555543211 01 1 567889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc----------------CccccCCCC----------------CceEEEEe
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tviiiT 277 (346)
.+++++.+||||||||++||||| ||||++||. |+|+|++|
T Consensus 119 --------~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 119 --------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp --------GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56888999999999999999998 799999984 78999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 191 Hd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 191 HDLNHTLRHAHRAWL-LKGGKMLASGRREEVLT 222 (249)
T ss_dssp SCHHHHHHHCSEEEE-EETTEEEEEEEHHHHSC
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEeCCHHHHhc
Confidence 9 567789999964 99999999999888764
No 42
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.5e-39 Score=297.31 Aligned_cols=187 Identities=15% Similarity=0.131 Sum_probs=144.4
Q ss_pred CcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+|+++||+++|+++ .. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~~~~~--i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~---- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTP--V---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR---- 70 (229)
T ss_dssp EEEEEEEEEECSSTTSCC--S---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC----
T ss_pred ceEEEEEEEEEeCCCCce--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE----
Confidence 469999999999642 33 4 777999999999999999999999999999999999 99999999872
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
++|++|++..+...|.+| +.++.. . .. .+..++++.+++.+.+..+|.
T Consensus 71 -------------i~~v~q~~~~~~~tv~en-----------l~~~~~----~-~~---~~~~~~~~~~~l~~~~~~~~~ 118 (229)
T 2pze_A 71 -------------ISFCSQFSWIMPGTIKEN-----------IIFGVS----Y-DE---YRYRSVIKACQLEEDISKFAE 118 (229)
T ss_dssp -------------EEEECSSCCCCSBCHHHH-----------HHTTSC----C-CH---HHHHHHHHHTTCHHHHTTSTT
T ss_pred -------------EEEEecCCcccCCCHHHH-----------hhccCC----c-Ch---HHHHHHHHHhCcHHHHHhCcc
Confidence 367888765554334444 443321 0 11 123445666677665555555
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
+.++.+++. +.+||||||||++||||| ||||++||. ++|+|++|| +.
T Consensus 119 ~~~~~~~~~------~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 119 KDNIVLGEG------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192 (229)
T ss_dssp GGGSCBCTT------CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred cccccccCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence 555555443 679999999999999999 999999873 789999999 44
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+. .||++++ |++|++++.|++++++..
T Consensus 193 ~~-~~d~v~~-l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 193 LK-KADKILI-LHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HH-HCSEEEE-EETTEEEEEECHHHHHTC
T ss_pred HH-hCCEEEE-EECCEEEEECCHHHHHhc
Confidence 54 5999964 999999999999988764
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.2e-39 Score=298.56 Aligned_cols=185 Identities=14% Similarity=0.134 Sum_probs=147.2
Q ss_pred cEEEeeeEEEeCCC---CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 70 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~---~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
||+++||+++|+++ .. + |+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++.
T Consensus 1 ml~~~~l~~~y~~~~~~~~--i---l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF--S---LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVR 68 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE--E---EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGG
T ss_pred CEEEEEEEEEeCCCCccce--e---EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECc
Confidence 58999999999651 22 4 777999999 9999999999999999999999987 47899999999875
Q ss_pred CcccccccccCCCCcc-ceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC-ccccc
Q 019066 147 GTYFLQEYTIPRGSNS-FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIR 224 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~-~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 224 (346)
. ... ++.++ |++|++.. ...+.+|+.++. ... ...++++.++++.+++. +
T Consensus 69 ~------~~~-~~~i~~~v~Q~~~l-~~tv~enl~~~~-----------~~~-----~~~~~~~~~~l~~~gl~~~---- 120 (263)
T 2pjz_A 69 K------IRN-YIRYSTNLPEAYEI-GVTVNDIVYLYE-----------ELK-----GLDRDLFLEMLKALKLGEE---- 120 (263)
T ss_dssp G------CSC-CTTEEECCGGGSCT-TSBHHHHHHHHH-----------HHT-----CCCHHHHHHHHHHTTCCGG----
T ss_pred c------hHH-hhheEEEeCCCCcc-CCcHHHHHHHhh-----------hhc-----chHHHHHHHHHHHcCCChh----
Confidence 1 111 44667 77777654 223555554432 111 11245688899999998 6
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hh
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GD 280 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. ..|+|++|| +.
T Consensus 121 -------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~ 187 (263)
T 2pjz_A 121 -------------ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDM 187 (263)
T ss_dssp -------------GGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGG
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 46889999999999999999999 999999984 229999999 56
Q ss_pred hhcccc-EEEEEecCCeEeecCCcccccc
Q 019066 281 LLSLTD-RARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 281 ~~~~aD-ri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+..+|| ++++ |++|++++.|++++++.
T Consensus 188 ~~~~~d~~i~~-l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 188 LNLYKEYKAYF-LVGNRLQGPISVSELLE 215 (263)
T ss_dssp GGGCTTSEEEE-EETTEEEEEEEHHHHHT
T ss_pred HHHhcCceEEE-EECCEEEEecCHHHHHh
Confidence 788999 9964 99999999999988874
No 44
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3e-39 Score=292.43 Aligned_cols=175 Identities=14% Similarity=0.207 Sum_probs=141.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|++ . + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~--~--i---l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~- 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--P--V---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT- 74 (214)
T ss_dssp -CEEEEEEEEEESSS--E--E---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCC--e--E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhh-
Confidence 457999999999975 3 3 777999999999999999999999999999999999 99999999998863
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. .++.++|++|++..+..+ |.+|+.++.. .... . .. ++++.++++.+++.+
T Consensus 75 -----~---~~~~i~~v~q~~~~~~~~tv~enl~~~~~-----------~~~~-~-~~-~~~~~~~l~~~gl~~------ 126 (214)
T 1sgw_A 75 -----K---VKGKIFFLPEEIIVPRKISVEDYLKAVAS-----------LYGV-K-VN-KNEIMDALESVEVLD------ 126 (214)
T ss_dssp -----G---GGGGEEEECSSCCCCTTSBHHHHHHHHHH-----------HTTC-C-CC-HHHHHHHHHHTTCCC------
T ss_pred -----h---hcCcEEEEeCCCcCCCCCCHHHHHHHHHH-----------hcCC-c-hH-HHHHHHHHHHcCCCc------
Confidence 1 134578888887666554 6666654321 1110 1 12 467888999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
. ++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 127 -----------~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 127 -----------L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp -----------T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred -----------C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6 778999999999999999999 999999995 789999999 5
Q ss_pred hhhccccEEEEEecCCeE
Q 019066 280 DLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~i 297 (346)
.+..+||++ + +..|+|
T Consensus 195 ~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 195 SYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp TTSSEEEEG-G-GGBC--
T ss_pred HHHHhCCEE-E-EeCCcc
Confidence 788899999 4 777776
No 45
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=296.59 Aligned_cols=186 Identities=13% Similarity=0.164 Sum_probs=137.8
Q ss_pred cEEEeeeEEEeCC-CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~-~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|++ +.. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 3 ~l~~~~l~~~y~~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~----- 67 (237)
T 2cbz_A 3 SITVRNATFTWARSDPP--T---LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS----- 67 (237)
T ss_dssp CEEEEEEEEESCTTSCC--S---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC-----
T ss_pred eEEEEEEEEEeCCCCCc--e---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE-----
Confidence 5999999999974 223 4 777999999999999999999999999999999999 99999999882
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
++|++|++..+...|. +|+.++... ... ...++++.+++.+.+..+|.|
T Consensus 68 ------------i~~v~Q~~~~~~~tv~-----------enl~~~~~~----~~~----~~~~~~~~~~l~~~~~~~~~~ 116 (237)
T 2cbz_A 68 ------------VAYVPQQAWIQNDSLR-----------ENILFGCQL----EEP----YYRSVIQACALLPDLEILPSG 116 (237)
T ss_dssp ------------EEEECSSCCCCSEEHH-----------HHHHTTSCC----CTT----HHHHHHHHTTCHHHHTTSTTG
T ss_pred ------------EEEEcCCCcCCCcCHH-----------HHhhCcccc----CHH----HHHHHHHHHhhHHHHHhcccc
Confidence 3678887643322244 444443210 111 122334444443323223334
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC------------------CceEEEEec--h
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH--G 279 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tviiiTH--~ 279 (346)
+++.+ ++++.+||||||||++||||| ||||++||+ |+|+|+||| +
T Consensus 117 ~~~~~------~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~ 190 (237)
T 2cbz_A 117 DRTEI------GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMS 190 (237)
T ss_dssp GGSEE------STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCST
T ss_pred ccccc------cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChH
Confidence 44433 455889999999999999999 999999762 689999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+ ..||++++ |++|++++.|++++++..
T Consensus 191 ~~-~~~d~v~~-l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 191 YL-PQVDVIIV-MSGGKISEMGSYQELLAR 218 (237)
T ss_dssp TG-GGSSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HH-HhCCEEEE-EeCCEEEEeCCHHHHhhc
Confidence 44 46999964 999999999999888654
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-39 Score=359.78 Aligned_cols=227 Identities=11% Similarity=0.109 Sum_probs=177.0
Q ss_pred hhhHHHHHHhhhhhhhhcc---------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 118 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTL 118 (346)
....++.++++.+++.... ....|+++||+|+|++.....+ |+|+||+|++||++||+||||||||||
T Consensus 999 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsGKSTl 1075 (1284)
T 3g5u_A 999 VSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCGKSTV 1075 (1284)
T ss_dssp HHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTTHHHH
T ss_pred HHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCCHHHH
Confidence 3456677887766543221 1235999999999975432225 666999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 119 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 119 l~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
+++|.|+++ |++|+|.++|+++.... . ...|+.+++++|++..+.+ ++.+|+.++...
T Consensus 1076 ~~~l~g~~~-----p~~G~I~i~g~~i~~~~---~-~~~r~~i~~v~Q~~~l~~~-----------ti~eNi~~~~~~-- 1133 (1284)
T 3g5u_A 1076 VQLLERFYD-----PMAGSVFLDGKEIKQLN---V-QWLRAQLGIVSQEPILFDC-----------SIAENIAYGDNS-- 1133 (1284)
T ss_dssp HHHHTTSSC-----CSEEEEESSSSCTTSSC---H-HHHTTSCEEEESSCCCCSS-----------BHHHHHTCCCSS--
T ss_pred HHHHhcCcC-----CCCCEEEECCEEcccCC---H-HHHHhceEEECCCCccccc-----------cHHHHHhccCCC--
Confidence 999999999 99999999999986211 1 1124567777777655443 455555554321
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
....++++.++++.+++.+.+..+|+||+|.|||+| .+||||||||++||||| ||||++||.
T Consensus 1134 ---~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G------~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1134 ---RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG------TQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp ---CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS------CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred ---CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC------CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 011235677889999999999999999999999984 59999999999999999 999999983
Q ss_pred ---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 ---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 ---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|+|+|+||| +.+ ..||||++ |++|+|++.|++++++...
T Consensus 1205 ~~~~~i~~~l~~~~~~~tvi~isH~l~~i-~~~dri~v-l~~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1205 ESEKVVQEALDKAREGRTCIVIAHRLSTI-QNADLIVV-IQNGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp HHHHHHHHHHHHHSSSSCEEEECSCTTGG-GSCSEEEE-EETBEEEEEECHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCHHHH-HcCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 899999999 455 45999965 9999999999999998763
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6e-37 Score=289.35 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=129.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.+ . . + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 38 ~~~l~~~~l~~~~--~-~--v---l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~---- 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--T-P--V---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR---- 100 (290)
T ss_dssp ------------C--C-C--S---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCSC----
T ss_pred CceEEEEEEEEcC--c-e--E---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCE----
Confidence 3579999999864 2 2 3 777999999999999999999999999999999999 99999999872
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
++|++|+...+...|.+| +. +.. .. . .++.++++.+++.+.+..+|+
T Consensus 101 -------------i~~v~Q~~~l~~~tv~en-----------l~-~~~----~~-~---~~~~~~~~~~~l~~~l~~~~~ 147 (290)
T 2bbs_A 101 -------------ISFCSQNSWIMPGTIKEN-----------II-GVS----YD-E---YRYRSVIKACQLEEDISKFAE 147 (290)
T ss_dssp -------------EEEECSSCCCCSSBHHHH-----------HH-TTC----CC-H---HHHHHHHHHTTCHHHHHTSTT
T ss_pred -------------EEEEeCCCccCcccHHHH-----------hh-Ccc----cc-h---HHHHHHHHHhChHHHHHhccc
Confidence 367888765544334444 43 111 01 1 223445666777665555666
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
++++.+++. +.+||||||||++||||| ||||++||. |+|+|+||| +.
T Consensus 148 ~~~~~~~~~------~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~ 221 (290)
T 2bbs_A 148 KDNIVLGEG------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221 (290)
T ss_dssp GGGCBC----------CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred cccchhcCc------cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 666655544 679999999999999999 999999873 789999999 44
Q ss_pred hhccccEEEEEecCCeEeecCCcccccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+. .||+++ +|++|++++.|++++++.
T Consensus 222 ~~-~~d~i~-~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 222 LK-KADKIL-ILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HH-HSSEEE-EEETTEEEEEECHHHHHH
T ss_pred HH-cCCEEE-EEECCeEEEeCCHHHHhh
Confidence 54 599996 499999999999988864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=2e-32 Score=281.98 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=142.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|+++.|++. . |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~~~--~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~------ 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF--K-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD------ 416 (607)
T ss_dssp CEEEEECCEEEECSSC--E-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC------
T ss_pred ceEEEEeceEEEecce--E-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe------
Confidence 3579999999999652 2 777999999999999999999999999999999999 999999761
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..++|++|+......+ |.+++...... .....+++.++++.+++.+
T Consensus 417 -----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~----------------~~~~~~~~~~~l~~~~l~~------ 463 (607)
T 3bk7_A 417 -----------LTVAYKPQYIKAEYEGTVYELLSKIDSS----------------KLNSNFYKTELLKPLGIID------ 463 (607)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHHH----------------HHHCHHHHHHTHHHHTCTT------
T ss_pred -----------eEEEEEecCccCCCCCcHHHHHHhhhcc----------------CCCHHHHHHHHHHHcCCch------
Confidence 1357888886543333 54433221000 0011356788999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+|||||||||+||||| ||||++||. |.|+|+|||
T Consensus 464 -----------~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 464 -----------LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp -----------TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46899999999999999999999 999999983 789999999
Q ss_pred hhhhccccEEEEEecC--CeEeecCCcccccc
Q 019066 279 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 308 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 308 (346)
+++..+|||+++ |++ |+++..|++++++.
T Consensus 533 ~~~~~~adrv~v-l~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLIV-FEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEE-EcCCcceEEecCCHHHHHh
Confidence 578889999965 875 78888899887764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.6e-32 Score=279.34 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=140.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|+++.|++ . . |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~~--~--~---l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~------ 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS--F--R---LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD------ 346 (538)
T ss_dssp CEEEEECCEEEEETT--E--E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC------
T ss_pred CeEEEEeeEEEEECC--E--E---EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC------
Confidence 457999999999965 2 2 777999999999999999999999999999999999 999999751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..++|++|+......+ |.+++...... . ....+++.++++.+++.+
T Consensus 347 -----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~---------~-------~~~~~~~~~~l~~~~l~~------ 393 (538)
T 1yqt_A 347 -----------LTVAYKPQYIKADYEGTVYELLSKIDAS---------K-------LNSNFYKTELLKPLGIID------ 393 (538)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHHH---------H-------HTCHHHHHHTTTTTTCGG------
T ss_pred -----------ceEEEEecCCcCCCCCcHHHHHHhhhcc---------C-------CCHHHHHHHHHHHcCChh------
Confidence 1357888876543332 43333211000 0 001346778899999976
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 394 -----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 394 -----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp -----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46889999999999999999999 999999983 889999999
Q ss_pred hhhhccccEEEEEecC--CeEeecCCcccccc
Q 019066 279 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 308 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 308 (346)
+++..+||||++ |++ |+++..|++++++.
T Consensus 463 ~~~~~~~drv~v-l~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLMV-FEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEE-EeCCcceEeecCCHHHHHh
Confidence 578889999965 885 78888899887753
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.3e-32 Score=279.72 Aligned_cols=176 Identities=10% Similarity=0.064 Sum_probs=135.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|+++.|++ . . |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++..+
T Consensus 267 ~~~l~~~~l~~~~~~--~--~---l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~i-- 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD--F--Q---LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQIL-- 332 (538)
T ss_dssp CEEEEECCEEEEETT--E--E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCCE--
T ss_pred cceEEEcceEEEECC--E--E---EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCeee--
Confidence 457999999999975 2 2 666899999999999999999999999999999999 9999999876544
Q ss_pred cccccccccCCCCccceeecccccc-cchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~-~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
++++|+..... ..|.+++.... .. ... .....+.++++.+++.+
T Consensus 333 --------------~~~~q~~~~~~~~tv~~~l~~~~-----------~~--~~~--~~~~~~~~~l~~~~l~~------ 377 (538)
T 3ozx_A 333 --------------SYKPQRIFPNYDGTVQQYLENAS-----------KD--ALS--TSSWFFEEVTKRLNLHR------ 377 (538)
T ss_dssp --------------EEECSSCCCCCSSBHHHHHHHHC-----------SS--TTC--TTSHHHHHTTTTTTGGG------
T ss_pred --------------EeechhcccccCCCHHHHHHHhh-----------hh--ccc--hhHHHHHHHHHHcCCHH------
Confidence 46666544322 23555543210 00 000 11245678889999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+|||||||||+||||| ||||++||. |.|||+|||
T Consensus 378 -----------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 378 -----------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp -----------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46899999999999999999999 999999983 789999999
Q ss_pred hhhhccccEEEEEecC--CeEeecCCcc
Q 019066 279 GDLLSLTDRARIRTYL--GELLGIPPAK 304 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~--G~iv~~g~~~ 304 (346)
+.+..+||||++ |++ |.+...+++.
T Consensus 447 ~~~~~~aDri~v-l~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 447 SIHDYIADRIIV-FKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCE
T ss_pred HHHHHhCCEEEE-EeCCcceeccCCChH
Confidence 578889999965 875 4444445443
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=2.6e-31 Score=283.83 Aligned_cols=208 Identities=16% Similarity=0.193 Sum_probs=133.4
Q ss_pred CCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||+|+|++. .. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|. ..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~--i---L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~ 737 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKP--Q---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CR 737 (986)
T ss_dssp SEEEEEEEEEECCTTCSSC--S---EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CC
T ss_pred CceEEEEeeEEEeCCCCce--e---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cc
Confidence 4589999999999753 23 3 777999999999999999999999999999999999 99999999863 11
Q ss_pred Ccccccccc---------------------------cCCCCccceeec----------------------------cccc
Q 019066 147 GTYFLQEYT---------------------------IPRGSNSFSLYD----------------------------TRSL 171 (346)
Q Consensus 147 ~~~~~~~~~---------------------------~~r~~i~~~~~d----------------------------~~~~ 171 (346)
..+..+... ..+....+...+ ...+
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 111111100 000000000000 0000
Q ss_pred c-cc-hhhchHhhH-----HHHHhhhhcchhh------------------ccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 172 S-DD-ASDNINMIK-----LWIMEGVRHGELV------------------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 172 ~-~~-v~qn~~~~~-----~~v~~~i~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. .+ +.+|+.+.. .++.+|+.++... .........++++.++++.+||....
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~---- 893 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI---- 893 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH----
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh----
Confidence 0 00 112221100 0111221111000 00000111246788999999997521
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|||+||| +++.
T Consensus 894 -----------~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~ 962 (986)
T 2iw3_A 894 -----------VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTK 962 (986)
T ss_dssp -----------HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHT
T ss_pred -----------hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHH
Confidence 14778999999999999999999 999999984 779999999 5788
Q ss_pred ccccEEEEEecCCeEeecCC
Q 019066 283 SLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~ 302 (346)
.+||++++ |++|+++..|+
T Consensus 963 ~l~DrViv-L~~G~Iv~~G~ 981 (986)
T 2iw3_A 963 NLTEEVWA-VKDGRMTPSGH 981 (986)
T ss_dssp TTCCEEEC-CBTTBCCC---
T ss_pred HhCCEEEE-EECCEEEEeCC
Confidence 89999975 99999998774
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-31 Score=269.97 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=134.4
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCC-----cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~G-----e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++++++|++... + ++++||++.+| |+++|+||||||||||+++|+|+++ |++|+. +.
