Query 019067
Match_columns 346
No_of_seqs 214 out of 728
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:23:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.7 5E-17 1.7E-21 128.0 6.2 61 64-124 3-63 (79)
2 2cu7_A KIAA1915 protein; nucle 99.7 2.3E-16 7.9E-21 120.7 9.2 57 76-132 6-62 (72)
3 2yum_A ZZZ3 protein, zinc fing 99.6 3.9E-16 1.3E-20 119.8 7.5 56 77-132 6-67 (75)
4 2elk_A SPCC24B10.08C protein; 99.5 8.6E-15 2.9E-19 108.3 6.4 48 78-125 8-57 (58)
5 1x41_A Transcriptional adaptor 99.5 1.9E-14 6.5E-19 106.8 6.7 49 77-125 6-55 (60)
6 2iw5_B Protein corest, REST co 99.5 4.3E-14 1.5E-18 131.2 5.8 65 63-127 117-181 (235)
7 1guu_A C-MYB, MYB proto-oncoge 99.4 1.6E-13 5.3E-18 98.4 6.3 48 78-125 2-50 (52)
8 2d9a_A B-MYB, MYB-related prot 99.4 2.7E-13 9.2E-18 99.9 5.7 49 76-124 5-54 (60)
9 1gvd_A MYB proto-oncogene prot 99.4 2.7E-13 9.1E-18 97.4 5.1 47 78-124 2-49 (52)
10 2din_A Cell division cycle 5-l 99.4 9.5E-13 3.3E-17 98.8 8.3 56 76-132 6-61 (66)
11 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.1E-12 3.6E-17 102.4 7.7 48 77-124 16-67 (73)
12 1w0t_A Telomeric repeat bindin 99.3 2.2E-12 7.6E-17 93.2 6.8 46 79-124 2-50 (53)
13 2dim_A Cell division cycle 5-l 99.3 1.5E-12 5.1E-17 98.7 5.9 50 76-125 6-56 (70)
14 1ity_A TRF1; helix-turn-helix, 99.3 2.9E-12 1E-16 97.0 7.4 51 76-126 7-60 (69)
15 2xag_B REST corepressor 1; ami 99.3 1.4E-12 4.9E-17 131.4 5.8 65 63-127 364-428 (482)
16 2ltp_A Nuclear receptor corepr 99.0 2.5E-13 8.7E-18 108.4 0.0 56 75-130 12-67 (89)
17 2eqr_A N-COR1, N-COR, nuclear 99.3 8.2E-12 2.8E-16 93.2 6.9 45 76-120 9-53 (61)
18 3sjm_A Telomeric repeat-bindin 99.3 8.8E-12 3E-16 94.4 7.0 47 78-124 10-59 (64)
19 2cjj_A Radialis; plant develop 99.2 1.7E-11 5.7E-16 99.6 7.1 63 78-141 7-73 (93)
20 2k9n_A MYB24; R2R3 domain, DNA 99.2 5.7E-11 2E-15 96.3 8.1 54 77-130 51-104 (107)
21 1irz_A ARR10-B; helix-turn-hel 99.1 1.1E-10 3.6E-15 89.7 8.0 56 75-130 3-63 (64)
22 2llk_A Cyclin-D-binding MYB-li 99.1 6.1E-11 2.1E-15 92.5 6.6 52 69-121 13-64 (73)
23 3osg_A MYB21; transcription-DN 99.1 4.8E-11 1.6E-15 99.5 6.3 49 76-124 8-56 (126)
24 3osg_A MYB21; transcription-DN 99.1 8.3E-11 2.9E-15 98.0 6.3 51 77-127 60-110 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 99.1 7.3E-11 2.5E-15 94.7 5.2 48 77-124 54-101 (105)
26 3zqc_A MYB3; transcription-DNA 99.1 8.3E-11 2.8E-15 98.4 5.3 53 77-129 52-104 (131)
27 2k9n_A MYB24; R2R3 domain, DNA 99.1 1.2E-10 4.1E-15 94.4 6.0 46 79-124 1-47 (107)
28 1gv2_A C-MYB, MYB proto-oncoge 99.1 9.1E-11 3.1E-15 94.2 5.1 47 78-124 3-50 (105)
29 2yqk_A Arginine-glutamic acid 99.0 2.6E-10 8.8E-15 86.0 6.2 47 78-127 8-55 (63)
30 2cqq_A RSGI RUH-037, DNAJ homo 99.0 7.7E-10 2.6E-14 85.9 7.9 48 78-126 7-58 (72)
31 3zqc_A MYB3; transcription-DNA 99.0 1.3E-10 4.4E-15 97.3 3.6 46 79-124 2-48 (131)
32 1h8a_C AMV V-MYB, MYB transfor 99.0 3.9E-10 1.3E-14 93.7 6.0 48 77-124 25-73 (128)
33 1h8a_C AMV V-MYB, MYB transfor 99.0 2.8E-10 9.4E-15 94.6 3.8 47 77-123 77-123 (128)
34 1wgx_A KIAA1903 protein; MYB D 98.9 1.5E-09 5.2E-14 85.1 6.6 45 79-123 8-56 (73)
35 2ckx_A NGTRF1, telomere bindin 98.9 2E-09 6.9E-14 85.7 6.8 48 80-127 1-53 (83)
36 2roh_A RTBP1, telomere binding 98.9 5.9E-09 2E-13 88.6 10.0 53 75-127 27-84 (122)
37 2crg_A Metastasis associated p 98.9 2.8E-09 9.7E-14 82.0 5.9 48 77-127 6-54 (70)
38 2juh_A Telomere binding protei 98.8 4.7E-09 1.6E-13 89.1 7.4 55 73-127 11-70 (121)
39 2aje_A Telomere repeat-binding 98.8 4E-09 1.4E-13 87.5 6.0 52 75-126 9-65 (105)
40 1h89_C C-MYB, MYB proto-oncoge 98.8 3.3E-09 1.1E-13 90.9 5.6 48 77-124 56-104 (159)
41 1h89_C C-MYB, MYB proto-oncoge 98.8 2E-09 6.9E-14 92.2 3.6 47 77-123 108-154 (159)
42 1x58_A Hypothetical protein 49 98.7 1.3E-08 4.6E-13 77.7 5.5 45 77-121 6-53 (62)
43 4a69_C Nuclear receptor corepr 98.7 1.3E-08 4.5E-13 82.3 5.7 44 77-120 41-84 (94)
44 4eef_G F-HB80.4, designed hema 98.6 2.7E-09 9.2E-14 84.1 -1.6 43 79-121 20-66 (74)
45 1ign_A Protein (RAP1); RAP1,ye 98.5 4.2E-08 1.4E-12 91.9 3.4 50 77-126 6-61 (246)
46 1fex_A TRF2-interacting telome 97.7 4.8E-05 1.6E-09 56.8 5.0 46 79-124 2-57 (59)
47 3hm5_A DNA methyltransferase 1 97.6 0.00017 5.8E-09 58.9 7.4 51 79-129 30-85 (93)
48 1ug2_A 2610100B20RIK gene prod 97.3 0.0022 7.4E-08 52.7 11.0 52 78-129 32-86 (95)
49 2xag_B REST corepressor 1; ami 97.3 4.1E-05 1.4E-09 77.6 0.0 42 79-120 189-230 (482)
50 1ofc_X ISWI protein; nuclear p 97.0 0.00073 2.5E-08 65.0 5.6 48 80-127 111-159 (304)
51 2ebi_A DNA binding protein GT- 96.4 0.0064 2.2E-07 47.2 6.0 51 77-127 2-66 (86)
52 4iej_A DNA methyltransferase 1 96.1 0.018 6E-07 47.1 7.3 51 79-129 30-85 (93)
