Query 019068
Match_columns 346
No_of_seqs 230 out of 2220
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.4E-47 1.4E-51 346.5 30.1 245 100-346 2-340 (352)
2 KOG0117 Heterogeneous nuclear 100.0 1.6E-45 3.4E-50 320.2 25.5 243 95-345 77-321 (506)
3 KOG0145 RNA-binding protein EL 100.0 2.5E-42 5.4E-47 280.5 22.4 244 100-345 40-348 (360)
4 TIGR01648 hnRNP-R-Q heterogene 100.0 7.3E-42 1.6E-46 320.4 26.9 240 98-346 55-298 (578)
5 TIGR01628 PABP-1234 polyadenyl 100.0 2.1E-40 4.5E-45 320.5 28.2 235 103-343 2-245 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-38 2.3E-43 308.6 28.0 242 100-346 87-355 (562)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1E-37 2.2E-42 294.6 29.1 229 101-346 2-342 (481)
8 TIGR01622 SF-CC1 splicing fact 100.0 2.6E-37 5.7E-42 292.3 28.9 239 99-346 87-439 (457)
9 KOG0127 Nucleolar protein fibr 100.0 1.1E-37 2.4E-42 277.2 22.2 240 101-345 5-368 (678)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.6E-36 3.5E-41 290.9 27.7 236 100-346 174-493 (509)
11 TIGR01645 half-pint poly-U bin 100.0 4.6E-36 1E-40 281.7 28.4 161 99-263 105-282 (612)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.4E-35 2E-39 274.5 28.7 230 101-345 96-464 (481)
13 KOG0148 Apoptosis-promoting RN 100.0 6.5E-35 1.4E-39 238.8 16.9 212 99-345 4-228 (321)
14 KOG0144 RNA-binding protein CU 100.0 1.3E-34 2.9E-39 251.1 17.9 243 101-346 34-495 (510)
15 KOG0123 Polyadenylate-binding 100.0 1.4E-30 3.1E-35 234.3 22.3 230 102-345 2-236 (369)
16 KOG0124 Polypyrimidine tract-b 100.0 1.6E-30 3.5E-35 221.3 18.6 242 101-346 113-526 (544)
17 TIGR01659 sex-lethal sex-letha 100.0 3.5E-30 7.7E-35 230.6 21.4 168 98-267 104-277 (346)
18 KOG0123 Polyadenylate-binding 100.0 1.6E-29 3.5E-34 227.5 22.1 235 103-346 78-340 (369)
19 KOG0127 Nucleolar protein fibr 100.0 2.5E-30 5.4E-35 230.5 16.5 234 101-337 117-516 (678)
20 TIGR01659 sex-lethal sex-letha 100.0 5.3E-29 1.2E-33 223.1 18.6 158 180-345 106-263 (346)
21 KOG0147 Transcriptional coacti 100.0 6.1E-29 1.3E-33 222.7 12.3 236 100-345 178-518 (549)
22 TIGR01645 half-pint poly-U bin 100.0 5.7E-28 1.2E-32 227.3 17.8 162 181-346 107-275 (612)
23 KOG0110 RNA-binding protein (R 100.0 9.4E-28 2E-32 220.8 18.7 238 100-346 384-684 (725)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.2E-27 1.1E-31 214.9 18.5 158 180-345 2-159 (352)
25 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-25 3.6E-30 211.9 18.1 162 180-346 88-257 (457)
26 KOG0148 Apoptosis-promoting RN 99.9 1.2E-25 2.6E-30 184.5 14.2 157 101-267 62-240 (321)
27 KOG0145 RNA-binding protein EL 99.9 2.5E-25 5.5E-30 181.5 12.0 159 179-345 39-197 (360)
28 KOG0131 Splicing factor 3b, su 99.9 7.4E-25 1.6E-29 169.9 12.8 167 99-268 7-180 (203)
29 KOG4212 RNA-binding protein hn 99.9 1.5E-23 3.4E-28 182.6 22.5 143 101-247 44-278 (608)
30 TIGR01648 hnRNP-R-Q heterogene 99.9 6.3E-24 1.4E-28 199.9 18.2 193 100-304 137-370 (578)
31 KOG0144 RNA-binding protein CU 99.9 1.3E-24 2.8E-29 189.2 12.0 157 182-344 35-193 (510)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.6E-23 3.5E-28 201.1 16.6 157 180-346 174-366 (509)
33 KOG0131 Splicing factor 3b, su 99.9 6.3E-24 1.4E-28 164.7 10.6 160 180-346 8-168 (203)
34 KOG0117 Heterogeneous nuclear 99.9 5.4E-22 1.2E-26 173.8 18.2 172 150-339 41-230 (506)
35 KOG0110 RNA-binding protein (R 99.9 1.7E-22 3.7E-27 186.3 13.1 214 100-346 226-589 (725)
36 KOG0146 RNA-binding protein ET 99.9 3.9E-22 8.5E-27 163.6 13.0 249 96-345 14-355 (371)
37 KOG0109 RNA-binding protein LA 99.9 3.9E-22 8.5E-27 165.5 9.6 138 103-346 4-141 (346)
38 KOG4206 Spliceosomal protein s 99.9 3E-20 6.6E-25 150.2 17.7 196 101-343 9-209 (221)
39 KOG0120 Splicing factor U2AF, 99.8 2.7E-19 5.9E-24 163.2 15.1 236 100-346 174-483 (500)
40 KOG0124 Polypyrimidine tract-b 99.8 1E-19 2.2E-24 155.6 10.5 160 182-345 114-280 (544)
41 KOG4211 Splicing factor hnRNP- 99.8 2.2E-18 4.9E-23 153.3 17.7 232 98-342 7-345 (510)
42 KOG1190 Polypyrimidine tract-b 99.8 9.9E-19 2.1E-23 151.7 14.1 230 99-346 26-364 (492)
43 KOG4205 RNA-binding protein mu 99.8 2.1E-19 4.5E-24 156.5 9.9 232 100-338 5-255 (311)
44 KOG0105 Alternative splicing f 99.8 6.2E-18 1.3E-22 131.7 14.0 145 99-255 4-180 (241)
45 KOG1548 Transcription elongati 99.8 2.1E-17 4.5E-22 140.9 18.4 194 98-346 131-343 (382)
46 KOG0147 Transcriptional coacti 99.8 5.7E-19 1.2E-23 159.1 7.2 160 182-346 180-349 (549)
47 KOG4205 RNA-binding protein mu 99.8 2.4E-18 5.3E-23 149.8 9.3 159 180-344 5-165 (311)
48 PLN03134 glycine-rich RNA-bind 99.7 3.1E-17 6.7E-22 129.1 11.2 82 100-181 33-114 (144)
49 KOG1457 RNA binding protein (c 99.7 2.3E-16 4.9E-21 126.7 14.7 228 99-344 32-275 (284)
50 KOG1190 Polypyrimidine tract-b 99.7 1.5E-15 3.2E-20 132.2 19.3 225 103-345 152-480 (492)
51 KOG1456 Heterogeneous nuclear 99.7 3E-15 6.4E-20 128.8 18.7 231 97-345 27-353 (494)
52 PLN03134 glycine-rich RNA-bind 99.7 3.7E-16 8E-21 123.0 10.0 72 275-346 34-105 (144)
53 PF00076 RRM_1: RNA recognitio 99.7 6.8E-16 1.5E-20 106.7 8.8 70 104-174 1-70 (70)
54 PF00076 RRM_1: RNA recognitio 99.6 5.4E-16 1.2E-20 107.2 6.2 68 278-346 1-68 (70)
55 KOG1365 RNA-binding protein Fu 99.6 3E-14 6.5E-19 123.1 16.0 242 96-345 55-352 (508)
56 KOG0105 Alternative splicing f 99.6 2.6E-14 5.5E-19 111.6 13.8 150 180-343 5-176 (241)
57 PF14259 RRM_6: RNA recognitio 99.6 8.8E-15 1.9E-19 101.1 8.6 70 104-174 1-70 (70)
58 PF14259 RRM_6: RNA recognitio 99.6 3.7E-15 7.9E-20 103.1 6.5 68 278-346 1-68 (70)
59 KOG0122 Translation initiation 99.6 8.6E-15 1.9E-19 119.4 9.4 82 100-181 188-269 (270)
60 KOG0114 Predicted RNA-binding 99.6 1.5E-14 3.3E-19 102.0 8.9 71 272-345 15-85 (124)
61 COG0724 RNA-binding proteins ( 99.6 6.2E-14 1.3E-18 124.0 14.5 176 101-342 115-292 (306)
62 KOG0126 Predicted RNA-binding 99.6 4.9E-16 1.1E-20 120.9 -0.2 80 100-179 34-113 (219)
63 PLN03120 nucleic acid binding 99.5 3.4E-14 7.3E-19 119.6 10.7 77 100-180 3-79 (260)
64 KOG0149 Predicted RNA-binding 99.5 1.3E-14 2.8E-19 117.9 7.6 78 101-179 12-89 (247)
65 KOG0106 Alternative splicing f 99.5 1.6E-14 3.5E-19 118.4 7.9 161 102-346 2-162 (216)
66 KOG1456 Heterogeneous nuclear 99.5 4E-12 8.8E-17 109.8 22.2 228 102-345 121-475 (494)
67 KOG0121 Nuclear cap-binding pr 99.5 2.5E-14 5.4E-19 105.0 6.9 81 99-179 34-114 (153)
68 KOG4211 Splicing factor hnRNP- 99.5 2E-13 4.3E-18 122.0 13.8 150 183-343 12-170 (510)
69 KOG0107 Alternative splicing f 99.5 5E-14 1.1E-18 109.2 8.0 76 100-180 9-84 (195)
70 KOG0113 U1 small nuclear ribon 99.5 6.9E-14 1.5E-18 117.3 9.2 80 100-179 100-179 (335)
71 KOG0122 Translation initiation 99.5 3.5E-14 7.5E-19 115.9 6.8 70 274-343 188-257 (270)
72 KOG0121 Nuclear cap-binding pr 99.5 4.7E-14 1E-18 103.5 6.7 71 276-346 37-107 (153)
73 PLN03120 nucleic acid binding 99.5 6.5E-14 1.4E-18 117.9 8.5 67 276-346 5-71 (260)
74 PLN03121 nucleic acid binding 99.5 1.7E-13 3.6E-18 113.5 10.5 77 99-179 3-79 (243)
75 PLN03213 repressor of silencin 99.5 1.3E-13 2.8E-18 123.0 9.8 78 100-181 9-88 (759)
76 KOG0114 Predicted RNA-binding 99.5 2.6E-13 5.6E-18 95.9 8.8 81 98-181 15-95 (124)
77 smart00362 RRM_2 RNA recogniti 99.5 3.8E-13 8.3E-18 92.9 9.5 72 103-176 1-72 (72)
78 KOG0125 Ataxin 2-binding prote 99.5 1.2E-13 2.7E-18 117.2 8.0 81 99-181 94-174 (376)
79 KOG4212 RNA-binding protein hn 99.5 1.9E-12 4.1E-17 113.9 14.8 160 181-345 44-284 (608)
80 KOG4207 Predicted splicing fac 99.5 1.5E-13 3.2E-18 109.3 6.8 81 99-179 11-91 (256)
81 KOG0125 Ataxin 2-binding prote 99.5 1.3E-13 2.9E-18 117.0 6.8 78 267-346 88-165 (376)
82 KOG0126 Predicted RNA-binding 99.5 9.8E-15 2.1E-19 113.7 0.0 99 240-346 8-106 (219)
83 KOG0113 U1 small nuclear ribon 99.4 2.8E-13 6.1E-18 113.7 8.5 74 273-346 99-172 (335)
84 KOG0149 Predicted RNA-binding 99.4 2.4E-13 5.1E-18 110.7 7.3 70 276-346 13-82 (247)
85 smart00362 RRM_2 RNA recogniti 99.4 4.8E-13 1E-17 92.4 8.0 68 277-346 1-68 (72)
86 PLN03121 nucleic acid binding 99.4 4.1E-13 8.8E-18 111.2 8.8 68 275-346 5-72 (243)
87 KOG4207 Predicted splicing fac 99.4 2.3E-13 5.1E-18 108.2 6.8 71 275-345 13-83 (256)
88 smart00360 RRM RNA recognition 99.4 1.1E-12 2.3E-17 90.3 8.9 71 106-176 1-71 (71)
89 smart00360 RRM RNA recognition 99.4 8.3E-13 1.8E-17 90.8 7.5 67 280-346 1-67 (71)
90 KOG0130 RNA-binding protein RB 99.4 7.5E-13 1.6E-17 98.1 6.6 80 100-179 71-150 (170)
91 PLN03213 repressor of silencin 99.4 1.1E-12 2.4E-17 117.1 8.2 68 275-346 10-79 (759)
92 cd00590 RRM RRM (RNA recogniti 99.4 6E-12 1.3E-16 87.3 10.0 74 103-177 1-74 (74)
93 KOG0107 Alternative splicing f 99.4 9.5E-13 2E-17 102.2 6.1 65 276-345 11-75 (195)
94 KOG0111 Cyclophilin-type pepti 99.3 8.8E-13 1.9E-17 105.9 4.3 84 98-181 7-90 (298)
95 KOG0108 mRNA cleavage and poly 99.3 3.4E-12 7.3E-17 116.5 8.5 79 102-180 19-97 (435)
96 cd00590 RRM RRM (RNA recogniti 99.3 7.9E-12 1.7E-16 86.7 8.2 69 277-346 1-69 (74)
97 KOG0128 RNA-binding protein SA 99.3 2.5E-13 5.3E-18 128.7 0.1 215 100-341 570-801 (881)
98 smart00361 RRM_1 RNA recogniti 99.3 5.5E-12 1.2E-16 86.8 6.1 58 289-346 2-66 (70)
99 KOG4660 Protein Mei2, essentia 99.3 2.2E-11 4.8E-16 110.8 11.4 71 99-174 73-143 (549)
100 KOG0108 mRNA cleavage and poly 99.3 5E-12 1.1E-16 115.4 7.3 71 276-346 19-89 (435)
101 smart00361 RRM_1 RNA recogniti 99.3 2.7E-11 5.9E-16 83.3 8.1 61 115-175 2-69 (70)
102 KOG0129 Predicted RNA-binding 99.3 1.2E-10 2.7E-15 105.1 14.3 168 100-336 258-432 (520)
103 COG0724 RNA-binding proteins ( 99.3 1.6E-11 3.6E-16 108.4 8.5 72 275-346 115-186 (306)
104 PF13893 RRM_5: RNA recognitio 99.3 3.5E-11 7.6E-16 78.9 7.7 56 118-178 1-56 (56)
105 KOG0415 Predicted peptidyl pro 99.2 5.9E-12 1.3E-16 108.1 4.4 85 99-183 237-321 (479)
106 KOG0111 Cyclophilin-type pepti 99.2 7.8E-12 1.7E-16 100.5 3.3 72 275-346 10-81 (298)
107 KOG0130 RNA-binding protein RB 99.2 2.7E-11 5.8E-16 90.0 5.8 71 275-345 72-142 (170)
108 KOG4208 Nucleolar RNA-binding 99.2 5.7E-11 1.2E-15 95.1 7.9 82 100-181 48-130 (214)
109 KOG0120 Splicing factor U2AF, 99.2 1.9E-10 4.2E-15 105.7 11.6 161 100-263 288-490 (500)
110 PF13893 RRM_5: RNA recognitio 99.2 6.4E-11 1.4E-15 77.7 6.1 50 292-346 1-50 (56)
111 KOG4208 Nucleolar RNA-binding 99.1 1.8E-10 3.8E-15 92.3 6.6 70 276-345 50-120 (214)
112 KOG0146 RNA-binding protein ET 99.1 1.1E-10 2.3E-15 96.8 5.5 84 98-181 282-365 (371)
113 KOG4307 RNA binding protein RB 99.0 2E-09 4.4E-14 100.2 11.7 78 100-178 433-511 (944)
114 KOG4454 RNA binding protein (R 99.0 1.3E-10 2.8E-15 93.6 3.1 139 97-247 5-147 (267)
115 KOG4661 Hsp27-ERE-TATA-binding 99.0 7.6E-10 1.6E-14 100.8 8.1 83 98-180 402-484 (940)
116 KOG0128 RNA-binding protein SA 99.0 2.6E-11 5.7E-16 115.2 -1.9 135 100-248 666-800 (881)
117 KOG0112 Large RNA-binding prot 99.0 5.3E-10 1.2E-14 107.0 5.6 159 99-266 370-532 (975)
118 KOG0132 RNA polymerase II C-te 99.0 1.5E-09 3.2E-14 102.4 8.1 76 100-181 420-495 (894)
119 KOG4206 Spliceosomal protein s 99.0 2.5E-09 5.5E-14 87.2 7.9 68 276-346 10-81 (221)
120 KOG4307 RNA binding protein RB 98.9 6.2E-09 1.3E-13 97.1 10.9 151 186-343 316-502 (944)
121 KOG4210 Nuclear localization s 98.9 1.4E-09 3.1E-14 95.0 6.1 161 181-346 88-255 (285)
122 KOG0153 Predicted RNA-binding 98.9 3.4E-09 7.4E-14 91.3 7.9 75 100-180 227-302 (377)
123 PF04059 RRM_2: RNA recognitio 98.9 7.1E-09 1.5E-13 74.7 7.6 69 276-344 2-72 (97)
124 KOG0109 RNA-binding protein LA 98.9 2.3E-09 5E-14 90.1 5.2 76 98-181 75-150 (346)
125 KOG0226 RNA-binding proteins [ 98.9 3.4E-09 7.4E-14 87.5 5.9 159 183-346 98-261 (290)
126 KOG4210 Nuclear localization s 98.9 3.4E-09 7.4E-14 92.6 6.0 164 100-268 87-267 (285)
127 KOG0415 Predicted peptidyl pro 98.9 2.6E-09 5.7E-14 92.0 5.0 75 272-346 236-310 (479)
128 KOG1365 RNA-binding protein Fu 98.9 6.9E-09 1.5E-13 90.4 7.5 144 102-249 162-348 (508)
129 PF04059 RRM_2: RNA recognitio 98.8 4.4E-08 9.6E-13 70.6 9.4 78 102-179 2-85 (97)
130 KOG0132 RNA polymerase II C-te 98.8 8.8E-09 1.9E-13 97.3 6.8 65 275-345 421-485 (894)
131 KOG0112 Large RNA-binding prot 98.8 8.5E-09 1.8E-13 98.9 6.3 146 182-344 373-518 (975)
132 KOG4660 Protein Mei2, essentia 98.7 9E-09 2E-13 94.1 5.0 72 270-346 70-141 (549)
133 KOG4676 Splicing factor, argin 98.7 1.7E-09 3.7E-14 94.3 0.0 200 101-342 7-213 (479)
134 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.6E-08 3.4E-13 92.4 5.9 71 275-345 405-475 (940)
135 KOG4454 RNA binding protein (R 98.7 1.5E-08 3.3E-13 81.8 3.4 136 180-339 8-147 (267)
136 PF11608 Limkain-b1: Limkain b 98.7 1.3E-07 2.9E-12 64.7 7.3 70 102-181 3-77 (90)
137 KOG0533 RRM motif-containing p 98.7 1.2E-07 2.5E-12 80.1 8.6 80 100-180 82-161 (243)
138 KOG3152 TBP-binding protein, a 98.6 4.6E-08 1E-12 81.0 5.7 73 100-172 73-157 (278)
139 KOG0533 RRM motif-containing p 98.6 9E-08 1.9E-12 80.8 7.3 71 275-346 83-153 (243)
140 KOG0116 RasGAP SH3 binding pro 98.6 8.2E-08 1.8E-12 87.5 7.4 79 101-180 288-366 (419)
141 KOG0153 Predicted RNA-binding 98.6 7.6E-08 1.6E-12 83.1 6.2 66 274-345 227-293 (377)
142 KOG1457 RNA binding protein (c 98.6 1.6E-07 3.6E-12 76.2 7.0 69 275-343 34-103 (284)
143 KOG4209 Splicing factor RNPS1, 98.5 1.2E-07 2.5E-12 80.3 5.6 79 100-179 100-178 (231)
144 KOG0226 RNA-binding proteins [ 98.5 1.5E-07 3.3E-12 77.9 4.7 83 97-179 186-268 (290)
145 KOG0116 RasGAP SH3 binding pro 98.5 1.5E-07 3.2E-12 85.9 5.0 69 276-345 289-357 (419)
146 KOG0151 Predicted splicing reg 98.4 5.2E-07 1.1E-11 84.8 7.2 82 98-179 171-255 (877)
147 KOG4209 Splicing factor RNPS1, 98.4 2.8E-07 6E-12 78.0 4.8 71 275-346 101-171 (231)
148 KOG2193 IGF-II mRNA-binding pr 98.4 4.5E-08 9.7E-13 86.4 -1.0 145 182-344 2-146 (584)
149 PF11608 Limkain-b1: Limkain b 98.3 4.4E-06 9.5E-11 57.4 7.8 61 276-346 3-68 (90)
150 KOG0106 Alternative splicing f 98.2 6.1E-07 1.3E-11 74.1 2.8 62 276-345 2-63 (216)
151 KOG2193 IGF-II mRNA-binding pr 98.2 2.7E-07 5.9E-12 81.6 0.6 138 102-250 2-144 (584)
152 KOG3152 TBP-binding protein, a 98.2 9.7E-07 2.1E-11 73.3 3.3 71 276-346 75-157 (278)
153 KOG1548 Transcription elongati 98.2 3.8E-06 8.1E-11 72.8 6.7 71 275-346 134-212 (382)
154 PF08777 RRM_3: RNA binding mo 98.1 5.8E-06 1.3E-10 61.2 6.0 60 101-166 1-60 (105)
155 PF08777 RRM_3: RNA binding mo 98.1 1.3E-05 2.8E-10 59.3 6.7 59 276-340 2-60 (105)
156 KOG2314 Translation initiation 98.1 1.1E-05 2.5E-10 74.1 7.2 70 276-346 59-134 (698)
157 KOG1995 Conserved Zn-finger pr 98.0 6.3E-06 1.4E-10 72.0 4.8 83 100-182 65-155 (351)
158 COG5175 MOT2 Transcriptional r 98.0 1.3E-05 2.8E-10 69.2 6.6 81 101-181 114-203 (480)
159 KOG0151 Predicted splicing reg 98.0 9.5E-06 2.1E-10 76.6 5.4 75 271-345 170-247 (877)
160 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00015 3.2E-09 52.8 7.0 68 276-345 7-81 (100)
161 KOG1995 Conserved Zn-finger pr 97.7 5.1E-05 1.1E-09 66.5 5.3 74 272-345 63-144 (351)
162 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00015 3.2E-09 46.4 5.5 52 276-334 2-53 (53)
163 KOG1855 Predicted RNA-binding 97.7 0.00015 3.2E-09 64.9 7.3 88 252-339 208-308 (484)
164 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00016 3.4E-09 46.2 5.5 52 102-160 2-53 (53)
165 KOG0115 RNA-binding protein p5 97.7 0.00035 7.6E-09 58.5 8.9 89 155-247 6-94 (275)
166 KOG2314 Translation initiation 97.6 0.00054 1.2E-08 63.5 9.7 78 99-177 56-140 (698)
167 COG5175 MOT2 Transcriptional r 97.5 0.00028 6.1E-09 61.2 6.4 72 275-346 114-194 (480)
168 KOG1996 mRNA splicing factor [ 97.3 0.00048 1E-08 58.7 5.8 71 276-346 282-358 (378)
169 PF08952 DUF1866: Domain of un 97.3 0.0013 2.9E-08 50.8 7.2 74 99-181 25-107 (146)
170 KOG2202 U2 snRNP splicing fact 97.3 0.00012 2.7E-09 61.2 1.5 56 290-346 83-139 (260)
171 KOG4849 mRNA cleavage factor I 97.2 0.00033 7.1E-09 61.0 3.9 77 103-179 82-160 (498)
172 PF08952 DUF1866: Domain of un 97.1 0.0018 3.8E-08 50.2 6.2 61 276-345 28-97 (146)
173 PF08675 RNA_bind: RNA binding 97.0 0.0042 9E-08 42.9 6.9 54 276-338 10-63 (87)
174 KOG0129 Predicted RNA-binding 97.0 0.0022 4.7E-08 59.1 7.2 63 99-161 368-431 (520)
175 KOG0115 RNA-binding protein p5 97.0 0.0024 5.2E-08 53.6 6.6 91 238-342 7-97 (275)
176 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0043 9.3E-08 45.2 7.1 78 100-179 5-90 (100)
177 KOG1855 Predicted RNA-binding 96.9 0.00084 1.8E-08 60.2 3.8 68 100-167 230-310 (484)
178 KOG2416 Acinus (induces apopto 96.9 0.00078 1.7E-08 62.8 3.7 76 99-180 442-521 (718)
179 KOG4849 mRNA cleavage factor I 96.8 0.002 4.4E-08 56.2 5.0 72 274-345 79-152 (498)
180 KOG2416 Acinus (induces apopto 96.6 0.0015 3.2E-08 61.1 3.0 67 270-342 439-506 (718)
181 PF08675 RNA_bind: RNA binding 96.6 0.013 2.9E-07 40.5 6.7 56 100-164 8-63 (87)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0026 5.6E-08 51.9 3.3 72 100-171 6-83 (176)
183 PF03467 Smg4_UPF3: Smg-4/UPF3 96.3 0.0074 1.6E-07 49.2 4.8 69 276-344 8-82 (176)
184 KOG2202 U2 snRNP splicing fact 96.2 0.0027 5.9E-08 53.3 2.2 62 117-179 84-146 (260)
185 KOG4676 Splicing factor, argin 96.2 0.0047 1E-07 54.9 3.6 69 276-345 8-79 (479)
186 KOG1996 mRNA splicing factor [ 96.2 0.019 4.2E-07 49.2 7.0 65 115-179 300-365 (378)
187 PF10309 DUF2414: Protein of u 96.1 0.028 6.1E-07 36.8 6.1 53 276-337 6-62 (62)
188 KOG2068 MOT2 transcription fac 96.1 0.0029 6.4E-08 55.4 1.8 81 101-181 77-163 (327)
189 PF07576 BRAP2: BRCA1-associat 96.1 0.076 1.6E-06 39.5 9.1 67 276-344 14-81 (110)
190 KOG0804 Cytoplasmic Zn-finger 96.1 0.022 4.8E-07 51.8 7.3 68 275-344 74-142 (493)
191 KOG2135 Proteins containing th 95.6 0.0094 2E-07 54.4 3.1 83 100-192 371-454 (526)
192 PF10309 DUF2414: Protein of u 95.6 0.091 2E-06 34.5 6.8 53 102-163 6-62 (62)
193 PF07576 BRAP2: BRCA1-associat 95.3 0.16 3.5E-06 37.8 8.2 67 102-170 13-81 (110)
194 PF15023 DUF4523: Protein of u 95.3 0.14 2.9E-06 39.4 7.7 72 100-179 85-160 (166)
195 KOG2253 U1 snRNP complex, subu 95.2 0.022 4.8E-07 54.3 4.1 66 271-345 36-101 (668)
196 KOG4285 Mitotic phosphoprotein 94.1 0.092 2E-06 45.4 4.9 62 276-345 198-259 (350)
197 KOG2318 Uncharacterized conser 94.0 0.39 8.4E-06 45.4 9.0 81 98-178 171-305 (650)
198 KOG2591 c-Mpl binding protein, 93.9 0.16 3.4E-06 47.7 6.3 96 153-256 147-243 (684)
199 KOG0804 Cytoplasmic Zn-finger 93.8 0.2 4.4E-06 45.8 6.7 71 98-170 71-142 (493)
200 PF15023 DUF4523: Protein of u 93.6 0.31 6.8E-06 37.5 6.4 58 276-340 87-148 (166)
201 PF04847 Calcipressin: Calcipr 93.6 0.22 4.7E-06 40.8 6.0 60 114-179 8-69 (184)
202 KOG2591 c-Mpl binding protein, 93.4 0.18 3.8E-06 47.3 5.8 70 99-175 173-246 (684)
203 KOG2891 Surface glycoprotein [ 92.9 0.18 4E-06 43.0 4.7 117 226-342 76-247 (445)
204 KOG4285 Mitotic phosphoprotein 92.5 0.55 1.2E-05 40.8 7.0 69 103-179 199-268 (350)
205 PF04847 Calcipressin: Calcipr 91.9 0.32 7E-06 39.9 4.8 52 288-345 8-61 (184)
206 KOG2068 MOT2 transcription fac 91.7 0.14 3E-06 45.1 2.7 71 276-346 78-154 (327)
207 PF04931 DNA_pol_phi: DNA poly 91.5 0.077 1.7E-06 54.0 1.0 8 112-119 728-735 (784)
208 KOG4574 RNA-binding protein (c 91.3 0.17 3.6E-06 49.9 3.0 72 103-180 300-373 (1007)
209 PF07292 NID: Nmi/IFP 35 domai 91.2 0.2 4.4E-06 35.5 2.6 68 228-296 1-73 (88)
210 PF11767 SET_assoc: Histone ly 90.5 2 4.3E-05 28.7 6.7 55 112-175 11-65 (66)
211 KOG4574 RNA-binding protein (c 90.0 0.15 3.2E-06 50.2 1.4 60 277-342 300-359 (1007)
212 KOG2253 U1 snRNP complex, subu 89.9 0.24 5.3E-06 47.5 2.7 70 99-177 38-107 (668)
213 KOG2135 Proteins containing th 89.1 0.21 4.5E-06 46.0 1.6 68 271-345 368-436 (526)
214 PF03880 DbpA: DbpA RNA bindin 89.1 2.7 5.8E-05 28.7 6.8 59 111-178 11-74 (74)
215 PF07292 NID: Nmi/IFP 35 domai 89.1 0.99 2.2E-05 32.0 4.7 55 146-201 1-72 (88)
216 PF04931 DNA_pol_phi: DNA poly 89.0 0.17 3.7E-06 51.6 1.1 8 117-124 740-747 (784)
217 PF04147 Nop14: Nop14-like fam 88.6 0.43 9.3E-06 48.9 3.6 14 113-126 426-439 (840)
218 KOG4483 Uncharacterized conser 87.4 3.3 7.2E-05 37.5 7.9 55 100-161 390-445 (528)
219 PF03880 DbpA: DbpA RNA bindin 83.7 6 0.00013 27.0 6.2 53 285-346 11-68 (74)
220 KOG2318 Uncharacterized conser 83.6 3.3 7.1E-05 39.5 6.3 70 275-344 174-295 (650)
221 PF11767 SET_assoc: Histone ly 81.9 6.7 0.00014 26.2 5.6 50 286-344 11-60 (66)
222 KOG1999 RNA polymerase II tran 77.2 10 0.00022 38.7 7.6 29 141-169 208-236 (1024)
223 smart00596 PRE_C2HC PRE_C2HC d 76.5 5.9 0.00013 26.5 4.0 63 116-181 2-65 (69)
224 PF02714 DUF221: Domain of unk 74.9 6 0.00013 35.7 5.2 56 146-203 1-56 (325)
225 PF10567 Nab6_mRNP_bdg: RNA-re 74.6 8.4 0.00018 33.7 5.5 62 272-333 12-80 (309)
226 KOG2295 C2H2 Zn-finger protein 71.2 0.63 1.4E-05 43.8 -2.0 70 274-343 230-299 (648)
227 TIGR02542 B_forsyth_147 Bacter 70.9 14 0.0003 27.4 5.2 107 108-235 10-129 (145)
228 PF03468 XS: XS domain; Inter 70.7 2.8 6E-05 31.6 1.7 57 276-335 9-75 (116)
229 KOG4410 5-formyltetrahydrofola 70.6 19 0.0004 31.4 6.7 47 275-327 330-377 (396)
230 KOG4019 Calcineurin-mediated s 70.4 3.1 6.8E-05 33.5 1.9 64 276-345 11-79 (193)
231 PF07530 PRE_C2HC: Associated 70.0 12 0.00026 25.1 4.4 63 116-181 2-65 (68)
232 KOG4410 5-formyltetrahydrofola 69.8 6.4 0.00014 34.1 3.7 49 101-154 330-378 (396)
233 KOG2295 C2H2 Zn-finger protein 67.8 0.77 1.7E-05 43.3 -2.2 74 100-173 230-303 (648)
234 KOG4019 Calcineurin-mediated s 66.8 5.7 0.00012 32.1 2.7 75 101-181 10-90 (193)
235 PF10567 Nab6_mRNP_bdg: RNA-re 66.2 15 0.00033 32.1 5.3 149 100-248 14-214 (309)
236 PF15513 DUF4651: Domain of un 62.3 22 0.00047 23.3 4.3 17 116-132 9-25 (62)
237 KOG4483 Uncharacterized conser 61.6 34 0.00074 31.3 6.8 55 275-336 391-446 (528)
238 PF03468 XS: XS domain; Inter 60.7 9.1 0.0002 28.8 2.7 55 103-160 10-74 (116)
239 KOG2141 Protein involved in hi 59.1 4.7 0.0001 39.6 1.2 27 319-345 623-649 (822)
240 PF05285 SDA1: SDA1; InterPro 57.2 7.8 0.00017 35.0 2.2 6 114-119 191-196 (324)
241 COG5193 LHP1 La protein, small 55.1 5.8 0.00013 36.2 1.0 60 276-335 175-244 (438)
242 PF14111 DUF4283: Domain of un 54.6 12 0.00025 29.5 2.6 96 112-214 28-137 (153)
243 PRK14548 50S ribosomal protein 52.5 66 0.0014 22.6 5.8 56 104-162 23-80 (84)
244 KOG4365 Uncharacterized conser 52.2 4.7 0.0001 37.1 0.0 61 276-337 4-64 (572)
245 KOG2141 Protein involved in hi 52.0 8.7 0.00019 37.9 1.7 14 283-296 552-565 (822)
246 PF02724 CDC45: CDC45-like pro 50.8 7 0.00015 38.8 0.9 8 236-243 402-409 (622)
247 KOG4213 RNA-binding protein La 50.0 26 0.00055 28.4 3.7 57 276-336 112-169 (205)
248 PF11823 DUF3343: Protein of u 49.4 19 0.00041 24.4 2.7 28 318-345 2-29 (73)
249 KOG4008 rRNA processing protei 48.0 15 0.00032 31.1 2.2 32 274-305 39-70 (261)
250 PRK14548 50S ribosomal protein 47.8 70 0.0015 22.5 5.3 53 282-337 27-81 (84)
251 TIGR03636 L23_arch archaeal ri 47.5 80 0.0017 21.8 5.5 56 278-336 16-73 (77)
252 KOG4008 rRNA processing protei 47.2 18 0.00039 30.6 2.6 36 97-132 36-71 (261)
253 KOG1295 Nonsense-mediated deca 46.7 27 0.00059 31.8 3.8 69 276-344 8-79 (376)
254 PF03439 Spt5-NGN: Early trans 46.5 42 0.0009 23.5 4.1 36 301-341 33-68 (84)
255 KOG2038 CAATT-binding transcri 45.9 11 0.00023 37.6 1.3 16 106-121 960-975 (988)
256 KOG0262 RNA polymerase I, larg 44.9 22 0.00048 37.6 3.3 9 276-284 1615-1623(1640)
257 KOG1295 Nonsense-mediated deca 44.0 26 0.00056 31.9 3.3 69 101-169 7-78 (376)
258 PF05285 SDA1: SDA1; InterPro 44.0 10 0.00022 34.3 0.8 10 192-201 230-239 (324)
259 PF14111 DUF4283: Domain of un 43.3 27 0.0006 27.3 3.2 84 225-311 55-141 (153)
260 TIGR03636 L23_arch archaeal ri 42.5 1.1E+02 0.0024 21.1 5.9 56 104-162 16-73 (77)
261 KOG0262 RNA polymerase I, larg 41.8 24 0.00051 37.3 3.0 11 287-297 1589-1599(1640)
262 COG5193 LHP1 La protein, small 39.3 13 0.00028 34.0 0.7 62 100-161 173-244 (438)
263 PF11823 DUF3343: Protein of u 39.1 1.2E+02 0.0025 20.4 5.3 30 144-173 2-31 (73)
264 KOG0156 Cytochrome P450 CYP2 s 35.3 74 0.0016 30.7 5.2 59 278-346 35-96 (489)
265 KOG4213 RNA-binding protein La 34.1 58 0.0013 26.4 3.5 56 102-161 112-168 (205)
266 KOG4365 Uncharacterized conser 32.5 7.9 0.00017 35.7 -1.7 77 102-179 4-80 (572)
267 PRK08559 nusG transcription an 32.0 1.5E+02 0.0032 23.5 5.6 33 302-339 36-68 (153)
268 PF00403 HMA: Heavy-metal-asso 31.2 1.4E+02 0.0031 18.9 7.0 54 277-336 1-58 (62)
269 PRK11901 hypothetical protein; 30.7 1.2E+02 0.0026 27.3 5.2 62 273-339 243-306 (327)
270 PF02714 DUF221: Domain of unk 27.2 1.4E+02 0.003 26.8 5.4 57 228-298 1-57 (325)
271 KOG3424 40S ribosomal protein 27.2 1.7E+02 0.0037 21.9 4.7 45 286-331 34-83 (132)
272 TIGR00927 2A1904 K+-dependent 26.5 24 0.00053 36.4 0.3 10 143-152 931-940 (1096)
273 COG0445 GidA Flavin-dependent 24.4 2.5E+02 0.0054 27.6 6.4 75 142-217 235-336 (621)
274 COG5584 Predicted small secret 23.1 1.7E+02 0.0038 21.0 3.9 32 108-139 29-60 (103)
275 KOG2187 tRNA uracil-5-methyltr 23.1 76 0.0016 30.5 2.8 71 105-180 29-100 (534)
276 COG5507 Uncharacterized conser 23.0 85 0.0018 22.6 2.4 20 144-163 67-86 (117)
277 KOG2773 Apoptosis antagonizing 22.8 48 0.001 31.0 1.5 7 284-290 390-396 (483)
278 TIGR00927 2A1904 K+-dependent 22.6 31 0.00068 35.7 0.3 7 104-110 907-913 (1096)
279 KOG1834 Calsyntenin [Extracell 21.9 35 0.00075 33.5 0.4 11 22-32 865-875 (952)
280 PF15407 Spo7_2_N: Sporulation 21.8 37 0.00081 22.7 0.4 24 99-122 25-48 (67)
281 COG4547 CobT Cobalamin biosynt 21.0 55 0.0012 30.8 1.5 46 276-323 552-602 (620)
282 KOG2147 Nucleolar protein invo 20.9 1.2E+02 0.0027 30.4 3.8 14 113-126 396-409 (823)
283 COG5638 Uncharacterized conser 20.6 2.9E+02 0.0062 25.7 5.8 37 100-136 145-186 (622)
284 PF08156 NOP5NT: NOP5NT (NUC12 20.5 39 0.00085 22.5 0.3 39 290-338 27-65 (67)
285 smart00457 MACPF membrane-atta 20.4 80 0.0017 26.0 2.2 28 280-307 30-59 (194)
286 PTZ00191 60S ribosomal protein 20.3 3.4E+02 0.0073 21.4 5.4 51 282-335 88-140 (145)
287 COG5594 Uncharacterized integr 20.1 1.4E+02 0.0031 30.4 4.2 38 142-179 356-394 (827)
288 COG3254 Uncharacterized conser 20.0 2.5E+02 0.0053 20.7 4.3 43 290-335 27-69 (105)
289 PF14026 DUF4242: Protein of u 20.0 3E+02 0.0066 18.8 6.9 62 278-342 3-71 (77)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.4e-47 Score=346.48 Aligned_cols=245 Identities=20% Similarity=0.379 Sum_probs=219.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|||+|||+++++++|+.+|++||+|.+|+|++++.+|+++|||||+|.+.++|.+||..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cc------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCC
Q 019068 180 AK------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (346)
Q Consensus 180 ~~------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 253 (346)
+. .+|||+|||+.+++++|+.+|..+|. |..++++.+ ..++.++|||||+|.+.++|..|+..|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 43 57999999999999999999999999 999999988 67889999999999999999999999999765545
Q ss_pred CCCceeeecCCCCCCC----------------------------------------------------------------
Q 019068 254 TNAPTVSWADPRNVDS---------------------------------------------------------------- 269 (346)
Q Consensus 254 ~~~~~v~~~~~~~~~~---------------------------------------------------------------- 269 (346)
...+.+.|+.......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 5667777764332000
Q ss_pred ------------------------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeC
Q 019068 270 ------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (346)
Q Consensus 270 ------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 325 (346)
.....+.+|||+|||..+++++|+++|++||.|.+++|++++.++.++|||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 00111236999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCcccCCCC
Q 019068 326 ERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 326 ~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.++|.+|+..|||+.|+||+
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~ 340 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRV 340 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeE
Confidence 999999999999999999984
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-45 Score=320.18 Aligned_cols=243 Identities=42% Similarity=0.680 Sum_probs=231.2
Q ss_pred hCCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc-cCcee
Q 019068 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF-KGKKI 173 (346)
Q Consensus 95 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~g~~l 173 (346)
...++.++-|||+.||.++.+++|..+|.+.|+|-.+|+++++.+|.++|||||.|++++.|+.|++.||+..| .|+.|
T Consensus 77 g~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 77 GPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999988 69999
Q ss_pred EEeecCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCC
Q 019068 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (346)
Q Consensus 174 ~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 253 (346)
.|..+..+++|||+|||++.++++|.+.++..+++|..|.+.+.+....++||||||+|.++..|..|..+|-...+++.
T Consensus 157 gvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw 236 (506)
T KOG0117|consen 157 GVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW 236 (506)
T ss_pred EEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeec
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCCCC-cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHH
Q 019068 254 TNAPTVSWADPRNVDS-SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332 (346)
Q Consensus 254 ~~~~~v~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 332 (346)
|+.+.|.|+.+...+. .....-+.|||+||+.++|++.|+.+|+.||.|..|+.++| ||||.|.+.++|.+
T Consensus 237 gn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davk 308 (506)
T KOG0117|consen 237 GNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVK 308 (506)
T ss_pred CCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHH
Confidence 9999999999987665 44555689999999999999999999999999999999866 89999999999999
Q ss_pred HHHHhcCcccCCC
Q 019068 333 ALKNTEKYELDGD 345 (346)
Q Consensus 333 Al~~lng~~i~gr 345 (346)
|+..+||+.|+|.
T Consensus 309 Am~~~ngkeldG~ 321 (506)
T KOG0117|consen 309 AMKETNGKELDGS 321 (506)
T ss_pred HHHHhcCceecCc
Confidence 9999999999995
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-42 Score=280.54 Aligned_cols=244 Identities=22% Similarity=0.393 Sum_probs=223.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..+.|.|.-||.++|.++|+.+|...|.|++|++++++.+|.+.||+||.|.++.+|.+|+..|||..+..++|+|++++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCC
Q 019068 180 AK------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (346)
Q Consensus 180 ~~------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 253 (346)
|. ..|||.+||+.++..+|..+|++||. |...||+.+ ..+|.++|.|||.|.....|..|+..|++....-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 76 57999999999999999999999999 888888888 78899999999999999999999999999776666
Q ss_pred CCCceeeecCCCCCCC-----------------------------------------------------------ccccc
Q 019068 254 TNAPTVSWADPRNVDS-----------------------------------------------------------SGASQ 274 (346)
Q Consensus 254 ~~~~~v~~~~~~~~~~-----------------------------------------------------------~~~~~ 274 (346)
..++.|.++...+... +....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 7778888775443221 00111
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.-+|||.||..+.++.-|+++|.+||.|..|++++|..++..+|||||.+.+-++|.-|+..|||+.+++|
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 58999999999999999999999999999999999999999999999999999999999999999999997
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=7.3e-42 Score=320.41 Aligned_cols=240 Identities=35% Similarity=0.600 Sum_probs=215.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc-CceeEEe
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCS 176 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 176 (346)
+...++|||+|||+++++++|+.+|++||.|..++|+++ .+|.++|||||+|.+.++|.+||+.||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 78999999999999999999999999999985 8899999
Q ss_pred ecCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCC
Q 019068 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (346)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 256 (346)
.+...++|||+|||+.+++++|.+.|..++..+..+.+.......++++|||||+|.+..+|..|+..|....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99889999999999999999999999999876766666555456678999999999999999999999887777889999
Q ss_pred ceeeecCCCCCCC-cccccceEEEEcCCCcccCHHHHHHHhhcc--CcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHH
Q 019068 257 PTVSWADPRNVDS-SGASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (346)
Q Consensus 257 ~~v~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 333 (346)
+.|.|+.+..... ......++|||+|||..+++++|+++|+.| |.|.+|.++ ++||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHH
Confidence 9999998765433 223445899999999999999999999999 999999874 46999999999999999
Q ss_pred HHHhcCcccCCCC
Q 019068 334 LKNTEKYELDGDH 346 (346)
Q Consensus 334 l~~lng~~i~gr~ 346 (346)
+..|||..|.||+
T Consensus 286 i~~lnG~~i~Gr~ 298 (578)
T TIGR01648 286 MDELNGKELEGSE 298 (578)
T ss_pred HHHhCCCEECCEE
Confidence 9999999999974
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.1e-40 Score=320.49 Aligned_cols=235 Identities=24% Similarity=0.431 Sum_probs=213.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc--
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA-- 180 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~-- 180 (346)
+|||+|||+++|+++|+.+|++||.|.+|+++++..|++++|||||+|.+.++|.+|+..+++..+.|+.|+|.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred ------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCC
Q 019068 181 ------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (346)
Q Consensus 181 ------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 254 (346)
..+|||+|||+.+++++|+.+|+.+|. |..|+++.+ .+|+++|||||.|.+.++|..|+..+++. .+.+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~-i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~--~~~~ 156 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN-ILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGM--LLND 156 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCC-cceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhccc--EecC
Confidence 247999999999999999999999999 999999988 57889999999999999999999999884 5778
Q ss_pred CCceeeecCCCCCC-CcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHH
Q 019068 255 NAPTVSWADPRNVD-SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (346)
Q Consensus 255 ~~~~v~~~~~~~~~-~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 333 (346)
+.+.+.....+... .......++|||+|||.++|+++|+++|+.||.|.++.++++.. +.++|||||+|.+.++|.+|
T Consensus 157 ~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~-g~~~G~afV~F~~~e~A~~A 235 (562)
T TIGR01628 157 KEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS-GRSRGFAFVNFEKHEDAAKA 235 (562)
T ss_pred ceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHH
Confidence 88888776655443 22334457899999999999999999999999999999998864 55689999999999999999
Q ss_pred HHHhcCcccC
Q 019068 334 LKNTEKYELD 343 (346)
Q Consensus 334 l~~lng~~i~ 343 (346)
+..|||..|.
T Consensus 236 v~~l~g~~i~ 245 (562)
T TIGR01628 236 VEEMNGKKIG 245 (562)
T ss_pred HHHhCCcEec
Confidence 9999999998
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.1e-38 Score=308.60 Aligned_cols=242 Identities=24% Similarity=0.396 Sum_probs=214.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
...+|||+|||.++++++|+.+|+.||.|.+|+++.+. +|.++|||||.|.+.++|.+|+..++|..+.|+.|.|....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 35679999999999999999999999999999999885 68899999999999999999999999999999999986543
Q ss_pred c-----------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCC
Q 019068 180 A-----------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (346)
Q Consensus 180 ~-----------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 248 (346)
. ..+|||+|||+.+++++|+.+|+.||. |..+.++++ .++.++|||||.|.+.++|.+|+..+++.
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 2 246999999999999999999999999 999999988 57889999999999999999999999986
Q ss_pred cccCC--CCCceeeecCCCCCCC--------------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCC
Q 019068 249 NFKLG--TNAPTVSWADPRNVDS--------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312 (346)
Q Consensus 249 ~~~~~--~~~~~v~~~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~ 312 (346)
.+... +..+.+.++..+.... .......+|||+|||..+++++|+++|+.||.|.+++++.+ .
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~ 321 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-E 321 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-C
Confidence 54321 7778887776554331 11334578999999999999999999999999999999999 5
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 313 ~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++.++|||||+|.+.++|.+|+..|||+.|+||+
T Consensus 322 ~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~ 355 (562)
T TIGR01628 322 KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKP 355 (562)
T ss_pred CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCce
Confidence 6667999999999999999999999999999984
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1e-37 Score=294.60 Aligned_cols=229 Identities=20% Similarity=0.275 Sum_probs=195.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh--cCccccCceeEEeec
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIRCSTS 178 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~~ 178 (346)
+++|||+|||+.+++++|+.+|++||.|.+|.+++ +++||||+|.+.++|.+|+..+ ++..+.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 68999999999999999999999999999999986 3689999999999999999864 788999999999887
Q ss_pred Ccc------------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHH
Q 019068 179 QAK------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (346)
Q Consensus 179 ~~~------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~ 240 (346)
... .+|||.||++.++++.|+.+|+.||. |..+.+.++ . .+++|||+|.+.++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~-~----~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTK-N----NVFQALVEFESVNSAQH 149 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEec-C----CceEEEEEECCHHHHHH
Confidence 421 15899999999999999999999999 999998776 2 24689999999999999
Q ss_pred HHHHhcCCcccCCCCCceeeecCCCCCC----------------------------------------------------
Q 019068 241 SRQKMTNPNFKLGTNAPTVSWADPRNVD---------------------------------------------------- 268 (346)
Q Consensus 241 a~~~l~~~~~~~~~~~~~v~~~~~~~~~---------------------------------------------------- 268 (346)
|+..|++..+.-+++.+++.|+.+....
T Consensus 150 A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (481)
T TIGR01649 150 AKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHG 229 (481)
T ss_pred HHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCC
Confidence 9999999876544455555554321100
Q ss_pred ---------------------------------------CcccccceEEEEcCCCc-ccCHHHHHHHhhccCcEEEEEeC
Q 019068 269 ---------------------------------------SSGASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVP 308 (346)
Q Consensus 269 ---------------------------------------~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~ 308 (346)
....+++++|||+|||. .+++++|+++|+.||.|.+|+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~ 309 (481)
T TIGR01649 230 GPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFM 309 (481)
T ss_pred CCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 00012457999999997 69999999999999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 309 ~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+++ +|||||+|.+.++|..||..|||..|.|++
T Consensus 310 ~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~ 342 (481)
T TIGR01649 310 KNK-----KETALIEMADPYQAQLALTHLNGVKLFGKP 342 (481)
T ss_pred eCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 874 699999999999999999999999999974
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.6e-37 Score=292.34 Aligned_cols=239 Identities=23% Similarity=0.415 Sum_probs=208.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+.+++++|+.+|++||.|..|+++.+..+|.++|||||+|.+.++|.+||. |+|..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 357899999999999999999999999999999999999999999999999999999999995 9999999999999775
Q ss_pred Cc------------------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHH
Q 019068 179 QA------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (346)
Q Consensus 179 ~~------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~ 240 (346)
.. ..+|||+|||+.+++++|+.+|+.+|. |..+.++++ ..+|.++|||||+|.+.++|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHHH
Confidence 31 267999999999999999999999999 999999998 7788999999999999999999
Q ss_pred HHHHhcCCcccCCCCCceeeecCCCCCC----------------------------------------------------
Q 019068 241 SRQKMTNPNFKLGTNAPTVSWADPRNVD---------------------------------------------------- 268 (346)
Q Consensus 241 a~~~l~~~~~~~~~~~~~v~~~~~~~~~---------------------------------------------------- 268 (346)
|+..|++ +.+.|+.+.|.|+......
T Consensus 244 A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T TIGR01622 244 ALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIAL 321 (457)
T ss_pred HHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhh
Confidence 9999998 5578899999884311000
Q ss_pred ----------------------------------CcccccceEEEEcCCCcccC----------HHHHHHHhhccCcEEE
Q 019068 269 ----------------------------------SSGASQVKAVYVKNLPRNVT----------QDQLKKLFEHHGRITK 304 (346)
Q Consensus 269 ----------------------------------~~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G~v~~ 304 (346)
......+.+|+|.||....+ .++|++.|.+||.|..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~ 401 (457)
T TIGR01622 322 MQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVH 401 (457)
T ss_pred hccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeE
Confidence 00113458899999954433 3689999999999999
Q ss_pred EEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 305 VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 305 v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
|.+.... +.|++||+|.++++|.+|++.|||++|+||.
T Consensus 402 v~v~~~~----~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~ 439 (457)
T TIGR01622 402 IYVDTKN----SAGKIYLKFSSVDAALAAFQALNGRYFGGKM 439 (457)
T ss_pred EEEeCCC----CceeEEEEECCHHHHHHHHHHhcCcccCCeE
Confidence 9997432 3699999999999999999999999999984
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=277.23 Aligned_cols=240 Identities=25% Similarity=0.502 Sum_probs=214.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
+.||||++||+.++.++|..+|+.+|+|..+.++.++.++.++|||||.|.-.+++..|+...++..|.|+.|+|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999988752
Q ss_pred --------------------------------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEE
Q 019068 181 --------------------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228 (346)
Q Consensus 181 --------------------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~ 228 (346)
+++|+|+|||+.+...+|+.+|+.+|. |..+.|++. ..|+-.|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 267999999999999999999999999 999999976 444445999
Q ss_pred EEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCCc--------------------------------------
Q 019068 229 FIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS-------------------------------------- 270 (346)
Q Consensus 229 ~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------------------- 270 (346)
||.|....+|..|+..+++. .+.|+++.|.|+-++..=..
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999984 58899999999965431000
Q ss_pred ------c------------------------------------------cccceEEEEcCCCcccCHHHHHHHhhccCcE
Q 019068 271 ------G------------------------------------------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302 (346)
Q Consensus 271 ------~------------------------------------------~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v 302 (346)
. ..-..||||+|||+.+|+++|.+.|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 0 0003899999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh-----cC-cccCCC
Q 019068 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT-----EK-YELDGD 345 (346)
Q Consensus 303 ~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l-----ng-~~i~gr 345 (346)
.++.|+.++.|+.++|.|||.|.+...|..||... .| +.|.||
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 99999999999999999999999999999999976 33 667776
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.6e-36 Score=290.86 Aligned_cols=236 Identities=25% Similarity=0.446 Sum_probs=196.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc------------CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSI------------GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~------------G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 167 (346)
..++|||+|||+.+++++|+.+|.+| +.|..+.+ +..+|||||+|.+.++|..|| .|+|..
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 46789999999999999999999985 23444444 346899999999999999999 599999
Q ss_pred ccCceeEEeecC-----------------------------------ccccceecCCCCCCCHHHHHHHHHhhCCCeeEE
Q 019068 168 FKGKKIRCSTSQ-----------------------------------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212 (346)
Q Consensus 168 ~~g~~l~v~~~~-----------------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~ 212 (346)
+.|+.|.|.... ..++|||+|||+.+++++|+++|..||. |..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEE
Confidence 999999996321 1257999999999999999999999999 9999
Q ss_pred EEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCC-----------------------
Q 019068 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS----------------------- 269 (346)
Q Consensus 213 ~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~----------------------- 269 (346)
.++++ ..+|.++|||||+|.+...|..|+..|++. .+.++.+.|.++.......
T Consensus 326 ~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 326 NLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred EEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 99998 778999999999999999999999999984 4788888888874332111
Q ss_pred -cccccceEEEEcCCCccc----------CHHHHHHHhhccCcEEEEEeCCCC---CCCCCCCEEEEEeCCHHHHHHHHH
Q 019068 270 -SGASQVKAVYVKNLPRNV----------TQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKALK 335 (346)
Q Consensus 270 -~~~~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Al~ 335 (346)
....++.+|+|.||+... ..++|+++|.+||.|..|.|++.. ..+.+.|+|||+|.+.++|.+|+.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 012246889999996421 236899999999999999998753 233456899999999999999999
Q ss_pred HhcCcccCCCC
Q 019068 336 NTEKYELDGDH 346 (346)
Q Consensus 336 ~lng~~i~gr~ 346 (346)
.|||++|+||+
T Consensus 483 ~lnGr~~~gr~ 493 (509)
T TIGR01642 483 GMNGRKFNDRV 493 (509)
T ss_pred HcCCCEECCeE
Confidence 99999999984
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.6e-36 Score=281.67 Aligned_cols=161 Identities=21% Similarity=0.413 Sum_probs=147.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+.+++++|+.+|++||.|.+|+++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred Cc-----------------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHH
Q 019068 179 QA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241 (346)
Q Consensus 179 ~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a 241 (346)
.. .++|||+|||+.+++++|+.+|+.||. |..++++++ ..++.++|||||.|.+.++|..|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHHH
Confidence 31 258999999999999999999999999 999999999 67889999999999999999999
Q ss_pred HHHhcCCcccCCCCCceeeecC
Q 019068 242 RQKMTNPNFKLGTNAPTVSWAD 263 (346)
Q Consensus 242 ~~~l~~~~~~~~~~~~~v~~~~ 263 (346)
+..|++. .++|+.++|.++.
T Consensus 263 I~amNg~--elgGr~LrV~kAi 282 (612)
T TIGR01645 263 IASMNLF--DLGGQYLRVGKCV 282 (612)
T ss_pred HHHhCCC--eeCCeEEEEEecC
Confidence 9999974 4667777776654
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=9.4e-35 Score=274.47 Aligned_cols=230 Identities=19% Similarity=0.257 Sum_probs=194.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC--ceeEEeec
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 178 (346)
-.+|||+||++.+++++|+++|+.||.|.+|.+.++. ..++|||+|.+.++|.+|+..|||..|.| ..|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 3479999999999999999999999999999998754 24799999999999999999999999864 35555432
Q ss_pred C-------------------------------------------------------------------------------
Q 019068 179 Q------------------------------------------------------------------------------- 179 (346)
Q Consensus 179 ~------------------------------------------------------------------------------- 179 (346)
.
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------ccccceecCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChh
Q 019068 180 ----------------------AKYRLFIGNIPR-NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236 (346)
Q Consensus 180 ----------------------~~~~l~v~~l~~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~ 236 (346)
+..+|||+|||+ .++++.|+.+|+.||. |..++++++ .+|||||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 123799999998 6999999999999999 999999887 3699999999999
Q ss_pred HHHHHHHHhcCCcccCCCCCceeeecCCCCCCC---------------------------------cccccceEEEEcCC
Q 019068 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---------------------------------SGASQVKAVYVKNL 283 (346)
Q Consensus 237 ~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~---------------------------------~~~~~~~~l~V~nL 283 (346)
+|..|+..|++. .+.|+.++|.++....... ...+++.+|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999985 4688999998774331100 00134579999999
Q ss_pred CcccCHHHHHHHhhccCc--EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 284 PRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 284 p~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
|.++++++|+++|+.||. |..+++.+...+ ++|+|||+|.+.++|..||..|||+.|.|+
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~--~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~ 464 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNE--RSKMGLLEWESVEDAVEALIALNHHQLNEP 464 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCC--cceeEEEEcCCHHHHHHHHHHhcCCccCCC
Confidence 999999999999999998 888988765533 368999999999999999999999999987
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-35 Score=238.76 Aligned_cols=212 Identities=21% Similarity=0.435 Sum_probs=180.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHH-HhcCccccCceeEEee
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-KLNNTEFKGKKIRCST 177 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~-~l~~~~~~g~~l~v~~ 177 (346)
...+||||+||...+|++-|..||.+.|+|..++++.+.- + ...|.. ..+.+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~---------------v~wa~~p~nQsk~t~~~------ 61 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K---------------VNWATAPGNQSKPTSNQ------ 61 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c---------------cccccCcccCCCCcccc------
Confidence 4578999999999999999999999999999999988620 0 000000 0111111111
Q ss_pred cCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCc
Q 019068 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (346)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 257 (346)
.-.+||+.|.+.++-+.|++.|.+||. |+.++++|| ..++++||||||.|.+..+|+.|+..|++.. |++|.+
T Consensus 62 ---hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW--lG~R~I 134 (321)
T KOG0148|consen 62 ---HFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQW--LGRRTI 134 (321)
T ss_pred ---ceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCee--ecccee
Confidence 235799999999999999999999999 999999999 7899999999999999999999999999976 899999
Q ss_pred eeeecCCCCCCC------------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeC
Q 019068 258 TVSWADPRNVDS------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (346)
Q Consensus 258 ~v~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 325 (346)
+-.|+..+.... .+.+.+++|||+|++..++++.|++.|++||.|..||+.++ +||+||.|.
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~ 208 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFE 208 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEec
Confidence 999998776332 23445699999999999999999999999999999999999 499999999
Q ss_pred CHHHHHHHHHHhcCcccCCC
Q 019068 326 ERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 326 ~~~~A~~Al~~lng~~i~gr 345 (346)
+.+.|..||-.+||..|+|.
T Consensus 209 tkEaAahAIv~mNntei~G~ 228 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQ 228 (321)
T ss_pred chhhHHHHHHHhcCceeCce
Confidence 99999999999999999986
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=251.07 Aligned_cols=243 Identities=21% Similarity=0.415 Sum_probs=214.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc-c--CceeEEee
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF-K--GKKIRCST 177 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~--g~~l~v~~ 177 (346)
.-.+||+-||..+++.+|+.+|.+||.|..|.|++|+.|+.++|||||.|.+.++|.+|+..||.... - -..|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 44699999999999999999999999999999999999999999999999999999999999997654 3 36788988
Q ss_pred cCc-------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcc
Q 019068 178 SQA-------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250 (346)
Q Consensus 178 ~~~-------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~ 250 (346)
+.. .++|||+-|++.+++.+++++|+.||. |.+|.|+++ ..+.+||+|||.|.+.+.|..|++.|++...
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhcccee
Confidence 864 468999999999999999999999999 999999999 6788999999999999999999999998642
Q ss_pred -cCCCCCceeeecCCCCCCCccc---------------------------------------------------------
Q 019068 251 -KLGTNAPTVSWADPRNVDSSGA--------------------------------------------------------- 272 (346)
Q Consensus 251 -~~~~~~~~v~~~~~~~~~~~~~--------------------------------------------------------- 272 (346)
.-...++.|.|+++........
