BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019068
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 390 EMNGKDLEGEN 400
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 390 EMNGKDLEGEN 400
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 336 NTEKYELDGDH 346
+L+G++
Sbjct: 300 EMNGKDLEGEN 310
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 134/239 (56%), Gaps = 10/239 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 138/253 (54%), Gaps = 12/253 (4%)
Query: 96 ALPP-HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKV 107
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
+ + + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
S VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 280
Query: 332 KALKNTEKYELDG 344
+A+K LDG
Sbjct: 281 EAMKALNGKVLDG 293
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 138/253 (54%), Gaps = 12/253 (4%)
Query: 96 ALPP-HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKL 107
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
+ + + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
S VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 280
Query: 332 KALKNTEKYELDG 344
+A+K LDG
Sbjct: 281 EAMKALNGKVLDG 293
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 337 TEKYELDGD 345
EL+G
Sbjct: 301 LNGTELEGS 309
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 337 TEKYELDGD 345
EL+G
Sbjct: 301 LNGTELEGS 309
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 134/249 (53%), Gaps = 13/249 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFVT+ + A +A+
Sbjct: 72 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVTYCHKGEAKRAV 130
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 131 RELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 190
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 191 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 250
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHFA R A+ A+ +
Sbjct: 251 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVLAMNS 302
Query: 337 TEKYELDGD 345
EL+G
Sbjct: 303 LNGTELEGS 311
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 131/249 (52%), Gaps = 19/249 (7%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G + E R+M + S EN+G+AFV + E A +AI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQL 104
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L+N E + GK I S RLFIG+IP++ E++Q+ + +V GV V + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGFAF+EY +HK A +R+K+ F+L + V WA+P + +D +V+ +YV
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYV 224
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKALK 335
+NL + T++ L+ F KPG ++ F+HF R A+ AL+
Sbjct: 225 RNLMLSTTEETLRSEFSQ-----------LKPGSVERVKKLTDYAFIHFYNREDALTALE 273
Query: 336 NTEKYELDG 344
+ +DG
Sbjct: 274 SMNGKVIDG 282
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 136/251 (54%), Gaps = 11/251 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGD 345
K LDG
Sbjct: 284 KALNGKVLDGS 294
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 264 PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
P DS+ + +++ LPR++ +D+L L E G+I ++ + G + FV
Sbjct: 44 PPGWDSTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVT 102
Query: 324 FAERSSAMKALKNTEKYEL 342
F+ + A A+K YE+
Sbjct: 103 FSNKQEAKNAIKQLNNYEI 121
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 136/251 (54%), Gaps = 11/251 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGD 345
K LDG
Sbjct: 284 KALNGKVLDGS 294
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 13/249 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T++ +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 337 TEKYELDGD 345
EL+G
Sbjct: 301 LNGTELEGS 309
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 126/250 (50%), Gaps = 19/250 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKAL 334
V+NL + T++ +K F KPG ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 13/249 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T++ +K+ F G + +V ++ FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEETIKRSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 337 TEKYELDGD 345
EL+G
Sbjct: 301 LNGTELEGS 309
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 126/250 (50%), Gaps = 19/250 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKAL 334
V+NL + T++ +K F KPG ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFSKF-----------KPGAVERVKKLRDYAFVHFFHREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 126/250 (50%), Gaps = 19/250 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKAL 334
V+NL + T++ +K F KPG ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGKCIDG 298
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 127/250 (50%), Gaps = 19/250 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E L G++ E R+M + S EN+G+AFV + N E A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMM-EFSGENRGYAFVMYTNKEEALLAIR 119
Query: 162 KLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E +GK I S RLFIG+IP+ E++ + + +V GV V + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+ Y +H+ A +R+K+ F+L + V+WA P + VD +VK +Y
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEETMQKVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKAL 334
V+NL + T++ +K F + KPG ++ FVHF R A+ A+
Sbjct: 240 VRNLMMSTTEETIKAEFNRY-----------KPGVVERVKKIRDYAFVHFFRRDYAIAAM 288
Query: 335 KNTEKYELDG 344
+DG
Sbjct: 289 SVMNGRLIDG 298
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 19/249 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P S +Y+G + + SE L + +G V+ +R+ + ++ + +A+V + N A +
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D LNNT +GK R SQ L FI N+ + + L S G +
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-NIL 125
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++V D NSS +GF F+ Y + A+ + K+ + N V ++
Sbjct: 126 SCKVVTDDGNSS--KGFGFVHYETQESADKAIAKVNG----MMINGQKVFVGPFKSSKER 179
Query: 271 G-ASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
G ++VK V+ KNL +V DQLK+L + +G IT + + G+ K GF +F
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKG-FGFANFESA 238
Query: 328 SSAMKALKN 336
+A ++N
Sbjct: 239 EAAKNVVEN 247
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 30/246 (12%)
Query: 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167
GI H A L D + G + +++ D + +KGF FV + E A KAI K+N
Sbjct: 108 GIDHKA----LYDTFSAFGNILSCKVVT-DDGNSSKGFGFVHYETQESADKAIAKVNGMM 162
Query: 168 FKGKKI----------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
G+K+ R ++ K+ +F N+ + G + L++++ + G +T + ++
Sbjct: 163 INGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE-ITNITIMA 221
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG----- 271
D K S GFA N + AE ++ + N N K+ P + + ++
Sbjct: 222 DDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHT 276
Query: 272 ---ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
Q +Y+KN+ ++ D+L+++F G IT +V GFV +
Sbjct: 277 FETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPD 336