53 2lr8_A CAsp8-associated protei 95.0 0.0011 3.7E-08 51.9 0.0 44 80-124 15-61 (70)
54 1ofc_X ISWI protein; nuclear p 95.7 0.025 8.5E-07 54.4 7.7 53 78-130 211-279 (304)
55 4b4c_A Chromodomain-helicase-D 95.2 0.033 1.1E-06 48.9 6.3 53 77-129 5-62 (211)
56 2y9y_A Imitation switch protei 93.6 0.072 2.5E-06 52.6 5.3 47 80-126 124-172 (374)
57 4b4c_A Chromodomain-helicase-D 93.1 0.091 3.1E-06 46.1 4.8 49 78-127 133-196 (211)
58 1ign_A Protein (RAP1); RAP1,ye 90.2 0.51 1.7E-05 44.4 6.5 28 100-127 173-200 (246)
59 1ig6_A MRF-2, modulator recogn 89.8 0.4 1.4E-05 38.6 4.8 55 89-143 37-107 (107)
60 2xb0_X Chromo domain-containin 87.7 0.53 1.8E-05 44.5 4.8 39 67-105 152-195 (270)
61 2hzd_A Transcriptional enhance 86.5 1.5 5.2E-05 35.0 6.1 50 77-126 4-74 (82)
62 2y9y_A Imitation switch protei 79.8 5.4 0.00019 39.4 8.3 53 78-130 227-295 (374)
63 2xb0_X Chromo domain-containin 77.9 4.3 0.00015 38.2 6.7 45 78-122 2-51 (270)
64 2cxy_A BAF250B subunit, HBAF25 67.4 6.3 0.00022 32.5 4.6 40 90-129 56-107 (125)
65 2li6_A SWI/SNF chromatin-remod 63.5 7.3 0.00025 31.7 4.2 39 90-128 54-100 (116)
66 2lm1_A Lysine-specific demethy 60.7 19 0.00064 28.6 6.0 40 90-129 49-100 (107)
67 2jrz_A Histone demethylase jar 55.8 16 0.00056 29.7 5.0 41 89-129 44-96 (117)
68 1kkx_A Transcription regulator 55.7 16 0.00056 30.2 5.1 40 90-129 53-100 (123)
69 3e7l_A Transcriptional regulat 52.3 26 0.00087 25.0 5.0 27 84-110 18-44 (63)
70 2eqy_A RBP2 like, jumonji, at 51.5 25 0.00086 28.9 5.5 41 89-129 46-98 (122)
71 2jxj_A Histone demethylase jar 49.6 13 0.00043 29.0 3.3 29 100-128 59-91 (96)
72 1fse_A GERE; helix-turn-helix 42.8 75 0.0026 22.0 6.2 48 78-128 8-55 (74)
73 1c20_A DEAD ringer protein; DN 42.3 43 0.0015 27.5 5.5 40 90-129 57-109 (128)
74 2o8x_A Probable RNA polymerase 41.4 69 0.0024 21.9 5.8 48 80-129 14-61 (70)
75 3c57_A Two component transcrip 39.1 1.1E+02 0.0036 23.2 7.0 48 80-130 26-73 (95)
76 1ntc_A Protein (nitrogen regul 38.1 45 0.0015 25.5 4.7 29 82-110 48-76 (91)
77 2kk0_A AT-rich interactive dom 37.8 36 0.0012 28.7 4.5 30 100-129 87-121 (145)
78 2rq5_A Protein jumonji; develo 37.4 30 0.001 28.8 3.9 30 100-129 65-99 (121)
79 3i4p_A Transcriptional regulat 37.2 32 0.0011 28.5 4.0 43 85-132 3-46 (162)
80 1x3u_A Transcriptional regulat 34.7 68 0.0023 22.7 5.0 45 81-128 16-60 (79)
81 2jt1_A PEFI protein; solution 33.8 81 0.0028 24.0 5.5 46 87-137 6-58 (77)
82 3ulq_B Transcriptional regulat 32.3 99 0.0034 23.5 5.9 47 78-127 26-72 (90)
83 1je8_A Nitrate/nitrite respons 31.9 90 0.0031 23.0 5.4 48 78-128 18-65 (82)
84 1umq_A Photosynthetic apparatu 31.4 56 0.0019 25.3 4.3 29 82-110 38-66 (81)
85 3mzy_A RNA polymerase sigma-H 30.8 1.1E+02 0.0038 23.6 6.1 32 97-129 123-154 (164)
86 3fdq_A Motility gene repressor 29.7 1.5E+02 0.005 26.2 7.0 63 79-144 69-143 (170)
87 2lc3_A E3 ubiquitin-protein li 26.5 60 0.0021 26.2 3.7 57 76-132 10-85 (88)
88 1eto_A FIS, factor for inversi 24.7 1.1E+02 0.0038 24.1 5.0 27 84-110 57-83 (98)
89 3hug_A RNA polymerase sigma fa 24.5 1.8E+02 0.0063 21.4 6.1 32 97-129 52-83 (92)
90 2e1c_A Putative HTH-type trans 24.5 95 0.0032 26.1 4.9 44 84-132 26-70 (171)
91 2dbb_A Putative HTH-type trans 23.3 1.4E+02 0.0049 23.8 5.6 43 85-132 9-52 (151)
92 1ku3_A Sigma factor SIGA; heli 23.1 2E+02 0.0069 20.2 6.0 47 81-128 10-59 (73)
93 2kz2_A Calmodulin, CAM; TR2C, 22.6 1.3E+02 0.0044 22.1 4.8 33 291-326 46-78 (94)
94 1p4w_A RCSB; solution structur 22.4 2.1E+02 0.0072 22.2 6.2 47 79-128 32-78 (99)
95 2cyy_A Putative HTH-type trans 21.1 1.7E+02 0.0058 23.5 5.6 43 85-132 7-50 (151)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=128.02 Aligned_cols=61 Identities=28% Similarity=0.397 Sum_probs=56.7
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 64 DPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 64 ~~~kKirkPy~i~k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
.+.+|.++++.....+..||+|||++||++|++||++|.+||++|++||..|||.||++|+
T Consensus 3 sg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 3 SGSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred CcccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 3567889999988999999999999999999999999999999999999999999997763
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=2.3e-16 Score=120.74 Aligned_cols=57 Identities=39% Similarity=0.673 Sum_probs=52.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019067 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (346)
Q Consensus 76 ~k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~g~ 132 (346)
..+++.||+|||++|++++++||.+|..||++|++||..|||+||++||.+..+.|.
