Your job contains 1 sequence.
>019068
MPREMESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEE
VEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRD
FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA
KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY
SRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG
RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019068
(346 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083248 - symbol:AT3G52660 species:3702 "Arabi... 988 2.2e-103 2
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 863 2.6e-86 1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 387 8.0e-36 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 386 9.2e-36 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 386 9.2e-36 1
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 390 1.7e-35 1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 387 2.1e-35 1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 387 2.1e-35 1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 387 2.2e-35 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 387 2.4e-35 1
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 386 2.7e-35 1
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 378 6.5e-35 1
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 378 1.6e-34 1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 378 1.7e-34 1
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 381 1.8e-34 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 379 2.2e-34 1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 378 2.3e-34 1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 378 2.3e-34 1
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 378 2.3e-34 1
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 378 2.3e-34 1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 378 2.3e-34 1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 373 2.6e-34 1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 374 2.7e-34 1
TAIR|locus:2146564 - symbol:AT5G28390 species:3702 "Arabi... 372 2.8e-34 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 371 9.0e-34 1
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 371 9.8e-34 1
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 367 1.2e-33 1
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 370 1.2e-33 1
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 370 1.3e-33 1
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 369 1.5e-33 1
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 370 1.6e-33 1
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 368 2.1e-33 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 367 2.7e-33 1
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 367 2.7e-33 1
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 365 4.6e-33 1
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti... 356 1.4e-32 1
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 355 1.8e-32 1
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:... 360 1.8e-32 1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 359 2.1e-32 1
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 359 2.1e-32 1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 353 2.9e-32 1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 357 3.5e-32 1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 357 3.5e-32 1
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 355 3.9e-32 1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 355 5.9e-32 1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 351 1.6e-31 1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 345 2.0e-31 1
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 345 2.0e-31 1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 345 2.0e-31 1
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 345 4.0e-31 1
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 345 4.0e-31 1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 345 4.0e-31 1
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 345 4.0e-31 1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 345 4.0e-31 1
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 344 5.1e-31 1
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 345 7.5e-31 1
TAIR|locus:2042366 - symbol:AT2G44710 species:3702 "Arabi... 328 8.9e-31 2
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 342 1.6e-30 1
DICTYBASE|DDB_G0282293 - symbol:rnpA "putative RNA bindin... 318 5.3e-28 1
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 306 2.8e-27 1
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 308 9.8e-27 1
UNIPROTKB|Q5T0W7 - symbol:A1CF "APOBEC1 complementation f... 267 3.8e-23 1
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 265 2.1e-22 1
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein... 251 5.5e-21 1
UNIPROTKB|D6RBS9 - symbol:RBM47 "RNA-binding protein 47" ... 246 6.3e-21 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 229 3.0e-18 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 226 3.2e-17 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 221 6.5e-17 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 221 1.2e-16 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 222 3.8e-16 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 222 3.8e-16 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 220 4.7e-16 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 198 9.7e-16 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 216 1.7e-15 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 208 3.8e-15 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 210 9.4e-15 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 209 1.9e-14 1
UNIPROTKB|E1C0G3 - symbol:DND1 "Uncharacterized protein" ... 187 1.9e-14 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 208 2.0e-14 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 206 3.7e-14 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 206 4.9e-14 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 201 1.1e-13 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 201 1.6e-13 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 195 2.3e-13 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 200 2.3e-13 1
UNIPROTKB|D6REZ6 - symbol:RBM47 "RNA-binding protein 47" ... 177 2.8e-13 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 197 4.6e-13 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 197 4.6e-13 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 175 4.6e-13 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 196 5.9e-13 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 196 6.4e-13 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 196 6.4e-13 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 187 6.7e-13 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 173 7.8e-13 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 195 8.1e-13 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 195 8.2e-13 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 193 1.4e-12 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 193 1.4e-12 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 192 1.9e-12 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 191 2.2e-12 1
WARNING: Descriptions of 1066 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 988 (352.9 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 178/264 (67%), Positives = 226/264 (85%)
Query: 83 EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN 142
E+E+EKK+H ELLALPPHGSEVY+GGIP DA+E DL+ FC SIGEVTEVRIM+ KDS +
Sbjct: 73 EEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDG 132
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVV 202
KG+AFVTFR+ +LA++AID LNNT+F+GK+I+CST+QAK+RLF+GN+PRNW D++K
Sbjct: 133 KGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAA 192
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
+ +GPGV VEL K+ +N NRGFAFIEY+NH CAEYS+QKM+NP+FKL NAPTVSWA
Sbjct: 193 NRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWA 252
Query: 263 DPRNVDS--SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320
+ R+ S ASQVKA+Y+KNLPR++TQ++LK LFEHHG+I KVV+PPAKPG+E +R G
Sbjct: 253 ESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYG 312
Query: 321 FVHFAERSSAMKALKNTEKYELDG 344
FVH+AER+S M+ALKNTE+YE+DG
Sbjct: 313 FVHYAERTSVMRALKNTERYEIDG 336
Score = 56 (24.8 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDNDP 35
M R +AS A + +E S+E+VD D DNDP
Sbjct: 1 MSRTRTAASEAHDSME------SEERVDLDGDNDP 29
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 156/275 (56%), Positives = 215/275 (78%)
Query: 72 ADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV 131
AD + I+DED ++K++ LL+LPPHGSEV+IGG+P D E DLRD C+ IGE+ EV
Sbjct: 87 ADDDEKPPSPIDDED-REKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEV 145
Query: 132 RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPR 191
R+MK +DS ++KG+AFV F+ ++A KAI++L++ EFKGK IRCS S+ K RLFIGNIP+
Sbjct: 146 RLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPK 205
Query: 192 NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251
NW ++ +KV+ +VGPGV +EL+KD N++ NRGFAF+ Y+N+ CA+YSRQKM + NFK
Sbjct: 206 NWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFK 265
Query: 252 LGTNAPTVSWADPRNVD--SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP 309
L NAPTV+WADP++ S+ A+QVKA+YVKN+P N + +QLK+LF+ HG +TK+V PP
Sbjct: 266 LEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPP 325
Query: 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
K G K GFVH+AERSSA+KA+K+TE+YE++G
Sbjct: 326 GKGG--KRDFGFVHYAERSSALKAVKDTERYEVNG 358
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 387 (141.3 bits), Expect = 8.0e-36, P = 8.0e-36
Identities = 85/251 (33%), Positives = 140/251 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 390 EMNGKDLEGEN 400
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 85/251 (33%), Positives = 140/251 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 300 EMNGKDLEGEN 310
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 85/251 (33%), Positives = 140/251 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 300 EMNGKDLEGEN 310
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 390 (142.3 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 89/253 (35%), Positives = 140/253 (55%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+E+++G IP D E +L + G + ++R+M S N+G+AF+TF E
Sbjct: 220 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 279
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 280 AQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 339
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D +
Sbjct: 340 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 399
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL +VT++ L+K F G + +V ++ FVHF +R A+KA
Sbjct: 400 KVKVLFVRNLANSVTEEILEKAFGQFGNLERV--------KKLKDYAFVHFNDRDGAVKA 451
Query: 334 LKNTEKYELDGDH 346
L EL+G+H
Sbjct: 452 LTEMNGKELEGEH 464
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 387 (141.3 bits), Expect = 2.1e-35, P = 2.1e-35
Identities = 85/251 (33%), Positives = 140/251 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 157 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 216
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 217 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 276
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 277 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 336
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 337 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 388
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 389 EMNGKDLEGEN 399
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 387 (141.3 bits), Expect = 2.1e-35, P = 2.1e-35
Identities = 85/251 (33%), Positives = 140/251 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 390 EMNGKDLEGEN 400
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 387 (141.3 bits), Expect = 2.2e-35, P = 2.2e-35
Identities = 85/251 (33%), Positives = 140/251 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 222 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 281
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 341
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 342 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 393
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 394 EMNGKDLEGEN 404
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 387 (141.3 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 85/251 (33%), Positives = 140/251 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 352
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 353 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 404
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 405 EMNGKDLEGEN 415
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 386 (140.9 bits), Expect = 2.7e-35, P = 2.7e-35
Identities = 85/251 (33%), Positives = 140/251 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 390 EMNGKDLEGEN 400
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 83/250 (33%), Positives = 139/250 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 309
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 310 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 361
Query: 336 NTEKYELDGD 345
E++G+
Sbjct: 362 EMNGKEIEGE 371
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 378 (138.1 bits), Expect = 1.6e-34, P = 1.6e-34
Identities = 89/253 (35%), Positives = 138/253 (54%)
Query: 96 ALPPH-GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQ 107
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
+ + + NRGFAF+EY NH+ A +R+K+ +L + V WA+P VD
Sbjct: 168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
S VK +YV+NL + +++ ++K F + + P A +K R FVHF R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAV 280
Query: 332 KALKNTEKYELDG 344
+A+K LDG
Sbjct: 281 EAMKALNGKVLDG 293
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 378 (138.1 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 83/250 (33%), Positives = 139/250 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGD 345
E++G+
Sbjct: 393 EMNGKEIEGE 402
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 381 (139.2 bits), Expect = 1.8e-34, P = 1.8e-34
Identities = 81/248 (32%), Positives = 143/248 (57%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV-DSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 335 KNTEKYEL 342
+ E+
Sbjct: 391 RGLNGKEI 398
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 379 (138.5 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 82/250 (32%), Positives = 140/250 (56%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF + + A
Sbjct: 189 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 248
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +N E + GK + S A RLF+G+IP+N E++ + ++V G+ V L
Sbjct: 249 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYH 308
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 309 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 368
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 369 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 420
Query: 336 NTEKYELDGD 345
E++G+
Sbjct: 421 EMNGKEIEGE 430
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 378 (138.1 bits), Expect = 2.3e-34, P = 2.3e-34
Identities = 83/250 (33%), Positives = 139/250 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGD 345
E++G+
Sbjct: 393 EMNGKEIEGE 402
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 378 (138.1 bits), Expect = 2.3e-34, P = 2.3e-34
Identities = 83/250 (33%), Positives = 139/250 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGD 345
E++G+
Sbjct: 393 EMNGKEIEGE 402
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 378 (138.1 bits), Expect = 2.3e-34, P = 2.3e-34
Identities = 83/250 (33%), Positives = 139/250 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGD 345
E++G+
Sbjct: 393 EMNGKEIEGE 402
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 378 (138.1 bits), Expect = 2.3e-34, P = 2.3e-34
Identities = 83/250 (33%), Positives = 139/250 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGD 345
E++G+
Sbjct: 393 EMNGKEIEGE 402
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 378 (138.1 bits), Expect = 2.3e-34, P = 2.3e-34
Identities = 83/250 (33%), Positives = 139/250 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGD 345
E++G+
Sbjct: 393 EMNGKEIEGE 402
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 373 (136.4 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 88/253 (34%), Positives = 138/253 (54%)
Query: 96 ALPPH-GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQ 107
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
+ + + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
S VK +YV+NL + +++ ++K F + + P A +K R FVHF R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAV 280
Query: 332 KALKNTEKYELDG 344
+A+K LDG
Sbjct: 281 EAMKALNGKVLDG 293
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 374 (136.7 bits), Expect = 2.7e-34, P = 2.7e-34
Identities = 84/250 (33%), Positives = 136/250 (54%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF E A
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ NN E + GK I S A RLF+G+IP++ + + + ++V G+ V L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+ Y +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 279 QPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KAL
Sbjct: 339 KVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALA 390
Query: 336 NTEKYELDGD 345
+L+G+
Sbjct: 391 ELHGKDLEGE 400
>TAIR|locus:2146564 [details] [associations]
symbol:AT5G28390 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530379 RefSeq:NP_198191.2 UniGene:At.49421
ProteinModelPortal:F4K739 SMR:F4K739 EnsemblPlants:AT5G28390.1
GeneID:832924 KEGG:ath:AT5G28390 PhylomeDB:F4K739 Uniprot:F4K739
Length = 180
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 68/101 (67%), Positives = 87/101 (86%)
Query: 245 MTNPNFKLGTNAPTVSWADPRN--VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
M+NP+FKL NAPTVSWA+ R+ S ASQVKA+Y+KNLPR++TQ++LK LFEHHG+I
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343
KVV+PPAKPG+E +R GFVH+AER+S M+ALKNTE+YE+D
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEID 101
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 371 (135.7 bits), Expect = 9.0e-34, P = 9.0e-34
Identities = 88/253 (34%), Positives = 138/253 (54%)
Query: 96 ALPPH-GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 42 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKV 100
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 101 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 160
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
+ + + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD
Sbjct: 161 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 220
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
S VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A+
Sbjct: 221 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 273
Query: 332 KALKNTEKYELDG 344
+A+K LDG
Sbjct: 274 EAMKALNGKVLDG 286
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 371 (135.7 bits), Expect = 9.8e-34, P = 9.8e-34
Identities = 88/253 (34%), Positives = 138/253 (54%)
Query: 96 ALPPH-GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKV 107
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
+ + + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
S VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 280
Query: 332 KALKNTEKYELDG 344
+A+K LDG
Sbjct: 281 EAMKALNGKVLDG 293
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 367 (134.2 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 86/249 (34%), Positives = 136/249 (54%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAR 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL + T++ ++K F + I + V K ++ FVHF +R A+ A+K
Sbjct: 231 KILYVRNLMLSTTEETIEKEFNN---IKQGAVERVKKIRD---YAFVHFNKREDAVHAMK 284
Query: 336 NTEKYELDG 344
LDG
Sbjct: 285 ALNGKVLDG 293
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 370 (135.3 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 88/253 (34%), Positives = 139/253 (54%)
Query: 96 ALPPH-GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNRQ 107
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 108 EAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVI 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
+ + + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD
Sbjct: 168 VYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
S VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 280
Query: 332 KALKNTEKYELDG 344
+A+K LDG
Sbjct: 281 EAMKALNGKMLDG 293
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 370 (135.3 bits), Expect = 1.3e-33, P = 1.3e-33
Identities = 86/249 (34%), Positives = 134/249 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTQKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T+D +KK+F G+ V K ++ FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKVF---GQFNPGCVERVKKIRD---YAFVHFTTREDAIHAMN 299
Query: 336 NTEKYELDG 344
N EL+G
Sbjct: 300 NLNGVELEG 308
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 369 (135.0 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 88/253 (34%), Positives = 138/253 (54%)
Query: 96 ALPPH-GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKL 107
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
+ + + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
S VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 280
Query: 332 KALKNTEKYELDG 344
+A+K LDG
Sbjct: 281 EAMKALNGKVLDG 293
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 370 (135.3 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 82/239 (34%), Positives = 132/239 (55%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+K +
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKVI 388
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 368 (134.6 bits), Expect = 2.1e-33, P = 2.1e-33
Identities = 85/250 (34%), Positives = 136/250 (54%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDG 344
K LDG
Sbjct: 284 KALNGKVLDG 293
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 367 (134.2 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 85/250 (34%), Positives = 136/250 (54%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDG 344
K LDG
Sbjct: 284 KALNGKVLDG 293
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 367 (134.2 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 85/250 (34%), Positives = 136/250 (54%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDG 344
K LDG
Sbjct: 284 KALNGKVLDG 293
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 365 (133.5 bits), Expect = 4.6e-33, P = 4.6e-33
Identities = 80/245 (32%), Positives = 136/245 (55%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E +L + G + ++R+M S +N+G+AF+TF E A +A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 341 ELDGD 345
E++G+
Sbjct: 360 EIEGE 364
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 85/251 (33%), Positives = 135/251 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G + E R+M + S EN+G+AFV + E A
Sbjct: 41 PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQ 99
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+AI L+N E + GK I S RLFIG+IP++ E++Q+ + +V GV V +
Sbjct: 100 RAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYP 159
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGFAF+EY +HK A +R+K+ F+L + V WA+P + +D +V
Sbjct: 160 SAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRV 219
Query: 276 KAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ +YV+NL + T++ L+ F G + +V ++ F+HF R A+ A
Sbjct: 220 RVLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTA 271
Query: 334 LKNTEKYELDG 344
L++ +DG
Sbjct: 272 LESMNGKVIDG 282
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 84/249 (33%), Positives = 133/249 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T+D +KK F G+ V K ++ FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDG 344
N EL+G
Sbjct: 300 NLNGTELEG 308
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 360 (131.8 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 84/249 (33%), Positives = 135/249 (54%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G E+++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTQKHEAK 136
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + +S RLFIG IP+ E++ + VS+V GV V +
Sbjct: 137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 256
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL +++ L++ F G+ V K ++ FVHFA R A+ A+
Sbjct: 257 KILYVRNLMIETSEEILRQTF---GQFNPGCVERVKKIRD---YAFVHFASRDDAVVAMD 310
Query: 336 NTEKYELDG 344
N E++G
Sbjct: 311 NLNGTEIEG 319
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 359 (131.4 bits), Expect = 2.1e-32, P = 2.1e-32
Identities = 85/249 (34%), Positives = 134/249 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T+D +KK F G+ V K ++ FVHFA R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVHAMN 299
Query: 336 NTEKYELDG 344
N EL+G
Sbjct: 300 NLNGTELEG 308
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 359 (131.4 bits), Expect = 2.1e-32, P = 2.1e-32
Identities = 85/249 (34%), Positives = 134/249 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T+D +KK F G+ V K ++ FVHFA R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVHAMN 299
Query: 336 NTEKYELDG 344
N EL+G
Sbjct: 300 NLNGTELEG 308
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 89/249 (35%), Positives = 132/249 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP + E +L + G++ E+R+M + S EN+GFAFV + E A
Sbjct: 57 PPRGCEVFVGKIPRNIYEDELVPLFERAGKIYELRLMM-EFSGENRGFAFVMYTTKEDAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + G+ I S RLFIG IPR E++ K + + GV V +
Sbjct: 116 LAIKILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
D + + NRGFAF+EY +H+ A +R+++ F+L A V WA P + VD+ +V
Sbjct: 176 DATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVDAETMRRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL + T+D +K F + VV K ++ FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEDTIKAEFN---KFKPRVVERVKKLRD---YAFVHFYNREDAVAAMS 289
Query: 336 NTEKYELDG 344
+DG
Sbjct: 290 IMNGKCIDG 298
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 357 (130.7 bits), Expect = 3.5e-32, P = 3.5e-32
Identities = 85/249 (34%), Positives = 135/249 (54%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFVT+ + A
Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVTYCHKGEAK 127
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 247
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T+D +KK F G+ V K ++ FVHFA R A+ A+
Sbjct: 248 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVLAMN 301
Query: 336 NTEKYELDG 344
+ EL+G
Sbjct: 302 SLNGTELEG 310
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 357 (130.7 bits), Expect = 3.5e-32, P = 3.5e-32
Identities = 85/249 (34%), Positives = 135/249 (54%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFVT+ + A
Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVTYCHKGEAK 127
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 247
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T+D +KK F G+ V K ++ FVHFA R A+ A+
Sbjct: 248 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVLAMN 301
Query: 336 NTEKYELDG 344
+ EL+G
Sbjct: 302 SLNGTELEG 310
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 355 (130.0 bits), Expect = 3.9e-32, P = 3.9e-32
Identities = 84/249 (33%), Positives = 133/249 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 29 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAK 87
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 88 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 147
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 148 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 207
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T+D +KK F G+ V K ++ FVHF R A+ A+
Sbjct: 208 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 261
Query: 336 NTEKYELDG 344
N EL+G
Sbjct: 262 NLNGTELEG 270
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 355 (130.0 bits), Expect = 5.9e-32, P = 5.9e-32
Identities = 84/249 (33%), Positives = 133/249 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T+D +KK F G+ V K ++ FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDG 344
N EL+G
Sbjct: 300 NLNGTELEG 308
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 351 (128.6 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 82/250 (32%), Positives = 132/250 (52%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P GSE+++G +P D E +L C+ G++ EVR+M + + N+G+AFVTF + A
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSTKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY H+ A +R+K+ +L + V WA+P VD + V
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMATV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL T++ ++K F + P A +K R FVHF++R A+ A+
Sbjct: 231 KILYVRNLMLPTTEETIEKEFNS-------IKPGAVERVKKIRDYAFVHFSQREDAINAM 283
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 284 NALNGKVIDG 293
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 89/250 (35%), Positives = 129/250 (51%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 89/250 (35%), Positives = 129/250 (51%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 89/250 (35%), Positives = 129/250 (51%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 345 (126.5 bits), Expect = 4.0e-31, P = 4.0e-31
Identities = 89/250 (35%), Positives = 129/250 (51%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 345 (126.5 bits), Expect = 4.0e-31, P = 4.0e-31
Identities = 89/250 (35%), Positives = 129/250 (51%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 345 (126.5 bits), Expect = 4.0e-31, P = 4.0e-31
Identities = 89/250 (35%), Positives = 129/250 (51%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 345 (126.5 bits), Expect = 4.0e-31, P = 4.0e-31
Identities = 89/250 (35%), Positives = 129/250 (51%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFSKFK-------PGAVERVKKLRDYAFVHFFHREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 345 (126.5 bits), Expect = 4.0e-31, P = 4.0e-31
Identities = 89/250 (35%), Positives = 129/250 (51%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 344 (126.2 bits), Expect = 5.1e-31, P = 5.1e-31
Identities = 87/251 (34%), Positives = 130/251 (51%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL + T++ +K F G + +V ++ FVHF R A+ A
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGSVERV--------KKLRDYAFVHFFNREDAVAA 287
Query: 334 LKNTEKYELDG 344
+ +DG
Sbjct: 288 MSVMNGKCIDG 298
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 345 (126.5 bits), Expect = 7.5e-31, P = 7.5e-31
Identities = 82/249 (32%), Positives = 132/249 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T++ +KK F G+ V K ++ FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEETIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDG 344
N EL+G
Sbjct: 300 NLNGTELEG 308
>TAIR|locus:2042366 [details] [associations]
symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
Uniprot:Q8RWQ1
Length = 809
Score = 328 (120.5 bits), Expect = 8.9e-31, Sum P(2) = 8.9e-31
Identities = 74/247 (29%), Positives = 132/247 (53%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++G + ASE DL+ +GEVTEVRI+K + ++KG AF+ F VE A +A+ +
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L + GKK + SQ LF+GNI + W E L++ + G + + LV+D N
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNV 334
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADP-RNVDSSGASQVKAVY 279
+ NRG+AF+E+ + A + +++ + G P VS+ D +++ +QVK ++
Sbjct: 335 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIF 394
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ L + +++++ L + +G++ KV + P + GFV F +A+ K
Sbjct: 395 IDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINN 454
Query: 340 YEL-DGD 345
EL +G+
Sbjct: 455 SELGEGE 461
Score = 46 (21.3 bits), Expect = 8.9e-31, Sum P(2) = 8.9e-31
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 16 ELEKPV---GSDEKVDFDEDNDP 35
E+E+ V G DE++D D DN+P
Sbjct: 97 EVEESVDDFGKDERLDLD-DNEP 118