Query: 329 SAMKAL 334
A +A+
Sbjct: 337 EATRAV 342
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L ++ ++VG V+ + + +D N+ + +A++ Y+N AE +
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGL-VSNIRVCRD-TNTRRSLSYAYVNYYNGADAERALD 69
Query: 244 KMTNPNFKLGTNAPTVSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301
+ N + A + W+ DP S S V V++KNL + + L F G
Sbjct: 70 TLNNTPIR--GKACRIMWSQRDP----SLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGN 123
Query: 302 I--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
I KVV G GFVH+ + SA KA+ ++G
Sbjct: 124 ILSCKVVT---DDGNSSKGFGFVHYETQESADKAIAKVNGMMING 165
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI I LR+ G +T +MK ++ +KGF FV + + A++A
Sbjct: 282 QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRA 341
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N K + + +Q K
Sbjct: 342 VTEMNGRMIGTKPLYVALAQRK 363
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 18/256 (7%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+ +Y+G + SE L D IG V+ +R+ + ++ + G+A+V F + E KAI
Sbjct: 37 GASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAI 96
Query: 161 DKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
++LN T KGK R SQ ++I N+ ++ L + S G +
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
++ D S RGF F+ + N A + + + + V+ + S
Sbjct: 156 KVATDENGVS--RGFGFVHFENESDARDAIEAVD--GMLMNDQEVYVALHVSKKDRQSKL 211
Query: 273 SQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+VKA VYVKN+ + +Q++ ++LF +G+IT V+ G+ + GFV+F + +
Sbjct: 212 EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRG-FGFVNFEDHA 270
Query: 329 SAMKALKNTEKYELDG 344
+A KA+ + E G
Sbjct: 271 AAAKAVDELNELEFKG 286
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 28/155 (18%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ I + S+ + + G++T +++ + +GF FV F + A+KA+D
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 162 KLNNTEFKGKKIRCSTSQAKY------------------------RLFIGNIPRNWGSED 197
+LN EFKG+K+ +Q KY LF+ N+ + E
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ + G +T ++++D + N+RGF F+ +
Sbjct: 338 LKEEFAPFGT-ITSAKVMRD--ETGNSRGFGFVCF 369
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + + L++ G +T ++M+ ++ ++GF FV F E A+KA
Sbjct: 320 QGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMR-DETGNSRGFGFVCFSTPEEATKA 378
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I + N GK + + +Q K
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRK 400
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 17/254 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 128 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 184
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ VY+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 331 MKALKNTEKYELDG 344
KA++ +++G
Sbjct: 244 KKAVEEMNGRDING 257
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 35/258 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 164 NNTEFKGKKI----------RCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N KG K+ R + ++K F +N+G E L+ V S+ G +
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 210 TGVELVKDMKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 274 ELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 332
Query: 317 NRIGFVHFAERSSAMKAL 334
G + F+ A KA+
Sbjct: 333 G-FGLICFSSPEDATKAM 349
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + + VYI D + L+D G+ V++M S ++KG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKG 231
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F + E A KA++++N + G+ I +Q K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
+L+I N+ E L+ S G + VK M+ ++GF I + + E
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---PED 344
Query: 241 SRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ +++ A
Sbjct: 345 ATKAMTEMNGRILGSKPLSIALA 367
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 18/253 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G V VR+ + + + G+ +V F N + A++AI
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN GK IR S +FI N+ + + L S G + +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSCK 154
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D +S ++G+ F++Y N + A+ + +K+ L V R S A+
Sbjct: 155 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLN--GMLLNDKQVYVGPFLRRQERDSTAN 210
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
+ K VYVKNL + T D LK F +G+IT VV K G+ K++ GFV+F A
Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENADDA 268
Query: 331 MKALKNTEKYELD 343
+A+++ ++ D
Sbjct: 269 ARAVESLNGHKFD 281
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 29/255 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D S G + ++ S ++KG+ FV + N E A KAI+KL
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 164 NNTEFKGKKI----------RCSTS-QAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
N K++ R ST+ + K+ +++ N+ + +DL+ E G +T
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITS 243
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPTVS 260
++KD + S +GF F+ + N A + + + F K +
Sbjct: 244 AVVMKDGEGKS--KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELR 301
Query: 261 WADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319
+N+ +++ Q +YVKNL +++ ++LK++F G +T V G K
Sbjct: 302 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS- 360
Query: 320 GFVHFAERSSAMKAL 334
GFV FA A +A+
Sbjct: 361 GFVAFATPEEATEAM 375
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 26/150 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ + ++ DL++ G++T +MK + ++KGF FV F N + A++A++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEG-KSKGFGFVNFENADDAARAVE 273
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
LN +F K+ +Q K L++ N+ + E
Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEK 333
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
L+++ S G VT ++++D +S GF
Sbjct: 334 LKEIFSPFGT-VTSSKVMRDPNGTSKGSGF 362
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 20/249 (8%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 165 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 219
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ ++VT+++ ++LFE G IT + + G+ + GFV+F+
Sbjct: 220 SKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG-FGFVNFS 278
Query: 326 ERSSAMKAL 334
SA A+
Sbjct: 279 THESAQAAV 287
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I D +E + R+ + GE+T + + ++ +
Sbjct: 213 ISKKDRQSKFEEMKA---NFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEG-K 268
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A+D++N E + +K+ +Q K+
Sbjct: 269 SRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKH 309
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 164 NNTE------FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI ++ E+ +++ + G +
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGE-I 256
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + +M + T V A ++
Sbjct: 257 TSATLSRDQEGKS--RGFGFVNFSTHESAQAAVDEMNEKEIR--TQKLYVGRAQKKHERE 312