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~ 62 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL 62 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 447889999999999999999999999999999999999999999999999877653
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=119.76 Aligned_cols=56 Identities=36% Similarity=0.668 Sum_probs=52.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC------chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019067 77 KSRESWTEQEHDKFLEALQLFD------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyG------rdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~g~ 132 (346)
..++.||+|||++|+++|++|| .+|.+||++|++||..|||.||++||.++.+.|.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999999999 7999999999999999999999999999877664
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=8.6e-15 Score=108.30 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG-SKTVIQIRSHAQKYFL 125 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyG-rdWkkIA~~Vg-TRT~~QcRSHaQKYF~ 125 (346)
.++.||.|||++|++++++|| ++|++||++|+ +||..|||.||++||+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 467899999999999999999 79999999999 9999999999999985
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.9e-14 Score=106.79 Aligned_cols=49 Identities=31% Similarity=0.482 Sum_probs=46.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyG-rdWkkIA~~VgTRT~~QcRSHaQKYF~ 125 (346)
..+..||.|||++|++++++|| .+|++||++|++||..|||.||++|+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4678999999999999999999 699999999999999999999999865
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.45 E-value=4.3e-14 Score=131.23 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=60.1
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019067 63 EDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 63 e~~~kKirkPy~i~k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl 127 (346)
++...+.|+|+.+.+....||+||+++|++||.+||++|..||++||+||..|||+||.+|+.++
T Consensus 117 ~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 117 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp TTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred HhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999999999999999999999999999999999998887663
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.43 E-value=1.6e-13 Score=98.42 Aligned_cols=48 Identities=25% Similarity=0.491 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFL 125 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF~ 125 (346)
+++.||.||+++|++++++||. +|..||++|++||..|||.||++|+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999997 99999999999999999999998863
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=2.7e-13 Score=99.91 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=45.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 76 TKSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 76 ~k~r~~WTeEEh~lFLeaLekyG-rdWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
...++.||.||+++|++++++|| ++|..||++|++||..|||.||++|+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 34678999999999999999999 59999999999999999999998774
No 9
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.39 E-value=2.7e-13 Score=97.36 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
.++.||+||+++|++++++||. +|..||++|++||..|||.||++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999996 8999999999999999999998875
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=9.5e-13 Score=98.80 Aligned_cols=56 Identities=23% Similarity=0.512 Sum_probs=50.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019067 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (346)
Q Consensus 76 ~k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~g~ 132 (346)
...++.||.||+++|++++++||.+|.+||+++| ||..|||.||++|+.+..+.+.
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 3467899999999999999999999999999655 9999999999999998876543
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=1.1e-12 Score=102.35 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyG----rdWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
..++.||.||+++|+++|++|| .+|.+||++|++||..||+.||+.+.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4778999999999999999999 59999999999999999999987663
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.33 E-value=2.2e-12 Score=93.19 Aligned_cols=46 Identities=15% Similarity=0.401 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHH
Q 019067 79 RESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 124 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLekyG-rdWkkIA~~Vg--TRT~~QcRSHaQKYF 124 (346)
++.||+||+++|++++++|| ++|..||++++ +||..||+.||.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999 69999999999 999999999998875
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=98.75 Aligned_cols=50 Identities=14% Similarity=0.379 Sum_probs=45.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019067 76 TKSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (346)
Q Consensus 76 ~k~r~~WTeEEh~lFLeaLekyG-rdWkkIA~~VgTRT~~QcRSHaQKYF~ 125 (346)
..+++.||.||+++|++++++|| .+|..||.+|++||..|||.||++|+.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 34678999999999999999999 799999999999999999999988743
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.32 E-value=2.9e-12 Score=97.04 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=47.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 019067 76 TKSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYFLK 126 (346)
Q Consensus 76 ~k~r~~WTeEEh~lFLeaLekyG-rdWkkIA~~Vg--TRT~~QcRSHaQKYF~k 126 (346)
.+.++.||.||+++|++++++|| ++|..||++++ +||..|||.||.+|+..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 45789999999999999999999 69999999999 99999999999888654
No 15
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.30 E-value=1.4e-12 Score=131.43 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=58.4
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019067 63 EDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 63 e~~~kKirkPy~i~k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl 127 (346)
+......|.|+.+.+...+||+||+++|++||.+||+||..|+++|||||..|||+|+++|+.++
T Consensus 364 ~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 364 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp TTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred hcccccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 34455677888888999999999999999999999999999999999999999999998886654
No 16
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.96 E-value=2.5e-13 Score=108.37 Aligned_cols=56 Identities=27% Similarity=0.386 Sum_probs=50.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 019067 75 ITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (346)
Q Consensus 75 i~k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~ 130 (346)
....++.||+||+++|++++++||.+|..||.+|++||..||++||+.|+.++...
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 34577899999999999999999999999999999999999999999988776443
No 17
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=8.2e-12 Score=93.25 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=41.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 019067 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (346)
Q Consensus 76 ~k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHa 120 (346)
.+....||+||+++|+++|.+||++|.+||.+|++||..||+.||
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 356689999999999999999999999999999999999999864
No 18
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.26 E-value=8.8e-12 Score=94.38 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 124 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyG-rdWkkIA~~Vg--TRT~~QcRSHaQKYF 124 (346)
.+..||+||+++|+++|++|| ++|..|+++++ +||..|||.+|.++.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999 59999999876 899999999997763
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.22 E-value=1.7e-11 Score=99.59 Aligned_cols=63 Identities=22% Similarity=0.455 Sum_probs=50.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 019067 78 SRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRP 141 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyG----rdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~g~~~~iP~pr~ 141 (346)
..+.||.||+++|+++|.+|| .+|.+||++|++||..||+.||++++..+.... ...+|.|..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie-sg~vp~P~y 73 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE-SGKVPFPNY 73 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH-HSSCCC---
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh-cCCCCCCCC
Confidence 357899999999999999997 489999999999999999999999987764431 124666543
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.17 E-value=5.7e-11 Score=96.32 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=49.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~ 130 (346)
.+++.||+||+++|++++.+||.+|..||++|++||..||++||..+..++.+.