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 342 (125.4 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 81/249 (32%), Positives = 132/249 (53%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL T++ +K+ F G+ V K ++ FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEETIKRSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDG 344
N EL+G
Sbjct: 300 NLNGTELEG 308
>DICTYBASE|DDB_G0282293 [details] [associations]
symbol:rnpA "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0282293 GO:GO:0000166
EMBL:AAFI02000047 GenomeReviews:CM000152_GR Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AY392444 RefSeq:XP_640243.1
ProteinModelPortal:Q6TMI9 EnsemblProtists:DDB0214833 GeneID:8623503
KEGG:ddi:DDB_G0282293 InParanoid:Q6TMI9 OMA:LTVNWSD Uniprot:Q6TMI9
Length = 551
Score = 318 (117.0 bits), Expect = 5.3e-28, P = 5.3e-28
Identities = 69/199 (34%), Positives = 107/199 (53%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQ--SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+E++ GG+ +E +L + S V E+R+MK K + E+KGF FV F + +
Sbjct: 92 NEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRNV 151
Query: 160 IDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
IDKLN KGK I S+ K +LFIGN+P++ E + +E G+ ++ +
Sbjct: 152 IDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSPD 211
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT--NAPTVSWADP--RNVDSSGA--- 272
+ NRGFAFIEY +H A+ +R+ +T KLG TV+W+DP +D
Sbjct: 212 QPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPLE 271
Query: 273 -SQVKAVYVKNLPRNVTQD 290
++KA+Y++NLP N D
Sbjct: 272 NKEIKAIYIRNLPLNHRND 290
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 81/232 (34%), Positives = 121/232 (52%)
Query: 115 EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKI 173
E +L + G++ E+R+M + S EN+GFAFV + E A AI LNN E + G+ I
Sbjct: 3 EDELVPLFERAGKIYELRLMM-EFSGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFI 61
Query: 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYH 233
S RLFIG IPR E++ K + + GV V + D + + NRGFAF+EY
Sbjct: 62 GVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYE 121
Query: 234 NHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQL 292
+H+ A +R+++ F+L A V WA P + VD+ +VK +YV+NL + T+D +
Sbjct: 122 SHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTI 181
Query: 293 KKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
K F + VV K ++ FVHF R A+ A+ +DG
Sbjct: 182 KAEFN---KFKPRVVERVKKLRD---YAFVHFYNREDAVAAMSIMNGKCIDG 227
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 308 (113.5 bits), Expect = 9.8e-27, P = 9.8e-27
Identities = 75/248 (30%), Positives = 129/248 (52%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G E+Y+G IP D E L + G++ ++R+M S ++G+AFVT+ N E A+ A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+ E GK ++ + S A RLFIGNIP+ +++ + + GV V +
Sbjct: 259 KTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVPD 318
Query: 220 NSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNV-DSSGASQVK 276
N NRGF F+++ +HK A ++K+ + NA V WA+ + D S+VK
Sbjct: 319 NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIR-PFNADVYVDWAEHQEEPDEDTMSKVK 377
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+Y++N+ VT+++L +LF+ + + +V ++ F+HF ER +KA++
Sbjct: 378 VLYIRNIKEAVTEEKLNELFKEYASLDRV--------KKVKDYAFIHFNERDDCLKAMEE 429
Query: 337 TEKYELDG 344
EL+G
Sbjct: 430 WNGKELEG 437
>UNIPROTKB|Q5T0W7 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
Uniprot:Q5T0W7
Length = 201
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 57/152 (37%), Positives = 89/152 (58%)
Query: 96 ALPPH-GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKV 107
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245
+ + + NRGFAF+EY +H+ A +R+K+
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKL 199
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 265 (98.3 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 59/177 (33%), Positives = 97/177 (54%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK + S A RLF+G+IP+N E++ + S+V G+ V L + NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 133
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+NL VT
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVT 193
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345
++ L+K F G++ +V ++ FVHF +R +A+KA+ E++G+
Sbjct: 194 EEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 242
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 251 (93.4 bits), Expect = 5.5e-21, P = 5.5e-21
Identities = 71/239 (29%), Positives = 117/239 (48%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+ D E +L + G V +R+M +N+G+AF+TF E A + ++ E
Sbjct: 1 VQRDLYEDELVPLFEKAGPVWSLRLMMDP-LGQNRGYAFITFCGKEAAQGLVKPCDSCEI 59
Query: 169 K-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
+ GK + S A F+G P+N E+ ++ S+V G+ G+ L + N GF
Sbjct: 60 RPGKVLGVCFSVAN-NTFVGFTPKNKTKENFEEF-SKVTEGLVGIILDHQPDDKKKNWGF 117
Query: 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRN 286
F+EY +HK A +R + + G N TV ADP D G ++VK ++V+NL
Sbjct: 118 CFLEYEDHKSAAQARLWLMSGKVVWG-NVVTVERADPVEEPDPEGMAKVKVLFVRNLATT 176
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345
VT++ L+K F G + +V ++ FVHF +R A+KA+ E++G+
Sbjct: 177 VTEEILEKSFSQFGELERV--------KKLTDYAFVHFEDRE-AVKAVDEMNGKEIEGE 226
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 52/149 (34%), Positives = 87/149 (58%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245
+ NRGFAF+EY +H+ A +R+K+
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKL 214
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 229 (85.7 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 68/249 (27%), Positives = 116/249 (46%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P S +Y+G + + SE L + +G V+ +R+ + ++ + +A+V + N A +
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D LNNT +GK R SQ L FI N+ + + L S G +
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-NIL 125
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++V D NSS +GF F+ Y + A+ + K+ + N V ++
Sbjct: 126 SCKVVTDDGNSS--KGFGFVHYETQESADKAIAKVNG----MMINGQKVFVGPFKSSKER 179
Query: 271 GA-SQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
G ++VK V+ KNL +V DQLK+L + +G IT + + G+ K GF +F
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKG-FGFANFESA 238
Query: 328 SSAMKALKN 336
+A ++N
Sbjct: 239 EAAKNVVEN 247
Score = 185 (70.2 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 59/246 (23%), Positives = 110/246 (44%)
Query: 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167
GI H A L D + G + +++ D + +KGF FV + E A KAI K+N
Sbjct: 108 GIDHKA----LYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMM 162
Query: 168 FKGKKI----------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
G+K+ R ++ K+ +F N+ + G + L++++ + G +T + ++
Sbjct: 163 INGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE-ITNITIMA 221
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA---- 272
D K S GFA N + AE ++ + N N K+ P + + ++
Sbjct: 222 DDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHT 276
Query: 273 --SQVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
++ + V Y+KN+ ++ D+L+++F G IT +V GFV +
Sbjct: 277 FETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPD 336
Query: 329 SAMKAL 334
A +A+
Sbjct: 337 EATRAV 342
Score = 129 (50.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 40/163 (24%), Positives = 75/163 (46%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L ++ ++VG V+ + + +D N+ + +A++ Y+N AE +
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGL-VSNIRVCRDT-NTRRSLSYAYVNYYNGADAERALD 69
Query: 244 KMTNPNFKLGTNAPTVSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301
+ N + G A + W+ DP ++ SG V ++KNL + + L F G
Sbjct: 70 TLNNTPIR-G-KACRIMWSQRDP-SLRKSGVGNV---FIKNLDKGIDHKALYDTFSAFGN 123
Query: 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
I V G GFVH+ + SA KA+ ++G
Sbjct: 124 ILSCKVV-TDDGNSSKGFGFVHYETQESADKAIAKVNGMMING 165
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 226 (84.6 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 69/253 (27%), Positives = 120/253 (47%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G V VR+ + + + G+ +V F N + A++AI
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 162 KLNNTEFKGKKIRCSTSQA--KYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN GK IR S R +FI N+ + + L S G + +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSCK 154
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D +S ++G+ F++Y N + A+ + +K+ L V R S A+
Sbjct: 155 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLLNDKQVYVGPFLRRQERDSTAN 210
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
+ K VYVKNL + T D LK F +G+IT VV K G+ K++ GFV+F A
Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENADDA 268
Query: 331 MKALKNTEKYELD 343
+A+++ ++ D
Sbjct: 269 ARAVESLNGHKFD 281
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 221 (82.9 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 68/251 (27%), Positives = 121/251 (48%)
Query: 102 SEVYIGGIPHDASEHDL-RDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
+ +Y+G + D +E L R F ++G V +RI + + + + G+A+V F + A KA+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKF-STVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKAL 68
Query: 161 DKLNNTEFKGKKIRCSTSQAK-Y--RLFIGNI-PRNWGSEDLQKVVSEVGPGVTGVELVK 216
D +N KGK IR SQ Y R IGN+ +N K + E + K
Sbjct: 69 DTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSK 128
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---SGAS 273
M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S AS
Sbjct: 129 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRSKAS 187
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ VY+KN ++ ++LK +F +G+ V V G+ K GFV F +A KA
Sbjct: 188 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKA 246
Query: 334 LKNTEKYELDG 344
++ +++G
Sbjct: 247 VEEMNGRDING 257
Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + + VYI D + L+D G+ V++M S ++KG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKG 231
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F + E A KA++++N + G+ I +Q K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 221 (82.9 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 68/251 (27%), Positives = 121/251 (48%)
Query: 102 SEVYIGGIPHDASEHDL-RDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
+ +Y+G + D +E L R F ++G V +RI + + + + G+A+V F + A KA+
Sbjct: 68 ASLYVGDLHADVTEDLLFRKF-STVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKAL 126
Query: 161 DKLNNTEFKGKKIRCSTSQAK-Y--RLFIGNI-PRNWGSEDLQKVVSEVGPGVTGVELVK 216
D +N KGK IR SQ Y R IGN+ +N K + E + K
Sbjct: 127 DTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSK 186
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---SGAS 273
M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S AS
Sbjct: 187 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRSKAS 245
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ VY+KN ++ ++LK +F +G+ V V G+ K GFV F +A KA
Sbjct: 246 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKA 304
Query: 334 LKNTEKYELDG 344
++ +++G
Sbjct: 305 VEEMNGRDING 315
Score = 127 (49.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + + VYI D + L+D G+ V++M S ++KG
Sbjct: 231 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKG 289
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F + E A KA++++N + G+ I +Q K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 326
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 222 (83.2 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 60/252 (23%), Positives = 124/252 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + ++G V+ +R+ + + ++ G+A+V + N+ A +A+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T KG+ R S L F+ N+ ++ ++ L S G + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D S + GF + Y + + A+ + +K+ +LG+ V ++ ++ +
Sbjct: 135 VATDEFGKSKSYGF--VHYEDEESAKEAIEKVNG--VQLGSKNVYVGPFIKKSERATNDT 190
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ +YVKN P +VT+ L++LF +G IT ++V K + + F+++A+ SA A
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIV---KMDNKNRKFCFINYADAESAKNA 247
Query: 334 LKNTEKYELDGD 345
+ N ++ D
Sbjct: 248 MDNLNGKKITDD 259
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 222 (83.2 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 60/252 (23%), Positives = 124/252 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + ++G V+ +R+ + + ++ G+A+V + N+ A +A+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T KG+ R S L F+ N+ ++ ++ L S G + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D S + GF + Y + + A+ + +K+ +LG+ V ++ ++ +
Sbjct: 135 VATDEFGKSKSYGF--VHYEDEESAKEAIEKVNG--VQLGSKNVYVGPFIKKSERATNDT 190
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ +YVKN P +VT+ L++LF +G IT ++V K + + F+++A+ SA A
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIV---KMDNKNRKFCFINYADAESAKNA 247
Query: 334 LKNTEKYELDGD 345
+ N ++ D
Sbjct: 248 MDNLNGKKITDD 259
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 220 (82.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 69/258 (26%), Positives = 127/258 (49%)
Query: 100 HGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
HG+ +Y+G + + ++ L D+ + +V VR+ + ++ + G+ +V + N + A
Sbjct: 42 HGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAE 101
Query: 158 KAIDKLNNTEFKGKKIRCS----TSQAKY----RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+ KLN + GK IR + S A+ LF+ N+ ++ ++ L + S G +
Sbjct: 102 KAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-I 160
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD- 268
++ D S RG+ F+++ A+ + +K+ N K+ + R +
Sbjct: 161 VSCKVATDHMGQS--RGYGFVQFDTEDSAKNAIEKL---NGKVLNDKQIFVGPFLRKEER 215
Query: 269 SSGASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFA 325
S A ++K VYVKNL T D+LK F +G I+ VV + G K+R GFV+F
Sbjct: 216 ESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFE 273
Query: 326 ERSSAMKALK--NTEKYE 341
A +A++ N +K++
Sbjct: 274 NPEDAARAVEALNGKKFD 291
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 198 (74.8 bits), Expect = 9.7e-16, P = 9.7e-16
Identities = 63/244 (25%), Positives = 112/244 (45%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +RI + +S + +A+V F++ + A A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L F+ N+ ++ ++ L VS G +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D +N S +G+ F+ + H+ AE + +KM N G + + ++ +
Sbjct: 130 VVCD-ENGS--KGYGFVHFETHEAAERAIKKM-NGMLLNGRKVFVGQFKSRKEREAELGA 185
Query: 274 QVKA---VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+ K VY+KN ++ ++LK LF G V V + G+ K GFV F A
Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 331 MKAL 334
KA+
Sbjct: 245 QKAV 248
Score = 120 (47.3 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTE 167
F FV+F E A KA+D++N E
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKE 255
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 40/164 (24%), Positives = 76/164 (46%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L + S GP + + + +D+ S ++ +A++ + + K AE++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
M NF + P + W+ DP ++ SG + +VKNL +++ L G
Sbjct: 71 TM---NFDVIKGKPVRIMWSQRDP-SLRKSGVGNI---FVKNLDKSINNKALYDTVSAFG 123
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
I V + G + GFVHF +A +A+K L+G
Sbjct: 124 NILSCNVVCDENGSKG--YGFVHFETHEAAERAIKKMNGMLLNG 165
Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
Identities = 35/156 (22%), Positives = 73/156 (46%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++ + + L D + G + ++ D + +KG+ FV F E A +AI K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVC--DENGSKGYGFVHFETHEAAERAIKKM 158
Query: 164 NNT----------EFKGKKIRCSTSQAKYR----LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +FK +K R + A+ + ++I N + E L+ + + GP +
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245
+ V+++ D S ++GF F+ + H+ A+ + +M
Sbjct: 219 S-VKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM 251
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 216 (81.1 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 69/283 (24%), Positives = 129/283 (45%)
Query: 72 ADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV 131
A A + D E++ E AE + + +Y+G + +E L + IG+V+ +
Sbjct: 28 AAATTTADQSAEEQGESSGVAE------NSASLYVGELNPSVNEATLFEIFSPIGQVSSI 81
Query: 132 RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ----AKY----R 183
R+ + S ++ G+A+V + E KAI++LN +G+ R SQ A+
Sbjct: 82 RVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGN 141
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
+FI N+ ++ L S G + ++ D S + F F+ Y + AE + +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGK-ILSCKVATDEFGQS--KCFGFVHYETAEAAEAAIE 198
Query: 244 KMTNP--NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301
+ N + +S D + + +YVKN+ N +++ +KLF G+
Sbjct: 199 NVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK 258
Query: 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
IT + + + G+ K GFV+F + SA+KA++ E++G
Sbjct: 259 ITSIYLEKDQDGKSKG-FGFVNFEDHESAVKAVEELNDKEING 300
Score = 136 (52.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 35/125 (28%), Positives = 64/125 (51%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ I + SE G++T + + K +D +
Sbjct: 216 ISKKDRESKFEEMKA---NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDG-K 271
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKV 201
+KGF FV F + E A KA+++LN+ E G+KI +Q K R + + + + + L+K+
Sbjct: 272 SKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKK-RERLEELKKQYEAVRLEKL 330
Query: 202 VSEVG 206
G
Sbjct: 331 AKYQG 335
Score = 117 (46.2 bits), Expect = 0.00063, P = 0.00063
Identities = 42/189 (22%), Positives = 81/189 (42%)
Query: 169 KGKKIRCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
K ++ + +A + +++ NI N+ E +K+ S G +T + L KD S +GF
Sbjct: 219 KDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-ITSIYLEKDQDGKS--KGF 275
Query: 228 AFIEYHNHKCA-----EYSRQKMTNPNFKLGTNAPTVSWADPRN-------VDSSGASQV 275
F+ + +H+ A E + +++ +G + ++ Q
Sbjct: 276 GFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQG 335
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
++VKNL + ++L++ F+ G IT V + G+ K GFV F A KA+
Sbjct: 336 VNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKG-FGFVCFTTPEEATKAIT 394
Query: 336 NTEKYELDG 344
++G
Sbjct: 395 EMNTRMING 403
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 208 (78.3 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 66/254 (25%), Positives = 116/254 (45%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +RI + +S + +A+V F++ + A A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L F+ N+ ++ ++ L VS G +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D +N S +G+ F+ + H+ AE + +KM N G + + ++ +
Sbjct: 130 VVCD-ENGS--KGYGFVHFETHEAAERAIKKM-NGMLLNGRKVFVGQFKSRKEREAELGA 185
Query: 274 QVKA---VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+ K VY+KN ++ ++LK LF G V V + G+ K GFV F A
Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 331 MKALKNTEKYELDG 344
KA+ EL+G
Sbjct: 245 QKAVDEMNGKELNG 258
Score = 142 (55.0 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 210 (79.0 bits), Expect = 9.4e-15, P = 9.4e-15
Identities = 70/288 (24%), Positives = 127/288 (44%)
Query: 71 DADAGKSGDMQIEDEDEKKKH-AELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT 129
D A + ++ I+D+ ++ +E ++ + +Y+G + SE L D IG V+
Sbjct: 6 DKTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVS 65
Query: 130 EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AK 181
+R+ + + + G+A+V F + E KAI++LN T KG+ R SQ
Sbjct: 66 SIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGS 125
Query: 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
+FI N+ + ++ L S G + ++ D S +GF F+ + A+ +
Sbjct: 126 GNIFIKNLHPDIDNKALYDTFSVFGD-ILSSKIATDENGKS--KGFGFVHFEEEGAAKEA 182
Query: 242 RQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFE 297
+ N G + DS + KA +YVKN+ T +Q ++LF
Sbjct: 183 IDAL-NGMLLNGQEIYVAPHLSRKERDSQ-LEETKAHYTNLYVKNINSETTDEQFQELFA 240
Query: 298 HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345
G I + G+ K GFV++ + A+KA++ EL+G+
Sbjct: 241 KFGPIVSASLEKDADGKLKG-FGFVNYEKHEDAVKAVEALNDSELNGE 287
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 209 (78.6 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 60/254 (23%), Positives = 114/254 (44%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + + +
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVD 268
++ +D S +G+ F+ Y + A + + + N K +S D ++
Sbjct: 158 SCKVAQDEFGVS--KGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 215
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ +Y+KN+ V ++ +KLFE G IT + G+ + GFV+F+
Sbjct: 216 EEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG-FGFVNFSTHE 274
Query: 329 SAMKALKNTEKYEL 342
SA A++ E+
Sbjct: 275 SAQAAVEEMNDKEV 288
Score = 119 (46.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 25/101 (24%), Positives = 52/101 (51%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +YI I + + + R + GE+T + + + +
Sbjct: 206 ISKKDRQSKFEEMKA---NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEG-K 261
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 262 SRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKH 302
Score = 45 (20.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 308 PPAKP-GQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
P KP G+ K GFV F+ A KA+ + ++G
Sbjct: 408 PEKKPLGKSKG-FGFVCFSSPDEASKAVTEMNQRMVNG 444
>UNIPROTKB|E1C0G3 [details] [associations]
symbol:DND1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0060965 "negative
regulation of gene silencing by miRNA" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366 GO:GO:0017091
GO:GO:0060965 EMBL:AADN02063753 IPI:IPI00581277
ProteinModelPortal:E1C0G3 Ensembl:ENSGALT00000009491 OMA:EEIMEEM
Uniprot:E1C0G3
Length = 208
Score = 187 (70.9 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 52/169 (30%), Positives = 79/169 (46%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEVYI +P D E L QS+G++ E R+M S N+GFA+ + + A
Sbjct: 35 PPPGSEVYIAKLPRDLYEDTLIPLFQSVGQLYEFRLML-TFSGLNRGFAYAKYSDQHGAG 93
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KAI LNN E + G+ I S K L + +P +L ++ E G+ G+ L
Sbjct: 94 KAIAALNNWEVQEGRAILVCRSFEKCELSVNGLPATLRRRELDAMLLEATEGLLGLTL-- 151
Query: 217 DMKNSSNNRG-FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
+ +G A + Y +H+ A +++ + N L V W P
Sbjct: 152 -HASPGRKQGKVAVLTYSSHRAAAMAKKALVEGNVGLFKKKVKVEWLKP 199
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 208 (78.3 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 66/254 (25%), Positives = 116/254 (45%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +RI + +S + +A+V F++ + A A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L F+ N+ ++ ++ L VS G +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D +N S +G+ F+ + H+ AE + +KM N G + + ++ +
Sbjct: 130 VVCD-ENGS--KGYGFVHFETHEAAERAIKKM-NGMLLNGRKVFVGQFKSRKEREAELGA 185
Query: 274 QVKA---VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+ K VY+KN ++ ++LK LF G V V + G+ K GFV F A
Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 331 MKALKNTEKYELDG 344
KA+ EL+G
Sbjct: 245 QKAVDEMNGKELNG 258
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00082, P = 0.00082
Identities = 48/184 (26%), Positives = 83/184 (45%)
Query: 167 EFKGKKIRCSTSQAKYR----LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSS 222
+FK +K R + A+ + ++I N + E L+ + + GP ++ V+++ D S
Sbjct: 172 QFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD--ESG 228
Query: 223 NNRGFAFIEYHNHKCAEYSRQKMTNP--NFK---LGTNAPTVSWA-------DPRNVDSS 270
++GF F+ + H+ A+ + +M N K +G V + D
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRI 288
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
QV +YVKNL + ++L+K F G IT V + G+ K GFV F+ A
Sbjct: 289 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM-MEGGRSKG-FGFVCFSSPEEA 346
Query: 331 MKAL 334
KA+
Sbjct: 347 TKAV 350
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 206 (77.6 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 66/254 (25%), Positives = 117/254 (46%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + + G+A V F+ +E A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L F+ N+ R+ S+ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D +N S +G+ F+ + + AE + +KM N F + R+ + +
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEEAERAIEKM-NGMFLNDRKVFVGRFKSRRDRQAELGA 185
Query: 274 QVKA---VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+ K VY+KNL ++ ++L+ LF G V V + G+ K GFV F A
Sbjct: 186 RAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 331 MKALKNTEKYELDG 344
KA+ +L+G
Sbjct: 245 RKAVDEMNGKDLNG 258
Score = 137 (53.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ + + AEL A + VYI + D + L+D G V++M +S ++KG
Sbjct: 174 KSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N + GK+I +Q K
Sbjct: 233 FGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
Score = 80 (33.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 268 DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
D S Q +YVKNL + ++L+K F G IT V + G+ K GFV F+
Sbjct: 296 DRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVT-MEGGRSKG-FGFVCFSSP 353
Query: 328 SSAMKAL 334
A KA+
Sbjct: 354 EEATKAV 360
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 206 (77.6 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 62/261 (23%), Positives = 114/261 (43%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + K N L V P+
Sbjct: 176 LSCKVAQD--ENGNSKGYGFVHYETDEAASQAI-KHVN-GMLLNEKKVYVGHHIPKKDRQ 231
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKN+ VT D+ + LFE +G +T + + + GFV+F
Sbjct: 232 SKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFT 291
Query: 326 ERSSAMKALKNTEKYELDGDH 346
A KA++ + E G +
Sbjct: 292 SHEDASKAVQELNEKEFHGQN 312
Score = 134 (52.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 28/101 (27%), Positives = 56/101 (55%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ I + ++ + R + G+VT + + +++ +
Sbjct: 225 IPKKDRQSKFDEMKA---NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGK 281
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + E ASKA+ +LN EF G+ + +Q K+
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKH 322
Score = 41 (19.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
+N P D K E G +K +K G+ K GFV FA A KA+
Sbjct: 402 ENKPEEKEGDDSKPE-EKEGEDSK---SKSKLGKSKG-FGFVCFANPDDATKAV 450
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 201 (75.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 67/265 (25%), Positives = 126/265 (47%)
Query: 89 KKHAELLALPPHGSE---VYIGGIPHDASEHDLRD-FCQSIGEVTEVRIMKGKDSSENKG 144
K + L H S +Y+G + D +E DL D F ++ V V + + + ++
Sbjct: 5 KTETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNV-PVVSVHLCRNSVTGKSMC 63
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK--YR---------LFIGNIPRNW 193
+A++ F + AS A+ +LN+++ KGK +R SQ YR L++ N+ +
Sbjct: 64 YAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSI 123
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253
S L+++ G + ++V++ + ++GF F+++ + A +R + + + G
Sbjct: 124 TSSCLERMFCPFG-SILSCKVVEE---NGQSKGFGFVQFDTEQSAVSARSAL-HGSMVYG 178
Query: 254 TNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
+ + +G VYVKNL VT D L LF +G ++ VVV +
Sbjct: 179 KKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVV--MRD 236
Query: 313 GQEKNR-IGFVHFAERSSAMKALKN 336
G ++R GFV+F +A KA+++
Sbjct: 237 GMGRSRGFGFVNFCNPENAKKAMES 261
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 201 (75.8 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 68/259 (26%), Positives = 113/259 (43%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + +Y+G + +E L + SIG V +R+ + + + G+A+V F N+E K
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KG+ R SQ L FI N+ ++ L S G ++
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 196
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
V ++ N+ +G+ F+ + + + A + + + L V R S
Sbjct: 197 CKVAVDELGNA---KGYGFVHFDSVESANAAIEHVNG--MLLNDKKVYVGHHVSRRERQS 251
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFA 325
+KA VY+KNL +T+ + LF G IT + + K +K R GFV++A
Sbjct: 252 KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VKDQNDKPRGFGFVNYA 309
Query: 326 ERSSAMKALKNTEKYELDG 344
A KA+ E G
Sbjct: 310 NHECAQKAVDELNDKEYKG 328
Score = 155 (59.6 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 30/95 (31%), Positives = 57/95 (60%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
+++ +++ AL + + VYI + + +E + D GE+T + ++K ++ +GF F
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP-RGFGF 305
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
V + N E A KA+D+LN+ E+KGKK+ +Q K+
Sbjct: 306 VNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKH 340
Score = 126 (49.4 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 47/220 (21%), Positives = 91/220 (41%)
Query: 138 DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY-RLFIGNIPRNWGSE 196
DS E+ A + L K + ++ + ++ + +A + ++I N+ +
Sbjct: 216 DSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQ 275
Query: 197 DLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK----- 251
+ + + G +T + LVKD + RGF F+ Y NH+CA+ + ++ + +K
Sbjct: 276 EFSDLFGQFGE-ITSLSLVKDQNDKP--RGFGFVNYANHECAQKAVDELNDKEYKGKKLY 332
Query: 252 LGT-------NAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK 304
+G + ++ Q +++KNL V ++LK F G IT
Sbjct: 333 VGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITS 392
Query: 305 VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+ + G+ K GFV + A KA+ + L G
Sbjct: 393 AKIMTDEQGKSKG-FGFVCYTTPEEANKAVTEMNQRMLAG 431
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 195 (73.7 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 65/254 (25%), Positives = 119/254 (46%)
Query: 102 SEVYIGGIPHDASEHDL-RDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
+ +Y+G + D +E L R F ++G V +RI + S + G+ +V F V A KA+
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKF-NTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKAL 68
Query: 161 DKLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
+ +N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 69 ETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSS- 127
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN--APTVSWADPRNVDSS 270
K M + ++G+ F+ Y + + A+ + ++M + T A S D
Sbjct: 128 ---KVMTDEEGSKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELRE 184
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
++ VY+KN ++ + L+ +F +G+ V V G+ K R GFV F +A
Sbjct: 185 KPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK-RFGFVSFDSHKAA 243
Query: 331 MKALKNTEKYELDG 344
A+++ +++G
Sbjct: 244 KNAVEDMNGRDING 257
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K + AEL P + VYI D + LR G+ V++MK S ++K
Sbjct: 173 KSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKR 231
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F + + A A++ +N + G+ I +Q K
Sbjct: 232 FGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKK 268
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 200 (75.5 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 69/266 (25%), Positives = 121/266 (45%)
Query: 95 LALPPHGS----EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTF 150
+ PP+ + +YIG + D SE L + G V +R+ + S + G+A+V F
Sbjct: 46 IGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 105
Query: 151 RNVELASKAIDKLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVV 202
+ A +A+D +N G+ +R SQ A R +FI N+ R ++ +
Sbjct: 106 QQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTF 165
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
S G + ++ D + N++G+ F+ + A+ + +K+ L V
Sbjct: 166 SLFG-NILSCKVATD--DEGNSKGYGFVHFETEHSAQTAIEKVNG--MLLSDKKVYVGKF 220
Query: 263 DPR--NVDSSGASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
PR + G S +K V+VKN ++ Q++L +F G IT VV G+ K
Sbjct: 221 QPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKG- 279
Query: 319 IGFVHFAERSSAMKALKNTEKYELDG 344
GFV FA++ +A +A++ L+G
Sbjct: 280 FGFVAFADQDAAGQAVEKLNDSILEG 305
>UNIPROTKB|D6REZ6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 HOGENOM:HOG000112240 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965724
ProteinModelPortal:D6REZ6 SMR:D6REZ6 Ensembl:ENST00000513473
ArrayExpress:D6REZ6 Bgee:D6REZ6 Uniprot:D6REZ6
Length = 193