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF +G IT V
Sbjct: 313 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 364
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
K ++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 427 KGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 119/259 (45%), Gaps = 20/259 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 222
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ + VT ++ +K+FE G IT + + G+ + GFV+F+
Sbjct: 223 SKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 281
Query: 326 ERSSAMKALKNTEKYELDG 344
SA A+ E+ G
Sbjct: 282 THDSAQAAVDEMNDKEIKG 300
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I + ++ + R + GE+T + + ++ +
Sbjct: 216 ISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEG-K 271
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + A A+D++N+ E KG+K+ +Q K+
Sbjct: 272 SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKH 312
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 164 NNTE------FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI + E+ +K+ + G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H A+ + +M + K V A ++
Sbjct: 260 TSATLSRDQEGKS--RGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF G IT V
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 140 SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 420 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 461
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 119/259 (45%), Gaps = 20/259 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 222
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ + VT ++ +K+FE G IT + + G+ + GFV+F+
Sbjct: 223 SKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 281
Query: 326 ERSSAMKALKNTEKYELDG 344
SA A+ E+ G
Sbjct: 282 THDSAQAAVDEMNDKEIKG 300
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I + ++ + R + GE+T + + ++ +
Sbjct: 216 ISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEG-K 271
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + A A+D++N+ E KG+K+ +Q K+
Sbjct: 272 SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKH 312
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 164 NNTE------FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI + E+ +K+ + G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H A+ + +M + K V A ++
Sbjct: 260 TSATLSRDQEGKS--RGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF G IT V
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 140 SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 418 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 459
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 20/256 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + SIG+V +R+ + + + G+A+V + + E KA++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KGK R SQ + +FI N+ ++ L + G + +
Sbjct: 108 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCK 166
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ +D N++G+ F+ Y + A + + + L V P+ S
Sbjct: 167 VAQD--ELGNSKGYGFVHYETAEAANNAIKHVN--GMLLNEKKVFVGHHIPKKERMSKFE 222
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERS 328
++KA +YVKN+ +VT + ++LFE HG IT + A+ Q K+R GFV++
Sbjct: 223 EMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASI--ARDDQGKSRGFGFVNYIRHE 280
Query: 329 SAMKALKNTEKYELDG 344
+A A+ + E G
Sbjct: 281 AAAVAVDHLNDIEFKG 296
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I D ++ D R+ + G++T I + D +++GF FV + E A+ A+D
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIAR-DDQGKSRGFGFVNYIRHEAAAVAVD 287
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
LN+ EFKG+K+ +Q K+
Sbjct: 288 HLNDIEFKGQKLYVGRAQKKH 308
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + H L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 164 NNTEFKGKKI----------RCST---SQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ R S +A + +++ NI + ED +++ + G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHG-DI 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + S RGF F+ Y H+ A + + + FK V A ++
Sbjct: 256 TSASIARDDQGKS--RGFGFVNYIRHEAAAVAVDHLNDIEFK--GQKLYVGRAQKKHERE 311
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ Q +Y+KNL +V ++L+ +F G IT V
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKV 363
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F N + A+KA+ ++N +GK + + +Q K
Sbjct: 423 KSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 116/249 (46%), Gaps = 20/249 (8%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 166
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 167 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 221
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ +VT+++ +K+FE G IT + G+ + GFV+++
Sbjct: 222 SKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRG-FGFVNYS 280
Query: 326 ERSSAMKAL 334
SA A+
Sbjct: 281 THESAQAAV 289
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 164 NNTE------FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI + E+ +K+ + G +
Sbjct: 200 NGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGE-I 258
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ Y H+ A+ + +M + K T V A ++
Sbjct: 259 TSATLSRDPEGKS--RGFGFVNYSTHESAQAAVDEMHDKEVK--TQKLYVGRAQKKHERE 314
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF +G IT V
Sbjct: 315 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 366
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +YI I D +E + R + GE+T + + + +
Sbjct: 215 ISKKDRQSKFDEMKA---NFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEG-K 270
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + E A A+D++++ E K +K+ +Q K+
Sbjct: 271 SRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKH 311
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 426 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 15/254 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + +E L D + V +R+ + + + G+A+V F N E AS+A++
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 162 KLNNTEFKGKKIRCSTS--------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + + IR S K +FI N+ + ++ L + S G + +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 176
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D+ S +G+ F+++ + A+ + K+ N K V D +S
Sbjct: 177 VAMDVVGRS--KGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGA 234
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VYVKNLP+ +T D+LKK F +G I+ VV + G ++ GFV+F +A
Sbjct: 235 VPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPEAAA 293
Query: 332 KALKNTEKYELDGD 345
A++ L D
Sbjct: 294 VAVEKMNGISLGED 307
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 30/172 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ +P + ++ +L+ G+++ +MK + S ++ F FV F + E A+
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAV 294
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKY------------------------RLFIGNIPRNWG 194
A++K+N + +Q K L++ N+ +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 354