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 2334566777776554111000
Q ss_pred ----------------------------------------c---------------------------------------
Q 019068 273 ----------------------------------------S--------------------------------------- 273 (346)
Q Consensus 273 ----------------------------------------~--------------------------------------- 273 (346)
+
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence 0
Q ss_pred ------------------------------------------------------------------------cceEEEEc
Q 019068 274 ------------------------------------------------------------------------QVKAVYVK 281 (346)
Q Consensus 274 ------------------------------------------------------------------------~~~~l~V~ 281 (346)
....|||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 04789999
Q ss_pred CCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 282 NLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 282 nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+||-+.-+.+|...|.+||.|.+.++..++.++-++.|+||.|++..+|..||..|||+.|++++
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Kr 495 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKR 495 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999874
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-30 Score=234.26 Aligned_cols=230 Identities=27% Similarity=0.445 Sum_probs=207.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCcc
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (346)
..|||+ +++|+..|..+|+.+|+|.+++++++. | +.|||||.|.++++|.+||..+|...+.|+.+++-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999998 6 9999999999999999999999999999999999998754
Q ss_pred -ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceee
Q 019068 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (346)
Q Consensus 182 -~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 260 (346)
..+||.||++.++...|..+|+.+|. |.+|++.++ ..| ++|| ||.|.+.+.|.+|+..+++ ..+.+..+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~ng--~ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKLNG--MLLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHhcC--cccCCCeeEEe
Confidence 34899999999999999999999999 999999998 344 9999 9999999999999999998 45889999988
Q ss_pred ecCCCCCCCc----ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHH
Q 019068 261 WADPRNVDSS----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (346)
Q Consensus 261 ~~~~~~~~~~----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 336 (346)
....+..... ....-+.++|.|++..++...|..+|+.||.|.++.++++..+. ++||+||.|.++++|..|+..
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHh
Confidence 7766543321 22334789999999999999999999999999999999998777 589999999999999999999
Q ss_pred hcCcccCCC
Q 019068 337 TEKYELDGD 345 (346)
Q Consensus 337 lng~~i~gr 345 (346)
|+|..++|.
T Consensus 228 l~~~~~~~~ 236 (369)
T KOG0123|consen 228 LNGKIFGDK 236 (369)
T ss_pred ccCCcCCcc
Confidence 999988753
No 16
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=221.25 Aligned_cols=242 Identities=20% Similarity=0.405 Sum_probs=207.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
-++|||+.|.+.+.++.|+..|..||+|++|.+..++.|++++|||||+|.-++.|..|++.|||..+.||.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999986542
Q ss_pred -----------------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHH
Q 019068 181 -----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (346)
Q Consensus 181 -----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~ 243 (346)
-+++||..+.+..++.+|+.+|..||+ |..|.+.+. ...+..+||||++|.+..+...|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeecc-CCCCCccceeeEEeccccchHHHhh
Confidence 168999999999999999999999999 999999999 6777889999999999999999999
Q ss_pred HhcCCcccCCCCCceeeecCCCCCCC------cc----------------------------------------------
Q 019068 244 KMTNPNFKLGTNAPTVSWADPRNVDS------SG---------------------------------------------- 271 (346)
Q Consensus 244 ~l~~~~~~~~~~~~~v~~~~~~~~~~------~~---------------------------------------------- 271 (346)
.||- +.++|..++|..+-..+... +.
T Consensus 271 sMNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMNL--FDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcch--hhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 9886 55777777776553222110 00
Q ss_pred --------------------------------------------------------------------------------
Q 019068 272 -------------------------------------------------------------------------------- 271 (346)
Q Consensus 272 -------------------------------------------------------------------------------- 271 (346)
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence
Q ss_pred --------------cccceEEEEcCC--CcccCH---HHHHHHhhccCcEEEEEeCCCCCCCCCC----CEEEEEeCCHH
Q 019068 272 --------------ASQVKAVYVKNL--PRNVTQ---DQLKKLFEHHGRITKVVVPPAKPGQEKN----RIGFVHFAERS 328 (346)
Q Consensus 272 --------------~~~~~~l~V~nL--p~~~t~---~~L~~~F~~~G~v~~v~i~~~~~~~~~~----g~afV~f~~~~ 328 (346)
...++.+.++|+ |.++++ .+|++.|.+||.|.+|.|...+.+..-- --.||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 000577888998 777764 5899999999999999998877654211 13699999999
Q ss_pred HHHHHHHHhcCcccCCCC
Q 019068 329 SAMKALKNTEKYELDGDH 346 (346)
Q Consensus 329 ~A~~Al~~lng~~i~gr~ 346 (346)
++.+|.+.|+|++|+||+
T Consensus 509 e~~rak~ALdGRfFgGr~ 526 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRK 526 (544)
T ss_pred HHHHHHHhhccceecCce
Confidence 999999999999999985
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3.5e-30 Score=230.64 Aligned_cols=168 Identities=23% Similarity=0.449 Sum_probs=155.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+++++++|+++|+.||.|.+|+|+.+..+++++|||||+|.+.++|.+|+..|++..+.++.|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCc------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCccc
Q 019068 178 SQA------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251 (346)
Q Consensus 178 ~~~------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 251 (346)
+.+ ..+|||+|||+.+++++|+++|+.||. |..++++++ +.++++++||||+|.+.++|.+|+..|++..+.
T Consensus 184 a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~-V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 184 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ-IVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ccccccccccceeEEeCCCCcccHHHHHHHHHhcCC-EEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 754 467999999999999999999999999 999999998 789999999999999999999999999987655
Q ss_pred CCCCCceeeecCCCCC
Q 019068 252 LGTNAPTVSWADPRNV 267 (346)
Q Consensus 252 ~~~~~~~v~~~~~~~~ 267 (346)
...+.+.|.++.....
T Consensus 262 g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 262 GGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCceeEEEEECCcccc
Confidence 5667888988876543
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-29 Score=227.45 Aligned_cols=235 Identities=27% Similarity=0.470 Sum_probs=207.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCcc-
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK- 181 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~- 181 (346)
.|||.||++.++...|..+|+.||.|.+|++.++.. | ++|| ||+|.+.+.|.+|+..+||..+.|+.|.|.....+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999964 4 9999 99999999999999999999999999999766532
Q ss_pred -------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCC
Q 019068 182 -------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (346)
Q Consensus 182 -------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 248 (346)
..+++.+++...++..|..+|..+|. |..+.++.+ ..+.+++|+||.|.+.+.|..|+..+++.
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhccCC
Confidence 46899999999999999999999999 999999998 67779999999999999999999999986
Q ss_pred cccCCCCCceeeecCCCCCCC--------------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCC
Q 019068 249 NFKLGTNAPTVSWADPRNVDS--------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314 (346)
Q Consensus 249 ~~~~~~~~~~v~~~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~ 314 (346)
.. .+..+.|..+....... ........|+|.||+..++.+.|+.+|+.||.|.+++|..+..+.
T Consensus 232 ~~--~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~ 309 (369)
T KOG0123|consen 232 IF--GDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGK 309 (369)
T ss_pred cC--CccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCC
Confidence 53 36666666665532111 223445899999999999999999999999999999999987655
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 315 ~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
. +|||||.|.+.++|.+|+..+||..+.|++
T Consensus 310 s-kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~ 340 (369)
T KOG0123|consen 310 S-KGFGFVEFSSPEEAKKAMTEMNGRLIGGKP 340 (369)
T ss_pred c-cceEEEEcCCHHHHHHHHHhhChhhhcCCc
Confidence 4 899999999999999999999999999874
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=230.52 Aligned_cols=234 Identities=25% Similarity=0.385 Sum_probs=195.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
.-.|.|+|||+.|...+|+.+|+.||.|..|.|.+.+.++.. |||||+|....+|.+|++.+|+..|.|++|-|.||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 557999999999999999999999999999999988776555 9999999999999999999999999999999999864
Q ss_pred c-------------------------------------------------------------------------------
Q 019068 181 K------------------------------------------------------------------------------- 181 (346)
Q Consensus 181 ~------------------------------------------------------------------------------- 181 (346)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 3
Q ss_pred -----------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHH
Q 019068 182 -----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK 244 (346)
Q Consensus 182 -----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 244 (346)
.+|||+|||+.+++++|.++|+.||+ |.++.++.+ +.++.++|.|||.|.+...++.|+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHh
Confidence 57999999999999999999999999 999999999 89999999999999999999999987
Q ss_pred hc----CCcccCCCCCceeeecCCCCCCC---------------------------------------------------
Q 019068 245 MT----NPNFKLGTNAPTVSWADPRNVDS--------------------------------------------------- 269 (346)
Q Consensus 245 l~----~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------------- 269 (346)
.. ...+.+.|+.+.|..+-++....
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 72 23366788888887775543221
Q ss_pred ------cccccceEEEEcCCCcccCHHHHHHHhhcc-----CcEE-EEEeCCCC---CCCCCCCEEEEEeCCHHHHHHHH
Q 019068 270 ------SGASQVKAVYVKNLPRNVTQDQLKKLFEHH-----GRIT-KVVVPPAK---PGQEKNRIGFVHFAERSSAMKAL 334 (346)
Q Consensus 270 ------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~-~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Al 334 (346)
......++|.|+|||..++...|..+.... +.+. .++.+... ..+.+.||+|+.|..++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 111224889999999999999999987642 2222 23333322 23445799999999999999999
Q ss_pred HHh
Q 019068 335 KNT 337 (346)
Q Consensus 335 ~~l 337 (346)
+.+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 854
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=5.3e-29 Score=223.06 Aligned_cols=158 Identities=22% Similarity=0.438 Sum_probs=144.8
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
..++|||++||+.+++++|+++|..+|. |..|+|+++ ..+++++|||||+|.+.++|.+|+..|++ ..+.++.++|
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~-V~~v~i~~d-~~tg~srGyaFVeF~~~e~A~~Ai~~LnG--~~l~gr~i~V 181 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGP-INTCRIMRD-YKTGYSFGYAFVDFGSEADSQRAIKNLNG--ITVRNKRLKV 181 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCccCcEEEEEEccHHHHHHHHHHcCC--CccCCceeee
Confidence 4578999999999999999999999999 999999999 78999999999999999999999999988 4578899999
Q ss_pred eecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
.|+.+.... ...++|||+|||..+++++|+++|++||.|..++|++++.++.++|||||+|.+.++|.+||..|||
T Consensus 182 ~~a~p~~~~----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred ecccccccc----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 998764322 2347899999999999999999999999999999999998999999999999999999999999999
Q ss_pred cccCCC
Q 019068 340 YELDGD 345 (346)
Q Consensus 340 ~~i~gr 345 (346)
..|.|+
T Consensus 258 ~~~~g~ 263 (346)
T TIGR01659 258 VIPEGG 263 (346)
T ss_pred CccCCC
Confidence 988763
No 21
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=6.1e-29 Score=222.74 Aligned_cols=236 Identities=23% Similarity=0.392 Sum_probs=202.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..+|||+--|+..+++.+|..||+.+|+|..|++|.+..+++++|.|||+|.+.+....|| .|.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 4678999999999999999999999999999999999999999999999999999999999 699999999999998654
Q ss_pred cc--------------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHH
Q 019068 180 AK--------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (346)
Q Consensus 180 ~~--------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 239 (346)
.. ..|||+||.+++++..|+.+|.++|. |..|.++++ ..+|.++|||||+|.+.++|.
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHHH
Confidence 21 33899999999999999999999999 999999999 679999999999999999999
Q ss_pred HHHHHhcCCcccCCCCCceeeecCCCCCCC--------------------------------------------------
Q 019068 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDS-------------------------------------------------- 269 (346)
Q Consensus 240 ~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~-------------------------------------------------- 269 (346)
+|+..|++ +.+-|+.++|..-..+....
T Consensus 335 ~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 335 KALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 99999998 67788877764321110000
Q ss_pred ------------------ccc-------ccceEEEEcCC--CcccC--------HHHHHHHhhccCcEEEEEeCCCCCCC
Q 019068 270 ------------------SGA-------SQVKAVYVKNL--PRNVT--------QDQLKKLFEHHGRITKVVVPPAKPGQ 314 (346)
Q Consensus 270 ------------------~~~-------~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~v~~v~i~~~~~~~ 314 (346)
... .++.++.++|+ |.+.| .+++.+.|.+||.|.+|.+....
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns--- 489 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS--- 489 (549)
T ss_pred cccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC---
Confidence 001 33567777777 44444 37899999999999999997775
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 315 ~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
-|++||.|.+.+.|..|+.+|||.||.||
T Consensus 490 --~g~VYvrc~s~~~A~~a~~alhgrWF~gr 518 (549)
T KOG0147|consen 490 --AGCVYVRCPSAEAAGTAVKALHGRWFAGR 518 (549)
T ss_pred --CceEEEecCcHHHHHHHHHHHhhhhhccc
Confidence 58999999999999999999999999998
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=5.7e-28 Score=227.30 Aligned_cols=162 Identities=21% Similarity=0.455 Sum_probs=144.6
Q ss_pred cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceee
Q 019068 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (346)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 260 (346)
.++|||+|||+.+++++|+.+|..||. |..++++++ +.+++++|||||+|.+.++|..|+..|++ ..+.|+.++|.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCC--eEEecceeeec
Confidence 368999999999999999999999999 999999999 78999999999999999999999999988 45789999988
Q ss_pred ecCCCCCCC-------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHH
Q 019068 261 WADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (346)
Q Consensus 261 ~~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 333 (346)
+........ ......++|||+|||..+++++|+++|+.||.|.+++|+++..++.++|||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 654332211 1122347999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHhcCcccCCCC
Q 019068 334 LKNTEKYELDGDH 346 (346)
Q Consensus 334 l~~lng~~i~gr~ 346 (346)
+..|||+.|+|+.
T Consensus 263 I~amNg~elgGr~ 275 (612)
T TIGR01645 263 IASMNLFDLGGQY 275 (612)
T ss_pred HHHhCCCeeCCeE
Confidence 9999999999974
No 23
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=9.4e-28 Score=220.77 Aligned_cols=238 Identities=22% Similarity=0.343 Sum_probs=199.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..+.|+|+|||..+..++|..+|..||.|..+.+.+. --.++|.|.++.+|.+|++.|....+....+.+.++.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 4567999999999999999999999999999955421 2249999999999999999988877766666554432
Q ss_pred cc--------------------------------------------------------ccceecCCCCCCCHHHHHHHHH
Q 019068 180 AK--------------------------------------------------------YRLFIGNIPRNWGSEDLQKVVS 203 (346)
Q Consensus 180 ~~--------------------------------------------------------~~l~v~~l~~~~~~~~l~~~f~ 203 (346)
.. ..||+.||++..+.+.+..+|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 00 2399999999999999999999
Q ss_pred hhCCCeeEEEEeeCCCC--CCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCC-----cccccce
Q 019068 204 EVGPGVTGVELVKDMKN--SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS-----SGASQVK 276 (346)
Q Consensus 204 ~~g~~i~~~~~~~~~~~--~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~ 276 (346)
..|. |..++|...... .-.|.|||||+|.+.++|+.|++.|++.. +.|+.+.+.++...+... +.....+
T Consensus 538 k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv--ldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 538 KQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV--LDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred hcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce--ecCceEEEEeccCccccccccccccccccc
Confidence 9999 888887655222 34577999999999999999999999854 789999998887222111 2222357
Q ss_pred EEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.|.|+|||+..+-.+|+.+|..||.|.+|+||.....+.++|||||+|-++++|.+|+.+|.+++|-||+
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 9999999999999999999999999999999999777778999999999999999999999999999986
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=5.2e-27 Score=214.88 Aligned_cols=158 Identities=23% Similarity=0.459 Sum_probs=145.2
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
++.+|||+|||+.+++.+|+.+|+.+|+ |..|+++++ +.+|.++|||||+|.+.++|.+|+..|++ ..+.|+.+.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNG--LRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhccc--EEECCeeEEE
Confidence 4578999999999999999999999999 999999999 77899999999999999999999999998 4578999999
Q ss_pred eecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
.|+.+.... ...++|||+|||..+++++|+.+|+.||.|..++++.+..++.++|||||+|.+.++|..|+..|||
T Consensus 78 ~~a~~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 78 SYARPSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred Eeecccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 998765432 2347899999999999999999999999999999999988888899999999999999999999999
Q ss_pred cccCCC
Q 019068 340 YELDGD 345 (346)
Q Consensus 340 ~~i~gr 345 (346)
..+.|+
T Consensus 154 ~~~~g~ 159 (352)
T TIGR01661 154 TTPSGC 159 (352)
T ss_pred CccCCC
Confidence 999874
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=1.7e-25 Score=211.88 Aligned_cols=162 Identities=24% Similarity=0.378 Sum_probs=142.1
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
..++|||+|||..+++.+|+.+|+.+|. |..|+++++ ..++.++|||||+|.+.++|.+|+. +++ ..+.|+.+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g--~~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTG--QMLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCC--CEECCeeeEE
Confidence 4578999999999999999999999998 999999998 7889999999999999999999996 555 3467888888
Q ss_pred eecCCCCCC--------CcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHH
Q 019068 260 SWADPRNVD--------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (346)
Q Consensus 260 ~~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 331 (346)
.+....... ....+..++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 765432211 111233689999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHhcCcccCCCC
Q 019068 332 KALKNTEKYELDGDH 346 (346)
Q Consensus 332 ~Al~~lng~~i~gr~ 346 (346)
+|+..|||..|.|++
T Consensus 243 ~A~~~l~g~~i~g~~ 257 (457)
T TIGR01622 243 EALEVMNGFELAGRP 257 (457)
T ss_pred HHHHhcCCcEECCEE
Confidence 999999999999974
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.2e-25 Score=184.55 Aligned_cols=157 Identities=25% Similarity=0.527 Sum_probs=147.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
..-|||+-|...++-+.|++.|.+||.|..+++++|..|++++|||||.|.++++|..||..|||.=|.+|.|+-.++..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred c----------------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHH
Q 019068 181 K----------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238 (346)
Q Consensus 181 ~----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 238 (346)
+ .++|++|++..++++.++..|++||+ |..||+.++ +||+||.|.+.+.|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 3 67999999999999999999999999 999999999 99999999999999
Q ss_pred HHHHHHhcCCcccCCCCCceeeecCCCCC
Q 019068 239 EYSRQKMTNPNFKLGTNAPTVSWADPRNV 267 (346)
Q Consensus 239 ~~a~~~l~~~~~~~~~~~~~v~~~~~~~~ 267 (346)
..|+-.+++.. +.|..+++.|......
T Consensus 214 ahAIv~mNnte--i~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 214 AHAIVQMNNTE--IGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHhcCce--eCceEEEEeccccCCC
Confidence 99999999964 8899999999876543
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.5e-25 Score=181.55 Aligned_cols=159 Identities=25% Similarity=0.471 Sum_probs=147.4
Q ss_pred CccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCce
Q 019068 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (346)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 258 (346)
..+..|.|.-||.++++++++.+|...|. |+.|+++|+ +.+|.+-|||||.|.++.+|.+|+..|++ +.+..+++.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEE
Confidence 34568999999999999999999999999 999999999 99999999999999999999999999998 678999999
Q ss_pred eeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc
Q 019068 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (346)
Q Consensus 259 v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln 338 (346)
|+|+.|.+.. .....|||++||+++|..+|.++|++||.|.--+|+.+.-++.+||.|||.|+...+|..|+..||
T Consensus 115 VSyARPSs~~----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 115 VSYARPSSDS----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred EEeccCChhh----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 9999877543 334789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCC
Q 019068 339 KYELDGD 345 (346)
Q Consensus 339 g~~i~gr 345 (346)
|.+=.|.
T Consensus 191 G~~P~g~ 197 (360)
T KOG0145|consen 191 GQKPSGC 197 (360)
T ss_pred CCCCCCC
Confidence 9876553
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=7.4e-25 Score=169.87 Aligned_cols=167 Identities=26% Similarity=0.435 Sum_probs=153.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
....||||+||+..++++-|.++|-+.|+|..+++.+++.+...+||||++|.+.++|.-|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Cc-------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCccc
Q 019068 179 QA-------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251 (346)
Q Consensus 179 ~~-------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 251 (346)
.. ..+|||+||.+.+++..|+..|+.+|..+..-.++++ ..+|.++|||||.|.+.+.+.+|+..+++. .
T Consensus 87 s~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~ngq--~ 163 (203)
T KOG0131|consen 87 SAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSMNGQ--Y 163 (203)
T ss_pred ccccccccccccccccccCcchhHHHHHHHHHhccccccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHhccc--h
Confidence 72 2579999999999999999999999996666788888 788999999999999999999999999984 5
Q ss_pred CCCCCceeeecCCCCCC
Q 019068 252 LGTNAPTVSWADPRNVD 268 (346)
Q Consensus 252 ~~~~~~~v~~~~~~~~~ 268 (346)
++.+++++.++......
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 78899999988766544
No 29
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.92 E-value=1.5e-23 Score=182.63 Aligned_cols=143 Identities=30% Similarity=0.516 Sum_probs=129.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHc-cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.+.+||.|||+++.+.+|+.+|.. .|.|.+|.+..+. .|+++|||.|+|++++.+++|++.||.+.|.|++|.|....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456999999999999999999965 7999999999985 69999999999999999999999999999999999997543
Q ss_pred cc------------------------------------------------------------------------------
Q 019068 180 AK------------------------------------------------------------------------------ 181 (346)
Q Consensus 180 ~~------------------------------------------------------------------------------ 181 (346)
..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 21
Q ss_pred -------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcC
Q 019068 182 -------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (346)
Q Consensus 182 -------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 247 (346)
.++||.||...+....|++.|.-.|. ++.+.+.-+ ..|.++||+.++|.++-.|..|+..+..
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 46899999999999999999999999 999888777 5668999999999999999999998874
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=6.3e-24 Score=199.86 Aligned_cols=193 Identities=21% Similarity=0.331 Sum_probs=162.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCC-eEEEEEe-eCCCCCCCcceEEEEecCHHHHHHHHHHhcC--ccccCceeEE
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIM-KGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIRC 175 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v 175 (346)
..++|||+|||+.+++++|.++|++++. +..+.+. ....+++++|||||+|.+.++|..|++.|+. ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999864 4444333 3334567899999999999999999988763 4578999999
Q ss_pred eecCcc-----------ccceecCCCCCCCHHHHHHHHHhh--CCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHH
Q 019068 176 STSQAK-----------YRLFIGNIPRNWGSEDLQKVVSEV--GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242 (346)
Q Consensus 176 ~~~~~~-----------~~l~v~~l~~~~~~~~l~~~f~~~--g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 242 (346)
.++.+. ++|||+||+..+++++|+++|+.| |. |..|.++ ++||||+|.+.++|.+|+
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~-I~rV~~~---------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK-VERVKKI---------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc-eEEEEee---------cCeEEEEeCCHHHHHHHH
Confidence 988653 569999999999999999999999 98 8888765 359999999999999999
Q ss_pred HHhcCCcccCCCCCceeeecCCCCCCC------------------------cccccceEEEEcCCCcccCHHHHHHHhhc
Q 019068 243 QKMTNPNFKLGTNAPTVSWADPRNVDS------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEH 298 (346)
Q Consensus 243 ~~l~~~~~~~~~~~~~v~~~~~~~~~~------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 298 (346)
..|++. .+.++.+.|.|+.+..... ...+.+.++++.|+|+.++..-+..+|..
T Consensus 287 ~~lnG~--~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~ 364 (578)
T TIGR01648 287 DELNGK--ELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRM 364 (578)
T ss_pred HHhCCC--EECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhcccc
Confidence 999985 5789999999998764430 11224689999999999999999999999
Q ss_pred cCcEEE
Q 019068 299 HGRITK 304 (346)
Q Consensus 299 ~G~v~~ 304 (346)
+|.|..
T Consensus 365 ~g~~~~ 370 (578)
T TIGR01648 365 PGPIRG 370 (578)
T ss_pred CccccC
Confidence 998653
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.3e-24 Score=189.22 Aligned_cols=157 Identities=24% Similarity=0.449 Sum_probs=139.1
Q ss_pred ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCccc-CCCCCceee
Q 019068 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVS 260 (346)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~-~~~~~~~v~ 260 (346)
-++||+.||+.+++.+|+.+|.+||. |..|.+++| +.++.++|+|||.|.+.++|.+|+..|++.... -...++.|.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 47999999999999999999999999 999999999 999999999999999999999999999986432 334577888
Q ss_pred ecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCc
Q 019068 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (346)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~ 340 (346)
+++....+- ...+.|||+-|++.+|+.+|+++|++||.|.+++|+++..+.. ||||||+|.+.+.|..|++.|||.
T Consensus 113 ~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~s-RGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 113 YADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLS-RGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccc-cceeEEEEehHHHHHHHHHhhccc
Confidence 888766543 2347899999999999999999999999999999999986655 999999999999999999999994
Q ss_pred -ccCC
Q 019068 341 -ELDG 344 (346)
Q Consensus 341 -~i~g 344 (346)
++.|
T Consensus 189 ~tmeG 193 (510)
T KOG0144|consen 189 QTMEG 193 (510)
T ss_pred eeecc
Confidence 3443
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=1.6e-23 Score=201.06 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=127.9
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhh-----------CCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCC
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEV-----------GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~-----------g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 248 (346)
..++|||+|||+.+++++|..+|..+ +..|..+.+.+ .+|||||+|.+.++|..|+. |++
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-------~kg~afVeF~~~e~A~~Al~-l~g- 244 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-------EKNFAFLEFRTVEEATFAMA-LDS- 244 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-------CCCEEEEEeCCHHHHhhhhc-CCC-
Confidence 34789999999999999999999986 22244444433 48999999999999999994 776
Q ss_pred cccCCCCCceeeecCCCCCC-------------------------CcccccceEEEEcCCCcccCHHHHHHHhhccCcEE
Q 019068 249 NFKLGTNAPTVSWADPRNVD-------------------------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303 (346)
Q Consensus 249 ~~~~~~~~~~v~~~~~~~~~-------------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 303 (346)
+.+.|..+.+.+....... .......++|||+|||..+++++|+++|+.||.|.
T Consensus 245 -~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 245 -IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred -eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 3466777777543221100 01122357999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 304 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+.|+.+..++.++|||||+|.+.++|..|+..|||..|+|++
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 9999999988989999999999999999999999999999873
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=6.3e-24 Score=164.71 Aligned_cols=160 Identities=19% Similarity=0.312 Sum_probs=145.3
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
...+|||+||+..++++-|+++|-+.|+ |.++.++++ +.+...+||||++|.+.++|.-|++.|+ .+++.|+++++
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagp-Vv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikiln--~VkLYgrpIrv 83 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGP-VVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKILN--MVKLYGRPIRV 83 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCc-eeeeecchh-hhcccccceeEEEEechhhhHHHHHHHH--HHHhcCceeEE
Confidence 4578999999999999999999999999 999999999 8899999999999999999999999999 47899999999
Q ss_pred eecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEE-EEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc
Q 019068 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (346)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln 338 (346)
..+.....+ ...+..|||+||.+.+++..|.+.|+.||.+.. -.|+++..|+.++|||||.|.+-+.+.+|+..+|
T Consensus 84 ~kas~~~~n---l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 84 NKASAHQKN---LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred Eeccccccc---ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 998833332 223378999999999999999999999999765 4899999999999999999999999999999999
Q ss_pred CcccCCCC
Q 019068 339 KYELDGDH 346 (346)
Q Consensus 339 g~~i~gr~ 346 (346)
|..+.+|+
T Consensus 161 gq~l~nr~ 168 (203)
T KOG0131|consen 161 GQYLCNRP 168 (203)
T ss_pred cchhcCCc
Confidence 99998875
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=5.4e-22 Score=173.76 Aligned_cols=172 Identities=19% Similarity=0.353 Sum_probs=141.4
Q ss_pred ecCHHHHHHHHHHhcCccccCceeEEeecCc----------------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEE
Q 019068 150 FRNVELASKAIDKLNNTEFKGKKIRCSTSQA----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213 (346)
Q Consensus 150 f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~ 213 (346)
..+.+.|.++|..-. |.+|.|...+. .+.|||+.||..+.+++|.-+|...|. |-.+|
T Consensus 41 ~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elR 114 (506)
T KOG0117|consen 41 VQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELR 114 (506)
T ss_pred cccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeEE
Confidence 344677778775333 33444443321 257999999999999999999999999 99999
Q ss_pred EeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHH
Q 019068 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLK 293 (346)
Q Consensus 214 ~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 293 (346)
++++ +.+|.+||||||+|.+.+.|+.|+..|++..+. .|+.+.|..+... ++|||+|||++++.++|.
T Consensus 115 LMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Svan----------~RLFiG~IPK~k~keeIl 182 (506)
T KOG0117|consen 115 LMMD-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSVAN----------CRLFIGNIPKTKKKEEIL 182 (506)
T ss_pred Eeec-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEeeec----------ceeEeccCCccccHHHHH
Confidence 9999 899999999999999999999999999998765 6677776655433 799999999999999999
Q ss_pred HHhhccCc-EEEEEeCCCC-CCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 294 KLFEHHGR-ITKVVVPPAK-PGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 294 ~~F~~~G~-v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
+.|++.+. |+.|.+.... +..++||||||+|.++..|..|-++|-.
T Consensus 183 ee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 183 EEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred HHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 99999876 6676665544 3455799999999999999999998654
No 35
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=1.7e-22 Score=186.31 Aligned_cols=214 Identities=27% Similarity=0.399 Sum_probs=170.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
+..+|||+|||+.+++++|+.+| |||.|..+..|.+|...++|..+.|+.|.|.+..
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcc
Confidence 56689999999999999999998 8999999999999999999999999999987654
Q ss_pred cc------------------------------------------------------------------------------
Q 019068 180 AK------------------------------------------------------------------------------ 181 (346)
Q Consensus 180 ~~------------------------------------------------------------------------------ 181 (346)
..
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 22
Q ss_pred -----------------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHH
Q 019068 182 -----------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238 (346)
Q Consensus 182 -----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 238 (346)
..++++|||..+..++|..+|..||+ |..+.+++. ...++|.|.++.+|
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp~~-------G~~aiv~fl~p~eA 434 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLPPG-------GTGAIVEFLNPLEA 434 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecCcc-------cceeeeeecCccch
Confidence 34789999999999999999999999 888844422 33489999999999
Q ss_pred HHHHHHhcCCcccCCCCCceeeecCC-------CC--------CC----C---------------------------ccc
Q 019068 239 EYSRQKMTNPNFKLGTNAPTVSWADP-------RN--------VD----S---------------------------SGA 272 (346)
Q Consensus 239 ~~a~~~l~~~~~~~~~~~~~v~~~~~-------~~--------~~----~---------------------------~~~ 272 (346)
.+|+..|....+. ..++++.|+.. .. .. . ...
