Query 019068
Match_columns 346
No_of_seqs 230 out of 2220
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 8.8E-46 3E-50 328.0 24.7 235 99-346 20-255 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.3E-45 7.8E-50 326.6 24.8 243 94-346 34-282 (292)
3 1b7f_A Protein (SXL-lethal pro 100.0 4.8E-33 1.6E-37 226.7 19.1 157 100-344 2-158 (168)
4 3md3_A Nuclear and cytoplasmic 100.0 1.9E-32 6.6E-37 222.5 18.2 158 102-346 1-158 (166)
5 4f02_A Polyadenylate-binding p 100.0 1.5E-31 5.3E-36 226.2 19.0 161 100-266 14-182 (213)
6 1fxl_A Paraneoplastic encephal 100.0 7.8E-31 2.7E-35 213.2 22.1 160 101-262 2-167 (167)
7 3tyt_A Heterogeneous nuclear r 100.0 1.6E-30 5.5E-35 217.9 20.9 188 100-345 3-193 (205)
8 2qfj_A FBP-interacting repress 100.0 2.1E-30 7.2E-35 219.8 21.6 167 100-270 27-210 (216)
9 1fxl_A Paraneoplastic encephal 100.0 9.3E-31 3.2E-35 212.7 18.2 157 181-345 2-158 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 3.3E-30 1.1E-34 211.2 20.5 161 100-263 2-175 (175)
11 1l3k_A Heterogeneous nuclear r 100.0 1.6E-30 5.6E-35 217.1 18.7 167 97-269 9-187 (196)
12 2cjk_A Nuclear polyadenylated 100.0 1.1E-30 3.7E-35 212.5 16.2 159 100-265 2-166 (167)
13 4f02_A Polyadenylate-binding p 100.0 4.3E-31 1.5E-35 223.5 13.9 160 179-346 13-172 (213)
14 2yh0_A Splicing factor U2AF 65 100.0 5.1E-30 1.8E-34 214.4 17.4 172 100-346 3-185 (198)
15 3pgw_A U1-A; protein-RNA compl 100.0 3.4E-29 1.2E-33 221.1 22.3 239 98-346 6-274 (282)
16 2qfj_A FBP-interacting repress 100.0 8.8E-30 3E-34 216.0 17.2 162 181-346 28-196 (216)
17 2cjk_A Nuclear polyadenylated 100.0 1.8E-30 6.3E-35 211.2 11.4 156 180-346 2-157 (167)
18 1fje_B Nucleolin RBD12, protei 100.0 1.8E-30 6.2E-35 212.9 11.4 158 96-346 8-165 (175)
19 1l3k_A Heterogeneous nuclear r 100.0 1.4E-29 4.8E-34 211.4 16.3 161 180-346 12-174 (196)
20 3nmr_A Cugbp ELAV-like family 100.0 8.2E-29 2.8E-33 202.8 18.7 158 181-344 3-163 (175)
21 2adc_A Polypyrimidine tract-bi 100.0 1.8E-28 6.3E-33 209.6 20.8 184 99-346 32-219 (229)
22 1qm9_A Polypyrimidine tract-bi 100.0 1.2E-28 4.3E-33 206.1 18.2 184 100-346 2-188 (198)
23 2g4b_A Splicing factor U2AF 65 100.0 1.3E-28 4.4E-33 201.2 17.6 153 100-263 3-172 (172)
24 2g4b_A Splicing factor U2AF 65 100.0 1.4E-28 4.8E-33 201.0 15.5 152 180-346 3-165 (172)
25 3sde_A Paraspeckle component 1 100.0 7.2E-28 2.5E-32 210.0 18.1 159 99-266 20-180 (261)
26 3smz_A Protein raver-1, ribonu 100.0 9.8E-28 3.3E-32 212.0 19.2 164 99-267 93-266 (284)
27 2ghp_A U4/U6 snRNA-associated 99.9 2.8E-27 9.5E-32 209.9 16.4 161 100-265 116-291 (292)
28 3sde_A Paraspeckle component 1 99.9 1.7E-26 5.9E-31 201.3 14.3 140 180-340 21-160 (261)
29 4f25_A Polyadenylate-binding p 99.9 2.7E-22 9.3E-27 152.1 10.3 97 99-197 3-113 (115)
30 4fxv_A ELAV-like protein 1; RN 99.9 1.6E-21 5.5E-26 143.5 11.4 82 99-180 17-98 (99)
31 2kn4_A Immunoglobulin G-bindin 99.9 3.7E-21 1.3E-25 154.6 14.3 124 223-346 11-141 (158)
32 2lxi_A RNA-binding protein 10; 99.8 1.1E-20 3.8E-25 136.8 6.7 83 101-183 1-85 (91)
33 3s8s_A Histone-lysine N-methyl 99.8 1.2E-19 4.1E-24 136.0 11.5 84 98-181 3-86 (110)
34 2kn4_A Immunoglobulin G-bindin 99.8 4.9E-19 1.7E-23 142.1 15.1 134 130-269 2-154 (158)
35 3lqv_A PRE-mRNA branch site pr 99.8 1.4E-19 4.8E-24 137.3 10.6 106 97-207 4-109 (115)
36 4fxv_A ELAV-like protein 1; RN 99.8 4.9E-20 1.7E-24 135.5 7.6 72 275-346 19-90 (99)
37 2i2y_A Fusion protein consists 99.8 1.8E-19 6.2E-24 143.3 11.3 116 223-346 11-139 (150)
38 2lkz_A RNA-binding protein 5; 99.8 4.8E-20 1.6E-24 134.0 7.3 82 99-180 7-94 (95)
39 3md1_A Nuclear and cytoplasmic 99.8 5.1E-19 1.7E-23 125.9 10.8 81 101-181 1-81 (83)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.2E-19 1.4E-23 127.0 10.3 82 98-179 4-85 (85)
41 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.6E-19 1.6E-23 127.3 10.6 83 99-181 4-86 (87)
42 2x1f_A MRNA 3'-END-processing 99.8 2.9E-19 9.8E-24 130.9 9.5 85 101-185 2-86 (96)
43 2dnz_A Probable RNA-binding pr 99.8 8.6E-19 2.9E-23 128.1 11.6 85 98-182 2-86 (95)
44 1whw_A Hypothetical protein ri 99.8 1E-18 3.4E-23 128.8 11.3 86 98-183 5-90 (99)
45 3p5t_L Cleavage and polyadenyl 99.8 2.2E-19 7.6E-24 129.8 7.0 80 102-181 2-83 (90)
46 3ns6_A Eukaryotic translation 99.8 1.6E-19 5.4E-24 133.2 6.2 82 100-181 5-93 (100)
47 2jrs_A RNA-binding protein 39; 99.8 7.2E-19 2.5E-23 131.5 9.9 85 97-181 22-106 (108)
48 2cqc_A Arginine/serine-rich sp 99.8 1E-18 3.4E-23 127.8 10.4 84 97-180 11-94 (95)
49 2dgs_A DAZ-associated protein 99.8 1.6E-18 5.4E-23 127.7 11.4 85 97-182 6-90 (99)
50 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-18 4.2E-23 127.0 10.6 82 98-179 13-94 (94)
51 3s8s_A Histone-lysine N-methyl 99.8 4.1E-19 1.4E-23 133.0 8.0 73 274-346 5-77 (110)
52 2la6_A RNA-binding protein FUS 99.8 1.7E-18 5.7E-23 127.6 11.0 84 96-179 8-99 (99)
53 2do4_A Squamous cell carcinoma 99.8 2.1E-18 7.2E-23 127.3 11.5 83 98-181 14-96 (100)
54 1x5u_A Splicing factor 3B subu 99.8 1.7E-18 5.9E-23 129.0 11.1 86 97-182 11-96 (105)
55 1x5t_A Splicing factor 3B subu 99.8 9.5E-19 3.3E-23 128.1 9.4 83 99-181 3-86 (96)
56 2cq0_A Eukaryotic translation 99.8 1.1E-18 3.7E-23 129.6 9.7 84 98-181 12-95 (103)
57 1x5s_A Cold-inducible RNA-bind 99.8 1.4E-18 4.9E-23 128.7 10.1 85 97-181 8-92 (102)
58 1p27_B RNA-binding protein 8A; 99.8 1.7E-18 5.7E-23 129.3 10.5 83 99-181 21-103 (106)
59 2dnm_A SRP46 splicing factor; 99.8 1.3E-18 4.6E-23 129.1 9.8 84 98-181 10-93 (103)
60 2dgo_A Cytotoxic granule-assoc 99.8 2.7E-18 9.1E-23 130.2 11.6 85 98-182 12-96 (115)
61 1x4h_A RNA-binding protein 28; 99.8 2.4E-18 8.2E-23 129.5 11.2 85 97-181 11-101 (111)
62 2lkz_A RNA-binding protein 5; 99.8 2.7E-19 9.2E-24 130.0 5.7 71 276-346 10-86 (95)
63 2lxi_A RNA-binding protein 10; 99.8 1.8E-19 6.3E-24 130.3 4.7 71 276-346 2-74 (91)
64 3s7r_A Heterogeneous nuclear r 99.8 3.1E-18 1.1E-22 123.0 11.0 81 97-178 7-87 (87)
65 1s79_A Lupus LA protein; RRM, 99.8 1.3E-18 4.6E-23 128.6 9.2 79 99-179 9-87 (103)
66 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-18 4.3E-23 129.0 9.0 84 98-181 9-92 (102)
67 3ucg_A Polyadenylate-binding p 99.8 2.8E-18 9.7E-23 123.7 10.6 80 101-181 6-85 (89)
68 2cpz_A CUG triplet repeat RNA- 99.8 2.1E-18 7.1E-23 130.7 10.3 84 99-182 23-106 (115)
69 2cpf_A RNA binding motif prote 99.8 1.7E-18 5.9E-23 127.3 9.4 83 99-181 3-88 (98)
70 2cph_A RNA binding motif prote 99.8 3.7E-18 1.3E-22 127.6 11.0 86 98-183 12-99 (107)
71 2div_A TRNA selenocysteine ass 99.8 2.5E-18 8.7E-23 126.6 9.8 84 98-181 6-94 (99)
72 1oo0_B CG8781-PA, drosophila Y 99.8 2.7E-18 9.1E-23 129.1 10.0 83 99-181 24-106 (110)
73 2hvz_A Splicing factor, argini 99.8 1.9E-18 6.7E-23 127.7 9.0 84 102-190 1-100 (101)
74 2lea_A Serine/arginine-rich sp 99.8 1E-18 3.6E-23 136.0 7.8 113 227-346 6-118 (135)
75 2fy1_A RNA-binding motif prote 99.8 4.5E-18 1.5E-22 128.9 11.1 83 98-181 4-86 (116)
76 3ns6_A Eukaryotic translation 99.8 1.1E-18 3.9E-23 128.6 7.5 72 275-346 6-84 (100)
77 2dgp_A Bruno-like 4, RNA bindi 99.8 3.1E-18 1E-22 127.8 10.0 85 98-182 10-97 (106)
78 2kxn_B Transformer-2 protein h 99.8 2.8E-18 9.6E-23 132.4 10.0 86 96-181 41-126 (129)
79 2dnh_A Bruno-like 5, RNA bindi 99.8 5.7E-18 2E-22 126.1 11.4 82 99-181 13-97 (105)
80 4a8x_A RNA-binding protein wit 99.8 2.6E-18 8.7E-23 123.7 9.1 82 100-181 3-85 (88)
81 1x4e_A RNA binding motif, sing 99.8 8.8E-19 3E-23 125.3 6.5 82 98-179 2-83 (85)
82 2ywk_A Putative RNA-binding pr 99.8 4.5E-18 1.6E-22 124.2 10.3 82 98-180 13-94 (95)
83 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.9E-18 1.3E-22 137.7 10.9 84 98-181 69-152 (165)
84 3n9u_C Cleavage and polyadenyl 99.8 3.6E-18 1.2E-22 136.1 10.4 82 100-181 54-137 (156)
85 2d9p_A Polyadenylate-binding p 99.8 4.9E-18 1.7E-22 126.0 10.2 82 98-181 12-93 (103)
86 3ulh_A THO complex subunit 4; 99.7 7.9E-18 2.7E-22 125.8 11.2 82 97-179 25-106 (107)
87 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.2E-18 7.6E-23 123.1 7.7 73 274-346 6-78 (85)