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 357899999999999999999999999999999999999999998887776543
No 21
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.14 E-value=1.1e-10 Score=89.71 Aligned_cols=56 Identities=32% Similarity=0.439 Sum_probs=50.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCch---HHHHHHHhC--CCCHHHHHHHHHHHHHHHhhc
Q 019067 75 ITKSRESWTEQEHDKFLEALQLFDRD---WKKIEAFIG--SKTVIQIRSHAQKYFLKVQKN 130 (346)
Q Consensus 75 i~k~r~~WTeEEh~lFLeaLekyGrd---WkkIA~~Vg--TRT~~QcRSHaQKYF~kl~k~ 130 (346)
..|.+-.||+|+|++|++|++++|.+ |++|-++++ +.|..||+||.|||+.+++|.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 35678999999999999999999964 899999977 579999999999999999763
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.14 E-value=6.1e-11 Score=92.51 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=43.4
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHH
Q 019067 69 IRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQ 121 (346)
Q Consensus 69 irkPy~i~k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQ 121 (346)
....+.+..+++.||+||+++|++++++||.+|.+||+++ +||..|||+||.
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 3444555678899999999999999999999999999999 999999999884
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.14 E-value=4.8e-11 Score=99.47 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=46.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 76 ~k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
...++.||+||+++|++++++||.+|..||++|++||..|||.||.+|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 4567899999999999999999999999999999999999999998875
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.10 E-value=8.3e-11 Score=97.99 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=46.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl 127 (346)
.+++.||+||+++|++++++||.+|.+||++|++||..||++||..+..++
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999999987665543
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.09 E-value=7.3e-11 Score=94.71 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
.+++.||+||+++|++++++||.+|..||++|++||..||++||..+.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999987654
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.08 E-value=8.3e-11 Score=98.43 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=48.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k 129 (346)
.+++.||.||+++|++++.+||.+|..||++|++||..||++||..++.+..+
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999999999999888766543
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.08 E-value=1.2e-10 Score=94.43 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 79 RESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
++.||.||+++|++++++||. +|..||++|++||..||+.||.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 478999999999999999995 9999999999999999999998774
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.07 E-value=9.1e-11 Score=94.15 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
.++.||+||+++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 4689999999999999999996 8999999999999999999998874
No 29
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.6e-10 Score=85.97 Aligned_cols=47 Identities=19% Similarity=0.506 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHH-HhCCCCHHHHHHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGrdWkkIA~-~VgTRT~~QcRSHaQKYF~kl 127 (346)
....||+||+++|++||.+||++|..|++ +|++||..||..+ ||...
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f---YY~wK 55 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITF---YYYWK 55 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHH---HHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHH---Hhccc
Confidence 56899999999999999999999999998 6999999999974 55544
No 30
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.01 E-value=7.7e-10 Score=85.92 Aligned_cols=48 Identities=19% Similarity=0.438 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLK 126 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyG----rdWkkIA~~VgTRT~~QcRSHaQKYF~k 126 (346)
....||.||+++|.++|.+|+ .+|.+||+++ .||..||+.||+++...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 457899999999999999998 4899999999 59999999998776443
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.01 E-value=1.3e-10 Score=97.27 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 79 RESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLekyG-rdWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
++.||.||+++|++++++|| .+|..||.+|++||..||+.||++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 57899999999999999999 69999999999999999999998885
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.00 E-value=3.9e-10 Score=93.73 Aligned_cols=48 Identities=19% Similarity=0.437 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
..++.||+||+++|++++++||. +|..||++|++||..||+.||.+|+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 46789999999999999999995 8999999999999999999998764
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.96 E-value=2.8e-10 Score=94.60 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=43.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 123 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKY 123 (346)
..++.||+||+++|++++++||.+|..||++|++||..||++||..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998654
No 34
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=1.5e-09 Score=85.07 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----hHHHHHHHhCCCCHHHHHHHHHHH
Q 019067 79 RESWTEQEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKY 123 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLekyGr----dWkkIA~~VgTRT~~QcRSHaQKY 123 (346)
...||.||+++|++||..|++ +|.+||++||+||..||+.||+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467999999999999999985 799999999999999999986543
No 35
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.91 E-value=2e-09 Score=85.67 Aligned_cols=48 Identities=10% Similarity=0.340 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHcCc-hHHHHHHH----hCCCCHHHHHHHHHHHHHHH
Q 019067 80 ESWTEQEHDKFLEALQLFDR-DWKKIEAF----IGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 80 ~~WTeEEh~lFLeaLekyGr-dWkkIA~~----VgTRT~~QcRSHaQKYF~kl 127 (346)
.+||+||+++|++++++||. +|++|++. +..||..|||.+|.+++.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999985 78999999999999887654
No 36
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.91 E-value=5.9e-09 Score=88.59 Aligned_cols=53 Identities=13% Similarity=0.306 Sum_probs=47.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 019067 75 ITKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 75 i~k~r~~WTeEEh~lFLeaLekyGr-dWkkIA~~V----gTRT~~QcRSHaQKYF~kl 127 (346)
..+.++.||.||++.|++++++||. +|..|++.. ..||..|||.+|.+++..-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4457899999999999999999996 999999764 7899999999999887654
No 37
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.86 E-value=2.8e-09 Score=81.96 Aligned_cols=48 Identities=27% Similarity=0.505 Sum_probs=42.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHH-HhCCCCHHHHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrdWkkIA~-~VgTRT~~QcRSHaQKYF~kl 127 (346)
+....||+||+++|++||.+||++|..|+. +|++||..||..+ |+...