T Consensus 350 ~~~~~~y~~~~~--~---l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~------~~-- 411 (608)
T 3j16_B 350 ASRAFSYPSLKK--T---QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQD------IP-- 411 (608)
T ss_dssp SSSCCEECCEEE--E---CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCC------CC--
T ss_pred cceeEEecCccc--c---cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcC------cc--
Confidence 778889975433 4 56699999999 7899999999999999999999999 999862 11
Q ss_pred ccccccccCCCCccceeecccccc-cchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~-~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+..+++++|+..... ..|.++.. .... .. ....+.+.++++.+++.+
T Consensus 412 ---------~~~i~~~~q~~~~~~~~tv~e~~~-----------~~~~--~~---~~~~~~~~~~l~~l~l~~------- 459 (608)
T 3j16_B 412 ---------KLNVSMKPQKIAPKFPGTVRQLFF-----------KKIR--GQ---FLNPQFQTDVVKPLRIDD------- 459 (608)
T ss_dssp ---------SCCEEEECSSCCCCCCSBHHHHHH-----------HHCS--ST---TTSHHHHHHTHHHHTSTT-------
T ss_pred ---------CCcEEEecccccccCCccHHHHHH-----------HHhh--cc---cccHHHHHHHHHHcCChh-------
Confidence 123467777654332 23444321 1000 00 011245678899999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+|||||||||+||||| ||||++||. |.|+|+||| +
T Consensus 460 ----------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 460 ----------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp ----------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56899999999999999999999 999999983 899999999 5
Q ss_pred hhhccccEEEEEecC--CeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYL--GELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~--G~iv~~g~~~~l~~~ 309 (346)
.+..+||||++ |++ |+++..|+|++++..
T Consensus 530 ~~~~~aDrviv-l~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 530 MATYLADKVIV-FEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHCSEEEE-CEEETTTEEECCCCEEHHHH
T ss_pred HHHHhCCEEEE-EeCCCCeEEecCChHHHhhh
Confidence 78889999965 986 899999999988753
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=2.6e-31 Score=273.69 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=125.2
Q ss_pred cEEE--------eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE---
Q 019066 70 LTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--- 138 (346)
Q Consensus 70 ~l~~--------~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I--- 138 (346)
+|++ +||+++|++... + |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~--~---l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~~ 151 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAF--V---LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDNDS 151 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCC--E---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCCC
T ss_pred eEEEecCCccccCCeEEEECCCCe--e---eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCccccc
Confidence 5888 999999976432 4 66799 999999999999999999999999999999 999985
Q ss_pred ------EECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHH
Q 019066 139 ------TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCK 212 (346)
Q Consensus 139 ------~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 212 (346)
.++|.++.. . .......+..+++++|.... .+.++..++.+++... ...+++.++
T Consensus 152 ~~~~~~~~~G~~~~~-~-~~~~~~~~~~i~~~~q~~~~-------~~~~~~~tv~e~l~~~----------~~~~~~~~~ 212 (607)
T 3bk7_A 152 WDNVIRAFRGNELQN-Y-FERLKNGEIRPVVKPQYVDL-------LPKAVKGKVRELLKKV----------DEVGKFEEV 212 (607)
T ss_dssp HHHHHHHTTTSTHHH-H-HHHHHHTSCCCEEECSCGGG-------GGGTCCSBHHHHHHHT----------CCSSCHHHH
T ss_pred cchhhheeCCEehhh-h-hhhhhhhhcceEEeechhhh-------chhhccccHHHHhhhh----------HHHHHHHHH
Confidence 334433310 0 00000011122333332211 1111111344444210 012457789
Q ss_pred HHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--------------
Q 019066 213 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 269 (346)
Q Consensus 213 l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------- 269 (346)
++.+||.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 213 L~~lgL~~-----------------~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~ 275 (607)
T 3bk7_A 213 VKELELEN-----------------VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 275 (607)
T ss_dssp HHHTTCTT-----------------GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCc-----------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 99999987 56899999999999999999999 999999984
Q ss_pred --CceEEEEec--hhhhccccEEEEEecCC
Q 019066 270 --DKPVVVVTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 270 --g~tviiiTH--~~~~~~aDri~v~l~~G 295 (346)
|.|||+||| +.+..+||||++ |+++
T Consensus 276 ~~g~tvIivsHdl~~~~~~adri~v-l~~~ 304 (607)
T 3bk7_A 276 NEGKAVLVVEHDLAVLDYLSDVIHV-VYGE 304 (607)
T ss_dssp HTTCEEEEECSCHHHHHHHCSEEEE-EESC
T ss_pred hcCCEEEEEecChHHHHhhCCEEEE-ECCC
Confidence 899999999 567889999964 8754
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=2.5e-31 Score=270.60 Aligned_cols=177 Identities=15% Similarity=0.154 Sum_probs=121.7
Q ss_pred EEE-eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE---------EE
Q 019066 71 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 140 (346)
Q Consensus 71 l~~-~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I---------~~ 140 (346)
.++ +||+|+|++... + |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~~--~---l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAF--V---LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTCC--E---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCccc--c---ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 466 699999976432 4 66699 999999999999999999999999999999 999985 23
Q ss_pred CceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 141 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 141 ~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+|.++.. ........+..+++++|....... +...++.+++.. ....+++.++++.+|+..
T Consensus 90 ~g~~~~~--~~~~~~~~~~~~~~~~q~~~~~~~-------~~~~~v~e~~~~----------~~~~~~~~~~l~~lgl~~ 150 (538)
T 1yqt_A 90 RGNELQN--YFEKLKNGEIRPVVKPQYVDLIPK-------AVKGKVIELLKK----------ADETGKLEEVVKALELEN 150 (538)
T ss_dssp TTSTHHH--HHHHHHTTSCCCEEECSCGGGSGG-------GCCSBHHHHHHH----------HCSSSCHHHHHHHTTCTT
T ss_pred CCccHHH--HHHHHHHHhhhhhhhhhhhhhcch-------hhhccHHHHHhh----------hhHHHHHHHHHHHcCCCh
Confidence 4433210 000000011123344443221111 000122233221 111245778999999987
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
..++++.+|||||||||+||||| ||||++||. |.|||+
T Consensus 151 -----------------~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 151 -----------------VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp -----------------TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 46889999999999999999999 999999984 899999
Q ss_pred Eec--hhhhccccEEEEEecCC
Q 019066 276 VTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G 295 (346)
||| +.+..+||||++ |++|
T Consensus 214 vsHd~~~~~~~~dri~v-l~~~ 234 (538)
T 1yqt_A 214 VEHDLAVLDYLSDIIHV-VYGE 234 (538)
T ss_dssp ECSCHHHHHHHCSEEEE-EEEE
T ss_pred EeCCHHHHHHhCCEEEE-EcCc
Confidence 999 578889999964 8754
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=7.5e-30 Score=266.10 Aligned_cols=190 Identities=16% Similarity=0.213 Sum_probs=111.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHH---------------------HHHhhhccCCCCCCCC-------ceEEECce
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASER-------AQVTYNSS 143 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl---------------------~~L~gl~~~~~~~p~~-------G~I~~~g~ 143 (346)
|+||||+|++||++||+||||||||||+ +++.++.. |+. |.|.++|.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 6669999999999999999999999998 88888888 774 44555554
Q ss_pred eCCCcccccccccCCCCccceeeccccc------ccchhh--chHhhH-HHHHhhhhcchhhc-cCCChHHHH------H
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSL------SDDASD--NINMIK-LWIMEGVRHGELVI-RRSDSSSLR------N 207 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~------~~~v~q--n~~~~~-~~v~~~i~~~~~~~-~~~~~~~~~------~ 207 (346)
+.. ...+..+++++|....+ .+.+++ +...+. .++.+|+.+..... ........+ .
T Consensus 109 ~~~--------~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (670)
T 3ux8_A 109 TTS--------RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIR 180 (670)
T ss_dssp C-------------CCBHHHHTTCC-------------------------CC--------------------------CH
T ss_pred hhh--------ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHH
Confidence 432 11233445555433221 011111 111111 24555554421100 000000000 1
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC-------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~------- 269 (346)
....+++.+||.+. .+++++.+||||||||++||||| ||||++||+
T Consensus 181 ~~~~~l~~~gL~~~----------------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~ 244 (670)
T 3ux8_A 181 DRLGFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 244 (670)
T ss_dssp HHHHHHHHTTCTTC----------------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHH
T ss_pred HHHHHHHHcCCchh----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHH
Confidence 12245888999763 25889999999999999999998 999999985
Q ss_pred ---------CceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCC
Q 019066 270 ---------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 270 ---------g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 311 (346)
|.|||+|||+ .+...|||+++ | ++|++++.|++++++..+.
T Consensus 245 ~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~-l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 245 ATLKSMRDLGNTLIVVEHDEDTMLAADYLID-IGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHCSEEEE-ECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE-ecccccccCCEEEEecCHHHHhcCch
Confidence 8999999993 34456999965 8 8999999999999987754
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=2.1e-28 Score=255.23 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC-----
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 269 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 269 (346)
+++.+++..+++... .+++++.+|||||||||+||||| ||||++||.
T Consensus 521 ~~~~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 521 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 456778889999752 25788999999999999999998 999999984
Q ss_pred -----------CceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHHHH
Q 019066 270 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELIIV 322 (346)
Q Consensus 270 -----------g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 322 (346)
|.|||+|||+ .+...||||++ | ++|+|++.|+++++...+. .++..++...
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~-l~~~~g~~~G~i~~~g~~~~~~~~~~-~~~~~~~~~~ 653 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYIID-LGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLKPI 653 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSGGGCCEEEEEECHHHHHTCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEE-ecCCcCCCCCEEEEecCHHHHHhCCc-cHHHHHHHHh
Confidence 8999999993 33456999965 9 8999999999999976543 4556665543
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=3.6e-28 Score=259.63 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=128.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|...|++++|++.. + |+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+..
T Consensus 435 ~L~~~~ls~~yg~~~---i---L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~~~--- 492 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI---L---LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFPTQ--- 492 (986)
T ss_dssp EEEEEEEEEEETTEE---E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCCCT---
T ss_pred eeEEeeEEEEECCEE---e---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCccc---
Confidence 477779999997532 4 777999999999999999999999999999995 111 222211
Q ss_pred cccccccCCCCccceeecc-cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~-~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++|++|+. ..+..+ ++.+++.+. ... . ++++.++++.+|+...
T Consensus 493 -------~~~~~~~v~q~~~~~~~~l----------tv~e~l~~~---~~~---~--~~~v~~~L~~lgL~~~------- 540 (986)
T 2iw3_A 493 -------EECRTVYVEHDIDGTHSDT----------SVLDFVFES---GVG---T--KEAIKDKLIEFGFTDE------- 540 (986)
T ss_dssp -------TTSCEEETTCCCCCCCTTS----------BHHHHHHTT---CSS---C--HHHHHHHHHHTTCCHH-------
T ss_pred -------cceeEEEEcccccccccCC----------cHHHHHHHh---hcC---H--HHHHHHHHHHcCCChh-------
Confidence 000123444442 112111 333444320 001 1 5678899999999632
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhcc
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~~ 284 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+||| +.+..+
T Consensus 541 ---------~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 541 ---------MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNV 611 (986)
T ss_dssp ---------HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHH
T ss_pred ---------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh
Confidence 46889999999999999999999 999999984 899999999 578889
Q ss_pred ccEEEEEecCCeEe-ecCCcccccc
Q 019066 285 TDRARIRTYLGELL-GIPPAKQIFD 308 (346)
Q Consensus 285 aDri~v~l~~G~iv-~~g~~~~l~~ 308 (346)
||++++ |++|+++ ..|++++++.
T Consensus 612 adrii~-L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 612 CEYIIN-YEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEE-EETTEEEEEESCHHHHHH
T ss_pred CCEEEE-EECCeeecCCCCHHHHHh
Confidence 999965 9999997 5798887754
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.3e-29 Score=255.26 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=115.1
Q ss_pred eeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE-----------ECce
Q 019066 75 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNSS 143 (346)
Q Consensus 75 ~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~-----------~~g~ 143 (346)
|++++|+.... . |++++ .+++||++||+||||||||||+|+|+|+++ |++|+|. +.|.
T Consensus 82 ~~~~~Y~~~~~--~---l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~~~~~~~~~~g~ 150 (608)
T 3j16_B 82 HVTHRYSANSF--K---LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPEWQEIIKYFRGS 150 (608)
T ss_dssp TEEEECSTTSC--E---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSCHHHHHHHTTTS
T ss_pred CeEEEECCCce--e---ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccchhhhhheecCh
Confidence 56788876544 2 45466 689999999999999999999999999999 9999873 1111
Q ss_pred eCCCcccccccccCCCCccceeecccccccchhhchHhhH---HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK---LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~---~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
++.. +.. ......+..... ..++.+.+.... .++.+++.. . .....+++.++++.+++.+
T Consensus 151 ~~~~-~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~l~~-----~---~~~~~~~~~~~l~~~gl~~ 213 (608)
T 3j16_B 151 ELQN-YFT---KMLEDDIKAIIK-----PQYVDNIPRAIKGPVQKVGELLKL-----R---MEKSPEDVKRYIKILQLEN 213 (608)
T ss_dssp THHH-HHH---HHHHTSCCCEEE-----CCCTTTHHHHCSSSSSHHHHHHHH-----H---CCSCHHHHHHHHHHHTCTG
T ss_pred hhhh-hhh---HHHHHhhhhhhc-----hhhhhhhhhhhcchhhHHHHHHhh-----h---hhhHHHHHHHHHHHcCCcc
Confidence 1100 000 000000000000 000000000000 011111110 0 0112367889999999987
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
.+++++.+||||||||++||||| ||||++||. |.|||+
T Consensus 214 -----------------~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 214 -----------------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp -----------------GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred -----------------hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 56999999999999999999999 999999984 899999
Q ss_pred Eec--hhhhccccEEEEEecCCe
Q 019066 276 VTH--GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~ 296 (346)
||| +.+..+||||++ |++|.
T Consensus 277 vtHdl~~~~~~~drv~v-l~~~~ 298 (608)
T 3j16_B 277 VEHDLSVLDYLSDFVCI-IYGVP 298 (608)
T ss_dssp ECSCHHHHHHHCSEEEE-EESCT
T ss_pred EeCCHHHHHHhCCEEEE-EeCCc
Confidence 999 578889999965 87765
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=1.9e-28 Score=249.23 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=116.2
Q ss_pred eeeEEEeCCCCceecccCceeeeEEec-CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE-----------EEC
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 141 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~-~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I-----------~~~ 141 (346)
++.+.+|+.+. ++...|.+. +||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 35677897655 333555555 999999999999999999999999999 999998 455
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
|+++.. +. +........+...+ .++.+...++..++.+++. ....++++.++++.+++..
T Consensus 71 g~~i~~-~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~l~----------~~~~~~~~~~~l~~l~l~~- 130 (538)
T 3ozx_A 71 GKEIYN-YF-KELYSNELKIVHKI-------QYVEYASKFLKGTVNEILT----------KIDERGKKDEVKELLNMTN- 130 (538)
T ss_dssp TSTTHH-HH-HHHHTTCCCEEEEC-------SCTTGGGTTCCSBHHHHHH----------HHCCSSCHHHHHHHTTCGG-
T ss_pred CeeHHH-HH-HHHhhcccchhhcc-------chhhhhhhhccCcHHHHhh----------cchhHHHHHHHHHHcCCch-
Confidence 555420 00 00000000000111 1111111111112222211 0111235678899999987
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEe
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 277 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiT 277 (346)
..++++.+|||||||||+||||| ||||++||. |+|||+||
T Consensus 131 ----------------~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vs 194 (538)
T 3ozx_A 131 ----------------LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194 (538)
T ss_dssp ----------------GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ----------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 56889999999999999999999 999999984 89999999
Q ss_pred c--hhhhccccEEEEEecCCe
Q 019066 278 H--GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~ 296 (346)
| +.+..+||+|++ |++|.
T Consensus 195 Hdl~~~~~~~d~i~v-l~~~~ 214 (538)
T 3ozx_A 195 HDLIVLDYLTDLIHI-IYGES 214 (538)
T ss_dssp SCHHHHHHHCSEEEE-EEEET
T ss_pred eChHHHHhhCCEEEE-ecCCc
Confidence 9 578889999965 87653
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=5.4e-26 Score=240.51 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC-----
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 269 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 269 (346)
+++.++++.++|... .+++++.+||||||||++|||+| ||||++||.
T Consensus 708 ~~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 708 FRALDTLREVGLGYL----------------RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc----------------cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 567899999999762 14788999999999999999998 999999973
Q ss_pred -----------CceEEEEec--hhhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 270 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 270 -----------g~tviiiTH--~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|.|||+||| +.+ ..||||++ | ++|+|++.|++++++..+. .++..++.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~-L~p~~g~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 838 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLD-IGPGAGEDGGRLVAQGTPAEVAQAAG-SVTAPYLR 838 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE-ECSSSGGGCCSEEEEECHHHHTTCTT-CSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEE-ECCCCCCCCCEEEEEcCHHHHHhCch-hHHHHHHH
Confidence 899999999 455 78999965 9 7999999999999988765 45666654
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=2.3e-26 Score=245.12 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC----
Q 019066 206 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD---- 269 (346)
Q Consensus 206 ~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~---- 269 (346)
..++.++|+.+||... .+++++.+||||||||++||||| ||||++||.
T Consensus 782 ~~~~~~~L~~vGL~~~----------------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~ 845 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYV----------------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVR 845 (916)
T ss_dssp HHHHHHHHHHTTGGGS----------------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHHHHcCCchh----------------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHH
Confidence 3567789999999752 25788999999999999999998 999999983
Q ss_pred ------------CceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 270 ------------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 270 ------------g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|.|||+|||+ .+...||+|++ | ++|+|++.|++++++..+ ++|+..++.
T Consensus 846 ~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIiv-Lgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~~~l~ 913 (916)
T 3pih_A 846 KLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIID-LGPEGGKEGGYIVATGTPEEIAKNP-HSYTGRFLK 913 (916)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSGGGCCEEEEEESHHHHHSCT-TCHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE-ecCCCCCCCCEEEEEcCHHHHHhCC-chHHHHHHH
Confidence 8999999993 33345999965 9 999999999999999886 577777764
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.7e-30 Score=254.84 Aligned_cols=177 Identities=11% Similarity=-0.021 Sum_probs=131.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-e-EEECceeC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~-I~~~g~~i 145 (346)
.++++++||++.|+ + +||++++|++++|+||||||||||+|+|+|++. |++| + |+++| +.
T Consensus 116 ~~mi~~~nl~~~y~---------~---vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg-~~ 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE---------K---IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINL-DP 177 (460)
T ss_dssp CTHHHHHHHHHHHH---------H---HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEEC-CT
T ss_pred cchhhhhhhhehhh---------c---CceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcC-Cc
Confidence 56899999998884 2 899999999999999999999999999999999 9999 9 99987 21
Q ss_pred CCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
++.+++++|+...+.-. . ..++.+|+ ++....... ...+++.++++.+|+.+
T Consensus 178 ------------~~~i~~vpq~~~l~~~~--~-----~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~----- 229 (460)
T 2npi_A 178 ------------QQPIFTVPGCISATPIS--D-----ILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLER----- 229 (460)
T ss_dssp ------------TSCSSSCSSCCEEEECC--S-----CCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSS-----
T ss_pred ------------cCCeeeeccchhhcccc--c-----ccchhhhh-cccccccCc---chHHHHHHHHHHhCCCc-----
Confidence 33567788876432110 0 00222333 322110000 01233455677788876
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHh--c-------------Cc-cccCCCC------------CceEEEEe
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT--F-------------NC-PYLSFRD------------DKPVVVVT 277 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArA--L-------------DE-Pts~Ld~------------g~tviiiT 277 (346)
..+ +.+||||||||++|||| | || ||++||. +.|+|+||
T Consensus 230 ------------~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVt 295 (460)
T 2npi_A 230 ------------INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVL 295 (460)
T ss_dssp ------------GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEE
T ss_pred ------------ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEE
Confidence 233 77999999999999999 4 99 9999985 88999999
Q ss_pred c--h------hhhccccE-----EEEEec-CCeEeecCCcccc
Q 019066 278 H--G------DLLSLTDR-----ARIRTY-LGELLGIPPAKQI 306 (346)
Q Consensus 278 H--~------~~~~~aDr-----i~v~l~-~G~iv~~g~~~~l 306 (346)
| + .+.++||| |+ +|+ +|+++ .|+++++
T Consensus 296 h~~~~~l~~~~~~~~~dr~~~~~vi-~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 296 CSETDPLWEKVKKTFGPELGNNNIF-FIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCSSCTHHHHHHHHHHHHHCGGGEE-EECCCTTCC-CCCHHHH
T ss_pred ccCchhhhHHHHHHhcccccCCEEE-EEeCCCcEE-ECCHHHH
Confidence 9 5 55689999 96 498 99999 8887655
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=4.6e-25 Score=234.35 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC-----
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 269 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 269 (346)
.++.++++.++|... .+++++.+||||||||++|||+| ||||++||.
T Consensus 823 ~~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 886 (972)
T 2r6f_A 823 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 886 (972)
T ss_dssp HHHHHHHHHTTCSSS----------------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc----------------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHH
Confidence 345788999999762 24788999999999999999998 999999983
Q ss_pred -----------CceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 270 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 270 -----------g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|.|||+|||+ .....||||++ | ++|+|++.|++++++..+. .++..++.