88 1sjq_A Polypyrimidine tract-bi 99.7 4.9E-18 1.7E-22 124.6 9.6 79 97-181 12-92 (105)
89 2mss_A Protein (musashi1); RNA 99.7 1.9E-18 6.5E-23 120.4 7.2 75 103-178 1-75 (75)
90 1s79_A Lupus LA protein; RRM, 99.7 4.3E-18 1.5E-22 125.8 9.3 71 274-346 10-80 (103)
91 2wbr_A GW182, gawky, LD47780P; 99.7 5.5E-18 1.9E-22 118.6 9.3 74 100-179 6-79 (89)
92 2cpe_A RNA-binding protein EWS 99.7 4.9E-18 1.7E-22 128.3 9.8 85 98-182 12-104 (113)
93 2khc_A Testis-specific RNP-typ 99.7 3.7E-18 1.3E-22 130.0 9.2 82 98-179 37-118 (118)
94 2dhg_A TRNA selenocysteine ass 99.7 5.5E-18 1.9E-22 126.0 9.8 83 98-181 6-90 (104)
95 1whw_A Hypothetical protein ri 99.7 7.5E-18 2.6E-22 124.0 10.4 74 273-346 6-79 (99)
96 2dng_A Eukaryotic translation 99.7 6.6E-18 2.3E-22 125.3 10.1 82 98-181 12-93 (103)
97 1p1t_A Cleavage stimulation fa 99.7 3.7E-18 1.3E-22 126.9 8.8 82 100-181 7-88 (104)
98 3r27_A HnRNP L, heterogeneous 99.7 9.6E-18 3.3E-22 121.8 10.6 78 98-181 18-97 (100)
99 2e5h_A Zinc finger CCHC-type a 99.7 5.6E-18 1.9E-22 123.5 9.5 76 271-346 12-87 (94)
100 2dnz_A Probable RNA-binding pr 99.7 8.6E-18 3E-22 122.7 10.5 73 274-346 4-76 (95)
101 2dgv_A HnRNP M, heterogeneous 99.7 9.6E-18 3.3E-22 121.7 10.7 82 98-181 5-86 (92)
102 3q2s_C Cleavage and polyadenyl 99.7 2.7E-18 9.2E-23 145.8 8.9 81 100-180 67-149 (229)
103 1x5u_A Splicing factor 3B subu 99.7 8E-18 2.7E-22 125.3 10.3 76 271-346 11-86 (105)
104 2dnm_A SRP46 splicing factor; 99.7 7.5E-18 2.6E-22 125.0 10.0 75 272-346 10-84 (103)
105 2dh8_A DAZ-associated protein 99.7 4.5E-18 1.5E-22 126.7 8.8 84 98-182 13-96 (105)
106 1wi8_A EIF-4B, eukaryotic tran 99.7 6.8E-18 2.3E-22 125.5 9.7 81 99-181 13-94 (104)
107 2rs2_A Musashi-1, RNA-binding 99.7 7E-18 2.4E-22 126.4 9.9 86 95-181 19-104 (109)
108 4f25_A Polyadenylate-binding p 99.7 4.2E-18 1.4E-22 128.9 8.7 105 181-291 5-113 (115)
109 2cqc_A Arginine/serine-rich sp 99.7 4.3E-18 1.5E-22 124.3 8.5 77 270-346 10-86 (95)
110 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.9E-18 1.3E-22 122.4 8.0 73 274-346 5-77 (87)
111 2cqd_A RNA-binding region cont 99.7 1E-17 3.5E-22 127.1 10.7 82 98-180 14-95 (116)
112 2dgs_A DAZ-associated protein 99.7 1.4E-17 4.9E-22 122.5 11.1 73 273-346 8-80 (99)
113 2x1f_A MRNA 3'-END-processing 99.7 6.1E-18 2.1E-22 123.8 9.0 72 275-346 2-73 (96)
114 3md1_A Nuclear and cytoplasmic 99.7 4.2E-18 1.4E-22 121.1 7.9 71 276-346 2-72 (83)
115 2cqi_A Nucleolysin TIAR; RNA r 99.7 2E-17 6.7E-22 122.7 11.8 82 98-181 12-93 (103)
116 3ex7_B RNA-binding protein 8A; 99.7 8.4E-18 2.9E-22 129.6 10.1 84 98-181 19-102 (126)
117 2i2y_A Fusion protein consists 99.7 1.8E-17 6.1E-22 131.7 12.3 117 140-266 10-149 (150)
118 2dgx_A KIAA0430 protein; RRM d 99.7 1.3E-17 4.4E-22 122.0 10.6 80 99-181 7-90 (96)
119 1x4e_A RNA binding motif, sing 99.7 3E-18 1E-22 122.5 7.0 73 274-346 4-76 (85)
120 2kt5_A RNA and export factor-b 99.7 1.6E-17 5.5E-22 127.5 11.6 85 98-183 32-116 (124)
121 2krb_A Eukaryotic translation 99.7 5.1E-18 1.7E-22 120.1 8.1 68 276-345 2-75 (81)
122 2ek1_A RNA-binding protein 12; 99.7 2.7E-18 9.1E-23 125.5 6.8 82 99-180 13-94 (95)
123 2cq3_A RNA-binding protein 9; 99.7 2.3E-17 7.8E-22 122.4 12.0 83 97-181 11-93 (103)
124 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.7E-18 9.1E-23 120.3 6.4 76 102-178 1-76 (77)
125 1x5s_A Cold-inducible RNA-bind 99.7 1E-17 3.5E-22 124.1 9.8 75 272-346 9-83 (102)
126 1u6f_A Tcubp1, RNA-binding pro 99.7 1.3E-17 4.4E-22 130.8 10.8 84 98-181 39-122 (139)
127 2la6_A RNA-binding protein FUS 99.7 7E-18 2.4E-22 124.2 8.7 77 270-346 8-92 (99)
128 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.5E-18 1.5E-22 137.4 8.3 117 230-346 11-143 (165)
129 3p5t_L Cleavage and polyadenyl 99.7 1.7E-18 5.9E-23 125.1 5.3 71 276-346 2-74 (90)
130 2jrs_A RNA-binding protein 39; 99.7 8.1E-18 2.8E-22 125.8 9.1 75 272-346 23-97 (108)
131 2cqp_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 125.2 7.4 82 99-180 13-94 (98)
132 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.9E-18 1.3E-22 125.8 7.1 82 98-181 16-98 (100)
133 2cph_A RNA binding motif prote 99.7 2E-17 7E-22 123.6 11.1 76 271-346 11-88 (107)
134 1x4d_A Matrin 3; structural ge 99.7 5.9E-18 2E-22 124.2 7.8 81 99-185 13-96 (102)
135 1p27_B RNA-binding protein 8A; 99.7 1.2E-17 4.2E-22 124.5 9.6 75 272-346 20-94 (106)
136 2cq4_A RNA binding motif prote 99.7 6.7E-18 2.3E-22 127.7 8.2 80 101-181 25-104 (114)
137 2dgw_A Probable RNA-binding pr 99.7 2E-17 6.8E-22 119.8 10.3 81 98-181 7-87 (91)
138 2m2b_A RNA-binding protein 10; 99.7 3.7E-18 1.3E-22 132.4 6.8 83 99-182 21-109 (131)
139 2krb_A Eukaryotic translation 99.7 4.7E-18 1.6E-22 120.2 6.6 73 101-175 1-80 (81)
140 2ki2_A SS-DNA binding protein 99.7 2E-18 6.8E-23 124.8 4.7 80 102-182 2-81 (90)
141 2dis_A Unnamed protein product 99.7 1.5E-17 5.2E-22 124.7 9.7 85 98-182 5-93 (109)
142 1oo0_B CG8781-PA, drosophila Y 99.7 1.9E-17 6.4E-22 124.4 10.0 75 272-346 23-97 (110)
143 2cpj_A Non-POU domain-containi 99.7 1.9E-17 6.5E-22 121.9 9.9 85 98-188 12-96 (99)
144 2do0_A HnRNP M, heterogeneous 99.7 3.2E-17 1.1E-21 123.9 11.4 81 99-180 13-93 (114)
145 1x4h_A RNA-binding protein 28; 99.7 2.2E-17 7.4E-22 124.3 10.3 75 272-346 12-92 (111)
146 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.9E-17 9.9E-22 131.4 11.7 84 98-181 36-119 (156)
147 2cqb_A Peptidyl-prolyl CIS-tra 99.7 8.1E-18 2.8E-22 124.6 7.8 75 272-346 9-83 (102)
148 2div_A TRNA selenocysteine ass 99.7 7.8E-18 2.7E-22 124.0 7.5 74 273-346 7-81 (99)
149 2dgp_A Bruno-like 4, RNA bindi 99.7 2.4E-17 8.1E-22 123.0 10.2 75 272-346 10-87 (106)
150 2cqg_A TDP-43, TAR DNA-binding 99.7 3.8E-17 1.3E-21 121.1 11.2 83 98-182 12-94 (103)
151 2nlw_A Eukaryotic translation 99.7 1.7E-17 5.8E-22 123.4 9.1 79 100-180 14-99 (105)
152 2cq0_A Eukaryotic translation 99.7 1.1E-17 3.7E-22 124.2 8.0 75 272-346 12-86 (103)
153 2err_A Ataxin-2-binding protei 99.7 2E-17 6.8E-22 123.9 9.5 83 97-181 25-107 (109)
154 1x4a_A Splicing factor, argini 99.7 4.3E-17 1.5E-21 122.2 11.3 81 98-181 19-99 (109)
155 2do4_A Squamous cell carcinoma 99.7 1.6E-17 5.4E-22 122.5 8.7 74 272-346 14-87 (100)
156 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.5E-17 8.7E-22 129.3 10.4 81 98-178 60-140 (140)
157 2kxn_B Transformer-2 protein h 99.7 2.3E-17 7.8E-22 127.3 9.9 76 271-346 42-117 (129)
158 2cpi_A CCR4-NOT transcription 99.7 1.5E-17 5E-22 125.1 8.6 86 99-184 13-104 (111)
159 2dgo_A Cytotoxic granule-assoc 99.7 2E-17 6.8E-22 125.3 9.3 76 271-346 11-86 (115)
160 1x4b_A Heterogeneous nuclear r 99.7 2E-17 7E-22 125.4 9.3 81 101-182 27-107 (116)
161 2a3j_A U1 small nuclear ribonu 99.7 3.8E-17 1.3E-21 125.2 10.7 82 98-182 26-111 (127)
162 2jwn_A Embryonic polyadenylate 99.7 2.5E-17 8.4E-22 126.5 9.7 80 101-181 36-115 (124)
163 2cpy_A RNA-binding protein 12; 99.7 9.8E-18 3.3E-22 126.7 7.2 82 98-181 12-94 (114)
164 2khc_A Testis-specific RNP-typ 99.7 2.7E-17 9.3E-22 125.1 9.7 75 272-346 37-111 (118)
165 1wg5_A Heterogeneous nuclear r 99.7 2.4E-17 8.1E-22 122.4 9.1 82 98-181 12-94 (104)
166 1wez_A HnRNP H', FTP-3, hetero 99.7 1.5E-17 5.2E-22 122.8 8.0 81 97-180 11-91 (102)
167 1x5t_A Splicing factor 3B subu 99.7 9.7E-18 3.3E-22 122.7 6.9 72 275-346 5-77 (96)
168 1iqt_A AUF1, heterogeneous nuc 99.7 7.4E-18 2.5E-22 117.4 6.0 75 103-178 1-75 (75)
169 2mss_A Protein (musashi1); RNA 99.7 1.1E-17 3.9E-22 116.4 6.9 69 277-346 1-69 (75)
170 1x5o_A RNA binding motif, sing 99.7 4.6E-17 1.6E-21 123.1 10.6 82 99-181 23-112 (114)
171 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-17 5.3E-22 116.3 7.1 66 275-346 7-72 (89)
172 1sjq_A Polypyrimidine tract-bi 99.7 2.1E-17 7.1E-22 121.3 8.0 68 273-346 14-83 (105)
173 2hgl_A HNRPF protein, heteroge 99.7 1.3E-17 4.5E-22 129.2 7.4 81 98-180 41-124 (136)
174 2dnh_A Bruno-like 5, RNA bindi 99.7 4.3E-17 1.5E-21 121.3 9.9 71 273-344 13-83 (105)