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f---YY~wK 54 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEY---YYMWK 54 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHH---HHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHH---HHhhc
Confidence 466899999999999999999999999999 7999999999985 45444
No 38
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.85 E-value=4.7e-09 Score=89.08 Aligned_cols=55 Identities=11% Similarity=0.327 Sum_probs=49.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 019067 73 YTITKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 73 y~i~k~r~~WTeEEh~lFLeaLekyGr-dWkkIA~~V----gTRT~~QcRSHaQKYF~kl 127 (346)
....+.++.||.||++.|++++++||. +|..|+++. ..||..||+.+|.+++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 445678899999999999999999996 999999875 7899999999999887654
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.82 E-value=4e-09 Score=87.52 Aligned_cols=52 Identities=10% Similarity=0.334 Sum_probs=45.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 019067 75 ITKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLK 126 (346)
Q Consensus 75 i~k~r~~WTeEEh~lFLeaLekyGr-dWkkIA~~V----gTRT~~QcRSHaQKYF~k 126 (346)
..+.+..||+||++.|++|+++||. +|..|++.. ..||..||+.+|.+++.+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999999996 999999754 789999999999877554
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.82 E-value=3.3e-09 Score=90.86 Aligned_cols=48 Identities=17% Similarity=0.384 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
..++.||.||+++|++++++||. +|..||+++++||..||+.||++|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 46789999999999999999995 8999999999999999999998774
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.80 E-value=2e-09 Score=92.24 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 123 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKY 123 (346)
..++.||+||+.+|++++++||.+|..||++|++||..||++||..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999998654
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.72 E-value=1.3e-08 Score=77.74 Aligned_cols=45 Identities=13% Similarity=0.417 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHH---HHhCCCCHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRDWKKIE---AFIGSKTVIQIRSHAQ 121 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrdWkkIA---~~VgTRT~~QcRSHaQ 121 (346)
.++..||+||++.|++++++||+.|++|+ .++..||...++..|.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHH
Confidence 47889999999999999999999999999 5788999999999653
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.72 E-value=1.3e-08 Score=82.32 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHa 120 (346)
+....||+||+++|.+++.+||++|.+|+++|++||..||..|+
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999863
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.60 E-value=2.7e-09 Score=84.15 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----hHHHHHHHhCCCCHHHHHHHHH
Q 019067 79 RESWTEQEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQ 121 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLekyGr----dWkkIA~~VgTRT~~QcRSHaQ 121 (346)
...||.||+++|.+||.+|++ +|.+||+.||+||+.||+.|+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999996 7999999999999999999985
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.50 E-value=4.2e-08 Score=91.86 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCch------HHHHHHHhCCCCHHHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFDRD------WKKIEAFIGSKTVIQIRSHAQKYFLK 126 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyGrd------WkkIA~~VgTRT~~QcRSHaQKYF~k 126 (346)
.++..||+||++++|+++++||.. |..||.++++||..|||+||..|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 357899999999999999999963 99999999999999999999988654
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.68 E-value=4.8e-05 Score=56.82 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-chHHHHHH-HhCCCCHHHHHHHHHHHH
Q 019067 79 RESWTEQEHDKFLEALQLF--------D-RDWKKIEA-FIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLeky--------G-rdWkkIA~-~VgTRT~~QcRSHaQKYF 124 (346)
|..||+||+..+++.|..| | .-|+.|++ .+..+|..++|.||.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999 5 38999999 899999999999988764
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.58 E-value=0.00017 Score=58.85 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhh
Q 019067 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLekyGrdWkkIA~~V-----gTRT~~QcRSHaQKYF~kl~k 129 (346)
...||.||.+.|++.+++||-+|..|+... +.||.+++++++-..-.++.+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999877 579999999986554445444
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.34 E-value=0.0022 Score=52.67 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc---hHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019067 78 SRESWTEQEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGr---dWkkIA~~VgTRT~~QcRSHaQKYF~kl~k 129 (346)
.-..||.||+.-+|.+.++-|. .|..||+.+|.|++.||+.|+|....-.++
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999995 899999999999999999998876444443
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.26 E-value=4.1e-05 Score=77.61 Aligned_cols=42 Identities=14% Similarity=0.426 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 019067 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHa 120 (346)
...||++|..+|.++|.+||++|.+|+++|++|+..+|..|+
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 358999999999999999999999999999999999999864
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.98 E-value=0.00073 Score=64.97 Aligned_cols=48 Identities=19% Similarity=0.422 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019067 80 ESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 80 ~~WTeEEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF~kl 127 (346)
..||..+-..|+.|+.+||+ +|..||+.|++||..+|+.|++-++.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 47999999999999999998 9999999999999999999998777665
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.36 E-value=0.0064 Score=47.20 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=39.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC----------chHHHHHHHhC----CCCHHHHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFD----------RDWKKIEAFIG----SKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyG----------rdWkkIA~~Vg----TRT~~QcRSHaQKYF~kl 127 (346)
+.+..||++|..+||++..... ..|..||+.+. .||+.||+..|......-
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3567999999999999986532 17999997654 699999999886554443
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.06 E-value=0.018 Score=47.11 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhh
Q 019067 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLekyGrdWkkIA~~V-----gTRT~~QcRSHaQKYF~kl~k 129 (346)
...||.||.+.|.+.+++|+-+|--|+... +.||.++++.|+=....++.+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999654 379999999987555555544
No 53
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.02 E-value=0.0011 Score=51.86 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHcCc---hHHHHHHHhCCCCHHHHHHHHHHHH
Q 019067 80 ESWTEQEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYF 124 (346)
Q Consensus 80 ~~WTeEEh~lFLeaLekyGr---dWkkIA~~VgTRT~~QcRSHaQKYF 124 (346)
-.||.|||.-+|...++-|. .|..||+.+ .||+.||..++|...