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSN-NRGFAFIEYHNHKCAEYSRQKM 245
E L+++ SE G V K M NS +RGF F+ Y N + A + ++M
Sbjct: 355 DEKLKEMFSEYG----NVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 402
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 20/249 (8%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 169
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 224
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KNL + D+ +K+FE G IT + + G+ + GFV+F+
Sbjct: 225 SKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 283
Query: 326 ERSSAMKAL 334
SA A+
Sbjct: 284 THESAQAAV 292
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 164 NNTE------FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I N+ ++ +K+ + G +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 261
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 262 TSATLSRDQEGKS--RGFGFVNFSTHESAQAAVEEMNDKEIR--SQKLYVGRAQKKHERE 317
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL ++ ++L++LF +G IT V
Sbjct: 318 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 369
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI + + + + R + GE+T + + ++ +
Sbjct: 218 ISKKDRQSKFEEMKA---NFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GK 273
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 274 SRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKH 314
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
K ++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 429 KPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 473
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 120/259 (46%), Gaps = 20/259 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 163
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 164 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 218
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KNL + +++++ +++FE G IT + + G+ + GFV+++
Sbjct: 219 SKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRG-FGFVNYS 277
Query: 326 ERSSAMKALKNTEKYELDG 344
SA A+ E+ G
Sbjct: 278 THDSAQAAVDEMNDKEVKG 296
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI + + SE + R + GE+T + + ++ +
Sbjct: 212 ISKKDRQSKFEEMKA---NFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEG-K 267
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + + A A+D++N+ E KG+K+ +Q K+
Sbjct: 268 SRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKH 308
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 34/218 (15%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE------FKGK 171
L D + G + ++ + + +KG+ FV + E A+ AI +N F G
Sbjct: 152 LHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 210
Query: 172 KIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
I Q+K+ ++I N+ + E+ +++ + G +T L +D + S
Sbjct: 211 HISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGE-ITSATLSRDQEGKS- 268
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--------------VDS 269
RGF F+ Y H A+ + +M + K V A ++ ++
Sbjct: 269 -RGFGFVNYSTHDSAQAAVDEMNDKEVK--GQKLYVGRAQKKHEREEELRKQYEAARLEK 325
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ Q +YVKNL ++ ++L+++F +G IT V
Sbjct: 326 ASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKV 363
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 140 SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 420 GKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRK 461
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 20/249 (8%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + +Y+G + +E L + SIG V +R+ + + + G+A+V F N+E K
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KG+ R SQ L FI N+ ++ L S G ++
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 196
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
V ++ N+ +G+ F+ + + + A + + + L V R S
Sbjct: 197 CKVAVDELGNA---KGYGFVHFDSVESANAAIEHVN--GMLLNDKKVYVGHHVSRRERQS 251
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFA 325
+KA VY+KNL +T+ + LF G IT + + K +K R GFV++A
Sbjct: 252 KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VKDQNDKPRGFGFVNYA 309
Query: 326 ERSSAMKAL 334
A KA+
Sbjct: 310 NHECAQKAV 318
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 28/169 (16%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
+++ +++ AL + + VYI + + +E + D GE+T + ++K ++ + +GF F
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGF 305
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------------R 183
V + N E A KA+D+LN+ E+KGKK+ +Q K+
Sbjct: 306 VNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN 365
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
LFI N+ E L+ S G +T +++ D + S +GF F+ Y
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFG-TITSAKIMTDEQGKS--KGFGFVCY 411
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 83 EDEDEKKKHAELLALPP----HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
E E+E +K E + L G ++I + + + L+ + G +T +IM +
Sbjct: 341 EREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT-DE 399
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV + E A+KA+ ++N GK + + +Q K
Sbjct: 400 QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 17/248 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A+ + + + L V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVN--GMLLNDKKVFVGHHIAKKDRQS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKN+ ++ T+++ + LFE G IT + + GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTS 286
Query: 327 RSSAMKAL 334
+A A+
Sbjct: 287 HDNAAAAV 294
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 28/161 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D +E + RD + GE+T + + +S +
Sbjct: 219 IAKKDRQSKFEEMKA---NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGK 275
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F + + A+ A++ LN+ +FKG+K+ +Q K+
Sbjct: 276 SRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 335
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
L+I N+ + E L+++ S G +T ++++D
Sbjct: 336 KYQGVNLYIKNLSDDIDDEKLRELFSSYGT-ITSAKVMRDF 375
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A AI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 164 NNTE------FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ NI ++ E+ + + + G +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGE-I 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S +RGF F+ + +H A + + + + +FK V A ++
Sbjct: 263 TSATLARDAE-SGKSRGFGFVNFTSHDNAAAAVEALNDKDFK--GQKLYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ ++L++LF +G IT V
Sbjct: 320 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 52/134 (38%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK------------------------ 135
G +YI + D + LR+ S G +T ++M+
Sbjct: 338 QGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETK 397
Query: 136 -------------GKDSSEN---------------KGFAFVTFRNVELASKAIDKLNNTE 167
KD+ EN KGF FV F + + ASKA+ ++N
Sbjct: 398 EEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRM 457
Query: 168 FKGKKIRCSTSQAK 181
GK + + +Q K