175 2ad9_A Polypyrimidine tract-bi 99.7 4.7E-17 1.6E-21 122.5 10.0 78 98-181 28-107 (119)
176 1wi8_A EIF-4B, eukaryotic tran 99.7 4.5E-17 1.5E-21 121.0 9.8 72 273-346 13-85 (104)
177 4a8x_A RNA-binding protein wit 99.7 1.3E-17 4.6E-22 119.9 6.7 72 275-346 4-76 (88)
178 2cq3_A RNA-binding protein 9; 99.7 6.3E-17 2.2E-21 120.0 10.5 75 270-346 10-84 (103)
179 2db1_A Heterogeneous nuclear r 99.7 1.6E-17 5.5E-22 126.2 7.4 81 98-180 14-97 (118)
180 2ywk_A Putative RNA-binding pr 99.7 2E-17 6.9E-22 120.8 7.7 74 272-346 13-86 (95)
181 2dgx_A KIAA0430 protein; RRM d 99.7 3.3E-17 1.1E-21 119.8 8.8 71 273-346 7-81 (96)
182 2d9p_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 121.6 8.8 73 272-346 12-84 (103)
183 2lea_A Serine/arginine-rich sp 99.7 1.1E-17 3.8E-22 130.2 6.5 82 100-181 46-127 (135)
184 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.4E-17 8.2E-22 121.5 7.9 73 272-346 16-89 (100)
185 2cpz_A CUG triplet repeat RNA- 99.7 2E-17 6.9E-22 125.2 7.7 75 272-346 22-96 (115)
186 3s7r_A Heterogeneous nuclear r 99.7 1.9E-17 6.7E-22 118.8 7.2 73 273-346 9-81 (87)
187 2cq1_A PTB-like protein L; RRM 99.7 7.6E-17 2.6E-21 118.4 10.4 77 99-181 13-91 (101)
188 1wex_A Hypothetical protein (r 99.7 6.5E-17 2.2E-21 119.5 10.1 77 99-181 13-91 (104)
189 3r27_A HnRNP L, heterogeneous 99.7 2.5E-17 8.5E-22 119.6 7.6 67 274-346 20-88 (100)
190 3ex7_B RNA-binding protein 8A; 99.7 6.3E-17 2.2E-21 124.6 10.3 74 273-346 20-93 (126)
191 2la4_A Nuclear and cytoplasmic 99.7 7.7E-17 2.6E-21 119.1 10.3 80 95-180 21-100 (101)
192 2dnq_A RNA-binding protein 4B; 99.7 1.1E-16 3.9E-21 115.5 11.0 78 97-182 4-81 (90)
193 1x4f_A Matrin 3; structural ge 99.7 2.1E-17 7.1E-22 123.0 7.2 84 98-187 22-108 (112)
194 3ucg_A Polyadenylate-binding p 99.7 2.1E-17 7.2E-22 119.1 7.0 71 275-346 6-76 (89)
195 2nlw_A Eukaryotic translation 99.7 4E-17 1.4E-21 121.4 8.7 69 275-345 15-89 (105)
196 2kt5_A RNA and export factor-b 99.7 9.6E-17 3.3E-21 123.2 11.0 76 270-346 30-105 (124)
197 2fy1_A RNA-binding motif prote 99.7 3.9E-17 1.3E-21 123.7 8.6 71 275-346 7-77 (116)
198 2dhg_A TRNA selenocysteine ass 99.7 4.3E-17 1.5E-21 121.1 8.7 72 274-346 8-81 (104)
199 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.6E-17 2.3E-21 119.9 9.6 73 272-346 12-84 (103)
200 1wg5_A Heterogeneous nuclear r 99.7 8.6E-17 2.9E-21 119.4 10.1 72 273-346 13-85 (104)
201 2jvr_A Nucleolar protein 3; RN 99.7 5.3E-17 1.8E-21 121.2 8.9 81 96-180 23-104 (111)
202 2cqp_A RNA-binding protein 12; 99.7 1E-17 3.4E-22 123.1 5.0 76 271-346 11-86 (98)
203 2cq4_A RNA binding motif prote 99.7 3.8E-17 1.3E-21 123.5 8.3 73 273-346 23-95 (114)
204 2dgv_A HnRNP M, heterogeneous 99.7 6.1E-17 2.1E-21 117.5 9.0 72 273-346 6-77 (92)
205 3ulh_A THO complex subunit 4; 99.7 3.8E-17 1.3E-21 122.1 8.1 74 272-346 26-99 (107)
206 2cpe_A RNA-binding protein EWS 99.7 4.8E-17 1.6E-21 122.8 8.7 75 272-346 12-94 (113)
207 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.8E-17 6E-22 116.1 5.9 70 276-346 1-70 (77)
208 2dng_A Eukaryotic translation 99.7 4.4E-17 1.5E-21 120.8 8.4 73 272-346 12-84 (103)
209 2diu_A KIAA0430 protein; struc 99.7 1.6E-16 5.6E-21 112.1 10.7 79 100-188 7-91 (96)
210 1wel_A RNA-binding protein 12; 99.7 1.1E-17 3.6E-22 128.5 5.1 82 98-180 22-103 (124)
211 1wg1_A KIAA1579 protein, homol 99.7 5E-17 1.7E-21 116.8 8.3 84 99-189 3-86 (88)
212 2cpf_A RNA binding motif prote 99.7 1.4E-17 4.7E-22 122.4 5.5 72 275-346 5-79 (98)
213 1p1t_A Cleavage stimulation fa 99.7 1.5E-17 5.2E-22 123.6 5.7 74 273-346 6-79 (104)
214 1why_A Hypothetical protein ri 99.7 1.3E-16 4.6E-21 116.8 10.7 78 98-181 14-93 (97)
215 3pgw_S U1-70K; protein-RNA com 99.7 5.1E-18 1.8E-22 157.3 3.8 74 273-346 100-173 (437)
216 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.9E-17 2.7E-21 126.5 9.9 77 270-346 58-134 (140)
217 2ki2_A SS-DNA binding protein 99.7 1.9E-17 6.4E-22 119.6 5.7 70 276-346 2-71 (90)
218 2fc9_A NCL protein; structure 99.7 7.9E-17 2.7E-21 119.0 9.2 81 98-182 12-92 (101)
219 2m2b_A RNA-binding protein 10; 99.7 2.8E-17 9.6E-22 127.4 7.0 73 273-346 21-99 (131)
220 2dnn_A RNA-binding protein 12; 99.7 5.8E-17 2E-21 120.7 8.4 78 101-181 16-93 (109)
221 2xnq_A Nuclear polyadenylated 99.7 2.1E-16 7E-21 115.7 11.2 79 95-181 16-95 (97)
222 1x4g_A Nucleolysin TIAR; struc 99.7 1.3E-16 4.4E-21 119.6 10.3 81 97-183 21-101 (109)
223 2lmi_A GRSF-1, G-rich sequence 99.7 1.6E-17 5.5E-22 124.0 5.3 81 98-180 8-91 (107)
224 2cqd_A RNA-binding region cont 99.7 9.3E-17 3.2E-21 121.8 9.6 74 272-346 14-87 (116)
225 1fj7_A Nucleolin RBD1, protein 99.7 7.8E-18 2.7E-22 124.4 3.5 81 99-181 15-95 (101)
226 1x4d_A Matrin 3; structural ge 99.7 4.4E-17 1.5E-21 119.5 7.4 67 274-346 14-83 (102)
227 3n9u_C Cleavage and polyadenyl 99.7 3.3E-17 1.1E-21 130.5 7.3 72 275-346 55-128 (156)
228 1nu4_A U1A RNA binding domain; 99.7 5.1E-17 1.7E-21 119.1 7.8 82 98-182 5-90 (97)
229 2ek1_A RNA-binding protein 12; 99.7 1E-17 3.4E-22 122.4 3.9 74 273-346 13-86 (95)
230 1x4c_A Splicing factor, argini 99.7 2.1E-16 7.2E-21 118.1 11.2 76 99-181 13-93 (108)
231 2ytc_A PRE-mRNA-splicing facto 99.7 1.4E-16 4.9E-21 113.7 9.8 76 98-179 9-85 (85)
232 2e5j_A Methenyltetrahydrofolat 99.7 1.2E-16 4.3E-21 117.0 9.7 79 98-181 16-94 (97)
233 2dnn_A RNA-binding protein 12; 99.7 8.3E-17 2.8E-21 119.9 8.6 72 272-346 13-84 (109)
234 2dh8_A DAZ-associated protein 99.7 5E-17 1.7E-21 121.0 7.4 75 271-346 12-86 (105)
235 1wex_A Hypothetical protein (r 99.7 1.3E-16 4.4E-21 117.8 9.4 68 273-346 13-82 (104)
236 1iqt_A AUF1, heterogeneous nuc 99.7 3.8E-17 1.3E-21 113.7 5.9 69 277-346 1-69 (75)
237 2f3j_A RNA and export factor b 99.7 1.7E-16 5.7E-21 129.3 10.4 85 98-183 85-169 (177)
238 2err_A Ataxin-2-binding protei 99.7 6.4E-17 2.2E-21 121.1 7.3 75 270-346 24-98 (109)
239 2dis_A Unnamed protein product 99.7 1.5E-16 5.2E-21 119.2 9.3 72 275-346 8-83 (109)
240 2cq1_A PTB-like protein L; RRM 99.7 1.7E-16 5.7E-21 116.5 9.3 69 272-346 12-82 (101)
241 2cpx_A Hypothetical protein FL 99.7 3E-17 1E-21 124.3 5.3 80 98-181 22-105 (115)
242 2j8a_A Histone-lysine N-methyl 99.7 8.2E-17 2.8E-21 120.2 7.5 79 102-180 3-95 (136)
243 2rs2_A Musashi-1, RNA-binding 99.7 9.3E-17 3.2E-21 120.2 7.8 74 272-346 22-95 (109)
244 2dha_A FLJ20171 protein; RRM d 99.7 5.5E-17 1.9E-21 123.4 6.6 80 98-179 20-103 (123)
245 2jvo_A Nucleolar protein 3; nu 99.7 2.5E-16 8.7E-21 117.5 10.1 78 96-181 26-103 (108)
246 2a3j_A U1 small nuclear ribonu 99.7 2E-16 6.9E-21 121.1 9.6 70 274-346 28-101 (127)
247 2fc8_A NCL protein; structure 99.7 1.9E-16 6.6E-21 117.1 9.1 83 97-182 11-93 (102)
248 2dgt_A RNA-binding protein 30; 99.7 3.6E-16 1.2E-20 113.3 10.4 78 97-182 6-83 (92)
249 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.3E-21 120.1 8.1 68 273-346 29-98 (119)
250 2dnp_A RNA-binding protein 14; 99.7 3.4E-16 1.1E-20 113.0 10.0 77 97-181 5-81 (90)
251 1u6f_A Tcubp1, RNA-binding pro 99.7 8.3E-17 2.9E-21 126.2 7.3 76 271-346 38-113 (139)
252 1wez_A HnRNP H', FTP-3, hetero 99.7 8.8E-17 3E-21 118.7 7.0 71 273-346 13-83 (102)
253 1x5o_A RNA binding motif, sing 99.7 2.2E-16 7.4E-21 119.3 9.3 71 274-345 24-94 (114)
254 2do0_A HnRNP M, heterogeneous 99.7 1.6E-16 5.5E-21 120.1 8.6 73 273-346 13-85 (114)
255 2xs2_A Deleted in azoospermia- 99.7 4.4E-17 1.5E-21 120.6 5.4 80 100-182 8-87 (102)
256 2cpi_A CCR4-NOT transcription 99.7 9E-17 3.1E-21 120.8 7.1 73 274-346 14-92 (111)
257 2lcw_A RNA-binding protein FUS 99.5 4.7E-18 1.6E-22 129.0 0.0 83 99-181 5-95 (116)
258 1x4b_A Heterogeneous nuclear r 99.7 7.4E-17 2.5E-21 122.3 6.5 76 270-346 22-97 (116)
259 1whx_A Hypothetical protein ri 99.7 2.6E-16 9E-21 118.1 9.4 66 275-346 10-75 (111)
260 2lmi_A GRSF-1, G-rich sequence 99.7 1.1E-16 3.8E-21 119.4 7.3 72 273-346 9-83 (107)
261 1x4a_A Splicing factor, argini 99.7 4E-16 1.4E-20 116.9 10.2 72 272-346 19-90 (109)
262 2cpy_A RNA-binding protein 12; 99.7 8.8E-17 3E-21 121.4 6.6 72 273-346 13-85 (114)