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLM 61 (70)
Confidence 48999999999999999996 899999888 799999999877653
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.66 E-value=0.025 Score=54.40 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc----hHHHHH------------HHhCCCCHHHHHHHHHHHHHHHhhc
Q 019067 78 SRESWTEQEHDKFLEALQLFDR----DWKKIE------------AFIGSKTVIQIRSHAQKYFLKVQKN 130 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGr----dWkkIA------------~~VgTRT~~QcRSHaQKYF~kl~k~ 130 (346)
++..||+|||..||-+|.+||- +|..|. -|+.+||+.+|..|++-....+.|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999994 899996 3788999999999998776666553
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.17 E-value=0.033 Score=48.91 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=42.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC--c-hHHHHHHH--hCCCCHHHHHHHHHHHHHHHhh
Q 019067 77 KSRESWTEQEHDKFLEALQLFD--R-DWKKIEAF--IGSKTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyG--r-dWkkIA~~--VgTRT~~QcRSHaQKYF~kl~k 129 (346)
+....||+.|-..|+.++.+|| . +|..|++. +..||...|+.+++.+.....+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999 3 89999865 4589999999988877666544
No 56
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.59 E-value=0.072 Score=52.63 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHcCc-hHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 019067 80 ESWTEQEHDKFLEALQLFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFLK 126 (346)
Q Consensus 80 ~~WTeEEh~lFLeaLekyGr-dWkkIA~~Vg-TRT~~QcRSHaQKYF~k 126 (346)
..||..+=..|+.|+++||| +...||..|+ +||..+|+.+++-|+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 47999999999999999998 7999999998 99999999887666554
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.14 E-value=0.091 Score=46.09 Aligned_cols=49 Identities=16% Similarity=0.399 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHH--H------------hCCCCHHHHHHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEA--F------------IGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyG-rdWkkIA~--~------------VgTRT~~QcRSHaQKYF~kl 127 (346)
....||.+||..||.|+.+|| ++|..|-. - ..+.+...+..++. |++++
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~ 196 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL 196 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence 355799999999999999999 79999963 1 12355677888874 55554
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=90.18 E-value=0.51 Score=44.42 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.9
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019067 100 DWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 100 dWkkIA~~VgTRT~~QcRSHaQKYF~kl 127 (346)
-|+.||++.+.+|...+|.++.|+..+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999998876543
No 59
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=89.78 E-value=0.4 Score=38.59 Aligned_cols=55 Identities=24% Similarity=0.486 Sum_probs=37.5
Q ss_pred HHHHHHHHcCc--------hHHHHHHHhCC-----CCHHHHHHHHHHHHHH---HhhcCCCCCCCCCCCCC
Q 019067 89 KFLEALQLFDR--------DWKKIEAFIGS-----KTVIQIRSHAQKYFLK---VQKNGTSEHVPPPRPKR 143 (346)
Q Consensus 89 lFLeaLekyGr--------dWkkIA~~VgT-----RT~~QcRSHaQKYF~k---l~k~g~~~~iP~pr~KR 143 (346)
+|-.++.+.|+ .|+.|++.+|- -...++|.|+++|+.. ..+......+|+..||+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 44555677773 79999988873 2247899999998443 33344556788877764
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.74 E-value=0.53 Score=44.46 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=29.7
Q ss_pred CCCCCCcc-cccC---CCCCCHHHHHHHHHHHHHcC-chHHHHH
Q 019067 67 KKIRKPYT-ITKS---RESWTEQEHDKFLEALQLFD-RDWKKIE 105 (346)
Q Consensus 67 kKirkPy~-i~k~---r~~WTeEEh~lFLeaLekyG-rdWkkIA 105 (346)
.+.+-|+. +.+. .-.|+.+|+..||.||-+|| +.|..|.
T Consensus 152 ~~f~lp~~~~~~~~~W~c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 152 LKFSLGNNTPKPVQNWSSNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp GGCCCTTCCCCCCTTSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ceeeccCccCCCCCCCCCCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 45555554 2222 34699999999999999999 6999996
No 61
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.53 E-value=1.5 Score=35.00 Aligned_cols=50 Identities=26% Similarity=0.439 Sum_probs=36.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC---ch-H------------HHHHHHhC-----CCCHHHHHHHHHHHHHH
Q 019067 77 KSRESWTEQEHDKFLEALQLFD---RD-W------------KKIEAFIG-----SKTVIQIRSHAQKYFLK 126 (346)
Q Consensus 77 k~r~~WTeEEh~lFLeaLekyG---rd-W------------kkIA~~Vg-----TRT~~QcRSHaQKYF~k 126 (346)
+..+.|.++=+..|++||..|- +. + .-|+.||- .||..||-+|-|-.-..
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 4578999999999999999984 21 1 12555543 69999999998854333
No 62
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=79.84 E-value=5.4 Score=39.43 Aligned_cols=53 Identities=13% Similarity=0.308 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc----hHHHHHH------------HhCCCCHHHHHHHHHHHHHHHhhc
Q 019067 78 SRESWTEQEHDKFLEALQLFDR----DWKKIEA------------FIGSKTVIQIRSHAQKYFLKVQKN 130 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGr----dWkkIA~------------~VgTRT~~QcRSHaQKYF~kl~k~ 130 (346)
++..||+||+..||-+|.+||- .|.+|-. |+.+||+..|.-|+.-....+.|.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE 295 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKE 295 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999993 6999942 277999999999997776666665
No 63
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=77.94 E-value=4.3 Score=38.25 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc---hHHHHHH--HhCCCCHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFDR---DWKKIEA--FIGSKTVIQIRSHAQK 122 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGr---dWkkIA~--~VgTRT~~QcRSHaQK 122 (346)
.++.||+.|-..|+.++.+||. +|..|.+ -+..|+...++.-++-
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~ 51 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDE 51 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 3578999999999999999993 8999973 4667888776664443
No 64
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=67.40 E-value=6.3 Score=32.51 Aligned_cols=40 Identities=8% Similarity=0.308 Sum_probs=28.7
Q ss_pred HHHHHHHcCc--------hHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 019067 90 FLEALQLFDR--------DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 90 FLeaLekyGr--------dWkkIA~~VgTRT----~~QcRSHaQKYF~kl~k 129 (346)
|-.+|.+.|+ .|+.|++.+|--+ ..++|.|+.+|+..-.+
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4445566662 7999999888543 57999999999666444
No 65
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=63.47 E-value=7.3 Score=31.75 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=29.5
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019067 90 FLEALQLFD--------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (346)
Q Consensus 90 FLeaLekyG--------rdWkkIA~~VgTRT~~QcRSHaQKYF~kl~ 128 (346)
|..++...| +.|+.|++.+|-....++|.|+.+|+..-.
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 444455566 279999999887668999999999976543
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=60.70 E-value=19 Score=28.57 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=29.2
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 019067 90 FLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 90 FLeaLekyG--------rdWkkIA~~VgTRT----~~QcRSHaQKYF~kl~k 129 (346)
|-..+.+.| +.|+.|++.+|--. ..++|.|+.+|+..-..