T Consensus 435 r~Afrklaysr~k--~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~ 512 (725)
T KOG0110|consen 435 RKAFRKLAYSRFK--SAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDE 512 (725)
T ss_pred HHHHHHhchhhhc--cCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhcc
Confidence 9999988764322 22222222210 00 00 0 001
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCC---CCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+||+++++.+.|...|..+|.|.++.|...+... .+.|||||+|.+.++|+.||+.|+|+.|+|+.
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~ 589 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHK 589 (725)
T ss_pred ccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCce
Confidence 112449999999999999999999999999999888766442 34599999999999999999999999999974
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.9e-22 Score=163.57 Aligned_cols=249 Identities=18% Similarity=0.263 Sum_probs=159.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc---cCce
Q 019068 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKK 172 (346)
Q Consensus 96 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~ 172 (346)
.+....+.|||+.|...-.+++++.+|..||.|..|.+.+... |.++|||||+|.+..+|..||..|||..- ....
T Consensus 14 srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 14 SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 3444677899999999999999999999999999999999874 89999999999999999999999998654 3467
Q ss_pred eEEeecCccc---------------------------------------cceec----CCCCCCCH--HHH--HHHHHhh
Q 019068 173 IRCSTSQAKY---------------------------------------RLFIG----NIPRNWGS--EDL--QKVVSEV 205 (346)
Q Consensus 173 l~v~~~~~~~---------------------------------------~l~v~----~l~~~~~~--~~l--~~~f~~~ 205 (346)
|.|.++...+ .+.-. .|.+.++. -.+ ...++.-
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 8999887541 00001 11111111 011 1112211
Q ss_pred CC---CeeEEEEeeCCCC------CCCC-----ccE-EEEEeCChhHHHHHHHHhcCCcccCCCCCce------------
Q 019068 206 GP---GVTGVELVKDMKN------SSNN-----RGF-AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT------------ 258 (346)
Q Consensus 206 g~---~i~~~~~~~~~~~------~~~~-----~g~-~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~------------ 258 (346)
|- +|....-...+.. .+.+ .|| +...+.+...+..++-...-.+.......+.
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence 11 0111110000011 1111 111 1223333333333332222111111111000
Q ss_pred -----------eeecCCCCCC-----CcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEE
Q 019068 259 -----------VSWADPRNVD-----SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322 (346)
Q Consensus 259 -----------v~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV 322 (346)
+..+-+...+ ....+..+.|||..||....+.+|.++|-+||.|++.++..|+.++.+|.||||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 0000000000 022344699999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhcCcccCCC
Q 019068 323 HFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 323 ~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.|+++.+|+.||+.|||+.|+=+
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhh
Confidence 99999999999999999998743
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=3.9e-22 Score=165.55 Aligned_cols=138 Identities=27% Similarity=0.519 Sum_probs=126.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCccc
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 182 (346)
.|||+|||..+++.+|+.+|.+||+|..|.|+++ ||||..++...|..|+..|||..++|..|.|..+.+++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 5999999999999999999999999999999865 89999999999999999999999999999997765321
Q ss_pred cceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeec
Q 019068 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262 (346)
Q Consensus 183 ~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~ 262 (346)
+
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 263 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
.+++|+|+||...++..+|+..|.+||+|..+.|+++ |+||.|+-.++|..|++.|||+.|
T Consensus 77 -----------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 77 -----------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred -----------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc
Confidence 0168999999999999999999999999999999655 899999999999999999999999
Q ss_pred CCCC
Q 019068 343 DGDH 346 (346)
Q Consensus 343 ~gr~ 346 (346)
.|++
T Consensus 138 ~gk~ 141 (346)
T KOG0109|consen 138 QGKR 141 (346)
T ss_pred ccce
Confidence 9975
No 38
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.86 E-value=3e-20 Score=150.17 Aligned_cols=196 Identities=19% Similarity=0.342 Sum_probs=143.1
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 101 GSEVYIGGIPHDASEHDLRD----FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~----~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
..||||.||+..+..++|+. +|++||.|..|...+. .+.+|.|||.|.+.+.|..|+..|+|..+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999999888 9999999999988764 6789999999999999999999999999999999999
Q ss_pred ecCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCC
Q 019068 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (346)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 256 (346)
||..+..++..--+..+ .-+......++.+. . .....+|..
T Consensus 86 yA~s~sdii~~~~~~~v----------~~~~k~~~~~~~~~-~----------------------------~~~~~ng~~ 126 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFV----------EKEKKINGEILARI-K----------------------------QPLDTNGHF 126 (221)
T ss_pred cccCccchhhccCceec----------cccCcccccccccc-C----------------------------Ccccccccc
Confidence 99987776544211000 00000000111100 0 000001100
Q ss_pred ceeeecC-CCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHH
Q 019068 257 PTVSWAD-PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (346)
Q Consensus 257 ~~v~~~~-~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 335 (346)
-.+.... +........++..+||+.|||..++.+.|..+|..|.....|+++... ++.|||+|.+...|..|.+
T Consensus 127 ~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~ 201 (221)
T KOG4206|consen 127 YNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQ 201 (221)
T ss_pred cccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhh
Confidence 0000000 000012334556899999999999999999999999999999999986 6899999999999999999
Q ss_pred HhcCcccC
Q 019068 336 NTEKYELD 343 (346)
Q Consensus 336 ~lng~~i~ 343 (346)
.|+|..|-
T Consensus 202 ~lq~~~it 209 (221)
T KOG4206|consen 202 ALQGFKIT 209 (221)
T ss_pred hhccceec
Confidence 99998874
No 39
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.7e-19 Score=163.16 Aligned_cols=236 Identities=21% Similarity=0.458 Sum_probs=185.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc-----------C-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----------G-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~-----------G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 167 (346)
+.+.++|+++|+.++++.+..+|..- | .+..+.+- ..+.+||++|.+...|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhh-cccchh
Confidence 35569999999999999999999864 2 25555553 35789999999999999999 599999
Q ss_pred ccCceeEEeecC-----------------------------ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCC
Q 019068 168 FKGKKIRCSTSQ-----------------------------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218 (346)
Q Consensus 168 ~~g~~l~v~~~~-----------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~ 218 (346)
+.|+.+++.... ....+||++||..+++..+.++...+|+ +...+++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d- 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKD- 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeecc-
Confidence 999888775422 1257999999999999999999999999 999999999
Q ss_pred CCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCC--------------------cccccceEE
Q 019068 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS--------------------SGASQVKAV 278 (346)
Q Consensus 219 ~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~--------------------~~~~~~~~l 278 (346)
..+|.++||+|.+|.+...+..|++.|++ +.+++..+.+..+....... ....++..|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnG--m~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNG--MQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccch--hhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 67799999999999999999999999998 55777777776664433221 122223445
Q ss_pred EEcCC--Cccc-C-------HHHHHHHhhccCcEEEEEeCCC-CCCC--CCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 279 YVKNL--PRNV-T-------QDQLKKLFEHHGRITKVVVPPA-KPGQ--EKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 279 ~V~nL--p~~~-t-------~~~L~~~F~~~G~v~~v~i~~~-~~~~--~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.+.|+ |..+ . -++++.-|.+||.|..|.|++. .... .+-|-+||+|.+.+++++|+..|+|++|+||
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 55554 1111 1 2567778899999999999998 3222 2246689999999999999999999999998
Q ss_pred C
Q 019068 346 H 346 (346)
Q Consensus 346 ~ 346 (346)
.
T Consensus 483 t 483 (500)
T KOG0120|consen 483 T 483 (500)
T ss_pred E
Confidence 4
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1e-19 Score=155.64 Aligned_cols=160 Identities=21% Similarity=0.461 Sum_probs=144.6
Q ss_pred ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeee
Q 019068 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (346)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 261 (346)
+++||+.|.+.+.++.|+..|.+||+ |.++.+.-+ ..+++.+||+||+|.-++.|+.|+..||+ ..++|+.+.|.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg--~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhcc--ccccCccccccC
Confidence 57899999999999999999999999 999999988 88999999999999999999999999998 568999999986
Q ss_pred cCCCCCCCcc-------cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHH
Q 019068 262 ADPRNVDSSG-------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (346)
Q Consensus 262 ~~~~~~~~~~-------~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 334 (346)
.......... ...-++|||..+..++++++|+..|.-||.|.++.+.++..++.++|||||+|.+..+-..|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 6554443311 122379999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcccCCC
Q 019068 335 KNTEKYELDGD 345 (346)
Q Consensus 335 ~~lng~~i~gr 345 (346)
..||=+-++|.
T Consensus 270 asMNlFDLGGQ 280 (544)
T KOG0124|consen 270 ASMNLFDLGGQ 280 (544)
T ss_pred hhcchhhcccc
Confidence 99999998884
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.80 E-value=2.2e-18 Score=153.27 Aligned_cols=232 Identities=20% Similarity=0.322 Sum_probs=170.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
.....-|.+++|||++|+++|..||+.++ |..+.+.+ .+|+..|-|||+|.+.+++.+|++ .+...+..+.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 34566799999999999999999999997 67765555 469999999999999999999996 788888888888866
Q ss_pred cCc-----------------cccceecCCCCCCCHHHHHHHHHhhCCCeeE-EEEeeCCCCCCCCccEEEEEeCChhHHH
Q 019068 178 SQA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG-VELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (346)
Q Consensus 178 ~~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~-~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 239 (346)
+.. ...|-+++||+.+++++|.++|+.+-- +.. +.++.+ ..+++.|=|||+|.+.+.|+
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I-v~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI-VPDGILLPMD--QRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc-cccceeeecc--CCCCcccceEEEecCHHHHH
Confidence 532 245778999999999999999998765 333 444544 56779999999999999999
Q ss_pred HHHHHhcCCcccCCCCCcee-----------------------------------eecCCCC------------------
Q 019068 240 YSRQKMTNPNFKLGTNAPTV-----------------------------------SWADPRN------------------ 266 (346)
Q Consensus 240 ~a~~~l~~~~~~~~~~~~~v-----------------------------------~~~~~~~------------------ 266 (346)
.|+..... .++.+-+-| .+...+.
T Consensus 160 ~Al~rhre---~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~ 236 (510)
T KOG4211|consen 160 IALGRHRE---NIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGF 236 (510)
T ss_pred HHHHHHHH---hhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccc
Confidence 99875332 011110000 0000000
Q ss_pred -----------------------CC---C----------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCC
Q 019068 267 -----------------------VD---S----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA 310 (346)
Q Consensus 267 -----------------------~~---~----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~ 310 (346)
.. + ........+..++||+..+..+|..+|+..-.+ .|.|-..
T Consensus 237 ~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig 315 (510)
T KOG4211|consen 237 SRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG 315 (510)
T ss_pred ccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC
Confidence 00 0 001113778899999999999999999987665 5666555
Q ss_pred CCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 311 ~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
..+.. .|-|+|+|.|.++|..|+. -++..+
T Consensus 316 ~dGr~-TGEAdveF~t~edav~Ams-kd~anm 345 (510)
T KOG4211|consen 316 PDGRA-TGEADVEFATGEDAVGAMG-KDGANM 345 (510)
T ss_pred CCCcc-CCcceeecccchhhHhhhc-cCCccc
Confidence 54444 7899999999999999997 344333
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.80 E-value=9.9e-19 Score=151.71 Aligned_cols=230 Identities=22% Similarity=0.305 Sum_probs=180.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcC--ccccCceeEEe
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIRCS 176 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~ 176 (346)
..++.|.++|||+++++.+|..++.+||.|..+.+... +..||++|.+...|..-+..... -.+.|+.|-|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 36889999999999999999999999999999988764 33899999999999884432221 22455666555
Q ss_pred ecCcc----------------------------------------------ccceecCCCCCCCHHHHHHHHHhhCCCee
Q 019068 177 TSQAK----------------------------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210 (346)
Q Consensus 177 ~~~~~----------------------------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~ 210 (346)
++... -.++|.++-+.++-+-|..+|+.||. |.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eE
Confidence 43210 24677888899999999999999999 55
Q ss_pred EE-EEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCC-----------------Cc--
Q 019068 211 GV-ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD-----------------SS-- 270 (346)
Q Consensus 211 ~~-~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~-----------------~~-- 270 (346)
.+ .+-+. ..--|.|+|.+...|+.|...|.+.++..+.++++++++.-...+ ..
T Consensus 179 KIiTF~Kn------n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 179 KIITFTKN------NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEecc------cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 44 34333 234488999999999999999999999888888887665321100 00
Q ss_pred --------------------------------------ccc--cceEEEEcCC-CcccCHHHHHHHhhccCcEEEEEeCC
Q 019068 271 --------------------------------------GAS--QVKAVYVKNL-PRNVTQDQLKKLFEHHGRITKVVVPP 309 (346)
Q Consensus 271 --------------------------------------~~~--~~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~ 309 (346)
... .+..|.|.|| +..+|.+-|..+|.-||.|.+|+|..
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 000 1478899999 57899999999999999999999999
Q ss_pred CCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 310 ~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+ +--|.|+|.+...|+.|+.+|+|..|-||+
T Consensus 333 nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~ 364 (492)
T KOG1190|consen 333 NK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKK 364 (492)
T ss_pred cC-----CcceeeeecchhHHHHHHHHhhcceecCce
Confidence 87 446999999999999999999999999874
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=2.1e-19 Score=156.52 Aligned_cols=232 Identities=22% Similarity=0.382 Sum_probs=181.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
+.++|||++|+|.++++.|+.+|.+||.|..|.+++++.+++++||+||+|.+.....+++. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999999995 66788999999998887
Q ss_pred cc------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcC
Q 019068 180 AK------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (346)
Q Consensus 180 ~~------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 247 (346)
++ ..+||++||..+++.+++.+|.++|. |..+-++.+ ..+.++++|+||.|.+.+...+++..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~-v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~--- 158 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGK-VADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ--- 158 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccce-eEeeEEeec-ccccccccceeeEeccccccceeccc---
Confidence 64 37999999999999999999999997 999999999 89999999999999999999877643
Q ss_pred CcccCCCCCceeeecCCCCCCCccccc-ceEEEEcCCCcccCHHHHHHHhhccCcEEEE----EeC--CCCCCCCCCCEE
Q 019068 248 PNFKLGTNAPTVSWADPRNVDSSGASQ-VKAVYVKNLPRNVTQDQLKKLFEHHGRITKV----VVP--PAKPGQEKNRIG 320 (346)
Q Consensus 248 ~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v----~i~--~~~~~~~~~g~a 320 (346)
+...++++.+.|..+.++......... .......|++...+--.|..+|..||.+... +.. +.... .+.|.+
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~g 237 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPL-FNGGSG 237 (311)
T ss_pred ceeeecCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccccccccccccccccccc-cCCCcc
Confidence 344688999999999888766644321 1222233555555555666777777665311 000 11111 135788
Q ss_pred EEEeCCHHHHHHHHHHhc
Q 019068 321 FVHFAERSSAMKALKNTE 338 (346)
Q Consensus 321 fV~f~~~~~A~~Al~~ln 338 (346)
|..|.+.....-+-..++
T Consensus 238 ~~~~~~~~~~~~~~~~~~ 255 (311)
T KOG4205|consen 238 YPEFGNSGLGFGYGNKLN 255 (311)
T ss_pred ccccCccccccccccccC
Confidence 888876655554444333
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=6.2e-18 Score=131.68 Aligned_cols=145 Identities=23% Similarity=0.480 Sum_probs=128.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..+++|||+|||.++.+.+|..+|.+||.|..|.+...+ ....||||+|.++.+|..||..-+|..+.|.+|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 357899999999999999999999999999999986543 35789999999999999999999999999999999987
Q ss_pred Cc--------------------------------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCcc
Q 019068 179 QA--------------------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG 226 (346)
Q Consensus 179 ~~--------------------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g 226 (346)
.. ...+.|.+||+..++++|+.+....|. |....+.++ |
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd-vCfadv~rD--------g 151 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD-VCFADVQRD--------G 151 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC-eeeeeeecc--------c
Confidence 52 146899999999999999999999999 999999888 5
Q ss_pred EEEEEeCChhHHHHHHHHhcCCcccCCCC
Q 019068 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255 (346)
Q Consensus 227 ~~~v~f~~~~~a~~a~~~l~~~~~~~~~~ 255 (346)
++.|.|.+.++++-|+..|....+...|.
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~seGe 180 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFRSEGE 180 (241)
T ss_pred ceeeeeeehhhHHHHHHhhccccccCcCc
Confidence 89999999999999999988765444343
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=2.1e-17 Score=140.87 Aligned_cols=194 Identities=24% Similarity=0.401 Sum_probs=137.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeE--------EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 169 (346)
+.-++.|||.|||.++|.+++..+|++||.|. .|++.++.. |..+|-|.+.|--.+++..|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34566799999999999999999999999874 478888865 999999999999999999999999999999
Q ss_pred CceeEEeecCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCc
Q 019068 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (346)
Q Consensus 170 g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~ 249 (346)
|+.|+|..|+ |..-|. - ..+++.++-+ ... +.+..++.
T Consensus 210 g~~~rVerAk----------------------fq~Kge-~---------~~~~k~k~k~----~~~----kk~~k~q~-- 247 (382)
T KOG1548|consen 210 GKKLRVERAK----------------------FQMKGE-Y---------DASKKEKGKC----KDK----KKLKKQQQ-- 247 (382)
T ss_pred CcEEEEehhh----------------------hhhccC-c---------Cccccccccc----ccH----HHHHHHHH--
Confidence 9999998886 111121 0 0001101000 011 11111111
Q ss_pred ccCCCCCceeeecCCCCCCCcccccceEEEEcCC--Cccc--C-------HHHHHHHhhccCcEEEEEeCCCCCCCCCCC
Q 019068 250 FKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNL--PRNV--T-------QDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318 (346)
Q Consensus 250 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nL--p~~~--t-------~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g 318 (346)
++.+.... . ...+.....+||.++|| |..+ + .++|++-|.+||.|.+|.+.-.. +.|
T Consensus 248 -k~~dw~pd------~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdG 315 (382)
T KOG1548|consen 248 -KLLDWRPD------R-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDG 315 (382)
T ss_pred -hhcccCCC------c-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCc
Confidence 11111111 1 11223334489999999 3222 2 36778889999999999887544 358
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 319 IGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 319 ~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+-|.|.+.+.|..|++.|+|++|+||+
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 8999999999999999999999999985
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=5.7e-19 Score=159.07 Aligned_cols=160 Identities=25% Similarity=0.436 Sum_probs=136.1
Q ss_pred ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeee
Q 019068 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (346)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 261 (346)
+++|+..|+...++.+|..+|+.+|. |..|+++.+ +.++.++|.+||+|.+......|+. |.+ ..+.|.++.|..
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~aia-LsG--qrllg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAIA-LSG--QRLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHhh-hcC--CcccCceeEecc
Confidence 67888889988999999999999999 999999999 8899999999999999999999884 555 346677777755
Q ss_pred cCCCCCCC----------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHH
Q 019068 262 ADPRNVDS----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (346)
Q Consensus 262 ~~~~~~~~----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 331 (346)
........ ....+-..|+|+||...+++++|+.+|.+||.|..|.++++..+|.++|||||+|.+.++|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 43221110 11111233999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccCCCC
Q 019068 332 KALKNTEKYELDGDH 346 (346)
Q Consensus 332 ~Al~~lng~~i~gr~ 346 (346)
+|+..|||+.|.||.
T Consensus 335 ~a~e~lngfelAGr~ 349 (549)
T KOG0147|consen 335 KALEQLNGFELAGRL 349 (549)
T ss_pred HHHHHhccceecCce
Confidence 999999999999984
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.76 E-value=2.4e-18 Score=149.84 Aligned_cols=159 Identities=24% Similarity=0.414 Sum_probs=136.8
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
...+|||++|+|.++++.|+.+|.++|. |..|.++++ +.+++++||+||+|.+......++.. ....+.++.+-.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Ge-v~d~~vm~d-~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGE-VTDCVVMRD-PSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCc-eeeEEEecc-CCCCCcccccceecCCCcchheeecc---cccccCCccccc
Confidence 3468999999999999999999999999 999999999 77899999999999998888776654 334688888888
Q ss_pred eecCCCCCCCcccc--cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh
Q 019068 260 SWADPRNVDSSGAS--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (346)
Q Consensus 260 ~~~~~~~~~~~~~~--~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 337 (346)
..+.++........ .+..+||++||..+++.+++++|.+||.|..+.++.+..+..++||+||.|.+.+.+.+++. .
T Consensus 80 k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 80 KRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred eeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 88877765543332 36899999999999999999999999999999999999999999999999999999999887 3
Q ss_pred cCcccCC
Q 019068 338 EKYELDG 344 (346)
Q Consensus 338 ng~~i~g 344 (346)
.-+.|.|
T Consensus 159 ~f~~~~g 165 (311)
T KOG4205|consen 159 KFHDFNG 165 (311)
T ss_pred ceeeecC
Confidence 3344443
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=3.1e-17 Score=129.15 Aligned_cols=82 Identities=24% Similarity=0.627 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.+++|||+|||+.+++++|+.+|++||.|.++.++.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 019068 180 AK 181 (346)
Q Consensus 180 ~~ 181 (346)
++
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 53
No 49
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.72 E-value=2.3e-16 Score=126.66 Aligned_cols=228 Identities=17% Similarity=0.205 Sum_probs=132.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeC-CCCCCCcceEEEEecCHHHHHHHHHHhcCcccc---CceeE
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIR 174 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 174 (346)
..-+||||.+||.++...+|..+|..|--...+.+... +.....+.+|||.|.+...|.+|+..|||..|+ +.+|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 35789999999999999999999999866666666543 222234579999999999999999999999984 88999
Q ss_pred EeecCccccceecCCC--CCCCHHHHHHHHHhhCCCee-EEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCccc
Q 019068 175 CSTSQAKYRLFIGNIP--RNWGSEDLQKVVSEVGPGVT-GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251 (346)
Q Consensus 175 v~~~~~~~~l~v~~l~--~~~~~~~l~~~f~~~g~~i~-~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 251 (346)
+..++.+.+.--.... +.... -+... ..+..+. .....++ .+....+- ...... ..|+ .... .
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~-al~~~--~~~~~qr~sa~~qhd---~~l~~p~~---l~~~~~-a~al---~~~~-~ 177 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSP-ALVID--NRNKEQRKSADDQHD---EGLSDPDE---LQEPGN-ADAL---KEND-T 177 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCc-ccccc--ccChhhcccchhhcc---ccccCccc---cCCccc-cccC---CCcc-c
Confidence 9998765332211111 00000 00000 0000000 0000000 00000000 000000 0000 0000 0
Q ss_pred CCCCCc--eeeecCC-------CCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEE
Q 019068 252 LGTNAP--TVSWADP-------RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322 (346)
Q Consensus 252 ~~~~~~--~v~~~~~-------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV 322 (346)
.....+ ...|..+ .....+......||||.||...+++++|+.+|+.|-....++|.-. +|. ..||+
T Consensus 178 t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~ 253 (284)
T KOG1457|consen 178 TKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFA 253 (284)
T ss_pred cchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEee
Confidence 000000 0011100 0111133344689999999999999999999999987666665322 222 48999
Q ss_pred EeCCHHHHHHHHHHhcCcccCC
Q 019068 323 HFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 323 ~f~~~~~A~~Al~~lng~~i~g 344 (346)
+|...+.|..|+..|+|..|..
T Consensus 254 ~~~~~~~at~am~~lqg~~~s~ 275 (284)
T KOG1457|consen 254 DFEEIEQATDAMNHLQGNLLSS 275 (284)
T ss_pred cHHHHHHHHHHHHHhhcceecc
Confidence 9999999999999999998753
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=1.5e-15 Score=132.16 Aligned_cols=225 Identities=18% Similarity=0.212 Sum_probs=180.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc--CceeEEeecCc
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRCSTSQA 180 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~~~ 180 (346)
+++|.|+-+.++-+-|..+|++||.|..|.-... ...-.|.|+|.+...|..|-..|+|..|- -.+|+|.++.-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 5788999999999999999999999977654332 23445999999999999999999998873 35677766531
Q ss_pred c---------------------------------------------------------------------ccceecCCCC
Q 019068 181 K---------------------------------------------------------------------YRLFIGNIPR 191 (346)
Q Consensus 181 ~---------------------------------------------------------------------~~l~v~~l~~ 191 (346)
. ..|.|.||..
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 0 1244555544
Q ss_pred -CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCC-
Q 019068 192 -NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS- 269 (346)
Q Consensus 192 -~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~- 269 (346)
.+|.+.|..+|.-||. |.++.|+.. .+.-|.|++.+...|+.|+.+|.+ .++.|+.+++.++.......
T Consensus 308 ~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g--~~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEG--HKLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred hccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhc--ceecCceEEEeeccCccccCC
Confidence 5799999999999999 999999987 246799999999999999999998 46888999998876443211
Q ss_pred ------------------------------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEE-EeCCCCCCCCCCC
Q 019068 270 ------------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNR 318 (346)
Q Consensus 270 ------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~~~g 318 (346)
...+++.+|-+.|+|.++++++|+.+|..-|-..+. ++... .+.
T Consensus 379 ~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k-----d~k 453 (492)
T KOG1190|consen 379 REGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK-----DRK 453 (492)
T ss_pred CCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC-----Ccc
Confidence 124557899999999999999999999999876543 33222 256
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 319 IGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 319 ~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
+|++++.+.+.|..|+..++++.+++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCC
Confidence 999999999999999999999998875
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.69 E-value=3e-15 Score=128.84 Aligned_cols=231 Identities=20% Similarity=0.267 Sum_probs=186.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHH--hcCccccCceeE
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK--LNNTEFKGKKIR 174 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~--l~~~~~~g~~l~ 174 (346)
.+..+..|.|++|-..+++.+|-+.++.||+|..+..+.. +..|.|+|.+.+.|..|+.. -+...+.|+.-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 3456778999999999999999999999999999988764 66899999999999999852 234556777666
Q ss_pred EeecCc-------------cccce--ecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHH
Q 019068 175 CSTSQA-------------KYRLF--IGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (346)
Q Consensus 175 v~~~~~-------------~~~l~--v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 239 (346)
+.++.+ .+-|. |-|--+.+|-+-|..++...|. |.++-|.+. .--.|.|+|.+.+.|+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHHH
Confidence 655521 22333 3444456789999999999999 888888765 2456899999999999
Q ss_pred HHHHHhcCCcccCCCCCceeeecCCCCCCC--------------------------------------------------
Q 019068 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDS-------------------------------------------------- 269 (346)
Q Consensus 240 ~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~-------------------------------------------------- 269 (346)
+|.+.|++..+..+..++.+.|+.|...+-
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 999999999988888888888776553110
Q ss_pred ----------------------------cccccceEEEEcCCCc-ccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEE
Q 019068 270 ----------------------------SGASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320 (346)
Q Consensus 270 ----------------------------~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~a 320 (346)
....+...++|.+|.. .++-+.|+.+|..||.|..|++++.+ .|.|
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gta 328 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTA 328 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----ccee
Confidence 0011257899999975 57889999999999999999999887 6899
Q ss_pred EEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 321 FVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 321 fV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
+|++.+....++|+.+|||..+-|.
T Consensus 329 mVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 329 MVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred EEEcCcHHHHHHHHHHhccCccccc
Confidence 9999999999999999999888775
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.67 E-value=3.7e-16 Score=123.04 Aligned_cols=72 Identities=22% Similarity=0.450 Sum_probs=69.2
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+++|||+|||..+++++|+++|.+||.|.++.|+.++.++.++|||||+|.+.++|.+||..|||..|+||+
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 479999999999999999999999999999999999999999999999999999999999999999999974
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=6.8e-16 Score=106.72 Aligned_cols=70 Identities=40% Similarity=0.840 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 104 l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
|||+|||+++++++|+.+|++||.|..+.+..+ .++.++++|||+|.+.++|.+|+..++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 5789999999999999999999999999999999885
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=5.4e-16 Score=107.20 Aligned_cols=68 Identities=29% Similarity=0.559 Sum_probs=63.6
Q ss_pred EEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
|||+|||..+++++|+++|++||.|..+.+.++ .++..+|+|||+|.+.++|.+|+..|||..|+|++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ 68 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRK 68 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccC
Confidence 799999999999999999999999999999998 55566899999999999999999999999999973
No 55
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.61 E-value=3e-14 Score=123.11 Aligned_cols=242 Identities=16% Similarity=0.235 Sum_probs=174.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 96 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
........|..++|||..+..+|..+|+-.-...-.+.+....-|+..|.|.|.|.+.+.-.-|++ -|...+.++.|.|
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryiev 133 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEV 133 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceee
Confidence 334456678999999999999999999875443333333333457889999999999999999996 6777788888888
Q ss_pred eecCcc----------------------ccceecCCCCCCCHHHHHHHHHhhCC---CeeEEEEeeCCCCCCCCccEEEE
Q 019068 176 STSQAK----------------------YRLFIGNIPRNWGSEDLQKVVSEVGP---GVTGVELVKDMKNSSNNRGFAFI 230 (346)
Q Consensus 176 ~~~~~~----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~---~i~~~~~~~~~~~~~~~~g~~~v 230 (346)
-.+... -.+-.++||+.++..++..+|....+ +...+-+++. ..|+..|=|||
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFv 211 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFV 211 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEE
Confidence 665422 12455899999999999999974322 2556666664 67888999999
Q ss_pred EeCChhHHHHHHHHhcCCcccCCCCCceee----------------------ecC------CCCCCCcccccceEEEEcC
Q 019068 231 EYHNHKCAEYSRQKMTNPNFKLGTNAPTVS----------------------WAD------PRNVDSSGASQVKAVYVKN 282 (346)
Q Consensus 231 ~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~----------------------~~~------~~~~~~~~~~~~~~l~V~n 282 (346)
.|...++|+.|+.+-.. .++.+-+-+- ... +.... .......+|.+++
T Consensus 212 lfa~ee~aq~aL~khrq---~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~-p~~~~kdcvRLRG 287 (508)
T KOG1365|consen 212 LFACEEDAQFALRKHRQ---NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLV-PPTRSKDCVRLRG 287 (508)
T ss_pred EecCHHHHHHHHHHHHH---HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccC-CCCCCCCeeEecC
Confidence 99999999998875432 1111110000 000 00000 1112258999999
Q ss_pred CCcccCHHHHHHHhhccCc-EE--EEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 283 LPRNVTQDQLKKLFEHHGR-IT--KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 283 Lp~~~t~~~L~~~F~~~G~-v~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
||+..+.++|..+|..|.. |. .|.++.+..+.. .|-|||+|.+.+.|..|.+..++....+|
T Consensus 288 LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrP-SGeAFIqm~nae~a~aaaqk~hk~~mk~R 352 (508)
T KOG1365|consen 288 LPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRP-SGEAFIQMRNAERARAAAQKCHKKLMKSR 352 (508)
T ss_pred CChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCc-ChhhhhhhhhhHHHHHHHHHHHHhhcccc
Confidence 9999999999999999875 33 367777765554 69999999999999999998777766544
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.6e-14 Score=111.64 Aligned_cols=150 Identities=17% Similarity=0.312 Sum_probs=126.5
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
..++|||+|||..+.+.+|..+|.+||. |..|.+... ....+||||+|.++-+|..|+..-++ ....+..++|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~-i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygRdG--Ydydg~rLRV 77 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGR-IREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGRDG--YDYDGCRLRV 77 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcc-eEEEEeccC----CCCCCeeEEEecCccchhhhhhcccc--cccCcceEEE
Confidence 3568999999999999999999999999 888877543 34578999999999999999987776 5678888998
Q ss_pred eecCCCCCCC----------------------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCC
Q 019068 260 SWADPRNVDS----------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317 (346)
Q Consensus 260 ~~~~~~~~~~----------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~ 317 (346)
.++....... .+......|.|++||.+-++.+|++.....|.|....+.++
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------- 150 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------
Confidence 8876543211 22333589999999999999999999999999999888887
Q ss_pred CEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 318 RIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 318 g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
|++.|+|...++..-|+++|....+.