263 1whx_A Hypothetical protein ri 99.7 1.9E-16 6.5E-21 118.9 8.3 75 100-180 9-83 (111)
264 2hgn_A Heterogeneous nuclear r 99.7 5E-17 1.7E-21 126.4 5.3 71 273-346 44-114 (139)
265 2kvi_A Nuclear polyadenylated 99.7 2.4E-16 8.2E-21 115.2 8.5 77 97-181 6-83 (96)
266 2hgm_A HNRPF protein, heteroge 99.7 1.3E-16 4.4E-21 121.6 7.1 81 97-180 38-120 (126)
267 1fjc_A Nucleolin RBD2, protein 99.7 9.5E-17 3.2E-21 117.4 6.0 77 100-181 15-91 (96)
268 2dgu_A Heterogeneous nuclear r 99.7 6E-16 2.1E-20 114.6 10.4 75 99-181 9-83 (103)
269 2cpd_A Apobec-1 stimulating pr 99.7 9.9E-16 3.4E-20 112.6 11.4 76 99-182 13-90 (99)
270 2dnq_A RNA-binding protein 4B; 99.7 5.4E-16 1.9E-20 111.9 9.8 66 273-346 6-71 (90)
271 2dgw_A Probable RNA-binding pr 99.7 1.4E-16 4.9E-21 115.2 6.7 70 274-346 9-78 (91)
272 2cpj_A Non-POU domain-containi 99.7 3.2E-16 1.1E-20 115.3 8.7 69 272-346 12-80 (99)
273 2hgn_A Heterogeneous nuclear r 99.7 7E-17 2.4E-21 125.5 5.1 81 98-181 43-123 (139)
274 2jvr_A Nucleolar protein 3; RN 99.7 1.7E-16 5.8E-21 118.4 7.0 68 275-346 28-96 (111)
275 2e44_A Insulin-like growth fac 99.7 3.9E-16 1.3E-20 114.1 8.7 79 99-181 13-92 (96)
276 3lqv_A PRE-mRNA branch site pr 99.6 4.8E-16 1.6E-20 117.6 9.5 70 274-346 7-76 (115)
277 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.4E-16 8.2E-21 126.0 8.2 74 273-346 37-110 (156)
278 2ytc_A PRE-mRNA-splicing facto 99.6 3.4E-16 1.1E-20 111.7 8.1 69 272-346 9-78 (85)
279 2cqg_A TDP-43, TAR DNA-binding 99.6 3.6E-16 1.2E-20 115.9 8.3 72 272-345 12-83 (103)
280 1why_A Hypothetical protein ri 99.6 8.2E-16 2.8E-20 112.6 10.0 67 274-346 16-84 (97)
281 2e5g_A U6 snRNA-specific termi 99.6 7E-16 2.4E-20 112.3 9.5 78 98-181 5-82 (94)
282 3md3_A Nuclear and cytoplasmic 99.6 9.9E-16 3.4E-20 123.5 11.4 82 98-179 84-165 (166)
283 1wel_A RNA-binding protein 12; 99.6 8.3E-17 2.8E-21 123.5 4.7 74 272-346 22-95 (124)
284 2jwn_A Embryonic polyadenylate 99.6 1.4E-16 4.7E-21 122.3 5.9 72 274-346 35-106 (124)
285 1x4f_A Matrin 3; structural ge 99.6 2.9E-16 9.9E-21 116.8 7.3 68 273-346 23-93 (112)
286 2fc9_A NCL protein; structure 99.6 5.1E-16 1.7E-20 114.6 8.5 71 272-346 12-82 (101)
287 2hgl_A HNRPF protein, heteroge 99.6 8.3E-17 2.8E-21 124.7 4.3 72 273-346 42-116 (136)
288 2dnl_A Cytoplasmic polyadenyla 99.6 7E-16 2.4E-20 116.4 9.4 78 99-179 6-86 (114)
289 2hgm_A HNRPF protein, heteroge 99.6 6.2E-16 2.1E-20 117.9 9.0 71 273-346 40-112 (126)
290 1fj7_A Nucleolin RBD1, protein 99.6 8.6E-17 2.9E-21 118.8 4.1 72 273-346 15-86 (101)
291 2cqh_A IGF-II mRNA-binding pro 99.6 3.6E-16 1.2E-20 113.6 7.4 77 98-181 5-83 (93)
292 2db1_A Heterogeneous nuclear r 99.6 1.2E-16 4.1E-21 121.4 4.9 72 273-346 15-89 (118)
293 3egn_A RNA-binding protein 40; 99.6 1.1E-16 3.9E-21 126.0 4.9 80 98-180 42-129 (143)
294 1wf1_A RNA-binding protein RAL 99.6 9.3E-16 3.2E-20 115.0 9.2 73 100-180 26-99 (110)
295 2jvo_A Nucleolar protein 3; nu 99.6 4.7E-16 1.6E-20 116.1 7.2 69 270-346 26-94 (108)
296 2xs2_A Deleted in azoospermia- 99.6 2.1E-16 7.3E-21 116.9 5.1 71 272-345 6-76 (102)
297 3q2s_C Cleavage and polyadenyl 99.6 3.5E-16 1.2E-20 132.7 7.2 72 275-346 68-141 (229)
298 2xnq_A Nuclear polyadenylated 99.6 1E-15 3.5E-20 111.9 8.7 67 272-346 19-86 (97)
299 1x4c_A Splicing factor, argini 99.6 1.2E-15 4.1E-20 114.0 9.1 64 274-344 14-77 (108)
300 2cq2_A Hypothetical protein LO 99.6 1.1E-15 3.7E-20 113.8 8.6 78 96-179 20-104 (114)
301 1x4g_A Nucleolysin TIAR; struc 99.6 8.1E-16 2.8E-20 115.2 8.0 66 275-346 25-90 (109)
302 2hvz_A Splicing factor, argini 99.6 4.9E-16 1.7E-20 114.7 6.6 66 276-346 1-66 (101)
303 3pgw_S U1-70K; protein-RNA com 99.6 1.3E-15 4.6E-20 141.1 11.0 82 100-181 101-182 (437)
304 2kvi_A Nuclear polyadenylated 99.6 1.2E-15 4.1E-20 111.4 8.5 66 273-346 8-74 (96)
305 2e5j_A Methenyltetrahydrofolat 99.6 8.8E-16 3E-20 112.4 7.7 69 273-346 17-85 (97)
306 1nu4_A U1A RNA binding domain; 99.6 3.2E-16 1.1E-20 114.8 5.3 70 274-346 7-80 (97)
307 3beg_B Splicing factor, argini 99.6 9.2E-16 3.2E-20 115.9 8.0 65 275-346 16-80 (115)
308 3d2w_A TAR DNA-binding protein 99.6 1.9E-15 6.6E-20 108.5 9.2 76 97-181 7-84 (89)
309 1wf1_A RNA-binding protein RAL 99.6 1.1E-15 3.7E-20 114.7 8.1 85 253-346 6-91 (110)
310 2la4_A Nuclear and cytoplasmic 99.6 8.9E-16 3E-20 113.3 7.5 66 275-346 27-92 (101)
311 2f3j_A RNA and export factor b 99.6 1.5E-15 5E-20 123.6 9.5 75 271-346 84-158 (177)
312 2dnp_A RNA-binding protein 14; 99.6 1.2E-15 4E-20 110.1 7.9 66 273-346 7-72 (90)
313 2dgu_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 113.2 7.9 67 272-346 8-74 (103)
314 2pe8_A Splicing factor 45; RRM 99.6 4.5E-15 1.5E-19 109.8 11.0 83 98-180 5-93 (105)
315 1x5p_A Negative elongation fac 99.6 4.2E-15 1.4E-19 108.8 10.6 77 98-182 12-88 (97)
316 2yh0_A Splicing factor U2AF 65 99.6 2.8E-15 9.6E-20 124.6 10.9 83 99-181 112-194 (198)
317 2hzc_A Splicing factor U2AF 65 99.6 2E-15 6.9E-20 108.1 8.5 72 99-177 4-86 (87)
318 2cpx_A Hypothetical protein FL 99.6 1.3E-15 4.6E-20 115.1 7.8 70 273-346 23-96 (115)
319 1sjr_A Polypyrimidine tract-bi 99.6 4.1E-15 1.4E-19 117.5 10.8 77 101-181 46-124 (164)
320 3zzy_A Polypyrimidine tract-bi 99.6 5.3E-15 1.8E-19 112.6 10.9 76 102-182 29-107 (130)
321 2fc8_A NCL protein; structure 99.6 1.2E-15 4E-20 112.9 7.1 73 271-346 11-83 (102)
322 3beg_B Splicing factor, argini 99.6 1.7E-15 5.8E-20 114.4 8.1 74 100-180 15-93 (115)
323 2cpd_A Apobec-1 stimulating pr 99.6 3.6E-15 1.2E-19 109.6 9.7 68 271-346 11-80 (99)
324 2dgt_A RNA-binding protein 30; 99.6 2.5E-15 8.4E-20 108.9 8.6 67 272-346 7-73 (92)
325 2lcw_A RNA-binding protein FUS 99.4 6E-17 2.1E-21 122.8 0.0 73 274-346 6-86 (116)
326 2dha_A FLJ20171 protein; RRM d 99.6 4.3E-16 1.5E-20 118.5 4.6 68 276-345 24-95 (123)
327 2cq2_A Hypothetical protein LO 99.6 1.1E-15 3.9E-20 113.6 6.8 62 275-342 25-88 (114)
328 2j8a_A Histone-lysine N-methyl 99.6 3.7E-16 1.3E-20 116.7 4.1 71 276-346 3-87 (136)
329 2diu_A KIAA0430 protein; struc 99.6 3.3E-15 1.1E-19 105.5 8.7 61 276-346 10-75 (96)
330 2hzc_A Splicing factor U2AF 65 99.6 2.2E-15 7.5E-20 107.9 7.8 66 274-346 5-81 (87)
331 2dnl_A Cytoplasmic polyadenyla 99.6 1.7E-15 5.7E-20 114.4 7.3 66 275-341 8-79 (114)
332 2pe8_A Splicing factor 45; RRM 99.6 2.9E-15 9.9E-20 110.8 8.1 73 274-346 7-85 (105)
333 2voo_A Lupus LA protein; RNA-b 99.6 3.8E-15 1.3E-19 123.0 9.8 111 234-346 63-178 (193)
334 1b7f_A Protein (SXL-lethal pro 99.6 6.7E-15 2.3E-19 118.9 11.0 80 99-178 87-168 (168)
335 1fjc_A Nucleolin RBD2, protein 99.6 9.6E-16 3.3E-20 112.0 4.9 70 272-346 13-82 (96)
336 2e44_A Insulin-like growth fac 99.6 4.9E-15 1.7E-19 108.2 8.4 69 274-346 14-83 (96)
337 1sjr_A Polypyrimidine tract-bi 99.6 6E-15 2E-19 116.6 9.0 66 275-344 46-111 (164)
338 2e5i_A Heterogeneous nuclear r 99.6 1.8E-14 6.3E-19 109.2 11.2 74 103-182 27-103 (124)
339 3tyt_A Heterogeneous nuclear r 99.6 5.2E-15 1.8E-19 123.5 8.4 67 275-346 4-71 (205)
340 2voo_A Lupus LA protein; RNA-b 99.6 1.1E-14 3.9E-19 120.1 10.2 78 101-180 109-186 (193)
341 2cqh_A IGF-II mRNA-binding pro 99.6 2.2E-15 7.5E-20 109.4 4.6 66 274-346 7-74 (93)
342 1wg1_A KIAA1579 protein, homol 99.6 2.6E-15 8.8E-20 107.8 4.9 65 275-346 5-69 (88)
343 1wf0_A TDP-43, TAR DNA-binding 99.6 3.1E-15 1.1E-19 107.4 5.3 77 99-182 3-79 (88)
344 2e5g_A U6 snRNA-specific termi 99.6 9.7E-15 3.3E-19 106.1 7.8 66 275-346 8-73 (94)
345 2bz2_A Negative elongation fac 99.5 1.8E-14 6.2E-19 109.6 9.5 77 97-181 35-111 (121)
346 3egn_A RNA-binding protein 40; 99.5 8.7E-16 3E-20 120.9 1.8 73 274-346 44-121 (143)
347 3d2w_A TAR DNA-binding protein 99.5 1.4E-14 4.7E-19 104.0 7.9 62 273-343 9-70 (89)
348 1x5p_A Negative elongation fac 99.5 2.3E-14 7.7E-19 104.8 9.2 66 273-346 13-78 (97)
349 3v4m_A Splicing factor U2AF 65 99.5 1.5E-14 5.1E-19 107.0 8.0 73 274-346 4-88 (105)
350 3zzy_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 110.0 8.1 64 276-344 29-93 (130)