Sbjct: 458 VHGKPLYVALAQRK 471
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 20/249 (8%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + + +
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D S +G+ F+ Y + AE + + + N L + +S D +
Sbjct: 158 SCKVAQDEFGVS--KGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 212
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ V ++ +KLFE G IT + G+ + GFV+F+
Sbjct: 213 SKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG-FGFVNFS 271
Query: 326 ERSSAMKAL 334
SA A+
Sbjct: 272 THESAQAAV 280
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 164 NNTE------FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI E+ +K+ + G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 250 TSATLSRDSEGKS--RGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V D+L++LF +G IT V
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-S 140
I +D + K E+ A + + +YI I + + + R + GE+T + +DS
Sbjct: 206 ISKKDRQSKFEEMKA---NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATL--SRDSEG 260
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
+++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 261 KSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKH 302
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 114/261 (43%), Gaps = 17/261 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V P+
Sbjct: 176 LSCKVAQD--ENGNSKGYGFVHYETDEAASQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 231
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKN+ VT D+ + LFE +G +T + + + GFV+F
Sbjct: 232 SKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFT 291
Query: 326 ERSSAMKALKNTEKYELDGDH 346
A KA++ + E G +
Sbjct: 292 SHEDASKAVQELNEKEFHGQN 312
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 28/160 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ I + ++ + R + G+VT + + +++ +
Sbjct: 225 IPKKDRQSKFDEMKA---NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGK 281
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F + E ASKA+ +LN EF G+ + +Q K+
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKAS 341
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ E L+++ SE GP +T ++++D
Sbjct: 342 KYQGVNLYIKNLDDEVDDEKLRQLFSEFGP-ITSAKVMRD 380
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 33/218 (15%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS- 176
L D + G + ++ + ++ +KG+ FV + E AS+AI +N KK+
Sbjct: 165 LHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 223
Query: 177 -----TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ +++ NI ++ + + + G VT L +D + +
Sbjct: 224 HIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYG-DVTSSSLARD-QETGK 281
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-------VDSSGASQVK 276
+RGF F+ + +H+ A + Q++ F G N V A ++ A Q K
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFH-GQNL-YVGRAQKKHEREEELRKSYEAARQEK 339
Query: 277 A-------VYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
A +Y+KNL V ++L++LF G IT V
Sbjct: 340 ASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 123/281 (43%), Gaps = 21/281 (7%)
Query: 78 GDMQIEDEDEKKKHAELLALPPHGS-EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG 136
G+ Q D D A P S +Y+G + +E L + IG V +R+ +
Sbjct: 40 GEYQTADPDTAGPTPSSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRD 99
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGN 188
+ + G+A+V + + KA+++LN T KG+ R SQ + +FI N
Sbjct: 100 TITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKN 159
Query: 189 IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248
+ ++ L + G + ++ +D + N++G+ F+ Y + A + + +
Sbjct: 160 LDVAIDNKALHDTFAAFG-NILSCKVAQD--ENGNSKGYGFVHYETDEAAAQAIKHVN-- 214
Query: 249 NFKLGTNAPTVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITK 304
N L V + P+ S ++KA +YVKN+ T ++ + LF +G +T
Sbjct: 215 NMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTS 274
Query: 305 VVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNTEKYELDG 344
+ A+ + K+R GFV+F A KA++ E G
Sbjct: 275 SSL--ARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRG 313
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 31/161 (19%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-S 140
I +D + K E+ A + + +Y+ I +A++ + RD G+VT + +DS
Sbjct: 229 IPKKDRQSKFEEMKA---NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSL--ARDSEG 283
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------ 182
+++GF FV F E A+KA+++LN EF+G+ + +Q K+
Sbjct: 284 KSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 343
Query: 183 ------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + + L+++ SE GP +T ++++D
Sbjct: 344 NKYQGVNLYIKNLADDIDDDKLRQMFSEYGP-ITSAKVMRD 383
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 34/218 (15%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177
L D + G + ++ + ++ +KG+ FV + E A++AI +NN KK+
Sbjct: 169 LHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGY 227
Query: 178 ------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ +++ NI E+ + + ++ G VT L +D + S
Sbjct: 228 HIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DVTSSSLARDSEGKS- 285
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--------------VDS 269
RGF F+ + H+CA + +++ F+ G + V A ++ ++
Sbjct: 286 -RGFGFVNFTTHECAAKAVEELNGKEFR-GQDL-YVGRAQKKHEREEELRKSYEAARLEK 342
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ Q +Y+KNL ++ D+L+++F +G IT V
Sbjct: 343 ANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKV 380
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 140 SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F N + A+KA+ ++N +GK + + +Q K
Sbjct: 431 GKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 123/271 (45%), Gaps = 18/271 (6%)
Query: 86 DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
D ++ E + + + +Y+G + +E L + IG+V +R+ + S ++ G+
Sbjct: 51 DSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGY 110
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSED 197
A+V + +E KAI++LN T +G+ R SQ +FI N+ ++
Sbjct: 111 AYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKA 170
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L S G + V++ D + ++ F F+ Y + A+ + + + L
Sbjct: 171 LHDTFSAFGK-ILSVKVATD--DLGQSKCFGFVHYETEEAAQAAIESVN--GMLLNDREV 225
Query: 258 TVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
V + S ++KA +YVKN+ T+ + ++LF G+IT + + G
Sbjct: 226 YVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEG 285
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+ K GFV+F E +A KA++ E++G
Sbjct: 286 KSKG-FGFVNFEEHEAAAKAVEELNDKEING 315
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 32/189 (16%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
+K + ++L + + + +Y+ I +E + + G++T + + K + ++KGF
Sbjct: 233 KKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEG-KSKGFG 291
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR-- 183
FV F E A+KA+++LN+ E G+KI +Q +KY+
Sbjct: 292 FVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGV 351