Score = 177 (67.4 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 40/116 (34%), Positives = 67/116 (57%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDV 181
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 197 (74.4 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 67/255 (26%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+AF+ + + A+ + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 AS--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN V + LK+LF G+ V V G+ K GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA++ E+ G
Sbjct: 244 ANKAVEEMNGKEISG 258
Score = 134 (52.2 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI + + +L++ G+ V++M+ S ++KG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV++ E A+KA++++N E GK I +Q K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 117 (46.2 bits), Expect = 0.00063, P = 0.00063
Identities = 48/183 (26%), Positives = 86/183 (46%)
Query: 168 FKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGVTGVELVKDMKNSSN 223
FK +K R + AK + F +N+G E +L+++ S+ G ++ V++++D S
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLS-VKVMRDP--SGK 229
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVS-WADPRN----VDSSGAS 273
++GF F+ Y H+ A + ++M +G V A+ + + S
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 274 QVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ + V Y+KNL + ++L+K F G IT V + G+ K GFV F+ A
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEAT 347
Query: 332 KAL 334
KA+
Sbjct: 348 KAV 350
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 197 (74.4 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 67/255 (26%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+AF+ + + A+ + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 AS--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN V + LK+LF G+ V V G+ K GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA++ E+ G
Sbjct: 244 ANKAVEEMNGKEISG 258
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI + + L++ G+ V++M+ S ++KG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV++ E A+KA++++N E GK I +Q K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 116 (45.9 bits), Expect = 0.00082, P = 0.00082
Identities = 48/183 (26%), Positives = 85/183 (46%)
Query: 168 FKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGVTGVELVKDMKNSSN 223
FK +K R + AK + F +N+G E L+++ S+ G ++ V++++D S
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS-VKVMRDP--SGK 229
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVS-WADPRN----VDSSGAS 273
++GF F+ Y H+ A + ++M +G V A+ + + S
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 274 QVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ + V Y+KNL + ++L+K F G IT V + G+ K GFV F+ A
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEAT 347
Query: 332 KAL 334
KA+
Sbjct: 348 KAV 350
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 175 (66.7 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+L+ + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 91 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 184
Score = 142 (55.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 37/144 (25%), Positives = 74/144 (51%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAE 239
+ S RG FI + AE
Sbjct: 159 DQVTGIS--RGVGFIRFDKRIEAE 180
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 196 (74.1 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 67/255 (26%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+AF+ + + A+ + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 AS--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN V + LK+LF G+ V V G+ K GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG-FGFVSYEKHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA++ E+ G
Sbjct: 244 ANKAVEEMNGKEISG 258
Score = 129 (50.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI + + L++ G+ V++M+ + ++KG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV++ E A+KA++++N E GK I +Q K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 196 (74.1 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 67/255 (26%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+AF+ + + A+ + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 AS--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN V + LK+LF G+ V V G+ K GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG-FGFVSYEKHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA++ E+ G
Sbjct: 244 ANKAVEEMNGKEISG 258
Score = 129 (50.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI + + L++ G+ V++M+ + ++KG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV++ E A+KA++++N E GK I +Q K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 196 (74.1 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 67/255 (26%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+AF+ + + A+ + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 AS--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN V + LK+LF G+ V V G+ K GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA++ E+ G
Sbjct: 244 ANKAVEEMNGKEITG 258
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI + + +L++ G+ V++M+ S ++KG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV++ E A+KA++++N E GK I +Q K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKK 269
Score = 118 (46.6 bits), Expect = 0.00051, P = 0.00051
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 168 FKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGVTGVELVKDMKNSSN 223
FK +K R + AK + F +N+G E +L+++ S+ G ++ V++++D S
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLS-VKVMRDP--SGK 229
Query: 224 NRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLGTNAPTVS-WADPRN----VDSSGAS 273
++GF F+ Y H+ A E + +++T +G V A+ + + S
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 274 QVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ + V Y+KNL + ++L+K F G IT V + G+ K GFV F+ A
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEAT 347
Query: 332 KAL 334
KA+
Sbjct: 348 KAV 350
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 187 (70.9 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 45/179 (25%), Positives = 88/179 (49%)
Query: 71 DADAGKSGDMQIE-DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT 129
+ + G G + DE + + PP +++++G +P+D L + G V
Sbjct: 81 EGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVE 140
Query: 130 EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS----------- 178
++ +D+ +++GF FVT VE A KA++K N+ E G+++ + +
Sbjct: 141 ISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQP 200
Query: 179 ---QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
A +R+++GN+P + S L+++ SE G V +V D + + +RGF F++ N
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGK-VVDARVVSD-RETGRSRGFGFVQMSN 257
Score = 144 (55.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+LF+GN+P + S+ L + + G V E++ + +++ +RGF F+ + AE +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGT-VEISEVIYN-RDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK----AVYVKNLPRNVTQDQLKKLFEH 298
+K + F++ TV+ A PR +V +YV NLP +V +L++LF
Sbjct: 172 EKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 299 HGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
HG++ VV + G+ + GFV + + A+ + L+G
Sbjct: 230 HGKVVDARVVSDRETGRSRG-FGFVQMSNENEVNVAIAALDGQNLEG 275
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 173 (66.0 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 47/175 (26%), Positives = 86/175 (49%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++GG+ ++ LR + GEV + IMK K +++++GF FV F++ +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 163 LNNT-EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
+T + + +K S + ++F+G IP N G +L++ + G VT V ++ D +
Sbjct: 71 RPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGV-VTEVVMIYDAEKQ 129
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFK--LGTNAPTVSWADPRNVDSSGASQ 274
RGF FI + + E S + N +F +G V A+PR+ S Q
Sbjct: 130 -RPRGFGFITFED----EQSVDQAVNMHFHDIMGKKVE-VKRAEPRDSKSQAPGQ 178
Score = 131 (51.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/80 (27%), Positives = 49/80 (61%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+++++GGIPH+ E +LR++ + G VTEV ++ + +GF F+TF + + +A++
Sbjct: 91 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 150
Query: 162 KLNNTEFKGKKIRCSTSQAK 181
++ + GKK+ ++ +
Sbjct: 151 -MHFHDIMGKKVEVKRAEPR 169
Score = 127 (49.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 41/162 (25%), Positives = 81/162 (50%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+LF+G + + E L+ S+ G V V ++KD K ++ +RGF F+++ + C
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCV-IMKD-KTTNQSRGFGFVKFKDPNCV--GT 66
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
+ P+ G N PR+ D+S ++++ +V +P N + +L++ F+ G +
Sbjct: 67 VLASRPHTLDGRNQK-----GPRS-DNSKSNKI---FVGGIPHNCGETELREYFKKFGVV 117
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
T+VV+ Q GF+ F + S +A+ N +++ G
Sbjct: 118 TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMG 158
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 195 (73.7 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 66/255 (25%), Positives = 116/255 (45%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+AF+ + A+ + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 AS--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK+LF +G+ V V G+ K GFV F +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKG-FGFVSFEKHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA++ +++G
Sbjct: 244 ANKAVEEMNGKDING 258
Score = 126 (49.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L++ G+ V++M + ++KG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A+KA++++N + GK + +Q K
Sbjct: 233 FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKK 269
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 195 (73.7 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 67/255 (26%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + DA+E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK LF G V V + G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ EL+G
Sbjct: 244 AQKAVDEMNGKELNG 258
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 193 (73.0 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 66/255 (25%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK+LF G V V + G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ EL+G
Sbjct: 244 AQKAVDEMNGKELNG 258
Score = 140 (54.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L++ G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 193 (73.0 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 66/255 (25%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK+LF G V V + G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ EL+G
Sbjct: 244 AQKAVDEMNGKELNG 258
Score = 140 (54.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L++ G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 192 (72.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 64/253 (25%), Positives = 116/253 (45%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 130
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+V D +N S +G+AF+ + A+ + +KM N + S + +
Sbjct: 131 VVCD-ENGS--KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAK 187
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
A + VY+KN ++ +LK+LF+ +G+ V V G+ + GFV + + A
Sbjct: 188 AKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRG-FGFVSYEKHEDAN 246
Query: 332 KALKNTEKYELDG 344
KA++ EL+G
Sbjct: 247 KAVEEMNGTELNG 259
Score = 127 (49.8 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AE+ A + VYI D + L++ G+ V++M + +++G
Sbjct: 175 KSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRG 233
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV++ E A+KA++++N TE GK + +Q K
Sbjct: 234 FGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKK 270
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 191 (72.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 66/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK LF G V V + G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ EL+G
Sbjct: 244 AQKAVDEMNGKELNG 258
Score = 144 (55.7 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 191 (72.3 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 66/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK LF G V V + G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ EL+G
Sbjct: 244 AQKAVDEMNGKELNG 258
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 191 (72.3 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 66/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK LF G V V + G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ EL+G
Sbjct: 244 AQKAVDEMNGKELNG 258
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 191 (72.3 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 66/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK LF G V V + G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ EL+G
Sbjct: 244 AQKAVDEMNGKELNG 258
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 191 (72.3 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 66/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK LF G V V + G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ EL+G
Sbjct: 244 AQKAVDEMNGKELNG 258
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 191 (72.3 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 66/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK LF G V V + G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ EL+G
Sbjct: 244 AQKAVDEMNGKELNG 258
Score = 144 (55.7 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 185 (70.2 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 62/251 (24%), Positives = 109/251 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLF---IGNI-PRNWGSEDLQKVVSEVGPGVTGVELVKD 217
+N KG+ IR SQ L +GNI +N K + + + K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--GASQV 275
+ +RGF F+ + H+ A+ + M L V R + GA +
Sbjct: 131 ACDEHGSRGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELGARAL 188
Query: 276 KA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ +YVKNLP +V + L+ LF G++ V V G + GFV+F + A KA
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEEAQKA 247
Query: 334 LKNTEKYELDG 344
+ + E+ G
Sbjct: 248 VVHMNGKEVSG 258
Score = 121 (47.7 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P D E L+D G++ V++M+ +S ++
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 190 (71.9 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 64/256 (25%), Positives = 111/256 (43%)
Query: 100 HG---SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
HG S +Y+G + D +E L + IG + +R+ + + + G+A++ F+ A
Sbjct: 6 HGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 157 SKAIDKLNNTEFKGKKIRCSTSQAK---YRLFIGNI-PRNWGSEDLQKVVSEVGPGVTGV 212
+A+D +N KG+ IR S R +GNI +N + K + + +
Sbjct: 66 ERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSI 125
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS-- 270
K + N +RGF F+ + H+ A+ + M L V R +
Sbjct: 126 LSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG--MLLNDRKVFVGHFKSRQKREAEL 183
Query: 271 GASQV--KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
GA + +YVKNL ++ + L+ LF G+ V V GQ + GF++F +
Sbjct: 184 GARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRG-FGFINFEKHE 242
Query: 329 SAMKALKNTEKYELDG 344
A KA+ + E+ G
Sbjct: 243 EAQKAVDHMNGKEVSG 258
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +K+ AEL A + +Y+ + D E L+D G+ V++M+ + +++G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNG-QSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F F+ F E A KA+D +N E G+ + +Q +
Sbjct: 233 FGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKR 269
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 190 (71.9 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 65/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN---VD-S 269
+V D S RGF F+ + H+ A+ + M L V R V+
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQNAISTMNG--MLLNDRKVFVGHFKSRREREVELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKNL +V + +L+ LF G++ V V G + GFV+F +
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRG-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ N E+ G
Sbjct: 244 AQKAVVNMNGREVSG 258
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ EL A + +Y+ + D E L+D G++ V++M+ DS ++G
Sbjct: 174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKR 269
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 190 (71.9 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 66/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+AF+ + + A + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYAFVHFETQEAANKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 AS--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN V + L++LF G+ V V G+ K GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKG-FGFVSYEKHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA++ E+ G
Sbjct: 244 ANKAVEEMNGKEMSG 258
Score = 137 (53.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI + + +LR+ G+ V++M+ S ++KG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV++ E A+KA++++N E GK I +Q K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 49/183 (26%), Positives = 89/183 (48%)
Query: 168 FKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGVTGVELVKDMKNSSN 223
FK +K R + AK + F +N+G E +L+++ S+ G ++ V++++D S
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLS-VKVMRDC--SGK 229
Query: 224 NRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLGTNAPTVS-WADPRN----VDSSGAS 273
++GF F+ Y H+ A E + ++M+ + +G V A+ + + S
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 274 QVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ + V Y+KNL + ++L+K F G IT V + G+ K GFV F+ A
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEAT 347
Query: 332 KAL 334
KA+
Sbjct: 348 KAV 350
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 190 (71.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 66/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+AF+ + + A + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYAFVHFETQEAANKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 AS--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN V + L++LF G+ V V G+ K GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKG-FGFVSYEKHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA++ E+ G
Sbjct: 244 ANKAVEEMNGKEMSG 258
Score = 137 (53.3 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI + + +LR+ G+ V++M+ S ++KG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV++ E A+KA++++N E GK I +Q K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 49/183 (26%), Positives = 89/183 (48%)
Query: 168 FKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGVTGVELVKDMKNSSN 223
FK +K R + AK + F +N+G E +L+++ S+ G ++ V++++D S
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLS-VKVMRDC--SGK 229
Query: 224 NRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLGTNAPTVS-WADPRN----VDSSGAS 273
++GF F+ Y H+ A E + ++M+ + +G V A+ + + S
Sbjct: 230 SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERIS 289
Query: 274 QVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ + V Y+KNL + ++L+K F G IT V + G+ K GFV F+ A
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEAT 347
Query: 332 KAL 334
KA+
Sbjct: 348 KAV 350
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 192 (72.6 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 71/275 (25%), Positives = 125/275 (45%)
Query: 77 SGDMQIEDEDEKKKHAELLALPPHGS-----EVYIGGIPHDASEHDLRDFCQSIGEVTEV 131
S + + ED +K K + +A GS + I G+ +E +L + +G+V +
Sbjct: 298 SSEKKREDSLDKTKIQQSIA-EMEGSFKKIPSIKITGLNDSLTEKELEEALNEVGKVHTI 356
Query: 132 RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ-AKYRLFIGNIP 190
K K FA V N +A +KLNN++ K + + A LF+GN+
Sbjct: 357 TYEGSK-----KDFAIVQMENHTIAK---EKLNNSKLKNCTLSITDIPLADSLLFVGNLG 408
Query: 191 RNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250
+ G E L+K+ + G + + L+K+ + + N+G+AFI+Y A ++ + + F
Sbjct: 409 NDVGKEQLKKMFEKHGT-IDRIILIKN-RRTGENKGYAFIDYRTKLQASTAKSSLGSIVF 466
Query: 251 KLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQ-LKKLFEHHGRITKVVVPP 309
T V WA+ N ++ + K ++V LPR+ L+K+F G+I V P
Sbjct: 467 NRRTLR--VDWAE--NCNTMESMHSKTIFVDRLPRSFADVPILRKVFSPFGKIKDCNVVP 522
Query: 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
GQ + F+ + A KA + + +L G
Sbjct: 523 NYYGQPRG-FAFIDYNNVEDAEKAQRMMNEKDLKG 556
Score = 169 (64.5 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 51/189 (26%), Positives = 95/189 (50%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P S +++G + +D + L+ + G + + ++K + + ENKG+AF+ +R A
Sbjct: 395 IPLADSLLFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKLQA 454
Query: 157 SKAIDKLNNTEFKGKKIR------CSTSQAKYR--LFIGNIPRNWGSED-LQKVVSEVGP 207
S A L + F + +R C+T ++ + +F+ +PR++ L+KV S G
Sbjct: 455 STAKSSLGSIVFNRRTLRVDWAENCNTMESMHSKTIFVDRLPRSFADVPILRKVFSPFGK 514
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV 267
+ +V + RGFAFI+Y+N + AE +++ M + K G V++A+P
Sbjct: 515 -IKDCNVVPNYYGQP--RGFAFIDYNNVEDAEKAQRMMNEKDLK-GYKI-RVNFANP--- 566
Query: 268 DSSGASQVK 276
G S VK
Sbjct: 567 SKPGHSLVK 575
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 188 (71.2 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 60/253 (23%), Positives = 114/253 (45%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+V D +N S +G+ F+ + H+ AE + +KM N + S + +
Sbjct: 130 VVCD-ENGS--KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAR 186
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
A + VY+KN ++ ++LK++F +G + V G+ K GFV F A
Sbjct: 187 AKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKG-FGFVSFERHEDAQ 245
Query: 332 KALKNTEKYELDG 344
+A+ E++G
Sbjct: 246 RAVDEMNGKEMNG 258
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRD-FCQSIGEVTEVRIMKGKDSSENK 143
+ K++ AE+ A + VYI D + L++ FC+ G +R+M DS ++K
Sbjct: 174 KSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCK-YGPALSIRVMTD-DSGKSK 231
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
GF FV+F E A +A+D++N E GK++ +Q K
Sbjct: 232 GFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK 269
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 188 (71.2 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 61/255 (23%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + +KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ D+LK +F +G + V + G+ + GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A +A+ E++G
Sbjct: 244 AQRAVDEMNGKEMNG 258
Score = 136 (52.9 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G +R+M ++ +++G
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A +A+D++N E GK I +Q K
Sbjct: 233 FGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKK 269
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 175 (66.7 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 51/193 (26%), Positives = 93/193 (48%)
Query: 84 DEDEKKKHAELLALPPHG--SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
+E+EK A + PP +++Y G +P++ L Q V ++ +D+ +
Sbjct: 65 EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQ 124
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS------------QAKYRLFIGNI 189
++GFAFVT NVE + ID L+ TE+ G+ ++ + + + +++LF+GN+
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNL 184
Query: 190 PRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249
SE L E G V G +V D ++ +RG+ F+ Y + E + + +
Sbjct: 185 SWTVTSESLAGAFRECGD-VVGARVVFD-GDTGRSRGYGFVCYSSKAEMETALESLDG-- 240
Query: 250 FKLGTNAPTVSWA 262
F+L A V+ A
Sbjct: 241 FELEGRAIRVNLA 253
Score = 121 (47.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 43/166 (25%), Positives = 81/166 (48%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSE-VGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
+L+ GN+P N S L +++ + P + VE++ + +++ +RGFAF+ N +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPEL--VEVLYN-RDTGQSRGFAFVTMSNVEDCNII 142
Query: 242 RQKMTNPNFKLGTNAPTVSWAD-PR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHH 299
+ + LG A V++AD P+ N + ++V NL VT + L F
Sbjct: 143 IDNLDGTEY-LG-RALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFREC 200
Query: 300 GRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
G + VV G+ + GFV ++ ++ AL++ + +EL+G
Sbjct: 201 GDVVGARVVFDGDTGRSRG-YGFVCYSSKAEMETALESLDGFELEG 245
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 169 (64.5 bits), Expect = 9.5e-12, Sum P(3) = 9.5e-12
Identities = 59/250 (23%), Positives = 116/250 (46%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K +++ TE
Sbjct: 413 LPYKVTQDELKEVFE---DAVEIRLVS-KDG-KSKGIAYIEFKTEADAEKTLEEKQGTEI 467
Query: 169 KGKKIRC--STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL---------VKD 217
G+ I + + + + F G W E V+S + T L +K
Sbjct: 468 DGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKV 527
Query: 218 MKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQV 275
+N + ++G+AFIE+ + E +++ + + N + + A + PR ++ +
Sbjct: 528 PQNQNGKSKGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 584
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++VK L T++ LK+ F+ G I +V + G K GFV F A A +
Sbjct: 585 KTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 641
Query: 336 NTEKYELDGD 345
E E+DG+
Sbjct: 642 AMEDGEIDGN 651
Score = 146 (56.5 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 46/178 (25%), Positives = 86/178 (48%)
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226
E K +K+ + + LF+GN+ + + +L+ +S+V + +V D++ + R
Sbjct: 305 EAKKQKVEATEPTTSFNLFVGNLNFSKSASELKTGISDVF-AKNDLAVV-DVRIGVS-RK 361
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 362 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLPYK 416
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
VTQD+LK++FE I V +K G+ K I ++ F + A K L+ + E+DG
Sbjct: 417 VTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADAEKTLEEKQGTEIDG 469
Score = 131 (51.2 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 38/176 (21%), Positives = 87/176 (49%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 503 LSNLAYSATEETLQEVFE---KATFIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 558
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
E +G+ IR + SQ LF+ + E ++ + E G +V
Sbjct: 559 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL----SEETTEETLKESFDGSIRARIV 614
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 615 TDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 667
Score = 57 (25.1 bits), Expect = 9.5e-12, Sum P(3) = 9.5e-12
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 2 PREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
P ++ A+AAA P ++ DE D DED D
Sbjct: 169 PAVVKGAAAAAAPASDDEEEEEDEDEDEDEDED 201
Score = 49 (22.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K D D
Sbjct: 378 ELTGLKVFGNEIKLEKPKGKDSKKDRD 404
Score = 44 (20.5 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 18/90 (20%), Positives = 35/90 (38%)
Query: 71 DADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE 130
D+D D + ++EDE++ + G+ D E + D + E E
Sbjct: 144 DSDEEDEDDSEEDEEDEEEDEDDFEPAVVKGAAAAAAPASDDEEEEEDEDEDEDEDEDDE 203
Query: 131 VRIMKGKDSSENKGFAFVTFRNVELASKAI 160
+ +D SE + V + + +KA+
Sbjct: 204 ----EEEDDSEEEAMETVPAKGKKAPAKAV 229
Score = 43 (20.2 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
+P + + A A A PV+ K DE + DE+++
Sbjct: 217 VPAKGKKAPAKAVPVKA-KSTAEDEDEEEDEEDE 249
Score = 40 (19.1 bits), Expect = 9.5e-12, Sum P(3) = 9.5e-12
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 71 DADAGKSGDMQIEDEDEKKKHAE 93
+ D + D + EDEDE+++ E
Sbjct: 262 EEDEEEEEDEEDEDEDEEEEEEE 284
Score = 39 (18.8 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 11 AAEPVELEKPVGSDEKVDFDEDND 34
A P E+E+ DE++ DE++D
Sbjct: 18 APPPKEVEED-SEDEEMSDDEEDD 40
Score = 39 (18.8 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 71 DADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIP 110
D D + D E+E++ + + +P G + +P
Sbjct: 191 DEDEDEDEDEDDEEEEDDSEEEAMETVPAKGKKAPAKAVP 230
Score = 38 (18.4 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 5 MESASAAAEPVELEKPVGSDEKVDFDEDND 34
+++ S A + E E +++ D DED D
Sbjct: 231 VKAKSTAEDEDEEEDEEDEEDEEDDDEDED 260
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 186 (70.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 62/245 (25%), Positives = 113/245 (46%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + ++ L + G+V VR+ + + + G+ +V + + AS+A++
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 162 KLNNTEFKGKKIRC--STSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN G+ IR S R +FI N+ ++ + L + S GP + +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S ++G+ F++Y + A+ + K+ N K P V D SG
Sbjct: 164 VAVDP--SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQR---DPSG 218
Query: 272 ASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+VK VYVKNL +++ ++L K+F G T V+ G+ K GFV+F
Sbjct: 219 -EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG-FGFVNFENSDD 276
Query: 330 AMKAL 334
A +A+
Sbjct: 277 AARAV 281
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 185 (70.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 62/251 (24%), Positives = 109/251 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLF---IGNI-PRNWGSEDLQKVVSEVGPGVTGVELVKD 217
+N KG+ IR SQ L +GNI +N K + + + K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--GASQV 275
+ +RGF F+ + H+ A+ + M L V R + GA +
Sbjct: 131 ACDEHGSRGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELGARAL 188
Query: 276 KA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ +YVKNLP +V + L+ LF G++ V V G + GFV+F + A KA
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEEAQKA 247
Query: 334 LKNTEKYELDG 344
+ + E+ G
Sbjct: 248 VVHMNGKEVSG 258
Score = 121 (47.7 bits), Expect = 0.00022, P = 0.00022
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P D E L+D G++ V++M+ +S ++
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 185 (70.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 65/256 (25%), Positives = 113/256 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV----SWADPRNVD- 268
+V D S RGF F+ + H+ A+ Q +T N L + R V+
Sbjct: 130 VVCDDHGS---RGFGFVHFETHEAAQ---QAITTMNGMLLNDRKVFVGHFKSRREREVEL 183
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ A + +YVKNL +V + L+ LF G++ V V G + GFV+F +
Sbjct: 184 GARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRG-FGFVNFQKHE 242
Query: 329 SAMKALKNTEKYELDG 344
A KA+ + E+ G
Sbjct: 243 EAQKAVMDMNGKEVSG 258
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ EL A + +Y+ + D E L+D G++ V++M+ DS ++G
Sbjct: 174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV F+ E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKR 269
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 169 (64.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 59/250 (23%), Positives = 116/250 (46%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K +++ TE
Sbjct: 54 LPYKVTQDELKEVFE---DAVEIRLVS-KDG-KSKGIAYIEFKTEADAEKTLEEKQGTEI 108
Query: 169 KGKKIRC--STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL---------VKD 217
G+ I + + + + F G W E V+S + T L +K
Sbjct: 109 DGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKV 168
Query: 218 MKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQV 275
+N + ++G+AFIE+ + E +++ + + N + + A + PR ++ +
Sbjct: 169 PQNQNGKSKGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 225
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++VK L T++ LK+ F+ G I +V + G K GFV F A A +
Sbjct: 226 KTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 282
Query: 336 NTEKYELDGD 345
E E+DG+
Sbjct: 283 AMEDGEIDGN 292
Score = 131 (51.2 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 38/176 (21%), Positives = 87/176 (49%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 144 LSNLAYSATEETLQEVFE---KATFIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 199
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
E +G+ IR + SQ LF+ + E ++ + E G +V
Sbjct: 200 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL----SEETTEETLKESFDGSIRARIV 255
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 256 TDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 308
Score = 116 (45.9 bits), Expect = 0.00036, P = 0.00036
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 225 RGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLP 284