T Consensus 887 l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIiv-L~p~gG~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 953 (972)
T 2r6f_A 887 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYIID-LGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLK 953 (972)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-ECSSSTTSCCSEEEEESHHHHHTCTT-CHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE-EcCCCCCCCCEEEEecCHHHHHhCch-hHHHHHHH
Confidence 8999999992 33457999965 9 7999999999999987654 45555554
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=1.7e-24 Score=230.64 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC-----
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 269 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 269 (346)
.++.++++.++|... .+++++.+||||||||++|||+| ||||++||.
T Consensus 841 ~~~~~~L~~lgL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 904 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYV----------------RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRK 904 (993)
T ss_dssp HHHHHHHHHTTGGGS----------------BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc----------------cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 345788999999752 24788999999999999999998 999999983
Q ss_pred -----------CceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 270 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 270 -----------g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|.|||+|||+ .....||||++ | ++|+|++.|++++++..+. .++..++.
T Consensus 905 l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIiv-L~p~gg~~~G~Iv~~G~~~el~~~~~-~~t~~~l~ 971 (993)
T 2ygr_A 905 LLNVINGLVDKGNTVIVIEHNLDVIKTSDWIID-LGPEGGAGGGTVVAQGTPEDVAAVPA-SYTGKFLA 971 (993)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSTTSCSEEEEEECHHHHHHCTT-CHHHHHHG
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE-ECCCcCCCCCEEEEecCHHHHHhCCH-HHHHHHHH
Confidence 8999999992 33467999965 9 7999999999999987654 45555543
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=5e-23 Score=202.03 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHhc-----------CccccCCCC---------------CceEEEEec-hhhhccccEEEEEe----cC
Q 019066 246 SDVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT----YL 294 (346)
Q Consensus 246 LSgGqrQRv~IArAL-----------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l----~~ 294 (346)
||||||||++||++| ||||++||. |.|||+||| ..+...||++++ | ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~-l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK-VEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE-EEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE-EEEeccC
Confidence 699999999999988 999999983 799999999 455578999965 9 89
Q ss_pred CeEeec
Q 019066 295 GELLGI 300 (346)
Q Consensus 295 G~iv~~ 300 (346)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998875
No 66
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.87 E-value=1.2e-25 Score=213.10 Aligned_cols=175 Identities=13% Similarity=0.057 Sum_probs=116.3
Q ss_pred hHHHHHHhhhhhhhhccC------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 50 DAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
..++.++++.+++..... ..+|+++||+|.|+ .. + |+++||+|++|++++|+||||||||||+++|+
T Consensus 75 ~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~~--v---L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 75 ALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--IN--A---LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp HSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--HH--H---HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--hh--h---hccceEEecCCCEEEEECCCCCcHHHHHHHHh
Confidence 345677776654432211 12589999999997 22 4 67799999999999999999999999999999
Q ss_pred hhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHh-hhhcchhhccCCCh
Q 019066 124 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME-GVRHGELVIRRSDS 202 (346)
Q Consensus 124 gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~-~i~~~~~~~~~~~~ 202 (346)
|++ +|+|.. +++|+...+ ..++.+ |+.+.... .
T Consensus 148 gl~--------~G~I~~----------------------~v~q~~~lf-----------~~ti~~~ni~~~~~~-----~ 181 (305)
T 2v9p_A 148 HFL--------GGSVLS----------------------FANHKSHFW-----------LASLADTRAALVDDA-----T 181 (305)
T ss_dssp HHH--------TCEEEC----------------------GGGTTSGGG-----------GGGGTTCSCEEEEEE-----C
T ss_pred hhc--------CceEEE----------------------EecCccccc-----------cccHHHHhhccCccc-----c
Confidence 998 388843 233333222 223333 44443210 1
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc--Ccc---ccCCCC--CceEEE
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCP---YLSFRD--DKPVVV 275 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL--DEP---ts~Ld~--g~tvii 275 (346)
. .+.+.++.+ ++. | ++ +..|||||||| |||| +-| |++||. ...+..
T Consensus 182 ~----~~~~~i~~~-L~~-------g----------ld--g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~~ 234 (305)
T 2v9p_A 182 H----ACWRYFDTY-LRN-------A----------LD--GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYLY 234 (305)
T ss_dssp H----HHHHHHHHT-TTG-------G----------GG--TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGGG
T ss_pred H----HHHHHHHHH-hHc-------c----------CC--ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHHH
Confidence 1 334445543 333 2 23 67999999999 9998 555 999995 222334
Q ss_pred Eec-hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 276 VTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 276 iTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+|| ..+...||+| + |++|++++.|+++++
T Consensus 235 ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 LHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp GTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred HhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 589 3456789999 7 999999999999876
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=2e-21 Score=185.44 Aligned_cols=73 Identities=11% Similarity=-0.052 Sum_probs=54.5
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEE
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVV 276 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviii 276 (346)
++.|+++.++..+..+.++.+||+|||||++||||| ||||++||+ +.|+|++
T Consensus 199 l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~ 278 (322)
T 1e69_A 199 LDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI 278 (322)
T ss_dssp -----CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred ccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 344666666655566778899999999999999975 999999984 7899999
Q ss_pred ec-hhhhccccEE-EEEecCCeE
Q 019066 277 TH-GDLLSLTDRA-RIRTYLGEL 297 (346)
Q Consensus 277 TH-~~~~~~aDri-~v~l~~G~i 297 (346)
|| ..+..+||++ .++|.+|..
T Consensus 279 tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 279 THNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CCCTTGGGGCSEEEEEEESSSCE
T ss_pred ECCHHHHhhCceEEEEEEeCCEE
Confidence 99 5567789986 224777754
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.82 E-value=9.4e-21 Score=164.55 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=28.1
Q ss_pred eeeEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 94 LSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 94 ~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
||||+|++||+++|+||||||||||+|++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 499999999999999999999999999854
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.81 E-value=1.3e-19 Score=176.07 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=51.6
Q ss_pred cccCCCCCCHHHHHHHHHHHhc---------------CccccCCCC----------------CceEEEEec-hhhhcccc
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 286 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~----------------g~tviiiTH-~~~~~~aD 286 (346)
+++++.+||||||||++||||| ||||++||+ |.|||+||| ......||
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 3678999999999999998886 999999984 799999999 33467799
Q ss_pred EEEEEecCCeEee
Q 019066 287 RARIRTYLGELLG 299 (346)
Q Consensus 287 ri~v~l~~G~iv~ 299 (346)
++++ |++|++++
T Consensus 353 ~~~~-l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLR-ITGGVVVN 364 (365)
T ss_dssp CEEE-EETTEEC-
T ss_pred EEEE-EECCEEEe
Confidence 9964 99999975
No 70
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.80 E-value=2.7e-22 Score=199.20 Aligned_cols=187 Identities=11% Similarity=0.023 Sum_probs=122.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce---e
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---V 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~---~ 144 (346)
.++++++++++.|+.+.. + |+++ |+|.+||+++|+||||||||||+++|+|+.+ |+.|.|.++|+ +
T Consensus 129 ~~~l~~~~v~~~~~tg~~--v---ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~e 197 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVR--A---INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGRE 197 (438)
T ss_dssp CCTTTSCCCCSBCCCSCH--H---HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHH
T ss_pred CCceEEeccceecCCCce--E---Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHH
Confidence 357999999999974333 5 6669 9999999999999999999999999999999 99999999997 4
Q ss_pred CCCcccc-cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 145 GDGTYFL-QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 145 i~~~~~~-~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
+...... ......++.+++++|+.. ..+...++.+|+.+... ....-+ ..+
T Consensus 198 v~~~~~~~~~~~~l~r~i~~v~q~~~---------~~~~~~~v~~~~~~~ae----------------~~~~~~--~~v- 249 (438)
T 2dpy_A 198 VKDFIENILGPDGRARSVVIAAPADV---------SPLLRMQGAAYATRIAE----------------DFRDRG--QHV- 249 (438)
T ss_dssp HHHHHHTTTHHHHHHTEEEEEECTTS---------CHHHHHHHHHHHHHHHH----------------HHHTTT--CEE-
T ss_pred HHHHHHhhccccccCceEEEEECCCC---------CHHHHHHHHHHHHHHHH----------------HHHhCC--CCH-
Confidence 4200000 000001223344444211 11122245444432111 111101 111
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhcCcc--ccCCCC--------------------Cc-----eEEEE
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRD--------------------DK-----PVVVV 276 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArALDEP--ts~Ld~--------------------g~-----tviii 276 (346)
..+++ ....||+|| ||++|| +.|| |++||+ |. |++++
T Consensus 250 ------~~~ld-------~l~~lS~g~-qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~ 313 (438)
T 2dpy_A 250 ------LLIMD-------SLTRYAMAQ-REIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTE 313 (438)
T ss_dssp ------EEEEE-------CHHHHHHHH-HHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECS
T ss_pred ------HHHHH-------hHHHHHHHH-HHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEe
Confidence 11111 145799999 999999 7566 788763 32 89999
Q ss_pred echhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 277 THGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 277 TH~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
||+.-..+||+++ +|.+|+|+.++++.++...|
T Consensus 314 tHdl~~~iad~v~-~l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 314 GDDQQDPIADSAR-AILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp SSCSCCHHHHHHH-HHSSEEEEECHHHHHTTCSS
T ss_pred CCCccchhhceEE-EEeCcEEEEeCCHHHccCCC
Confidence 9954377899996 49999999999988887654
No 71
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.78 E-value=5.9e-21 Score=180.94 Aligned_cols=159 Identities=12% Similarity=0.104 Sum_probs=105.1
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccc-ccc-CCCCccceeecccc
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE-YTI-PRGSNSFSLYDTRS 170 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~-~~~-~r~~i~~~~~d~~~ 170 (346)
+.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.|+......+. ..+ .+..+++++|+...
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 165 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 165 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc
Confidence 34899999999999999999999999999999999 999999999988742100000 001 01234455444320
Q ss_pred cccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 171 LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 171 ~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
+.+. ++.+++.++... ... ..+++.+|+.+ ..++++.+||
T Consensus 166 ----------~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~-----------------~~~~~~~eLS-- 206 (302)
T 3b9q_A 166 ----------AKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI-- 206 (302)
T ss_dssp ----------CCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSS-----------------CCHHHHHHHH--
T ss_pred ----------cCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCc-----------------chhHHHHHHH--
Confidence 2222 455555432210 000 12344455544 3456677899
Q ss_pred HHHHHHHHHhc-----------CccccCCCC-----------CceEEEEec-hh----------hhccccEEEEEecCCe
Q 019066 250 KQYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-GD----------LLSLTDRARIRTYLGE 296 (346)
Q Consensus 250 qrQRv~IArAL-----------DEPts~Ld~-----------g~tviiiTH-~~----------~~~~aDri~v~l~~G~ 296 (346)
+||++||||| | ||+++|. |.|+|++|| +. +..+++.|. ++..|+
T Consensus 207 -kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~-~i~~Ge 283 (302)
T 3b9q_A 207 -ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGE 283 (302)
T ss_dssp -HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEE-EEECSS
T ss_pred -HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEE-EEeCCC
Confidence 9999999998 8 9999884 899999999 32 334566775 488886
Q ss_pred Ee
Q 019066 297 LL 298 (346)
Q Consensus 297 iv 298 (346)
.+
T Consensus 284 ~~ 285 (302)
T 3b9q_A 284 AV 285 (302)
T ss_dssp SG
T ss_pred Ch
Confidence 54
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.78 E-value=3.5e-21 Score=189.54 Aligned_cols=139 Identities=13% Similarity=0.060 Sum_probs=101.1
Q ss_pred ceeeeEEecCCc--------------------EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 92 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 92 L~~isl~i~~Ge--------------------~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.++.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC---------
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecc-----
Confidence 666999999999 999999999999999999999999 99999999987653
Q ss_pred cccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
+ .++++++. .+..+ +.+++.+. .. +.++.++++.+++.+.
T Consensus 109 ------~--~~~v~q~~-~~~~ltv~D~~g~~-----------~~----------~~~~~~~L~~~~L~~~--------- 149 (413)
T 1tq4_A 109 ------M--ERHPYKHP-NIPNVVFWDLPGIG-----------ST----------NFPPDTYLEKMKFYEY--------- 149 (413)
T ss_dssp ------C--CCEEEECS-SCTTEEEEECCCGG-----------GS----------SCCHHHHHHHTTGGGC---------
T ss_pred ------e--eEEecccc-ccCCeeehHhhccc-----------ch----------HHHHHHHHHHcCCCcc---------
Confidence 1 14566653 22233 44444321 10 1246678888888651
Q ss_pred eeechhhhcccCCCCCCHH--HHHHHHHHHhc-------------------CccccCCCC--------------------
Q 019066 231 FVVDGLAVLKSMEGDSDVE--KQYNQIVATTF-------------------NCPYLSFRD-------------------- 269 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgG--qrQRv~IArAL-------------------DEPts~Ld~-------------------- 269 (346)
+..+. ||+| |+||++||+|| ||||++||+
T Consensus 150 ---------~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 150 ---------DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp ---------SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 22233 9999 99999999998 999999874
Q ss_pred -C----ceEEEEec--h--hhhccccEEE
Q 019066 270 -D----KPVVVVTH--G--DLLSLTDRAR 289 (346)
Q Consensus 270 -g----~tviiiTH--~--~~~~~aDri~ 289 (346)
| .+++++|| . .+..+||++.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 1 35778898 3 3788888883
No 73
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.77 E-value=7.1e-21 Score=171.07 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=43.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|++| ++||+++|+||||||||||+++|+|+ + |++|+|. +.++. . .....++.++|++|+.
T Consensus 16 l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~--~~~~~---~--~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 16 VDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVS--RIILT---R--PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCS--EEEEE---E--CSCCTTCCCCSSCC--
T ss_pred HHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeee--eEEec---C--CchhhhcceEEecCCH
Confidence 5555 89999999999999999999999999 9 9999994 22221 0 0011244567777765
No 74
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=4.1e-21 Score=173.35 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=33.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++.
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~~ 58 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSCT 58 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCEE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eeccc
Confidence 77799999999999999999999999999999977 5 88998 76653
No 75
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.75 E-value=6e-21 Score=184.15 Aligned_cols=190 Identities=10% Similarity=-0.008 Sum_probs=116.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++++++.|+.+. .+ |+++ |+|.+||+++|+||||||||||+++|+|+.+ |+.|.|.+.|++..
T Consensus 43 ~~~i~~~~l~~~~~tg~--~a---ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~- 110 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGV--RA---IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGR- 110 (347)
T ss_dssp SCSTTCCCCCSEECCSC--HH---HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHH-
T ss_pred CCCeeecccceecCCCC--EE---EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHH-
Confidence 35799999999997443 25 5669 9999999999999999999999999999999 99999999886521
Q ss_pred cccccccccCCCCccceeecc--cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT--RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~--~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
+.. ..+++ +... .....++++... +. ..++..++..+.+.....+
T Consensus 111 -----ev~---~~i~~-~~~~~~~~~v~~~~~~~~--------------------~~---~~r~~~~~~~~~~ae~~~~- 157 (347)
T 2obl_A 111 -----EVN---EFLAL-LPQSTLSKCVLVVTTSDR--------------------PA---LERMKAAFTATTIAEYFRD- 157 (347)
T ss_dssp -----HHH---HHHTT-SCHHHHTTEEEEEECTTS--------------------CH---HHHHHHHHHHHHHHHHHHT-
T ss_pred -----HHH---HHHHh-hhhhhhhceEEEEECCCC--------------------CH---HHHHHHHHHHHHHHHHHHh-
Confidence 000 00001 0000 000001111100 00 0011111111111000000
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhcCcc-ccCCCC------------------Cc-----eEEEEechhh
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFRD------------------DK-----PVVVVTHGDL 281 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArALDEP-ts~Ld~------------------g~-----tviiiTH~~~ 281 (346)
.|.+..+ +-+.+..||+|| ||+++| +-+.| |+|||+ |. ||+++||+.-
T Consensus 158 -~~~~vl~-----~ld~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 158 -QGKNVLL-----MMDSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp -TTCEEEE-----EEETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred -ccccHHH-----HHhhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence 0000000 113466899999 899999 33666 578652 55 8999999544
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
..+||++.+ +.+|+|+.+++..++...|.
T Consensus 230 ~~i~d~v~~-i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 230 DPIGDEVRS-ILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp CHHHHHHHH-HCSEEEEBCHHHHTTTCSSC
T ss_pred ChhhhheEE-eeCcEEEEeCCHHHcCCCCC
Confidence 778999965 99999999999888765553
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.75 E-value=2e-20 Score=174.61 Aligned_cols=127 Identities=14% Similarity=0.092 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccc-hhhchHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMI 182 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~ 182 (346)
.++|+||||||||||+|+|+|++. |++|+|.++|+++.. ...++.+++++|+...+..+ |.+++.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~-------~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPK-------TVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC-------CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCc-------ceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 589999999999999999999999 999999999987641 12234567888876655554 56665432
Q ss_pred HHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc--
Q 019066 183 KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 260 (346)
Q Consensus 183 ~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-- 260 (346)
..... ....+.+.+.+. .. +.+.++.+|||||+||++||||+
T Consensus 72 -----------~~~~~----~~~~~~i~~~~~----~~-----------------~~~~~~~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 72 -----------DQINN----ENCWEPIEKYIN----EQ-----------------YEKFLKEEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp -----------CCSBC----TTCSHHHHHHHH----HH-----------------HHHHHHHHSCTTCCSSCCCCSCCEE
T ss_pred -----------hhccc----HHHHHHHHHHHH----HH-----------------HHhhhHHhcCcccchhhhhheeeee
Confidence 11111 111122222222 11 23555779999999999999998
Q ss_pred ----CccccCCCC-----------CceEEEEec
Q 019066 261 ----NCPYLSFRD-----------DKPVVVVTH 278 (346)
Q Consensus 261 ----DEPts~Ld~-----------g~tviiiTH 278 (346)
|||+.+|++ ..++|+|.|
T Consensus 116 lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~ 148 (270)
T 3sop_A 116 LYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIA 148 (270)
T ss_dssp EEEECCCSSSCCHHHHHHHHHHHTTSEEEEEET
T ss_pred eEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEe
Confidence 999999863 577777777
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.74 E-value=5.2e-20 Score=164.30 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.| .+|++||+++|+||||||||||+|+|+|+++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 666 7999999999999999999999999999985
No 78
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=3.2e-21 Score=195.62 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=53.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeE-EecCCcEEEEEcCCCCCHHHHHHH--HhhhccCCCCCCCCceEEECceeC
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl-~i~~Ge~iaIvGpnGsGKSTLl~~--L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
++++.+++.+.+++ .. + |++||| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+.
T Consensus 11 ~~~~~~~~~~~~~g-~~--~---Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 11 NNSEHQAIAKMRTM-IE--G---FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEET 79 (525)
T ss_dssp ---CCSSCCEECCC-CT--T---HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC
T ss_pred CCccccccccccCC-ch--h---HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 34666777654433 22 5 666999 999999999999999999999999 789999 8999999999773
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=3.2e-20 Score=179.64 Aligned_cols=158 Identities=11% Similarity=0.107 Sum_probs=104.7
Q ss_pred eeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccccccc-cc-CCCCccceeeccc-c
Q 019066 94 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY-TI-PRGSNSFSLYDTR-S 170 (346)
Q Consensus 94 ~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~-~~-~r~~i~~~~~d~~-~ 170 (346)
.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.|+......+.. .+ .+..+++++|+.. .
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~ 223 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 223 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccccc
Confidence 4899999999999999999999999999999999 9999999999887421000000 01 1223455555432 2
Q ss_pred cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 171 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 171 ~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
+ ...++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 224 ~----------p~~tv~e~l~~~~~~--~~d--------~~lldt~Gl~~-----------------~~~~~~~eLS--- 263 (359)
T 2og2_A 224 K----------AATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI--- 263 (359)
T ss_dssp C----------HHHHHHHHHHHHHHT--TCS--------EEEEECCCCSS-----------------CCHHHHHHHH---
T ss_pred C----------hhhhHHHHHHHHHhC--CCH--------HHHHHhcCCCh-----------------hhhhHHHHHH---
Confidence 2 122455555432210 000 01234445544 3456677899
Q ss_pred HHHHHHHHhc-----------CccccCCCC-----------CceEEEEec-hh----------hhccccEEEEEecCCeE
Q 019066 251 QYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-GD----------LLSLTDRARIRTYLGEL 297 (346)
Q Consensus 251 rQRv~IArAL-----------DEPts~Ld~-----------g~tviiiTH-~~----------~~~~aDri~v~l~~G~i 297 (346)
+||++||||| | ||+++|. +.|+|++|| +. +..+++.|. ++..|+.