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcccccc
Confidence 69999999999999999999887653
No 57
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=8.8e-15 Score=101.13 Aligned_cols=70 Identities=44% Similarity=0.819 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 104 l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
|||+|||+.+++++|+++|+.||.|..+.+..++. |.++|+|||+|.+.++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999888999999874
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=3.7e-15 Score=103.06 Aligned_cols=68 Identities=31% Similarity=0.557 Sum_probs=62.6
Q ss_pred EEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
|+|+|||..++.++|+++|+.||.|..+++...+. +..+|+|||+|.+.++|.+|++.++|..|+||+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 79999999999999999999999999999999977 677899999999999999999999999999984
No 59
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=8.6e-15 Score=119.38 Aligned_cols=82 Identities=29% Similarity=0.496 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
...+|.|.|||.++++.+|+.+|.+||.|..+.+.+++.||.++|||||.|.+.++|.+||..|||.-+..--|+|.++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 019068 180 AK 181 (346)
Q Consensus 180 ~~ 181 (346)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 74
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=102.00 Aligned_cols=71 Identities=24% Similarity=0.439 Sum_probs=65.4
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
+..++.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|.|||.|.+..+|.+|+.+|+|+.+.+|
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 334589999999999999999999999999999999877766 68999999999999999999999999886
No 61
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=6.2e-14 Score=124.00 Aligned_cols=176 Identities=28% Similarity=0.525 Sum_probs=130.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
.++|||+|||+.+++++|..+|.+||.|..+.+..++.+|.++|+|||.|.+.++|..|+..+++..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999988763
Q ss_pred --cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCce
Q 019068 181 --KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (346)
Q Consensus 181 --~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 258 (346)
.......++ .. ..+.. ..
T Consensus 195 ~~~~~~~~~~~--------------------------~~-------------------------~~~~~------~~--- 214 (306)
T COG0724 195 ASQPRSELSNN--------------------------LD-------------------------ASFAK------KL--- 214 (306)
T ss_pred ccccccccccc--------------------------cc-------------------------hhhhc------cc---
Confidence 000000000 00 00000 00
Q ss_pred eeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc
Q 019068 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (346)
Q Consensus 259 v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln 338 (346)
.............+++.|++..++...+...|..+|.+....+...........+.++.+.....+..++....
T Consensus 215 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (306)
T COG0724 215 ------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGN 288 (306)
T ss_pred ------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcccc
Confidence 00000112223789999999999999999999999999888887777665545555666666666666665544
Q ss_pred Cccc
Q 019068 339 KYEL 342 (346)
Q Consensus 339 g~~i 342 (346)
+...
T Consensus 289 ~~~~ 292 (306)
T COG0724 289 KKKI 292 (306)
T ss_pred ceee
Confidence 4443
No 62
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=4.9e-16 Score=120.85 Aligned_cols=80 Identities=28% Similarity=0.592 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.+.-|||+|||+.+|+.+|...|++||.|..|.+++++.||.++||||+.|.++.+...|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998764
No 63
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=3.4e-14 Score=119.64 Aligned_cols=77 Identities=18% Similarity=0.362 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|||+|||+.+++++|+.+|+.||.|.+|.|+++.. ++|||||+|.+.++|..||. |+|..+.|+.|+|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 367999999999999999999999999999999998853 57999999999999999995 99999999999999986
Q ss_pred c
Q 019068 180 A 180 (346)
Q Consensus 180 ~ 180 (346)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 3
No 64
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.3e-14 Score=117.95 Aligned_cols=78 Identities=28% Similarity=0.658 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
-+.|||+||+|.+..+.|+.+|.+||.|..+.++.++.||+++|||||+|++.++|.+|++. ..-.|+||+..+..+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 45799999999999999999999999999999999999999999999999999999999973 3467899998887664
No 65
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.6e-14 Score=118.38 Aligned_cols=161 Identities=27% Similarity=0.458 Sum_probs=124.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCcc
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (346)
..|||++||+.+.+.+|..||..||.|..+.+. .||+||.|.+..+|.-|+..+++..+.|..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999998874 568899999999999999999999999988888777632
Q ss_pred ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeee
Q 019068 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (346)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 261 (346)
..-- |. ..-|..++ |
T Consensus 74 ~~~~--------------------g~-----------~~~g~r~~----------------------------------~ 88 (216)
T KOG0106|consen 74 RRGR--------------------GR-----------PRGGDRRS----------------------------------D 88 (216)
T ss_pred cccc--------------------CC-----------CCCCCccc----------------------------------h
Confidence 1100 10 00000000 0
Q ss_pred cCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
..... ......+.|+|.|++..+.+.+|.+.|+++|.+....+ .++++||+|.+..+|..|+..|+|..
T Consensus 89 ~~~~~---~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRRYR---PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhccC---CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchh
Confidence 00000 00111278999999999999999999999999855544 25799999999999999999999999
Q ss_pred cCCCC
Q 019068 342 LDGDH 346 (346)
Q Consensus 342 i~gr~ 346 (346)
+.|++
T Consensus 158 ~~~~~ 162 (216)
T KOG0106|consen 158 LNGRR 162 (216)
T ss_pred hcCce
Confidence 99875
No 66
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.53 E-value=4e-12 Score=109.76 Aligned_cols=228 Identities=21% Similarity=0.274 Sum_probs=176.5
Q ss_pred CEEEEc--CCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc--cCceeEEee
Q 019068 102 SEVYIG--GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--KGKKIRCST 177 (346)
Q Consensus 102 ~~l~v~--nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~ 177 (346)
+.|.+. |--+.+|.+-|..++...|+|.+|.|.+. +--.|.|+|.+.+.|++|...|||..| .--+|+|.+
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 344444 44467899999999999999999998864 344799999999999999999999887 346889988
Q ss_pred cCcc----------------------------------------------------------------------------
Q 019068 178 SQAK---------------------------------------------------------------------------- 181 (346)
Q Consensus 178 ~~~~---------------------------------------------------------------------------- 181 (346)
+++.
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 8753
Q ss_pred ------------ccceecCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCC
Q 019068 182 ------------YRLFIGNIPR-NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (346)
Q Consensus 182 ------------~~l~v~~l~~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 248 (346)
.-+.|.+|.. .++-+.|-++|..||. |..+.+++- -.|.|.|+..+....++|+.+|++.
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rvkFmkT------k~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERVKFMKT------KPGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeEEEeec------ccceeEEEcCcHHHHHHHHHHhccC
Confidence 1233444443 2455788899999999 999999987 2578999999999999999999985
Q ss_pred cccCCCCCceeeecCCCCCCC---------------------------------cccccceEEEEcCCCcccCHHHHHHH
Q 019068 249 NFKLGTNAPTVSWADPRNVDS---------------------------------SGASQVKAVYVKNLPRNVTQDQLKKL 295 (346)
Q Consensus 249 ~~~~~~~~~~v~~~~~~~~~~---------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~ 295 (346)
. +-|.++.+-.+....... ...+++++|-.-|.|..+|++.|..+
T Consensus 349 ~--lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i 426 (494)
T KOG1456|consen 349 P--LFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGI 426 (494)
T ss_pred c--cccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHH
Confidence 5 456555554332221100 22344789999999999999999999
Q ss_pred hhccCc-EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 296 FEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 296 F~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
|...+. ..+|++.+.+.... --+.++|.+..+|..||..||.+.|.|.
T Consensus 427 ~nek~v~~~svkvFp~kserS--ssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 427 CNEKDVPPTSVKVFPLKSERS--SSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred hhhcCCCcceEEeeccccccc--ccceeeeehHHHHHHHHHHhccccccCC
Confidence 987664 56788877774444 3689999999999999999999999873
No 67
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.5e-14 Score=104.96 Aligned_cols=81 Identities=17% Similarity=0.353 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..++||||+||++-+++++|.++|+++|.|..|.+-.++.+..+-|||||+|-+.++|..|++.+++..+..+.|++.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999999999989999999999999999999999999999999999999875
Q ss_pred C
Q 019068 179 Q 179 (346)
Q Consensus 179 ~ 179 (346)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.52 E-value=2e-13 Score=122.05 Aligned_cols=150 Identities=18% Similarity=0.303 Sum_probs=114.4
Q ss_pred cceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeec
Q 019068 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262 (346)
Q Consensus 183 ~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~ 262 (346)
-|-+++|||++|.++|..+|+.++ |.++.+.+ .+|+..|=|||+|.+.+++.+|+++-.. .++.+-|-|--+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~AlkkdR~---~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKDRE---SMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhhHH---HhCCceEEEEcc
Confidence 345689999999999999999997 88865554 4789999999999999999999986432 345555544333
Q ss_pred --------CCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEE-EEeCCCCCCCCCCCEEEEEeCCHHHHHHH
Q 019068 263 --------DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (346)
Q Consensus 263 --------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A 333 (346)
.....+.+. .+..+|.+++||+.||+++|.++|+.--.|.. |-++.+..+. +.|-|||+|.+.+.|++|
T Consensus 84 ~~~e~d~~~~~~g~~s~-~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSS-ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGR-PTGEAFVQFESQESAEIA 161 (510)
T ss_pred CCccccccccCCCCCCC-CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCC-cccceEEEecCHHHHHHH
Confidence 222222221 45589999999999999999999998765555 5566666555 579999999999999999
Q ss_pred HHHhcCcccC
Q 019068 334 LKNTEKYELD 343 (346)
Q Consensus 334 l~~lng~~i~ 343 (346)
|+ -|...|+
T Consensus 162 l~-rhre~iG 170 (510)
T KOG4211|consen 162 LG-RHRENIG 170 (510)
T ss_pred HH-HHHHhhc
Confidence 98 4444443
No 69
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=5e-14 Score=109.24 Aligned_cols=76 Identities=26% Similarity=0.485 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
-.+.|||+||+..++..+|...|..||+|.+|+|-.+ +.|||||+|.++.+|..|+..|+|..|.|..|+|..+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3678999999999999999999999999999999886 58999999999999999999999999999999999876
Q ss_pred c
Q 019068 180 A 180 (346)
Q Consensus 180 ~ 180 (346)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 70
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6.9e-14 Score=117.29 Aligned_cols=80 Identities=19% Similarity=0.414 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.-+||||+-|++++++..|+..|..||+|+.|+|+.+..||.++|||||+|.+..+...|.+..+|..|.|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998765
No 71
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.5e-14 Score=115.89 Aligned_cols=70 Identities=30% Similarity=0.488 Sum_probs=67.2
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
..++|.|.|||.++++.+|.++|.+||.|..+++.+++.+|.+||||||.|.+.++|.+||..|||+-++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd 257 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD 257 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc
Confidence 4589999999999999999999999999999999999999999999999999999999999999998764
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.7e-14 Score=103.52 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=67.9
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+||||+||+..+++++|.++|+.+|.|..|.+-.++.+..+=||+||+|-+.++|..|++.++|+.|+.|+
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ 107 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRP 107 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccc
Confidence 89999999999999999999999999999999999988888899999999999999999999999998774
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=6.5e-14 Score=117.93 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=62.9
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++|||+|||+.+++++|+++|+.||.|.+|+|++++. ++|||||+|.+.++|..||. |||..|.||+
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~ 71 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQS 71 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCce
Confidence 7999999999999999999999999999999998864 36899999999999999996 9999999984
No 74
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.7e-13 Score=113.54 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
+.+.||||+||++.+|+++|+.||+.||.|.+|+|+++. ...++|||+|.++++|..|+ .|+|..|.++.|.|.+.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 457899999999999999999999999999999999984 45689999999999999999 59999999999999886
Q ss_pred C
Q 019068 179 Q 179 (346)
Q Consensus 179 ~ 179 (346)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.3e-13 Score=122.99 Aligned_cols=78 Identities=21% Similarity=0.464 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCH--HHHHHHHHHhcCccccCceeEEee
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV--ELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
...+||||||++.+++++|..+|+.||.|.+|.|++ .+| +|||||+|.+. .++.+||..|||..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 456899999999999999999999999999999994 467 99999999987 789999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9864
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2.6e-13 Score=95.86 Aligned_cols=81 Identities=25% Similarity=0.422 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+.-.+.|||+|||+++|.+++..+|.+||.|..|+|-..+ ..+|.|||.|.+..+|.+|+..|+|..+.++.|.|.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3457789999999999999999999999999999997654 4699999999999999999999999999999999998
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
.++.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 8754
No 77
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=3.8e-13 Score=92.86 Aligned_cols=72 Identities=38% Similarity=0.719 Sum_probs=67.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
+|||+|||..++..+|+.+|.+||.|..+.+..+. +.++|+|||+|.+.+.|..|+..+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7789999999999999999999999999999998873
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.2e-13 Score=117.19 Aligned_cols=81 Identities=30% Similarity=0.487 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|+|+|||+...+.||+.+|.+||.|.+|.||.+.. -++|||||+|.+.++|.+|-..|||..|.||+|.|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 3567899999999999999999999999999999999853 48999999999999999999999999999999999988
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 643
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=1.9e-12 Score=113.93 Aligned_cols=160 Identities=23% Similarity=0.351 Sum_probs=130.3
Q ss_pred cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceee
Q 019068 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (346)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 260 (346)
.+.+||.|||+.+.+++|+.+|......|.+|.++.+ .+|+++|+|.|+|..++.+++|+..|+. +.++++.+.|.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEEEe
Confidence 3569999999999999999999876444999999998 8999999999999999999999999987 34666666554
Q ss_pred ecCCCC-----------------------------------------------------CCC------------------
Q 019068 261 WADPRN-----------------------------------------------------VDS------------------ 269 (346)
Q Consensus 261 ~~~~~~-----------------------------------------------------~~~------------------ 269 (346)
-..... ...
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 221100 000
Q ss_pred ----------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 270 ----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 270 ----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
-.++-...+||.||.+.+.-..|.+.|.-.|.|..|.+..++.+ .++||+.++|+.+-.|-.||..|++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG-~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG-NSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc-ccCCeeEEEecchHHHHHHHHhhcc
Confidence 01222478999999999999999999999999999999999888 5589999999999999999999987
Q ss_pred cccCCC
Q 019068 340 YELDGD 345 (346)
Q Consensus 340 ~~i~gr 345 (346)
.-+..|
T Consensus 279 ~g~~~~ 284 (608)
T KOG4212|consen 279 QGLFDR 284 (608)
T ss_pred CCCccc
Confidence 444433
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=1.5e-13 Score=109.33 Aligned_cols=81 Identities=23% Similarity=0.457 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..-.+|.|-||.+.++.++|+.+|.+||.|-+|.|.++..|+.++|||||.|....+|..|+..|+|.++.|+.|+|..|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 019068 179 Q 179 (346)
Q Consensus 179 ~ 179 (346)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 5
No 81
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.3e-13 Score=117.01 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=70.4
Q ss_pred CCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 267 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+++.....++|.|+|||+..-+-||+.+|.+||+|.+|.|+.+..+ +||||||+|.+.++|.+|..+|+|..|.||+
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG--SKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG--SKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC--CCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 33444555699999999999999999999999999999999988765 4799999999999999999999999999995
No 82
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=9.8e-15 Score=113.69 Aligned_cols=99 Identities=19% Similarity=0.368 Sum_probs=80.9
Q ss_pred HHHHHhcCCcccCCCCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCE
Q 019068 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319 (346)
Q Consensus 240 ~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~ 319 (346)
+.+..|+...+.++... ..+|-..... +.-|||+|||+.+|+-+|.-.|++||.|+.|.+++++.||.++||
T Consensus 8 k~i~~lne~Elq~g~~~-~~SWH~~Ykd-------sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGF 79 (219)
T KOG0126|consen 8 KNIQKLNERELQLGIAD-KKSWHQEYKD-------SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGF 79 (219)
T ss_pred HHHHHhhHHhhcccccc-ccchhhhccc-------ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccce
Confidence 33445555444433322 4455443332 268999999999999999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 320 GFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 320 afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
||+.|.+..+...|+..|||.+|.||.
T Consensus 80 aFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 80 AFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred EEEEecCccceEEEEeccCCceeccee
Confidence 999999999999999999999999984
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.8e-13 Score=113.66 Aligned_cols=74 Identities=19% Similarity=0.403 Sum_probs=70.9
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+-+||||.-|++.+++..|+..|..||.|..|+|+++..++.++|||||+|....+...|+...+|.+|+||.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 44489999999999999999999999999999999999999999999999999999999999999999999973
No 84
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2.4e-13 Score=110.69 Aligned_cols=70 Identities=27% Similarity=0.487 Sum_probs=64.8
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.|||++|+..+..+.|+++|.+||.|+...++.|+.++++||||||+|.+.++|.+|+... +-.|+||+
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~ 82 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRK 82 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccc
Confidence 78999999999999999999999999999999999999999999999999999999999953 45566664
No 85
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=4.8e-13 Score=92.38 Aligned_cols=68 Identities=32% Similarity=0.572 Sum_probs=63.1
Q ss_pred EEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+|+|+|||..++..+|+.+|..||.|..+.+.+.. +.++|+|||+|.+.+.|.+|+..++|..|.|++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 58999999999999999999999999999999887 456899999999999999999999999999864
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=4.1e-13 Score=111.25 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=62.6
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..||||+||++.+|+++|+++|+.||.|.+|+|+++..+ +|||||+|.++++|..|+. |||..|.|++
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-LnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-LSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-cCCCeeCCce
Confidence 479999999999999999999999999999999999533 4799999999999999996 9999999874
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.44 E-value=2.3e-13 Score=108.22 Aligned_cols=71 Identities=28% Similarity=0.519 Sum_probs=69.3
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
..+|.|-||.+.++.++|+.+|.+||.|.+|.|++++.|..++|||||.|....+|+.|+.+|+|..|+||
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999997
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=1.1e-12 Score=90.27 Aligned_cols=71 Identities=37% Similarity=0.761 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 106 v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
|+|||..++.++|+.+|.+||.|..+.+..++.++.++|+|||+|.+.++|..|+..+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988788999999999999999999999999999999998873
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=8.3e-13 Score=90.83 Aligned_cols=67 Identities=36% Similarity=0.553 Sum_probs=63.0
Q ss_pred EcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 280 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
|+|||..++.++|+.+|..||.|..+.+.+.+.++.++|+|||+|.+.++|..|+..|+|..++|++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~ 67 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP 67 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE
Confidence 6899999999999999999999999999998877788999999999999999999999999999874
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=7.5e-13 Score=98.10 Aligned_cols=80 Identities=25% Similarity=0.482 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
++-.|||.++...+++++|...|..||+|+.+.+-.+..||..+|||.|+|.+...|++|+..+||..+.|+.|.|.||-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999874
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.1e-12 Score=117.09 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=62.6
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCH--HHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER--SSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~Al~~lng~~i~gr~ 346 (346)
..+|||+||++.+++++|+.+|..||.|.+|.|++. ++ ||||||+|.+. .++.+||..|||..|.||.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~ 79 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR 79 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence 379999999999999999999999999999999944 44 79999999987 7899999999999999984
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=6e-12 Score=87.27 Aligned_cols=74 Identities=41% Similarity=0.772 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+|+|+|||+.+++++|+.+|..||.|..+.+...+.+ .++|+|||+|.+.++|..|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 6799999999999999999999999999999998863
No 93
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=9.5e-13 Score=102.22 Aligned_cols=65 Identities=26% Similarity=0.421 Sum_probs=61.9
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
+.|||+||+..++..+|..+|..||.+..|.|.+.+ .|||||+|.++.+|..|+..|+|..|-|.
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~ 75 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGS 75 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCc
Confidence 799999999999999999999999999999998865 79999999999999999999999999874
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8.8e-13 Score=105.91 Aligned_cols=84 Identities=27% Similarity=0.568 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....+||||++|...+++.-|.+.|-.||.|..|.+..+..+++++|||||+|.-.++|.+|+..||+..+.|++|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.|.
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 9875
No 95
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=3.4e-12 Score=116.49 Aligned_cols=79 Identities=34% Similarity=0.659 Sum_probs=77.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
+.|||||||+.+++++|..+|+..|.|.+++++.|+.||.++||||++|.+.+.|..|++.|||..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999864
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=7.9e-12 Score=86.67 Aligned_cols=69 Identities=32% Similarity=0.566 Sum_probs=63.8
Q ss_pred EEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+|+|+|||..++.++|+++|+.||.|..+.+.....+ .++|+|||+|.+.++|..|+..+++..++|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~ 69 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRP 69 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4899999999999999999999999999999988766 44799999999999999999999999998874
No 97
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=2.5e-13 Score=128.72 Aligned_cols=215 Identities=17% Similarity=0.188 Sum_probs=177.1
Q ss_pred CCCEEEEcCCCCCCCHH-HHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIPHDASEH-DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~-~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
.....++.|+.+..... ..+..|+.+|.|..|++......-....++++.+....++..|.. ..+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34457777887777665 567789999999999987733323344489999999999999994 7888899999888877
Q ss_pred Ccc----------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHH
Q 019068 179 QAK----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242 (346)
Q Consensus 179 ~~~----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 242 (346)
.+. .++|+.||++.+...+|...|..+|. +..+++... ...++.+|+||+.|...+++.+|+
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhhhh
Confidence 653 36899999999999999999999998 888888743 678899999999999999999999
Q ss_pred HHhcCCcccCCCCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEE
Q 019068 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322 (346)
Q Consensus 243 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV 322 (346)
.......+ | ...|||+|+|+..|.+.|+.+|+.+|.+.+++++..+.+.. +|.|||
T Consensus 727 ~f~d~~~~---g--------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkp-kg~a~v 782 (881)
T KOG0128|consen 727 AFRDSCFF---G--------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKP-KGKARV 782 (881)
T ss_pred hhhhhhhh---h--------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccc-ccceec
Confidence 86554221 1 16899999999999999999999999999999888776554 899999
Q ss_pred EeCCHHHHHHHHHHhcCcc
Q 019068 323 HFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 323 ~f~~~~~A~~Al~~lng~~ 341 (346)
.|.+..+|.+++...++.-
T Consensus 783 ~y~~ea~~s~~~~s~d~~~ 801 (881)
T KOG0128|consen 783 DYNTEADASRKVASVDVAG 801 (881)
T ss_pred cCCCcchhhhhcccchhhh
Confidence 9999999999987765543
No 98
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=5.5e-12 Score=86.79 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=50.4
Q ss_pred HHHHHHHhh----ccCcEEEEE-eCCCCCC--CCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 289 QDQLKKLFE----HHGRITKVV-VPPAKPG--QEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 289 ~~~L~~~F~----~~G~v~~v~-i~~~~~~--~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+++|+++|+ .||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|+..|||+.|.||+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 467888888 999999985 6655555 778999999999999999999999999999984
No 99
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=2.2e-11 Score=110.81 Aligned_cols=71 Identities=28% Similarity=0.493 Sum_probs=65.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
...++|+|-|||..++.++|..+|..||.|+.|+.-+. .+|.+||+|-+..+|.+|++.|++..+.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 35789999999999999999999999999999776554 689999999999999999999999999999888
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.29 E-value=5e-12 Score=115.36 Aligned_cols=71 Identities=23% Similarity=0.448 Sum_probs=69.7
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.+||+|+|+++++++|..+|+..|.|.+++++.|+.+|..+||||++|.+.++|..|++.|||+.++||+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~ 89 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRK 89 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCce
Confidence 78999999999999999999999999999999999999999999999999999999999999999999985
No 101
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=2.7e-11 Score=83.28 Aligned_cols=61 Identities=26% Similarity=0.470 Sum_probs=55.1
Q ss_pred HHHHHHHHH----ccCCeEEEE-EeeCCCC--CCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 115 EHDLRDFCQ----SIGEVTEVR-IMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 115 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
+++|+.+|+ +||.|.++. ++.++.+ +.++|+|||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888998 999999996 6666656 899999999999999999999999999999999986
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.2e-10 Score=105.12 Aligned_cols=168 Identities=19% Similarity=0.292 Sum_probs=113.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeC--CCCCCCcc---eEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG--KDSSENKG---FAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~--~~~~~~~g---~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
-++.|||++||++++++.|...|..||.+.-=+-.+. ...-.++| |+|+.|.+...+...+..... ....+-
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 4678999999999999999999999998753332111 11124566 999999999998887765432 222222
Q ss_pred EeecCccc-cceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCC
Q 019068 175 CSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (346)
Q Consensus 175 v~~~~~~~-~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 253 (346)
+..+.+.- ...|. |...++.-. -||.+ ....
T Consensus 335 f~vss~~~k~k~VQ---------------------IrPW~laDs----------~fv~d---------------~sq~-- 366 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQ---------------------IRPWVLADS----------DFVLD---------------HNQP-- 366 (520)
T ss_pred EEEecCccccccee---------------------EEeeEeccc----------hhhhc---------------cCcc--
Confidence 22222110 00111 111111100 01110 0011
Q ss_pred CCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhh-ccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHH
Q 019068 254 TNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332 (346)
Q Consensus 254 ~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 332 (346)
..+.+||||++||..++.++|..+|. -||.|..+-|-.|..-+-++|-|-|+|.+.++=.+
T Consensus 367 ------------------lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~ 428 (520)
T KOG0129|consen 367 ------------------IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIK 428 (520)
T ss_pred ------------------cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHH
Confidence 12238999999999999999999999 79999999999996666679999999999999999
Q ss_pred HHHH
Q 019068 333 ALKN 336 (346)
Q Consensus 333 Al~~ 336 (346)
||.+
T Consensus 429 AIsa 432 (520)
T KOG0129|consen 429 AISA 432 (520)
T ss_pred HHhh
Confidence 9986
No 103
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=1.6e-11 Score=108.42 Aligned_cols=72 Identities=29% Similarity=0.527 Sum_probs=69.5
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|.++|..||.|..+.+..++.++.++|||||+|.+.++|..|+..++|..|.||+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 489999999999999999999999999999999999988889999999999999999999999999999984
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=3.5e-11 Score=78.94 Aligned_cols=56 Identities=43% Similarity=0.748 Sum_probs=50.9
Q ss_pred HHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 118 l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
|+.+|++||.|..+.+.... +++|||+|.+.++|.+|+..|||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997753 689999999999999999999999999999999875
No 105
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.9e-12 Score=108.05 Aligned_cols=85 Identities=18% Similarity=0.389 Sum_probs=80.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
+..+.|||..|.+-++.++|.-+|+.||+|.+|.++++..||-+..||||+|.+.+++.+|.-.|++..|..++|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccccc
Q 019068 179 QAKYR 183 (346)
Q Consensus 179 ~~~~~ 183 (346)
++-.+
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 75433
No 106
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.8e-12 Score=100.49 Aligned_cols=72 Identities=31% Similarity=0.475 Sum_probs=69.7
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+||||++|...+++.-|...|-+||.|..|.||.+..++++||||||+|.-.++|.+|+..||+..|-||.
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grt 81 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRT 81 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhccee
Confidence 389999999999999999999999999999999999999999999999999999999999999999999984
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=2.7e-11 Score=89.96 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=67.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.-.|||.++....++++|.+.|..||.|.+|.+-.++.++-.+|||+|+|.+..+|++|+..|||..|-|.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999888774
No 108
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=5.7e-11 Score=95.05 Aligned_cols=82 Identities=28% Similarity=0.522 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc-CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
....++|..+|....+.+|..+|.++ |.|..+++.+++.||.++|||||+|.+.+.|.-|...||+..+.|+.|.|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45579999999999999999999998 78899999999999999999999999999999999999999999999999876
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.9e-10 Score=105.70 Aligned_cols=161 Identities=21% Similarity=0.420 Sum_probs=126.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..+.+||++||...++.++++++..||++....++.+..+|.++||||-+|.+.-....|+..|||..+.++.|.|..+-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred cccc----------ceecCCCC-----------------CCCH-------------HHHHHHHHhhCCCeeEEEEeeCC-
Q 019068 180 AKYR----------LFIGNIPR-----------------NWGS-------------EDLQKVVSEVGPGVTGVELVKDM- 218 (346)
Q Consensus 180 ~~~~----------l~v~~l~~-----------------~~~~-------------~~l~~~f~~~g~~i~~~~~~~~~- 218 (346)
.... .-+.+|+. -+++ ++++.-+..||. |..|.+.++.
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~~~ 446 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRPYP 446 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCCCC
Confidence 3210 01111111 1222 334456777888 8889888872
Q ss_pred -CCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecC
Q 019068 219 -KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263 (346)
Q Consensus 219 -~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~ 263 (346)
......-|-.||+|.+.+++++|.+.|++.. ..++.+...|..
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK--F~nRtVvtsYyd 490 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRK--FANRTVVASYYD 490 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCce--eCCcEEEEEecC
Confidence 2233456778999999999999999999854 556666555543
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.18 E-value=6.4e-11 Score=77.66 Aligned_cols=50 Identities=30% Similarity=0.484 Sum_probs=45.5
Q ss_pred HHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 292 LKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 292 L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
|.++|++||.|..+.+.+.. +++|||+|.+.++|..|++.|||..|.||+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 50 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRP 50 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 68999999999999998875 489999999999999999999999999974
No 111
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.10 E-value=1.8e-10 Score=92.28 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=66.7
Q ss_pred eEEEEcCCCcccCHHHHHHHhhcc-CcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
..++|..+|..+.+..|..+|.+| |.|..+++.|.+.||+++|||||+|.+.+.|.-|...|||+.|.|+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 689999999999999999999999 7788999999999999999999999999999999999999999886
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.1e-10 Score=96.77 Aligned_cols=84 Identities=21% Similarity=0.468 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
-+++|.|||-.||......+|..+|-.||.|.+.++..++.|+.++.|+||.|.++.+|+.||..|||..|.-++|+|..
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
-+++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 6654
No 113
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.04 E-value=2e-09 Score=100.20 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEE-EEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTE-VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
.+..|||..||..++...+..+|+..-.|++ |.|.+.+ +++..+.|||.|...+.+..|+..-+...+.-+-|+|...