R F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 1 RKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLP 55
Query: 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
VTQD+LK++FE I V +K G+ K I ++ F + A K L+ + E+DG
Sbjct: 56 YKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADAEKTLEEKQGTEIDG 110
Score = 49 (22.3 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K D D
Sbjct: 19 ELTGLKVFGNEIKLEKPKGKDSKKDRD 45
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 173 (66.0 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 53/181 (29%), Positives = 91/181 (50%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE-----LAS 157
++++GG+ ++ LR + GEV + IMK K +++++GF FV F++ LAS
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 158 K--AIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
+ +D N + K K R S++ ++F+G IP N G +L++ + G VT V ++
Sbjct: 116 RPHTLDG-RNIDPKQKGPRSDNSKSN-KIFVGGIPHNCGETELREYFKKFGV-VTEVVMI 172
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK--LGTNAPTVSWADPRNVDSSGAS 273
D + RGF FI + + E S + N +F +G V A+PR+ S
Sbjct: 173 YDAEKQ-RPRGFGFITFED----EQSVDQAVNMHFHDIMGKKVE-VKRAEPRDSKSQAPG 226
Query: 274 Q 274
Q
Sbjct: 227 Q 227
Score = 133 (51.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 44/168 (26%), Positives = 84/168 (50%)
Query: 178 SQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236
+QA R LF+G + + E L+ S+ G V V ++KD K ++ +RGF F+++ +
Sbjct: 50 AQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCV-IMKD-KTTNQSRGFGFVKFKDPN 107
Query: 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLF 296
C + P+ G N PR+ D+S ++++ +V +P N + +L++ F
Sbjct: 108 CV--GTVLASRPHTLDGRNIDPKQ-KGPRS-DNSKSNKI---FVGGIPHNCGETELREYF 160
Query: 297 EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+ G +T+VV+ Q GF+ F + S +A+ N +++ G
Sbjct: 161 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMG 207
Score = 131 (51.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 22/80 (27%), Positives = 49/80 (61%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+++++GGIPH+ E +LR++ + G VTEV ++ + +GF F+TF + + +A++
Sbjct: 140 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 199
Query: 162 KLNNTEFKGKKIRCSTSQAK 181
++ + GKK+ ++ +
Sbjct: 200 -MHFHDIMGKKVEVKRAEPR 218
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 180 (68.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 164 NNTEFKGKKIRCS-------TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
NNT I CS T +K L + +P+N E+L+ + +G + +LV+
Sbjct: 41 NNTANCPNTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVR 99
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
D + G+ F+ Y + K AE + + +L T VS+A P SS + +
Sbjct: 100 DKITEGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDA 153
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV LP+ +TQ +L++LF +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 212
Score = 137 (53.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 41/169 (24%), Positives = 82/169 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-DSSENKGFAFVTFRNVELASKAI 160
+ + + +P + ++ +L+ SIGE+ ++++ K ++ G+ FV + + + A KAI
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 161 DKLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
+ LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T L
Sbjct: 126 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 185
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
V + S RG FI + AE + + + T TV +A+
Sbjct: 186 VDQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 232
Score = 52 (23.4 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 366
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 367 LNGYRL-GD 374
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 183 (69.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 60/254 (23%), Positives = 114/254 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y G + +E L D + + V VR+ + ++ + G+A++ F N A +A++
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T + IR S K +FI N+ + ++ L + S G + +
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT-ILSCK 166
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D+ S +G+ F+++ + A+ + K+ N K + + +++
Sbjct: 167 VAMDVTGRS--KGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTP 224
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ VYVKNLP+ + +D+L+K F G I+ VV + G + GFV+F +A
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECTEAAA 283
Query: 332 KALKNTEKYELDGD 345
A++ L D
Sbjct: 284 SAVEKMNGISLGDD 297
Score = 125 (49.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 41/167 (24%), Positives = 82/167 (49%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
+++ N+P+ G ++L+K + G ++ +++D S N+R F F+ + + A + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGV-ISSAVVMRDQ--SGNSRCFGFVNFECTEAAASAVE 287
Query: 244 KMTNPNFKLGTNAPTVSWADPRN--------------VDSSGASQVKAVYVKNLPRNVTQ 289
KM LG + V A ++ ++ SQ +Y+KNL +V
Sbjct: 288 KMNG--ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDD 345
Query: 290 DQLKKLFEHHGRIT--KVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
++LK++F +G +T KV++ P G + GFV ++ A++AL
Sbjct: 346 EKLKEMFSEYGNVTSSKVMLNPQ--GMSRG-FGFVAYSNPEEALRAL 389
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 182 (69.1 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 65/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D S RGF F+ + H+ A+ + + M L V R + G
Sbjct: 130 VVCDDHGS---RGFGFVHFETHEAAQNAIRTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 272 ASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A ++ +YVKNL +V + L+ LF G+I V V G + GFV+F +
Sbjct: 185 ARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRG-FGFVNFEKHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ + E+ G
Sbjct: 244 AQKAVTDMNGKEVSG 258
Score = 126 (49.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ + D E L+D G++ V++M+ DS ++G
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKR 269
>UNIPROTKB|Q6DCB7 [details] [associations]
symbol:dnd1 "Dead end protein homolog 1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017091 "AU-rich element binding"
evidence=ISS] [GO:0060965 "negative regulation of gene silencing by
miRNA" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0060965 HOVERGEN:HBG051370 EMBL:BC078132
EMBL:AY321494 UniGene:Xl.29785 ProteinModelPortal:Q6DCB7
Xenbase:XB-GENE-1015636 Uniprot:Q6DCB7
Length = 371
Score = 178 (67.7 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 53/165 (32%), Positives = 80/165 (48%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P GSEV+IG IP D E L QS+G++ E R+M S N+GFA+ + + A
Sbjct: 73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMM-TFSGLNRGFAYARYISRRQAI 131
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LN E KG I S K L + +P N+ L+ V+ EV GV+ + L
Sbjct: 132 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHP 191
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
S + A ++Y +H+ A +++ + + L TV+W
Sbjct: 192 SPTKES--QVLAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 182 (69.1 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 66/257 (25%), Positives = 109/257 (42%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + S G + +R+ + + + G+A V F A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV-DSSGA 272
+V D +N S +G F+ + + AE + +KM L V R ++
Sbjct: 130 VVCD-ENGS--KGHGFVHFETEEAAERAIEKMNG--MLLNDRKVFVGQFKSRKEREAELG 184
Query: 273 SQVKA---VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++ K VY+KN + L LF G++ V V + G+ K GFV F
Sbjct: 185 TRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDGDH 346
A KA+ EL+G H
Sbjct: 244 AQKAVDEMNGKELNGKH 260
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL + VYI + L G+V V++M + ++KG
Sbjct: 174 KSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKK 269
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 182 (69.1 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 62/255 (24%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIDKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK++F +G V V G+ K GFV F
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ +++G
Sbjct: 244 AQKAVDEMNGKDMNG 258
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/97 (30%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D ++ L++ G V++M D+ ++KG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N + GK + +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 182 (69.1 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 63/255 (24%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L FI N+ ++ ++ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S +G+ F+ + + AE + KM L V R + G
Sbjct: 130 VVCD-ENGS--KGYGFVHFETQEAAERAIDKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 272 A--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN ++ ++LK+ F +G V V G+ + GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRG-FGFVSFERHED 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ + +L+G
Sbjct: 244 AQKAVDDMNGKDLNG 258
Score = 128 (50.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+++ G V++M D +++G
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D +N + GK I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
>UNIPROTKB|D6R9M7 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00967035
ProteinModelPortal:D6R9M7 SMR:D6R9M7 Ensembl:ENST00000505414
HOGENOM:HOG000206189 ArrayExpress:D6R9M7 Bgee:D6R9M7 Uniprot:D6R9M7
Length = 159
Score = 159 (61.0 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIP 190
+A+ +LNN E + G+ + S RLFIG IP
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIP 159
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 175 (66.7 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+L+ + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 91 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 184
Score = 145 (56.1 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 41/168 (24%), Positives = 83/168 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
+ S RG FI + AE + + + T TV +A+
Sbjct: 159 DQVTGIS--RGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Score = 52 (23.4 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 323
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 324 LNGYRL-GD 331
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 175 (66.7 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+L+ + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 91 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 184
Score = 145 (56.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 41/168 (24%), Positives = 83/168 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
+ S RG FI + AE + + + T TV +A+
Sbjct: 159 DQVTGIS--RGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Score = 52 (23.4 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 336
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 337 LNGYRL-GD 344
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 175 (66.7 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+L+ + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 91 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 184
Score = 145 (56.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 41/168 (24%), Positives = 83/168 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
+ S RG FI + AE + + + T TV +A+
Sbjct: 159 DQVTGIS--RGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Score = 52 (23.4 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 337
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 338 LNGYRL-GD 345
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 175 (66.7 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+L+ + +G + +LV+D K + + G+ F+ Y +
Sbjct: 61 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 118
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 119 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 172
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 173 FSQYGRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 212
Score = 145 (56.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 41/168 (24%), Positives = 83/168 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 186
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
+ S RG FI + AE + + + T TV +A+
Sbjct: 187 DQVTGIS--RGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 232
Score = 52 (23.4 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 364
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 365 LNGYRL-GD 372
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 175 (66.7 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+L+ + +G + +LV+D K + + G+ F+ Y +
Sbjct: 62 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 119
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 120 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 173
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 174 FSQYGRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 213
Score = 145 (56.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 41/168 (24%), Positives = 83/168 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 128 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 187
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
+ S RG FI + AE + + + T TV +A+
Sbjct: 188 DQVTGIS--RGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 233
Score = 52 (23.4 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 366
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 367 LNGYRL-GD 374
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 175 (66.7 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+L+ + +G + +LV+D K + + G+ F+ Y +
Sbjct: 62 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 119
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 120 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 173
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 174 FSQYGRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 213
Score = 145 (56.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 41/168 (24%), Positives = 83/168 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 128 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 187
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
+ S RG FI + AE + + + T TV +A+
Sbjct: 188 DQVTGIS--RGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 233
Score = 52 (23.4 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 365
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 366 LNGYRL-GD 373
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 174 (66.3 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 52/188 (27%), Positives = 94/188 (50%)
Query: 149 TFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
T N S AI+ ++ G +T +K L + +P++ E+L+ + +G
Sbjct: 39 TCNNTAHGSNAINNCSSPIDSG-----NTEDSKTNLIVNYLPQSMTQEELKSLFGSIGE- 92
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
+ +LV+D K + + G+ F+ Y + K AE + + +L T VS+A P
Sbjct: 93 IESCKLVRD-KITGQSLGYGFVNYVDPKDAEKAINTLNG--LRLQTKTIKVSYARP---- 145
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAER 327
SS + + +YV LP+ +TQ +L++LF +GRI T ++ G + +GF+ F +R
Sbjct: 146 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRG-VGFIRFDKR 204
Query: 328 SSAMKALK 335
A +A+K
Sbjct: 205 IEAEEAIK 212
Score = 148 (57.2 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 41/168 (24%), Positives = 82/168 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 186
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
+ S RG FI + AE + + + T TV +A+
Sbjct: 187 DQVTGMS--RGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFAN 232
Score = 52 (23.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 365
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 366 LNGYRL-GD 373
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 177 (67.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 57/251 (22%), Positives = 108/251 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L G++ +R+ + + + G+A++ F+ A A+D
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLF---IGNI-PRNWGSEDLQKVVSEVGPGVTGVELVKD 217
+N KG+ IR SQ L +GNI +N K + + + K
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--GASQV 275
+ + + ++G+ F+ + + A + + M L V R + GA V
Sbjct: 131 VCDENGSKGYGFVHFETQEAANRAIETMNG--MLLNDRKVFVGHFKSRKEREAEMGAKAV 188
Query: 276 KA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ VY+KN ++ ++LK +F G+ V V + G+ + GFV+F A +A
Sbjct: 189 EFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRG-FGFVNFVNHGDARRA 247
Query: 334 LKNTEKYELDG 344
+ EL+G
Sbjct: 248 VTEMNGKELNG 258
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 175 (66.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 48/193 (24%), Positives = 93/193 (48%)
Query: 77 SGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG 136
SG M+ +ED + E +++IGG+ + ++ LRD+ + GEV + +M+
Sbjct: 142 SGAME-SNEDNAE---ETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIRCSTSQAKY-RLFIGNIPRN 192
+ ++GF F+TF+N + ++ + K ++ + K K+ Q K ++F+G +P +
Sbjct: 198 STTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGD 257
Query: 193 WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252
E+ + ++ G V L+ D K++ RGF F+ Y N E + M+ P +
Sbjct: 258 CTEEEFRNFFNQFGR-VLDATLMMD-KDTGRPRGFGFVTYENESAVEAT---MSQPYITI 312
Query: 253 GTNAPTVSWADPR 265
V A P+
Sbjct: 313 HGKPVEVKRATPK 325
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+++++GG+P D +E + R+F G V + +M KD+ +GF FVT+ N E A +A
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATM 305
Query: 162 KLNNTEFKGK--KIRCSTSQAKYR 183
GK +++ +T +A R
Sbjct: 306 SQPYITIHGKPVEVKRATPKASLR 329
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 175 (66.7 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 43/163 (26%), Positives = 85/163 (52%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+LF+G IP+++ E+++ + + + + V L+K+ K ++ +G AF+ + + A+ +
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIA-NIESVSLIKN-KTTNEPQGCAFVSVPSREEADRAI 61
Query: 243 QKMTNPN-FKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301
+++ N F+ N V +AD S ++V LPR+ ++Q+++LFE HG
Sbjct: 62 EQLHNSKKFQGVLNNLQVKYAD-----SEQEKLASKLFVGMLPRSYEEEQIRELFEPHGV 116
Query: 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+ + + P E GF+ F R SA+ A+ +LDG
Sbjct: 117 VEDICILRG-PNSESKGCGFIKFDNRESALSAIATLNGMKLDG 158
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 47/205 (22%), Positives = 106/205 (51%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+++++G IP +E ++++ +I + V ++K K ++E +G AFV+ + E A +AI+
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 162 KLNNTE-FKGK----KIRCSTS-QAKY--RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+L+N++ F+G +++ + S Q K +LF+G +PR++ E ++++ G V +
Sbjct: 63 QLHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGV-VEDIC 121
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+++ +S ++G FI++ N + A + + N V +AD D
Sbjct: 122 ILRGP--NSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEK-DKKKKQ 178
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEH 298
+ + + ++ R Q Q ++ H
Sbjct: 179 KQQQIQIQMQQRQQQQQQQQQQPSH 203
Score = 127 (49.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P GS +++ IP+ S++DL Q G V ++ K++ +KGF FV++ N A+
Sbjct: 400 PQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANL 459
Query: 159 AIDKLNNTEFKGKKIRCSTSQ 179
AI L+ GKK++ S Q
Sbjct: 460 AISNLHGQMMAGKKLKVSLKQ 480
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 172 (65.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 38 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 95
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 96 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 149
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 150 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 189
Score = 149 (57.5 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 104 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 163
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 164 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 218
Score = 48 (22.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 328
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 329 LNGYRL-GD 336
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 172 (65.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 40 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 97
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 98 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 151
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 191
Score = 149 (57.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 165
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 166 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
Score = 48 (22.0 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 343
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 344 LNGYRL-GD 351
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 172 (65.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 40 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 97
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 98 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 151
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 191
Score = 149 (57.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 165
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 166 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
Score = 48 (22.0 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 343
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 344 LNGYRL-GD 351
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 172 (65.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 102
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 103 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 156
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 196
Score = 149 (57.5 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 170
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 171 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
Score = 48 (22.0 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 348
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 349 LNGYRL-GD 356
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 172 (65.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 102
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 103 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 156
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 196
Score = 146 (56.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 43/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 170
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + +S A
Sbjct: 171 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQA 225
Score = 48 (22.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 348
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 349 LNGYRL-GD 356
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 176 (67.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 62/255 (24%), Positives = 113/255 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + S + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ +R SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D +N S RG F+ + + A + Q M L V R + G
Sbjct: 130 VVCD-ENGS--RGHGFVHFETQEAATRAIQTMNG--MLLNDRKVFVGHFKSRKEREAEFG 184
Query: 272 ASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A ++ VY+KN ++ ++L+++F G+ V V G+ K GFV+F +
Sbjct: 185 ARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKG-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ + E++G
Sbjct: 244 AQKAVADMNGKEING 258
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 172 (65.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 91 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 149 (57.5 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 159 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 213
Score = 48 (22.0 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 350
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 351 LNGYRL-GD 358
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 172 (65.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 91 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 149 (57.5 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 159 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 213
Score = 48 (22.0 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 350
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 351 LNGYRL-GD 358
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 172 (65.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 40 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 97
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 98 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 151
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 191
Score = 149 (57.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 165
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 166 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
Score = 48 (22.0 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 357
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 358 LNGYRL-GD 365
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 172 (65.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 40 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 97
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 98 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 151
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 191
Score = 149 (57.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 165
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 166 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
Score = 48 (22.0 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 357
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 358 LNGYRL-GD 365
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 172 (65.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 56 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 113
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 114 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 167
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 168 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 207
Score = 149 (57.5 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 122 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 181
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 182 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 236
Score = 48 (22.0 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 359
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 360 LNGYRL-GD 367
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 172 (65.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 44 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 101
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 102 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 155
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 156 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 195
Score = 149 (57.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 110 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 169
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 170 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 224
Score = 48 (22.0 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 361
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 362 LNGYRL-GD 369
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 172 (65.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 102
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 103 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 156
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 196
Score = 149 (57.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 170
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 171 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
Score = 48 (22.0 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 362
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 363 LNGYRL-GD 370
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 172 (65.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/161 (28%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 102
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 103 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 156
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 196
Score = 149 (57.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 44/177 (24%), Positives = 86/177 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 170
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ S RG FI + AE + + + T TV +A+ + SS A
Sbjct: 171 DQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
Score = 48 (22.0 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 362
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 363 LNGYRL-GD 370
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 142 (55.0 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 39/162 (24%), Positives = 82/162 (50%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+L + IP + S+ L+ +S+ G + ++KD +++ +RGF ++ + + AE ++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGD-LEDCIVMKD-RSTGRSRGFGYVTFAS---AEDAK 58
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
+ +F LG V A P+ A +V ++V +P +V++ + FE +G I
Sbjct: 59 NALKGEHF-LGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEI 117
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
T + +P ++ IGF+ F+ S +++T ++L G
Sbjct: 118 TDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT--HDLGG 157
Score = 141 (54.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 47/172 (27%), Positives = 77/172 (44%)
Query: 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167
GIP D L+D+ G++ + +MK + + ++GF +VTF + E A A L
Sbjct: 9 GIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA---LKGEH 65
Query: 168 FKGKKI---RCSTSQ------AKY--RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
F G +I + +T + AK R+F+ IP + D + G +T + + K
Sbjct: 66 FLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGE-ITDLYMPK 124
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
D NS +RG FI + + A+ S + + LG V A P+ D
Sbjct: 125 DY-NSKQHRGIGFITFSS---AD-SVEDLMEDTHDLGGTTVAVDRATPKEDD 171
Score = 93 (37.8 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+ +++ IP SE D R + GE+T++ + K +S +++G F+TF + +
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSAD 143
Score = 72 (30.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKN 336
++V LP+ + D L+ F G I +P P + +R GFV FAE A + +
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPK-DPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 337 TEK 339
+ +
Sbjct: 301 SHE 303
Score = 67 (28.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
++F+G +P+ +DL+ G + + KD K S + RGF F+ + + A+
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGH-IQDAYIPKDPKRSGH-RGFGFVTFAENGVAD 295
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 153 (58.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 47/172 (27%), Positives = 86/172 (50%)
Query: 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
C + L + +P+N ++L+ + S +G V +L++D K + ++ G+ F+ Y N
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYLN 70
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKK 294
K AE R T +L + VS A P + A+ +Y+ LPR +TQ ++
Sbjct: 71 AKDAE--RAINTLNGLRLQSKTIKVSVARPSSESIKDAN----LYISGLPRTMTQKDVED 124
Query: 295 LFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+F GRI ++V+V A G + + F+ F +RS A +A+ + ++ G
Sbjct: 125 MFLPFGRIINSRVLVDQAT-GLSRG-VAFIRFDKRSEAEEAIASFNGHKPPG 174
Score = 147 (56.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 45/178 (25%), Positives = 83/178 (46%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +LR SIGEV ++++ K + + G+ FV + N + A +AI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 162 KLNNTEFKGKKIRCSTSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S ++ L+I +PR +D++ + G + LV
Sbjct: 80 TLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLV 139
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWADPRNVDSSGA 272
S RG AFI + AE + N + G++ P TV +A N + + A
Sbjct: 140 DQATGLS--RGVAFIRFDKRSEAEEAIASF-NGHKPPGSSEPITVKFAANPNQNKNMA 194
Score = 61 (26.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHF 324