351 2e5i_A Heterogeneous nuclear r 99.5 3.9E-14 1.3E-18 107.4 10.1 64 276-345 26-90 (124)
352 1fje_B Nucleolin RBD12, protei 99.5 2.2E-14 7.5E-19 116.8 8.5 77 100-181 98-174 (175)
353 2dit_A HIV TAT specific factor 99.5 9.7E-14 3.3E-18 104.2 10.6 85 96-184 10-105 (112)
354 3u1l_A PRE-mRNA-splicing facto 99.5 4.1E-14 1.4E-18 119.4 9.1 78 98-181 131-229 (240)
355 2adc_A Polypyrimidine tract-bi 99.5 6E-14 2.1E-18 119.4 9.4 72 270-346 29-101 (229)
356 3ue2_A Poly(U)-binding-splicin 99.5 1.7E-14 5.7E-19 108.8 5.1 72 275-346 20-100 (118)
357 3u1l_A PRE-mRNA-splicing facto 99.5 6.5E-14 2.2E-18 118.2 9.0 84 253-342 112-204 (240)
358 2bz2_A Negative elongation fac 99.5 6.5E-14 2.2E-18 106.5 7.3 66 273-346 37-102 (121)
359 3v4m_A Splicing factor U2AF 65 99.5 1.3E-13 4.3E-18 102.0 8.7 81 100-180 4-96 (105)
360 1wf0_A TDP-43, TAR DNA-binding 99.5 2.6E-14 8.8E-19 102.5 3.8 55 275-334 5-59 (88)
361 2dit_A HIV TAT specific factor 99.5 1.9E-13 6.5E-18 102.6 8.3 72 271-346 11-93 (112)
362 1jmt_A Splicing factor U2AF 35 99.4 5E-14 1.7E-18 104.0 4.2 72 106-178 20-103 (104)
363 3pgw_A U1-A; protein-RNA compl 99.4 4.5E-13 1.5E-17 117.6 10.9 77 98-179 204-281 (282)
364 1qm9_A Polypyrimidine tract-bi 99.4 2.7E-13 9.4E-18 112.6 9.0 77 99-180 118-196 (198)
365 3ue2_A Poly(U)-binding-splicin 99.4 4.1E-13 1.4E-17 101.1 8.3 81 100-180 19-108 (118)
366 1jmt_A Splicing factor U2AF 35 99.4 9.3E-14 3.2E-18 102.6 4.0 66 280-346 20-97 (104)
367 3s6e_A RNA-binding protein 39; 99.3 2.2E-12 7.5E-17 96.4 7.5 69 274-346 6-84 (114)
368 3tht_A Alkylated DNA repair pr 99.3 2.3E-12 7.8E-17 114.6 8.5 64 273-342 16-81 (345)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4.1E-16 90.1 10.3 74 101-181 10-90 (100)
370 3s6e_A RNA-binding protein 39; 99.3 2.6E-11 8.9E-16 90.6 9.6 79 98-180 4-92 (114)
371 3tht_A Alkylated DNA repair pr 99.3 1.2E-11 4.1E-16 110.0 9.1 77 97-179 14-97 (345)
372 2d9o_A DNAJ (HSP40) homolog, s 99.2 9.2E-11 3.1E-15 85.4 9.4 63 276-345 11-80 (100)
373 1owx_A Lupus LA protein, SS-B, 99.2 1.2E-10 3.9E-15 87.1 8.4 75 99-179 16-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 1.4E-10 4.8E-15 81.1 7.8 74 99-181 5-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.1 4.2E-10 1.4E-14 84.1 9.6 68 272-345 15-86 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 3.2E-10 1.1E-14 79.3 5.8 64 274-346 6-77 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 1.4E-09 4.7E-14 76.4 6.7 73 98-179 12-93 (95)
378 3dxb_A Thioredoxin N-terminall 98.9 3.5E-09 1.2E-13 89.3 8.9 60 287-346 141-204 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 8.7E-10 3E-14 77.4 3.6 65 273-346 13-86 (95)
380 3dxb_A Thioredoxin N-terminall 98.8 1.1E-08 3.9E-13 86.1 8.7 81 100-180 123-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.7 2.5E-08 8.5E-13 71.3 6.0 65 276-346 22-91 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.6 4.7E-07 1.6E-11 64.8 9.9 74 99-178 19-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.4 8.7E-06 3E-10 57.8 11.7 87 99-194 6-99 (104)
384 1uw4_A UPF3X; nonsense mediate 97.9 6.1E-05 2.1E-09 52.9 7.8 68 102-169 2-71 (91)
385 1uw4_A UPF3X; nonsense mediate 97.8 7.6E-05 2.6E-09 52.4 7.6 70 276-345 2-73 (91)
386 1wey_A Calcipressin 1; structu 97.7 7.3E-05 2.5E-09 53.4 6.5 74 101-180 5-83 (104)
387 1wey_A Calcipressin 1; structu 97.7 4.1E-05 1.4E-09 54.6 5.1 64 276-345 6-74 (104)
388 1wwh_A Nucleoporin 35, nucleop 97.7 0.00017 5.9E-09 52.9 8.3 65 272-344 21-85 (119)
389 2dhx_A Poly (ADP-ribose) polym 97.6 0.00053 1.8E-08 48.7 9.2 88 181-288 8-99 (104)
390 1whv_A Poly(A)-specific ribonu 97.6 0.00014 4.8E-09 51.0 6.1 54 276-338 17-70 (100)
391 3ctr_A Poly(A)-specific ribonu 97.5 0.00032 1.1E-08 49.3 6.5 55 275-338 6-60 (101)
392 1whv_A Poly(A)-specific ribonu 97.5 0.00043 1.5E-08 48.5 7.0 57 99-164 14-70 (100)
393 2l08_A Regulator of nonsense t 97.2 0.00059 2E-08 48.1 5.7 70 276-345 10-81 (97)
394 3ctr_A Poly(A)-specific ribonu 97.2 0.00065 2.2E-08 47.8 5.6 54 102-164 7-60 (101)
395 2l08_A Regulator of nonsense t 97.1 0.00054 1.9E-08 48.3 4.3 70 100-169 8-79 (97)
396 1wwh_A Nucleoporin 35, nucleop 97.0 0.0055 1.9E-07 45.0 8.8 72 100-179 23-95 (119)
397 3p3d_A Nucleoporin 53; structu 96.4 0.0045 1.5E-07 46.1 4.8 68 276-345 8-89 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.1 0.0021 7.2E-08 59.1 2.4 54 276-335 54-107 (464)
399 3pq1_A Poly(A) RNA polymerase; 95.7 0.0066 2.2E-07 55.8 3.6 63 101-170 53-115 (464)
400 3p3d_A Nucleoporin 53; structu 95.4 0.019 6.7E-07 42.7 4.6 78 101-180 7-98 (132)
401 3d45_A Poly(A)-specific ribonu 91.0 0.65 2.2E-05 43.5 8.1 56 274-338 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 88.8 1 3.5E-05 42.1 7.5 55 101-164 440-494 (507)
403 4eyt_A Telomerase associated p 62.9 33 0.0011 23.2 8.0 57 275-339 12-68 (129)
404 4e8u_A Putative uncharacterize 56.3 13 0.00044 29.0 4.2 57 276-335 13-81 (172)
405 4eyt_A Telomerase associated p 55.6 45 0.0015 22.6 8.5 57 99-163 10-66 (129)
406 2g0c_A ATP-dependent RNA helic 49.1 51 0.0017 21.3 6.5 61 277-346 2-68 (76)
407 4e8u_A Putative uncharacterize 41.2 49 0.0017 25.7 5.3 55 103-160 14-80 (172)
408 3ts2_A Protein LIN-28 homolog 37.4 9.7 0.00033 28.9 0.8 28 290-325 2-29 (148)
409 3h7h_B Transcription elongatio 33.4 44 0.0015 23.6 3.7 35 302-341 41-75 (106)
410 3fry_A Probable copper-exporti 30.0 1E+02 0.0035 19.2 6.0 58 276-341 7-64 (73)
411 2f06_A Conserved hypothetical 23.5 2.2E+02 0.0074 20.7 9.9 56 282-342 78-135 (144)
412 2okq_A Hypothetical protein YB 23.4 1.8E+02 0.0062 21.5 5.5 44 119-162 51-109 (141)
413 3swz_A Steroid 17-alpha-hydrox 21.8 1.5E+02 0.005 26.8 6.1 59 277-345 16-78 (494)
414 2i9x_A Putative septation prot 21.6 63 0.0022 21.9 2.6 25 302-326 6-30 (87)
415 3j21_T 50S ribosomal protein L 20.2 2E+02 0.0069 19.3 4.9 52 282-336 29-82 (86)
416 2lfv_A Protein DAMX; cell divi 25.6 22 0.00074 25.2 0.0 59 276-339 26-86 (106)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=8.8e-46 Score=327.99 Aligned_cols=235 Identities=19% Similarity=0.357 Sum_probs=217.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..+++|||+|||+++++++|+.+|++|| |..+.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3678999999999999999999999999 999988 457899999999999999999999999999999999999
Q ss_pred CccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCce
Q 019068 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (346)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 258 (346)
.+..+|||+|||+.+++++|+.+|+.+|. |..++++++ ..+|.++|||||.|.+.++|..|+..+++. .+.|+.+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEE
Confidence 99999999999999999999999999999 999999998 778999999999999999999999999984 57899999
Q ss_pred eeecCCCCCCCcccccceEEEEcCCCccc-CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh
Q 019068 259 VSWADPRNVDSSGASQVKAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (346)
Q Consensus 259 v~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 337 (346)
+.|+.+..... .....++|||+|||..+ ++++|+++|+.||.|..++|+++. ++.++|||||+|.+.++|.+|+..|
T Consensus 169 v~~a~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 169 VHWTDAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp EEECCGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHH
T ss_pred EEECCCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHh
Confidence 99998765443 23456899999999995 999999999999999999999987 5666899999999999999999999
Q ss_pred cCcccCCCC
Q 019068 338 EKYELDGDH 346 (346)
Q Consensus 338 ng~~i~gr~ 346 (346)
||..|+||+
T Consensus 247 ~g~~~~g~~ 255 (284)
T 3smz_A 247 DGLSLGGSH 255 (284)
T ss_dssp TTCEETTEE
T ss_pred CCCccCCeE
Confidence 999999974
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.3e-45 Score=326.62 Aligned_cols=243 Identities=19% Similarity=0.324 Sum_probs=206.4
Q ss_pred hhCCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 94 LLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 94 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