T Consensus 264 kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~-~ig~Ge~ 341 (359)
T 2og2_A 264 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGEA 341 (359)
T ss_dssp HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEE-EEECSSS
T ss_pred HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEE-EEeCCCC
Confidence 9999999998 8 9999884 899999999 32 334567785 4777764
Q ss_pred e
Q 019066 298 L 298 (346)
Q Consensus 298 v 298 (346)
+
T Consensus 342 ~ 342 (359)
T 2og2_A 342 V 342 (359)
T ss_dssp G
T ss_pred h
Confidence 3
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.70 E-value=2.1e-20 Score=177.84 Aligned_cols=172 Identities=10% Similarity=-0.083 Sum_probs=113.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEE-----------------------ecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYD-----------------------VPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~-----------------------i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
...|++++|++.|.. + +++++|. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~p-----~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYLP-----L---ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHHH-----H---HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhhh-----H---HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 346999999999942 2 3445553 89999999999999999999999999
Q ss_pred hccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHH
Q 019066 125 VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS 204 (346)
Q Consensus 125 l~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~ 204 (346)
+++ |+.|. +.+++++|+...+. .++.+|+.+... ...+...
T Consensus 113 ll~-----~~~G~---------------------~~v~~v~qd~~~~~-----------~t~~e~~~~~~~--~g~~~~~ 153 (312)
T 3aez_A 113 LLA-----RWDHH---------------------PRVDLVTTDGFLYP-----------NAELQRRNLMHR--KGFPESY 153 (312)
T ss_dssp HHH-----TSTTC---------------------CCEEEEEGGGGBCC-----------HHHHHHTTCTTC--TTSGGGB
T ss_pred hcc-----ccCCC---------------------CeEEEEecCccCCc-----------ccHHHHHHHHHh--cCCChHH
Confidence 999 86553 12356666654332 234444433110 0111222
Q ss_pred HHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC---C---
Q 019066 205 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---D--- 269 (346)
Q Consensus 205 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld---~--- 269 (346)
..+.+.++++.++ .. ..+.++.+|||||+||+++|||+ |||++.+| .
T Consensus 154 d~~~~~~~L~~l~-~~-----------------~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~ 215 (312)
T 3aez_A 154 NRRALMRFVTSVK-SG-----------------SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVS 215 (312)
T ss_dssp CHHHHHHHHHHHH-TT-----------------CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGG
T ss_pred HHHHHHHHHHHhC-CC-----------------cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHH
Confidence 3456777788877 33 22455679999999999999998 99999975 1
Q ss_pred ---CceEEEEec--h-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ---DKPVVVVTH--G-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ---g~tviiiTH--~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+ |+|+| + ...++++|.. .+.+++ ..+++.++.+
T Consensus 216 ~~~D~~-I~V~a~~~~~~~R~i~R~~-~~rd~~---~r~~~~~~~~ 256 (312)
T 3aez_A 216 DLFDFS-LYVDARIEDIEQWYVSRFL-AMRTTA---FADPESHFHH 256 (312)
T ss_dssp GGCSEE-EEEEECHHHHHHHHHHHHH-HHTTTG---GGSTTSTTGG
T ss_pred HhcCcE-EEEECCHHHHHHHHHHHHH-HHHhcc---ccCcchhhhc
Confidence 444 55566 3 2456677773 366655 2345555543
No 81
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.70 E-value=2.4e-18 Score=150.84 Aligned_cols=49 Identities=8% Similarity=-0.051 Sum_probs=40.8
Q ss_pred cccCCCCCCHHHHHHHHHHHh-----c---------Cc--cccCCCC-------------CceEEEEec-----hhhhcc
Q 019066 239 LKSMEGDSDVEKQYNQIVATT-----F---------NC--PYLSFRD-------------DKPVVVVTH-----GDLLSL 284 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArA-----L---------DE--Pts~Ld~-------------g~tviiiTH-----~~~~~~ 284 (346)
.++++.+||||||||++|||| | || ||++||+ +.|+|++|| +.+..+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 467788999999999999996 6 99 9999873 677999996 356677
Q ss_pred ccE
Q 019066 285 TDR 287 (346)
Q Consensus 285 aDr 287 (346)
|+|
T Consensus 150 ~~r 152 (178)
T 1ye8_A 150 RRL 152 (178)
T ss_dssp HTC
T ss_pred Hhc
Confidence 776
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.67 E-value=2.7e-18 Score=164.59 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=45.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~ 208 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSC
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCee
Confidence 666999999999999999999999999999999999 999999998754
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.66 E-value=5.1e-16 Score=150.28 Aligned_cols=63 Identities=8% Similarity=-0.052 Sum_probs=54.9
Q ss_pred ccCCC-CCCHHHHHHHHHHHhc------------------CccccCCCC-------------CceEEEEec-hhhhcccc
Q 019066 240 KSMEG-DSDVEKQYNQIVATTF------------------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTD 286 (346)
Q Consensus 240 ~~~~~-~LSgGqrQRv~IArAL------------------DEPts~Ld~-------------g~tviiiTH-~~~~~~aD 286 (346)
++++. .||||||||++||++| ||||++||+ +.|+|++|| +. .||
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~---~~~ 335 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAP---GAA 335 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCT---TCS
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccc---cCC
Confidence 34566 7999999999999998 999999994 578999999 33 899
Q ss_pred EEEEEecCCeEeecCCcccc
Q 019066 287 RARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 287 ri~v~l~~G~iv~~g~~~~l 306 (346)
+++ +|++|+++..|+++++
T Consensus 336 ~i~-~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTL-RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEE-EEETTEEEECCCTTTS
T ss_pred EEE-EEECCEEEecCCHHHH
Confidence 996 4999999999999877
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.61 E-value=1.6e-16 Score=161.12 Aligned_cols=143 Identities=13% Similarity=0.159 Sum_probs=95.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceee-eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCce--EEECceeCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ--VTYNSSVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~i-sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~--I~~~g~~i~ 146 (346)
.+++++++..|++ |+.+ +..|++|++++|+||||||||||+++++|+.. +. |. +++.
T Consensus 257 ~~~~~~l~~g~~~---------ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~~vi~~~----- 316 (525)
T 1tf7_A 257 RSSNVRVSSGVVR---------LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KERAILFA----- 316 (525)
T ss_dssp CCCCCEECCSCHH---------HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TCCEEEEE-----
T ss_pred ccccceeecChHH---------HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CCCEEEEE-----
Confidence 4566777655432 2222 55899999999999999999999999999998 64 53 2322
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
+++... .+.... .. ++ .+ +.+ +...|+..
T Consensus 317 ------------------~ee~~~---------~l~~~~--~~--~g------~~-------~~~-~~~~g~~~------ 345 (525)
T 1tf7_A 317 ------------------YEESRA---------QLLRNA--YS--WG------MD-------FEE-MERQNLLK------ 345 (525)
T ss_dssp ------------------SSSCHH---------HHHHHH--HT--TS------CC-------HHH-HHHTTSEE------
T ss_pred ------------------EeCCHH---------HHHHHH--HH--cC------CC-------HHH-HHhCCCEE------
Confidence 222100 000000 00 00 01 011 22344433
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------------CceEEEE
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------------DKPVVVV 276 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------------g~tviii 276 (346)
+.+.++.+|||||+||+++|+++ | ||++||. |+|+|++
T Consensus 346 -----------~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 346 -----------IVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp -----------ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----------EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34677889999999999999998 9 9999763 8999999
Q ss_pred echh------------hhccccEEEEEecCCe
Q 019066 277 THGD------------LLSLTDRARIRTYLGE 296 (346)
Q Consensus 277 TH~~------------~~~~aDri~v~l~~G~ 296 (346)
||+. +..+||+|++ |++|+
T Consensus 414 sh~~~~~~~~~~~~~~l~~~~D~vi~-L~~ge 444 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHISTITDTIIL-LQYVE 444 (525)
T ss_dssp EECSSSSCCCSSCSSCCTTTCSEEEE-EEEEE
T ss_pred ECcccccCcccccCcccceeeeEEEE-EEEEE
Confidence 9943 4578999964 98887
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.60 E-value=2.8e-16 Score=147.30 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=42.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECce
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSS 143 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~ 143 (346)
|+++++.|++|++++|+||||||||||++.|++... +++| .|.+.+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~~ 72 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAML 72 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEES
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEeC
Confidence 777999999999999999999999999999999998 8878 7766543
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.58 E-value=4.1e-16 Score=166.41 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC-------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~------- 269 (346)
+..++|..+||... .+++++.+|||||+||++||||| ||||++||+
T Consensus 443 ~~~~~L~~vgL~~l----------------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~ 506 (916)
T 3pih_A 443 KRLEFLVDVGLEYL----------------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLI 506 (916)
T ss_dssp HHHHHHHTTTCTTC----------------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHH
T ss_pred HHHHHHHHcCCccc----------------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHH
Confidence 44567888999752 25888999999999999999999 999999984
Q ss_pred ---------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHH
Q 019066 270 ---------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 270 ---------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
|.|||+||| ..+...||+|++ | ++|+++..|++++++..+....+..++
T Consensus 507 ~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~-lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l 571 (916)
T 3pih_A 507 KTLKKLRDLGNTVIVVEHDEEVIRNADHIID-IGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYL 571 (916)
T ss_dssp HHHHHTTTTTCEEEEECCCHHHHHTCSEEEE-EESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE-EcCCcccCCCEEEEeechhhhhcCchhcchhhhh
Confidence 899999999 333445999964 9 999999999999999887655544443
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.58 E-value=4.3e-16 Score=168.48 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=90.5
Q ss_pred CcEEEee-----eEEEeCCCCceecccCceeeeEEecC-------CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc
Q 019066 69 SLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 136 (346)
Q Consensus 69 ~~l~~~~-----l~~~y~~~~~~~~l~~L~~isl~i~~-------Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G 136 (346)
++|+++| |++.|.++.. + ++|++|++++ |++++|+||||||||||+|+| |++. +-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~--v---~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~-- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDF--I---PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VM-- 815 (1022)
T ss_dssp CCEEEEEECCCC------CCCC--C---CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HH--
T ss_pred ceEEEEeccccEEEEEecCCce--E---eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HH--
Confidence 4799999 9999944333 3 7789999987 999999999999999999999 9987 41
Q ss_pred eEEECceeCCCcccccccccCCCCcc-ceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHH
Q 019066 137 QVTYNSSVGDGTYFLQEYTIPRGSNS-FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 215 (346)
Q Consensus 137 ~I~~~g~~i~~~~~~~~~~~~r~~i~-~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (346)
. +++ |++++...+ .+.+++ .. .
T Consensus 816 ---------a-------------qiG~~Vpq~~~~l--~v~d~I-----------~~----------------------r 838 (1022)
T 2o8b_B 816 ---------A-------------QMGCYVPAEVCRL--TPIDRV-----------FT----------------------R 838 (1022)
T ss_dssp ---------H-------------TTTCCEESSEEEE--CCCSBE-----------EE----------------------E
T ss_pred ---------h-------------heeEEeccCcCCC--CHHHHH-----------HH----------------------H
Confidence 0 113 666654211 122222 10 1
Q ss_pred cCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------
Q 019066 216 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------- 269 (346)
Q Consensus 216 ~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------- 269 (346)
+|+.+. ..+..+++|+++++ +++|+++ |||++|+|.
T Consensus 839 ig~~d~-----------------~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~ 900 (1022)
T 2o8b_B 839 LGASDR-----------------IMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET 900 (1022)
T ss_dssp CC--------------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHH-----------------HhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc
Confidence 122221 12223467777665 8888887 999999762
Q ss_pred -CceEEEEec--hhhhccccEEEEEecCCeEe--ecCCc
Q 019066 270 -DKPVVVVTH--GDLLSLTDRARIRTYLGELL--GIPPA 303 (346)
Q Consensus 270 -g~tviiiTH--~~~~~~aDri~v~l~~G~iv--~~g~~ 303 (346)
|.++|++|| +.+..+||++.+ + +|++. ..|.+
T Consensus 901 ~g~~vl~~TH~~el~~~~~d~~~v-~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 901 IKCRTLFSTHYHSLVEDYSQNVAV-R-LGHMACMVENEC 937 (1022)
T ss_dssp SCCEEEEECCCHHHHHHTSSCSSE-E-EEEEEEC-----
T ss_pred CCCEEEEEeCCHHHHHHhCCccee-e-cCeEEEEEecCc
Confidence 789999999 567778999954 4 58877 44443
No 88
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.58 E-value=1e-17 Score=158.39 Aligned_cols=144 Identities=11% Similarity=0.098 Sum_probs=64.9
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh-ccCCCCCCCCceEEECceeCCCccccc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQ 152 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl-~~~~~~~p~~G~I~~~g~~i~~~~~~~ 152 (346)
+||++.|++.. + +++++|+| +|+||||||||||+++|.|. .. |++| |.++|.++..
T Consensus 2 ~~l~~~~~~~~---~---l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~~----- 58 (301)
T 2qnr_A 2 SNLPNQVHRKS---V---KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIER----- 58 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECCEE---E---EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccCC-----
Confidence 47899997643 4 66699998 99999999999999999997 66 8889 8888876541
Q ss_pred ccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 153 EYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 153 ~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
....+.++++++.......+ +.+++.+.... .+ ....+..+..+. +
T Consensus 59 --t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~--~~------------~e~~~~l~~~l~------~----------- 105 (301)
T 2qnr_A 59 --TVQIEASTVEIEERGVKLRLTVVDTPGYGDAI--NC------------RDCFKTIISYID------E----------- 105 (301)
T ss_dssp --------CEEEEC---CCEEEEEEEEC-------------------------CTTHHHHHH------H-----------
T ss_pred --cceEeeEEEEecCCCcccCcchhhhhhhhhhc--Cc------------HHHHHHHHHHHH------H-----------
Confidence 11122345666654433344 55555432110 00 000000111111 1
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc-----CccccC-CCC-------------CceEEEEech
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF-----NCPYLS-FRD-------------DKPVVVVTHG 279 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----DEPts~-Ld~-------------g~tviiiTH~ 279 (346)
..+++..++|||||||+.+|||+ ||||++ ||+ +.++|+.+|+
T Consensus 106 ------~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 106 ------QFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp ------HHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGG
T ss_pred ------HHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 23456779999999999999976 999985 763 5677777884
No 89
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.57 E-value=7.9e-14 Score=133.66 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=45.4
Q ss_pred hcccCCCCCCHHHHH------HHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhccc
Q 019066 238 VLKSMEGDSDVEKQY------NQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 285 (346)
Q Consensus 238 ~~~~~~~~LSgGqrQ------Rv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~~a 285 (346)
..++++.+||||||| |+++|+|| ||||++||+ +.|+|+||| ..+...|
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~ 320 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhC
Confidence 457889999999999 55666666 999999984 679999999 5677889
Q ss_pred cEEEEEec
Q 019066 286 DRARIRTY 293 (346)
Q Consensus 286 Dri~v~l~ 293 (346)
|++++ |.
T Consensus 321 d~~~~-l~ 327 (339)
T 3qkt_A 321 DHVIR-IS 327 (339)
T ss_dssp SEEEE-EE
T ss_pred CEEEE-EE
Confidence 99964 64
No 90
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.57 E-value=2.3e-17 Score=159.78 Aligned_cols=182 Identities=10% Similarity=0.024 Sum_probs=103.1
Q ss_pred ceeeeEEecC--CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC----ceEEECc----eeCCCcccccccccCCCCc
Q 019066 92 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNS----SVGDGTYFLQEYTIPRGSN 161 (346)
Q Consensus 92 L~~isl~i~~--Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~----G~I~~~g----~~i~~~~~~~~~~~~r~~i 161 (346)
.+.|+++|.+ |+.++|+||||||||||+++|+|+++ |++ |+|++++ .++.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~~~~~--------------- 217 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGGDEQA--------------- 217 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSSCTTS---------------
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCCCccc---------------
Confidence 3459999999 99999999999999999999999999 888 8887643 2211
Q ss_pred cceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce--eeeee-chhhh
Q 019066 162 SFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF--VIFVV-DGLAV 238 (346)
Q Consensus 162 ~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~v-~e~~~ 238 (346)
+...+. ..+.+++|+..++..++.+|+.+... ......+...+........+...+.+ ++.++ ||...
T Consensus 218 -~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~ 288 (365)
T 1lw7_A 218 -MQYSDY-PQMALGHQRYIDYAVRHSHKIAFIDT-------DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT 288 (365)
T ss_dssp -SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEESS-------CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCC
T ss_pred -CChhHH-HHHHHHHHHHHHHHHhccCCEEEEeC-------CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 111111 11334566665555677777765321 11111222222222222222222221 33322 54210
Q ss_pred -cccCCCCCCHHHHHHHHHHHhcCccccCCCCCceEEEEec-hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 239 -LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 239 -~~~~~~~LSgGqrQRv~IArALDEPts~Ld~g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
.......+|+||+||.+|+|+|.+-.. ..+.++|+++| ....++++++.+ +++ ++..++++++.
T Consensus 289 p~~~~g~~~sld~~~r~~l~~~l~~l~~--~~~~~ililde~~~~~r~~~~i~~-i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 289 EWVDDGLRSLGSQKQRQQFQQLLKKLLD--KYKVPYIEIESPSYLDRYNQVKAV-IEK--VLNEEEISELQ 354 (365)
T ss_dssp C-----------CCSHHHHHHHHHHHHH--GGGCCCEEEECSSHHHHHHHHHHH-HHH--HTSCCCCSSCC
T ss_pred CcccCCCcCCccHHHHHHHHHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHH-HHH--HhcccchhHhh
Confidence 001123689999999999999832211 01567999999 677788888854 643 56666666653
No 91
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.56 E-value=3e-15 Score=151.37 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=46.7
Q ss_pred ccCCCCC-CHHHHHHHHHHHhc-----------CccccCCCC---------------CceEEEEec-hhhhccccEEEEE
Q 019066 240 KSMEGDS-DVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 291 (346)
Q Consensus 240 ~~~~~~L-SgGqrQRv~IArAL-----------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~ 291 (346)
.+++..| ||||+||++||||| ||||++||. |.|||+||| ..+...||++++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~- 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK- 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEE-
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-
Confidence 4667788 99999999999998 999999985 889999999 344456999965
Q ss_pred ecCCe
Q 019066 292 TYLGE 296 (346)
Q Consensus 292 l~~G~ 296 (346)
|+++.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 86553
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.56 E-value=4.9e-16 Score=144.12 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=50.8
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-CceEEECceeCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-~G~I~~~g~~i~ 146 (346)
++++++|++. . + |+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.++.
T Consensus 5 ~~~l~~l~~~----~---v---l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 5 IPEFKKLGLP----D---K---VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE 65 (261)
T ss_dssp -CCGGGSSCC----T---H---HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSCC
T ss_pred CCChHHCCCH----H---H---HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcce
Confidence 4677777753 1 3 66798 89999999999999999999999999999 88 999999987763
No 93
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.55 E-value=1.5e-16 Score=150.73 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCC
Confidence 799999999999999999999999999 99999999999875
No 94
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.53 E-value=1.2e-15 Score=163.36 Aligned_cols=62 Identities=8% Similarity=-0.032 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHhc-----------CccccCCCC------------------CceEEEEec-hhhhccccEEEEEecC
Q 019066 245 DSDVEKQYNQIVATTF-----------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDRARIRTYL 294 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL-----------DEPts~Ld~------------------g~tviiiTH-~~~~~~aDri~v~l~~ 294 (346)
.+|+++.++..+|+++ |||++|+|. |.++|++|| ..+..+||++.. +.+
T Consensus 721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~-v~n 799 (934)
T 3thx_A 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT-VNN 799 (934)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTT-EEE
T ss_pred hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccce-eEe
Confidence 4555555555555555 999999873 799999999 567789999964 999
Q ss_pred CeEeecCCccccc
Q 019066 295 GELLGIPPAKQIF 307 (346)
Q Consensus 295 G~iv~~g~~~~l~ 307 (346)
|++...++.+++.