NV SS AS +++ NL ++ + L ++F G +T V V+ + K GFV
Sbjct: 235 NVASS-ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTM 292
Query: 325 AERSSAMKALKNTEKYELDGD 345
A A+ + Y L GD
Sbjct: 293 TNYEEAAMAIASLNGYRL-GD 312
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 171 (65.3 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 46/162 (28%), Positives = 84/162 (51%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
S +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 82 SNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 139
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 140 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 193
Query: 296 FEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI ++++V G +GF+ F +R A +A+K
Sbjct: 194 FSQYGRIITSRILVDQVTGGSRG--VGFIRFDKRIEAEEAIK 233
Score = 146 (56.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 45/178 (25%), Positives = 88/178 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + R SIGE+ ++++ K + ++ G+ FV + + + A KAI+
Sbjct: 88 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 147
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S S A R L++ +P+ ++L+++ S+ G +T LV
Sbjct: 148 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 207
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWADPRNVDSSGA 272
+ S RG FI + AE + + + N G P TV +A+ + +S A
Sbjct: 208 DQVTGGS--RGVGFIRFDKRIEAEEAIKGL-NGQKPSGAAEPITVKFANNPSQKTSQA 262
Score = 48 (22.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L +LF G + V V+ + K GFV A A+ +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 385
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 386 LNGYRL-GD 393
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 170 (64.9 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 49/181 (27%), Positives = 90/181 (49%)
Query: 156 ASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
+S + ++NT ++ + +K L + +P+N E+L+ + +G + +LV
Sbjct: 42 SSNGPNSVSNTCTSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLV 100
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQV 275
+D K + + G+ F+ Y K AE + + +L T VS+A P SS + +
Sbjct: 101 RD-KITGQSLGYGFVNYMEPKDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRD 153
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
+YV LP+ +TQ +L++LF GRI T ++ G + +GF+ F R A +A+
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRG-VGFIRFDRRVEAEEAI 212
Query: 335 K 335
K
Sbjct: 213 K 213
Score = 156 (60.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 48/185 (25%), Positives = 90/185 (48%)
Query: 99 PHGSE-----VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV 153
P+GSE + + +P + ++ +L+ SIGE+ ++++ K + ++ G+ FV +
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 154 ELASKAIDKLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGP 207
+ A KAI+ LN + K I+ S S A R L++ +P+ ++L+++ S+ G
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGR 179
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV 267
+T LV + S RG FI + AE + + + T TV +A+ +
Sbjct: 180 IITSRILVDQVTGVS--RGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 237
Query: 268 DSSGA 272
SS A
Sbjct: 238 KSSQA 242
Score = 53 (23.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + ++ L ++F G +T V V+ + K GFV A A+ +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAVAIAS 365
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 366 LNGYRL-GD 373
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 153 (58.9 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 37/135 (27%), Positives = 67/135 (49%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID- 161
+++IGG+ D ++ DL+D+ GEV + + + ++GF FV F+ E K +D
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 162 ---KLNNTEFKGKKIRC-STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
KLN K+ + T + ++F+G + + E +++ G V +EL D
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMD 120
Query: 218 MKNSSNNRGFAFIEY 232
K ++ RGF FI +
Sbjct: 121 NK-TNKRRGFCFITF 134
Score = 116 (45.9 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 74 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 133
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 134 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 175
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 169 (64.5 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 47/161 (29%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L +P+N E+L+ + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 91 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 184
Score = 144 (55.7 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 41/161 (25%), Positives = 80/161 (49%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+P + ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+ LN
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 169 KGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSS 222
+ K I+ S S A R L++ +P+ ++L+++ S+ G +T LV + S
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGIS 165
Query: 223 NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
RG FI + AE + + + T TV +A+
Sbjct: 166 --RGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Score = 52 (23.4 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 336
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 337 LNGYRL-GD 344
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 169 (64.5 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 47/161 (29%), Positives = 84/161 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L +P+N E+L+ + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
K AE + + +L T VS+A P SS + + +YV LP+ +TQ +L++L
Sbjct: 91 KDAEKAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 184
Score = 144 (55.7 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 41/161 (25%), Positives = 80/161 (49%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+P + ++ +L+ SIGE+ ++++ K + ++ G+ FV + + + A KAI+ LN
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 169 KGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSS 222
+ K I+ S S A R L++ +P+ ++L+++ S+ G +T LV + S
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGIS 165
Query: 223 NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
RG FI + AE + + + T TV +A+
Sbjct: 166 --RGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Score = 52 (23.4 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V NL + + L ++F G +T V V+ + K GFV A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTMTNYDEAAMAIAS 336
Query: 337 TEKYELDGD 345
Y L GD
Sbjct: 337 LNGYRL-GD 344
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 151 (58.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 46/172 (26%), Positives = 86/172 (50%)
Query: 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
C + L + +P+N ++L+ + S +G V +L++D K + ++ G+ F+ Y N
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYLN 70
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKK 294
K AE R T +L + VS+A P + A+ +Y+ LPR +TQ ++
Sbjct: 71 AKDAE--RAINTLNGLRLQSKTIKVSFARPSSETIKDAN----LYISGLPRTMTQKDVED 124
Query: 295 LFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+F G I ++V+V A G + + F+ F +RS A +A+ + ++ G
Sbjct: 125 MFLPFGHIINSRVLVDQAT-GLSRG-VAFIRFDKRSEAEEAIASFNGHKPPG 174
Score = 145 (56.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 47/183 (25%), Positives = 85/183 (46%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +LR SIGEV ++++ K + + G+ FV + N + A +AI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 162 KLNNTEFKGKKIRCSTSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S ++ L+I +PR +D++ + G + LV
Sbjct: 80 TLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLV 139
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWADPRNVDSSGA-- 272
S RG AFI + AE + N + G++ P TV +A N + A
Sbjct: 140 DQATGLS--RGVAFIRFDKRSEAEEAIASF-NGHKPPGSSEPITVKFAANPNQSKNMALL 196
Query: 273 SQV 275
SQ+
Sbjct: 197 SQI 199
Score = 61 (26.5 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHF 324
NV SS AS +++ NL ++ + L ++F G +T V V+ + K GFV
Sbjct: 235 NVASS-ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTM 292
Query: 325 AERSSAMKALKNTEKYELDGD 345
A A+ + Y L GD
Sbjct: 293 TNYEEAAMAIASLNGYRL-GD 312
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 172 (65.6 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 65/255 (25%), Positives = 112/255 (43%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 162 KLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N GK +R SQ A R +FI N+ + ++ + S G + +
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG-NILSCK 150
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---NVD-S 269
+ D S +G+ F+ + + A+ + QK+ L V PR N +
Sbjct: 151 VAIDEDGFS--KGYGFVHFETEEAAQNAIQKVNG--MLLAGKKVFVGKFQPRAQRNRELG 206
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A Q VYVKN + ++ L+KLF G IT V + G+ K GFV FA
Sbjct: 207 ETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKG-FGFVAFANPEE 264
Query: 330 AMKALKNTEKYELDG 344
A A++ ++G
Sbjct: 265 AETAVQALHDSTIEG 279
Score = 116 (45.9 bits), Expect = 0.00084, P = 0.00084
Identities = 48/173 (27%), Positives = 79/173 (45%)
Query: 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236
T++ +++ N ++ E L+K+ ++ G +T E+ M ++GF F+ + N +
Sbjct: 208 TAKQFTNVYVKNFGDHYNKETLEKLFAKFG-NITSCEV---MTVEGKSKGFGFVAFANPE 263
Query: 237 CAEYSRQKMTNPNFKLGTNAPT-VSWADP---RNVD-SSGASQVKA----------VYVK 281
AE + Q + + + GT+ V A R+ + Q KA +YVK
Sbjct: 264 EAETAVQALHDSTIE-GTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVK 322
Query: 282 NLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
NL V D LKK FE +G IT V + G+ K GFV F + A A+
Sbjct: 323 NLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKG-FGFVCFEKPEEATSAV 374
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 167 (63.8 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 43/162 (26%), Positives = 85/162 (52%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N E+ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 32 ATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVDP 89
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
A+ + + KL T VS+A P SS + + +YV LP+ ++Q +++L
Sbjct: 90 NDADKAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKDMEQL 143
Query: 296 FEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI ++++V G + +GF+ F +R+ A +A+K
Sbjct: 144 FSQYGRIITSRILVDQVTAGISRG-VGFIRFDKRNEAEEAIK 184
Score = 157 (60.3 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 43/169 (25%), Positives = 86/169 (50%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + + SIGE+ ++++ K + ++ G+ FV + + A KAI+
Sbjct: 38 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 97
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + + K I+ S S A R L++ +P+ +D++++ S+ G +T LV
Sbjct: 98 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILV 157
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWAD 263
D + +RG FI + AE + + + N LG P TV +A+
Sbjct: 158 -DQVTAGISRGVGFIRFDKRNEAEEAIKGL-NGQKPLGAAEPITVKFAN 204
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 148 (57.2 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G VY+G P +E DL ++ G V+ VRI+ +++ +GFAFV F A +A+
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 161 DKLNNTEFKGKKIRCSTSQ 179
D+ N +F G+ +R + +Q
Sbjct: 63 DQFNGVDFNGRALRVNLAQ 81
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 148 (57.2 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G VY+G P +E DL ++ G V+ VRI+ +++ +GFAFV F A +A+
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 161 DKLNNTEFKGKKIRCSTSQ 179
D+ N +F G+ +R + +Q
Sbjct: 63 DQFNGVDFNGRALRVNLAQ 81
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 147 (56.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 41/154 (26%), Positives = 73/154 (47%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+LFIG IPRN +DL+ + + G + + ++KD K + ++G AF+ Y + A ++
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQYGK-IYELTVIKD-KYTGMHKGCAFLTYCARESAIKAQ 65
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
+ + G N P + DS G + + ++V L + + + ++K+FE G I
Sbjct: 66 SALHYSSGYSGMNRPI----QVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGI 121
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+ V G K FV F S A A+ +
Sbjct: 122 DECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINS 155
Score = 146 (56.5 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 42/174 (24%), Positives = 89/174 (51%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P +++IG IP + E DL+ + G++ E+ ++K K + +KG AF+T+ E A K
Sbjct: 4 PDAIKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIK 63
Query: 159 AIDKLN-NTEFKGK----KIRCSTSQAK---YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A L+ ++ + G +++ + S+ + +LF+G + + ED++K+ G G+
Sbjct: 64 AQSALHYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFG-GID 122
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWAD 263
+++ +S G AF+++ +H A+ + + G ++ V +AD
Sbjct: 123 ECTVLRGPDGTSK-AGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVKFAD 175
Score = 64 (27.6 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
V++ +LP+ T ++ ++F G + V + + GFV F +SA A++
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQAM 418
Query: 338 EKYEL 342
+++
Sbjct: 419 NGFQI 423
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 165 (63.1 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 46/187 (24%), Positives = 87/187 (46%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
+ P G++++IGG+ D S+ DL ++ GEV + I + ++GF FV F++
Sbjct: 45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104
Query: 156 ASKAIDKLNNTEFKGKKI---RCSTSQAKY---RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
K ++ L + GK I R + K ++F+G + + E +++ G +
Sbjct: 105 VDKVLE-LKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE-I 162
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
+EL D K ++ RGF FI Y + E ++ + + ++G+ + A P+ V
Sbjct: 163 ENIELPMDTK-TNERRGFCFITYTDE---EPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 218
Query: 270 SGASQVK 276
Q K
Sbjct: 219 QQQQQQK 225
Score = 112 (44.5 bits), Expect = 0.00081, P = 0.00081
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 86 DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
D K+ A PP +V++GG+ D SE ++++ + GE+ + + ++E +GF
Sbjct: 122 DPKRAKALKGKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF 179
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGK-KIRCSTSQAKYR 183
F+T+ + E K ++ + GK +I+ + + YR
Sbjct: 180 CFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 218
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 165 (63.1 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 46/187 (24%), Positives = 87/187 (46%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
+ P G++++IGG+ D S+ DL ++ GEV + I + ++GF FV F++
Sbjct: 45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104
Query: 156 ASKAIDKLNNTEFKGKKI---RCSTSQAKY---RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
K ++ L + GK I R + K ++F+G + + E +++ G +
Sbjct: 105 VDKVLE-LKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE-I 162
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
+EL D K ++ RGF FI Y + E ++ + + ++G+ + A P+ V
Sbjct: 163 ENIELPMDTK-TNERRGFCFITYTDE---EPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 218
Query: 270 SGASQVK 276
Q K
Sbjct: 219 QQQQQQK 225
Score = 112 (44.5 bits), Expect = 0.00081, P = 0.00081
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 86 DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
D K+ A PP +V++GG+ D SE ++++ + GE+ + + ++E +GF
Sbjct: 122 DPKRAKALKGKEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF 179
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGK-KIRCSTSQAKYR 183
F+T+ + E K ++ + GK +I+ + + YR
Sbjct: 180 CFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 218
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 164 (62.8 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 57/250 (22%), Positives = 116/250 (46%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K ++ TE
Sbjct: 405 LPYKVTQDELKEVFE---DAVEIRLVS-KDG-KSKGIAYIEFKTEADAEKTFEEKQGTEI 459
Query: 169 KGKKIRC--STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL---------VKD 217
G+ I + + + + + G W E V+S + T L +K
Sbjct: 460 DGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 519
Query: 218 MKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQV 275
+N + ++G+AFIE+ + E +++ + + N + + A + PR ++ +
Sbjct: 520 PQNQNGKSKGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 576
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++VK L + T++ LK+ F+ G + +V + G K GFV F A A +
Sbjct: 577 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 633
Query: 336 NTEKYELDGD 345
E E+DG+
Sbjct: 634 AMEDGEIDGN 643
Score = 138 (53.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 44/178 (24%), Positives = 85/178 (47%)
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226
E K +K+ + + LF+GN+ + + +L+ +S++ + +V D++ + R
Sbjct: 297 EAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLF-AKNDLAVV-DVRIGVS-RK 353
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 354 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLPYK 408
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
VTQD+LK++FE I V +K G+ K I ++ F + A K + + E+DG
Sbjct: 409 VTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADAEKTFEEKQGTEIDG 461
Score = 132 (51.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 40/177 (22%), Positives = 89/177 (50%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 495 LSNLSYSATEETLQEVFE---KATFIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 550
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVEL 214
E +G+ IR + SQ LF+ + SED ++ + E G +
Sbjct: 551 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL-----SEDTTEETLKESFDGSVRARI 605
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
V D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 606 VTDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 659
Score = 49 (22.3 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K D D
Sbjct: 370 ELTGLKVFGNEIKLEKPKGKDSKKDRD 396
Score = 47 (21.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 2 PREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
P M++A+AA E E D++ D +ED D
Sbjct: 170 PTVMKAAAAAPASDEEEDDEEDDDEDDDEEDED 202
Score = 43 (20.2 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 11 AAEPVELEKPVGSDEKVDFDEDND 34
A P E+E+ DE++ DED+D
Sbjct: 18 APPPKEVEED-SEDEEMSEDEDDD 40
Score = 39 (18.8 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 2 PREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
P + + A A PV+ + +++ + DED +
Sbjct: 217 PAKGKKAPVKAVPVKAKSTAEDEDEEEDDEDEE 249
Score = 37 (18.1 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 71 DADAGKSGDMQIEDEDE 87
D D + D + EDEDE
Sbjct: 149 DDDDSEEEDEEDEDEDE 165
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 18/88 (20%), Positives = 32/88 (36%)
Query: 73 DAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132
D+ + D E+EDE+ + + P + D E D D + E E
Sbjct: 144 DSDEEDDDDSEEEDEEDEDEDEDEFEPTVMKAAAAAPASDEEEDDEEDDDEDDDEEDED- 202
Query: 133 IMKGKDSSENKGFAFVTFRNVELASKAI 160
+ +D SE + + + KA+
Sbjct: 203 --EDEDDSEEEAMETTPAKGKKAPVKAV 228
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 164 (62.8 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 46/172 (26%), Positives = 82/172 (47%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++GGI + + DL GEV + ++ + + ++GFAFV F E A+
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 163 LNNTEFKGK--KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
T KGK +++ + S+ ++F+G +P ++ +DL+ + G V +E D K
Sbjct: 90 REQT-IKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGK-VDDIEWPFD-KQ 146
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
+ R FAFI + + A+ + + T F GT V A P+ GA
Sbjct: 147 TKARRNFAFIVFEEEESADKASSQ-TKQTF--GTRECDVKKAVPQGKRFPGA 195
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 38/157 (24%), Positives = 69/157 (43%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
++F+G I +EDL ++ G V ++ D N +RGFAF+E+ + + +
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGE-VAQAQVKYDRTNG-RSRGFAFVEFTTGEGCKLA- 86
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
L T+ V + + + K V+V LP + ++ L+ FE G++
Sbjct: 87 ---------LAAREQTIKGKSVE-VKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKV 136
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ P K + + F+ F E SA KA T++
Sbjct: 137 DDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQ 173
Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 88 KKKHAELL-ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
K K E+ A +V++GG+P D SE DLR + G+V ++ K + + FA
Sbjct: 95 KGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Query: 147 FVTFRNVELASKAIDKLNNT 166
F+ F E A KA + T
Sbjct: 155 FIVFEEEESADKASSQTKQT 174
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 165 (63.1 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 47/172 (27%), Positives = 80/172 (46%)
Query: 72 ADA-GKSGDMQIEDEDE-----KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSI 125
A+A G D +EDE +H E A +++IGG+ D ++ DL+D+
Sbjct: 61 AEAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 126 GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID----KLNNTEFKGKKIRC-STSQA 180
GEV + + + ++GF FV F+ E K +D KLN K+ + T +
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
++F+G + + E +++ G V +EL D K ++ RGF FI +
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNK-TNKRRGFCFITF 230
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 271
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 146 (56.5 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
VY+G P +E +L +F SIG++ VRI+ +++ +GFAF+ F A +A++++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 164 NNTEFKGKKIR 174
N EF G+ +R
Sbjct: 67 NGAEFNGRPLR 77
Score = 94 (38.1 bits), Expect = 0.00044, P = 0.00044
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAM 331
S + +VYV N P T+++L F G+I V +V + G+ + F+ FAE SA
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRG-FAFIEFAEEGSAQ 60
Query: 332 KALKNTEKYELDG 344
+A++ E +G
Sbjct: 61 RAVEQMNGAEFNG 73
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 146 (56.5 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 22/78 (28%), Positives = 50/78 (64%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+++Y+G + +D + +L+ F GE+ E +++ +++ +KGFAF+T+ + A +A+
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 162 KLNNTEFKGKKIRCSTSQ 179
K N + +G+KIR + ++
Sbjct: 78 KANGIDLQGRKIRVNIAR 95
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 146 (56.5 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 22/78 (28%), Positives = 50/78 (64%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+++Y+G + +D + +L+ F GE+ E +++ +++ +KGFAF+T+ + A +A+
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 162 KLNNTEFKGKKIRCSTSQ 179
K N + +G+KIR + ++
Sbjct: 78 KANGIDLQGRKIRVNIAR 95
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 163 (62.4 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 58/250 (23%), Positives = 116/250 (46%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K +++ TE
Sbjct: 410 LPYKVTQDELKEVFE---DAVEIRLVS-KDG-KSKGIAYIEFKTEADAEKTLEEKQGTEI 464
Query: 169 KGKKIRC--STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL---------VKD 217
G+ I + + + + G W E V+S + T L +K
Sbjct: 465 DGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKV 524
Query: 218 MKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQV 275
+N + ++G+AFIE+ + E +++ + + N + + A + PR ++ +
Sbjct: 525 PQNQNGKSKGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 581
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++VK L + T++ LK+ F+ G I +V + G K GFV F A A +
Sbjct: 582 KTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 638
Query: 336 NTEKYELDGD 345
E E+DG+
Sbjct: 639 AMEDGEIDGN 648
Score = 144 (55.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 46/178 (25%), Positives = 86/178 (48%)
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226
E K +K+ + + LF+GN+ N + +L+ +S++ + +V D++ + R
Sbjct: 302 EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDLF-AKNDLAVV-DVRIGVS-RK 358
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 359 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLPYK 413
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
VTQD+LK++FE I V +K G+ K I ++ F + A K L+ + E+DG
Sbjct: 414 VTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADAEKTLEEKQGTEIDG 466
Score = 134 (52.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 40/177 (22%), Positives = 89/177 (50%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 500 LSNLSYSATEETLQEVFE---KATHIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 555
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVEL 214
E +G+ IR + SQ LF+ + SED ++ + E G +
Sbjct: 556 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL-----SEDTTEETLKESFDGSIRARI 610
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
V D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 611 VTDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 664
Score = 49 (22.3 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K D D
Sbjct: 375 ELTGLKVFGNEIKLEKPKGKDSKKDRD 401
Score = 46 (21.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
+P + + A A PV+ + +++ D D+D+D
Sbjct: 218 VPAKGKKAPVKAVPVKAKSTAEDEDEEDDDDDDD 251
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 121 (47.7 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 29/138 (21%), Positives = 77/138 (55%)
Query: 78 GD-MQIEDEDEKKKHAELLALPPHGS-EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
GD M++E + + + ++ ++ + +++ +P+ A+E +L + + G+++EV ++
Sbjct: 268 GDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVL 327
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC------STSQAKYRLFIGNI 189
K++ ++G A++ + E A++A+++L+N+ F+G+ + TS + N+
Sbjct: 328 DKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSDKQVN-DTSNL 386
Query: 190 PRNWGSE-DLQKVVSEVG 206
P+ + + + Q+ SE G
Sbjct: 387 PKTFKQKREEQRKASEAG 404
Score = 120 (47.3 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 47/184 (25%), Positives = 79/184 (42%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S + + +P E LRD GE+T+ ++M+ D +++ F F+ FR+ + A +AI
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDG-KSRQFGFIGFRSAQEAQQAIK 60
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWG-----SEDLQKVVSEVGPGVTGVELVK 216
NNT + G + + +++ N PR W E+ K S G + K
Sbjct: 61 YFNNT-YLGTSL--IIVEIAHKVGDENAPRPWSRLSHKKEEEAKKSSSEGLKDGNAKGGK 117
Query: 217 DMKNSSNNRGFA-FIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNVDSSGAS 273
K ++ F F+E H ++ M+ P + G V AD + V S+G
Sbjct: 118 KRKAEVDDPEFQEFLEVHQRSKSKIWSNDMSIPPAPEETGKEKVLVKKADEQIV-SNGVE 176
Query: 274 QVKA 277
KA
Sbjct: 177 PKKA 180
Score = 97 (39.2 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 40/171 (23%), Positives = 73/171 (42%)
Query: 184 LFIGNIPRNWGSEDLQKVVSE-VGPG-VTGVELVKDMKNSSN-NRGFAFIEYHNHKCAEY 240
L + N+ E L+K ++ V G + V ++K KN + G+ F+E+ + + A
Sbjct: 604 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATS 663
Query: 241 SRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK-----AVYVKNLPRNVTQDQLKKL 295
+ + L +A + + + + D G K ++VKN+ T+ +L++L
Sbjct: 664 VYRDLQGT--VLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQL 721
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346
F G+I + +P GQ FV F + A+ A K G H
Sbjct: 722 FSPFGQIKSMRLPKKNIGQYAG-YAFVEFVTKQEALNAKKALASTHFYGRH 771
Score = 92 (37.4 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
RLF+ N+P E+L + S G ++ V LV D K + +RG A+I Y +CA +
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGK-ISEVHLVLD-KETKRSRGIAYILYLIPECAARAM 352
Query: 243 QKMTNPNFK 251
+++ N +F+
Sbjct: 353 EELDNSSFQ 361
Score = 90 (36.7 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 251 KLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA 310
K G N ++ RN D S+ + VKNLP T+ +L ++F G + K+++PP
Sbjct: 464 KAGVNVTSLEKFATRNGDEKNRSK-HILLVKNLPFASTEKELAQMFGKFGSLDKIILPPT 522
Query: 311 KPGQEKNRIGFVHFAERSSAMKALK 335
K + F E + A ALK
Sbjct: 523 KT------MALAVFLEPAEARAALK 541
Score = 70 (29.7 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 15/67 (22%), Positives = 34/67 (50%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
++V+NLP T+++L + F G+I++V + K + I ++ + A +A++
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355
Query: 338 EKYELDG 344
+ G
Sbjct: 356 DNSSFQG 362
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 158 (60.7 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 47/172 (27%), Positives = 86/172 (50%)
Query: 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
C + L + +P+N ++L+ + S +G V +L++D K + ++ G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKK 294
K AE R T +L + VS+A P SS + +Y+ LPR++TQ ++
Sbjct: 71 AKDAE--RAINTLNGLRLQSKTIKVSYARP----SSEVIKDANLYISGLPRSMTQKDVED 124
Query: 295 LFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+F GRI ++V+V G + + F+ F +RS A +A+ N ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTT-GLSRG-VAFIRFDKRSEAEEAITNFNGHKPPG 174
Score = 147 (56.8 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 47/180 (26%), Positives = 86/180 (47%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +LR SIGEV ++++ K + + G+ FV + + A +AI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 162 KLNNTEFKGKKIRCSTSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S ++ L+I +PR+ +D++ + S G + LV
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLV 139
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL--GTNAP-TVSWADPRNVDSSGA 272
S RG AFI + AE + +TN N G++ P TV +A N + + A
Sbjct: 140 DQTTGLS--RGVAFIRFDKRSEAE---EAITNFNGHKPPGSSEPITVKFAANPNQNKNVA 194
Score = 55 (24.4 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHF 324
NV + AS +++ NL ++ + L ++F G +T V V+ + K GFV
Sbjct: 235 NVPGN-ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTM 292
Query: 325 AERSSAMKALKNTEKYELDGD 345
A A+ + Y L GD
Sbjct: 293 TNYEEAAMAIASLNGYRL-GD 312
>UNIPROTKB|Q8IYX4 [details] [associations]
symbol:DND1 "Dead end protein homolog 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0017091 "AU-rich element binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0060965 "negative regulation of gene silencing by
miRNA" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0060965 eggNOG:NOG317467
HOGENOM:HOG000112240 HOVERGEN:HBG051370 OrthoDB:EOG4TB4BN
EMBL:AY321065 EMBL:BC033496 IPI:IPI00217910 RefSeq:NP_919225.1
UniGene:Hs.591262 ProteinModelPortal:Q8IYX4 SMR:Q8IYX4
STRING:Q8IYX4 PhosphoSite:Q8IYX4 DMDM:60389799 PaxDb:Q8IYX4
PRIDE:Q8IYX4 DNASU:373863 Ensembl:ENST00000542735 GeneID:373863
KEGG:hsa:373863 UCSC:uc003lgt.3 CTD:373863 GeneCards:GC05M140030
HGNC:HGNC:23799 MIM:609385 neXtProt:NX_Q8IYX4 PharmGKB:PA134931157
InParanoid:Q8IYX4 OMA:KRECELW PhylomeDB:Q8IYX4 ChiTaRS:DND1
GenomeRNAi:373863 NextBio:100136 Bgee:Q8IYX4 CleanEx:HS_DND1
Genevestigator:Q8IYX4 GermOnline:ENSG00000183403 Uniprot:Q8IYX4
Length = 353
Score = 164 (62.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 45/169 (26%), Positives = 76/169 (44%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEV+IG +P D EH L Q +G + E R+M S N+GFA+ + + A
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112
Query: 158 KAIDKLNNTEFKGK--KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
AI L+N + + C +++ K L + +P N L + +GPG+ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
+ A +++ +H+ A +++ + L V W P
Sbjct: 172 PSPGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 163 (62.4 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 45/159 (28%), Positives = 86/159 (54%)
Query: 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
+K L + +P+N ++L+ + S +G V +L++D K + ++ G+ F+ Y N AE
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYLNPNDAE 89
Query: 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHH 299
R T +L + VS+A P SS + + +Y+ LP+ +TQ ++++F +
Sbjct: 90 --RAISTLNGLRLQSKTIKVSYARP----SSDSIKDANLYISGLPKTMTQKDVEEMFGRY 143
Query: 300 GRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
GRI ++V+V A G + + F+ F +R+ A A+K+
Sbjct: 144 GRIINSRVLVDQAS-GLSRG-VAFIRFDKRAEAEDAIKD 180
Score = 143 (55.4 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 42/176 (23%), Positives = 78/176 (44%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + S+ +LR SIGEV ++++ K + + G+ FV + N A +AI