....+...++|||+|||+++++++|+.+|+.||.|..|+++++..+ ++|||||+|.+.++|.+|+. +++..+.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 3445567899999999999999999999999999999999998643 58999999999999999995 99999999999
Q ss_pred EEeecCccccceecCCCCCCCHHHHHHHHHhhC-CCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccC
Q 019068 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252 (346)
Q Consensus 174 ~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~ 252 (346)
.|.++. .++|||+|||+.+++++|+.+|+.+| . |..++++++ ..+.++|||||.|.+.++|..|+..|++. .+
T Consensus 111 ~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~ 184 (292)
T 2ghp_A 111 IVSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSL--RFNTSRRFAYIDVTSKEDARYCVEKLNGL--KI 184 (292)
T ss_dssp EEEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EE
T ss_pred EEEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeC--CCCCcceEEEEEECCHHHHHHHHHHhCCC--Ee
Confidence 999985 68999999999999999999999999 8 999999988 33788999999999999999999999985 46
Q ss_pred CCCCceeeecCCCCCCC---cccccceEEEEcCCCcc-cCHHHHHHHhhccCcEEEEEeCCCCC-CCCCCCEEEEEeCCH
Q 019068 253 GTNAPTVSWADPRNVDS---SGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKP-GQEKNRIGFVHFAER 327 (346)
Q Consensus 253 ~~~~~~v~~~~~~~~~~---~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~~~g~afV~f~~~ 327 (346)
.|+.+.|.++.+..... ......++|||+|||.. +++++|+++|++||.|..|+++++.. ++.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 89999999988765433 23445689999999999 99999999999999999999999887 467799999999999
Q ss_pred HHHHHHHHHhcCcccCCCC
Q 019068 328 SSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 328 ~~A~~Al~~lng~~i~gr~ 346 (346)
++|.+|+ .|||..|+||+
T Consensus 265 ~~A~~A~-~l~g~~~~g~~ 282 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNRE 282 (292)
T ss_dssp HHHHHHG-GGTTEEETTEE
T ss_pred HHHHHHH-HhcCCEECCcE
Confidence 9999999 99999999974
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.8e-33 Score=226.65 Aligned_cols=157 Identities=25% Similarity=0.450 Sum_probs=145.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.+++|||+|||+++++++|+.+|++||.|.++++++++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred eecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
....++|||+|||..+++++|+++|++||.|..++++++..++.++|||||+|.+.++|.+|+..|||
T Consensus 86 ------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 86 ------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 01126899999999999999999999999999999999998888899999999999999999999999
Q ss_pred cccCC
Q 019068 340 YELDG 344 (346)
Q Consensus 340 ~~i~g 344 (346)
..|.|
T Consensus 154 ~~~~g 158 (168)
T 1b7f_A 154 VIPEG 158 (168)
T ss_dssp CCCTT
T ss_pred CEecC
Confidence 99988
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=222.49 Aligned_cols=158 Identities=21% Similarity=0.363 Sum_probs=142.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCcc
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (346)
++|||+|||+++++++|+.+|++||.|.++++++++. |.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999864 789999999999999999999999999999999999887531
Q ss_pred ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeee
Q 019068 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (346)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 261 (346)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
......++|||+|||..+++++|+++|++||.|..+.++++..++.++|||||+|.+.++|.+|+..|||..
T Consensus 82 --------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 82 --------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp --------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred --------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 001112799999999999999999999999999999999998888899999999999999999999999999
Q ss_pred cCCCC
Q 019068 342 LDGDH 346 (346)
Q Consensus 342 i~gr~ 346 (346)
|+||+
T Consensus 154 ~~g~~ 158 (166)
T 3md3_A 154 LNGRP 158 (166)
T ss_dssp ETTEE
T ss_pred cCCcE
Confidence 99974
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=1.5e-31 Score=226.22 Aligned_cols=161 Identities=24% Similarity=0.407 Sum_probs=149.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..+||||+|||+++++++|+.+|++||.|.+|+|++++.+|.++|||||+|.+.++|.+|+..+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cc--------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCccc
Q 019068 180 AK--------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251 (346)
Q Consensus 180 ~~--------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 251 (346)
.. .+|||+|||+.+++++|+.+|+.||. |..++++++ . +.++|||||.|.+.++|.+|+..|++. .
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~d-~--~~~~g~~fV~f~~~~~a~~Ai~~lng~--~ 167 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN-ILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKMNGM--L 167 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEE-T--TEEEEEEEEEESSHHHHHHHHHHHTTC--E
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcCC-eEEEEeecc-C--CCCceEEEEEeCCHHHHHHHHHHhCCC--E
Confidence 43 57999999999999999999999999 999999987 2 347999999999999999999999984 4
Q ss_pred CCCCCceeeecCCCC
Q 019068 252 LGTNAPTVSWADPRN 266 (346)
Q Consensus 252 ~~~~~~~v~~~~~~~ 266 (346)
+.|+.+.|.|+.++.
T Consensus 168 ~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 168 LNDRKVFVGRFKSRK 182 (213)
T ss_dssp ETTEECEEEECCCHH
T ss_pred ECCEEEEEEEcCCCc
Confidence 789999999987653
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=7.8e-31 Score=213.21 Aligned_cols=160 Identities=22% Similarity=0.440 Sum_probs=147.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
+++|||+|||+++++++|+.+|++||.|.++.+++++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred c------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCC
Q 019068 181 K------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (346)
Q Consensus 181 ~------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 254 (346)
. .+|||+|||+.+++++|+.+|+.+|. |..++++++ ..+|.++|||||+|.+.++|.+|+..|++..+....
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC-EeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 4 57999999999999999999999999 999999998 678999999999999999999999999996543222
Q ss_pred CCceeeec
Q 019068 255 NAPTVSWA 262 (346)
Q Consensus 255 ~~~~v~~~ 262 (346)
..++|.|+
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 45777774
No 7
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.6e-30 Score=217.85 Aligned_cols=188 Identities=21% Similarity=0.290 Sum_probs=139.4
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIP-HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
.+++|||+||| +.+++++|+.+|++||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 4899999999999999999999999999999999998
Q ss_pred CccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCce
Q 019068 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (346)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 258 (346)
..... .|..... + .-+. ... ++ ........ |.....+ +
T Consensus 78 ~~~~~-----~p~~~~~--~-----~~~~-~~~----~~-~~~~~~~r-----~~~~~~~--------~----------- 115 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG--L-----EDGS-CSY----KD-FSESRNNR-----FSTPEQA--------A----------- 115 (205)
T ss_dssp SCSCC-----CCCSCCB--C-----TTSC-BSE----EE-CTTCTTCS-----CSSHHHH--------T-----------
T ss_pred cCCcc-----CCCcccc--c-----ccCC-ccc----cc-cCCCcccc-----ccCcccc--------c-----------
Confidence 74322 1111000 0 0000 000 00 00000000 0000000 0
Q ss_pred eeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcE--EEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHH
Q 019068 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (346)
Q Consensus 259 v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 336 (346)
.....+++++|||+|||.++|+++|+++|++||.| ..++++++. ++ ++|||||+|.+.++|.+||..