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 4668999999999999999999998777777 5555554 5888999999999999999998766666677777888654
No 114
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=1.3e-10 Score=93.59 Aligned_cols=139 Identities=25% Similarity=0.367 Sum_probs=116.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.++..+||||.|+-..++++-|.++|-+-|+|..|.|..... +..+ ||||.|++.-++.-|+..+||..+.++.+.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 345678999999999999999999999999999999887764 3444 99999999999999999999999999999885
Q ss_pred ecCccccceecC----CCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcC
Q 019068 177 TSQAKYRLFIGN----IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (346)
Q Consensus 177 ~~~~~~~l~v~~----l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 247 (346)
+ +-++ |...++.+.+...|+..|+ +..+++.++ ..|+++.++|+.+........++....+
T Consensus 83 ~-------r~G~shapld~r~~~ei~~~v~s~a~p-~~~~R~~~~--~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 83 L-------RCGNSHAPLDERVTEEILYEVFSQAGP-IEGVRIPTD--NDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred c-------ccCCCcchhhhhcchhhheeeecccCC-CCCcccccc--ccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 4 3354 5566788888899999999 999999888 4588999999988777666666665554
No 115
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.02 E-value=7.6e-10 Score=100.79 Aligned_cols=83 Identities=22% Similarity=0.480 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
...++.|||.+|...+...+|+++|++||+|+-.+++++..+.-.+.|+||++.+.++|.+||..||.+.++|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34577899999999999999999999999999999999988888899999999999999999999999999999999998
Q ss_pred cCc
Q 019068 178 SQA 180 (346)
Q Consensus 178 ~~~ 180 (346)
+..
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 764
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=2.6e-11 Score=115.21 Aligned_cols=135 Identities=24% Similarity=0.347 Sum_probs=118.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
...++||+||+..+...+|...|..+|.+..+++......++.+|+||+.|..++++.+|+. +.-..+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhh---------
Confidence 34579999999999999999999999999888887666778999999999999999999996 55555555
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCC
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 248 (346)
+..++|.|.|+..|.+.++.++..+|. +..++++.. ..|+++|.++|.|.+..++.++.......
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccchhh
Confidence 567899999999999999999999999 888887766 78999999999999999999888765543
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=5.3e-10 Score=106.96 Aligned_cols=159 Identities=18% Similarity=0.277 Sum_probs=135.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...+|||++||+..+++.+|+..|..+|.|..|.|.+-+ .+.-..||||.|.+...+-.|...+.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 357789999999999999999999999999999987653 3556679999999999999999989988886555555554
Q ss_pred ----CccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCC
Q 019068 179 ----QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (346)
Q Consensus 179 ----~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 254 (346)
.....+++++|++......|...|..||+ |..|.+-+. ..|+||.|.+...++.|...+.+.++--..
T Consensus 449 ~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp-ir~Idy~hg-------q~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 449 QPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP-IRIIDYRHG-------QPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred ccccccceeeccCCCCCCChHHHHHHHhhccCc-ceeeecccC-------CcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 34578999999999999999999999999 888777666 789999999999999999999997766666
Q ss_pred CCceeeecCCCC
Q 019068 255 NAPTVSWADPRN 266 (346)
Q Consensus 255 ~~~~v~~~~~~~ 266 (346)
+.++|.++....
T Consensus 521 ~r~rvdla~~~~ 532 (975)
T KOG0112|consen 521 RRLRVDLASPPG 532 (975)
T ss_pred cccccccccCCC
Confidence 778888876543
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.97 E-value=1.5e-09 Score=102.41 Aligned_cols=76 Identities=28% Similarity=0.551 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.++||||++|+.++++.+|.++|..||.|.+|.++. ++|||||.+.+..+|.+|+..|+...+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 688999999999999999999999999999999976 58999999999999999999999999999999999987
Q ss_pred cc
Q 019068 180 AK 181 (346)
Q Consensus 180 ~~ 181 (346)
..
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 43
No 119
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.96 E-value=2.5e-09 Score=87.20 Aligned_cols=68 Identities=26% Similarity=0.494 Sum_probs=61.5
Q ss_pred eEEEEcCCCcccCHHHHHH----HhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKK----LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~----~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.||||.||+..+..++|+. +|+.||.|..|...... +.+|-|||.|.+.+.|..|+..|+|+.|-|++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~---KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP---KMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC---CccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 4999999999999999988 99999999999876543 45899999999999999999999999999874
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.94 E-value=6.2e-09 Score=97.05 Aligned_cols=151 Identities=12% Similarity=0.056 Sum_probs=101.9
Q ss_pred ecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee------
Q 019068 186 IGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV------ 259 (346)
Q Consensus 186 v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v------ 259 (346)
+++.+++....+++.+|...- +....+..+ +..+...|.++|.|.....++.|++.... +. -.+.+.+
T Consensus 316 ~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~--~~-~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 316 YKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPS--DD-VNRPFQTGPPGNL 389 (944)
T ss_pred ecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCch--hh-hhcceeecCCCcc
Confidence 467788888889999887543 555555555 45555688999999999999999764332 11 1111110
Q ss_pred ---------e------------------ecCCC--CCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEE-EEeCC
Q 019068 260 ---------S------------------WADPR--NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPP 309 (346)
Q Consensus 260 ---------~------------------~~~~~--~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~ 309 (346)
. .+... ...+.....+.+|||..||..++...+.++|.....|.+ |.|.+
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~ 469 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR 469 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEecc
Confidence 0 00000 000122233689999999999999999999999888887 66666
Q ss_pred CCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 310 ~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
.. ++..++.|||.|.....+..|+.--..+.++
T Consensus 470 ~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G 502 (944)
T KOG4307|consen 470 LP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPG 502 (944)
T ss_pred CC-cccccchhhheeccccccchhhhcccccccC
Confidence 65 4444889999999999888888754444443
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.93 E-value=1.4e-09 Score=95.00 Aligned_cols=161 Identities=18% Similarity=0.250 Sum_probs=123.3
Q ss_pred cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceee
Q 019068 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (346)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 260 (346)
..++|++++...+.......++...|. ...+..... .....+++++++.|...+.+..++........ .+..+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~-~~~~~~S~~-~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~--~~~~~~~d 163 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGL-RVDARSSSL-EDSLSSKGGLSVHFAGKSQFFAALEESGSKVL--DGNKGEKD 163 (285)
T ss_pred cccccccccccchhhccccccchhhcC-cccchhhhh-ccccccccceeeccccHHHHHHHHHhhhcccc--ccccccCc
Confidence 357889999999888888888888887 555555554 57788999999999999999999987664222 22222211
Q ss_pred ecCCCC-------CCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHH
Q 019068 261 WADPRN-------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (346)
Q Consensus 261 ~~~~~~-------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 333 (346)
...... .........+.++|.||+..++.++|+..|..+|.|..++++.+..++..+|||+|.|.....+..|
T Consensus 164 l~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 164 LNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 111111 1112223334444999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcccCCCC
Q 019068 334 LKNTEKYELDGDH 346 (346)
Q Consensus 334 l~~lng~~i~gr~ 346 (346)
+.. ++..+.|++
T Consensus 244 ~~~-~~~~~~~~~ 255 (285)
T KOG4210|consen 244 LND-QTRSIGGRP 255 (285)
T ss_pred hhc-ccCcccCcc
Confidence 997 888888763
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=3.4e-09 Score=91.26 Aligned_cols=75 Identities=35% Similarity=0.577 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHH-hcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK-LNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-l~~~~~~g~~l~v~~~ 178 (346)
...||||++|...+++.+|+.+|.+||.|.++++... +++|||+|.+..+|..|... ++...|.|++|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4668999999999999999999999999999999874 67999999999999998864 5667789999999999
Q ss_pred Cc
Q 019068 179 QA 180 (346)
Q Consensus 179 ~~ 180 (346)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 123
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.90 E-value=7.1e-09 Score=74.74 Aligned_cols=69 Identities=20% Similarity=0.360 Sum_probs=63.5
Q ss_pred eEEEEcCCCcccCHHHHHHHhhcc--CcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
+||.|+|||...|.++|.+++... |...-+.+|.|..++.+.|||||.|.+++.|.+-.+.++|++|..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 799999999999999999998754 667789999999999999999999999999999999999999864
No 124
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.88 E-value=2.3e-09 Score=90.11 Aligned_cols=76 Identities=33% Similarity=0.551 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
...+++|+|+||.+.++..+|+..|.+||+|..+.|+++ |+||.|.-.++|..|++.|++..|.|++++|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 346789999999999999999999999999999999854 899999999999999999999999999999988
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 7643
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.87 E-value=3.4e-09 Score=87.48 Aligned_cols=159 Identities=19% Similarity=0.228 Sum_probs=108.6
Q ss_pred cceecCCCCCCCHHH-H--HHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 183 RLFIGNIPRNWGSED-L--QKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 183 ~l~v~~l~~~~~~~~-l--~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
.++++++...+..+- | ...|..+-. +....++++ ..+.-++++|+.|.....-.++-..-+++ +++...++.
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~-L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~VR~ 172 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPS-LVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPVRL 172 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchh-hhhhhhhhc--CCCccCcccccCcchhhhhhhhccccccc--cccCcceee
Confidence 445555555444433 2 344444433 444445554 55666888988887665554444333332 123333333
Q ss_pred eecCCCCCCC--cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh
Q 019068 260 SWADPRNVDS--SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (346)
Q Consensus 260 ~~~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 337 (346)
.....--.++ .-.....+||.+-|...++.+-|...|.+|-.....++++++.++.++||+||.|.+..++..|+..|
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 3222211111 22333479999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCC
Q 019068 338 EKYELDGDH 346 (346)
Q Consensus 338 ng~~i~gr~ 346 (346)
||..++.|+
T Consensus 253 ~gkyVgsrp 261 (290)
T KOG0226|consen 253 NGKYVGSRP 261 (290)
T ss_pred cccccccch
Confidence 999999874
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.87 E-value=3.4e-09 Score=92.64 Aligned_cols=164 Identities=19% Similarity=0.329 Sum_probs=134.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..+++|++++.+++...++..++..+|.+....+........++|++++.|...+.+..|+.........+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57789999999999999999999999999888888877789999999999999999999996433334444433322211
Q ss_pred ----------------ccccce-ecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHH
Q 019068 180 ----------------AKYRLF-IGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242 (346)
Q Consensus 180 ----------------~~~~l~-v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 242 (346)
+..++| +++++..++..+|+.+|..+|. |..++++.. ..++..+||+|+.|.....+..++
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~-i~~~r~~~~-~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGE-ITSVRLPTD-EESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCc-ceeeccCCC-CCccchhhhhhhhhhhchhHHHHh
Confidence 123444 9999999999999999999999 999999988 899999999999999999999888
Q ss_pred HHhcCCcccCCCCCceeeecCCCCCC
Q 019068 243 QKMTNPNFKLGTNAPTVSWADPRNVD 268 (346)
Q Consensus 243 ~~l~~~~~~~~~~~~~v~~~~~~~~~ 268 (346)
.. .. ..+.++++.+.+..+....
T Consensus 245 ~~-~~--~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QT--RSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-cc--CcccCcccccccCCCCccc
Confidence 75 33 3577888888887776544
No 127
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.6e-09 Score=92.00 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=70.5
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++.+.|||..|.+-++.++|.-+|+.||+|.++.++++..++.+-.||||+|.+.+++.+|+=+|+|..|+.|+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 444589999999999999999999999999999999999999998899999999999999999999999999874
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=6.9e-09 Score=90.37 Aligned_cols=144 Identities=23% Similarity=0.291 Sum_probs=110.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHcc----CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE---
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSI----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR--- 174 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~--- 174 (346)
-.|.+++||+++++.++..||..- |....|.+++.+ .|+..|-|||.|...++|+.||.. |...+..|.|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 358899999999999999999742 345667777664 389999999999999999999953 32222222221
Q ss_pred ----------------------------------EeecCccccceecCCCCCCCHHHHHHHHHhhCCCeeE--EEEeeCC
Q 019068 175 ----------------------------------CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG--VELVKDM 218 (346)
Q Consensus 175 ----------------------------------v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~--~~~~~~~ 218 (346)
|-...++.+|-+++||+..+.++|..+|..|-..|.. +.++-+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 2222345678899999999999999999998664444 555544
Q ss_pred CCCCCCccEEEEEeCChhHHHHHHHHhcCCc
Q 019068 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (346)
Q Consensus 219 ~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~ 249 (346)
..|++.|-|||+|.+.+.|..|....+++.
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~~ 348 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKKL 348 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHhh
Confidence 789999999999999999998888777654
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.82 E-value=4.4e-08 Score=70.64 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=67.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHc--cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc----CceeEE
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK----GKKIRC 175 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~l~v 175 (346)
+||+|+|||...+...|.+++.. .|...-+-++.|..++.+.|||||.|.+++.|.+..+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999998866 367778888899999999999999999999999999999999985 334455
Q ss_pred eecC
Q 019068 176 STSQ 179 (346)
Q Consensus 176 ~~~~ 179 (346)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 130
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.80 E-value=8.8e-09 Score=97.30 Aligned_cols=65 Identities=28% Similarity=0.575 Sum_probs=61.9
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
++||||+.|++.+++.+|..+|..||.|.+|.++.. +|+|||.+...++|.+||++|+++.+.++
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k 485 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADK 485 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccce
Confidence 699999999999999999999999999999999877 59999999999999999999999999875
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=8.5e-09 Score=98.93 Aligned_cols=146 Identities=16% Similarity=0.312 Sum_probs=121.4
Q ss_pred ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeee
Q 019068 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (346)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 261 (346)
++||++||+..++..+|+..|..+|. +..|.|-+. ..+....|+||.|.+...+-.+...+.++.+-.+ .+++.+
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~gk-ve~VDiKtP--~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g--~~r~gl 447 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDESGK-VEEVDIKTP--HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG--THRIGL 447 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhhcc-ccccccccC--CCCcccchhhhhhhccccCcccchhhcCCccccC--cccccc
Confidence 78999999999999999999999999 999988776 3455677899999999988888888887654333 444444
Q ss_pred cCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
..+. ...++.+++++|+..+....|...|..||.|..|.+-... -||+|.|.+...|+.|++.|-|+.
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap 515 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAP 515 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCc
Confidence 4332 2223899999999999999999999999999988774442 599999999999999999999999
Q ss_pred cCC
Q 019068 342 LDG 344 (346)
Q Consensus 342 i~g 344 (346)
|+|
T Consensus 516 ~G~ 518 (975)
T KOG0112|consen 516 LGG 518 (975)
T ss_pred CCC
Confidence 987
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=9e-09 Score=94.08 Aligned_cols=72 Identities=32% Similarity=0.482 Sum_probs=65.0
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....+..+|+|-|||.+++.++|..+|+.||.|..|+.-+.+ +|.+||+|-++.+|.+|++.||+..|.|++
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 334456899999999999999999999999999998877775 799999999999999999999999998863
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.74 E-value=1.7e-09 Score=94.30 Aligned_cols=200 Identities=13% Similarity=0.160 Sum_probs=125.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCC---CCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK---DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
...|-|.||.++++.++++.||.-.|.|..+++..+. ........|||.|.+...+..|.. |..+++-++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 3489999999999999999999999999999997742 223456689999999999999985 888888888888766
Q ss_pred cCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCc
Q 019068 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (346)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 257 (346)
+... +-+... +|..++..-.-..++.. .| |.|... ++..-|+..
T Consensus 86 ~~~~-----------~~p~r~--af~~l~~~navprll~p---dg-------~Lp~~~-------------~lt~~nh~p 129 (479)
T KOG4676|consen 86 YGDE-----------VIPDRF--AFVELADQNAVPRLLPP---DG-------VLPGDR-------------PLTKINHSP 129 (479)
T ss_pred cCCC-----------CCccHH--HHHhcCcccccccccCC---CC-------ccCCCC-------------ccccccCCc
Confidence 5321 111111 33433330000000000 00 111110 000000000
Q ss_pred eeeecCCCCCC----CcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHH
Q 019068 258 TVSWADPRNVD----SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (346)
Q Consensus 258 ~v~~~~~~~~~----~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 333 (346)
..-...|...+ .....-.+|++|.+|+..|...++.+.|..||.|...++.-.. ..-++.+.|....+...|
T Consensus 130 ~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 130 NAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred cceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHH
Confidence 00000011000 0111123799999999999999999999999999877765443 235788999998888888
Q ss_pred HHHhcCccc
Q 019068 334 LKNTEKYEL 342 (346)
Q Consensus 334 l~~lng~~i 342 (346)
++ ++|+.+
T Consensus 206 lr-~~gre~ 213 (479)
T KOG4676|consen 206 LR-SHGRER 213 (479)
T ss_pred HH-hcchhh
Confidence 88 666554
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=1.6e-08 Score=92.43 Aligned_cols=71 Identities=23% Similarity=0.392 Sum_probs=66.3
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.+.|+|.+|...+-..+|+.||++||+|+..+++.+..+...+.|+||++.+.++|.+||.+|+...|.||
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 47899999999999999999999999999999998887777788999999999999999999999999887
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=1.5e-08 Score=81.82 Aligned_cols=136 Identities=21% Similarity=0.362 Sum_probs=111.4
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
..++|||+|+...++++-|.++|-+.|+ |..+.|..+ ..+..+ ||||.|.+..+..-|+..+++. .+.+..+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGP-V~kv~ip~~--~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~--~l~~~e~q- 80 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGP-VYKVGIPSG--QDQEQK-FAYVFFPNENSVQLAGQLENGD--DLEEDEEQ- 80 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCc-eEEEeCCCC--ccCCCc-eeeeecccccchhhhhhhcccc--hhccchhh-
Confidence 4579999999999999999999999999 888888776 445555 9999999999999999999883 45454443
Q ss_pred eecCCCCCCCcccccceEEEEcC----CCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHH
Q 019068 260 SWADPRNVDSSGASQVKAVYVKN----LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (346)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 335 (346)
.+++.+| |...++.+.+...|+..|.+..+++..+..+. ++.++|+.+--..+.-.|+.
T Consensus 81 ----------------~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~r-nrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 81 ----------------RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGR-NRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred ----------------cccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCC-ccCccchhhhhhhcCcHHhh
Confidence 3555556 67778999999999999999999999998744 47899999877777777777
Q ss_pred HhcC
Q 019068 336 NTEK 339 (346)
Q Consensus 336 ~lng 339 (346)
..++
T Consensus 144 ~y~~ 147 (267)
T KOG4454|consen 144 LYQG 147 (267)
T ss_pred hhcc
Confidence 6554
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.66 E-value=1.3e-07 Score=64.75 Aligned_cols=70 Identities=26% Similarity=0.455 Sum_probs=48.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHH----ccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQ----SIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~----~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
..|+|.|||.+.....|+.-++ .|| .|..| +.+.|+|.|.+++.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999999888766555 565 66665 25689999999999999999999999999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 88643
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=1.2e-07 Score=80.07 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|+|.|||+.++..+|+++|..||.+..+-+-.++ .|++.|.|-|.|...++|.+|++.+++..+.|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 45789999999999999999999999988888888875 59999999999999999999999999999999999887765
Q ss_pred c
Q 019068 180 A 180 (346)
Q Consensus 180 ~ 180 (346)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 138
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.65 E-value=4.6e-08 Score=80.99 Aligned_cols=73 Identities=32% Similarity=0.416 Sum_probs=63.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCC--------CCCcc----eEEEEecCHHHHHHHHHHhcCcc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS--------SENKG----FAFVTFRNVELASKAIDKLNNTE 167 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--------~~~~g----~afv~f~~~~~a~~a~~~l~~~~ 167 (346)
....||+++||+.+...-|+++|++||.|-.|.+-+...+ |.+.+ -|||+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999998776554 22332 48899999999999999999999
Q ss_pred ccCce
Q 019068 168 FKGKK 172 (346)
Q Consensus 168 ~~g~~ 172 (346)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.64 E-value=9e-08 Score=80.76 Aligned_cols=71 Identities=32% Similarity=0.461 Sum_probs=65.1
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..+|+|.|||+.|+..+|+++|..||.+..+-+-+++.+.. .|.|=|.|...++|.+|++.|||..++|++
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s-~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS-LGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC-CccceeeecchHhHHHHHHHhcCcccCCce
Confidence 37899999999999999999999999888888888876665 799999999999999999999999999974
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.63 E-value=8.2e-08 Score=87.53 Aligned_cols=79 Identities=24% Similarity=0.469 Sum_probs=67.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
..+|||+|||++++..+|+++|++||.|+...|......+...+||||+|.+...+..||. .+...+.|++|.|..-.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 4469999999999999999999999999998887654334445999999999999999997 558889999999976543
No 141
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=7.6e-08 Score=83.11 Aligned_cols=66 Identities=27% Similarity=0.479 Sum_probs=58.7
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHH-hcCcccCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN-TEKYELDGD 345 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~-lng~~i~gr 345 (346)
...||||++|-..+++.+|++.|-+||.|.+|++.... |+|||+|.+..+|..|... +|...|+|+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 35899999998899999999999999999999998884 8999999999999999887 566666664
No 142
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.58 E-value=1.6e-07 Score=76.17 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=56.5
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCC-CCCCCEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
-+||||.+||.++...+|..+|+.|-......|.....+ +..+-+|||+|.+.+.|.+|+..|||.+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD 103 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD 103 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec
Confidence 389999999999999999999999866665544433322 223469999999999999999999999886
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=1.2e-07 Score=80.34 Aligned_cols=79 Identities=25% Similarity=0.433 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..+.+||+|+.+.++.+++...|+.||.|..+.+..++.+|.++||+||+|.+.+.+..++. |++..+.|+.+.|.+-.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 56789999999999999999999999999999999999999999999999999999999997 99999999999997755
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.49 E-value=1.5e-07 Score=77.87 Aligned_cols=83 Identities=16% Similarity=0.373 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.+....+||.+-|...++.+-|-..|++|-.....++++++.||+++||+||.|.+..++..|++.|+|..++.+.|.++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ecC
Q 019068 177 TSQ 179 (346)
Q Consensus 177 ~~~ 179 (346)
.+.
T Consensus 266 kS~ 268 (290)
T KOG0226|consen 266 KSE 268 (290)
T ss_pred hhh
Confidence 554
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.48 E-value=1.5e-07 Score=85.93 Aligned_cols=69 Identities=28% Similarity=0.554 Sum_probs=59.2
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.+|||+|||..++..+|.++|..||.|...+|.....++....||||+|.+..++..||++ +-..|+||
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~ 357 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGR 357 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCe
Confidence 5699999999999999999999999999988887765555458999999999999999995 35555555
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=5.2e-07 Score=84.80 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCC---CCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK---DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
.+..+.|||+||++.++++.|...|..||+|.+++|+.-. ...+.+.||||.|-+..+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567789999999999999999999999999999987532 2235677999999999999999999999999999999
Q ss_pred EeecC
Q 019068 175 CSTSQ 179 (346)
Q Consensus 175 v~~~~ 179 (346)
+.|+.
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98884
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.42 E-value=2.8e-07 Score=78.03 Aligned_cols=71 Identities=27% Similarity=0.360 Sum_probs=67.3
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...+||+|+.+.++.+++...|+.||.|..+.|+.++..+.++||+||+|.+...+..||+ |||..|.|+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~ 171 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPA 171 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccc
Confidence 3799999999999999999999999999999999999998889999999999999999999 9999998873
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.38 E-value=4.5e-08 Score=86.44 Aligned_cols=145 Identities=19% Similarity=0.353 Sum_probs=116.0
Q ss_pred ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeee
Q 019068 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (346)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 261 (346)
+.+|++||.+.++..+|..+|....-+...-.++. .||+||.+.+...|-+++..++++ +.+.|..+.+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGK-VELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee--------cceeeccCCchhhhhhhHHhhchh-hhhcCceeeccc
Confidence 46899999999999999999987644333333333 589999999999999999999885 467888888877
Q ss_pred cCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
.-++...+ +.+-|+|+|...-++.|-.++..||.|..+..+..... ....-|+|.+.+.+..|+.+|||..
T Consensus 73 sv~kkqrs------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 73 SVPKKQRS------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred hhhHHHHh------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 76655443 67999999999999999999999999988755333211 1245679999999999999999988
Q ss_pred cCC
Q 019068 342 LDG 344 (346)
Q Consensus 342 i~g 344 (346)
|..
T Consensus 144 ~en 146 (584)
T KOG2193|consen 144 LEN 146 (584)
T ss_pred hhh
Confidence 764
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.32 E-value=4.4e-06 Score=57.41 Aligned_cols=61 Identities=26% Similarity=0.432 Sum_probs=43.7
Q ss_pred eEEEEcCCCcccCHH----HHHHHhhccCc-EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQD----QLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~----~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.|+|.|||...+.. -|++++..||. |..|. .+.|+|.|.+.+.|.+|+..|+|.-+.|++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~k 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNK 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccce
Confidence 579999999887654 57778889974 76664 368999999999999999999999888864
No 150
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=6.1e-07 Score=74.11 Aligned_cols=62 Identities=29% Similarity=0.548 Sum_probs=57.0
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
..+||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.+..+|..|+..|||..|.|-
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e 63 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGE 63 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--------ecccceeccCchhhhhcccchhcCceecce
Confidence 36999999999999999999999999998877 257999999999999999999999999874
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.24 E-value=2.7e-07 Score=81.63 Aligned_cols=138 Identities=22% Similarity=0.383 Sum_probs=108.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc-ccCceeEEeecCc
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIRCSTSQA 180 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~~~~ 180 (346)
..+|++||.+..+..+|..+|.....-.+-.++ ...||+||.+.+..+|.+|++.++|.. +.|+++.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 358999999999999999999875211111111 247899999999999999999999865 7899999988766
Q ss_pred c----ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcc
Q 019068 181 K----YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250 (346)
Q Consensus 181 ~----~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~ 250 (346)
+ +.+-|+|+|+...++-|..+...+|. +.+|..+.- ....-..-|+|.+.+.+..++.+++++.+
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt----~~etavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNT----DSETAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhcc----chHHHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 4 67899999999999999999999999 877765321 11122334678888999999999988654
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.21 E-value=9.7e-07 Score=73.32 Aligned_cols=71 Identities=18% Similarity=0.411 Sum_probs=62.9
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCC--------CCCCC----EEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG--------QEKNR----IGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~--------~~~~g----~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
..||++|||+.+....|++||+.||.|-.|.+.+.... +.+++ -|+|+|.+...|.++...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 68999999999999999999999999999999887655 22222 3899999999999999999999999
Q ss_pred CCC
Q 019068 344 GDH 346 (346)
Q Consensus 344 gr~ 346 (346)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 985
No 153
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.20 E-value=3.8e-06 Score=72.81 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=63.7
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEE--------EEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++.|||+|||..+|.+++.++|++||.|. .|+|.++..+.. +|=|.+.|--.++...|++.|++..|.|++
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~l-KGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKL-KGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCc-cCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 36699999999999999999999999875 388888887554 899999999999999999999999999873
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.15 E-value=5.8e-06 Score=61.18 Aligned_cols=60 Identities=28% Similarity=0.496 Sum_probs=39.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT 166 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 166 (346)
++.|+|.+++..++.++|+.+|++||.|.+|.+.+. ...|||.|.+.+.|.+|+..+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 357899999999999999999999999999998764 347999999999999999876543
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.08 E-value=1.3e-05 Score=59.34 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=40.4
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCc
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~ 340 (346)
..|.|.+++..++-++|+..|+.||.|..|.+.+.. ..|||.|.+++.|+.|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999999997764 58999999999999999986543
No 156
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.1e-05 Score=74.13 Aligned_cols=70 Identities=29% Similarity=0.400 Sum_probs=60.7
Q ss_pred eEEEEcCCCcccC------HHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVT------QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t------~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.|+|.|+|---. ..-|..+|+++|+|+.+.+|.+..++. +||.|++|.+..+|..|++.|||+.|+-.|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt-kG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT-KGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCe-eeEEEEEecChhhHHHHHHhcccceecccc
Confidence 7899999984321 235778899999999999999998885 999999999999999999999999997654
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.03 E-value=6.3e-06 Score=72.02 Aligned_cols=83 Identities=24% Similarity=0.453 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeE--------EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 171 (346)
...+|||.+||..++...|..+|.++|.|. .|+|-+++.|+.+++-|.|.|.+...|+.|+..+++..+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456899999999999999999999999884 377888899999999999999999999999999999999999
Q ss_pred eeEEeecCccc
Q 019068 172 KIRCSTSQAKY 182 (346)
Q Consensus 172 ~l~v~~~~~~~ 182 (346)
.|.|..+....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887543
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.03 E-value=1.3e-05 Score=69.18 Aligned_cols=81 Identities=20% Similarity=0.466 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCCCCHHH----H--HHHHHccCCeEEEEEeeCCCC-CCCcceE--EEEecCHHHHHHHHHHhcCccccCc
Q 019068 101 GSEVYIGGIPHDASEHD----L--RDFCQSIGEVTEVRIMKGKDS-SENKGFA--FVTFRNVELASKAIDKLNNTEFKGK 171 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~----l--~~~f~~~G~i~~~~~~~~~~~-~~~~g~a--fv~f~~~~~a~~a~~~l~~~~~~g~ 171 (346)
..-+||-+||+.+..++ | .++|.+||.|..|.+-+.-.+ ....+.+ ||+|.+.++|.+||...+|..+.|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 44599999999987666 3 469999999998877554211 1122223 9999999999999999999999999
Q ss_pred eeEEeecCcc
Q 019068 172 KIRCSTSQAK 181 (346)
Q Consensus 172 ~l~v~~~~~~ 181 (346)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987654
No 159
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.98 E-value=9.5e-06 Score=76.58 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=63.5
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCC---CCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
..+.++.|||+||++++++..|...|..||+|.+++|+-.+ .....+.+|||-|-+..+|.+|+..|+|..+-++
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 35667999999999999999999999999999998887544 2233356999999999999999999999877543
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.73 E-value=0.00015 Score=52.84 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=47.9
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEE-eCCCC------CCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVV-VPPAK------PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-i~~~~------~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
+.|.|-+.|.. ....|.+.|++||.|.... +.+.. +......+.-|+|.++.+|.+||+ .||..|+|.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 57888888877 6678999999999998775 21110 011113689999999999999999 999999874
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.72 E-value=5.1e-05 Score=66.46 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=66.8
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEE--------EEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
.....++||.+||..++..+|..+|.+||.|. .|.|.+++.|...||-|.|.|.++..|++|+.-+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 33447999999999999999999999999875 4788889999999999999999999999999999999887
Q ss_pred CC
Q 019068 344 GD 345 (346)
Q Consensus 344 gr 345 (346)
|.
T Consensus 143 gn 144 (351)
T KOG1995|consen 143 GN 144 (351)
T ss_pred CC
Confidence 74
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.67 E-value=0.00015 Score=46.37 Aligned_cols=52 Identities=23% Similarity=0.471 Sum_probs=42.6
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHH
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 334 (346)
+.|-|.+.|.... +.+...|..||.|..+.+... ..+.+|.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5788899886665 455668889999999999733 358999999999999986
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.67 E-value=0.00015 Score=64.94 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=64.7
Q ss_pred CCCCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCC---CCC---CCC-------CC
Q 019068 252 LGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA---KPG---QEK-------NR 318 (346)
Q Consensus 252 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~---~~~---~~~-------~g 318 (346)
++.-.-.|.+..+-.......-+++||.+.|||.+-.-+-|.+||..+|.|..|+|+.- ... ..+ +-
T Consensus 208 vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~ 287 (484)
T KOG1855|consen 208 VSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKE 287 (484)
T ss_pred EccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhh
Confidence 33333344444444444444446699999999998888999999999999999999876 211 111 23
Q ss_pred EEEEEeCCHHHHHHHHHHhcC
Q 019068 319 IGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 319 ~afV~f~~~~~A~~Al~~lng 339 (346)
+|||+|...+.|.+|...||.