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 162 KLNNTEFKGKKIRCSTSQAKY------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S ++ L+I +P+ +D++++ G + LV
Sbjct: 94 TLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLV 153
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA-DPRNVDSS 270
S RG AFI + AE + + + TV +A P V ++
Sbjct: 154 DQASGLS--RGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNT 207
Score = 53 (23.7 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHF 324
NV + +S +++ NL ++ + L ++F G +T V V+ + K GFV
Sbjct: 249 NVPGNSSSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKG-FGFVTM 306
Query: 325 AERSSAMKALKNTEKYELDGD 345
A A+ + Y L GD
Sbjct: 307 THYEEAAMAIASLNGYRL-GD 326
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 164 (62.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 57/250 (22%), Positives = 116/250 (46%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K ++ TE
Sbjct: 400 LPYKVTQDELKEVFE---DAAEIRLVS-KDG-KSKGIAYIEFKTEADAEKTFEEKQGTEI 454
Query: 169 KGKKIRC--STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL---------VKD 217
G+ I + + + + + G W E V+S + T L +K
Sbjct: 455 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 514
Query: 218 MKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQV 275
+N + ++G+AFIE+ + E +++ + + N + + A + PR ++ +
Sbjct: 515 PQNQNGKSKGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 571
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++VK L + T++ LK+ F+ G + +V + G K GFV F A A +
Sbjct: 572 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 628
Query: 336 NTEKYELDGD 345
E E+DG+
Sbjct: 629 AMEDGEIDGN 638
Score = 146 (56.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 46/178 (25%), Positives = 84/178 (47%)
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226
E K +K+ + + LF+GN+ N + +L+ +S+V + +V D++ R
Sbjct: 292 EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVV-DVRIGMT-RK 348
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 349 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKERDARTLLAKNLPYK 403
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
VTQD+LK++FE I V +K G+ K I ++ F + A K + + E+DG
Sbjct: 404 VTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKTEADAEKTFEEKQGTEIDG 456
Score = 132 (51.5 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 40/177 (22%), Positives = 89/177 (50%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 490 LSNLSYSATEETLQEVFE---KATFIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 545
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVEL 214
E +G+ IR + SQ LF+ + SED ++ + E G +
Sbjct: 546 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL-----SEDTTEETLKESFDGSVRARI 600
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
V D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 601 VTDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 654
Score = 46 (21.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 20/93 (21%), Positives = 30/93 (32%)
Query: 2 PREMESASAA-AEPVELEKPVGSDEKVDFDEDNDPXXXXXXXXXXXXXXXXXXXXXXXXX 60
P M++A+AA A E ++ DE D DE++D
Sbjct: 172 PAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKN 231
Query: 61 XXXXXXXXXXDADAGKSGDMQIEDEDEKKKHAE 93
D D D ED+D++ E
Sbjct: 232 VAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEE 264
Score = 45 (20.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K + D
Sbjct: 365 ELTGLKVFGNEIKLEKPKGKDSKKERD 391
Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 71 DADAGKSGDM-QIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT 129
D++ + D + EDEDE + A A SE D + D + S E
Sbjct: 152 DSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAM 211
Query: 130 EVRIMKGKDSSE 141
E KGK +++
Sbjct: 212 ETTPAKGKKAAK 223
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 164 (62.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 57/250 (22%), Positives = 116/250 (46%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K ++ TE
Sbjct: 402 LPYKVTQDELKEVFE---DAAEIRLVS-KDG-KSKGIAYIEFKTEADAEKTFEEKQGTEI 456
Query: 169 KGKKIRC--STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL---------VKD 217
G+ I + + + + + G W E V+S + T L +K
Sbjct: 457 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 516
Query: 218 MKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQV 275
+N + ++G+AFIE+ + E +++ + + N + + A + PR ++ +
Sbjct: 517 PQNQNGKSKGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 573
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++VK L + T++ LK+ F+ G + +V + G K GFV F A A +
Sbjct: 574 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 630
Query: 336 NTEKYELDGD 345
E E+DG+
Sbjct: 631 AMEDGEIDGN 640
Score = 146 (56.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 46/178 (25%), Positives = 84/178 (47%)
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226
E K +K+ + + LF+GN+ N + +L+ +S+V + +V D++ R
Sbjct: 294 EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVV-DVRIGMT-RK 350
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 351 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKERDARTLLAKNLPYK 405
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
VTQD+LK++FE I V +K G+ K I ++ F + A K + + E+DG
Sbjct: 406 VTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKTEADAEKTFEEKQGTEIDG 458
Score = 132 (51.5 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 40/177 (22%), Positives = 89/177 (50%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 492 LSNLSYSATEETLQEVFE---KATFIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 547
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVEL 214
E +G+ IR + SQ LF+ + SED ++ + E G +
Sbjct: 548 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL-----SEDTTEETLKESFDGSVRARI 602
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
V D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 603 VTDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 656
Score = 46 (21.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 20/93 (21%), Positives = 31/93 (33%)
Query: 2 PREMESASAA-AEPVELEKPVGSDEKVDFDEDNDPXXXXXXXXXXXXXXXXXXXXXXXXX 60
P M++A+AA A E ++ DE D DE++D
Sbjct: 172 PAAMKAAAAAPASEDEDDEDDEDDEDEDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKN 231
Query: 61 XXXXXXXXXXDADAGKSGDMQIEDEDEKKKHAE 93
D D D +DED++ + E
Sbjct: 232 VAEDEDEEEDDEDEDDDDDDDDDDEDDEDEDDE 264
Score = 45 (20.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K + D
Sbjct: 367 ELTGLKVFGNEIKLEKPKGKDSKKERD 393
Score = 39 (18.8 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 9 SAAAEPVELEKPVGSDEKVDFDEDND 34
+A E + E+ S+E D DED D
Sbjct: 139 NAKKEDSDEEEEDDSEEDEDDDEDED 164
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 71 DADAGKSGDM-QIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT 129
D++ + D + EDEDE + A A SE D + D + S E
Sbjct: 152 DSEEDEDDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDEDDDEEDDSEEEAM 211
Query: 130 EVRIMKGKDSSE 141
E KGK +++
Sbjct: 212 ETTPAKGKKAAK 223
Score = 37 (18.1 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 71 DADAGKSGDMQIEDEDEKKKHAE 93
D D D EDED++++ E
Sbjct: 247 DDDDDDDDDEDDEDEDDEEEEEE 269
>MGI|MGI:2447763 [details] [associations]
symbol:Dnd1 "dead end homolog 1 (zebrafish)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0060965 "negative regulation of gene silencing by miRNA"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447763 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00550000074366 GO:GO:0017091 GO:GO:0007281
GO:GO:0060965 eggNOG:NOG317467 HOGENOM:HOG000112240
HOVERGEN:HBG051370 OrthoDB:EOG4TB4BN CTD:373863 OMA:KRECELW
EMBL:AY321066 EMBL:BC034897 IPI:IPI00229327 IPI:IPI00453686
RefSeq:NP_775559.2 UniGene:Mm.234464 ProteinModelPortal:Q6VY05
SMR:Q6VY05 STRING:Q6VY05 PhosphoSite:Q6VY05 PRIDE:Q6VY05
Ensembl:ENSMUST00000061522 GeneID:213236 KEGG:mmu:213236
UCSC:uc008eom.1 UCSC:uc008eon.1 InParanoid:Q6VY05 NextBio:373893
Bgee:Q6VY05 CleanEx:MM_DND1 Genevestigator:Q6VY05
GermOnline:ENSMUSG00000044595 Uniprot:Q6VY05
Length = 352
Score = 163 (62.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 44/168 (26%), Positives = 75/168 (44%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEVYIG +P D EH L Q +G + E R+M S N+GFA+ + + A
Sbjct: 54 PPSGSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112
Query: 158 KAIDKLNNTEFKGK-KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI L+N + + ++ S K L + +P + L + GP + L+
Sbjct: 113 AAIATLHNHQLRPSCQLLVCRSTEKCELTVDGLPLSLNRRALLLALQPFGPCLQETLLLP 172
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
++ + A +++ H+ A +++ + +L V W P
Sbjct: 173 SPGSAPSQ--IALLKFSTHRAAAMAKKALVEGQSRLCGEQVAVEWLKP 218
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 144 (55.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G VY+G +P+ +E ++ ++ ++G V VRI+ +++ +GFAFV F A +A+
Sbjct: 5 GFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAV 64
Query: 161 DKLNNTEFKGKKIR 174
++LN F G+ +R
Sbjct: 65 EQLNGVAFNGRNLR 78
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 161 (61.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 42/158 (26%), Positives = 75/158 (47%)
Query: 83 EDE---DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS 139
EDE + +H+E +++IGG+ D ++ DL+D+ GEV + + +
Sbjct: 75 EDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT 134
Query: 140 SENKGFAFVTFRNVELASKAID----KLNNTEFKGKKIRC-STSQAKYRLFIGNIPRNWG 194
++GF FV F+ E K +D KLN K+ + T + ++F+G + +
Sbjct: 135 GRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 194
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
E +++ G V +EL D K ++ RGF FI +
Sbjct: 195 EEKIREYFGGFGE-VESIELPMDNK-TNKRRGFCFITF 230
Score = 116 (45.9 bits), Expect = 0.00026, P = 0.00026
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 271
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 164 (62.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 57/250 (22%), Positives = 116/250 (46%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K ++ TE
Sbjct: 401 LPYKVTQDELKEVFE---DAAEIRLVS-KDG-KSKGIAYIEFKTEADAEKTFEEKQGTEI 455
Query: 169 KGKKIRC--STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL---------VKD 217
G+ I + + + + + G W E V+S + T L +K
Sbjct: 456 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 515
Query: 218 MKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQV 275
+N + ++G+AFIE+ + E +++ + + N + + A + PR ++ +
Sbjct: 516 PQNQNGKSKGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 572
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++VK L + T++ LK+ F+ G + +V + G K GFV F A A +
Sbjct: 573 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 629
Query: 336 NTEKYELDGD 345
E E+DG+
Sbjct: 630 AMEDGEIDGN 639
Score = 146 (56.5 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 46/178 (25%), Positives = 84/178 (47%)
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226
E K +K+ + + LF+GN+ N + +L+ +S+V + +V D++ R
Sbjct: 293 EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVV-DVRIGMT-RK 349
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 350 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKERDARTLLAKNLPYK 404
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
VTQD+LK++FE I V +K G+ K I ++ F + A K + + E+DG
Sbjct: 405 VTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKTEADAEKTFEEKQGTEIDG 457
Score = 132 (51.5 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 40/177 (22%), Positives = 89/177 (50%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 491 LSNLSYSATEETLQEVFE---KATFIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 546
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVEL 214
E +G+ IR + SQ LF+ + SED ++ + E G +
Sbjct: 547 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL-----SEDTTEETLKESFDGSVRARI 601
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
V D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 602 VTDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 655
Score = 45 (20.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K + D
Sbjct: 366 ELTGLKVFGNEIKLEKPKGKDSKKERD 392
Score = 43 (20.2 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 4 EMESA---SAAAEPVELEKPVGSDEKVDFDEDND 34
E+E A +AAA P E D++ D DED+D
Sbjct: 169 EIEPAVMKAAAAAPAS-EDEDDEDDEDDEDEDDD 201
Score = 43 (20.2 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 19/94 (20%), Positives = 31/94 (32%)
Query: 2 PREMESASAA--AEPVELEKPVGSDEKVDFDEDNDPXXXXXXXXXXXXXXXXXXXXXXXX 59
P M++A+AA +E + E +++ D DE++D
Sbjct: 172 PAVMKAAAAAPASEDEDDEDDEDDEDEDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAK 231
Query: 60 XXXXXXXXXXXDADAGKSGDMQIEDEDEKKKHAE 93
D D D EDED+ + E
Sbjct: 232 NVAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDEE 265
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 159 (61.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 56/245 (22%), Positives = 117/245 (47%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE- 167
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K +++ TE
Sbjct: 322 LPYKVTQDELKEVFE---DAVEIRLVS-KDG-KSKGIAYIEFKTEADAEKTLEEKQGTEI 376
Query: 168 -FKGKKIRCSTSQA-KYRLFIGN----IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
+ G+K + + K + G + N ++ + EV T +++ ++
Sbjct: 377 DYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGK 436
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQVKAVYV 280
S +G+AFIE+ + E +++ + + N + + A + PR ++ + K ++V
Sbjct: 437 S--KGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV 491
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
K L + T++ LK+ F+ G I +V + G K GFV F A A + E
Sbjct: 492 KGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDG 548
Query: 341 ELDGD 345
E+DG+
Sbjct: 549 EIDGN 553
Score = 138 (53.6 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 45/177 (25%), Positives = 85/177 (48%)
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226
E K +K+ + + LF+GN+ N + +L+ +S++ + +V D++ + R
Sbjct: 214 EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDLF-AKNDLAVV-DVRIGVS-RK 270
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 271 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLPYK 325
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343
VTQD+LK++FE I V +K G+ K I ++ F + A K L+ + E+D
Sbjct: 326 VTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADAEKTLEEKQGTEID 377
Score = 134 (52.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 40/177 (22%), Positives = 89/177 (50%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 405 LSNLSYSATEETLQEVFE---KATHIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 460
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVEL 214
E +G+ IR + SQ LF+ + SED ++ + E G +
Sbjct: 461 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL-----SEDTTEETLKESFDGSIRARI 515
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
V D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 516 VTDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 569
Score = 49 (22.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K D D
Sbjct: 287 ELTGLKVFGNEIKLEKPKGKDSKKDRD 313
Score = 48 (22.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
+P + + A A A PV+ K DE + D+D+D
Sbjct: 130 VPAKGKKAPAKAVPVKA-KSTAEDEDEEDDDDDD 162
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 162 (62.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 44/199 (22%), Positives = 90/199 (45%)
Query: 71 DADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE 130
+ DAG +G +++ + ++++GG+ + +E +LRD GE+
Sbjct: 29 NGDAGAAGSTNGSSDNQSAASGQR----DDDRKLFVGGLSWETTEKELRDHFGKYGEIES 84
Query: 131 VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE---FKGKKIRCSTSQAKY-RLFI 186
+ + + ++GFAF+ F N E AIDK++ + KK+ ++A++ ++F+
Sbjct: 85 INVKTDPQTGRSRGFAFIVFTNTE----AIDKVSAADEHIINSKKVDPKKAKARHGKIFV 140
Query: 187 GNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMT 246
G + E+++ + G + VE+ D K S +GF FI + + + +
Sbjct: 141 GGLTTEISDEEIKTYFGQFG-NIVEVEMPFD-KQKSQRKGFCFITFDSEQVVT---DLLK 195
Query: 247 NPNFKLGTNAPTVSWADPR 265
P K+ V A P+
Sbjct: 196 TPKQKIAGKEVDVKRATPK 214
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 159 (61.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 56/245 (22%), Positives = 117/245 (47%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE- 167
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K +++ TE
Sbjct: 327 LPYKVTQDELKEVFE---DAVEIRLVS-KDG-KSKGIAYIEFKTEADAEKTLEEKQGTEI 381
Query: 168 -FKGKKIRCSTSQA-KYRLFIGN----IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
+ G+K + + K + G + N ++ + EV T +++ ++
Sbjct: 382 DYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGK 441
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQVKAVYV 280
S +G+AFIE+ + E +++ + + N + + A + PR ++ + K ++V
Sbjct: 442 S--KGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV 496
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
K L + T++ LK+ F+ G I +V + G K GFV F A A + E
Sbjct: 497 KGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDG 553
Query: 341 ELDGD 345
E+DG+
Sbjct: 554 EIDGN 558
Score = 138 (53.6 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 45/177 (25%), Positives = 85/177 (48%)
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226
E K +K+ + + LF+GN+ N + +L+ +S++ + +V D++ + R
Sbjct: 219 EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDLF-AKNDLAVV-DVRIGVS-RK 275
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 276 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLPYK 330
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343
VTQD+LK++FE I V +K G+ K I ++ F + A K L+ + E+D
Sbjct: 331 VTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADAEKTLEEKQGTEID 382
Score = 134 (52.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 40/177 (22%), Positives = 89/177 (50%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 410 LSNLSYSATEETLQEVFE---KATHIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 465
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVEL 214
E +G+ IR + SQ LF+ + SED ++ + E G +
Sbjct: 466 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL-----SEDTTEETLKESFDGSIRARI 520
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
V D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 521 VTDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 574
Score = 49 (22.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K D D
Sbjct: 292 ELTGLKVFGNEIKLEKPKGKDSKKDRD 318
Score = 48 (22.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
+P + + A A A PV+ K DE + D+D+D
Sbjct: 165 VPAKGKKAPAKAVPVKA-KSTAEDEDEEDDDDDD 197
Score = 37 (18.1 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 71 DADAGKSGDMQIEDEDE---KKKHAELLALPPHGSE 103
D+D D + ED+DE +K A A P E
Sbjct: 99 DSDEEDEDDSEEEDDDEPAVRKAAAAFGAAPATDDE 134
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 159 (61.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 56/245 (22%), Positives = 117/245 (47%)
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE- 167
+P+ ++ +L++ + + E+R++ KD ++KG A++ F+ A K +++ TE
Sbjct: 327 LPYKVTQDELKEVFE---DAVEIRLVS-KDG-KSKGIAYIEFKTEADAEKTLEEKQGTEI 381
Query: 168 -FKGKKIRCSTSQA-KYRLFIGN----IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
+ G+K + + K + G + N ++ + EV T +++ ++
Sbjct: 382 DYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGK 441
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGASQVKAVYV 280
S +G+AFIE+ + E +++ + + N + + A + PR ++ + K ++V
Sbjct: 442 S--KGYAFIEFASF---EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV 496
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
K L + T++ LK+ F+ G I +V + G K GFV F A A + E
Sbjct: 497 KGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDG 553
Query: 341 ELDGD 345
E+DG+
Sbjct: 554 EIDGN 558
Score = 138 (53.6 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 45/177 (25%), Positives = 85/177 (48%)
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226
E K +K+ + + LF+GN+ N + +L+ +S++ + +V D++ + R
Sbjct: 219 EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDLF-AKNDLAVV-DVRIGVS-RK 275
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
F ++++ + AE + + K+ N + P+ DS + + KNLP
Sbjct: 276 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLPYK 330
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343
VTQD+LK++FE I V +K G+ K I ++ F + A K L+ + E+D
Sbjct: 331 VTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADAEKTLEEKQGTEID 382
Score = 134 (52.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 40/177 (22%), Positives = 89/177 (50%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + ++ ++KG+AF+ F + E A +A++ N
Sbjct: 410 LSNLSYSATEETLQEVFE---KATHIKVPQNQNG-KSKGYAFIEFASFEDAKEALNSCNK 465
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVEL 214
E +G+ IR + SQ LF+ + SED ++ + E G +
Sbjct: 466 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL-----SEDTTEETLKESFDGSIRARI 520
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
V D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 521 VTDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 574
Score = 49 (22.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 4 EMESASAAAEPVELEKPVGSDEKVDFD 30
E+ ++LEKP G D K D D
Sbjct: 292 ELTGLKVFGNEIKLEKPKGKDSKKDRD 318
Score = 48 (22.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
+P + + A A A PV+ K DE + D+D+D
Sbjct: 135 VPAKGKKAPAKAVPVKA-KSTAEDEDEEDDDDDD 167
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 158 (60.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 39/148 (26%), Positives = 71/148 (47%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
+H+E +++IGG+ D ++ DL+D+ GEV + + + ++GF FV
Sbjct: 18 RHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 77
Query: 150 FRNVELASKAID----KLNNTEFKGKKIRC-STSQAKYRLFIGNIPRNWGSEDLQKVVSE 204
F+ E K +D KLN K+ + T + ++F+G + + E +++
Sbjct: 78 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 137
Query: 205 VGPGVTGVELVKDMKNSSNNRGFAFIEY 232
G V +EL D K ++ RGF FI +
Sbjct: 138 FGE-VESIELPMDNK-TNKRRGFCFITF 163
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 103 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 162
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 163 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 204
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 161 (61.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 42/170 (24%), Positives = 84/170 (49%)
Query: 72 ADAGKSG--DMQI---EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIG 126
A AG++G QI + E++ A++ + G ++++GG+ D S+ DL+D+ G
Sbjct: 29 APAGQNGAEGEQINASKGEEDAGCVADISSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFG 88
Query: 127 EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID----KLNNTEFKGKKIRCSTSQAKY 182
EV++ I ++ ++GF F+ F++ E K ++ +L+ KK
Sbjct: 89 EVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPKKAMAMKKDPIK 148
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
++F+G + G + +++ G + +EL D K ++ RGF FI +
Sbjct: 149 KIFVGGLNPEAGEDQIREYFETFGE-IEAIELPMDPK-TNKRRGFVFITF 196
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 60/255 (23%), Positives = 107/255 (41%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YIG + D +E L + G + +R+ + + + +A++ F+ A +A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D S RG+ F+ + H+ A + Q M L V R G
Sbjct: 130 VVCDEHGS---RGYGFVHFETHEAANRAIQTMNG--MLLNDRKVFVGHFKSRRERELEYG 184
Query: 272 ASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A ++ VY+KN ++ +L+++F G V V G+ + GFV++
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRG-FGFVNYGNHEE 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ E++G
Sbjct: 244 AQKAVSEMNGKEVNG 258
Score = 117 (46.2 bits), Expect = 0.00063, P = 0.00063
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VYI D + LR+ + G V++M DS ++GF FV + N E A KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 162 KLNNTEFKGKKIRCSTSQAK 181
++N E G+ I +Q +
Sbjct: 250 EMNGKEVNGRMIYVGRAQKR 269
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 157 (60.3 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 55/174 (31%), Positives = 85/174 (48%)
Query: 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF-----IE 231
+S+A R++IGNIPR +E L K+V E G V V+++ D K S +R F F +E
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHG-AVEKVQVMYD-KYSGRSRRFGFATMKSVE 128
Query: 232 YHNHKCAEYSRQKMTNPNFKLG-TNAPTVSWADPRNVDSSGASQVKA---VYVKNLPRNV 287
N + + + K+ T P S D + S ++ V + VYV NL + V
Sbjct: 129 DANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTV 188
Query: 288 TQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERS---SAMKALKNT 337
T++ L+ LF G++ V PG K+ GFV F+ +A+ AL N+
Sbjct: 189 TKEMLENLFSEKGKVVSAKVSRV-PGTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
Score = 124 (48.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 86 DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
+ ++K A L VYIG IP + L + G V +V++M K S ++ F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179
F T ++VE A+ ++KLN +G++I+ + ++
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITE 153
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 162 (62.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD-MKNSS------NNRGFAFI 230
S AK L I +P+N E+L+ + S +G V +L++D M S ++ G+ F+
Sbjct: 52 SDAKTNLIINYLPQNMSQEELRSLFSSIGE-VESAKLIRDKMAGMSAHHTLGHSLGYGFV 110
Query: 231 EYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQD 290
Y N AE R T +L + VS+A P S G +Y+ LP+ +TQ
Sbjct: 111 NYVNPSDAE--RAINTLNGLRLQSKTIKVSYARP---SSDGIKDAN-LYISGLPKTMTQK 164
Query: 291 QLKKLFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++ +F +GRI ++++V A G + + F+ F +RS A +A+K+
Sbjct: 165 NVEDMFTQYGRIINSRILVDQAS-GLSRG-VAFIRFDKRSEAEEAIKD 210
Score = 127 (49.8 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 55/224 (24%), Positives = 101/224 (45%)
Query: 71 DADAGKSGDMQIEDE--DEKKKHAELLALPPHGSE--VYIGGIPHDASEHDLRDFCQSIG 126
D D+ K G I+ E D + + + P ++ + I +P + S+ +LR SIG
Sbjct: 22 DRDSHK-GASSIKQEVYDMPNGYEDPMGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIG 80
Query: 127 EVTEVRIMKGKDSS--------ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178
EV ++++ K + + G+ FV + N A +AI+ LN + K I+ S +
Sbjct: 81 EVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYA 140
Query: 179 QAKY------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
+ L+I +P+ ++++ + ++ G + LV S RG AFI +
Sbjct: 141 RPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLS--RGVAFIRF 198
Query: 233 HNHKCAEYSRQKMTNPNFKLGTNAP-TVSWADPRNVDSSGASQV 275
AE + + + N + G + P TV +A N + S SQ+
Sbjct: 199 DKRSEAEEAIKDL-NGSKPSGASEPITVKFA--ANPNQSKNSQL 239
Score = 61 (26.5 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHF 324
NV SS +S ++V NL ++ + L ++F G +T V V+ + K GFV
Sbjct: 277 NVASSSSSGW-CIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKG-FGFVTM 334
Query: 325 AERSSAMKALKNTEKYELDGD 345
A A+ + Y L GD
Sbjct: 335 TNYEEAAMAISSLNGYRL-GD 354
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 167 (63.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 65/284 (22%), Positives = 130/284 (45%)
Query: 80 MQIEDEDEKKKHAELLALPPHGSE---VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG 136
M +E + EK K E L + +++ +P+ +E ++++ ++ EVR++
Sbjct: 344 MGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLN 400
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS----TSQAKYRLFIGN---- 188
K+ S +KG A++ F+ A KA+++ TE G+ + SQ + + G
Sbjct: 401 KEGS-SKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK 459
Query: 189 --IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMT 246
I N ++ + E+ T +++ ++ N +G+AF+E+ + A+ +
Sbjct: 460 TLIVNNLSYAASEETLQELFKKATSIKMPQN--NQGRPKGYAFVEFPTAEDAKEALNSCN 517
Query: 247 NPNFK---LGTNAPTVSWADPRNVDSSGA--SQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301
N + + + SW N+++ G Q K ++V+ L + T++ L++ FE G
Sbjct: 518 NTEIEGRAIRLEFSSPSW-QKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GS 574
Query: 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345
I+ +V G K GFV F+ A A + E E+DG+
Sbjct: 575 ISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGN 617
Score = 128 (50.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 42/174 (24%), Positives = 86/174 (49%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + ASE L++ + + T ++ M + KG+AFV F E A +A++ NN
Sbjct: 463 VNNLSYAASEETLQELFK---KATSIK-MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNN 518
Query: 166 TEFKGKKIRCSTSQAKYRLFIGNIPRNWG-------------SEDL-QKVVSEVGPGVTG 211
TE +G+ IR S ++ GN+ G SED ++ + E G
Sbjct: 519 TEIEGRAIRLEFSSPSWQK--GNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSIS 576
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
+V D +++ +++GF F+++ + + A+ +++ M + ++ N T+ +A P+
Sbjct: 577 ARIVTD-RDTGSSKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 627
Score = 128 (50.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 45/195 (23%), Positives = 91/195 (46%)
Query: 151 RNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
R E+A+K+ E K KK + + LF+ N+ E+L+ + E G
Sbjct: 253 RKKEMANKSAP-----EAKKKKTEIKAPASAFSLFVKNLTPTKDYEELRTAIKEFF-GKK 306
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV-DS 269
++ V +++ S+ R F ++++ + + + + Q N +G ++ ++
Sbjct: 307 NLQ-VSEVRIGSSKR-FGYVDFLSAEDMDKALQ--LNGKKLMGLEIKLEKAKSKESLKEN 362
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ ++VKNLP VT+D++K +FE+ + V+ K G K + ++ F +
Sbjct: 363 KKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKG-MAYIEFKTEAE 418
Query: 330 AMKALKNTEKYELDG 344
A KAL+ + E+DG
Sbjct: 419 AEKALEEKQGTEVDG 433
Score = 40 (19.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 8 ASAAAEPVELEKPVGSDEKVDFDEDND 34
A A +E E E+ DE+ + DE+ D
Sbjct: 210 AKAESEDEEDEEDEDEDEEDEDDEEED 236
Score = 39 (18.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 71 DADAGKSGDMQIEDEDEKKKHAELLALP 98
+ D D + EDE+E+ E A+P
Sbjct: 114 EEDEDDEDDEEDEDEEEESDEEEEPAVP 141
Score = 37 (18.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 2 PREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
P + A A AE + E DE + DED++
Sbjct: 202 PAKATPAKAKAESEDEEDEEDEDEDEE-DEDDE 233
Score = 37 (18.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 16/85 (18%), Positives = 28/85 (32%)
Query: 9 SAAAEPVELEKPVGSDEKVDFDEDNDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
SAAA P + V + ++ + +E+ D
Sbjct: 149 SAAAVPAKKPAVVPAKQESEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPA 208
Query: 69 XXDADAGKSGDMQIEDEDEKKKHAE 93
A++ D + EDEDE+ + E
Sbjct: 209 KAKAESEDEEDEEDEDEDEEDEDDE 233
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 167 (63.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 65/284 (22%), Positives = 130/284 (45%)
Query: 80 MQIEDEDEKKKHAELLALPPHGSE---VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG 136
M +E + EK K E L + +++ +P+ +E ++++ ++ EVR++
Sbjct: 346 MGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLN 402
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS----TSQAKYRLFIGN---- 188
K+ S +KG A++ F+ A KA+++ TE G+ + SQ + + G
Sbjct: 403 KEGS-SKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK 461
Query: 189 --IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMT 246
I N ++ + E+ T +++ ++ N +G+AF+E+ + A+ +
Sbjct: 462 TLIVNNLSYAASEETLQELFKKATSIKMPQN--NQGRPKGYAFVEFPTAEDAKEALNSCN 519
Query: 247 NPNFK---LGTNAPTVSWADPRNVDSSGA--SQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301
N + + + SW N+++ G Q K ++V+ L + T++ L++ FE G
Sbjct: 520 NTEIEGRAIRLEFSSPSW-QKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GS 576
Query: 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345
I+ +V G K GFV F+ A A + E E+DG+
Sbjct: 577 ISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGN 619
Score = 128 (50.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 42/174 (24%), Positives = 86/174 (49%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + ASE L++ + + T ++ M + KG+AFV F E A +A++ NN
Sbjct: 465 VNNLSYAASEETLQELFK---KATSIK-MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNN 520
Query: 166 TEFKGKKIRCSTSQAKYRLFIGNIPRNWG-------------SEDL-QKVVSEVGPGVTG 211
TE +G+ IR S ++ GN+ G SED ++ + E G
Sbjct: 521 TEIEGRAIRLEFSSPSWQK--GNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSIS 578
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
+V D +++ +++GF F+++ + + A+ +++ M + ++ N T+ +A P+
Sbjct: 579 ARIVTD-RDTGSSKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 629