T Consensus 800 g~v~~~~~~~~l~ 812 (934)
T 3thx_A 800 LHVTALTTEETLT 812 (934)
T ss_dssp EEEEEEEETTEEE
T ss_pred eEEEEEecCCcEE
Confidence 9999887776653
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.53 E-value=6.7e-16 Score=139.90 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=44.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeE--EecCCcEEEEEcCCCCCHHHHHHHHh--hhccCCCCCCCCceEEECcee
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDY--DVPKTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl--~i~~Ge~iaIvGpnGsGKSTLl~~L~--gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++++++..|+. |+.+ + .|++|++++|+||||||||||+++|+ ++.. +..|.+++++.+
T Consensus 6 ~~~~~~i~tg~~~---------lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~~ 69 (251)
T 2ehv_A 6 YQPVRRVKSGIPG---------FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEE 69 (251)
T ss_dssp --CCCEECCSCTT---------TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred ccccceeecCCHh---------HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEccC
Confidence 4566666665543 3333 2 68999999999999999999999999 7756 667778877654
No 96
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.52 E-value=1.9e-17 Score=144.29 Aligned_cols=112 Identities=16% Similarity=-0.005 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC---CceEEECceeCCCcccccccccCCCCccceeecccccccchhhch
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 179 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~ 179 (346)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.++..........+..+.+++. ..++.|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~-------~~~~~~~~ 70 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGAD-------VVIASPVK 70 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------------CHHHHHHHHTCE-------EEEECSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccccCCccchhHHHHHhcCCc-------eEEECCCc
Confidence 5899999999999999999999999 87 899999998854100000000000112211 01223332
Q ss_pred HhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc-ccceeeeeechhhhcccCCCCCCHHHHHHHHHHH
Q 019066 180 NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 258 (346)
Q Consensus 180 ~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IAr 258 (346)
.++ + . . ...+. .+++.+.+.. +| ||+|+|+|. |||||+||++|||
T Consensus 71 ~~~---i----~-------~-~~~~~---------~a~l~~~i~~~l~-g~dt~i~Eg---------lSgGq~qri~lAR 116 (171)
T 2f1r_A 71 LAF---I----R-------R-VSEEE---------GNDLDWIYERYLS-DYDLVITEG---------FSKAGKDRIVVVK 116 (171)
T ss_dssp EEE---E----E-------E-CCHHH---------HTCHHHHHHHHTT-TCSEEEEES---------CGGGCCCEEEECS
T ss_pred EEE---E----e-------c-CChhh---------hhCHHHHHHhhCC-CCCEEEECC---------cCCCCCcEEEEEe
Confidence 221 0 0 0 00110 3455555666 77 899999984 8999999999999
Q ss_pred hc
Q 019066 259 TF 260 (346)
Q Consensus 259 AL 260 (346)
|+
T Consensus 117 al 118 (171)
T 2f1r_A 117 KP 118 (171)
T ss_dssp SG
T ss_pred cc
Confidence 98
No 97
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.52 E-value=1.8e-15 Score=133.61 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=35.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
+|+++|++|.|+. . + +++ |++.+|+.++|+|+||||||||+|.|+|........|+.|.+.+
T Consensus 3 ~l~~~~~~~~~~~--~--~---l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA--P--D---IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE--S--S---GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec--C--C---HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 5899999999963 2 2 666 89999999999999999999999999998710001177887765
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.50 E-value=2.1e-14 Score=152.97 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC---
Q 019066 204 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--- 269 (346)
Q Consensus 204 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~--- 269 (346)
+..+++ ++|..+||... .+++++.+|||||+||++||++| ||||++||+
T Consensus 480 ei~~Rl-~~L~~vGL~~l----------------~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~ 542 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542 (972)
T ss_dssp HHHHHH-HHHHHHTCTTS----------------BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGH
T ss_pred HHHHHH-HHhhhCCCCcc----------------ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHH
Confidence 445555 56899999752 25889999999999999999998 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 311 (346)
|.|||+|+| ......||||++ | ++|++++.|++++++..+.
T Consensus 543 ~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~-LgpgaG~~gG~iv~~G~~~e~~~~~~ 603 (972)
T 2r6f_A 543 DRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID-IGPGAGIHGGEVVAAGTPEEVMNDPN 603 (972)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE-ECSSSGGGCCSEEEEECTTTTTTCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-eCCCccCCCCEEEEecCHHHHHhhhH
Confidence 899999999 334457999964 8 8999999999999987654
No 99
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.49 E-value=1.2e-14 Score=154.08 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC--
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD-- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~-- 269 (346)
.+..+++. .|..+||... .+++++.+|||||+|||+||++| ||||++||+
T Consensus 354 ~ei~~rl~-~L~~vGL~~l----------------~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~ 416 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYL----------------GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD 416 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTS----------------BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG
T ss_pred HHHHHHHH-HHHhCCCCcC----------------CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH
Confidence 34556665 6889999852 15889999999999999999999 999999974
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCC
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 311 (346)
|.|||+|+| ..+...||+|++ | ++|+++..|+++++...+.
T Consensus 417 ~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~-lgpgaG~~~G~iv~~g~~~~~~~~~~ 478 (842)
T 2vf7_A 417 TEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD-VGPEAGEKGGEILYSGPPEGLKHVPE 478 (842)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE-ECSSSGGGCCSEEEEECGGGGGGCTT
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE-eCCCcccCCCEEEEecCHHHHHhchH
Confidence 899999999 345567999965 9 8999999999999987654
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.48 E-value=1.7e-13 Score=135.33 Aligned_cols=55 Identities=11% Similarity=-0.010 Sum_probs=45.5
Q ss_pred hcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC----------------CceEEEEec-hhhhccccE
Q 019066 238 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDR 287 (346)
Q Consensus 238 ~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDr 287 (346)
...+++..||||||||++||++| |||+++||+ +.++|+||| ......||+
T Consensus 326 ~~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~ 405 (430)
T 1w1w_A 326 KRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 405 (430)
T ss_dssp CCCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSE
T ss_pred ccccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCE
Confidence 34456678999999999999998 999999984 579999999 556678999
Q ss_pred EEEEec
Q 019066 288 ARIRTY 293 (346)
Q Consensus 288 i~v~l~ 293 (346)
+++ +.
T Consensus 406 ~~~-~~ 410 (430)
T 1w1w_A 406 LVG-VY 410 (430)
T ss_dssp EEE-EE
T ss_pred EEE-EE
Confidence 965 53
No 101
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.48 E-value=2.5e-15 Score=137.41 Aligned_cols=134 Identities=12% Similarity=0.002 Sum_probs=74.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||++++|+++||+||||||||||+++|+|++. . +.++ . .++.+++++++. .+
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-----~----~~~~--~------------~~~~i~~v~~d~-~~ 70 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-----Q----NEVE--Q------------RQRKVVILSQDR-FY 70 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT-----G----GGSC--G------------GGCSEEEEEGGG-GB
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-----h----hccc--c------------cCCceEEEeCCc-Cc
Confidence 666999999999999999999999999999999873 1 1121 0 112345666663 22
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
..+ +.++..+.. ....+. .+.....+.+.+.++.+ .+ ....++..||+||
T Consensus 71 ~~l~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~L~~l--~~-----------------~~~~~~~~ls~g~ 121 (245)
T 2jeo_A 71 KVLTAEQKAKALK----GQYNFD------HPDAFDNDLMHRTLKNI--VE-----------------GKTVEVPTYDFVT 121 (245)
T ss_dssp CCCCHHHHHHHHT----TCCCTT------SGGGBCHHHHHHHHHHH--HT-----------------TCCEEECCEETTT
T ss_pred cccCHhHhhhhhc----cCCCCC------CcccccHHHHHHHHHHH--HC-----------------CCCeecccccccc
Confidence 122 233222110 000000 00111123344455543 11 1245677999999
Q ss_pred HHHHHHHHhc---------CccccCCC------CCceEEEEech
Q 019066 251 QYNQIVATTF---------NCPYLSFR------DDKPVVVVTHG 279 (346)
Q Consensus 251 rQRv~IArAL---------DEPts~Ld------~g~tviiiTH~ 279 (346)
+||+++ +++ |||....+ .+.+|+++||+
T Consensus 122 ~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~ 164 (245)
T 2jeo_A 122 HSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDS 164 (245)
T ss_dssp TEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCH
T ss_pred cCccCc-eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCH
Confidence 999987 344 88887755 48899999993
No 102
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=1.8e-15 Score=130.03 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=63.5
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+.+++++.|++. . + ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++..
T Consensus 9 ~~~~~~~~~g~~-~--~---l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~i~~---- 72 (158)
T 1htw_A 9 PDEFSMLRFGKK-F--A---EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYTLVE---- 72 (158)
T ss_dssp CSHHHHHHHHHH-H--H---HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTTCEE----
T ss_pred CCHHHHHHHHHH-H--H---HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEeeee----
Confidence 345667777542 2 4 66699999999999999999999999999999998 468999999987641
Q ss_pred cccccCCCCccceeecccccccc-hhhchH
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDD-ASDNIN 180 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~ 180 (346)
.+... .+++|....+ .+ +.+++.
T Consensus 73 -~~~~~----~~~~q~~~l~-~ltv~e~l~ 96 (158)
T 1htw_A 73 -EYNIA----GKMIYHFDLY-RLADPEELE 96 (158)
T ss_dssp -EEEET----TEEEEEEECT-TCSCTTHHH
T ss_pred -eccCC----Ccceeccccc-cCCcHHHHH
Confidence 11111 2566765555 44 566653
No 103
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.42 E-value=6.2e-14 Score=125.28 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=34.9
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCC--CCCCCceEEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK--FASERAQVTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~--~~p~~G~I~~~g~~ 144 (346)
-|++|++++|+||||||||||+++|+|++.... .....+.+++++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 589999999999999999999999999766110 00033466666543
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.41 E-value=2.5e-15 Score=133.52 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=26.5
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|++++|+||||||||||+++|+|++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999999998
No 105
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.41 E-value=1.1e-13 Score=147.78 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=33.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||||++++|++++|+||||||||||+|+|+++.-
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 677999999999999999999999999999987643
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.39 E-value=1e-14 Score=128.85 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.. .....++.+++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~------~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTE------EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECC------EEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecc------hhHhhhceEEEEEEec
Confidence 78999999999999999999999996 568 999987764 2222345667777765
No 107
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.39 E-value=2.6e-13 Score=144.98 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC----
Q 019066 205 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 269 (346)
Q Consensus 205 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~---- 269 (346)
..+++ +.|..+||... .+++++.+|||||+|||+||++| ||||++||+
T Consensus 498 i~~Rl-~~L~~vGL~~l----------------~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~ 560 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYL----------------SLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNR 560 (993)
T ss_dssp HHHHH-HHHHHHTGGGS----------------CTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHH
T ss_pred HHHHH-HHHhhCCCCcc----------------ccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHH
Confidence 44454 45888998751 15889999999999999999998 999999984
Q ss_pred ------------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCC
Q 019066 270 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 270 ------------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 311 (346)
|.|||+|+| ......||+|++ | ++|+++..|+++++...+.
T Consensus 561 ~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~-Lgp~aG~~gG~iv~~G~~~e~~~~~~ 620 (993)
T 2ygr_A 561 RLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVD-IGPGAGEHGGRIVHSGPYDELLRNKD 620 (993)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEE-ECSSSGGGCCSCCEEECHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEE-ecCccccCCCEEEEeeCHHHhhhhhH
Confidence 899999999 334457999965 8 7999999999999987654
No 108
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.38 E-value=2.1e-14 Score=137.34 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=41.2
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.|.|+.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTF 168 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeeccc
Confidence 347899999999999999999999999999 99999999999875
No 109
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.38 E-value=7.4e-15 Score=146.78 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=45.7
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++||++++|++++|+|+||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTF 332 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCccc
Confidence 45999999999999999999999999999999999 99999999887764
No 110
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.38 E-value=1.7e-13 Score=132.31 Aligned_cols=122 Identities=11% Similarity=-0.007 Sum_probs=77.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC-ceeCCCcccccccccCCCCccceeecccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRS 170 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~-g~~i~~~~~~~~~~~~r~~i~~~~~d~~~ 170 (346)
++++++. .+|++++|+||||||||||+|+|+|+... ++.|+|.++ |.... .-.+..+++++++...
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~--------tt~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQH--------TTTAARLYHFPHGGDV 272 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC---------------------CCCEEEECTTSCEE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCcc--------ceEEEEEEEECCCCEe
Confidence 5557775 48999999999999999999999998741 578999887 65432 0112233444444322
Q ss_pred cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 171 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 171 ~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
+ +.+ ++.++.. ...+..+..+.+.++++.+++.. +.++++.+|| ||
T Consensus 273 ~-----dtp-----gv~e~~l------~~l~~~e~~~~~~e~l~~~gl~~-----------------f~~~~~~~lS-G~ 318 (358)
T 2rcn_A 273 I-----DSP-----GVREFGL------WHLEPEQITQGFVEFHDYLGHCK-----------------YRDCKHDADP-GC 318 (358)
T ss_dssp E-----ECH-----HHHTCCC------CCCCHHHHHHTSGGGGGGTTCSS-----------------STTCCSSSCT-TC
T ss_pred c-----Ccc-----cHHHhhh------cCCCHHHHHHHHHHHHHHcCCch-----------------hcCCCcccCC-HH
Confidence 1 111 2323211 11234455677788899999987 5688999999 99
Q ss_pred HHHHHHHHhc
Q 019066 251 QYNQIVATTF 260 (346)
Q Consensus 251 rQRv~IArAL 260 (346)
+||++||+++
T Consensus 319 ~~r~ala~gl 328 (358)
T 2rcn_A 319 AIREAVENGA 328 (358)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9999999998
No 111
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=1.3e-14 Score=137.11 Aligned_cols=131 Identities=14% Similarity=0.032 Sum_probs=79.6
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE---CceeCCCcccccccccCCCCccceeeccccc--
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL-- 171 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~-- 171 (346)
|++.+|++++|+||||||||||+|+|. +++ |++|+|.+ +|+++.... +... ...+++++|.+...
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~--~~~~--~~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGV--RLIP--FGKGSFVGDTPGFSKV 229 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCE--EEEE--ETTTEEEESSCCCSSC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeE--EEEE--cCCCcEEEECcCcCcC
Confidence 356789999999999999999999999 998 99999999 888765211 1111 12457787765321
Q ss_pred ---ccc-hhhchH-hhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCC
Q 019066 172 ---SDD-ASDNIN-MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 246 (346)
Q Consensus 172 ---~~~-v~qn~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~L 246 (346)
..+ + +++. .++.. . ... ..........+...++.++++.++|.+. ..++++..|
T Consensus 230 ~l~~~lt~-e~l~~~f~~~-~-~~~--c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~l 288 (302)
T 2yv5_A 230 EATMFVKP-REVRNYFREF-L-RYQ--CKYPDCTHTNEPGCAVKEAVKNGEISCE----------------RYKSYLKII 288 (302)
T ss_dssp CGGGTSCG-GGGGGGCGGG-H-HHH--HHSTTCCSSSCTTCHHHHHHHTTSSCHH----------------HHHHHHHHT
T ss_pred cccccCCH-HHHHHHHHHH-H-Hcc--CCCCCCCCCCCCCCHHHHHHHcCCCCHH----------------HHHHHHHHH
Confidence 222 3 3331 11100 0 000 0000001122334678899999999853 358889999
Q ss_pred CHHHHHHHHHHH
Q 019066 247 DVEKQYNQIVAT 258 (346)
Q Consensus 247 SgGqrQRv~IAr 258 (346)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 999899999987
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.36 E-value=1.3e-12 Score=116.48 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=41.9
Q ss_pred ceeeeE-EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl-~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
|+++.+ .+++|++++|+||||||||||++.|++... +..|.|.+.+.+
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~~ 60 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTTE 60 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEESS
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEcc
Confidence 555887 899999999999999999999999999988 778888876544
No 113
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.36 E-value=8.4e-15 Score=150.98 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=73.7
Q ss_pred cEEEeeeEEEeCCCCceecccCce-------eeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEEC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMT-------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYN 141 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~-------~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~ 141 (346)
.++++||++.|+.... ..++.++ +.+|+++. ++|+||||||||||+++|+|++. | ++|.|+++
T Consensus 10 ~i~~~~l~~~~~~~~r-~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEKVR-PCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGIVTRC 80 (608)
T ss_dssp ----------CHHHHH-HHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------CCCS
T ss_pred hhhhhhhhHHHHHHHH-HHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCeEEEc
Confidence 5899999999964321 1211100 12466654 99999999999999999999998 8 79999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
|.++...... .....++.++|++|+...+... ++.+|+.+........ ..++...
T Consensus 81 g~~i~~~~~~-~~~~~~~~i~~v~Q~~~l~~~~----------tv~e~i~~~~~~~~~~--------------~~~~s~~ 135 (608)
T 3szr_A 81 PLVLKLKKLV-NEDKWRGKVSYQDYEIEISDAS----------EVEKEINKAQNAIAGE--------------GMGISHE 135 (608)
T ss_dssp CEEEEEEECS-SSSCCEEEESCC---CCCCCHH----------HHHTTHHHHHHHHHCS--------------SSCCCSC
T ss_pred CEEEEEecCC-ccccceeEEeeecccccCCCHH----------HHHHHHHHHHHHhcCC--------------ccccchH
Confidence 9986311000 0111133455666554433222 4444443321110000 0011110
Q ss_pred cc----cccc-eeeeeechhhhcccCCCCCCHH-HHHHHHHHHhc-CccccCCCCCceEEEEec
Q 019066 222 VI----RKVN-FVIFVVDGLAVLKSMEGDSDVE-KQYNQIVATTF-NCPYLSFRDDKPVVVVTH 278 (346)
Q Consensus 222 ~~----~~~~-~~~~~v~e~~~~~~~~~~LSgG-qrQRv~IArAL-DEPts~Ld~g~tviiiTH 278 (346)
.. ..|+ --.+++||+|+.......|+.+ ++|...+++.+ .+|. +.+++++||
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-----~iil~vvt~ 194 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-----TISLVVVPS 194 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-----CCEEEEEES
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-----CCceEEEec
Confidence 00 0000 1147888888766656666654 55666777764 3332 345666666
No 114
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.35 E-value=2.1e-12 Score=109.66 Aligned_cols=87 Identities=11% Similarity=-0.078 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHc-CCCcccccccc---eeeeeechhhhcccCCCCCCHHHHHHHHHH------Hhc---------Ccccc
Q 019066 205 LRNRMRCKAHKI-GCEPSVIRKVN---FVIFVVDGLAVLKSMEGDSDVEKQYNQIVA------TTF---------NCPYL 265 (346)
Q Consensus 205 ~~~~~~~~l~~~-~l~~~~~~~~~---~~~~~v~e~~~~~~~~~~LSgGqrQRv~IA------rAL---------DEPts 265 (346)
..+.+.+.+..+ +-.-....+.+ +|++.+-.. ..++++.+||||||||++|| ||| ||||+
T Consensus 14 i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~ 92 (148)
T 1f2t_B 14 IGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWE-GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTP 92 (148)
T ss_dssp HHHHHHHHHHHHTTTSCCEEEEEETTSSEEEEEEET-TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSC
T ss_pred HHHHHHHHHHHhhCCcchhHHhhhhcCceEEEeccc-cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCc
Confidence 344555666666 32222222333 788877444 34788999999999999886 777 99999
Q ss_pred CCCC----------------CceEEEEec-hhhhccccEEEEEec
Q 019066 266 SFRD----------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 266 ~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+||. |.|+|+||| ..+..+||++++ |+
T Consensus 93 ~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~-l~ 136 (148)
T 1f2t_B 93 YLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR-IS 136 (148)
T ss_dssp TTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE-EE
T ss_pred cCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEE-EE
Confidence 9984 789999999 556788999964 73
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=3.9e-14 Score=139.63 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+|+++||++.|++.. + ++++||+| +|+|+||||||||+|+|+|+..