T Consensus 288 ~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 288 CALVEYEEVEAARKARELLNP 308 (484)
T ss_pred hhhhhhhhhHHHHHHHHhhch
Confidence 689999999999999997754
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.66 E-value=0.00016 Score=46.25 Aligned_cols=52 Identities=21% Similarity=0.508 Sum_probs=42.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHH
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 160 (346)
+.|-|.+.|+...+ .+..+|.+||.|..+.+. ......||+|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 57889999987764 455599999999998875 23668999999999999985
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.00035 Score=58.46 Aligned_cols=89 Identities=17% Similarity=0.253 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCccccCceeEEeecCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCC
Q 019068 155 LASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234 (346)
Q Consensus 155 ~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~ 234 (346)
-|..|-..|.+....|+.|+|.++-. ..|+|.||+..+.-+.+.+.|+.||+ |...-+.-+ ..++..+-++|.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAK 81 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhc
Confidence 35566667899999999999999998 99999999999999999999999999 877777766 566677788999999
Q ss_pred hhHHHHHHHHhcC
Q 019068 235 HKCAEYSRQKMTN 247 (346)
Q Consensus 235 ~~~a~~a~~~l~~ 247 (346)
...+..|+.....
T Consensus 82 k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 82 KPNARKAARRCRE 94 (275)
T ss_pred chhHHHHHHHhcc
Confidence 9999888887643
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00054 Score=63.49 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=62.8
Q ss_pred CCCCEEEEcCCCCCC--CHHH----HHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc-Cc
Q 019068 99 PHGSEVYIGGIPHDA--SEHD----LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GK 171 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~--~~~~----l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~ 171 (346)
.-...|+|.|+|.-- .-+. |..+|+++|+|..+.+..+..+| .+||.|++|.+..+|..|++.|||..+. .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 345689999999532 2222 56789999999999998887655 9999999999999999999999999985 56
Q ss_pred eeEEee
Q 019068 172 KIRCST 177 (346)
Q Consensus 172 ~l~v~~ 177 (346)
++.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666653
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.48 E-value=0.00028 Score=61.16 Aligned_cols=72 Identities=21% Similarity=0.422 Sum_probs=56.8
Q ss_pred ceEEEEcCCCcccCHHH------HHHHhhccCcEEEEEeCCCCCCCCC-CC-E-EEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 275 VKAVYVKNLPRNVTQDQ------LKKLFEHHGRITKVVVPPAKPGQEK-NR-I-GFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~------L~~~F~~~G~v~~v~i~~~~~~~~~-~g-~-afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.+-+||-+||..+-.++ =-++|.+||.|..|.+-+......+ .+ + +||+|.+.++|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46799999988876655 2468999999999988766522221 22 2 49999999999999999999999998
Q ss_pred C
Q 019068 346 H 346 (346)
Q Consensus 346 ~ 346 (346)
+
T Consensus 194 ~ 194 (480)
T COG5175 194 V 194 (480)
T ss_pred e
Confidence 4
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.32 E-value=0.00048 Score=58.66 Aligned_cols=71 Identities=24% Similarity=0.342 Sum_probs=54.4
Q ss_pred eEEEEcCC--CcccC---HHHHHHHhhccCcEEEEEeCCCCCCCCCC-CEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNL--PRNVT---QDQLKKLFEHHGRITKVVVPPAKPGQEKN-RIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nL--p~~~t---~~~L~~~F~~~G~v~~v~i~~~~~~~~~~-g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.|.++|+ +-.+. +.++.+.|.+||.|..|.|.......... --.||+|...++|.+|+-.|||+.|+||.
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 44666666 34454 35789999999999998877665332221 24799999999999999999999999983
No 169
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.27 E-value=0.0013 Score=50.81 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=52.3
Q ss_pred CCCCEEEEcCCC-----CCCCHH----HHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc
Q 019068 99 PHGSEVYIGGIP-----HDASEH----DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (346)
Q Consensus 99 ~~~~~l~v~nlp-----~~~~~~----~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 169 (346)
+...||.|.=+. ...-.+ +|.+.|..||.+.-+|++.+ .-||+|.+..+|.+|+. ++|..+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 344566666544 112233 56778899999998888754 59999999999999995 9999999
Q ss_pred CceeEEeecCcc
Q 019068 170 GKKIRCSTSQAK 181 (346)
Q Consensus 170 g~~l~v~~~~~~ 181 (346)
|+.|+|+.-.+.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999887654
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.25 E-value=0.00012 Score=61.22 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=46.9
Q ss_pred HHHHHHhh-ccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 290 DQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 290 ~~L~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++|...|. +||.|..+.+.....-.. .|=++|.|...++|++|+..|||.+|+|++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl-~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~p 139 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHL-VGNVYVKFRSEEDAEAALEDLNNRWYNGRP 139 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhh-hhhhhhhcccHHHHHHHHHHHcCccccCCc
Confidence 55666666 899999997776654444 678999999999999999999999999986
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.23 E-value=0.00033 Score=61.03 Aligned_cols=77 Identities=16% Similarity=0.367 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccC--CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.+||+||-|-+|.++|.+.+...| .+..+++..++..|.++|||.|...+.+...+.+..|....|+|+.-.|..+.
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 599999999999999999888877 46778888888899999999999999999999999999999999988886654
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.08 E-value=0.0018 Score=50.17 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=46.9
Q ss_pred eEEEEcCCC-----cccCH----HHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLP-----RNVTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp-----~~~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.||.|+-+. ..... .+|.+.|..||.|.-+|+..+ .-+|+|.+-++|.+|+. ++|.+++|+
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCE
Confidence 577776655 12222 378888999999998888655 48999999999999999 999999997
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.02 E-value=0.0042 Score=42.95 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=42.2
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln 338 (346)
+..+|. .|+.|-..+|.++|++||.| .|.++-+ .-|||.....+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 455555 99999999999999999996 6777666 479999999999999988765
No 174
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0022 Score=59.12 Aligned_cols=63 Identities=29% Similarity=0.351 Sum_probs=59.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-ccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHH
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (346)
...+|||||+||--++..+|..+|. -||.|..+-|=.|++-+-++|-|-|.|.+..+-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 4678999999999999999999998 59999999999998889999999999999999999996
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.98 E-value=0.0024 Score=53.62 Aligned_cols=91 Identities=25% Similarity=0.369 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCcccCCCCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCC
Q 019068 238 AEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317 (346)
Q Consensus 238 a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~ 317 (346)
|..|-..|.+ ....++.++|-|+.. ..|+|.||+..++.+.|.+.|+.||.|....+.-|..... .
T Consensus 7 ae~ak~eLd~--~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~-t 72 (275)
T KOG0115|consen 7 AEIAKRELDG--RFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP-T 72 (275)
T ss_pred HHHHHHhcCC--CCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc-c
Confidence 3444445555 457788999999865 2799999999999999999999999998766665654443 5
Q ss_pred CEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 318 RIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 318 g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
+-++|.|...-.|.+|+..++-.-|
T Consensus 73 ~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 73 REGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred ccchhhhhcchhHHHHHHHhccCcc
Confidence 7899999999999999998744333
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.97 E-value=0.0043 Score=45.23 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=52.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCC-------CCCCCcceEEEEecCHHHHHHHHHHhcCccccCce
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-------DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 172 (346)
..+.|.|=+.|+. .-..|..+|++||.|....-.... ........-.|+|.++.+|.+||. .||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3557888899988 566788999999999777511000 001235578899999999999995 8999998865
Q ss_pred e-EEeecC
Q 019068 173 I-RCSTSQ 179 (346)
Q Consensus 173 l-~v~~~~ 179 (346)
+ -|.++.
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466654
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.94 E-value=0.00084 Score=60.21 Aligned_cols=68 Identities=26% Similarity=0.387 Sum_probs=56.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeC---CC--CCCC--------cceEEEEecCHHHHHHHHHHhcCc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG---KD--SSEN--------KGFAFVTFRNVELASKAIDKLNNT 166 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~---~~--~~~~--------~g~afv~f~~~~~a~~a~~~l~~~ 166 (346)
.++||.+.|||.+-.-+.|..+|..+|.|..|+|+.- +. .+.+ +-+|+|+|...+.|.+|...|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5889999999999999999999999999999999764 11 1222 457999999999999999877544
Q ss_pred c
Q 019068 167 E 167 (346)
Q Consensus 167 ~ 167 (346)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.93 E-value=0.00078 Score=62.81 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=64.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHc-cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc---cCceeE
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIR 174 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~l~ 174 (346)
..++.|+|.||=--.|.-+|+.++.. +|.|...| +++ -+..|||.|.+.++|......|||..| .++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W--mDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW--MDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHH--HHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 35778999999999999999999985 66777763 332 366899999999999999999999998 678899
Q ss_pred EeecCc
Q 019068 175 CSTSQA 180 (346)
Q Consensus 175 v~~~~~ 180 (346)
+.|...
T Consensus 516 adf~~~ 521 (718)
T KOG2416|consen 516 ADFVRA 521 (718)
T ss_pred eeecch
Confidence 988764
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.80 E-value=0.002 Score=56.23 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=64.8
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCc--EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
...++||+||-..+|+++|.+.+...|. +..+++..++.++.+||||+|...+.....+.+..|-.+.|.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 3479999999999999999999998885 66788999999999999999999999999999999998888874
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.62 E-value=0.0015 Score=61.06 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=56.2
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhh-ccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
+....++.|+|.||-.-+|.-+|+.++. .+|.|....|-+. +..|||.|.+.++|...+.+|||.+|
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhcccc
Confidence 4555679999999988899999999999 5666777755444 45799999999999999999999877
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.57 E-value=0.013 Score=40.49 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=41.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 164 (346)
..+..+|+ +|..+...+|.++|+.||.|. |..+.+ ..|||...+.+.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 34556666 999999999999999999884 444433 369999999999999998775
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.47 E-value=0.0026 Score=51.85 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=46.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHc-cCCe---EEEEEeeCCCC--CCCcceEEEEecCHHHHHHHHHHhcCccccCc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQS-IGEV---TEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 171 (346)
....|.|++||+++|++++...++. ++.. .++.-.....+ .....-|||.|.+.+++......++|..|...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4568999999999999999887776 5554 33332222111 12334699999999999999999999888543
No 183
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.27 E-value=0.0074 Score=49.22 Aligned_cols=69 Identities=9% Similarity=0.084 Sum_probs=46.6
Q ss_pred eEEEEcCCCcccCHHHHHHHhhc-cCcE---EEEE--eCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEH-HGRI---TKVV--VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~-~G~v---~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
..|.|++||+.+|++++...+++ ++.. ..+. ............-|||.|.+.+++..-...++|+.|-+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 68999999999999999998877 5554 2332 22222222223468999999999999999999987754
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.23 E-value=0.0027 Score=53.34 Aligned_cols=62 Identities=27% Similarity=0.411 Sum_probs=51.2
Q ss_pred HHHHHHH-ccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 117 DLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 117 ~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
++-..|. +||.|..+.+..+. ...-.|.+||.|...++|.+|+..||+.-+.|+.|....+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3334444 89999999877663 24568899999999999999999999999999999987765
No 185
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.20 E-value=0.0047 Score=54.90 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=55.8
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCC---CCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE---KNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~---~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
..|-|.||.++++.+++..||...|.|..++|.+....-. ....|||.|.+...+..|.+ |.+++|=|+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdr 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDR 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeee
Confidence 4899999999999999999999999999999887542221 23479999999999988877 666665443
No 186
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.18 E-value=0.019 Score=49.17 Aligned_cols=65 Identities=28% Similarity=0.406 Sum_probs=51.3
Q ss_pred HHHHHHHHHccCCeEEEEEeeCCCCC-CCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 115 EHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 115 ~~~l~~~f~~~G~i~~~~~~~~~~~~-~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
+.+++.-+.+||.|..|.|...+.-. ...---||+|...++|.+|+-.|||..|.|+.++..+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45577889999999998887663211 112247999999999999999999999999999876654
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.14 E-value=0.028 Score=36.84 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=45.7
Q ss_pred eEEEEcCCCcccCHHHHHHHhhcc----CcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHH----GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 337 (346)
..|.|+++. .++-++|+.+|..| + ...|.++-|. -|=|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 689999996 58889999999999 5 4688888885 5889999999999999875
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.10 E-value=0.0029 Score=55.35 Aligned_cols=81 Identities=21% Similarity=0.391 Sum_probs=62.3
Q ss_pred CCEEEEcCCCCCCCHHHHH---HHHHccCCeEEEEEeeCCC--CC-CCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 101 GSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKD--SS-ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~~~~~~~~~--~~-~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
.+-+||-+||.....+.+. .+|.+||.|..|.+..+.. .+ ....-+||+|...++|..||..++|....|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4458888999887555543 3999999999999877651 11 1122389999999999999999999999999987
Q ss_pred EeecCcc
Q 019068 175 CSTSQAK 181 (346)
Q Consensus 175 v~~~~~~ 181 (346)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7766544
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.10 E-value=0.076 Score=39.50 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=50.9
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCc-EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
..+.+-..|+.++.+.|..+...+-. |..++|+++...+ +=-+.+.|.+...|..=+..+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pn--rymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPN--RYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCc--eEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 45555556677777788777777654 6788998876432 3357899999999999999999999864
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.09 E-value=0.022 Score=51.81 Aligned_cols=68 Identities=9% Similarity=0.181 Sum_probs=58.4
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCc-EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
++.|+|-.+|..++..+|..++..+-. |.+++|+++...+ +=.++|.|.+..+|..-+..+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 689999999999999999999988765 7899999964332 2357999999999999999999999864
No 191
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.64 E-value=0.0094 Score=54.40 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=66.4
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIPHDA-SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
+.+.|-+.-.|+.+ +..+|..+|.+||.|..|.+-. +.-.|.|+|.+..+|..|. ..++..|.++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~------~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY------SSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC------chhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 34556677777776 6788999999999999988743 3557999999999999999 48999999999999887
Q ss_pred CccccceecCCCCC
Q 019068 179 QAKYRLFIGNIPRN 192 (346)
Q Consensus 179 ~~~~~l~v~~l~~~ 192 (346)
.+.. +.|+|..
T Consensus 444 nps~---~tn~pav 454 (526)
T KOG2135|consen 444 NPSP---VTNIPAV 454 (526)
T ss_pred cCCc---ccCcccC
Confidence 7654 4555543
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.60 E-value=0.091 Score=34.47 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=43.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHcc----CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSI----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 163 (346)
..|+|+|+. +++.++|+.+|..| + ...|..+-+. .|=|.|.+...|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999995 48999999999999 4 3466666653 4889999999999999754
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.31 E-value=0.16 Score=37.78 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=48.7
Q ss_pred CEEEEcCCC-CCCCHHHHHHHHHcc-CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 019068 102 SEVYIGGIP-HDASEHDLRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (346)
Q Consensus 102 ~~l~v~nlp-~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 170 (346)
.+|.+--.| .-++.+.|..+...+ ..|..++|+++. ..++-.+.++|.+...|......+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444444444 445556666666665 357789998874 2356678999999999999999999999864
No 194
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.29 E-value=0.14 Score=39.41 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=53.8
Q ss_pred CCCEEEEcCCCCCCCH-HH---HHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 100 HGSEVYIGGIPHDASE-HD---LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~-~~---l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
.-.||.|+=|..++.. ++ +...++.||+|.+|.+.- +..|.|.|.+..+|-+|+.+++. ..-|..+.+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 4557888877777632 33 455778899999998753 45799999999999999987775 556677776
Q ss_pred eecC
Q 019068 176 STSQ 179 (346)
Q Consensus 176 ~~~~ 179 (346)
.+-+
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 6543
No 195
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.22 E-value=0.022 Score=54.28 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=57.1
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
..++..++||+|+.+.+..+-++.+...||.|.++.... |||..|..+..+..|++.++-..++|.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 344458999999999999999999999999988765432 899999999999999999888887764
No 196
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.13 E-value=0.092 Score=45.40 Aligned_cols=62 Identities=27% Similarity=0.403 Sum_probs=48.3
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.=|-|-+.|.. .-.-|..+|..||.|++...... -.+-.|.|.+.-+|.+||. .||..|+|.
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 34555666543 33568899999999998887622 2499999999999999999 899988874
No 197
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.39 Score=45.42 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHcc----CCeEEEEEeeCCC----------CCC---------------------
Q 019068 98 PPHGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKGKD----------SSE--------------------- 141 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~~~~~~~~~----------~~~--------------------- 141 (346)
....++|-|.|+.|+ +...+|.-+|+.| |.|.+|.|..... +|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345788999999987 6899999999887 6899999855321 121
Q ss_pred ----------------CcceEEEEecCHHHHHHHHHHhcCcccc--CceeEEeec
Q 019068 142 ----------------NKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRCSTS 178 (346)
Q Consensus 142 ----------------~~g~afv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~ 178 (346)
..-||.|+|.+.+.|.+.+..+.|..+. |..|-+++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1127889999999999999999999985 455555554
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.94 E-value=0.16 Score=47.70 Aligned_cols=96 Identities=13% Similarity=0.229 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCccccCceeEEeecCccccceecCCCCCCCHHHHHHHHHhh-CCCeeEEEEeeCCCCCCCCccEEEEE
Q 019068 153 VELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEV-GPGVTGVELVKDMKNSSNNRGFAFIE 231 (346)
Q Consensus 153 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~~i~~~~~~~~~~~~~~~~g~~~v~ 231 (346)
.+-...+|+.+.+..+..+-++|+....++.++++-||.....+.++.+|+.- .+.+.+|.+... .+| ||+
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nW-yIT 218 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNW-YIT 218 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------Cce-EEE
Confidence 44445566667777888888899888888888999999999999999999962 133777777665 333 899
Q ss_pred eCChhHHHHHHHHhcCCcccCCCCC
Q 019068 232 YHNHKCAEYSRQKMTNPNFKLGTNA 256 (346)
Q Consensus 232 f~~~~~a~~a~~~l~~~~~~~~~~~ 256 (346)
|.+..+|+.|.+.|....-...|+.
T Consensus 219 fesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred eecchhHHHHHHHHHHHHHhhcCcc
Confidence 9999999999987765333333433
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.80 E-value=0.2 Score=45.78 Aligned_cols=71 Identities=23% Similarity=0.483 Sum_probs=60.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHcc-CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 170 (346)
+..++.|.|-.+|.-++..+|..|+..+ ..|..++++++. -.++-...|+|.+.++|......+||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3348899999999999999999998875 468999999963 2345568999999999999999999998864
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.59 E-value=0.31 Score=37.48 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=45.8
Q ss_pred eEEEEcCCCccc----CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCc
Q 019068 276 KAVYVKNLPRNV----TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (346)
Q Consensus 276 ~~l~V~nLp~~~----t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~ 340 (346)
.||.|+=|.+.+ +...+...++.||+|.+|.+.- +..|.|.|.+..+|=+|+.+++..
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCC
Confidence 688886665554 4556777789999999998643 357999999999999999988764
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.56 E-value=0.22 Score=40.84 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=46.2
Q ss_pred CHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc--CccccCceeEEeecC
Q 019068 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIRCSTSQ 179 (346)
Q Consensus 114 ~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~ 179 (346)
....|+.+|..|+.+..+.+.+. -+-..|.|.+.+.|.+|...|+ +..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999888877764 5569999999999999999999 999999999998874
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.45 E-value=0.18 Score=47.34 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=56.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHc--cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcC--ccccCceeE
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIR 174 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~ 174 (346)
...|.|.|+.||..+-.++++.+|+. |-++.+|.+-.+. -=||+|.+..+|++|.+.|.. ..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 35678999999999999999999986 7788888886542 369999999999999987764 346676664
Q ss_pred E
Q 019068 175 C 175 (346)
Q Consensus 175 v 175 (346)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 4
No 203
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.90 E-value=0.18 Score=43.02 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=69.5
Q ss_pred cEEEEEeC----ChhHHHHHHHHhcCCcccCCCCCc--eeeecCC-----------------CCCC-CcccccceEEEEc
Q 019068 226 GFAFIEYH----NHKCAEYSRQKMTNPNFKLGTNAP--TVSWADP-----------------RNVD-SSGASQVKAVYVK 281 (346)
Q Consensus 226 g~~~v~f~----~~~~a~~a~~~l~~~~~~~~~~~~--~v~~~~~-----------------~~~~-~~~~~~~~~l~V~ 281 (346)
..-||.|. +....++.++.|.+..+++.|..- .|..+.. +... ......+.||++.
T Consensus 76 nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la 155 (445)
T KOG2891|consen 76 NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLA 155 (445)
T ss_pred ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeec
Confidence 45677774 456667788888888887776532 1211110 0000 0122234799999
Q ss_pred CCCccc------------CHHHHHHHhhccCcEEEEEeCCCC-----CCCCC-----CCE---------EEEEeCCHHHH
Q 019068 282 NLPRNV------------TQDQLKKLFEHHGRITKVVVPPAK-----PGQEK-----NRI---------GFVHFAERSSA 330 (346)
Q Consensus 282 nLp~~~------------t~~~L~~~F~~~G~v~~v~i~~~~-----~~~~~-----~g~---------afV~f~~~~~A 330 (346)
+||-.| ++.-|+..|..||.|..|.||.-. .++.. +|| |||+|-.--.-
T Consensus 156 ~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgf 235 (445)
T KOG2891|consen 156 GIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGF 235 (445)
T ss_pred CCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhH
Confidence 999765 467899999999999998887433 22222 233 24555544455
Q ss_pred HHHHHHhcCccc
Q 019068 331 MKALKNTEKYEL 342 (346)
Q Consensus 331 ~~Al~~lng~~i 342 (346)
..|+..|.|.++
T Consensus 236 a~amdalr~~k~ 247 (445)
T KOG2891|consen 236 AQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhcchH
Confidence 556666666554
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.49 E-value=0.55 Score=40.78 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=53.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCce-eEEeecC
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK-IRCSTSQ 179 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-l~v~~~~ 179 (346)
=|-|-++|+... .-|..+|.+||.|..... +.+-.+-+|.|.+.-+|.+||. .+|..|.|.. |-|..|.
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 477778887643 467789999999977654 3456689999999999999995 8999998854 4566654
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.88 E-value=0.32 Score=39.87 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=41.3
Q ss_pred CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc--CcccCCC
Q 019068 288 TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGD 345 (346)
Q Consensus 288 t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln--g~~i~gr 345 (346)
....|+.+|..|+.+..+..++.- +-..|.|.+.+.|.+|...|+ +..|.|.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~ 61 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGK 61 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCC
Confidence 457899999999998887766664 569999999999999999999 8888874
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.73 E-value=0.14 Score=45.14 Aligned_cols=71 Identities=20% Similarity=0.417 Sum_probs=53.6
Q ss_pred eEEEEcCCCcccCHHHH---HHHhhccCcEEEEEeCCCCC--CCCC-CCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQL---KKLFEHHGRITKVVVPPAKP--GQEK-NRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L---~~~F~~~G~v~~v~i~~~~~--~~~~-~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+-+||-+|+..+-.+.+ ...|..||.|..|.+..+.. .... ---++|+|...++|..||...+|..++||.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 56778888866644443 34689999999999888762 1110 113799999999999999999999998873
No 207
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.45 E-value=0.077 Score=54.02 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=3.4
Q ss_pred CCCHHHHH
Q 019068 112 DASEHDLR 119 (346)
Q Consensus 112 ~~~~~~l~ 119 (346)
.++.++++
T Consensus 728 ~mdDe~m~ 735 (784)
T PF04931_consen 728 DMDDEQMM 735 (784)
T ss_pred ccCHHHHH
Confidence 34444433
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.31 E-value=0.17 Score=49.87 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=60.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc--cCceeEEeecCc
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--KGKKIRCSTSQA 180 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~ 180 (346)
+.++.|.+-+.+-.-|..+|++||.|.++|..++ ...|.|.|.+.+.|..|+..++|+.+ -|-..+|..+..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4566677778888889999999999999998776 44799999999999999999999876 577788877753
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.18 E-value=0.2 Score=35.47 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=44.0
Q ss_pred EEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCC-----cccccceEEEEcCCCcccCHHHHHHHh
Q 019068 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS-----SGASQVKAVYVKNLPRNVTQDQLKKLF 296 (346)
Q Consensus 228 ~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~l~V~nLp~~~t~~~L~~~F 296 (346)
|.|+|.....|++.++.-. ..+.+++..+.+.......... ......++|.|.|||..++++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~-~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKK-HPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCE-EEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 5789999999988776433 3445555555443332211111 223334899999999999999988754
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.50 E-value=2 Score=28.66 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 112 DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 112 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
.++-++|+..++.|+- .+|..++ | --||.|.+..+|.+|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5688999999999973 3344432 2 2589999999999999999999988877654
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.98 E-value=0.15 Score=50.23 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=50.7
Q ss_pred EEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
+..+.|.+-..+..-|.-+|..||.|.+++.+++- ..|.|.|.+.+.|..|+.+|+|+.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkev 359 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEV 359 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcc
Confidence 34445555566778999999999999999998885 5799999999999999999999765
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.92 E-value=0.24 Score=47.48 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=62.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+...+|||+|+...+..+-++..+..||-|.++.... |||..|........|+..++...+.|+.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567999999999999999999999999988776543 899999999999999999999999998887754
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.15 E-value=0.21 Score=46.01 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=54.5
Q ss_pred ccccceEEEEcCCCccc-CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 271 GASQVKAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
...+.+.|-+.-.|..+ +.++|-..|.+||.|..|.+-... --|.|+|.+..+|-.|.. ..+..|+||
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr 436 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNR 436 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCc
Confidence 34444778888888766 678999999999999999885552 359999999999988888 777777776
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.13 E-value=2.7 Score=28.75 Aligned_cols=59 Identities=24% Similarity=0.427 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHccCC-----eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 111 HDASEHDLRDFCQSIGE-----VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 111 ~~~~~~~l~~~f~~~G~-----i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..+++.+|..++...+. |-.|.+. ..|+||+-... .|..++..|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788899998887644 4566664 34799998754 788889999999999999999764
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.13 E-value=0.99 Score=32.00 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=40.0
Q ss_pred EEEEecCHHHHHHHHHHhcCcc--ccCceeEE---------------eecCccccceecCCCCCCCHHHHHHH
Q 019068 146 AFVTFRNVELASKAIDKLNNTE--FKGKKIRC---------------STSQAKYRLFIGNIPRNWGSEDLQKV 201 (346)
Q Consensus 146 afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v---------------~~~~~~~~l~v~~l~~~~~~~~l~~~ 201 (346)
|.|+|.....|.+.++ +..+. +.+..+.| ....+++++.+.|||....++.|+..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 6899999999999996 33322 33434333 33446789999999999999988754
No 216
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=88.98 E-value=0.17 Score=51.56 Aligned_cols=8 Identities=13% Similarity=0.248 Sum_probs=3.8
Q ss_pred HHHHHHHc
Q 019068 117 DLRDFCQS 124 (346)
Q Consensus 117 ~l~~~f~~ 124 (346)
.|-++|+.
T Consensus 740 ~La~~Fk~ 747 (784)
T PF04931_consen 740 QLAAIFKE 747 (784)
T ss_pred HHHHHHHH
Confidence 34455544
No 217
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=88.56 E-value=0.43 Score=48.90 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHccC
Q 019068 113 ASEHDLRDFCQSIG 126 (346)
Q Consensus 113 ~~~~~l~~~f~~~G 126 (346)
.+-++|..++..|-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 47788999988774
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.44 E-value=3.3 Score=37.54 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCC-eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHH
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (346)
-.+.|-|.++|.....++|...|..||. -..|.++-+ ..||..|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 3568999999999999999999999974 344554443 369999999999999995
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.65 E-value=6 Score=27.00 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=34.4
Q ss_pred cccCHHHHHHHhhccCc-----EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 285 RNVTQDQLKKLFEHHGR-----ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 285 ~~~t~~~L~~~F~~~G~-----v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..++..+|..++...+. |-.|.|... |+||+-... .|..++..|++..+.||+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~ 68 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKK 68 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS--
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCee
Confidence 35788888888877643 667877444 899998875 699999999999999985
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.57 E-value=3.3 Score=39.48 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=55.8
Q ss_pred ceEEEEcCCCc-ccCHHHHHHHhhcc----CcEEEEEeCCCCCC----------CC------------------------
Q 019068 275 VKAVYVKNLPR-NVTQDQLKKLFEHH----GRITKVVVPPAKPG----------QE------------------------ 315 (346)
Q Consensus 275 ~~~l~V~nLp~-~~t~~~L~~~F~~~----G~v~~v~i~~~~~~----------~~------------------------ 315 (346)
+++|-|.||.. .+...+|.-+|+.| |.|.+|.|.+...| |.
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 47999999985 47888999998865 57999998876532 11
Q ss_pred -------------CCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 316 -------------KNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 316 -------------~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
..=||.|+|.+...|...+..++|..|..
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 11279999999999999999999998864
No 221
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.94 E-value=6.7 Score=26.17 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=39.4
Q ss_pred ccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 286 NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 286 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
.++..+|+..+..|+- ..|. .++ .| =||.|.+..+|.+++...+|..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecC-----CE-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 4788999999999975 3333 343 23 3899999999999999999987754
No 222
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=77.21 E-value=10 Score=38.70 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=24.4
Q ss_pred CCcceEEEEecCHHHHHHHHHHhcCcccc
Q 019068 141 ENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (346)
Q Consensus 141 ~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 169 (346)
.-+||-||+=.-+.++..||+.+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 36999999999999999999877766555
No 223
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=76.51 E-value=5.9 Score=26.54 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=47.7
Q ss_pred HHHHHHHHccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCcc
Q 019068 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (346)
Q Consensus 116 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (346)
.+|++-|+.+| ++..+.-+....++.+...-+|+.....+-.. .++=..++|+++.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46888999999 68888888888777888889999877654444 24456778899998876543
No 224
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=74.89 E-value=6 Score=35.68 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=45.1
Q ss_pred EEEEecCHHHHHHHHHHhcCccccCceeEEeecCccccceecCCCCCCCHHHHHHHHH
Q 019068 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVS 203 (346)
Q Consensus 146 afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 203 (346)
|||.|.+..+|..|++.+.... ++.+.+..|...+.++-.||........++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998554333 4667999999999999999988777777776444
No 225
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.60 E-value=8.4 Score=33.68 Aligned_cols=62 Identities=11% Similarity=0.241 Sum_probs=49.4
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCC-------CCCCCEEEEEeCCHHHHHHH
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-------QEKNRIGFVHFAERSSAMKA 333 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-------~~~~g~afV~f~~~~~A~~A 333 (346)
...++.|...||..+++...+...|-+||+|.+|+++.+... ...+....+.|-+.+.+..-
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 445688999999999999999999999999999999988711 11134678899988876543
No 226
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=71.20 E-value=0.63 Score=43.81 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=54.4
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
..++||++|+++..+-++|..+|..+--+..+-+........-..+++|+|.---...-|+-+|||..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3589999999999999999999999877777666554433333457899998777777777788887654
No 227
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=70.94 E-value=14 Score=27.41 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc--ccCceeEEeecCccccce
Q 019068 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIRCSTSQAKYRLF 185 (346)
Q Consensus 108 nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~~~l~ 185 (346)
-||+-++ .|..+|..=|+|.+|..+..-.+ ..|+-.++|.. +.|. |++...+....+.