Query: 184 -LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN----HKCA 238
LF+ N+ SE L++ G + +V D S +GF F+ + K
Sbjct: 352 NLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKS---KGFGFVCFSTPEEATKAI 408
Query: 239 EYSRQKMTN 247
Q+M N
Sbjct: 409 TEMNQRMVN 417
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 18/246 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G +P D +E L D S G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N + K IR SQ L FI N+ R ++ + S G + +
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFG-NILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ D K N++G+ F+ + + A S K+ L V PR
Sbjct: 121 VATDEK--GNSKGYGFVHFETEEAANTSIDKVN--GMLLNGKKVYVGKFIPRKEREKELG 176
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A VYVKN + ++LK+ FE +G+IT V + G+ K GFV F +
Sbjct: 177 EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG-FGFVAFETTEA 235
Query: 330 AMKALK 335
A A++
Sbjct: 236 AEAAVQ 241
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ D + L++F + G++T ++M K+ ++KGF FV F E A A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 162 KLNNTEF-KGKKIRCSTSQAK 181
LN + +GK + + +Q K
Sbjct: 242 ALNGKDMGEGKSLYVARAQKK 262
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + D + G + ++ + +KG+ FV F E A+ +IDK+
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT-DEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 164 NNTEFKGKKIRCST--------------SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N GKK+ ++ +++ N ++ E L++ G +
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGK-I 209
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS--------- 260
T +++ K ++GF F+ + + AE + Q + + G +
Sbjct: 210 TSYKVMS--KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQ 267
Query: 261 --------WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
R+ G + +YVKNL + D+L+ F +G IT V +
Sbjct: 268 ELKRKFEELKQKRHESVFGVN----LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE 323
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
G+ K GFV F S A A+ EL+G
Sbjct: 324 GRSKG-FGFVCFNAASEATCAVT-----ELNG 349
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 84 DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENK 143
+E ++K+H + G +Y+ + + LR G +T ++M ++ +K
Sbjct: 274 EELKQKRHESVF-----GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEG-RSK 327
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
GF FV F A+ A+ +LN K + + +Q K
Sbjct: 328 GFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRK 365
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 14/254 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + SE L D IG V+ +R+ + + + G+A+V F + E KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KG+ R SQ +FI N+ + ++ L S G + +
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG-DILSSK 156
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S +GF F+ + A+ + + N + AP +S + +
Sbjct: 157 IATDENGKS--KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEET 214
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ +YVKN+ T +Q ++LF G I + G+ K GFV++ + A+
Sbjct: 215 KAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG-FGFVNYEKHEDAV 273
Query: 332 KALKNTEKYELDGD 345
KA++ EL+G+
Sbjct: 274 KAVEALNDSELNGE 287
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 33/216 (15%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
K++ ++L H + +Y+ I + ++ ++ G + + K D + KGF F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADG-KLKGFGF 263
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR--- 183
V + E A KA++ LN++E G+K+ +Q AKY+
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN 323
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
LF+ N+ + E L++ + G +T ++++ S +GF F+ + E + +
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGT-ITSAKVMRTENGKS--KGFGFVCF---STPEEATK 377
Query: 244 KMTNPNFKLGTNAPT-VSWADPRNVDSSG-ASQVKA 277
+T N ++ P V+ A ++V S A Q++A
Sbjct: 378 AITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQA 413
>sp|Q6DCB7|DND1_XENLA Dead end protein homolog 1 OS=Xenopus laevis GN=dnd1 PE=2 SV=2
Length = 371
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P GSEV+IG IP D E L QS+G++ E R+M S N+GFA+ + + A
Sbjct: 73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMM-TFSGLNRGFAYARYISRRQAI 131
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LN E KG I S K L + +P N+ L+ V+ EV GV+ + L
Sbjct: 132 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISL-- 189
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
+ ++ A ++Y +H+ A +++ + + L TV+W
Sbjct: 190 HPSPTKESQVLAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 22/164 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G IP + + +LR + G + +M K S ++ F FVT + VE A+ I+KL
Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145
Query: 164 NNTEFKGKKIRC------------STSQAK--------YRLFIGNIPRNWGSEDLQKVVS 203
N+TE G+KI+ +T+QA+ Y+++IGN+ + +E L+ S
Sbjct: 146 NDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFS 205
Query: 204 EVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247
E G V G + V+ +S + GF F+ + + + E + Q + N
Sbjct: 206 EKGK-VLGAK-VQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNN 247
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM--KNSSNNRGFAFIEYHNHKCAEY 240
RL++GNIPRN +++L+ +V E G +E+ + M K S +R F F+ + A
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHG----AIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140
Query: 241 SRQKMTNPNF---KLGTNAP-----TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQL 292
+K+ + K+ N + A + DS VY+ NL + VT + L
Sbjct: 141 VIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELL 200
Query: 293 KKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA---ERSSAMKALKNT 337
K F G++ V + N GFV F+ E +A++AL N+
Sbjct: 201 KDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNS 248
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+VYIG + + L+DF G+V ++ + +S++ GF FV+F + E AI
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244
Query: 163 LNNTEFKGKKIRCS 176
LNN+ +G+KIR +
Sbjct: 245 LNNSVLEGQKIRVN 258
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 268 DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
D GA + +YV N+PRN+ D+L+ + E HG I V K R GFV
Sbjct: 79 DGEGA---RRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTV 135
Query: 328 SSAMKALKNTEKYELDG 344
A ++ E+ G
Sbjct: 136 EDANAVIEKLNDTEIGG 152
>sp|Q8IYX4|DND1_HUMAN Dead end protein homolog 1 OS=Homo sapiens GN=DND1 PE=1 SV=1
Length = 353
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 4/168 (2%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEV+IG +P D EH L Q +G + E R+M S N+GFA+ + + A
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI L+N + + S K L + +P N L + +GPG+ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLP 172
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
+ A +++ +H+ A +++ + L V W P