T Consensus 116 ---------~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~-~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 116 ---------KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SE-RSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp ---------TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SS-SSEEEEEECSSHHHHHHHHHH
T ss_pred ---------ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CC-CceEEEEEeCCHHHHHHHHHH
Confidence 00011234799999999999999999999999998 899998886 33 369999999999999999999
Q ss_pred hcCcccCCC
Q 019068 337 TEKYELDGD 345 (346)
Q Consensus 337 lng~~i~gr 345 (346)
|||+.|.|+
T Consensus 185 lng~~~~g~ 193 (205)
T 3tyt_A 185 LNHYQMKNP 193 (205)
T ss_dssp HTTCEECCS
T ss_pred hCCCCccCC
Confidence 999999986
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.1e-30 Score=219.77 Aligned_cols=167 Identities=22% Similarity=0.407 Sum_probs=152.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|||+|||+++++++|+.+|++||.|..|+++++..+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 36799999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred cc-----------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHH
Q 019068 180 AK-----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242 (346)
Q Consensus 180 ~~-----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 242 (346)
.. ++|||+|||..+++++|+.+|+.||. |..++++++ ..++.++|||||+|.+.++|.+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK-IKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC-eeEEEEEec-CCCCCcCceEEEEecCHHHHHHHH
Confidence 43 58999999999999999999999999 999999999 778999999999999999999999
Q ss_pred HHhcCCcccCCCCCceeeecCCCCCCCc
Q 019068 243 QKMTNPNFKLGTNAPTVSWADPRNVDSS 270 (346)
Q Consensus 243 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 270 (346)
..|++. .+.|+.+.|.|+.+...+..
T Consensus 185 ~~l~g~--~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 185 SSMNLF--DLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHTTC--BCSSSBCEEEECSSCSSTTS
T ss_pred HHccCC--EeCCcEEEEEEecCCCCCCC
Confidence 999985 47899999999988765543
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=9.3e-31 Score=212.74 Aligned_cols=157 Identities=27% Similarity=0.495 Sum_probs=145.5
Q ss_pred cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceee
Q 019068 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (346)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 260 (346)
+++|||+|||+.+++++|+.+|+.+|. |..++++++ +.+|.++|||||+|.+.++|..|+..+++ ..+.|+.+.+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHcCC--CccCCceEEEE
Confidence 578999999999999999999999999 999999998 67899999999999999999999999988 45789999999
Q ss_pred ecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCc
Q 019068 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (346)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~ 340 (346)
++.+... ....++|||+|||..+++++|+++|++||.|..++++++..++.++|||||+|.+.++|.+|+..|||.
T Consensus 78 ~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 78 YARPSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp ECCCCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ecCCCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 9876543 234489999999999999999999999999999999999888888999999999999999999999999
Q ss_pred ccCCC
Q 019068 341 ELDGD 345 (346)
Q Consensus 341 ~i~gr 345 (346)
.|.||
T Consensus 154 ~~~g~ 158 (167)
T 1fxl_A 154 KPSGA 158 (167)
T ss_dssp CCTTC
T ss_pred ccCCC
Confidence 99997
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=3.3e-30 Score=211.20 Aligned_cols=161 Identities=24% Similarity=0.467 Sum_probs=146.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCC--CCcceEEEEecCHHHHHHHHHHhcCcccc---CceeE
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS--ENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIR 174 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 174 (346)
.+++|||+|||+++++++|+.+|++||.|.++++++++.+| .++|||||+|.+.++|.+|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998876 89999999999999999999999998876 67888
Q ss_pred EeecC-------ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcC
Q 019068 175 CSTSQ-------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (346)
Q Consensus 175 v~~~~-------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 247 (346)
+.++. +.++|||+|||+.+++++|+.+|+.+|. |..++++++ .+|.++|||||+|.+.++|.+|+..|++
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~v~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IEECRILRG--PDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC--TTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCC-EEEEEEEEC--CCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 88776 3468999999999999999999999999 999999998 3589999999999999999999999998
Q ss_pred CcccCC-CCCceeeecC
Q 019068 248 PNFKLG-TNAPTVSWAD 263 (346)
Q Consensus 248 ~~~~~~-~~~~~v~~~~ 263 (346)
..+..+ ++++.|.|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 764433 5899998873
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.6e-30 Score=217.07 Aligned_cols=167 Identities=20% Similarity=0.449 Sum_probs=149.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.+...++|||+|||+++++++|+.+|++||.|.+|++++++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999996 59999999999999
Q ss_pred ecCcc------------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHH
Q 019068 177 TSQAK------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK 244 (346)
Q Consensus 177 ~~~~~------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 244 (346)
++.+. ++|||+|||+.+++++|+.+|+.||. |..++++++ ..++.++|||||+|.+.++|.+|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK-IEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEEeec-CCCCCccceEEEEECCHHHHHHHHHh
Confidence 88643 68999999999999999999999999 999999999 77899999999999999999999976
Q ss_pred hcCCcccCCCCCceeeecCCCCCCC
Q 019068 245 MTNPNFKLGTNAPTVSWADPRNVDS 269 (346)
Q Consensus 245 l~~~~~~~~~~~~~v~~~~~~~~~~ 269 (346)
++ ..+.|+.+.|.|+.++....
T Consensus 166 -~~--~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KY--HTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SC--CEETTEECEEEECC------
T ss_pred -CC--cEECCEEEEEEecCChhHhc
Confidence 33 46899999999998876554
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.1e-30 Score=212.49 Aligned_cols=159 Identities=23% Similarity=0.511 Sum_probs=147.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.+++|||+|||+++++++|+.+|++||.|.+|++++++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46799999999999999999999999999999999999899999999999999999999997 4678999999999886
Q ss_pred c------cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCC
Q 019068 180 A------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (346)
Q Consensus 180 ~------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 253 (346)
+ .++|||+|||+.+++++|+.+|+.+|. |..++++++ ..+|.++|||||+|.+.++|.+|+. +++ ..+.
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~~~--~~~~ 154 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT-IIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-NKF--IDFK 154 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC-CSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-CSE--ECSS
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc-EEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-CCC--EEeC
Confidence 5 368999999999999999999999999 999999998 6789999999999999999999997 544 6789
Q ss_pred CCCceeeecCCC
Q 019068 254 TNAPTVSWADPR 265 (346)
Q Consensus 254 ~~~~~v~~~~~~ 265 (346)
|+.+.|.|+.++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999875
No 13
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=4.3e-31 Score=223.50 Aligned_cols=160 Identities=20% Similarity=0.370 Sum_probs=142.0
Q ss_pred CccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCce
Q 019068 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (346)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 258 (346)
.+.++|||+|||+.+++++|+++|+.||. |..|+++++ +.++.++|||||+|.+.++|.+|+..+++. .+.++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~--~~~g~~i~ 88 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTMNFD--VIKGKPVR 88 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCC-EEEEEEecc-cCCCCccccccceeCCHHHHHHHHHHhhhh--hcCCcccc
Confidence 45678999999999999999999999999 999999999 789999999999999999999999999885 46788899
Q ss_pred eeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc
Q 019068 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (346)
Q Consensus 259 v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln 338 (346)
+.++...... .....++|||+|||..+++++|+++|+.||.|..++|+++..+ ++|||||+|.+.++|.+|+..||
T Consensus 89 ~~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~--~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 89 IMWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp EEECCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC--CceEEEEEeCCHHHHHHHHHHhC
Confidence 9887655422 2223478999999999999999999999999999999988643 58999999999999999999999
Q ss_pred CcccCCCC
Q 019068 339 KYELDGDH 346 (346)
Q Consensus 339 g~~i~gr~ 346 (346)
|..|+||+
T Consensus 165 g~~~~g~~ 172 (213)
T 4f02_A 165 GMLLNDRK 172 (213)
T ss_dssp TCEETTEE
T ss_pred CCEECCEE
Confidence 99999974
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=5.1e-30 Score=214.42 Aligned_cols=172 Identities=20% Similarity=0.413 Sum_probs=138.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc----C-------CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 168 (346)
.+++|||+|||+++++++|+.+|++| | .|..+.+ +.++|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 5 6666665 456899999999999999999 7999999
Q ss_pred cCceeEEeecCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCC
Q 019068 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (346)
Q Consensus 169 ~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 248 (346)
.|+.|.|.++.+....- .. . . ..