Score = 128 (50.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 41/182 (22%), Positives = 87/182 (47%)
Query: 164 NNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
N + + KK + T + + LF+ N+ E+L+ + E G ++ V +++ S+
Sbjct: 263 NKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSS 320
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV-DSSGASQVKAVYVKN 282
R F ++++ + + + + Q N +G ++ ++ + ++VKN
Sbjct: 321 KR-FGYVDFLSAEDMDKALQ--LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKN 377
Query: 283 LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342
LP VT+D++K +FE+ + V+ K G K + ++ F + A KAL+ + E+
Sbjct: 378 LPYRVTEDEMKNVFENALEVRLVL---NKEGSSKG-MAYIEFKTEAEAEKALEEKQGTEV 433
Query: 343 DG 344
DG
Sbjct: 434 DG 435
Score = 40 (19.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 8 ASAAAEPVELEKPVGSDEKVDFDEDND 34
A A +E E E+ DE+ + DE+ D
Sbjct: 214 AKAESEDEEDEEDEDEDEEDEDDEEED 240
Score = 39 (18.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 71 DADAGKSGDMQIEDEDEKKKHAELLALP 98
+ D D + EDE+E+ E A+P
Sbjct: 118 EEDEDDEDDEEDEDEEEESDEEEEPAVP 145
Score = 37 (18.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 2 PREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
P + A A AE + E DE + DED++
Sbjct: 206 PAKATPAKAKAESEDEEDEEDEDEDEE-DEDDE 237
Score = 37 (18.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 16/85 (18%), Positives = 28/85 (32%)
Query: 9 SAAAEPVELEKPVGSDEKVDFDEDNDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
SAAA P + V + ++ + +E+ D
Sbjct: 153 SAAAVPAKKPAVVPAKQESEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPA 212
Query: 69 XXDADAGKSGDMQIEDEDEKKKHAE 93
A++ D + EDEDE+ + E
Sbjct: 213 KAKAESEDEEDEEDEDEDEEDEDDE 237
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 167 (63.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 65/284 (22%), Positives = 130/284 (45%)
Query: 80 MQIEDEDEKKKHAELLALPPHGSE---VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG 136
M +E + EK K E L + +++ +P+ +E ++++ ++ EVR++
Sbjct: 346 MGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLN 402
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS----TSQAKYRLFIGN---- 188
K+ S +KG A++ F+ A KA+++ TE G+ + SQ + + G
Sbjct: 403 KEGS-SKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK 461
Query: 189 --IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMT 246
I N ++ + E+ T +++ ++ N +G+AF+E+ + A+ +
Sbjct: 462 TLIVNNLSYAASEETLQELFKKATSIKMPQN--NQGRPKGYAFVEFPTAEDAKEALNSCN 519
Query: 247 NPNFK---LGTNAPTVSWADPRNVDSSGA--SQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301
N + + + SW N+++ G Q K ++V+ L + T++ L++ FE G
Sbjct: 520 NTEIEGRAIRLEFSSPSW-QKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GS 576
Query: 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345
I+ +V G K GFV F+ A A + E E+DG+
Sbjct: 577 ISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGN 619
Score = 128 (50.1 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 42/174 (24%), Positives = 86/174 (49%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + ASE L++ + + T ++ M + KG+AFV F E A +A++ NN
Sbjct: 465 VNNLSYAASEETLQELFK---KATSIK-MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNN 520
Query: 166 TEFKGKKIRCSTSQAKYRLFIGNIPRNWG-------------SEDL-QKVVSEVGPGVTG 211
TE +G+ IR S ++ GN+ G SED ++ + E G
Sbjct: 521 TEIEGRAIRLEFSSPSWQK--GNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSIS 578
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
+V D +++ +++GF F+++ + + A+ +++ M + ++ N T+ +A P+
Sbjct: 579 ARIVTD-RDTGSSKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 629
Score = 128 (50.1 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 41/182 (22%), Positives = 87/182 (47%)
Query: 164 NNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
N + + KK + T + + LF+ N+ E+L+ + E G ++ V +++ S+
Sbjct: 263 NKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSS 320
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV-DSSGASQVKAVYVKN 282
R F ++++ + + + + Q N +G ++ ++ + ++VKN
Sbjct: 321 KR-FGYVDFLSAEDMDKALQ--LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKN 377
Query: 283 LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342
LP VT+D++K +FE+ + V+ K G K + ++ F + A KAL+ + E+
Sbjct: 378 LPYRVTEDEMKNVFENALEVRLVL---NKEGSSKG-MAYIEFKTEAEAEKALEEKQGTEV 433
Query: 343 DG 344
DG
Sbjct: 434 DG 435
Score = 40 (19.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 8 ASAAAEPVELEKPVGSDEKVDFDEDND 34
A A +E E E+ DE+ + DE+ D
Sbjct: 214 AKAESEDEEDEEDEDEDEEDEDDEEED 240
Score = 39 (18.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 71 DADAGKSGDMQIEDEDEKKKHAELLALP 98
+ D D + EDE+E+ E A+P
Sbjct: 118 EEDEDDEDDEEDEDEEEESDEEEEPAVP 145
Score = 37 (18.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 2 PREMESASAAAEPVELEKPVGSDEKVDFDEDND 34
P + A A AE + E DE + DED++
Sbjct: 206 PAKATPAKAKAESEDEEDEEDEDEDEE-DEDDE 237
Score = 37 (18.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 16/85 (18%), Positives = 28/85 (32%)
Query: 9 SAAAEPVELEKPVGSDEKVDFDEDNDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
SAAA P + V + ++ + +E+ D
Sbjct: 153 SAAAVPAKKPAVVPAKQESEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPA 212
Query: 69 XXDADAGKSGDMQIEDEDEKKKHAE 93
A++ D + EDEDE+ + E
Sbjct: 213 KAKAESEDEEDEEDEDEDEEDEDDE 237
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 142 (55.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 28/102 (27%), Positives = 58/102 (56%)
Query: 80 MQIEDEDEKKKHAELLALPPH--GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK 137
+++++ +E+++ E LA G VY+G + + ++ L +F +G + V I+ +
Sbjct: 6 VRVQETEEERQ--ERLAKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDR 63
Query: 138 DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179
S KG+A++ F E KAID+L+ EF+G+++R + +
Sbjct: 64 FSGLPKGYAYIEFEQTESVQKAIDELHGKEFRGRELRVTAKR 105
>RGD|1583648 [details] [associations]
symbol:Dnd1 "dead end homolog 1 (zebrafish)" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=IEA;ISO] [GO:0035198 "miRNA binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1583648 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366 GO:GO:0003676
OrthoDB:EOG4TB4BN CTD:373863 OMA:KRECELW EMBL:CH473974
IPI:IPI00358331 RefSeq:NP_001102849.1 UniGene:Rn.160920
Ensembl:ENSRNOT00000022685 GeneID:679841 KEGG:rno:679841
UCSC:RGD:1583648 NextBio:717377 Uniprot:D3ZQ06
Length = 352
Score = 161 (61.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 43/168 (25%), Positives = 76/168 (45%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEV+IG +P D EH L Q +G + E R+M S N+GFA+ + + A
Sbjct: 54 PPSGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112
Query: 158 KAIDKLNNTEFKGK-KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI L+N + + ++ S K L + +P + L + +GP + L+
Sbjct: 113 AAIATLHNHQLRPSCQLLVCRSTEKCELTVDGLPLSLNRRALLLALQPLGPCLQETLLLP 172
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
++ + A +++ H+ A +++ + +L V W P
Sbjct: 173 SPGSAPSQ--IALLKFSTHRAAAMAKKALVEGQSRLCGEQVAVEWLKP 218
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 161 (61.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 42/158 (26%), Positives = 75/158 (47%)
Query: 83 EDE---DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS 139
EDE + +H+E +++IGG+ D ++ DL+D+ GEV + + +
Sbjct: 75 EDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT 134
Query: 140 SENKGFAFVTFRNVELASKAID----KLNNTEFKGKKIRC-STSQAKYRLFIGNIPRNWG 194
++GF FV F+ E K +D KLN K+ + T + ++F+G + +
Sbjct: 135 GRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 194
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
E +++ G V +EL D K ++ RGF FI +
Sbjct: 195 EEKIREYFGGFGE-VESIELPMDNK-TNKRRGFCFITF 230
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 271
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 161 (61.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 42/158 (26%), Positives = 75/158 (47%)
Query: 83 EDE---DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS 139
EDE + +H+E +++IGG+ D ++ DL+D+ GEV + + +
Sbjct: 75 EDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT 134
Query: 140 SENKGFAFVTFRNVELASKAID----KLNNTEFKGKKIRC-STSQAKYRLFIGNIPRNWG 194
++GF FV F+ E K +D KLN K+ + T + ++F+G + +
Sbjct: 135 GRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 194
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
E +++ G V +EL D K ++ RGF FI +
Sbjct: 195 EEKIREYFGGFGE-VESIELPMDNK-TNKRRGFCFITF 230
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 271
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 161 (61.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 42/158 (26%), Positives = 75/158 (47%)
Query: 83 EDE---DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS 139
EDE + +H+E +++IGG+ D ++ DL+D+ GEV + + +
Sbjct: 75 EDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT 134
Query: 140 SENKGFAFVTFRNVELASKAID----KLNNTEFKGKKIRC-STSQAKYRLFIGNIPRNWG 194
++GF FV F+ E K +D KLN K+ + T + ++F+G + +
Sbjct: 135 GRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 194
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
E +++ G V +EL D K ++ RGF FI +
Sbjct: 195 EEKIREYFGGFGE-VESIELPMDNK-TNKRRGFCFITF 230
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 271
>ZFIN|ZDB-GENE-030131-4967 [details] [associations]
symbol:rbms1a "RNA binding motif, single stranded
interacting protein 1a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4967 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CR792451
IPI:IPI00507907 Ensembl:ENSDART00000064860 Bgee:E7FAG7
Uniprot:E7FAG7
Length = 398
Score = 162 (62.1 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 47/194 (24%), Positives = 91/194 (46%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YI G+P ++HDL CQ G++ + + K +++ KG+ FV F + A KA+
Sbjct: 57 TNLYIRGLPPGTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAVA 116
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L + + + Q L++ N+P + ++L+ ++ G V +++D
Sbjct: 117 ALKTNGVQAQMAK-QQEQDPTNLYLSNLPVSMDEQELENLLKPFGQ-VVSTRILRDTNGM 174
Query: 222 SNNRGFAFIEYHNHKC----AEYSRQKMTNPNFKLGTNAPTV-SWADPRNVDSSGASQVK 276
S GFA +E KC + ++ + + + + LG + P + +AD Q +
Sbjct: 175 SRGVGFARME-STEKCDAVISHFNGKFIKSSSGMLGASEPLLCKFAD----GGQKKRQSQ 229
Query: 277 AVYVKNLPRNVTQD 290
A Y+ N R T+D
Sbjct: 230 AKYIPN-GRTWTRD 242
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 114 (45.2 bits), Expect = 0.00078, P = 0.00078
Identities = 42/165 (25%), Positives = 76/165 (46%)
Query: 176 STSQAKYRLFIGNIPRNWGSED-LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
S+S+ ++IG++ + W E L S+ G V V+++++ + + R + F+E++
Sbjct: 78 SSSEDNKTIWIGDL-QQWMDESYLHSCFSQAGE-VISVKIIRNKQTGQSER-YGFVEFNT 134
Query: 235 HKCAEYSRQKMTNPNFKLGTNAP-TVSWADPRNVDSSGASQVK-AVYVKNLPRNVTQDQL 292
H AE Q N T P ++WA + + +++V +L +VT L
Sbjct: 135 HAAAEKVLQSY-NGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTML 193
Query: 293 KKLF-EHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
+ F + + KVVV A G K GFV F + S +A+
Sbjct: 194 RDTFASRYPSLKGAKVVVD-ANTGHSKG-YGFVRFGDESERSRAM 236
Score = 112 (44.5 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 41/176 (23%), Positives = 79/176 (44%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + E L GEV V+I++ K + +++ + FV F A K +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 164 N-----NTE--FKGKKIRCSTSQAK------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
N NTE F+ ST + + + +F+G++ + L+ + P +
Sbjct: 146 NGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLK 205
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADPR 265
G ++V D N+ +++G+ F+ + + +E SR MT N + A + A P+
Sbjct: 206 GAKVVVDA-NTGHSKGYGFVRFGDE--SERSRA-MTEMNGVYCSSRAMRIGVATPK 257
Score = 95 (38.5 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
S G S ++V L VT ++L++ F G + V +P K G GFV F++RS
Sbjct: 288 SDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGK-G-----CGFVQFSDRS 341
Query: 329 SAMKALK 335
SA +A++
Sbjct: 342 SAQEAIQ 348
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 161 (61.7 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 51/175 (29%), Positives = 87/175 (49%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+GG+ SE L + G V V + K + ++ ++GF FV F E A AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 164 NNTEFKGKKIRCSTSQAKYR-------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
N + GK I+ + + A + +F+GN+ + L S G + ++++
Sbjct: 75 NMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMR 134
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
D+ +S ++GFAFI + + + ++ + + M N F L A TVS+A R DS G
Sbjct: 135 DV-DSGTSKGFAFINFASFEASDTALEAM-NGQF-LCNRAITVSYAFKR--DSKG 184
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 161 (61.7 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 51/175 (29%), Positives = 87/175 (49%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+GG+ SE L + G V V + K + ++ ++GF FV F E A AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 164 NNTEFKGKKIRCSTSQAKYR-------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
N + GK I+ + + A + +F+GN+ + L S G + ++++
Sbjct: 75 NMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMR 134
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
D+ +S ++GFAFI + + + ++ + + M N F L A TVS+A R DS G
Sbjct: 135 DV-DSGTSKGFAFINFASFEASDTALEAM-NGQF-LCNRAITVSYAFKR--DSKG 184
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 157 (60.3 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 45/169 (26%), Positives = 85/169 (50%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++G IP +E D R + G V I++ K + +KG FVTF + + A +A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 163 LNNTE-FKGKK--IRCSTSQAKYR----LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
L+N + +G ++ + + R LFIG + + E+L+++ ++ G + ++
Sbjct: 116 LHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGH-IEDCSVL 174
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWAD 263
+D S RG AF+ + N CA + ++M + G +AP V +AD
Sbjct: 175 RDQDGKS--RGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFAD 221
Score = 48 (22.0 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 20/91 (21%), Positives = 33/91 (36%)
Query: 252 LGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
+G A T + N D G +++ +LP++ L F G I V K
Sbjct: 480 VGVQATTSAAQMVGNGDVKGPDGAN-LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDK 538
Query: 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342
GFV + SA A+ +++
Sbjct: 539 VTNLSKCFGFVSYENAQSATNAISAMNGFQI 569
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 102 (41.0 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 28/93 (30%), Positives = 46/93 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P +E LR F + G++++ + K+ + +GFAFV F + AS A+
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEG-KFRGFAFVGFLDEGSASNALA 61
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLF-IGNIPRNW 193
K N T F KK+ + R F N PR W
Sbjct: 62 KSNQTFFNSKKLTVE----ECRPFGDANKPRAW 90
Score = 102 (41.0 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 80 MQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS 139
++ D++E+ ++L +++ +P+ E DL+ + GEV+EV+++ K +
Sbjct: 261 LESRDKEEETVREKILET----GRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKT 316
Query: 140 SENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171
KGFA V F E A A L+ FKG+
Sbjct: 317 GACKGFAIVEFVFPEAAVAAYSALDGYVFKGR 348
Score = 82 (33.9 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 265 RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR--IGFV 322
+ V + + V+NLP + +++ LFE G + K + P KPGQ++ GFV
Sbjct: 737 KEVKQKEQGECTKLLVRNLPFEASVKEVETLFETFGAV-KTIRIPKKPGQKQQHRGFGFV 795
Query: 323 HFAERSSAMKA 333
F A +A
Sbjct: 796 DFISADEAHRA 806
Score = 72 (30.4 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVP 308
KNLP V ++L+++FE G TKV++P
Sbjct: 488 KNLPAGVESEELQRMFEKFGDCTKVLMP 515
Score = 71 (30.1 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
RLF+ N+P +DLQ + + G V+ V++V D K + +GFA +E+
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGE-VSEVQVVIDKKTGAC-KGFAIVEF 327
Score = 71 (30.1 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++++NLP +D L+ LF+ +G +++V VV K G K V F +A+ A
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKG-FAIVEFVFPEAAVAAYSA 339
Query: 337 TEKYELDG 344
+ Y G
Sbjct: 340 LDGYVFKG 347
Score = 69 (29.3 bits), Expect = 6.6e-08, Sum P(3) = 6.6e-08
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 278 VYVKNLPRNVTQDQLKKLF-EHHGRITKVV-----VPPAKPGQEKNR-IGFVHFAERSSA 330
++VKNL + T L+ LF + +G + K + PA+P + + GFV F A
Sbjct: 643 LFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPLSMGFGFVQFYTAFDA 702
Query: 331 MKALKNTEKYELDG 344
ALK+ + LDG
Sbjct: 703 KTALKDMQGELLDG 716
Score = 37 (18.1 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 188 NIPRNWGSEDLQKVVSEVG 206
N+P SE+LQ++ + G
Sbjct: 489 NLPAGVESEELQRMFEKFG 507
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 156 (60.0 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID- 161
++++GG+ D S+ DL+D+ GEV + I ++ ++GF F+ F++ K +D
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 162 ---KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+L+ KK ++F+G + E +++ E G + +EL D
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMDP 119
Query: 219 KNSSNNRGFAFIEY 232
K S+ RGF FI +
Sbjct: 120 K-SNKRRGFVFITF 132
Score = 114 (45.2 bits), Expect = 0.00031, P = 0.00031
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++GG+ +A+E +R++ GE+ + + S++ +GF F+TF+ E K ++K
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 144
Query: 163 LNNTEFKGKKIRC 175
+T G K RC
Sbjct: 145 KFHT-ISGSK-RC 155
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 158 (60.7 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 44/172 (25%), Positives = 79/172 (45%)
Query: 71 DADAGKSGDMQIEDEDE-----KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSI 125
+A+ K D +EDE +H E +++IGG+ D ++ DL+D+
Sbjct: 60 EAEGAKI-DASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 118
Query: 126 GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID----KLNNTEFKGKKIRC-STSQA 180
G+V + + + ++GF FV F+ E K +D KLN K+ + T +
Sbjct: 119 GDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 178
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
++F+G + + E +++ G V +EL D K ++ RGF FI +
Sbjct: 179 VKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNK-TNKRRGFCFITF 228
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 168 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 228 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 269
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 160 (61.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 42/161 (26%), Positives = 83/161 (51%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N ++ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
A+ + + KL T VS+A P SS + + +YV LP+ ++Q ++++L
Sbjct: 91 NDADKAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 144 (55.7 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 41/169 (24%), Positives = 85/169 (50%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + + SIG++ ++++ K + ++ G+ FV + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + + K I+ S S A R L++ +P+ ++++++ S+ G +T LV
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWAD 263
+ S RG FI + AE + + + N LG P TV +A+
Sbjct: 159 DQVTGVS--RGVGFIRFDKRIEAEEAIKGL-NGQKPLGAAEPITVKFAN 204
Score = 51 (23.0 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 17/65 (26%), Positives = 25/65 (38%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
++V NL + L +LF G +T V V + GFV A A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 338 EKYEL 342
Y L
Sbjct: 346 NGYRL 350
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 160 (61.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 42/161 (26%), Positives = 83/161 (51%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N ++ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
A+ + + KL T VS+A P SS + + +YV LP+ ++Q ++++L
Sbjct: 91 NDADKAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 144 (55.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 41/169 (24%), Positives = 85/169 (50%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + + SIG++ ++++ K + ++ G+ FV + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + + K I+ S S A R L++ +P+ ++++++ S+ G +T LV
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWAD 263
+ S RG FI + AE + + + N LG P TV +A+
Sbjct: 159 DQVTGVS--RGVGFIRFDKRIEAEEAIKGL-NGQKPLGAAEPITVKFAN 204
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 160 (61.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 42/161 (26%), Positives = 83/161 (51%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N ++ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
A+ + + KL T VS+A P SS + + +YV LP+ ++Q ++++L
Sbjct: 91 NDADKAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 144 (55.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 41/169 (24%), Positives = 85/169 (50%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + + SIG++ ++++ K + ++ G+ FV + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + + K I+ S S A R L++ +P+ ++++++ S+ G +T LV
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWAD 263
+ S RG FI + AE + + + N LG P TV +A+
Sbjct: 159 DQVTGVS--RGVGFIRFDKRIEAEEAIKGL-NGQKPLGAAEPITVKFAN 204
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 160 (61.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 42/161 (26%), Positives = 83/161 (51%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N ++ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
A+ + + KL T VS+A P SS + + +YV LP+ ++Q ++++L
Sbjct: 91 NDADKAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILLDQATGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 139 (54.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 40/169 (23%), Positives = 84/169 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + + SIG++ ++++ K + ++ G+ FV + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + + K I+ S S A R L++ +P+ ++++++ S+ G +T L+
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILL 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWAD 263
S RG FI + AE + + + N LG P TV +A+
Sbjct: 159 DQATGVS--RGVGFIRFDKRIEAEEAIKGL-NGQKPLGAAEPITVKFAN 204
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 160 (61.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 42/161 (26%), Positives = 83/161 (51%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N ++ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
A+ + + KL T VS+A P SS + + +YV LP+ ++Q ++++L
Sbjct: 91 NDADKAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILLDQATGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 139 (54.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 40/169 (23%), Positives = 84/169 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + + SIG++ ++++ K + ++ G+ FV + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + + K I+ S S A R L++ +P+ ++++++ S+ G +T L+
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILL 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWAD 263
S RG FI + AE + + + N LG P TV +A+
Sbjct: 159 DQATGVS--RGVGFIRFDKRIEAEEAIKGL-NGQKPLGAAEPITVKFAN 204
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 160 (61.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 42/161 (26%), Positives = 83/161 (51%)
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+T +K L + +P+N ++ + + +G + +LV+D K + + G+ F+ Y +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDP 90
Query: 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
A+ + + KL T VS+A P SS + + +YV LP+ ++Q ++++L
Sbjct: 91 NDADKAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQL 144
Query: 296 FEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
F +GRI T ++ G + +GF+ F +R A +A+K
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 145 (56.1 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 44/191 (23%), Positives = 94/191 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ + + SIG++ ++++ K + ++ G+ FV + + A KAI+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 162 KLNNTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + + K I+ S S A R L++ +P+ ++++++ S+ G +T LV
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV 158
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWADPRNVDSSGASQ 274
+ S RG FI + AE + + + N LG P TV +A+ + +G +
Sbjct: 159 DQVTGVS--RGVGFIRFDKRIEAEEAIKGL-NGQKPLGAAEPITVKFANNPS-QKTGQAL 214
Query: 275 VKAVYVKNLPR 285
+ +Y + R
Sbjct: 215 LTQLYQSSARR 225
Score = 53 (23.7 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 20/75 (26%), Positives = 29/75 (38%)
Query: 269 SSGASQVK-AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
S GA+ ++V NL + L +LF G +T V V + GFV
Sbjct: 277 SGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 336
Query: 328 SSAMKALKNTEKYEL 342
A A+ + Y L
Sbjct: 337 DEAAMAIASLNGYRL 351
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 145 (56.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 44/171 (25%), Positives = 83/171 (48%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++G IP SE L Q V EV I+K K + ++G F+ + E A K ++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 163 LNNTE-FKGKKIRCSTSQA-------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
+N + G A +++LF+G +P+N ++Q + S+ G + +++
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGT-IKDLQI 137
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL-GTNAP-TVSWAD 263
++ + +S +G AF++Y + A S + N K+ G+ P V WAD
Sbjct: 138 LRGAQQTS--KGCAFLKYETKEQA-VSAMESINGKHKMEGSTVPLVVKWAD 185
Score = 57 (25.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+++ N+PR +L F+ G + KV V A G K GFV + +++A A+
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKAT-GVSKC-FGFVSYDSQAAAQNAID 408
Query: 336 NTEKYELDG 344
L G
Sbjct: 409 MMNGRHLGG 417
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 149 (57.5 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 34/134 (25%), Positives = 65/134 (48%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID- 161
++++GG+ D S+ DL+D+ GEVT+ I ++ ++GF F+ F+ K ++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 162 ---KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+L+ KK ++F+G + E +++ E G + +EL D
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMDP 119
Query: 219 KNSSNNRGFAFIEY 232
K ++ RGF FI +
Sbjct: 120 K-TNKRRGFVFITF 132
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 158 (60.7 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 47/172 (27%), Positives = 86/172 (50%)
Query: 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
C + L + +P+N ++L+ + S +G V +L++D K + ++ G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKK 294
K AE R T +L + VS+A P SS + +Y+ LPRN+TQ ++
Sbjct: 71 AKDAE--RAINTLNGLRLQSKTIKVSYARP----SSEVIKDANLYISGLPRNMTQKDVED 124
Query: 295 LFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+F GRI ++V+V G + + F+ F +RS A +A+ + ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTT-GLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 151 (58.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 46/178 (25%), Positives = 84/178 (47%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +LR SIGEV ++++ K + + G+ FV + + A +AI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 162 KLNNTEFKGKKIRCSTSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S ++ L+I +PRN +D++ + S G + LV
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLV 139
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWADPRNVDSSGA 272
S RG AFI + AE + N + G++ P TV +A N + + A
Sbjct: 140 DQTTGLS--RGVAFIRFDKRSEAEEAITSF-NGHKPPGSSEPITVKFAANPNQNKNVA 194
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 163 (62.4 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 57/251 (22%), Positives = 105/251 (41%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YIG + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLF---IGNI-PRNWGSEDLQKVVSEVGPGVTGVELVKD 217
+N KG+ IR SQ L +GN+ +N K + + + K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--GASQV 275
+ + +RG+ F+ + + A + Q M L V R GA +
Sbjct: 131 VCDEYGSRGYGFVHFETQEAANRAIQTMNG--MLLNDRKVFVGHFKSRRERELEYGAKVM 188
Query: 276 KA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ VY+KN ++ +LK++F G V V G+ + GFV++ A KA
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRG-FGFVNYGNHEEAQKA 247
Query: 334 LKNTEKYELDG 344
+ E++G
Sbjct: 248 VTEMNGKEVNG 258
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 54/184 (29%), Positives = 79/184 (42%)
Query: 168 FKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK-NSSNNRG 226
FK ++ R AK F +N+G + K + E+ VK M NS +RG
Sbjct: 173 FKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRG 232
Query: 227 FAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVDSSGA-----SQVKA--- 277
F F+ Y NH E +++ +T N K + V A R ++ G Q+K
Sbjct: 233 FGFVNYGNH---EEAQKAVTEMNGKEVNGRMVYVGRAQKR-IERQGELKRKFEQIKQERI 288
Query: 278 -------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+YVKNL + D+L+K F +G IT V + G K GFV F+ A
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM-TEGGHSKG-FGFVCFSSPEEA 346
Query: 331 MKAL 334
KA+
Sbjct: 347 TKAV 350
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 163 (62.4 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 59/255 (23%), Positives = 107/255 (41%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
+V D S RG+ F+ + + A + Q M L V R G
Sbjct: 130 VVCDEHGS---RGYGFVHFETQEAANRAIQTMNG--MLLNDRKVFVGHFKSRRERELEYG 184
Query: 272 ASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A ++ VY+KN ++ +L+++F G V V G+ + GFV++
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRG-FGFVNYGNHEE 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ E++G
Sbjct: 244 AQKAVSEMNGKEVNG 258
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 159 (61.0 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 49/166 (29%), Positives = 82/166 (49%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
VY+GG+ SE L + G V V + K + ++ ++ + F+ +R+ E A AI L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 164 NNTEFKGKKIRCS-TSQAKY------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
N + GK IR + SQ K LFIGN+ + + L S G + ++++
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMR 146
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
D ++ N+RGF FI Y + + ++ + + MT L TVS+A
Sbjct: 147 D-PDTGNSRGFGFISYDSFEASDAAIESMTGQY--LSNRQITVSYA 189
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 156 (60.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID- 161
++++GG+ D S+ DL+D+ GEV + I ++ ++GF F+ F++ K +D
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 162 ---KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+L+ KK ++F+G + E +++ E G + +EL D
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMDP 189
Query: 219 KNSSNNRGFAFIEY 232
K S+ RGF FI +
Sbjct: 190 K-SNKRRGFVFITF 202
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++GG+ +A+E +R++ GE+ + + S++ +GF F+TF+ E K ++K
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 214
Query: 163 LNNTEFKGKKIRCSTSQAK 181
+T G K +Q K
Sbjct: 215 KFHT-ISGSKCEIKVAQPK 232
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 166 (63.5 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 62/258 (24%), Positives = 114/258 (44%)
Query: 86 DEKKKHAELLAL--PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENK 143
D AE +AL S V + +P +EH +R F + G + V++M G+D
Sbjct: 811 DRASVEAEPVALRRDRENSTVVVKNLPQGTTEHKVRQFFRDCGAINGVKMMPGEDGKSE- 869
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVS 203
A + F + A+ A + T F G I+ ++ LF+ N P ++ + S
Sbjct: 870 -VAMIEFNTRDDAAAAQTRDQKT-FDGNTIQVHFG-SETTLFVTNFPPTADENYIRDLFS 926
Query: 204 EVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
+ G + + +K +++ R F ++++ A +S + G + V +D
Sbjct: 927 KYGE-IIDIRF-PSLKYNTHRR-FCYLQFKT-SVAAHSALALDGSAVGNGLHL-VVKISD 981
Query: 264 P-RNVDSSGAS-QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
P R D +G + + ++V N+ + ++D LK+LF G + V +P G K G+
Sbjct: 982 PSRKQDRNGPIYEGREIHVSNVNWSASEDDLKELFSRFGTVELVRLPRKVDGGSKG-FGY 1040
Query: 322 VHFAERSSAMKALKNTEK 339
V F+ + A AL E+
Sbjct: 1041 VVFSSKEEATAALAMHEQ 1058
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 158 (60.7 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 44/172 (25%), Positives = 79/172 (45%)