T Consensus 9 ~~~l~~~~l~~~y~~~~---v---l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKS---V---KRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ------CCCCCCTTTTT---C---C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred cCcEEEEecceeECCEE---E---ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 34699999999997643 4 66699998 9999999999999999999987
No 116
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.34 E-value=4.2e-14 Score=133.54 Aligned_cols=122 Identities=12% Similarity=-0.040 Sum_probs=77.4
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE---CceeCCCcccccccccCCCCccceeecccc-cc
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-LS 172 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~-~~ 172 (346)
|++.+|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|+++.... +. ...+.+++++|.+.. ..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~--~~--~~~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTA--QL--LKFDFGGYVVDTPGFANL 234 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSC--CE--EECTTSCEEESSCSSTTC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeee--EE--EEcCCCCEEEECcCCCcc
Confidence 5677899999999999999999999999999 99999999 898875211 11 112356888888743 23
Q ss_pred cchhhc----hHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCC
Q 019066 173 DDASDN----INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 247 (346)
Q Consensus 173 ~~v~qn----~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LS 247 (346)
++++++ ..+++. ++ +|+.++...+ ..+...++.++|+.++|+.. .+++++++||
T Consensus 235 ~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 293 (301)
T 1u0l_A 235 EINDIEPEELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAES----------------RYENYVKMFY 293 (301)
T ss_dssp CCCSSCHHHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHH----------------HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 444443 345554 56 8887753221 12334678899999999632 4678888888
Q ss_pred H
Q 019066 248 V 248 (346)
Q Consensus 248 g 248 (346)
+
T Consensus 294 e 294 (301)
T 1u0l_A 294 E 294 (301)
T ss_dssp H
T ss_pred H
Confidence 5
No 117
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.33 E-value=5.3e-13 Score=140.46 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.8
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|+||+ |++++|+||||||||||+|+|+|+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 6779999 99999999999999999999999863
No 118
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.31 E-value=5.3e-14 Score=133.83 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=84.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc--------cCCCCCCCCceEEECceeCCCcccccccccCCCCccceee-ccccccc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY-DTRSLSD 173 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~--------~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~-d~~~~~~ 173 (346)
++++|+|+||||||||+|.|.|+. . ++.|+|.+||.++.... .+-..+...++..... +.+...+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~l~~~~-~~~~el~~gCicc~~~~~~~~~l~ 78 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQLIGDRA-TQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEEECTTS-CEEEEETTSCEEECTTSCHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHHHhCCC-CCEEEECCCceEEcccHHHHHHHH
Confidence 689999999999999999999987 5 89999999998875210 0001111111111110 1111111
Q ss_pred ch---hhchHhh-HHHHHhhhhcchhhccCCChHHHHHHH---HHHHHHcCCCcccccccceeeeeechhhhcccCCCCC
Q 019066 174 DA---SDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRM---RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 246 (346)
Q Consensus 174 ~v---~qn~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~L 246 (346)
.+ +|+..+. ..++.+++.++. ........ .+.-+.. ..+++.++||...+.++.. +|
T Consensus 79 ~l~~~~q~~~~~~~~~v~E~~~l~~-------p~~~~~~~~~~~~~~~~~--------~l~~~l~~vd~~~~~~~~~-~l 142 (318)
T 1nij_A 79 DLLDNLDKGNIQFDRLVIECTGMAD-------PGPIIQTFFSHEVLCQRY--------LLDGVIALVDAVHADEQMN-QF 142 (318)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTCC-------HHHHHHHHHHSHHHHHHE--------EEEEEEEEEETTTHHHHHH-HC
T ss_pred HHHhHHhcCCCCCCEEEEeCCCCCC-------HHHHHHHHhcCccccCeE--------EECCEEEEEEHHHHHHHHh-hc
Confidence 11 1221110 012222222110 01100000 0111111 2245678888776655544 89
Q ss_pred CHHHHHHHHHHHhc-------CccccC-------CCCCceEEEEec
Q 019066 247 DVEKQYNQIVATTF-------NCPYLS-------FRDDKPVVVVTH 278 (346)
Q Consensus 247 SgGqrQRv~IArAL-------DEPts~-------Ld~g~tviiiTH 278 (346)
|+||+||+..++++ ||| .. +.++.||+++||
T Consensus 143 s~g~~Q~~~ad~ill~k~dl~de~-~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 143 TIAQSQVGYADRILLTKTDVAGEA-EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp HHHHHHHHTCSEEEEECTTTCSCT-HHHHHHHHHHCSSSCEEECCS
T ss_pred hHHHHHHHhCCEEEEECcccCCHH-HHHHHHHHHhCCCCeEEEecc
Confidence 99999999998888 787 22 335899999999
No 119
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.30 E-value=5.4e-15 Score=145.79 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=48.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++++++.|+... + |+++ + ..+|++++|+||||||||||+++|+|++. |++|+|.+.+.++.
T Consensus 144 ~~l~~Lg~~~~~~~---~---L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 144 LDLHSLGMTAHNHD---N---FRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIE 206 (418)
T ss_dssp CCGGGSCCCHHHHH---H---HHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCC
T ss_pred CCHHHcCCCHHHHH---H---HHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccch
Confidence 45555555553211 2 4446 4 37999999999999999999999999999 89999999987764
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.28 E-value=8.3e-14 Score=135.40 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=44.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-CceEEECceeCCCcccccccccCCCCccceee
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 166 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~ 166 (346)
+++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.++. + ..+..+++++|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~e-------~-~~~~~~~~v~Q 188 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE-------Y-VFKHKKSIVNQ 188 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSCC-------S-CCCCSSSEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccHh-------h-hhccCceEEEe
Confidence 78999999999999999999999999999 87 899988775543 1 12334567776
No 121
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.26 E-value=1.8e-12 Score=124.94 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=41.1
Q ss_pred ceee-eEEecCCcEEEEEcCCCCCHHHHHHHHhhhc--cCCCCCCCC----ce-EEECcee
Q 019066 92 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASER----AQ-VTYNSSV 144 (346)
Q Consensus 92 L~~i-sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~--~~~~~~p~~----G~-I~~~g~~ 144 (346)
|+.+ ++.|++|++++|+||||||||||++.|++.. + |++ |. |++++.+
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~-----~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-----PEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTSCSCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-----hhcCCCCCeEEEEeCCC
Confidence 4445 7899999999999999999999999999998 5 666 67 8888755
No 122
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.24 E-value=2.9e-12 Score=135.56 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 7779999 9999999999999999999999999864
No 123
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.22 E-value=2.4e-13 Score=130.48 Aligned_cols=91 Identities=10% Similarity=0.039 Sum_probs=69.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++++++.|+... + |+++||++.+|++++|+||||||||||+|+|+|++. |++|+|.+.|.++....
T Consensus 29 ~ie~~~~~~~~~~~~---~---l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~~~~ 97 (337)
T 2qm8_A 29 LAESRRADHRAAVRD---L---IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPSSTR 97 (337)
T ss_dssp HHTCSSHHHHHHHHH---H---HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGGGGS
T ss_pred HHeeCCcccccChHH---H---HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCcccc
Confidence 588999999996422 4 667999999999999999999999999999999999 99999999998874211
Q ss_pred cccccccCCCCccceeeccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
......-.++.+++++|+...+
T Consensus 98 ~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 98 TGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp SCCCSSCCGGGSTTGGGCTTEE
T ss_pred cccchHHHhhhheeeccCcccc
Confidence 0000111234567777766554
No 124
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.22 E-value=4.3e-12 Score=122.62 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=43.9
Q ss_pred eeeEEEeCCCCceecccCceeeeE-------EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-CceEEECc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNS 142 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl-------~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-~G~I~~~g 142 (346)
..++++|-.... .. |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+
T Consensus 92 ~~~~iR~~~~~~-~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~e 159 (356)
T 3jvv_A 92 AGAVFRTIPSKV-LT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIE 159 (356)
T ss_dssp EEEEEEEECCSC-CC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEE
T ss_pred cEEEEEECCCCC-CC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEcc
Confidence 355666633221 13 444665 778999999999999999999999999998 77 56665443
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.22 E-value=1.7e-13 Score=119.37 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=36.0
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+++|++++|+||||||||||+++|++.+ +.|.|.++|.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-------GVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-------SSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-------CCCeEEEcccch
Confidence 47899999999999999999999999963 479999998765
No 126
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.20 E-value=3.4e-11 Score=111.80 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=27.7
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|++++|+||||||||||++.|++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999999999765
No 127
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.20 E-value=9.1e-12 Score=124.52 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=46.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 7779999999 9999999999999999999999999 99999999998875
No 128
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.17 E-value=2.8e-11 Score=105.38 Aligned_cols=66 Identities=9% Similarity=-0.057 Sum_probs=57.8
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEE
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVV 276 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviii 276 (346)
+..|++..+...+...+.+..||||||||++|||+| ||||++||+ +.++|+|
T Consensus 44 ~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivi 123 (173)
T 3kta_B 44 FSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVI 123 (173)
T ss_dssp GGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred cccCceEEecCCCccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEE
Confidence 446888999888888888999999999999999998 999999984 6789999
Q ss_pred ec-hhhhccccEEEE
Q 019066 277 TH-GDLLSLTDRARI 290 (346)
Q Consensus 277 TH-~~~~~~aDri~v 290 (346)
|| ..+...||+++.
T Consensus 124 th~~~~~~~ad~i~~ 138 (173)
T 3kta_B 124 TLRDVMMANADKIIG 138 (173)
T ss_dssp CSCHHHHTTCSEEEE
T ss_pred EecHHHHHhCCEEEE
Confidence 99 667788999964
No 129
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.16 E-value=1.9e-12 Score=125.25 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=53.6
Q ss_pred EEeeeEEE---eCCCCceecc------cCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 72 DAKNKILS---YTPGAWIENV------GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 72 ~~~~l~~~---y~~~~~~~~l------~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
+|++++|+ |++... .++ +-++++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|
T Consensus 137 ~f~~v~f~~~~Y~~~~~-~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~ 210 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQ-ELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIED 210 (361)
T ss_dssp TTSCCCCSCSCCCHHHH-HHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEES
T ss_pred CcCccccccccccchhH-HHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECC
Confidence 78888888 753111 121 00266999999999999999999999999999999999 9999999987
Q ss_pred e
Q 019066 143 S 143 (346)
Q Consensus 143 ~ 143 (346)
.
T Consensus 211 ~ 211 (361)
T 2gza_A 211 V 211 (361)
T ss_dssp S
T ss_pred c
Confidence 4
No 130
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=1.2e-12 Score=128.88 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=39.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcE--EEEEcCCCCCHHHHHHHHhhhc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~--iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.|++++ ++.|++. . |+++||+|++|++ ++|+||||||||||+|+|+|+.
T Consensus 16 ~l~~~~-~~~y~~~--~-----L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-----DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC----C-----HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCe--e-----cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 477888 8889652 1 5569999999999 9999999999999999999985
No 131
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.08 E-value=1.9e-10 Score=101.76 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=34.8
Q ss_pred ceeeeE-EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 92 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 92 L~~isl-~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
|+.+.. .+++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 444654 689999999999999999999999999 4 4445555543
No 132
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.08 E-value=1.2e-13 Score=132.09 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=52.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCC-------cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~G-------e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
+++.++++..|+... + ++++++.|.+| +.++|+||||||||||+++|++.+... +.+++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~~---~---~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN---V---KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCHH---H---HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSH
T ss_pred HcCCccHHHccCcHH---H---HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCH
Confidence 467778888786533 3 66699999877 899999999999999999999998210 006778777666
Q ss_pred eeC
Q 019066 143 SVG 145 (346)
Q Consensus 143 ~~i 145 (346)
.++
T Consensus 91 ~~l 93 (334)
T 1in4_A 91 GDM 93 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 133
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.07 E-value=8.4e-13 Score=115.17 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
|++++|+||||||||||+++|++ +.+|.++++|.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccch
Confidence 68999999999999999999986 3568999998765
No 134
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=6.8e-12 Score=118.79 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=54.0
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE---CceeCCCcccccccccCCCCccceeecccccc-
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS- 172 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~- 172 (346)
+++.+|++++|+||||||||||+|+|.|+.+ +..|+|.+ +|+.+... .+.... ..+++++.+....
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt~~--~~~~~~---~~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTTRH--VELIHT---SGGLVADTPGFSSL 237 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CCC--CCEEEE---TTEEEESSCSCSSC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccccH--HHHhhc---CCEEEecCCCcccc
Confidence 7788999999999999999999999999999 99999998 78776421 111111 1467777654322
Q ss_pred ---cc-hhhchH-hhHHH--HHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 173 ---DD-ASDNIN-MIKLW--IMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 173 ---~~-v~qn~~-~~~~~--v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
.+ + +++. .++.. ......|. ......+....+.++++.++|.+
T Consensus 238 ~l~~lt~-e~l~~~f~~~~~~~~~C~f~----~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 238 EFTDIEE-EELGYTFPDIREKSSSCKFR----GCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp CCTTCCH-HHHGGGSHHHHHHGGGCSST----TCCSSSCSSCHHHHHHHHTSSCH
T ss_pred ccccCCH-HHHHHHHHHHHHHhhhcccc----CCCCccCHHHHHHHHHHhCCChH
Confidence 22 3 4442 22211 10111111 00111223456888999999986
No 135
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.01 E-value=9.3e-12 Score=116.97 Aligned_cols=126 Identities=15% Similarity=0.028 Sum_probs=69.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhch
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 179 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~ 179 (346)
.++.+++|+|++|||||||++.|.+++. +. | .... .+.++.+|...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~-----~~-g------~~~~-------------~~~iv~~D~f~~~~------ 77 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM-----EK-Y------GGEK-------------SIGYASIDDFYLTH------ 77 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HH-H------GGGS-------------CEEEEEGGGGBCCH------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh-----hc-C------CCCc-------------eEEEeccccccCCh------
Confidence 4678999999999999999999999998 53 2 0000 11233455433322
Q ss_pred HhhHHHHHhhhhcch-----hhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHH
Q 019066 180 NMIKLWIMEGVRHGE-----LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 254 (346)
Q Consensus 180 ~~~~~~v~~~i~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv 254 (346)
+..+|+.++. ......+.....+.+.+.++.+ ++|++|..++......+...+||||+||+
T Consensus 78 -----~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l---------~~g~~t~~~~~v~~p~y~~~~sgGq~~R~ 143 (290)
T 1odf_A 78 -----EDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI---------FNNNEHPDQDTVVLPKYDKSQFKGEGDRC 143 (290)
T ss_dssp -----HHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHH---------TC------CCEEEECCEETTHHHHTCEEC
T ss_pred -----HHHHHHhccccccchhhhccCcchhHHHHHHHHHHHh---------hccCccccCcceeeccCccccCCcccccc
Confidence 2223332221 1011111111223344444443 34444443332234556779999999999
Q ss_pred HHHH--hc-------CccccCCCCC
Q 019066 255 IVAT--TF-------NCPYLSFRDD 270 (346)
Q Consensus 255 ~IAr--AL-------DEPts~Ld~g 270 (346)
++|+ ++ ||+++++|+.
T Consensus 144 ~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 144 PTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSCEEEESSCSEEEEEESSTTCCCC
T ss_pred ccccceEcCCCEEEEeCccccCCcc
Confidence 9973 33 9999998863
No 136
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.98 E-value=1.2e-12 Score=122.02 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=41.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++++|++++| ++|+||||||||||+++|+|.+. + |.|.++|.++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELL 81 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTC
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHH
Confidence 66699999999 99999999999999999999987 5 78999987764
No 137
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.96 E-value=2.3e-10 Score=102.76 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=35.9
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhh--hccCCCCCCCCceEEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~g--l~~~~~~~p~~G~I~~~g~~ 144 (346)
-|++|++++|+||||||||||++.|++ +.++.......|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 45400000156788888765
No 138
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.95 E-value=6.7e-10 Score=97.42 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=32.4
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|+++.+|++++|+||||||||||+++|+|++ | .+.+.+.++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~------~---~~~~~~~~~~ 42 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL------A---EIKISISHTT 42 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS------S---SEEECCCEEC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC------C---CeEEeceecc
Confidence 5788999999999999999999999999996 4 3666665543
No 139
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.94 E-value=2.9e-11 Score=114.29 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=56.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEe-------------------cCCcEEEEEcCCCCCHHHHHHHHhhhccC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEN 128 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i-------------------~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~ 128 (346)
..+|+++||++.|. . + +++++|.+ .+|+++||+||||||||||+++|+|++..
T Consensus 35 ~~~i~~~~v~~~y~---~--~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL---P--L---SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp CTTCCHHHHHHTHH---H--H---HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccccchHhHHHHHH---H--H---HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44699999999993 2 3 66699988 99999999999999999999999998751
Q ss_pred CCCCCCCceEEE---CceeC
Q 019066 129 DKFASERAQVTY---NSSVG 145 (346)
Q Consensus 129 ~~~~p~~G~I~~---~g~~i 145 (346)
. |++|+|.+ ||...
T Consensus 107 ~---~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 107 W---PEHRRVELITTDGFLH 123 (308)
T ss_dssp S---TTCCCEEEEEGGGGBC
T ss_pred C---CCCCeEEEEecCCccC
Confidence 1 57899999 77653
No 140
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.93 E-value=4.9e-11 Score=108.22 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=41.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++. |++|+|.++|.++.
T Consensus 9 ~l~l~~~~~~~~~-------------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEETTEEEE-------------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC--------
T ss_pred EEEEEeeecccCC-------------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEcc
Confidence 4788887665521 445556 8999999999999999999999999 99999999998873
No 141
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.93 E-value=3.6e-10 Score=101.85 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=35.5
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC--CCceEEECceeC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVG 145 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p--~~G~I~~~g~~i 145 (346)
-.-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+.+.
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQP 56 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSCC
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCCC
Confidence 344679999999999999999999999999997 6 578888776543
No 142
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.92 E-value=5.5e-10 Score=109.90 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=32.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-++++|+++.|+.++|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999999999999999984
No 143
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.91 E-value=2.6e-10 Score=102.64 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh-hhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~-gl~~ 127 (346)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 56699999999999999999999999999999 9985
No 144
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.89 E-value=2.1e-11 Score=111.10 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh---hhccCCCCCCCCceEEECcee
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~---gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++++|+||||||||||+++|+ |+.. ++.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh
Confidence 47899999999999999999999 9988 899999887754
No 145
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.83 E-value=3e-10 Score=104.41 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=35.0
Q ss_pred CCcEEEeee-EEEeCCCCceecccCceeeeEEecC---CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 68 GSLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 68 ~~~l~~~~l-~~~y~~~~~~~~l~~L~~isl~i~~---Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+++|| +|+|++... + |+++||+|.+ |++++|+|++||||||+.++|++.+.
T Consensus 15 ~~~l~~~~~~~~~~~~~~~--~---l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQ--I---LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -----------------CH--H---HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEcceeeEEecCcch--h---hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 347999999 999933333 4 6779999999 99999999999999999999999765
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.83 E-value=2.3e-09 Score=101.33 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=42.0
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++|+.++|++++|+|||||||||+++.|++.+. +..|+|.+.+.|..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECTT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEccccc
Confidence 567778999999999999999999999999999 88889998877653
No 147
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.82 E-value=6e-09 Score=102.00 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=33.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHH--hhhccCCCCCCCC-----ceEEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFENDKFASER-----AQVTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L--~gl~~~~~~~p~~-----G~I~~~g~~ 144 (346)
-|++|++++|+||||||||||++.| .++.+ ++. +.+++++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-----~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-----LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-----cccCCCCCcEEEEeCCC
Confidence 5899999999999999999999944 56665 433 378888765
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.73 E-value=3.8e-09 Score=93.63 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=36.7
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC---CCceEEECceeC
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 145 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p---~~G~I~~~g~~i 145 (346)
.++|++++|+||||||||||+++|+|+++ | +.|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCceEEEecCCCcC
Confidence 57899999999999999999999999998 5 467888777654
No 149
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.72 E-value=1.7e-09 Score=108.79 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=40.9
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhh--hccCCCCCCCCceEEECceeCC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g--l~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++++.++..++|.|++||||||++|+|.. ++. .+.|++.+.+.|.+
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK 208 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCS
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCc
Confidence 889999999999999999999999999876 555 66788888877765
No 150
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.68 E-value=3.5e-09 Score=106.82 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=44.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
+++++|.+++|+.++|+||||||||||+++|+|+++ |++|.|.+.|.+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 455999999999999999999999999999999999 999999998865
No 151
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.65 E-value=2.7e-09 Score=93.96 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=44.5
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE--EECceeCC
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSVGD 146 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I--~~~g~~i~ 146 (346)
+|++..++.-. + .+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~~~---~---~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECSVE---K---VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCC---H---HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHHT
T ss_pred CCCcccccccC---H---HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchhh
Confidence 45666554432 3 455888889999999999999999999999999986 45877 88887764
No 152
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.64 E-value=3e-08 Score=85.39 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=35.3
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 138 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I 138 (346)
++++|++.+| +++|+||||||||||+++|.+++. +..|..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~ 57 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG-----GLSAKA 57 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT-----CCCTGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc-----CCcccc
Confidence 5599999999 999999999999999999999987 655543
No 153
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.62 E-value=6.4e-08 Score=93.53 Aligned_cols=83 Identities=11% Similarity=0.044 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHH------HHHhc----------CccccCCCC---
Q 019066 209 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI------VATTF----------NCPYLSFRD--- 269 (346)
Q Consensus 209 ~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~------IArAL----------DEPts~Ld~--- 269 (346)
+.+.++.+++.......-+.+++.+...+ .+.++..|||||+||++ +|++| ||||++||.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPN-GVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETT-EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCC-CccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34556666554421122234666665543 23567789999999984 45654 999999984
Q ss_pred ------------CceEEEEec-hhhhccccEEEEEec
Q 019066 270 ------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 270 ------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+.+||+||| ..+..+||++++ |+
T Consensus 324 ~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~-l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN-VK 359 (371)
T ss_dssp HHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE-EE
T ss_pred HHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE-EE
Confidence 468999999 457788999965 65
No 154
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.62 E-value=1.2e-08 Score=89.96 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999985
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.60 E-value=9.3e-08 Score=89.75 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=51.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||++..|++++. +..|+|.+.+.|+.
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCCcc
Confidence 5677888888542 2348888 999999999999999999999999999 88899999887754
No 156
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=9.3e-08 Score=90.77 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-hccCCCCCCCCceEEECceeCC
Q 019066 104 SLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g-l~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.+.|+||+|+|||||+++|++ ++. ++.|.+.++|.+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQFV 76 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceeec
Confidence 489999999999999999999 788 89999999987653
No 157
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.50 E-value=5.3e-08 Score=85.17 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.3
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4789999999999999999999999999997
No 158
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.41 E-value=3.8e-08 Score=90.04 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=38.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHh---hhccCCCCCCCCceEE--------ECceeCC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSSVGD 146 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~---gl~~~~~~~p~~G~I~--------~~g~~i~ 146 (346)
++|++++|+|||||||||++++|+ |++. +++|.++ .+|.++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCcc
Confidence 789999999999999999999999 9988 9999998 8887763
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=1.2e-07 Score=83.15 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=25.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||||++.+|++++|+|++||||||+.+.|++.+.