Sbjct: 173 SPGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 17/254 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +RI + +S + +A+V F++ + A A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L F+ N+ ++ ++ L VS G +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D S +G+ F+ + H+ AE + +KM N G + + ++ +
Sbjct: 130 VVCDENGS---KGYGFVHFETHEAAERAIKKM-NGMLLNGRKVFVGQFKSRKEREAELGA 185
Query: 274 QVK---AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+ K VY+KN ++ ++LK LF G V V + G+ K GFV F A
Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 331 MKALKNTEKYELDG 344
KA+ EL+G
Sbjct: 245 QKAVDEMNGKELNG 258
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ E L+K S G + K M ++GF F+ +
Sbjct: 293 VVNLYVKNLDDGIDDERLRKAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 105/261 (40%), Gaps = 41/261 (15%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++ + + L D + G + ++ D + +KG+ FV F E A +AI K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVC--DENGSKGYGFVHFETHEAAERAIKKM 158
Query: 164 NNTEFKGKKIRCSTSQAKYR----------------LFIGNIPRNWGSEDLQKVVSEVGP 207
N G+K+ Q K R ++I N + E L+ + + GP
Sbjct: 159 NGMLLNGRKV--FVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGP 216
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-- 265
++ V+++ D S ++GF F+ + H+ A+ + +M +L V A +
Sbjct: 217 ALS-VKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVE 271
Query: 266 ------------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
D QV +YVKNL + ++L+K F G IT V G
Sbjct: 272 RQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKV--MMEG 329
Query: 314 QEKNRIGFVHFAERSSAMKAL 334
GFV F+ A KA+
Sbjct: 330 GRSKGFGFVCFSSPEEATKAV 350
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+ + + LR G +T ++M + +KGF FV F + E A+KA+ ++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 164 NNTEFKGKKIRCSTSQAK 181
N K + + +Q K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 33/267 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + E+ L GE+ ++++ K + + +G+ F+ F + A + +
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 164 NNT---EFKGKKIRCSTSQAK----------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
NN F + R + + Y +F+G++ + L + P V
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 211 GVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G ++V D + + +G+ F+ + + E + + ++G A R
Sbjct: 184 GAKVVID-RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 266 NVDSSGASQV--------KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ S A+ V V+V L +VT D LK +F +G I V +P K
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK------ 296
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDG 344
R GFV F+E+S A +AL+ +L G
Sbjct: 297 RCGFVQFSEKSCAEEALRMLNGVQLGG 323
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + V++GG+ ++ L++ GE+ V+I GK FV F A +
Sbjct: 258 PNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCAEE 311
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN + G +R S
Sbjct: 312 ALRMLNGVQLGGTTVRLS 329
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 18/245 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + +E L D +G ++ +R+ + + + G+A+V + + E KAI
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 162 KLNNTEFKGKKIRCSTS--------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN E G+ R S + +FI N+ ++ L + S G V +
Sbjct: 110 ELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGE-VLSCK 168
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D + N+RGF F+ + A+ + + + + V+ P+ S
Sbjct: 169 VALD--ENGNSRGFGFVHFKEESDAKDAIEAVN--GMLMNGLEVYVAMHVPKKDRISKLE 224
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ KA +YVKN+ T ++ ++LF +G I + G+ K GFV+F + ++
Sbjct: 225 EAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKG-FGFVNFVDHNA 283
Query: 330 AMKAL 334
A KA+
Sbjct: 284 AAKAV 288
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 33/202 (16%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I + ++ + GE+ + K + KGF FV F + A+KA++
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKP-KGFGFVNFVDHNAAAKAVE 289
Query: 162 KLNNTEFKGKKIRCSTSQAKY------------------------RLFIGNIPRNWGSED 197
+LN EFK + + +Q KY LFI N+ + E
Sbjct: 290 ELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEK 349
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L++ + G +T +++D + N++GF F+ + + E + + MT N ++ P
Sbjct: 350 LKEEFAPYGT-ITSARVMRDQE--GNSKGFGFVCFSS---PEEATKAMTEKNQQIVAGKP 403
Query: 258 T-VSWADPRNVDSSG-ASQVKA 277
V+ A ++V S A Q++A
Sbjct: 404 LYVAIAQRKDVRRSQLAQQIQA 425
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G + N L V S +GP ++ + + +D ++ G+A++ Y +++ + + Q
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGP-ISSIRVCRDAVTKAS-LGYAYVNYTDYEAGKKAIQ 109
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
++ N+ P + W+ DP + G+ + ++KNL + L + F G
Sbjct: 110 EL---NYAEINGRPCRIMWSERDPA-IRKKGSGNI---FIKNLHPAIDNKALHETFSTFG 162
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
+ V + G + GFVHF E S A A++ ++G
Sbjct: 163 EVLSCKVALDENGNSRG-FGFVHFKEESDAKDAIEAVNGMLMNG 205
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 19/255 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ +FI N+ + ++ L S G + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ D S RGF F+ + H+ A+ + M L V R
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMN--GMLLNDRKVFVGHFKSRREREAELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKNLP +V + L+ LF G++ V V G + GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDG 344
A KA+ + E+ G
Sbjct: 244 AQKAVVHMNGKEVSG 258
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 33/243 (13%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177
L D + G + ++ D ++GF FV F E A +AI+ +N +K+
Sbjct: 115 LYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 178 SQAK--------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
+++ +++ N+P + + LQ + S+ G ++ V++++D NS +
Sbjct: 173 FKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLS-VKVMRD--NSGH 229
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNVDSSGASQVKA---- 277
+R F F+ + H+ A+ + M +L + +N Q+K
Sbjct: 230 SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLR 289
Query: 278 ------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+YVKNL ++ D+L+K F +G IT V G GFV F+ A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEAT 347
Query: 332 KAL 334
KA+
Sbjct: 348 KAV 350
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P D E L+D G++ V++M+ +S ++
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-DNSGHSRC 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + + LR G +T ++M + +KGF FV F + E A+KA+
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 161 DKLNNTEFKGKKIRCSTSQAK 181
++N K + + +Q K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 117/255 (45%), Gaps = 18/255 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG+V+ +R+ + S ++ G+A+V + +E KAI+
Sbjct: 52 ASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIE 111
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + +G+ R SQ +FI N+ ++ L S G ++
Sbjct: 112 ELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKV 171
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