T Consensus 49 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 49 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 344456666 27999999888533 57999999999776544
No 67
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=55.81 E-value=16 Score=29.73 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHcC--------chHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 019067 89 KFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 89 lFLeaLekyG--------rdWkkIA~~VgTRT----~~QcRSHaQKYF~kl~k 129 (346)
+|-.++.+.| +.|+.|++.+|-.. ..++|.|+.+|+..-.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3445566666 27999999887543 67999999999666443
No 68
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=55.74 E-value=16 Score=30.24 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019067 90 FLEALQLFD--------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 90 FLeaLekyG--------rdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k 129 (346)
|-.+|.+.| +.|+.|++-+|-....++|.|+.+|+..-.+
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 444455555 3799999998876799999999999888765
No 69
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=52.28 E-value=26 Score=25.04 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCC
Q 019067 84 EQEHDKFLEALQLFDRDWKKIEAFIGS 110 (346)
Q Consensus 84 eEEh~lFLeaLekyGrdWkkIA~~VgT 110 (346)
+-|.+.+.++|+.+|.++.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457888999999999999999999995
No 70
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=51.45 E-value=25 Score=28.86 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.4
Q ss_pred HHHHHHHHcC--------chHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 019067 89 KFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 89 lFLeaLekyG--------rdWkkIA~~VgTRT----~~QcRSHaQKYF~kl~k 129 (346)
+|-.++.+.| +.|+.|++.+|-.. ..++|.|+++|+..-..
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 3444566666 27999999888532 46999999999776544
No 71
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=49.62 E-value=13 Score=29.01 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=22.5
Q ss_pred hHHHHHHHhCCCC----HHHHHHHHHHHHHHHh
Q 019067 100 DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQ 128 (346)
Q Consensus 100 dWkkIA~~VgTRT----~~QcRSHaQKYF~kl~ 128 (346)
.|++|++.+|-.. ..++|.|+++|+..-.
T Consensus 59 ~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 59 KWSKVGSRLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp THHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred cHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 7999998887422 6789999999876543
No 72
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=42.78 E-value=75 Score=21.99 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019067 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~ 128 (346)
.-..+|+.|.+.|.. + ..|...+.||+.+|- +..-|+.|..+-+.++.
T Consensus 8 ~~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 8 SKPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHC
Confidence 345688888887766 4 567799999999985 88889988877776664
No 73
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=42.25 E-value=43 Score=27.52 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=28.6
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 019067 90 FLEALQLFD--------RDWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 90 FLeaLekyG--------rdWkkIA~~VgTR-----T~~QcRSHaQKYF~kl~k 129 (346)
|-.+|...| +.|+.|++.+|-- ...++|.|+.+|+..-.+
T Consensus 57 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 57 LYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 344556666 3799999888832 268999999999766544
No 74
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=41.42 E-value=69 Score=21.91 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019067 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 80 ~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k 129 (346)
..+++.|.+.|.. .-..|..++.||+.+|- +...|+.|..+-..++++
T Consensus 14 ~~L~~~~r~il~l-~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLL-TQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHH-HHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHH-HHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 3577666666553 23557799999999985 788888877766666644
No 75
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.15 E-value=1.1e+02 Score=23.24 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 019067 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (346)
Q Consensus 80 ~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~ 130 (346)
...|+.|.+.|.. + ..|..-+.||+.+|- +..-|+.|..+-+.++...
T Consensus 26 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 4688888888776 4 778899999999986 8899999988888877543
No 76
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=38.08 E-value=45 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHhCC
Q 019067 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGS 110 (346)
Q Consensus 82 WTeEEh~lFLeaLekyGrdWkkIA~~VgT 110 (346)
..+-|...+.++|+++|++..+.|+.+|-
T Consensus 48 l~~~E~~~i~~aL~~~~gn~~~aA~~LGI 76 (91)
T 1ntc_A 48 QPELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 33557888999999999999999999995
No 77
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=37.82 E-value=36 Score=28.74 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=22.9
Q ss_pred hHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 019067 100 DWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 100 dWkkIA~~VgTR-----T~~QcRSHaQKYF~kl~k 129 (346)
.|+.|++-+|-- ...++|.|+.+|+..-..
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 699999888742 257999999999655443
No 78
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=37.41 E-value=30 Score=28.76 Aligned_cols=30 Identities=13% Similarity=0.446 Sum_probs=23.4
Q ss_pred hHHHHHHHhCC-----CCHHHHHHHHHHHHHHHhh
Q 019067 100 DWKKIEAFIGS-----KTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 100 dWkkIA~~VgT-----RT~~QcRSHaQKYF~kl~k 129 (346)
.|+.|++-+|- -...++|.|+.||+..-..
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 79999988873 2357899999999877543
No 79
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=37.16 E-value=32 Score=28.51 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019067 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (346)
Q Consensus 85 EEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~g~ 132 (346)
+-+.++|+.|++-|+ .|+.||+.+|- +...|+.|. .++.+.|.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl----~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRI----QKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHH----HHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 567889999999998 99999999995 888888764 55666665
No 80
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=34.74 E-value=68 Score=22.68 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019067 81 SWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (346)
Q Consensus 81 ~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~ 128 (346)
.+|+.|.+.|.. + ..|...+.||+.+|- +...|+.|..+-+.++.
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 467777776655 4 567799999999985 78888888776666653
No 81
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=33.78 E-value=81 Score=23.99 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHHHHHc-----Cc--hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Q 019067 87 HDKFLEALQLF-----DR--DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVP 137 (346)
Q Consensus 87 h~lFLeaLeky-----Gr--dWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~g~~~~iP 137 (346)
.+..|+.|+.+ |. .-..|++.+|- +...|| +|+..+.+.|.....|
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S~~TVr----r~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGL-SIYQVR----LYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHH----HHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-CHHHHH----HHHHHHHHCCcEEecC
Confidence 45678888888 54 78999999998 777777 4788888888765554
No 82
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=32.31 E-value=99 Score=23.53 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 019067 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl 127 (346)
....-|+.|.+.|.... .|..-+.||+.++- +..-|+.|..+-+.|+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~i-S~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALHL-SKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 34567888888776544 78899999999985 8899999988877776
No 83
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.88 E-value=90 Score=23.00 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019067 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (346)
Q Consensus 78 ~r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~ 128 (346)
.-...|+.|.+.|.. + ..|...+.||+.+|- +...|+.|..+-+.++.