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 666999999999999999999999999999998774
No 160
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.40 E-value=9.8e-08 Score=82.95 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999997
No 161
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.39 E-value=1.2e-07 Score=82.11 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|++++|+||||||||||+++|.+.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999986
No 162
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.39 E-value=1.5e-07 Score=82.55 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=32.9
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++.++|++++|+||||||||||+++|++.+ |.+.++|.++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~ 64 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAFH 64 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGS
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEcccccc
Confidence 4667899999999999999999999999976 66888886653
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.39 E-value=7.5e-07 Score=88.31 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=39.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~~ 144 (346)
|+++..-+++|+++.|.|++|+|||||+..|++... +..| .|.+.+.+
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFSLE 241 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEESS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEECC
Confidence 566887899999999999999999999999999876 5445 56665433
No 164
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.34 E-value=1.5e-07 Score=89.40 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=45.5
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++|++++|++++|+|+|||||||++..|++.+. +..|+|.+.+.|+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCCCc
Confidence 56999999999999999999999999999999999 88899999888864
No 165
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.34 E-value=1.7e-07 Score=82.43 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=38.2
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
..++|++++|+|+||||||||+++|.+++. +..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccCc
Confidence 457899999999999999999999999998 8889988876654
No 166
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.29 E-value=3.1e-07 Score=77.40 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc--eEEECceeC
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 145 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G--~I~~~g~~i 145 (346)
+|+.++|+||||||||||+++|++.+. + +| .+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-----E-AGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-----T-TTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-----h-cCCcEEEEcHHHh
Confidence 899999999999999999999999998 6 47 677766554
No 167
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.27 E-value=1.7e-07 Score=80.64 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.5
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 136 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G 136 (346)
+|++++|+.++|+||||||||||+++|++.+. +.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 56778899999999999999999999999997 6665
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.22 E-value=1.1e-07 Score=91.58 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=34.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE-EECce
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 143 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I-~~~g~ 143 (346)
+++|+++.|.||+|||||||+..++.... +..|.+ ++++.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDAE 98 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESS
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEecc
Confidence 78999999999999999999999999987 666766 55543
No 169
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.20 E-value=8.7e-07 Score=76.87 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCC------CCceEEECceeC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 145 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p------~~G~I~~~g~~i 145 (346)
.++|+|+||||||||++.++|........| +.|.|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999875211112 468899998765
No 170
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.19 E-value=2.9e-07 Score=83.59 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=47.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+++++.+.|.... + ++++++++++| ++|+||||||||||+++|++... .|.|.+++.++
T Consensus 26 ~~l~~l~~~~~~~~---~---~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~ 85 (254)
T 1ixz_A 26 EELKEIVEFLKNPS---R---FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHHHCHH---H---HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHHHHHHHHHCHH---H---HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHH
Confidence 34556666664322 3 66699999999 99999999999999999999875 58888888665
No 171
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.19 E-value=4e-07 Score=81.86 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=35.6
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
-+.+.++|++++|+|+||||||||+++|+++ .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 3445689999999999999999999999986 37788888764
No 172
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.18 E-value=4e-07 Score=92.54 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=38.5
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEE-ECceeC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSSVG 145 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~-~~g~~i 145 (346)
.+++|++++|+|+||||||||+++|++.+. |++| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcHH
Confidence 578999999999999999999999999999 8886 684 888665
No 173
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.17 E-value=4.5e-06 Score=80.51 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCC------CCCCCceEEECceeC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDK------FASERAQVTYNSSVG 145 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~------~~p~~G~I~~~g~~i 145 (346)
+++|+|++|||||||+|.|.|...... ..++.|.|.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 399999999999999999998754100 003567888877553
No 174
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.17 E-value=3.6e-07 Score=84.35 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=47.3
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
+++++.+.|.... + +++++|++++| ++|+||||||||||+++|++... .|.|.+++.++
T Consensus 51 ~l~~l~~~~~~~~---~---l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~ 109 (278)
T 1iy2_A 51 ELKEIVEFLKNPS---R---FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 109 (278)
T ss_dssp HHHHHHHHHHCHH---H---HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHHHHHHHHCHH---H---HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHH
Confidence 4556666664422 3 66699999999 99999999999999999999875 58899888765
No 175
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.16 E-value=5e-07 Score=87.67 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=33.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|+++++.+++|++++|+||||||||||+++|++.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 566999999999999999999999999999998654
No 176
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.15 E-value=4.1e-07 Score=88.21 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=48.0
Q ss_pred CcEEEeeeEEEeCCCCceecccCce--------------eeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~--------------~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.-+.|+||++.|+..... |+ |+.+.|.+|+.++|+||+|||||||++.|++...
T Consensus 132 ~ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 132 NKILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TSCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 458999999999876543 66 7999999999999999999999999999999874
No 177
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.15 E-value=4.1e-07 Score=86.41 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=44.3
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCc------EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge------~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
+.+++.|++.. + |++++..+.+++ ++||+||||||||||+++|.+++... |+.|.|.+-+
T Consensus 64 rll~~~~~~~~---~---l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~ 129 (321)
T 3tqc_A 64 RLLSFYVTARQ---T---LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHHH---H---HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEE
T ss_pred HHHHHhhcchH---H---HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEe
Confidence 34555565433 3 666888888887 99999999999999999999998721 3566655433
No 178
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.14 E-value=1.1e-06 Score=77.68 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999987
No 179
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.11 E-value=1.5e-06 Score=74.17 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 578999999999999999999999875 5567777554
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.10 E-value=1.9e-06 Score=74.94 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCC------CCceEEECceeC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 145 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p------~~G~I~~~g~~i 145 (346)
.++|+|+||||||||++.|+|........| ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999753111113 357888988765
No 181
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.09 E-value=1.6e-06 Score=84.53 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=36.4
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhh------------hccCCCCCCCCceEEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISK------------VFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~g------------l~~~~~~~p~~G~I~~~g~~ 144 (346)
.+++|..++|+|+||||||||+|+|.| ... |+.|.|.+.|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~-----p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID-----PEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC-----TTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec-----ceeeeeeeCCcc
Confidence 457899999999999999999999999 334 889999998743
No 182
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.07 E-value=1.9e-06 Score=76.22 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.1
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999999875
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.01 E-value=1.3e-06 Score=83.42 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=53.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
+++.+++.+.|+... + ++++++.+.+|.+++|+|++|+|||||++.|++.+. +..++|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~~~~---~---~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALSTQ---L---LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHHHH---H---HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred HhhcCCchhhhHHHH---H---HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeecC
Confidence 466777777665322 3 566999999999999999999999999999999998 7788888776665
No 184
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.96 E-value=1e-06 Score=78.21 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
+.+++|+||+||||||++++|++.+.-.. ++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~--~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCcceee
Confidence 56899999999999999999998872100 77888876
No 185
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.96 E-value=3.5e-06 Score=79.01 Aligned_cols=41 Identities=15% Similarity=0.404 Sum_probs=35.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECceeC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVG 145 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~~i 145 (346)
.+|++++|+|||||||||+++.|++.+. +++| +|.+-+.|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEecCc
Confidence 5799999999999999999999999998 7778 777765553
No 186
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.95 E-value=4e-06 Score=71.10 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999886
No 187
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.93 E-value=4.9e-06 Score=71.27 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=33.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc--eEEECceeC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 145 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G--~I~~~g~~i 145 (346)
.+|++++|+|++||||||++++|.+.+. + .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECChHH
Confidence 4789999999999999999999999987 5 56 666776554
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.92 E-value=4.7e-06 Score=79.86 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=36.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++.+++|+|++|||||||+|.|.|.+. ++.|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeecCC
Confidence 4578999999999999999999999998 88899888776653
No 189
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.88 E-value=8.5e-06 Score=73.37 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.9
Q ss_pred ceeeeEEec---CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 92 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 92 L~~isl~i~---~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
|.++||.+. +|.+++|.|++||||||+++.|...+. + .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCcee
Confidence 666888887 999999999999999999999999998 6 556644
No 190
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.88 E-value=5.5e-06 Score=72.65 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=29.0
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+-=++++|++++|+|++|||||||++.|.+.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 334678899999999999999999999999873
No 191
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.86 E-value=8.2e-06 Score=68.58 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++.++++.+| +.+|+||||||||||+.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 34466677666 99999999999999999998544
No 192
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.82 E-value=3.6e-06 Score=87.39 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=35.1
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
|++++++..++|+|++|+|||||++.|++..... +..|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCccc
Confidence 5678899999999999999999999999877511 367887 566554
No 193
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.82 E-value=3.4e-06 Score=86.58 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=43.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC-ceEEECceeC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVG 145 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~-G~I~~~g~~i 145 (346)
++++++.+.+|+.++|+||||||||||+++|++++. +.. |.+.+++...
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPE 99 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTT
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCcc
Confidence 566999999999999999999999999999999998 666 7888877554
No 194
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.80 E-value=7.6e-06 Score=72.23 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=38.6
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc--eEEECceeC
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 145 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G--~I~~~g~~i 145 (346)
+.+++|.+++|+|++||||||+.+.|.+.+. |..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChHH
Confidence 5568899999999999999999999999998 7888 888886554
No 195
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.77 E-value=1.2e-05 Score=79.04 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=48.7
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.+++++.|+.. -++++|+ ++++++|+|++||||||++..|++.+. +..++|.+.+.|+.
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECCSS
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecccc
Confidence 45677777542 1238887 899999999999999999999999999 88899999887764
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.77 E-value=5.8e-06 Score=83.88 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=40.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 143 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~ 143 (346)
++++++++ +|+.++|+||||||||||+++|++.+. +..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 45588888 899999999999999999999999998 77788877663
No 197
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.75 E-value=3.7e-06 Score=80.59 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=38.7
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh--hccCCCCCCCCceEEECc
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNS 142 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g--l~~~~~~~p~~G~I~~~g 142 (346)
++++...|+......+ |++++++++ .++|+|++|||||||++.|.| +++ +.+|.+.-..
T Consensus 11 l~~~~~~~~~~~~~~~---l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT~~p 71 (360)
T 3t34_A 11 IQRACTALGDHGDSSA---LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVTRRP 71 (360)
T ss_dssp TTTTTTSCSSCCSSCC---C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCCCSC
T ss_pred HHHHHHhhCccccccc---cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCcccCcc
Confidence 3455555653221124 666999998 999999999999999999999 666 5556554333
No 198
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.71 E-value=3.8e-05 Score=67.75 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+.+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 34466777776 99999999999999999997544
No 199
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.71 E-value=9.9e-06 Score=75.99 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=48.8
Q ss_pred EeeeEEEeCCCCceecccCcee-eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 73 AKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~-isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.+++.+.|++. .++ ++|+++ |++++++|++|+||||++..|++.+. +..++|.+.+.|..
T Consensus 77 ~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 77 YDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred HHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecCCC
Confidence 45666667542 334 778876 99999999999999999999999998 88889998887764
No 200
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.71 E-value=8e-06 Score=71.09 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=36.9
Q ss_pred EEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh----ccCCCCCCCCceEEECcee
Q 019066 77 ILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV----FENDKFASERAQVTYNSSV 144 (346)
Q Consensus 77 ~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl----~~~~~~~p~~G~I~~~g~~ 144 (346)
++.|++-.. + ++++||..++. .++|+|++|||||||++.+.+- +.+.. .++.+.+.++|..
T Consensus 6 ~~~~~~~~~--~---l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~-~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGFSS--V---LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL-HPTSEELTIAGMT 70 (198)
T ss_dssp -------CH--H---HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCC-CCSCEEEEETTEE
T ss_pred HHHHHHHHH--H---HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCC-CceeEEEEECCEE
Confidence 345655433 4 66699998887 5899999999999999999862 21011 1345666666543
No 201
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.66 E-value=3.2e-05 Score=66.70 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.8
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++++++.++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 56699998887 789999999999999999987
No 202
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.65 E-value=3.4e-05 Score=68.69 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=32.8
Q ss_pred ceee-eEEecCCcEEEEEcCCCCCHHHHHHHH-hhhccCCCCCCCCceEEECc
Q 019066 92 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 92 L~~i-sl~i~~Ge~iaIvGpnGsGKSTLl~~L-~gl~~~~~~~p~~G~I~~~g 142 (346)
|+.+ .--+++|++++|+||||||||||+..+ ....+ ...+.++++.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~ 59 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVAL 59 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEES
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEc
Confidence 4445 557899999999999999999995544 55555 4444455544
No 203
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.63 E-value=3.8e-05 Score=65.19 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999864
No 204
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.62 E-value=2.8e-05 Score=66.86 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=34.3
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE-EECce
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 143 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I-~~~g~ 143 (346)
+...+|.++.|+|++||||||+.+.|+..+. +..+.+ .+++.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~d 50 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDGD 50 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeHH
Confidence 4456899999999999999999999999988 666665 45443
No 205
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.59 E-value=3e-05 Score=66.85 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=26.8
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+||+..+|..++|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999876
No 206
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.54 E-value=2.8e-05 Score=78.07 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=39.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++++.+++| +.|+||+|||||||+++|++... .+.+.+++.++.
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~ 101 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFV 101 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGT
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHH
Confidence 56699999999 99999999999999999999875 477888887653
No 207
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.54 E-value=4e-05 Score=67.16 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.3
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...+|.+++|+||||||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346889999999999999999999998774
No 208
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.51 E-value=4.5e-05 Score=66.62 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++|+|++||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 209
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.48 E-value=0.00013 Score=70.28 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=28.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 55688888886 999999999999999999974
No 210
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.48 E-value=9.1e-06 Score=78.22 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=34.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.++|++..|+... + +++++|.| +|+|++|+|||||++.|.+...
T Consensus 17 ~v~~~~l~~~~~~k~---~---~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKS---V---KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHH---H---HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCee---e---cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 588999998886533 3 55588877 9999999999999999987654
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.45 E-value=8.5e-05 Score=73.10 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccC----CC---CCCCCceEEECceeC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFEN----DK---FASERAQVTYNSSVG 145 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~----~~---~~p~~G~I~~~g~~i 145 (346)
.++|+|+||||||||+|.|.|.... .+ ..+..|.+.++|+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 7999999999999999999997530 00 014568899998764
No 212
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.43 E-value=8.4e-05 Score=63.15 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.|.+-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 213
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.41 E-value=7.1e-05 Score=65.12 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 214
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.40 E-value=0.00012 Score=61.29 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 215
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.40 E-value=0.00025 Score=67.65 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=31.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|+.+.--+++|+.+.|.|++|+|||||+..++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 555665789999999999999999999998887665
No 216
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.37 E-value=0.00011 Score=63.43 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.+++|+|+||||||||++.|.+.+.... ..-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCCc
Confidence 5899999999999999999999876111 123666666543
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.34 E-value=9.7e-05 Score=71.93 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=33.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccC------CCCCCCCceEEECce
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFEN------DKFASERAQVTYNSS 143 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~------~~~~p~~G~I~~~g~ 143 (346)
.+..|..++|||++|+|||||+|+|.|.... ....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999987210 001167788887664
No 218
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.34 E-value=7.8e-06 Score=77.46 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=36.8
Q ss_pred ceeeeEEecCCcE--EEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 92 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 92 L~~isl~i~~Ge~--iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
++.++..|+.|++ +.|.||+|+||||+++++++.+. +..+.+.+
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~-----~~~~~~~~ 79 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY-----GKNYSNMV 79 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH-----TTSHHHHE
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc-----CCCccceE
Confidence 5558899999998 99999999999999999999886 55554333
No 219
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.31 E-value=7.2e-05 Score=69.99 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++.+++|+|++|||||||+|.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999864
No 220
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.25 E-value=0.00013 Score=63.46 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+++|+|++||||||+.+.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.25 E-value=0.00016 Score=65.35 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=30.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
++++++.+++| +.|+||+|+|||||+++|++.+. .. -+.+++.++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~-----~~--~~~i~~~~~ 81 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK-----VP--FFTISGSDF 81 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT-----CC--EEEECSCSS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC-----CC--EEEEeHHHH
Confidence 34456666666 88999999999999999999875 22 355655443
No 222
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.25 E-value=5.3e-05 Score=72.72 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=32.4
Q ss_pred ceeeeEEecCCcE--EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~--iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4558899999999 99999999999999999998764
No 223
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.24 E-value=0.00032 Score=73.95 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=25.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..|+.+.|+||+||||||++.++.....