DM S + F F+ Y + AE + + + L V + S
Sbjct: 172 ATDDMGQS---KCFGFVHYETAEAAEAAIENVN--GMLLNDREVFVGKHISKKDRESKFE 226
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++KA +YVKN+ +++ LKKLF +G IT + + G+ K GFV++ +
Sbjct: 227 EIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKG-FGFVNYEGHEA 285
Query: 330 AMKALKNTEKYELDG 344
A+KA++ E++G
Sbjct: 286 AVKAVEELNDKEING 300
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 31/175 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ I + SE DL+ G +T + + K + +
Sbjct: 216 ISKKDRESKFEEIKA---NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEG-K 271
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------A 180
+KGF FV + E A KA+++LN+ E G+KI +Q +
Sbjct: 272 SKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLS 331
Query: 181 KYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
KY+ LFI N+ SE L++ G +T ++ D + ++GF F+ +
Sbjct: 332 KYQGVNLFIKNLDDTIDSEKLEEEFKPFGT-ITSARVMVD--ETGKSKGFGFVCF 383
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 18/255 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG+V +R+ + + ++ G+A+V F E KAI+
Sbjct: 51 ASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIE 110
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + +G+ R SQ L FI N+ ++ L + G ++
Sbjct: 111 DLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKV 170
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
DM S + F F+ Y + AE + + + L V + S
Sbjct: 171 ATDDMGIS---KCFGFVHYETAEAAEAAIENVN--GMLLNDREVYVGKHISKKDRESKFE 225
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++KA VY KN+ + ++++ KKLFE +G+IT + + G+ K GFV+F S
Sbjct: 226 EMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKG-FGFVNFENHES 284
Query: 330 AMKALKNTEKYELDG 344
A+KA+ E++G
Sbjct: 285 AVKAVDELNDKEING 299
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 31/175 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY I D SE + + ++ G++T + + K + +
Sbjct: 215 ISKKDRESKFEEMKA---NFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEG-K 270
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------A 180
+KGF FV F N E A KA+D+LN+ E G+KI +Q +
Sbjct: 271 SKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLS 330
Query: 181 KYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
KY+ LFI N+ SE L++ G +T ++ D + ++GF F+ +
Sbjct: 331 KYQGVNLFIKNLDDTIDSEKLEEEFKPFG-SITSARVMVD--ETGKSKGFGFVCF 382
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G ++I + L + + G +T R+M ++ ++KGF FV F + E A+KA
Sbjct: 333 QGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMV-DETGKSKGFGFVCFSSPEEATKA 391
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N GK + + +Q K
Sbjct: 392 ITEMNQRMIYGKPLYVALAQRK 413
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P +++++G +P+D L Q G V ++ +++ ++GF FVT VE A
Sbjct: 93 PSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAD 152
Query: 158 KAIDKLNNTEFKGKKIRCS--------------TSQAKYRLFIGNIPRNWGSEDLQKVVS 203
KA++ + + G+ + + T Q YR+++GNIP + L++V S
Sbjct: 153 KAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFS 212
Query: 204 EVGPGVTGVELVKDMKNSSNNRGFAFI 230
E G V +V D + S +RGF F+
Sbjct: 213 EHGK-VVSARVVFD-RESGRSRGFGFV 237
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+LF+GN+P + SE L ++ + G V + V + + +RGF F+ + A+ +
Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAG--VVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQV----KAVYVKNLPRNVTQDQLKKLFEH 298
+ + + L TV+ A PR A + +YV N+P ++ +L+++F
Sbjct: 156 ELYSQ--YDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSE 213
Query: 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
HG++ V + GFV + + +A+ N + LDG
Sbjct: 214 HGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDG 259
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G IP D + L G+V R++ ++S ++GF FVT + S+AI L
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252
Query: 164 NNTEFKGKKIRCSTSQAKYR 183
+ G+ IR + ++ + R
Sbjct: 253 DGQTLDGRTIRVNAAEERPR 272
>sp|Q8SR30|PABP_ENCCU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Encephalitozoon cuniculi (strain GB-M1) GN=PAB1 PE=1
SV=1
Length = 502
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + + DL ++G+V V+++K + + FAFVTF N E A +AI +
Sbjct: 16 IYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAIREY 73
Query: 164 NNTEFKGKKIRCSTSQAK----YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+ E ++IR + +F+ N+P ++ +DL S G V+ K
Sbjct: 74 KHYELHNRQIRVMKKDERPPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVS----CKVAT 129
Query: 220 NS-SNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADP---RNVDSSGASQ 274
S ++G+ F+++ K A+ + ++ + LG N V +P + ++
Sbjct: 130 TSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSAT 189
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
++KN P + ++ +L +L E +G++T + P G+ K F +F SA+ A+
Sbjct: 190 FTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKG-FAFANFENHESALNAI 248
Query: 335 KN 336
KN
Sbjct: 249 KN 250
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 113/283 (39%), Gaps = 40/283 (14%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP +++ +P D + DL D GE+ ++ ++KG+ FV F+ + A
Sbjct: 92 PPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVAT-TSHGKSKGYGFVQFKEKKAAK 150
Query: 158 KAI---DKLNNTEFKGKKIRC-------------STSQAKYRLFIGNIPRNWGSEDLQKV 201
K I L+ G +I TS FI N P + +L ++
Sbjct: 151 KVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFDASEAELLEL 210
Query: 202 VSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM--TNPNFKLGTNAPTV 259
+ G VT L +K++ +GFAF + NH+ A + + + T P F G +
Sbjct: 211 LERYGK-VT--SLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFP-FGAGRDGTGE 266
Query: 260 SWADPRN----------------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
++ + + G S K +Y+ N+P ++L +F+ G IT
Sbjct: 267 AFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNIT 326
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346
+ V +K + ++ ++ A A++ + LDG+
Sbjct: 327 SISVGVDGANSQK-QYAYICYSTPEEASIAVERGNEIYLDGNR 368
>sp|Q6VY05|DND1_MOUSE Dead end protein homolog 1 OS=Mus musculus GN=Dnd1 PE=1 SV=1
Length = 352
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 4/168 (2%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEVYIG +P D EH L Q +G + E R+M S N+GFA+ + + A
Sbjct: 54 PPSGSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI L+N + + ++ S K L + +P + L + GP + L+
Sbjct: 113 AAIATLHNHQLRPSCQLLVCRSTEKCELTVDGLPLSLNRRALLLALQPFGPCLQETLLLP 172
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
++ + A +++ H+ A +++ + +L V W P
Sbjct: 173 SPGSAPSQ--IALLKFSTHRAAAMAKKALVEGQSRLCGEQVAVEWLKP 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,075,017
Number of Sequences: 539616
Number of extensions: 6592073
Number of successful extensions: 155644
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2570
Number of HSP's successfully gapped in prelim test: 1714
Number of HSP's that attempted gapping in prelim test: 69149
Number of HSP's gapped (non-prelim): 38855
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)