T Consensus 18 ~~~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 18 DVNQLTPRERDILKL-I-AQGLPNKMIARRLDI-TESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CGGGSCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 345688988887776 4 567899999999985 88889988776666653
No 84
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=31.38 E-value=56 Score=25.26 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHhCC
Q 019067 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGS 110 (346)
Q Consensus 82 WTeEEh~lFLeaLekyGrdWkkIA~~VgT 110 (346)
..+-|.+.+.++|+++|.+..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 33557788889999999999999999995
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.80 E-value=1.1e+02 Score=23.58 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=22.9
Q ss_pred cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019067 97 FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 97 yGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k 129 (346)
.|...+.||+.+|- +...|+.|..+-..++++
T Consensus 123 ~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 123 RGYSYREIATILSK-NLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 45689999999884 777777776665555543
No 86
>3fdq_A Motility gene repressor MOGR; protein-DNA complex, helix-turn-helix, minor groove binding, cytoplasm; 1.75A {Listeria monocytogenes}
Probab=29.70 E-value=1.5e+02 Score=26.20 Aligned_cols=63 Identities=27% Similarity=0.363 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHH---HcCchHHHHHHHhC-------CCCHHHHHHHHHHHHHHHhhcCCCCCCCC--CCCCCC
Q 019067 79 RESWTEQEHDKFLEALQ---LFDRDWKKIEAFIG-------SKTVIQIRSHAQKYFLKVQKNGTSEHVPP--PRPKRK 144 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLe---kyGrdWkkIA~~Vg-------TRT~~QcRSHaQKYF~kl~k~g~~~~iP~--pr~KRk 144 (346)
.-.|=.-|-++|-+.++ .+|-+--.|+++|. -||+.|..+ -||.-.+..-..++|+. |.||||
T Consensus 69 ~i~WLKsELELLya~YQf~q~h~lni~~iSk~iSkn~L~lFPKTeSQLQN---TYYKLKk~ei~fEnI~K~KPGRKrK 143 (170)
T 3fdq_A 69 NISWLKIELELLSACYQIAILEDMKVLDISEMLSLNDLRIFPKTPSQLQN---TYYKLKKELIQVEDIPKNKPGRKRK 143 (170)
T ss_dssp SEEECHHHHHHHHHHHHHHHHTTCCHHHHHHHHSTTTTCSSSSCHHHHHH---HHHHHHTTSSCSSCEECCCCSCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCchhhHHHHhhHhhhccCCCCHHHHHH---HHHHHHhhhcchhhccccCCCcccc
Confidence 44799999998887764 45667778888876 489999887 34443333334566665 445554
No 87
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=26.50 E-value=60 Score=26.20 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=41.7
Q ss_pred ccCCCCCCHHH-----------HHHHHHHHHHcC-----chHHH---HHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019067 76 TKSRESWTEQE-----------HDKFLEALQLFD-----RDWKK---IEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (346)
Q Consensus 76 ~k~r~~WTeEE-----------h~lFLeaLekyG-----rdWkk---IA~~VgTRT~~QcRSHaQKYF~kl~k~g~ 132 (346)
+-..+.||.|+ ..-++.-|+.+| +.|+- |.....|+...|...-+.++|..-.+.|+
T Consensus 10 ~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVaKtanK~qLiaAY~~lfE~~~~~g~ 85 (88)
T 2lc3_A 10 NGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRKNRNCSQLIAAYKDFCEHGTKSGL 85 (88)
T ss_dssp SCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHHHHSCHHHHHHHHHHHHHHTCTTTS
T ss_pred cCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHHhcCcHHHHHHHHHHHHhccccccc
Confidence 34578999999 345667777777 36765 55667788999999888888877665554
No 88
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=24.65 E-value=1.1e+02 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCC
Q 019067 84 EQEHDKFLEALQLFDRDWKKIEAFIGS 110 (346)
Q Consensus 84 eEEh~lFLeaLekyGrdWkkIA~~VgT 110 (346)
+-|...+.++|+.+|++..+.|+.+|-
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGI 83 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGI 83 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 457788889999999999999999995
No 89
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=24.55 E-value=1.8e+02 Score=21.42 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=22.9
Q ss_pred cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 019067 97 FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (346)
Q Consensus 97 yGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~k 129 (346)
.|...+.||+.+|- +...|+.|..+-+.++++
T Consensus 52 ~g~s~~eIA~~lgi-s~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 52 RGWSTAQIATDLGI-AEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 35688999999884 677777776666666544
No 90
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.54 E-value=95 Score=26.15 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019067 84 EQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (346)
Q Consensus 84 eEEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~g~ 132 (346)
++-+.++|+.|+..|+ .|..||+.+|- +...|+.| +.++.+.|.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lgl-S~~tv~~r----l~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGL-AESTIHER----IRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHH----HHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 4567789999999997 99999999995 88888865 556666665
No 91
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.31 E-value=1.4e+02 Score=23.78 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019067 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (346)
Q Consensus 85 EEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~g~ 132 (346)
+-+.++|+.|+..|+ .|+.||+.+|- +...|+.| +.++.+.|.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~----l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT-TRQRIARR----IDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS-CHHHHHHH----HHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 456688899999887 99999999995 77777765 455666665
No 92
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=23.15 E-value=2e+02 Score=20.24 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHH---cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019067 81 SWTEQEHDKFLEALQL---FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (346)
Q Consensus 81 ~WTeEEh~lFLeaLek---yGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~ 128 (346)
.-++.|.+.|..-+-. .|..|+.||+.+|- +...|+.|-.+-+.+++
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~i-s~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGV-TRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 3566666666554422 46699999999984 77777777766677775
No 93
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=22.61 E-value=1.3e+02 Score=22.07 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHhhcCChhhHHHHHHHhhhcccc
Q 019067 291 INFETVLLLMRNLAINLTSPEFEDHKRLLSLYDVES 326 (346)
Q Consensus 291 Id~ETvLLLmrNLs~NL~sp~fe~~~~llssy~~~~ 326 (346)
|+.+-+.-+|+.|-.+++.. +.+.++..+|.+.
T Consensus 46 I~~~El~~~l~~~g~~~~~~---e~~~l~~~~D~d~ 78 (94)
T 2kz2_A 46 ISAAELRHVMTNLGEKLTDE---EVDEMIREADIDG 78 (94)
T ss_dssp BCHHHHHHHHHHHTCCCCHH---HHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCCCCCHH---HHHHHHHHhCCCC
Confidence 78888888888887766544 3456777776654
No 94
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.42 E-value=2.1e+02 Score=22.19 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 019067 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (346)
Q Consensus 79 r~~WTeEEh~lFLeaLekyGrdWkkIA~~VgTRT~~QcRSHaQKYF~kl~ 128 (346)
...-|+.|.+.|.. + ..|...+.||+.++- +..-|+.|...-+.++.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 35578888887755 3 368899999999986 88999998877777763
No 95
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.13 E-value=1.7e+02 Score=23.48 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 019067 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (346)
Q Consensus 85 EEh~lFLeaLekyGr-dWkkIA~~VgTRT~~QcRSHaQKYF~kl~k~g~ 132 (346)
+-+.++|..|+..|+ .|+.||+.+|- +...|+.| +.++...|.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~----l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGL-AESTIHER----IRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCS-CHHHHHHH----HHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 446688999999987 99999999995 77778765 455666665
Done!