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999999876654
No 224
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.21 E-value=0.00016 Score=61.77 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998654
No 225
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.20 E-value=0.00047 Score=58.97 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc----eEEECcee
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA----QVTYNSSV 144 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G----~I~~~g~~ 144 (346)
.++|+|++|||||||++.+.+-.-.....|+.+ .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 589999999999999976655321111226655 44555543
No 226
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.19 E-value=0.00016 Score=61.68 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|||||||++.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999653
No 227
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.14 E-value=0.00022 Score=59.72 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+.+.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987764
No 228
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.13 E-value=0.00024 Score=63.55 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=24.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34688999999999999999999999754
No 229
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.12 E-value=0.00022 Score=64.78 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=33.7
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
...++.++.|+|++||||||+.+.|...+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHHH
Confidence 456788999999999999999999998775 25677777554
No 230
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.06 E-value=0.00035 Score=59.11 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998775
No 231
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.03 E-value=0.00014 Score=63.52 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.00 E-value=0.00032 Score=69.05 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++.+++++|++||||||++..|+..+. +..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecCcc
Confidence 578999999999999999999999998 88888988766653
No 233
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.00 E-value=0.00034 Score=63.20 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999554
No 234
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.99 E-value=0.00042 Score=61.94 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|+|||||+|.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999765
No 235
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.97 E-value=0.00042 Score=66.27 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=30.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
-+++|+++.|.||+|||||||+..++.... ...|.+.|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~-----~~g~~vly 94 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGIAAF 94 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEE
Confidence 478999999999999999999888876654 34455544
No 236
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.96 E-value=0.00043 Score=58.95 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|.+++|.|++||||||+.+.|...+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988664
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.95 E-value=0.00041 Score=57.83 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 019066 104 SLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L 122 (346)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 238
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.93 E-value=0.00045 Score=59.48 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 239
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.91 E-value=0.00048 Score=58.90 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++.++.|+|++||||||+.+.|..-+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999987553
No 240
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.91 E-value=0.00046 Score=64.85 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=29.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
|+.+.--+++|+++.|.|++|+|||||+..++.-.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55566669999999999999999999988887544
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.91 E-value=0.00033 Score=74.20 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=29.2
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.+++|+.++|+||+|||||||+++|++.+.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 34789999999999999999999999999875
No 242
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.86 E-value=0.001 Score=57.44 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997654
No 243
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.86 E-value=0.00062 Score=59.85 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.+-+++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 244
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.85 E-value=0.0012 Score=54.56 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 245
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.85 E-value=0.00038 Score=59.22 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+.++.|+|++||||||+.+.|+..+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999986553
No 246
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.84 E-value=0.00061 Score=58.04 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..+.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987654
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.84 E-value=0.00057 Score=59.59 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|+||||||||||++.|..-++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999876553
No 248
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.83 E-value=0.00052 Score=58.21 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988764
No 249
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.83 E-value=0.00071 Score=65.23 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
.+..++|+|++|||||||++.|...+. ...+.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEe
Confidence 567899999999999999999999887 6777777753
No 250
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.82 E-value=0.0018 Score=53.26 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
No 251
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.82 E-value=0.00087 Score=64.48 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc------CCCCCCCCceEEECc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNS 142 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~------~~~~~p~~G~I~~~g 142 (346)
|-.++|||.+|+|||||+|.|.+-.. .....|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 001126778888766
No 252
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.82 E-value=0.0016 Score=56.67 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
No 253
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.81 E-value=0.0019 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998765
No 254
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.81 E-value=0.00061 Score=61.96 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+||+|||||||.+.|+.-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999988654
No 255
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.81 E-value=0.00075 Score=58.29 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+|-+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 256
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.80 E-value=0.00071 Score=58.29 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999874
No 257
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.79 E-value=0.00066 Score=63.12 Aligned_cols=42 Identities=19% Similarity=0.435 Sum_probs=32.8
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++.+.++..+.|.||+|||||||+++|++... .+-+.+++.+
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-------~~~i~v~~~~ 84 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIKGPE 84 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-------CEEEEECHHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-------CCEEEEEhHH
Confidence 34567888999999999999999999998764 3455665543
No 258
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.78 E-value=0.002 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 259
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.77 E-value=0.002 Score=55.56 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 260
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.76 E-value=0.00085 Score=57.02 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 261
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.75 E-value=0.00067 Score=62.01 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|||||||+|.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998754
No 262
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.74 E-value=0.00086 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3799999999999999999999876
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.74 E-value=0.00078 Score=56.75 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 264
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.73 E-value=0.00083 Score=57.52 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999999987654
No 265
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.73 E-value=0.0009 Score=57.91 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.+++|.|+.||||||+.+.|..-+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998876
No 266
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.69 E-value=0.00093 Score=58.03 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|.+++|.|+.||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
No 267
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.0025 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998744
No 268
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.66 E-value=0.00092 Score=57.79 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988664
No 269
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.00099 Score=56.71 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
No 270
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.65 E-value=0.0012 Score=60.82 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 139 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~ 139 (346)
..+.|+||+|+||||++++|++.+. ...+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~~ 79 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAMI 79 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcceE
Confidence 5899999999999999999999987 6656443
No 271
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.64 E-value=0.001 Score=57.76 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.3
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+|-+++|.|+.||||||+.+.|...+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999997664
No 272
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.64 E-value=0.0032 Score=52.77 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 273
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.62 E-value=0.0022 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 274
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.62 E-value=0.001 Score=56.61 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
No 275
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.60 E-value=0.0012 Score=56.32 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.+++|+|++||||||+.+.|+.-+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999986553
No 276
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.60 E-value=0.0011 Score=54.51 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 277
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.60 E-value=0.0021 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|||||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 278
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.59 E-value=0.0022 Score=60.38 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=28.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++..+++ .|.-++|+|+||+|||||...|.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 44588888 788999999999999999999887
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.57 E-value=0.0011 Score=61.57 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=28.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
..+..+.|.||+||||||+.+.|..-++ .+.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 4567899999999999999999987553 24566654
No 280
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.57 E-value=0.0013 Score=53.91 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 281
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.56 E-value=0.0012 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
No 282
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.56 E-value=0.0013 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999987643
No 283
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.55 E-value=0.0025 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998643
No 284
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.54 E-value=0.003 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 285
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0014 Score=54.16 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 286
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 287
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.53 E-value=0.0011 Score=54.72 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999987543
No 288
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.53 E-value=0.0013 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 289
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.52 E-value=0.0039 Score=53.74 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
=.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 290
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.51 E-value=0.0013 Score=59.42 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|.+|+|||||+|.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999998553
No 291
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.50 E-value=0.0038 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 292
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.50 E-value=0.0015 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988754
No 293
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.50 E-value=0.0011 Score=56.15 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.++.|.|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987654
No 294
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.50 E-value=0.0011 Score=56.89 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=25.6
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++.+.+++|+|+.||||||+.+.|...+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677999999999999999999987664
No 295
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.49 E-value=0.0014 Score=54.06 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 296
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.49 E-value=0.0013 Score=60.54 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||+|.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 297
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.48 E-value=0.0015 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999998644
No 298
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.48 E-value=0.0042 Score=52.55 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 299
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.46 E-value=0.0016 Score=54.30 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 300
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.46 E-value=0.0018 Score=53.99 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+.-.++|+|++|||||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999874
No 301
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.46 E-value=0.0014 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
--.++|+|+.|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
No 302
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.46 E-value=0.0014 Score=55.51 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998764
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.45 E-value=0.0017 Score=57.10 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|-+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999988664
No 304
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.44 E-value=0.0014 Score=54.65 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 305
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.44 E-value=0.0011 Score=59.15 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=23.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.+..|+.++|+||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 356789999999999999998887654
No 306
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.43 E-value=0.00077 Score=67.16 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=29.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 45578888888 88999999999999999998664
No 307
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.42 E-value=0.0036 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.-.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 308
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.41 E-value=0.0017 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998864
No 309
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.41 E-value=0.0034 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998644
No 310
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.40 E-value=0.0018 Score=53.28 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.40 E-value=0.0017 Score=57.44 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++.+++|+|+.||||||+.+.|+.-+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999986553
No 312
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.38 E-value=0.0018 Score=56.64 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999976553
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.38 E-value=0.0019 Score=54.18 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987654
No 314
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.37 E-value=0.0028 Score=54.77 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998876
No 315
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.37 E-value=0.0019 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 316
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.36 E-value=0.002 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999763
No 317
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.36 E-value=0.0017 Score=54.87 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47999999999999999998753
No 318
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.35 E-value=0.0017 Score=54.44 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+|++||||||+.+.|...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987654
No 319
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.35 E-value=0.0032 Score=59.79 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=26.0
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998875
No 320
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.34 E-value=0.0019 Score=54.96 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 321
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.34 E-value=0.0022 Score=55.50 Aligned_cols=28 Identities=25% Similarity=0.555 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+-+++|+|+.||||||+.+.|...+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999987664
No 322
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.34 E-value=0.0021 Score=52.86 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999764
No 323
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.33 E-value=0.0024 Score=56.00 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998776
No 324
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.33 E-value=0.0053 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 325
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.33 E-value=0.0016 Score=59.59 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||+|.|.+-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
No 326
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.33 E-value=0.002 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 327
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.33 E-value=0.0018 Score=56.99 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987664
No 328
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.32 E-value=0.0022 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998643
No 329
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.32 E-value=0.004 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998643
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.31 E-value=0.0021 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.|++||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
No 331
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.30 E-value=0.0024 Score=55.18 Aligned_cols=28 Identities=18% Similarity=0.523 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
....+++|.|+.||||||+.+.|+.-+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3446899999999999999999986553
No 332
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.29 E-value=0.0044 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 333
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.29 E-value=0.0014 Score=55.14 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+.-.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
No 334
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.29 E-value=0.0023 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 335
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.28 E-value=0.0023 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|+.|+|||||++.+.+-+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999998765
No 336
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.28 E-value=0.0019 Score=54.94 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987654
No 337
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0023 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998744
No 338
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.28 E-value=0.002 Score=58.66 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||+|.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 339
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.28 E-value=0.0038 Score=58.70 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.2
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-+++|+++.|.||+|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 47899999999999999999999888754
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.28 E-value=0.0022 Score=56.15 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999976553
No 341
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.28 E-value=0.0023 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 342
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.27 E-value=0.0021 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+++|+|+.||||||+.+.|...+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987653
No 343
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.26 E-value=0.0042 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 344
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.25 E-value=0.0025 Score=53.30 Aligned_cols=23 Identities=52% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 345
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.0023 Score=60.25 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999886
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.24 E-value=0.0024 Score=57.66 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+++|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987554
No 347
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.23 E-value=0.0023 Score=59.80 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++|+|++|+|||||+|.|.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
No 348
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.23 E-value=0.0048 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 349
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.22 E-value=0.0044 Score=53.27 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
=.++|+|+.|+|||||++.+.+-..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC
Confidence 4689999999999999999987543
No 350
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.22 E-value=0.0023 Score=57.71 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|++|||||||++.|.+-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 351
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.21 E-value=0.0025 Score=53.66 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 352
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.21 E-value=0.0047 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 353
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.20 E-value=0.0025 Score=55.57 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-+++|+|+.||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998764
No 354
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.0026 Score=55.34 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.|.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 355
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0047 Score=52.46 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999874
No 356
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0061 Score=53.41 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 357
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.17 E-value=0.0028 Score=53.83 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 358
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.17 E-value=0.0025 Score=59.51 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++| +++|+|+.|+|||||+|.|.|-.
T Consensus 9 ~~g-~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVG-YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCC
Confidence 344 89999999999999999999853
No 359
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.16 E-value=0.0022 Score=61.15 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
..-.++|+|++|+|||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998864
No 360
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.16 E-value=0.0028 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 361
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0027 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 362
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.14 E-value=0.0028 Score=53.49 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++.-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999998754
No 363
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.13 E-value=0.0016 Score=60.54 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++-+++|.|++||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999988654
No 364
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.12 E-value=0.0057 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 365
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.11 E-value=0.0032 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|||||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 366
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.11 E-value=0.0021 Score=63.76 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.2
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.+-+|+.++|+|++|+|||||++.|..-..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 6677999999999999999999999988765
No 367
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.11 E-value=0.0028 Score=58.15 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|.+|||||||+|.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 368
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.10 E-value=0.0049 Score=58.27 Aligned_cols=27 Identities=19% Similarity=0.472 Sum_probs=24.5
Q ss_pred CCc--EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTT--SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge--~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+. .+.|.||+|+|||||++.+.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 445 899999999999999999999887
No 369
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.10 E-value=0.003 Score=57.49 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 370
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.10 E-value=0.0034 Score=56.51 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++-+++|+||+||||||+.+.|+.-+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556899999999999999999986553
No 371
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.09 E-value=0.0034 Score=57.06 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 466899999999999999999998754
No 372
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.09 E-value=0.0032 Score=54.09 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 373
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.08 E-value=0.0033 Score=57.69 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++..+.|.||+|+|||||+++|++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998764
No 374
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.08 E-value=0.0027 Score=61.13 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|||++|||||||+|.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999874
No 375
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0032 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 376
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.05 E-value=0.0015 Score=56.96 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|++|||||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
No 377
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.04 E-value=0.0081 Score=51.87 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0033 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.++|+|+.|||||||++.|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999987654
No 379
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.04 E-value=0.0026 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998765
No 380
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.03 E-value=0.0032 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 381
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.03 E-value=0.004 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 382
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.02 E-value=0.0063 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 383
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0035 Score=53.06 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.-.++|+|+.|||||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.01 E-value=0.0033 Score=58.01 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.-+++|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 385
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.00 E-value=0.0033 Score=58.23 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||+|.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 386
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.00 E-value=0.0032 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 387
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.00 E-value=0.0038 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 388
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.00 E-value=0.0042 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3446789999999999999999988775
No 389
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0039 Score=53.33 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 390
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.99 E-value=0.0032 Score=53.79 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 391
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.99 E-value=0.0074 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999988764
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.98 E-value=0.0037 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987553
No 393
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.98 E-value=0.0038 Score=53.55 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
--.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998643
No 394
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.97 E-value=0.0032 Score=53.12 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 395
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.96 E-value=0.0038 Score=54.87 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|-++.|+|+.||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987664
No 396
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.96 E-value=0.0035 Score=58.44 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||+|+|||||++.|+..+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 45799999999999999999999875
No 397
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.0039 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 398
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.95 E-value=0.0037 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 399
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.92 E-value=0.0039 Score=56.60 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.|.+-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 400
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.91 E-value=0.0039 Score=56.81 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++++|++|+|||||+|.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 401
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.90 E-value=0.0033 Score=52.57 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.88 E-value=0.0041 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|+.||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999999999999999987553
No 403
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.88 E-value=0.0042 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+-+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988653
No 404
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.87 E-value=0.0046 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998643
No 405
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.86 E-value=0.0044 Score=56.71 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.++|+|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999998664
No 406
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.86 E-value=0.0045 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 407
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.82 E-value=0.0045 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.81 E-value=0.0048 Score=58.75 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999988664
No 409
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.80 E-value=0.0052 Score=55.92 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=24.7
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.++..+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34556799999999999999999988765
No 410
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.78 E-value=0.0031 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=9.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
No 411
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.78 E-value=0.0044 Score=56.77 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|..|+|||||+|.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.77 E-value=0.0057 Score=58.15 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.++.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 556899999999999999999987664
No 413
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0052 Score=52.24 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 414
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.74 E-value=0.0051 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999888544
No 415
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.74 E-value=0.0046 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999864
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.73 E-value=0.0062 Score=54.10 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..+.|+|+.||||||+.+.|+.-+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987664
No 417
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.71 E-value=0.0054 Score=56.41 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 418
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.70 E-value=0.0028 Score=62.30 Aligned_cols=43 Identities=16% Similarity=0.374 Sum_probs=32.6
Q ss_pred EEecCC--cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 97 YDVPKT--TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 97 l~i~~G--e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
|.+.++ .+++|+|++|+||||++..|++.+. ....+|.+-..|
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~-----~~G~kVllv~~D 136 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ-----KRGLKPALIAAD 136 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH-----HHHCCEEEECCS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecc
Confidence 444434 5999999999999999999999887 444456654444
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.69 E-value=0.0056 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.++|+|+.|||||||++.+..-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999987643
No 420
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.69 E-value=0.0061 Score=54.01 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+|-+++|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999998876
No 421
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.65 E-value=0.006 Score=55.02 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998876
No 422
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.63 E-value=0.0025 Score=67.48 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=30.3
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++.+.++..++|+||+|||||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 367788999999999999999999999999886
No 423
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.62 E-value=0.0029 Score=54.95 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|||||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
No 424
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.62 E-value=0.0054 Score=51.29 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
....+.|.||+|+|||||++.+...+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
No 425
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.61 E-value=0.0048 Score=60.80 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||+|.|.|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998854
No 426
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.60 E-value=0.0091 Score=52.65 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=26.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
++..-+++ .|..++|+||+|||||||...|+.-
T Consensus 25 lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 25 MHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34466665 5778999999999999999988753
No 427
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.0064 Score=53.56 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 428
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.59 E-value=0.0074 Score=53.94 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...-+.|.||+|+|||||++.|+..+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 334588999999999999999998664
No 429
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.59 E-value=0.0067 Score=52.31 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999764
No 430
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.58 E-value=0.0053 Score=55.04 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|-++.|.|+.||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999988775
No 431
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.55 E-value=0.0045 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+.-.++|+|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344699999999999999999854
No 432
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.55 E-value=0.011 Score=52.62 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|.++.|-|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999999887
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.54 E-value=0.007 Score=57.18 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988664
No 434
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.54 E-value=0.0068 Score=59.09 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=24.7
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+.=.+..++.|+|++||||||+.+.|..-+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334567899999999999999999987543
No 435
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.53 E-value=0.007 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
=.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999988753
No 436
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.52 E-value=0.0077 Score=56.75 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35789999999999999999986553
No 437
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.50 E-value=0.0021 Score=58.04 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=25.3
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+..+.| +.|.||+|+|||||+++|+....
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 44555566 78999999999999999998664
No 438
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.48 E-value=0.014 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 439
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.47 E-value=0.0078 Score=53.35 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.++.|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998886
No 440
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.47 E-value=0.0032 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998875
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.46 E-value=0.0086 Score=53.40 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.+++|.|+.||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998774
No 442
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.46 E-value=0.0079 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|.||+|+|||||++.+...+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999988775
No 443
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.42 E-value=0.0078 Score=53.60 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=26.3
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+-.+++..++.|+||.||||+|..+.|+.-|.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 34456777899999999999999999987664
No 444
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.40 E-value=0.01 Score=56.86 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.9
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.++.|.|++|||||||...++.-..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988876554
No 445
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.39 E-value=0.0089 Score=55.82 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=25.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-+++|+++.|.||+|||||||+..++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999888753
No 446
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.39 E-value=0.009 Score=53.42 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|-+++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999998776
No 447
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.35 E-value=0.0066 Score=54.97 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++-+++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5778999999999999999999987764
No 448
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.32 E-value=0.012 Score=57.93 Aligned_cols=39 Identities=33% Similarity=0.521 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++.+++++|++||||||++..|+..+. ...-+|.+-..|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~-----~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ-----KRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCC
Confidence 467999999999999999999999887 444455543333
No 449
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.22 E-value=0.011 Score=54.65 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+-.++|+|.+|+|||||+|.|.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34799999999999999999998653
No 450
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.22 E-value=0.018 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|||.+|+|||||++.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 589999999999999998753
No 451
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.16 E-value=0.012 Score=48.40 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456789999999999999999988654
No 452
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.16 E-value=0.014 Score=55.58 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998875
No 453
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.15 E-value=0.013 Score=51.61 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.4
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
+++|+++.|.|++|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999999976543
No 454
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.10 E-value=0.011 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999987654
No 455
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.07 E-value=0.013 Score=53.84 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++..+.|.||+|+|||||++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455799999999999999999998775
No 456
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.06 E-value=0.01 Score=58.27 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||+|+|||||+++|++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998774
No 457
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.03 E-value=0.013 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.|+||.||||+|..+.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997765
No 458
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.011 Score=55.24 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=25.8
Q ss_pred eeEEecCC--cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~G--e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44444444 3499999999999999999998764
No 459
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.98 E-value=0.018 Score=49.57 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCCHHHHH-HHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLV-NRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl-~~L~gl~~ 127 (346)
+|.++.|.||.||||||++ +++..+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999997 55555443
No 460
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.96 E-value=0.012 Score=56.37 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++..++++|.+|+|||||+|.|.+-.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhc
Confidence 56689999999999999999999874
No 461
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.96 E-value=0.0094 Score=51.94 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHH-Hhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNR-ISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~-L~gl~ 126 (346)
.++|+|+.|||||||++. +.+-+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999998 55554
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.89 E-value=0.014 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|.||.|+|||||++.+...+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999988664
No 463
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.86 E-value=0.011 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||+|.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
No 464
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.82 E-value=0.014 Score=54.31 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998765
No 465
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.81 E-value=0.024 Score=53.39 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466899999999999999999999886
No 466
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.80 E-value=0.0034 Score=53.92 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|||||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 467
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.78 E-value=0.013 Score=56.24 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++..++++|.+|+|||||+|.|.+-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999875
No 468
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.77 E-value=0.013 Score=54.98 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+..+.|.||+|+|||||++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999998775
No 469
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.75 E-value=0.011 Score=58.55 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+.|-.++|+|++|+|||||+|.|.+-.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345569999999999999999999864
No 470
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.76 E-value=0.0053 Score=52.81 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~g 124 (346)
-.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4689999999999999988875
No 471
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.74 E-value=0.016 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987664
No 472
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.74 E-value=0.017 Score=54.92 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.3
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+.++++---.++|+|.++||||||++.|.+-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 5555555556999999999999999998864
No 473
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.72 E-value=0.011 Score=56.16 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 474
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.70 E-value=0.017 Score=54.84 Aligned_cols=27 Identities=37% Similarity=0.819 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++..+.|.||+|+||||+.++|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345689999999999999999998764
No 475
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.69 E-value=0.015 Score=56.35 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|.+++|||||+|.|.+-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998854
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.69 E-value=0.026 Score=48.62 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.6
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.-+++ .|.-+.|.|+||+|||||.-.|..
T Consensus 10 s~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 55554 677899999999999999887754
No 477
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.58 E-value=0.019 Score=50.79 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.8
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++...+.|.||.|+||||+..+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 66666799999999999999999999876
No 478
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.57 E-value=0.019 Score=52.45 Aligned_cols=26 Identities=35% Similarity=0.788 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||+|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998875
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.53 E-value=0.021 Score=53.58 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.+..-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 344568999999999999999999876
No 480
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.43 E-value=0.024 Score=49.79 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|.+|+|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998775
No 481
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.42 E-value=0.023 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.+.|.||+|+|||+|.++|+.-+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578889999999999999998774
No 482
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.41 E-value=0.02 Score=51.76 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+...+.|.||+|+|||||++.|+....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344689999999999999999988654
No 483
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.39 E-value=0.015 Score=57.33 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=26.2
Q ss_pred eeEEecCCc--EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKTT--SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~Ge--~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.-.|..|. .+.|.||+|+|||||+++|+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 334444554 489999999999999999998875
No 484
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.36 E-value=0.019 Score=58.15 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|..|+|||||+|.|.|-.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999854
No 485
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.35 E-value=0.027 Score=54.06 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++|.++.|.||.|||||||+..++.-.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 6899999999999999999987776544
No 486
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.27 E-value=0.026 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988653
No 487
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.27 E-value=0.023 Score=57.03 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|-++.|+|.+||||||+.+.|+.-+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999999886
No 488
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.27 E-value=0.019 Score=58.55 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-+++|+|+.|+|||||+|.|.|-.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 578999999999999999999864
No 489
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.21 E-value=0.028 Score=52.48 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..-+.|.||+|+|||+|++.|+....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 344689999999999999999987654
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.19 E-value=0.027 Score=50.58 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.+||+|+.||||||+.+.|+.-+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987654
No 491
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.17 E-value=0.028 Score=53.31 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+...+.|.||+|+|||||++.|+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999987654
No 492
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.15 E-value=0.037 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..+.|.||+|+|||+|++.|.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 345789999999999999999998765
No 493
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.14 E-value=0.026 Score=55.33 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=30.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444554589999999999999999999988887654
No 494
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.11 E-value=0.026 Score=55.16 Aligned_cols=23 Identities=43% Similarity=0.457 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|.+|+|||||+|.|.|-.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 495
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.10 E-value=0.026 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++++|+.|+|||||++.|.+...
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 689999999999999999998543
No 496
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.09 E-value=0.028 Score=57.14 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|-++.|.|.+||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998775
No 497
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.04 E-value=0.027 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|||.+++|||||+|.|.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.03 E-value=0.029 Score=53.42 Aligned_cols=26 Identities=38% Similarity=0.805 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...+.|.||+|+|||||.+.|+..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998774
No 499
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.02 E-value=0.028 Score=58.44 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++=.++|+|+.|+|||||+|.|.|-.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456679999999999999999999853
No 500
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.02 E-value=0.031 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||.|+|||||++.+...+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998764
Done!