Query: 71 DADAGKSGDMQIEDEDE-----KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSI 125
+A+ K D +EDE +H E +++IGG+ D ++ DL+D+
Sbjct: 60 EAEGAKI-DASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 118
Query: 126 GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID----KLNNTEFKGKKIRC-STSQA 180
G+V + + + ++GF FV F+ E K +D KLN K+ + T +
Sbjct: 119 GDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 178
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
++F+G + + E +++ G V +EL D K ++ RGF FI +
Sbjct: 179 VKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNK-TNKRRGFCFITF 228
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 168 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 228 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 269
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 158 (60.7 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 44/172 (25%), Positives = 79/172 (45%)
Query: 71 DADAGKSGDMQIEDEDE-----KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSI 125
+A+ K D +EDE +H E +++IGG+ D ++ DL+D+
Sbjct: 60 EAEGAKI-DASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 118
Query: 126 GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID----KLNNTEFKGKKIRC-STSQA 180
G+V + + + ++GF FV F+ E K +D KLN K+ + T +
Sbjct: 119 GDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 178
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
++F+G + + E +++ G V +EL D K ++ RGF FI +
Sbjct: 179 VKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNK-TNKRRGFCFITF 228
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 168 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 228 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 269
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 154 (59.3 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 37/135 (27%), Positives = 67/135 (49%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID- 161
+++IGG+ D ++ DL+D+ GEV + + + ++GF FV F+ E K +D
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 162 ---KLNNTEFKGKKIRC-STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
KLN K+ + T + ++F+G + + E +++ G V +EL D
Sbjct: 61 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGE-VESIELPMD 119
Query: 218 MKNSSNNRGFAFIEY 232
K ++ RGF FI +
Sbjct: 120 NK-TNKRRGFCFITF 133
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 25/107 (23%), Positives = 54/107 (50%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ + GEV + + +++ +GF F+T
Sbjct: 73 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFIT 132
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 133 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 174
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 153 (58.9 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 37/134 (27%), Positives = 66/134 (49%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
++IGG+ D ++ DL+D+ GEV + + + ++GF FV F+ E K +D
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 162 --KLNNTEFKGKKIRC-STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
KLN K+ + T + ++F+G + + E +++ G V +EL D
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGE-VESIELPMDN 119
Query: 219 KNSSNNRGFAFIEY 232
K ++ RGF FI +
Sbjct: 120 K-TNKRRGFCFITF 132
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 25/107 (23%), Positives = 54/107 (50%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ + GEV + + +++ +GF F+T
Sbjct: 72 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFIT 131
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 132 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 173
>UNIPROTKB|E1BIG5 [details] [associations]
symbol:DND1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060965 "negative regulation of gene silencing by
miRNA" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366 GO:GO:0017091
GO:GO:0007281 GO:GO:0060965 CTD:373863 OMA:KRECELW
EMBL:DAAA02020432 IPI:IPI00711336 RefSeq:NP_001180074.1
UniGene:Bt.87604 ProteinModelPortal:E1BIG5
Ensembl:ENSBTAT00000025092 GeneID:525516 KEGG:bta:525516
NextBio:20874184 Uniprot:E1BIG5
Length = 355
Score = 157 (60.3 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 44/169 (26%), Positives = 76/169 (44%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEV+IG +P D EH L Q +G + E R+M S N+GFA+ + + A
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112
Query: 158 KAIDKLNNTEFKGK--KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
AI L+N + + C +++ K L + +P L + + +GPG+ L+
Sbjct: 113 AAIATLHNHLLRPSCPLLVCRSTE-KCELSVDGLPPGLSHRALLRALQPLGPGLQEALLL 171
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
+ A +++ +H+ A +++ + L V W P
Sbjct: 172 PSPGPTPAQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 156 (60.0 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 47/172 (27%), Positives = 85/172 (49%)
Query: 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
C + L + +P+N E+L+ + S +G V +L++D K + ++ G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKK 294
K AE R T +L + VS+A P SS + +Y+ LPR +TQ ++
Sbjct: 71 AKDAE--RAISTLNGLRLQSKTIKVSYARP----SSEVIKDANLYISGLPRTMTQKDVED 124
Query: 295 LFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+F GRI ++V+V G + + F+ F +RS A +A+ + ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTT-GLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 145 (56.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 45/178 (25%), Positives = 82/178 (46%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +LR SIGEV ++++ K + + G+ FV + + A +AI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 162 KLNNTEFKGKKIRCSTSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S ++ L+I +PR +D++ + S G + LV
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWADPRNVDSSGA 272
S RG AFI + AE + N + G++ P TV +A N + + A
Sbjct: 140 DQTTGLS--RGVAFIRFDKRSEAEEAITSF-NGHKPPGSSEPITVKFAANPNQNKNMA 194
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 156 (60.0 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 47/172 (27%), Positives = 85/172 (49%)
Query: 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
C + L + +P+N E+L+ + S +G V +L++D K + ++ G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKK 294
K AE R T +L + VS+A P SS + +Y+ LPR +TQ ++
Sbjct: 71 AKDAE--RAISTLNGLRLQSKTIKVSYARP----SSEVIKDANLYISGLPRTMTQKDVED 124
Query: 295 LFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+F GRI ++V+V G + + F+ F +RS A +A+ + ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTT-GLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 145 (56.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 45/178 (25%), Positives = 82/178 (46%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ + + +P + ++ +LR SIGEV ++++ K + + G+ FV + + A +AI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 162 KLNNTEFKGKKIRCSTSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
LN + K I+ S ++ L+I +PR +D++ + S G + LV
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-TVSWADPRNVDSSGA 272
S RG AFI + AE + N + G++ P TV +A N + + A
Sbjct: 140 DQTTGLS--RGVAFIRFDKRSEAEEAITSF-NGHKPPGSSEPITVKFAANPNQNKNMA 194
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 154 (59.3 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID- 161
++++GG+ D S+ DL+D+ GEV + I ++ +KGF F+ F++ K +D
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 162 ---KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+L+ KK ++F+G + E +++ E G + +EL D
Sbjct: 125 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMDP 183
Query: 219 KNSSNNRGFAFIEY 232
K ++ RGF FI +
Sbjct: 184 K-TNKRRGFVFITF 196
Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++GG+ +A+E +R++ GE+ + + +++ +GF F+TF+ E K ++K
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK 208
Query: 163 LNNTEFKGKKIRCSTSQAK 181
+T G K +Q K
Sbjct: 209 KFHT-ISGSKCEIKVAQPK 226
>UNIPROTKB|D6RF41 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:28401
EMBL:AC009567 IPI:IPI00965528 ProteinModelPortal:D6RF41 SMR:D6RF41
Ensembl:ENST00000512640 ArrayExpress:D6RF41 Bgee:D6RF41
Uniprot:D6RF41
Length = 133
Score = 137 (53.3 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 33/77 (42%), Positives = 45/77 (58%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 158 KAIDKLNNTEFK-GKKI 173
AI LNN E + GK I
Sbjct: 116 LAIRILNNYEIRPGKFI 132
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 110 (43.8 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S + + G+P +E LR+F G+VT+V++MK K + E++ FAF+ +++ + A +A+
Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMK-KRNGESRKFAFIGYKSADAAERAVK 60
Query: 162 KLNNT 166
N +
Sbjct: 61 YFNKS 65
Score = 102 (41.0 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 81 QIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS 140
Q ++E E ++ ++I I ++ASE D R G + EV I +
Sbjct: 289 QSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTG 348
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK--YRL--F-IGNIP 190
++KGF +V F E A++A L+ F+G+ + + K +RL F + N+P
Sbjct: 349 KSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADKKKDHRLDEFDLKNLP 403
Score = 91 (37.1 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 39/147 (26%), Positives = 58/147 (39%)
Query: 207 PG--VTGVELVKDMKNSSN--NRGFAFIEYHNHKCAEYSRQKMTNP-----NFKLGTNAP 257
PG V V+ D KNS + GF F+E+ + A + + +L +
Sbjct: 641 PGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHK 700
Query: 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ ++ SG S + +KNLP T+ L +LF G++ V VP K Q
Sbjct: 701 QGTGTSASSIKKSGKSS--KIIIKNLPFEATRKDLLELFGAFGQLKSVRVPK-KFDQSAR 757
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDG 344
FV F A A+ E L G
Sbjct: 758 GFAFVEFNLMKEAETAMSQLEGVHLLG 784
Score = 79 (32.9 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K + VKN P T D++ +LF +G++ ++++PPA I + F + SA A
Sbjct: 493 KIILVKNFPFGTTIDEIGELFSAYGQLKRMLMPPA------GTIAIIEFRDAPSARAA 544
Score = 71 (30.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 13/68 (19%), Positives = 36/68 (52%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++++N+ +++ + LF +G + +V + + G+ K + +V F ++ A +A ++
Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFL-YVQFLKKEDATRAYRS 370
Query: 337 TEKYELDG 344
+K G
Sbjct: 371 LDKQIFQG 378
Score = 63 (27.2 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 24/73 (32%), Positives = 33/73 (45%)
Query: 277 AVYVKNLPRNVTQDQLKKLFEH-HGRITKVVV--P-PAKPGQEKNR-IGFVHFAERSSAM 331
AV+VKNL T L LF+ G + V P P G+ + GFV F + A
Sbjct: 618 AVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQAN 677
Query: 332 KALKNTEKYELDG 344
A+ + + LDG
Sbjct: 678 VAISTLDGHVLDG 690
Score = 60 (26.2 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
RLFI NI ED + + S+ G + V + D + + ++GF ++++
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYG-ALEEVHIAIDTR-TGKSKGFLYVQF 358
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 150 (57.9 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 52/200 (26%), Positives = 94/200 (47%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P ++++G +P E LR+ + G V + +++ K + +KG FVTF A K
Sbjct: 354 PDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALK 413
Query: 159 AIDKLNNTE-FKGK------KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
A D L+N + G K S ++ + +LF+G + + D++K+ EV +
Sbjct: 414 AQDALHNVKTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLF-EVHGAIEE 472
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL--GTNAP-TVSWADP-RNV 267
+++D S +G AF+ + K A S K+T K+ G +P V +AD +
Sbjct: 473 CTVLRDQNGQS--KGCAFVTFAT-KHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKEK 529
Query: 268 DSSGASQVKAVYVKNLPRNV 287
+ Q++A + NL N+
Sbjct: 530 EQKKIQQIQA-NLWNLASNI 548
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 39/155 (25%), Positives = 78/155 (50%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
++F+G +P++ L+++ E G V + +++D K + ++G F+ ++ A ++
Sbjct: 358 KMFVGQVPKSMDESQLREMFEEYG-AVHSINVLRD-KATGISKGCCFVTFYTRHAALKAQ 415
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
+ N G P + DS ++ K ++V L + + ++ ++KLFE HG I
Sbjct: 416 DALHNVKTLNGMYHPI----QMKPADSENRNERK-LFVGMLNKKLNENDVRKLFEVHGAI 470
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+ V + GQ K FV FA + +A+ A+K T
Sbjct: 471 EECTVLRDQNGQSKG-CAFVTFATKHAAISAIKVT 504
Score = 55 (24.4 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 16/65 (24%), Positives = 26/65 (40%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+++ +LP+ T L F G + V K GFV F SA A+K
Sbjct: 728 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 787
Query: 338 EKYEL 342
+++
Sbjct: 788 NGFQV 792
>UNIPROTKB|Q3ZBP3 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:BC103186 IPI:IPI00696485
RefSeq:NP_001030438.1 UniGene:Bt.44980 UniGene:Bt.91245 HSSP:P29558
ProteinModelPortal:Q3ZBP3 SMR:Q3ZBP3 PRIDE:Q3ZBP3
Ensembl:ENSBTAT00000006826 GeneID:526135 KEGG:bta:526135 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
InParanoid:Q3ZBP3 OMA:THVQTAA OrthoDB:EOG469QV2 NextBio:20874311
Uniprot:Q3ZBP3
Length = 403
Score = 157 (60.3 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 35/136 (25%), Positives = 68/136 (50%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YI G+P + ++ DL CQ G++ + + K +++ KG+ FV F + A KA+
Sbjct: 62 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 121
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L + + + + Q L+I N+P + ++L+ ++ G V +++D +
Sbjct: 122 ALKASGVQAQMAK-QQEQDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDSSGT 179
Query: 222 SNNRGFAFIEYHNHKC 237
S GFA +E KC
Sbjct: 180 SRGVGFARME-STEKC 194
>UNIPROTKB|E2RM13 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:AAEX03017702
EMBL:AAEX03017703 Ensembl:ENSCAFT00000015804 Uniprot:E2RM13
Length = 404
Score = 157 (60.3 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 35/136 (25%), Positives = 68/136 (50%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YI G+P + ++ DL CQ G++ + + K +++ KG+ FV F + A KA+
Sbjct: 60 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 119
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L + + + + Q L+I N+P + ++L+ ++ G V +++D +
Sbjct: 120 ALKASGVQAQMAK-QQEQDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDSSGT 177
Query: 222 SNNRGFAFIEYHNHKC 237
S GFA +E KC
Sbjct: 178 SRGVGFARME-STEKC 192
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 144 (55.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G V++M +S ++KG
Sbjct: 142 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 200
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 201 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 237
Score = 107 (42.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 47/183 (25%), Positives = 82/183 (44%)
Query: 168 FKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGVTGVELVKDMKNSSN 223
FK +K R + A+ + F +N+G E L+ + + GP ++ V+++ D S
Sbjct: 141 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD--ESGK 197
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNP--NFK---LGTNAPTVSWADP--RNVDSSGASQVK 276
++GF F+ + H+ A+ + +M N K +G V R + ++
Sbjct: 198 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 257
Query: 277 A-----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+YVKNL + ++L+K F G IT V + G+ K GFV F+ A
Sbjct: 258 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKG-FGFVCFSSPEEAT 315
Query: 332 KAL 334
KA+
Sbjct: 316 KAV 318
Score = 105 (42.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 34/129 (26%), Positives = 55/129 (42%)
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--GA--SQV 275
+ + ++G+ F+ + + AE + +KM L V R + GA +
Sbjct: 101 DENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGARAKEF 158
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
VY+KN ++ ++LK LF G V V + G+ K GFV F A KA+
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKAVD 217
Query: 336 NTEKYELDG 344
EL+G
Sbjct: 218 EMNGKELNG 226
Score = 99 (39.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQ 179
+N KGK +R SQ
Sbjct: 71 TMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|E2RMT9 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:AAEX03017702 EMBL:AAEX03017703 Ensembl:ENSCAFT00000015788
NextBio:20854045 Uniprot:E2RMT9
Length = 420
Score = 157 (60.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 35/136 (25%), Positives = 68/136 (50%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YI G+P + ++ DL CQ G++ + + K +++ KG+ FV F + A KA+
Sbjct: 63 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 122
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L + + + + Q L+I N+P + ++L+ ++ G V +++D +
Sbjct: 123 ALKASGVQAQMAK-QQEQDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDSSGT 180
Query: 222 SNNRGFAFIEYHNHKC 237
S GFA +E KC
Sbjct: 181 SRGVGFARME-STEKC 195
>DICTYBASE|DDB_G0279539 [details] [associations]
symbol:DDB_G0279539 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279539 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000031 eggNOG:COG1404
RefSeq:XP_001732991.1 ProteinModelPortal:B0G128
EnsemblProtists:DDB0234241 GeneID:8622096 KEGG:ddi:DDB_G0279539
OMA:MSKDEND Uniprot:B0G128
Length = 373
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/251 (22%), Positives = 119/251 (47%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V++ I ++ L++ IG+V E ++K K S E KG+ FV F ++ A AI+
Sbjct: 12 VFVSDIARGVTDEQLKEEFSKIGDVLEAVVVKNKHSGETKGYGFVKFYHMADAQHAIETP 71
Query: 164 NNTEFK----GKK--IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
N FK GK ++ + + +K L+IG+IP+ ++++ + E+G + +K
Sbjct: 72 NPPLFKDGITGKPQMVKVTLADSKNTLYIGHIPKGLTEKEVRAELEEIG-----MCTLKS 126
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA 277
+ ++ + + ++ +H+ + + + + T + T S R+ D + K
Sbjct: 127 FEFDGPSKLYGYAQFKDHETTIKAIKSIQKSKY---TASLTPS---KRSNDDGKSPTTKV 180
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIG--FVHFAERSSAMKA 333
++V+ + +QD+ + L + G I K+VVP Q+K +G F++ S A
Sbjct: 181 LFVRGIR---SQDEGELLRKQLGPELIEKIVVP--LDSQKKTPLGHAFIYCNSTSDAKII 235
Query: 334 LKNTEKYELDG 344
+ + ++ G
Sbjct: 236 MDHNHDFDFMG 246
Score = 128 (50.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 36/159 (22%), Positives = 79/159 (49%)
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
+Y +F+ +I R E L++ S++G + V +VK+ K+S +G+ F+++++ A++
Sbjct: 9 EYGVFVSDIARGVTDEQLKEEFSKIGDVLEAV-VVKN-KHSGETKGYGFVKFYHMADAQH 66
Query: 241 SRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
+ + P FK G P+ V + A +Y+ ++P+ +T+ +++ E G
Sbjct: 67 AIETPNPPLFKDGITGK------PQMVKVTLADSKNTLYIGHIPKGLTEKEVRAELEEIG 120
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
T P + G+ F + + +KA+K+ +K
Sbjct: 121 MCTLKSFEFDGPSK---LYGYAQFKDHETTIKAIKSIQK 156
>FB|FBgn0035526 [details] [associations]
symbol:CG1316 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P11940 eggNOG:NOG145324
OMA:DIWVVKD GeneTree:ENSGT00680000100059 EMBL:BT001728
RefSeq:NP_647887.1 UniGene:Dm.14909 SMR:Q9VZE4 IntAct:Q9VZE4
MINT:MINT-906283 EnsemblMetazoa:FBtr0073233 GeneID:38526
KEGG:dme:Dmel_CG1316 UCSC:CG1316-RA FlyBase:FBgn0035526
InParanoid:Q9VZE4 OrthoDB:EOG4KKWJ8 GenomeRNAi:38526 NextBio:809099
Uniprot:Q9VZE4
Length = 470
Score = 141 (54.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 43/136 (31%), Positives = 70/136 (51%)
Query: 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-- 171
+E D R+ GE+ ++ ++K K + ENKG A+V F A+KA +++N GK
Sbjct: 39 TEEDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTI-GKMD 97
Query: 172 ---KI-----------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
K+ + Q KY RLFI IP+ ED+++ S+ G V V +VK
Sbjct: 98 RTLKVLVAANRNQGSNKSENEQEKYVRLFIV-IPKTATEEDIREEFSQWGD-VESVTIVK 155
Query: 217 DMKNSSNNRGFAFIEY 232
+ KN+ N +GF ++ +
Sbjct: 156 E-KNNGNPKGFGYVRF 170
Score = 58 (25.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/88 (29%), Positives = 38/88 (43%)
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
PT A P D A ++ V NLP ++ LK +F + V + P K
Sbjct: 369 PTQPLASP---DDQVAQRLFIVLSANLPHSI----LKNIFSCWSGLIDVYLLP-----NK 416
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDG 344
N G+V +AE SA A++ E+ G
Sbjct: 417 N-CGYVKYAEVESAQLAIRTLNGAEICG 443
Score = 41 (19.5 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 253 GTNAPTVSWADPRNVDSSGASQVKAVYVK-------NLPRNVTQDQLKKLFE 297
G+N+ W +N D + +++ V V N+ V QDQL +LF+
Sbjct: 236 GSNSYNNDWNVSQNNDMAAFLRMQNVPVAQPSCLEVNVSNCVNQDQLWRLFD 287
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++GG+ + E L D S G ++EV ++K +++ ++GF F+TF N E AS A+
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 163 LNNTEFKGKKIR 174
+N G++IR
Sbjct: 67 MNGESLDGRQIR 78
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++GG+ + E L D S G ++EV ++K +++ ++GF F+TF N E AS A+
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 163 LNNTEFKGKKIR 174
+N G++IR
Sbjct: 67 MNGESLDGRQIR 78
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 59/213 (27%), Positives = 93/213 (43%)
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGS 195
G+A+V F+ A +A+D +N KGK +R SQ L FI N+ ++ +
Sbjct: 8 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 67
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+ L S G + ++V D +N S +G+ F+ + + AE + +KM L
Sbjct: 68 KALYDTFSAFG-NILSCKVVCD-ENGS--KGYGFVHFETQEAAERAIEKMNG--MLLNDR 121
Query: 256 APTVSWADPRNVDSS--GA--SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
V R + GA + VY+KN ++ ++LK LF G V V +
Sbjct: 122 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 181
Query: 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
G+ K GFV F A KA+ EL+G
Sbjct: 182 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNG 213
Score = 144 (55.7 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI D + L+D G V++M +S ++KG
Sbjct: 129 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 187
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 188 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 224
Score = 117 (46.2 bits), Expect = 0.00058, P = 0.00058
Identities = 37/156 (23%), Positives = 73/156 (46%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + +++ D + +KG+ FV F E A +AI+K+
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 113
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + A+ + F +N+G E L+ + + GP +
Sbjct: 114 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 173
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245
+ V+++ D S ++GF F+ + H+ A+ + +M
Sbjct: 174 S-VKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM 206
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 160 (61.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 72/331 (21%), Positives = 129/331 (38%)
Query: 19 KPVGSDEKVDFDEDNDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADAGKSG 78
K SDE D D+D D D + +
Sbjct: 140 KKEDSDEDEDDDDDEDDSDEDEEDEEEDEFEPPVVKGKQGKVAAAAPASEDEDEEEDEEE 199
Query: 79 DMQIEDEDEKKKHAELLALPP-HGSEVYIGGIPHDA---SEHDLRDFCQSIGEVTEVRIM 134
+ + E+E++ + E + + P G + +P A +E D D + E +
Sbjct: 200 EEEDEEEEDDSEEEEAMEITPAKGKKAPAKVVPVKAKNVAEEDDDDEEEDEDEEEDEEEE 259
Query: 135 KGKDSSENKGFAFVTFRNVELASKAIDKLNNT-EFKGKKIRCSTSQAKYRLFIGNIPRNW 193
+ ++ E + K + K E K +K+ S S + LFIGN+ N
Sbjct: 260 EDEEEEEEEEEEEPVKPAPGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNK 319
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253
+L+ +SE P V D++ +N R F ++++ + AE + + K+
Sbjct: 320 SVAELKVAISE--PFAKNDLAVVDVRTGTN-RKFGYVDFES---AEDLEKALELTGLKVF 373
Query: 254 TNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
N + P+ DS + + KNL N+T+D+LK++FE I V ++ G
Sbjct: 374 GNE--IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDG 427
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+ K I ++ F + A K L+ + E+DG
Sbjct: 428 KSKG-IAYIEFKSEADAEKNLEEKQGAEIDG 457
Score = 146 (56.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 56/245 (22%), Positives = 108/245 (44%)
Query: 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173
+E +L++ + + E+R++ ++KG A++ F++ A K +++ E G+ +
Sbjct: 406 TEDELKEVFE---DALEIRLVS--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 460
Query: 174 RCS-TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL---------VKDMKNSSN 223
T + R W E V+S + T L +K +N
Sbjct: 461 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQG 520
Query: 224 -NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV--SWADPRNVDSSGASQVKAVYV 280
++G+AFIE+ + E +++ + + N K+ T+ PR ++ + K ++V
Sbjct: 521 KSKGYAFIEFASF---EDAKEALNSCN-KMEIEGRTIRLELQGPRGSPNARSQPSKTLFV 576
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
K L + T++ LK+ FE G + +V + G K GFV F A A + E
Sbjct: 577 KGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDG 633
Query: 341 ELDGD 345
E+DG+
Sbjct: 634 EIDGN 638
Score = 131 (51.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 40/177 (22%), Positives = 88/177 (49%)
Query: 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165
+ + + A+E L++ + + T +++ + + ++KG+AF+ F + E A +A++ N
Sbjct: 490 LSNLSYSATEETLQEVFE---KATFIKVPQNQQG-KSKGYAFIEFASFEDAKEALNSCNK 545
Query: 166 TEFKGKKIRC----------STSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVEL 214
E +G+ IR + SQ LF+ + SED ++ + E G +
Sbjct: 546 MEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGL-----SEDTTEETLKESFEGSVRARI 600
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
V D + S+ +GF F+++++ + A+ +++ M + ++ N T+ WA P+ G
Sbjct: 601 VTDRETGSS-KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGGFG 654
Score = 41 (19.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 4 EMESASAAAEPVELEKPVGSDEK 26
E+ ++LEKP G D K
Sbjct: 366 ELTGLKVFGNEIKLEKPKGRDSK 388
>UNIPROTKB|F1RGE0 [details] [associations]
symbol:DND1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060965 "negative regulation of gene silencing by
miRNA" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366 GO:GO:0017091
GO:GO:0007281 GO:GO:0060965 CTD:373863 OMA:KRECELW EMBL:CU459055
RefSeq:XP_003124091.1 UniGene:Ssc.54455 Ensembl:ENSSSCT00000015704
GeneID:100520423 KEGG:ssc:100520423 Uniprot:F1RGE0
Length = 353
Score = 155 (59.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 44/169 (26%), Positives = 75/169 (44%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEV+IG +P D EH L Q +G + E R+M S N+GFA+ + + A
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112
Query: 158 KAIDKLNNTEFKGK--KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
AI L+N + + C +++ K L + +P L + +GPG+ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPGLSRRALLLALQPLGPGLQEALLL 171
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
+ A +++ +H+ A +++ + L V W P
Sbjct: 172 PSPGPAPAQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 50/201 (24%), Positives = 90/201 (44%)
Query: 74 AGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRI 133
A + GD ++ E K G +++IGG+ D S+ DL D+ GEV + I
Sbjct: 3 AEEQGDFSTDEFPEGSKINASKNQEDDG-KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTI 61
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI---RCSTSQAKY---RLFIG 187
+ ++GF FV F++ E + ++ L + GK I R + K ++F+G
Sbjct: 62 KTDPLTGRSRGFGFVLFKDAESVDRVLE-LTEHKLDGKLIDPKRAKAIKGKEPPKKVFVG 120
Query: 188 NIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247
+ + E L++ G + +EL D K ++ RGF F+ + E QK+
Sbjct: 121 GLSPDITEEQLREYFGVYGE-IESIELPTDTK-TNERRGFCFVTF----ALEEPVQKLLE 174
Query: 248 PNF-KLGTNAPTVSWADPRNV 267
+ ++G+ + A P+ V
Sbjct: 175 NRYHQIGSGKCEIKVAQPKEV 195
Score = 123 (48.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 46/173 (26%), Positives = 76/173 (43%)
Query: 167 EF-KGKKIRCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNN 224
EF +G KI S +Q ++FIG + + +DL +S G + +K + +
Sbjct: 13 EFPEGSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCT--IKTDPLTGRS 70
Query: 225 RGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS-SGASQVKAVYVKNL 283
RGF F+ + K AE + + KL DP+ + G K V+V L
Sbjct: 71 RGFGFVLF---KDAESVDRVLELTEHKLDGKL-----IDPKRAKAIKGKEPPKKVFVGGL 122
Query: 284 PRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++T++QL++ F +G I + +P E+ FV FA K L+N
Sbjct: 123 SPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN 175
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 122 (48.0 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 29/107 (27%), Positives = 58/107 (54%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++ G+P+ +E +L + G+++EV ++ KD+ +G AFV + E A A+DKL
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 288
Query: 164 NNTEFKGKKIRCSTSQ-----AKYRLFIGNIPRNWGSE-DLQKVVSE 204
+ F+G+ + ++ AK N+P+++ E + Q+ SE
Sbjct: 289 DKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPKSFKKEREEQRKASE 335
Score = 85 (35.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S + + +P +E LR GE+T+V++ + D ++ FA++ FR+ + A AI
Sbjct: 4 SRIIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSDG-RSRQFAYIGFRSEQKAQDAIT 62
Query: 162 KLNNTEFK 169
N FK
Sbjct: 63 YFNKN-FK 69
Score = 82 (33.9 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 251 KLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA 310
K G ++ R D S+ + VK+LP T+ +L ++F G + K+V+PP
Sbjct: 397 KAGVRVTSLEEFAARKGDVKNRSK-HILLVKHLPFASTEKELAQMFRKFGSLDKIVLPPT 455
Query: 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341
K + F+ AE +AM L T +Y+
Sbjct: 456 KT---MALVVFLEAAEARAAMNGLAYT-RYK 482
Score = 77 (32.2 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
RLF+ +P + E+L + S+ G ++ V LV D K++ + RG AF+ Y + A+ +
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGD-ISEVHLVLD-KDTRSCRGMAFVLYLIPESAKMAM 285
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQ 291
K+ F+ G + A PR + A QV NLP++ +++
Sbjct: 286 DKLDKLPFQ-GRTLHILP-AKPR---AMSAKQVDNS--SNLPKSFKKER 327
Score = 39 (18.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 73 DAGKSGDMQIEDEDEKKKH 91
DA GD QI+ +D + H
Sbjct: 91 DAYAKGDKQIQKKDPEVDH 109
>UNIPROTKB|E7ETU5 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 EMBL:AC104598 EMBL:AC131754 IPI:IPI00033611
HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105 SMR:E7ETU5
Ensembl:ENST00000409075 Ensembl:ENST00000409289
Ensembl:ENST00000409972 Uniprot:E7ETU5
Length = 370
Score = 155 (59.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YI G+P ++ DL CQ G++ + + K +++ KG+ FV F + A KA+
Sbjct: 29 TNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 88
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L + + + + Q L+I N+P + ++L+ ++ G V +++D +
Sbjct: 89 ALKASGVQAQMAK-QQEQDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDSSGT 146
Query: 222 SNNRGFAFIEYHNHKC 237
S GFA +E KC
Sbjct: 147 SRGVGFARME-STEKC 161
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 153 (58.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 37/135 (27%), Positives = 67/135 (49%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID- 161
+++IGG+ D ++ DL+D+ GEV + + + ++GF FV F+ E K +D
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 162 ---KLNNTEFKGKKIRC-STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
KLN K+ + T + ++F+G + + E +++ G V +EL D
Sbjct: 106 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMD 164
Query: 218 MKNSSNNRGFAFIEY 232
K ++ RGF FI +
Sbjct: 165 NK-TNKRRGFCFITF 178
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 25/107 (23%), Positives = 53/107 (49%)
Query: 90 KHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
K A+ + ++++GG+ D E +R++ GEV + + +++ +GF F+T
Sbjct: 118 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 177
Query: 150 FRNVELASKAIDK-LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
F+ E K ++K +N +I+ + S+ +Y+ + WGS
Sbjct: 178 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-----QQQWGS 219
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 151 (58.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 35/136 (25%), Positives = 66/136 (48%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YI G+P ++ DL CQ G++ + + K++++ KG+ FV F + A KA+
Sbjct: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L + + + Q L+I N+P + ++L+ ++ G V +++D
Sbjct: 121 SLKANGVQAQMAK-QQEQDPTNLYISNLPISMDEQELENMLKPFGH-VISTRILRDANGV 178
Query: 222 SNNRGFAFIEYHNHKC 237
S GFA +E KC
Sbjct: 179 SRGVGFARME-STEKC 193
WARNING: HSPs involving 916 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 346 311 0.00080 116 3 11 23 0.48 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1166
No. of states in DFA: 607 (65 KB)
Total size of DFA: 213 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.90u 0.14s 28.04t Elapsed: 00:00:01
Total cpu time: 27.95u 0.14s 28.09t Elapsed: 00:00:01
Start: Fri May 10 19:20:00 2013 End: Fri May 10 19:20:01 2013
WARNINGS ISSUED: 2