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPASVR 69 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCcccEE
Confidence 3666554 58889999999999877654211 12444566643 4555 6776666556666
Q ss_pred ecCC---------CCCCCHHHHHHHHHhhC--CCeeEEEEeeCCCCCCCCccEEEEEeCCh
Q 019068 186 IGNI---------PRNWGSEDLQKVVSEVG--PGVTGVELVKDMKNSSNNRGFAFIEYHNH 235 (346)
Q Consensus 186 v~~l---------~~~~~~~~l~~~f~~~g--~~i~~~~~~~~~~~~~~~~g~~~v~f~~~ 235 (346)
+.+. |..++..+++++|+.-- .+|.+-.+.++ .....+-..||..|...
T Consensus 70 i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rd-GLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 70 IQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRD-GLPEGSYRICFRLFNAT 129 (145)
T ss_pred EecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhc-CCCCCceEEEEEEeccc
Confidence 6543 45679999999998631 12554455555 33444566788888665
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.72 E-value=2.8 Score=31.58 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=31.2
Q ss_pred eEEEEcCCCccc---------CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCC-HHHHHHHHH
Q 019068 276 KAVYVKNLPRNV---------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE-RSSAMKALK 335 (346)
Q Consensus 276 ~~l~V~nLp~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~Al~ 335 (346)
-++.|-|+|... +...|.+.|+.|..+ .++.+.+..+ +.|+++|.|.+ ...-..|++
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~g--h~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQG--HTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTE--EEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCC--CcEEEEEEECCChHHHHHHHH
Confidence 367788886543 567899999999875 4656555543 35899999985 444445554
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.60 E-value=19 Score=31.36 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=36.9
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcE-EEEEeCCCCCCCCCCCEEEEEeCCH
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAER 327 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~ 327 (346)
..-|+++|||.++-..+|+..+.+-|.+ .++.+.-. .|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~------~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGH------FGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecC------CcceeEecCCc
Confidence 4679999999999999999999998764 35555222 57899999753
No 230
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.42 E-value=3.1 Score=33.51 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=49.7
Q ss_pred eEEEEcCCCcccC-----HHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVT-----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t-----~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.++++.+++..+. ......+|..|......++.+. .++.-|-|.++..|..|...++++.|.|+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 5678888876552 2355667888877766666665 36788999999999999999999999886
No 231
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.99 E-value=12 Score=25.12 Aligned_cols=63 Identities=10% Similarity=0.271 Sum_probs=47.1
Q ss_pred HHHHHHHHccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCcc
Q 019068 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (346)
Q Consensus 116 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (346)
++|.+-|...| .|..+.-+..+.++.+...-||++....+...++ +=..+.|+.+.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46788888888 5788887777767778888999998776644433 446788889998877644
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.83 E-value=6.4 Score=34.11 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=36.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHH
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~ 154 (346)
..-|+|+|||.++.-.+|+..+.+.|-+- .++.. ..+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCcc
Confidence 34599999999999999999999877542 22222 125778999997643
No 233
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=67.84 E-value=0.77 Score=43.26 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
..++||++|++++++-.+|..+++.+--+..+.+.....-.....++||.|+-.-...-|+-+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 35679999999999999999999998666555554432223456689999988777777777788776654433
No 234
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=66.79 E-value=5.7 Score=32.06 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=54.8
Q ss_pred CCEEEEcCCCCCCC-----HHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCc-eeE
Q 019068 101 GSEVYIGGIPHDAS-----EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KIR 174 (346)
Q Consensus 101 ~~~l~v~nlp~~~~-----~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~ 174 (346)
.+++.+.+|+..+- .....++|.+|-......+++ +.+..-|.|.+++.|..|...+++..+.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 34577888876552 223466788777665555544 456678999999999999999999999888 777
Q ss_pred EeecCcc
Q 019068 175 CSTSQAK 181 (346)
Q Consensus 175 v~~~~~~ 181 (346)
.-.+++.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7777654
No 235
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=66.17 E-value=15 Score=32.11 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=91.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCC-------CCCCcceEEEEecCHHHHHHHHH----Hhc--Cc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD-------SSENKGFAFVTFRNVELASKAID----KLN--NT 166 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~-------~~~~~g~afv~f~~~~~a~~a~~----~l~--~~ 166 (346)
..|.|...|+...++--.+...|-+||+|++|.++.+.. .........+.|-+.+.|.-... .|. ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998751 12334578899999998876553 232 12
Q ss_pred cccCceeEEeecC--------------------------------ccccceecCCCCCCCHHHHHH---HHHhhC---CC
Q 019068 167 EFKGKKIRCSTSQ--------------------------------AKYRLFIGNIPRNWGSEDLQK---VVSEVG---PG 208 (346)
Q Consensus 167 ~~~g~~l~v~~~~--------------------------------~~~~l~v~~l~~~~~~~~l~~---~f~~~g---~~ 208 (346)
.+....|.+.+.. ..+.|+|.=-.+...++-+.. +...-+ .+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEE
Confidence 3445555554432 112333322111112222222 222222 14
Q ss_pred eeEEEEeeC-CCCCCCCccEEEEEeCChhHHHHHHHHhcCC
Q 019068 209 VTGVELVKD-MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (346)
Q Consensus 209 i~~~~~~~~-~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 248 (346)
+..+.++.- .+...-++.||.+.|-+..=|-..+..++..
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 666666543 2344567889999999988887777766643
No 236
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=62.33 E-value=22 Score=23.32 Aligned_cols=17 Identities=24% Similarity=0.622 Sum_probs=13.6
Q ss_pred HHHHHHHHccCCeEEEE
Q 019068 116 HDLRDFCQSIGEVTEVR 132 (346)
Q Consensus 116 ~~l~~~f~~~G~i~~~~ 132 (346)
.+|+++|+..|.|.-+-
T Consensus 9 ~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLY 25 (62)
T ss_pred HHHHHHHHhcCcEEEEE
Confidence 57999999999985443
No 237
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.61 E-value=34 Score=31.33 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=46.3
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCc-EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHH
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 336 (346)
.+.|-|.+.|...--++|...|+.|+. =-.|.++-+. .||..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 489999999998888899999999975 2367777664 799999999999999984
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.73 E-value=9.1 Score=28.81 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=29.7
Q ss_pred EEEEcCCCCC---------CCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHH-HHHHHH
Q 019068 103 EVYIGGIPHD---------ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE-LASKAI 160 (346)
Q Consensus 103 ~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~-~a~~a~ 160 (346)
++.|-|+|.. .+...|+..|+.|.++. ++.+.++ ..+.|++.|.|.+.- .-..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 4566677543 35678999999999885 5555554 357899999997643 344444
No 239
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=59.07 E-value=4.7 Score=39.64 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=17.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 319 IGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 319 ~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
-.||.--+.++=..|+..|-.-.+.|.
T Consensus 623 ~IFcsImsaeDyiDAFEklLkL~LK~~ 649 (822)
T KOG2141|consen 623 AIFCSIMSAEDYIDAFEKLLKLSLKGK 649 (822)
T ss_pred hheeeeecchHHHHHHHHHHhccCCCc
Confidence 457777777777777777655555553
No 240
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=57.20 E-value=7.8 Score=35.03 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=3.1
Q ss_pred CHHHHH
Q 019068 114 SEHDLR 119 (346)
Q Consensus 114 ~~~~l~ 119 (346)
|++++.
T Consensus 191 T~eDF~ 196 (324)
T PF05285_consen 191 TPEDFA 196 (324)
T ss_pred CHHHHH
Confidence 555544
No 241
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=55.10 E-value=5.8 Score=36.15 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=47.5
Q ss_pred eEEEEcCCCcccC--------HHHHHHHhhc--cCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHH
Q 019068 276 KAVYVKNLPRNVT--------QDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (346)
Q Consensus 276 ~~l~V~nLp~~~t--------~~~L~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 335 (346)
+.+|+.+.+...+ .+++...|.+ .+++..|+..++......+|-.|++|...+.|++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 5677766665443 4599999999 6677788888888677778999999999999998874
No 242
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=54.63 E-value=12 Score=29.46 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHc-cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCcc---------
Q 019068 112 DASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK--------- 181 (346)
Q Consensus 112 ~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~--------- 181 (346)
..+-..|...+.+ ++....+.+..- ..++..+.|.+.+++.+++. .....+.|..+.+..-.+.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccccee
Confidence 3566677776655 344334444332 36789999999999999995 5566677777766544321
Q ss_pred ---ccceecCCCCC-CCHHHHHHHHHhhCCCeeEEEE
Q 019068 182 ---YRLFIGNIPRN-WGSEDLQKVVSEVGPGVTGVEL 214 (346)
Q Consensus 182 ---~~l~v~~l~~~-~~~~~l~~~f~~~g~~i~~~~~ 214 (346)
--+-|.|||.. .+++-++.+.+.+|. +..+..
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~-~i~vD~ 137 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE-PIEVDE 137 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC-eEEEEc
Confidence 12567899987 578889999999999 555544
No 243
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=52.50 E-value=66 Score=22.61 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=41.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHc-cC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHH
Q 019068 104 VYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (346)
Q Consensus 104 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (346)
-|.=-.+..++..+|+..+.. || .|.+|+...-+ ....-|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 344456789999999999988 66 57777776653 2455799999998888877643
No 244
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.20 E-value=4.7 Score=37.10 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=48.6
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 337 (346)
...|+..||...+..++.-+|..||.|..+.+.+...++...-.+||+-.+. +|..+++.+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~ 64 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQ 64 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHH
Confidence 3567888999999999999999999999999988888887777888887653 344454443
No 245
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=51.96 E-value=8.7 Score=37.88 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=8.0
Q ss_pred CCcccCHHHHHHHh
Q 019068 283 LPRNVTQDQLKKLF 296 (346)
Q Consensus 283 Lp~~~t~~~L~~~F 296 (346)
+|..+|.++|..+=
T Consensus 552 ~~l~vTledll~ae 565 (822)
T KOG2141|consen 552 LPLSVTLEDLLHAE 565 (822)
T ss_pred ccccccHHHhhChH
Confidence 45556666665553
No 246
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=50.83 E-value=7 Score=38.78 Aligned_cols=8 Identities=13% Similarity=0.077 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 019068 236 KCAEYSRQ 243 (346)
Q Consensus 236 ~~a~~a~~ 243 (346)
.++..|+.
T Consensus 402 ~D~v~al~ 409 (622)
T PF02724_consen 402 SDVVYALT 409 (622)
T ss_pred HHHHHHHH
Confidence 33333333
No 247
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=49.96 E-value=26 Score=28.39 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=37.1
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCC-CCCCCEEEEEeCCHHHHHHHHHH
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKN 336 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~Al~~ 336 (346)
++++.. |.....++|.+.-+ |.+..|.+.+..+. ..-+|-.||+|.+.++|.+.+..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 566666 33344445555545 67777776655444 12368899999999999887653
No 248
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=49.44 E-value=19 Score=24.38 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=23.6
Q ss_pred CEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 318 RIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 318 g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.+.+|.|.|..+|.+|-+.|....|.+|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3789999999999999999887766543
No 249
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=47.96 E-value=15 Score=31.12 Aligned_cols=32 Identities=19% Similarity=0.500 Sum_probs=27.6
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEE
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV 305 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v 305 (346)
...+||+-|+|..+|++-|..+.+.+|.+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34899999999999999999999999875443
No 250
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.81 E-value=70 Score=22.48 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=38.3
Q ss_pred CCCcccCHHHHHHHhhc-cC-cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh
Q 019068 282 NLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (346)
Q Consensus 282 nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 337 (346)
-++...+..+|++.++. || .|.+|+...-+.+ .--|||++..-..|......+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 35677899999999887 45 3677766655532 236999999988888876543
No 251
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=47.45 E-value=80 Score=21.77 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=39.2
Q ss_pred EEEcCCCcccCHHHHHHHhhc-cC-cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHH
Q 019068 278 VYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (346)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 336 (346)
-|+-.++...+..+|+..++. || .|..|+...-+.+ .--|||++..-+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ceEEEEEECCCCcHHHHHHh
Confidence 344456778999999998887 45 3666665555432 23699999988888776554
No 252
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=47.18 E-value=18 Score=30.58 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=30.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEE
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 132 (346)
......++|+-|+|..++++-|..+.+++|-+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 344677899999999999999999999999665444
No 253
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=46.73 E-value=27 Score=31.83 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=49.5
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCc-EEEEEeCCCCCCC--CCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQ--EKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
..+.|++||..++..+|.+-..++-. |....+.+...+. ...+.|+|.|....+...-...++|+.|-.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 68999999999999999998888643 3333443222111 124578999999999877777788887643
No 254
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=46.51 E-value=42 Score=23.51 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=25.5
Q ss_pred cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 301 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
.|.++..+..- +||.||+=.+..++..|++.+.+..
T Consensus 33 ~I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSL-----KGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTS-----TSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCC-----ceEEEEEeCCHHHHHHHHhccccee
Confidence 36677666553 8999999999999999998776643
No 255
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=45.92 E-value=11 Score=37.63 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=6.4
Q ss_pred EcCCCCCCCHHHHHHH
Q 019068 106 IGGIPHDASEHDLRDF 121 (346)
Q Consensus 106 v~nlp~~~~~~~l~~~ 121 (346)
+..+|--+..++...+
T Consensus 960 ~~d~pvFAsaeey~hl 975 (988)
T KOG2038|consen 960 LNDSPVFASAEEYAHL 975 (988)
T ss_pred cccchhhhhHHHHHHH
Confidence 3444433444443333
No 256
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=44.87 E-value=22 Score=37.57 Aligned_cols=9 Identities=11% Similarity=-0.186 Sum_probs=4.3
Q ss_pred eEEEEcCCC
Q 019068 276 KAVYVKNLP 284 (346)
Q Consensus 276 ~~l~V~nLp 284 (346)
.+|.|+.++
T Consensus 1615 ArLvvG~~~ 1623 (1640)
T KOG0262|consen 1615 ARLVVGLPV 1623 (1640)
T ss_pred ceeEecccc
Confidence 345555444
No 257
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.04 E-value=26 Score=31.93 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=48.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-eEEEEEeeCCCC--CCCcceEEEEecCHHHHHHHHHHhcCcccc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 169 (346)
-..|.|.+||+.++..+|.+....+-. +....+.....+ ..-.+.|||.|.+.++.......++|..+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 456899999999999998777666532 334444322111 123567999999999988888888888763
No 258
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=44.01 E-value=10 Score=34.32 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=4.4
Q ss_pred CCCHHHHHHH
Q 019068 192 NWGSEDLQKV 201 (346)
Q Consensus 192 ~~~~~~l~~~ 201 (346)
.++..+|..+
T Consensus 230 ~v~~~dIe~~ 239 (324)
T PF05285_consen 230 LVDPSDIEGF 239 (324)
T ss_pred cCCHHHHHhH
Confidence 3444444433
No 259
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=43.26 E-value=27 Score=27.26 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=57.0
Q ss_pred ccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCCcc--cccceEEEEcCCCcc-cCHHHHHHHhhccCc
Q 019068 225 RGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG--ASQVKAVYVKNLPRN-VTQDQLKKLFEHHGR 301 (346)
Q Consensus 225 ~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~ 301 (346)
.++..+.|.+.+++.+++. ..+....+..+.+..-.+....... ....-=|.|.|||.. ++++-|+.+.+.+|.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~ 131 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGE 131 (153)
T ss_pred CCeEEEEEEeccceeEEEe---cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCC
Confidence 5788899999988877654 3444556666655444433222211 112244778999976 689999999999999
Q ss_pred EEEEEeCCCC
Q 019068 302 ITKVVVPPAK 311 (346)
Q Consensus 302 v~~v~i~~~~ 311 (346)
+..+......
T Consensus 132 ~i~vD~~t~~ 141 (153)
T PF14111_consen 132 PIEVDENTLK 141 (153)
T ss_pred eEEEEcCCCC
Confidence 9988775554
No 260
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.49 E-value=1.1e+02 Score=21.06 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=41.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHc-cC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHH
Q 019068 104 VYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (346)
Q Consensus 104 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 162 (346)
-|+=.++.+++..+|+..+.+ || .|..|+...-+ ....-|||.+.....|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 455567889999999999988 66 57777766543 2455799999888887766543
No 261
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=41.81 E-value=24 Score=37.35 Aligned_cols=11 Identities=0% Similarity=0.178 Sum_probs=5.6
Q ss_pred cCHHHHHHHhh
Q 019068 287 VTQDQLKKLFE 297 (346)
Q Consensus 287 ~t~~~L~~~F~ 297 (346)
+|.+.-.+++.
T Consensus 1589 MsFETt~~Fl~ 1599 (1640)
T KOG0262|consen 1589 MSFETTCQFLK 1599 (1640)
T ss_pred hhHHHHHHHHH
Confidence 45555555554
No 262
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=39.32 E-value=13 Score=34.01 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=51.4
Q ss_pred CCCEEEEcCCCCCCCHH--------HHHHHHHc--cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHH
Q 019068 100 HGSEVYIGGIPHDASEH--------DLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~--------~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 161 (346)
..+.+|+.+++...... ++...|.. .+.+..++..++.....++|..|++|+....|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34568888887666554 89999998 6888889988887677889999999999999999884
No 263
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=39.05 E-value=1.2e+02 Score=20.43 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=24.0
Q ss_pred ceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 144 g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
.+.+|.|.|..+|.+|-+.|....+.++-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 478999999999999999887766654443
No 264
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.31 E-value=74 Score=30.67 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=43.8
Q ss_pred EEEcCCCccc---CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 278 VYVKNLPRNV---TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 278 l~V~nLp~~~---t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
=+|+||+.-. ....+..+-.+||+|-.+++-.. -.|.-.+.+.|..|+. -+|..+.||+
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~-~~d~~fa~Rp 96 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLV-KQDLEFADRP 96 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHH-hCCccccCCC
Confidence 3567776322 44667777779999999998222 3777888899999998 7788888885
No 265
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=34.07 E-value=58 Score=26.43 Aligned_cols=56 Identities=27% Similarity=0.303 Sum_probs=37.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCC-CCCcceEEEEecCHHHHHHHHH
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAID 161 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~ 161 (346)
+++|.. |.+...++|..+-+ |.+..+.+.+.... ...+|-.||+|.+.+.|.+++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 356655 34444444554444 78888877665321 2578899999999999999886
No 266
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.50 E-value=7.9 Score=35.71 Aligned_cols=77 Identities=6% Similarity=-0.123 Sum_probs=57.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
...|+..+|...++.++.-+|..||.|.-+...+.-..|...-.+||.-. .+.+..|+.-+.-..++|..+++..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45678889999999999999999999988877666555666667787765 345666666566666677777776654
No 267
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=31.99 E-value=1.5e+02 Score=23.50 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=26.9
Q ss_pred EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 302 v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
|.++.++..- +||.||+....+++..+++.+.|
T Consensus 36 i~~i~vp~~f-----pGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPEL-----KGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCCC-----CcEEEEEEEChHHHHHHHhcCCC
Confidence 6677777664 79999999988888999887765
No 268
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.23 E-value=1.4e+02 Score=18.89 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=41.5
Q ss_pred EEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCH----HHHHHHHHH
Q 019068 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER----SSAMKALKN 336 (346)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~----~~A~~Al~~ 336 (346)
|+.|.||.-.--...|.+.+...-.|.++.+-... +.+-|.|... +....+|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 57888888777888999999998888888886663 6799999854 555555553
No 269
>PRK11901 hypothetical protein; Reviewed
Probab=30.69 E-value=1.2e+02 Score=27.30 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=39.6
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEE--EeCCHHHHHHHHHHhcC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV--HFAERSSAMKALKNTEK 339 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV--~f~~~~~A~~Al~~lng 339 (346)
....||-|-.+ ...+.|..|...++. ..+++.+-...+.. =|+.| .|.+.++|..|+..|--
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~L-~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQNL-SHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcCc-CceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 33467776665 457778888877763 34444444333332 25443 79999999999998643
No 270
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=27.23 E-value=1.4e+02 Score=26.77 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=39.0
Q ss_pred EEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhc
Q 019068 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298 (346)
Q Consensus 228 ~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 298 (346)
|||+|++..+|..+.+.+.... +....+..+... +-|+=.||..+....-++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~APeP----------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAPEP----------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCCCc----------ccccccccCCChHHHHHHHHHHH
Confidence 6999999999999999765522 233344443222 56777888777777777766554
No 271
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=27.22 E-value=1.7e+02 Score=21.95 Aligned_cols=45 Identities=9% Similarity=0.160 Sum_probs=27.9
Q ss_pred ccCHHHHHHHhhccCc-----EEEEEeCCCCCCCCCCCEEEEEeCCHHHHH
Q 019068 286 NVTQDQLKKLFEHHGR-----ITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (346)
Q Consensus 286 ~~t~~~L~~~F~~~G~-----v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 331 (346)
.++.++|++-+..... |.-.-+...-.++.+.|||.| |++.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 4677777777665322 222344444566777788876 77777665
No 272
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=26.49 E-value=24 Score=36.41 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=5.0
Q ss_pred cceEEEEecC
Q 019068 143 KGFAFVTFRN 152 (346)
Q Consensus 143 ~g~afv~f~~ 152 (346)
+.+-.+.|--
T Consensus 931 ~k~y~ltFi~ 940 (1096)
T TIGR00927 931 RKFFVITFLG 940 (1096)
T ss_pred cceeeehHHH
Confidence 3444566643
No 273
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=24.44 E-value=2.5e+02 Score=27.57 Aligned_cols=75 Identities=8% Similarity=0.192 Sum_probs=53.7
Q ss_pred CcceEEEEecCHHHHHHHHHHhcCccccCceeE-E--eecC------------------------ccccceecCCCCCCC
Q 019068 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR-C--STSQ------------------------AKYRLFIGNIPRNWG 194 (346)
Q Consensus 142 ~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~-v--~~~~------------------------~~~~l~v~~l~~~~~ 194 (346)
..--||+++.+..-..-.-..|+...+.+-.|. + ++|. ....+|+.+|+.++.
T Consensus 235 ~Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP 314 (621)
T COG0445 235 PQIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLP 314 (621)
T ss_pred cccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCC
Confidence 344799999999999888888887665432222 1 1221 124688899999998
Q ss_pred HHHHHHHHHhhCCCeeEEEEeeC
Q 019068 195 SEDLQKVVSEVGPGVTGVELVKD 217 (346)
Q Consensus 195 ~~~l~~~f~~~g~~i~~~~~~~~ 217 (346)
.+--.++....-. ..++.+++.
T Consensus 315 ~dVQ~~~irsipG-lEna~i~rp 336 (621)
T COG0445 315 EDVQEQIIRSIPG-LENAEILRP 336 (621)
T ss_pred HHHHHHHHHhCcc-cccceeecc
Confidence 8887888887765 888888876
No 274
>COG5584 Predicted small secreted protein [Function unknown]
Probab=23.10 E-value=1.7e+02 Score=21.04 Aligned_cols=32 Identities=6% Similarity=0.123 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHccCCeEEEEEeeCCCC
Q 019068 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS 139 (346)
Q Consensus 108 nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 139 (346)
|++...--.-+++.|+++|+|..-+|...+.+
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe~ 60 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPEV 60 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEeccc
Confidence 45555555667889999999998888776643
No 275
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=23.07 E-value=76 Score=30.48 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=46.8
Q ss_pred EEcCCCCCCCHHHHHH-HHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 105 YIGGIPHDASEHDLRD-FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 105 ~v~nlp~~~~~~~l~~-~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
-+.++|..+-...+.. +++.++...+-.- .....+++++.|.+...+.+|+..++|..+.+..+++..+.+
T Consensus 29 ~~e~~~~~~~q~~~~k~~~~~~~~~~s~tk-----~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 29 SIEMIPTFIGQKQLNKVLLKILRDVKSKTK-----LPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred ceeccCchhhhhHHHhhhhhhcccccccCC-----CCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 3445555554444444 4443433322211 123467999999999999999999999999988888776554
No 276
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=23.03 E-value=85 Score=22.62 Aligned_cols=20 Identities=15% Similarity=0.386 Sum_probs=16.9
Q ss_pred ceEEEEecCHHHHHHHHHHh
Q 019068 144 GFAFVTFRNVELASKAIDKL 163 (346)
Q Consensus 144 g~afv~f~~~~~a~~a~~~l 163 (346)
-|.|++|.+.+.+.++...+
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 37899999999999988643
No 277
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.81 E-value=48 Score=31.02 Aligned_cols=7 Identities=14% Similarity=0.321 Sum_probs=2.8
Q ss_pred CcccCHH
Q 019068 284 PRNVTQD 290 (346)
Q Consensus 284 p~~~t~~ 290 (346)
|......
T Consensus 390 peifDD~ 396 (483)
T KOG2773|consen 390 PEIFDDS 396 (483)
T ss_pred ccccCcH
Confidence 4444433
No 278
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=22.62 E-value=31 Score=35.67 Aligned_cols=7 Identities=29% Similarity=0.690 Sum_probs=2.6
Q ss_pred EEEcCCC
Q 019068 104 VYIGGIP 110 (346)
Q Consensus 104 l~v~nlp 110 (346)
+||-.+|
T Consensus 907 ~wvl~~P 913 (1096)
T TIGR00927 907 IYLFLLP 913 (1096)
T ss_pred EeEEecc
Confidence 3333333
No 279
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=21.88 E-value=35 Score=33.53 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=5.4
Q ss_pred CCCcccccCCC
Q 019068 22 GSDEKVDFDED 32 (346)
Q Consensus 22 ~~~~~~~~~~~ 32 (346)
..+.++++|+.
T Consensus 865 ~kd~~m~WDDS 875 (952)
T KOG1834|consen 865 QKDGEMDWDDS 875 (952)
T ss_pred ccCCCCCcccc
Confidence 33445555554
No 280
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.77 E-value=37 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=17.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHH
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFC 122 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f 122 (346)
..++++|||+||..+-.+.=+.++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHH
Confidence 368899999999887655533333
No 281
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=21.04 E-value=55 Score=30.78 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=22.3
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCc---E--EEEEeCCCCCCCCCCCEEEEE
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGR---I--TKVVVPPAKPGQEKNRIGFVH 323 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~---v--~~v~i~~~~~~~~~~g~afV~ 323 (346)
+||.|. |-..-+..|+......-+ | .-|-|..+-.-+-.|.+++|.
T Consensus 552 stlsvn--pGnylerHLRaVieeIEtrSpveLlAIGighDvtRyYrravtiVd 602 (620)
T COG4547 552 STLSVN--PGNYLERHLRAVIEEIETRSPVELLAIGIGHDVTRYYRRAVTIVD 602 (620)
T ss_pred cccccC--CchHHHHHHHHHHHHHhcCCchhheeeecccccchhhhhheeEec
Confidence 466654 445556677766654322 2 123333333222224566665
No 282
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.91 E-value=1.2e+02 Score=30.41 Aligned_cols=14 Identities=0% Similarity=0.142 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHccC
Q 019068 113 ASEHDLRDFCQSIG 126 (346)
Q Consensus 113 ~~~~~l~~~f~~~G 126 (346)
.+-+++.+++..+-
T Consensus 396 k~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 396 KNYEEFLALLEKLS 409 (823)
T ss_pred cCHHHHHHHHHccC
Confidence 36778888888764
No 283
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=2.9e+02 Score=25.71 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHcc----CCeEEEEEeeC
Q 019068 100 HGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKG 136 (346)
Q Consensus 100 ~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~~~~~~~ 136 (346)
...+|-|-|+.|+ +...+|...|+.| |+|..|.|...
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 4667999999986 6788899888876 67888888664
No 284
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.51 E-value=39 Score=22.54 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=28.7
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc
Q 019068 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (346)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln 338 (346)
.+|...|..++....+. +=.+|.-|.+..+|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v----------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV----------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh----------hhhhccCCCCHHHHHHHHHHhh
Confidence 68888888766554432 1258999999999998887654
No 285
>smart00457 MACPF membrane-attack complex / perforin.
Probab=20.38 E-value=80 Score=26.02 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=22.8
Q ss_pred EcCCCcccCHHHHHHHhhccCc--EEEEEe
Q 019068 280 VKNLPRNVTQDQLKKLFEHHGR--ITKVVV 307 (346)
Q Consensus 280 V~nLp~~~t~~~L~~~F~~~G~--v~~v~i 307 (346)
+.+||..++......+|..||+ |.++.+
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 4688988999999999999998 445554
No 286
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.27 E-value=3.4e+02 Score=21.36 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=34.9
Q ss_pred CCCcccCHHHHHHHhhc-cCc-EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHH
Q 019068 282 NLPRNVTQDQLKKLFEH-HGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (346)
Q Consensus 282 nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 335 (346)
.+....+..+|++.++. ||. |..|..+..+.+. --|||.+..-.+|.....
T Consensus 88 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~---KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 88 IVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL---KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc---eEEEEEECCCCcHHHHHH
Confidence 34667899999998887 553 6677666555332 259999987777665444
No 287
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=20.12 E-value=1.4e+02 Score=30.36 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=26.5
Q ss_pred CcceEEEEecCHHHHHHHHHHhcCccccCce-eEEeecC
Q 019068 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKK-IRCSTSQ 179 (346)
Q Consensus 142 ~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-l~v~~~~ 179 (346)
..+.|||+|++...|+.|.+..-...+.+.. +.+.++.
T Consensus 356 ~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaP 394 (827)
T COG5594 356 PTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAP 394 (827)
T ss_pred ccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCc
Confidence 3568999999999999999855445554443 4444443
No 288
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=20.01 E-value=2.5e+02 Score=20.67 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=29.2
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHH
Q 019068 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (346)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 335 (346)
-+|..+.+.+| |.+..|..+..++. -||++++.+.+...+++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~--lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENL--LFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCccc--EEEEEEEcChHHHHHHHh
Confidence 46788888888 45555555554443 699999996665555553
No 289
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=20.00 E-value=3e+02 Score=18.81 Aligned_cols=62 Identities=5% Similarity=0.077 Sum_probs=39.5
Q ss_pred EEEcCCCcccCHHHHHHHhhc-------cCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 278 VYVKNLPRNVTQDQLKKLFEH-------HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
|..++||..+|.++|..+-.. +..|..++..-....+ +-|++..=.+.+...++.+.- |...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 567889988999988887653 4345555444333222 346666667888777776643 6654
Done!