T Consensus 76 ~g~~i~v~~~~~~~~~~------~~------------~----------~--~~--------------------------- 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLP------GM------------S----------E--NP--------------------------- 98 (198)
T ss_dssp TTEEEEEECCCCCCCCC------CS------------S----------S--CS---------------------------
T ss_pred cCceEEEeCCCCCCCCC------CC------------c----------C--CC---------------------------
Confidence 99999998876432100 00 0 0 00
Q ss_pred cccCCCCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHH
Q 019068 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (346)
Q Consensus 249 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 328 (346)
.... +...........++|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.+
T Consensus 99 ~~~~-----------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~ 167 (198)
T 2yh0_A 99 SVYV-----------PGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 167 (198)
T ss_dssp SCCC-----------TTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSS
T ss_pred cCCC-----------CCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHH
Confidence 0000 00001112233489999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHhcCcccCCCC
Q 019068 329 SAMKALKNTEKYELDGDH 346 (346)
Q Consensus 329 ~A~~Al~~lng~~i~gr~ 346 (346)
+|.+|+..|||..|+||+
T Consensus 168 ~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 168 VTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp HHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHcCCCEECCEE
Confidence 999999999999999974
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.4e-29 Score=221.11 Aligned_cols=239 Identities=15% Similarity=0.204 Sum_probs=145.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
...+++|||+|||+++++++|+ .+|++||.|..|++++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568899999999999999977 8999999999999886 58899999999999999999999999999999999
Q ss_pred EEeecCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEE----eCChh-HHHHHHHHhcCC
Q 019068 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIE----YHNHK-CAEYSRQKMTNP 248 (346)
Q Consensus 174 ~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~----f~~~~-~a~~a~~~l~~~ 248 (346)
+|.++............... +......-..... ...................+.+. -.... .+......+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFV-ERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCCcc-cchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99998765432221111100 0000000000000 00000000000000000000000 00000 000000000000
Q ss_pred ccc--CCC----CCc-eeee-------------cCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeC
Q 019068 249 NFK--LGT----NAP-TVSW-------------ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVP 308 (346)
Q Consensus 249 ~~~--~~~----~~~-~v~~-------------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 308 (346)
... ..+ ... ...+ ..+...........++|||+|||..+++++|+++|+.||.|..|+++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 000 000 000 0000 00000011233346899999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC-CCC
Q 019068 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD-GDH 346 (346)
Q Consensus 309 ~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~-gr~ 346 (346)
+++ +|||||+|.+.++|.+|+..|||+.|. ||+
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 274 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNA 274 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE
Confidence 765 689999999999999999999999999 874
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=8.8e-30 Score=215.96 Aligned_cols=162 Identities=20% Similarity=0.457 Sum_probs=143.8
Q ss_pred cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceee
Q 019068 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (346)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 260 (346)
.++|||+|||+.+++++|+.+|+.||. |..++++++ ..++.++|||||+|.+.++|..|+..+++. .+.++.+.|.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~ 103 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWD-SVTMKHKGFAFVEYEVPEAAQLALEQMNSV--MLGGRNIKVG 103 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSC-EEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHHSSC--CCC-CCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCC-EEEEEEeec-CCCCccCceEEEEeCCHHHHHHHHHHccCC--eeCCeeEEEe
Confidence 368999999999999999999999999 999999998 678999999999999999999999999884 5789999998
Q ss_pred ecCCCCCCC-------cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHH
Q 019068 261 WADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (346)
Q Consensus 261 ~~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 333 (346)
++....... ......++|||+|||..+++++|+++|++||.|..++++++..++.++|||||+|.+.++|.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 876654322 1123458999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHhcCcccCCCC
Q 019068 334 LKNTEKYELDGDH 346 (346)
Q Consensus 334 l~~lng~~i~gr~ 346 (346)
+..|||..|+||+
T Consensus 184 ~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 184 VSSMNLFDLGGQY 196 (216)
T ss_dssp HHHHTTCBCSSSB
T ss_pred HHHccCCEeCCcE
Confidence 9999999999984
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.8e-30 Score=211.16 Aligned_cols=156 Identities=17% Similarity=0.364 Sum_probs=141.5
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
+.++|||+|||+.+++++|+.+|+.+|. |..++++++ +.+|.++|||||.|.+.++|..|+..+ ..+.|+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~~----~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT-VTDLKIMKD-PATGRSRGFGFLSFEKPSSVDEVVKTQ----HILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC-EEEEECCCC-TTTSSCCSCEEEEESSTHHHHHHHHSC----CEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEEC-CCCCCccceEEEEEccHHHHHHHHhcc----cccCCeEccc
Confidence 4578999999999999999999999999 999999998 778999999999999999999999842 3578888888
Q ss_pred eecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
.++.+.. .....++|||+|||..+++++|+++|++||.|..++++++..++.++|||||+|.+.++|.+|++ ++|
T Consensus 76 ~~~~~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 76 KRAIPRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp EECCCHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccccchh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 8876543 23345899999999999999999999999999999999999888889999999999999999998 899
Q ss_pred cccCCCC
Q 019068 340 YELDGDH 346 (346)
Q Consensus 340 ~~i~gr~ 346 (346)
..|+||+
T Consensus 151 ~~~~g~~ 157 (167)
T 2cjk_A 151 IDFKDRK 157 (167)
T ss_dssp ECSSSSC
T ss_pred EEeCCeE
Confidence 9999985
No 18
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.8e-30 Score=212.89 Aligned_cols=158 Identities=22% Similarity=0.357 Sum_probs=134.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 96 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
..+...++|||+|||+.+++++|+.+|.+||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 34567889999999999999999999999998766 33444456889999999999999999999 49999999999999
Q ss_pred eecCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCC
Q 019068 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255 (346)
Q Consensus 176 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~ 255 (346)
.++.+...
T Consensus 86 ~~~~~~~~------------------------------------------------------------------------ 93 (175)
T 1fje_B 86 EKPKGRDS------------------------------------------------------------------------ 93 (175)
T ss_dssp ECCCCSSC------------------------------------------------------------------------
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 88764210
Q ss_pred CceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHH
Q 019068 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (346)
Q Consensus 256 ~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 335 (346)
......++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+.
T Consensus 94 --------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 94 --------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp --------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred --------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 000123799999999999999999999999988766 4455678999999999999999999
Q ss_pred HhcCcccCCCC
Q 019068 336 NTEKYELDGDH 346 (346)
Q Consensus 336 ~lng~~i~gr~ 346 (346)
.|||..|+||+
T Consensus 155 ~l~g~~~~g~~ 165 (175)
T 1fje_B 155 EKQGAEIDGRS 165 (175)
T ss_dssp HHTEEEETTEE
T ss_pred HhCCCEECCeE
Confidence 99999999974
No 19
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.4e-29 Score=211.41 Aligned_cols=161 Identities=20% Similarity=0.364 Sum_probs=140.6
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
..++|||+|||+.+++++|+.+|+.||. |..+.++++ ..+|.++|||||.|.+.++|..|+.. ++ ..+.|+.+.+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~-~~--~~~~g~~l~v 86 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNA-RP--HKVDGRVVEP 86 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHT-CS--CEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEEc-CCCCCccceEEEEeCCHHHHHHHHhc-CC--CEECCEEeee
Confidence 4578999999999999999999999999 999999998 78899999999999999999999976 33 4688999999
Q ss_pred eecCCCCCCC--cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh
Q 019068 260 SWADPRNVDS--SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (346)
Q Consensus 260 ~~~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 337 (346)
.++.+..... ......++|||+|||..+++++|+++|+.||.|..++++++..++.++|||||+|.+.++|.+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 9987654332 2334458999999999999999999999999999999999998888899999999999999999985
Q ss_pred cCcccCCCC
Q 019068 338 EKYELDGDH 346 (346)
Q Consensus 338 ng~~i~gr~ 346 (346)
+|..|+||+
T Consensus 166 ~~~~~~G~~ 174 (196)
T 1l3k_A 166 KYHTVNGHN 174 (196)
T ss_dssp SCCEETTEE
T ss_pred CCcEECCEE
Confidence 899999873
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=8.2e-29 Score=202.85 Aligned_cols=158 Identities=18% Similarity=0.405 Sum_probs=138.1
Q ss_pred cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCC--CCccEEEEEeCChhHHHHHHHHhcCCccc-CCCCCc
Q 019068 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSS--NNRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAP 257 (346)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~--~~~g~~~v~f~~~~~a~~a~~~l~~~~~~-~~~~~~ 257 (346)
.++|||+|||+.+++++|+++|+.+|. |..++++++ ..++ .++|||||+|.+.++|..|+..+++..+. ..++.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGA-VYEINVLRD-RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEEE-CSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEec-CCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 468999999999999999999999999 999999998 5555 89999999999999999999999986543 236677
Q ss_pred eeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh
Q 019068 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (346)
Q Consensus 258 ~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 337 (346)
.+.++.+.... ....++|||+|||..+++++|+++|++||.|..++++++.. +.++|||||+|.+.++|.+|+..|
T Consensus 81 ~~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 81 QMKPADSEKNN---AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp EEEECGGGCCS---CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEccccccccc---cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHh
Confidence 77777655432 33458999999999999999999999999999999999864 666999999999999999999999
Q ss_pred cCcccCC
Q 019068 338 EKYELDG 344 (346)
Q Consensus 338 ng~~i~g 344 (346)
||..+.+
T Consensus 157 ~g~~~~~ 163 (175)
T 3nmr_A 157 HQAQTME 163 (175)
T ss_dssp TTSCCCT
T ss_pred cCCcccC
Confidence 9987764
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.8e-28 Score=209.65 Aligned_cols=184 Identities=21% Similarity=0.326 Sum_probs=139.2
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 99 PHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 99 ~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+.+++|||+|||+ ++++++|+.+|++||.|..|++++++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4688999999999 99999999999999999999999874 78999999999999999999999999999999999
Q ss_pred cCccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCc
Q 019068 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (346)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 257 (346)
+.+..... +..... .....+ .|.. .. .. +
T Consensus 107 a~~~~~~~----~~~~~~------------------------~~~~~~-----~~~~-------------~~--~~-~-- 135 (229)
T 2adc_A 107 SKHQNVQL----PREGQE------------------------DQGLTK-----DYGN-------------SP--LH-R-- 135 (229)
T ss_dssp CSCCCCCC----CCSSSS------------------------TTTTEE-----ECTT-------------CS--SC-C--
T ss_pred ecCccccC----cccccc------------------------cccccc-----cccc-------------Cc--cc-c--
Confidence 87542211 110000 000000 0000 00 00 0
Q ss_pred eeeecCCCC-CCCcccccceEEEEcCCCcccCHHHHHHHhhccC-cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHH
Q 019068 258 TVSWADPRN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (346)
Q Consensus 258 ~v~~~~~~~-~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 335 (346)
+..+.. .......++++|||+|||..+++++|+++|++|| .|..+++.+.. +|||||+|.+.++|.+|+.
T Consensus 136 ---~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 136 ---FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp ---CCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHHH
T ss_pred ---cCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHHH
Confidence 000000 0001123358999999999999999999999999 99999997643 6999999999999999999
Q ss_pred HhcCcccC-CCC
Q 019068 336 NTEKYELD-GDH 346 (346)
Q Consensus 336 ~lng~~i~-gr~ 346 (346)
.|||..|+ ||+
T Consensus 208 ~l~g~~~~~g~~ 219 (229)
T 2adc_A 208 DLHNHDLGENHH 219 (229)
T ss_dssp HHTTCBSSSSCB
T ss_pred HHCCCccCCCCe
Confidence 99999999 874
No 22
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.2e-28 Score=206.07 Aligned_cols=184 Identities=20% Similarity=0.294 Sum_probs=139.5
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
.+++|||+|||+ .+++++|+.+|++||.|..|++++++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998864 789999999999999999999999999999999998
Q ss_pred CccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCce
Q 019068 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (346)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 258 (346)
.+.... +|.... ...+..++| ... . . .+...
T Consensus 77 ~~~~~~----~~~~~~------------------------~~~~~~~~~-----~~~-------------~--~-~r~~~ 107 (198)
T 1qm9_A 77 KHQNVQ----LPREGQ------------------------EDQGLTKDY-----GNS-------------P--L-HRFKK 107 (198)
T ss_dssp CCCSCC----CSSSSS------------------------SSSSCEEES-----SCC-------------C--T-TSSSS
T ss_pred cCCCcC----CCCcCC------------------------ccccccccc-----cCC-------------c--h-hhccC
Confidence 754321 111000 000000110 000 0 0 00000
Q ss_pred eeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccC-cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh
Q 019068 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (346)
Q Consensus 259 v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 337 (346)
. .........+++++|||+|||..+++++|+++|++|| .|..+++.++. +|||||+|.+.++|.+|+..|
T Consensus 108 ---~-~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 108 ---P-GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp ---C-CCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHH
T ss_pred ---c-cccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHh
Confidence 0 0000011223458999999999999999999999999 99999997753 699999999999999999999
Q ss_pred cCcccC-CCC
Q 019068 338 EKYELD-GDH 346 (346)
Q Consensus 338 ng~~i~-gr~ 346 (346)
||..|+ ||+
T Consensus 179 ~g~~~~~g~~ 188 (198)
T 1qm9_A 179 HNHDLGENHH 188 (198)
T ss_dssp TSSCCSSCCS
T ss_pred cCCccCCCCe
Confidence 999999 874
No 23
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.3e-28 Score=201.17 Aligned_cols=153 Identities=27% Similarity=0.564 Sum_probs=140.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc----C-------CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 168 (346)
.+++|||+|||+++++++|+.+|++| | .|.++.+. .++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 7 77777764 45899999999999999999 8999999
Q ss_pred cCceeEEeecCcc------ccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHH
Q 019068 169 KGKKIRCSTSQAK------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242 (346)
Q Consensus 169 ~g~~l~v~~~~~~------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 242 (346)
.|+.|.|.++... ++|||+|||+.+++++|+.+|+.+|. |..++++++ ..+|.++|||||+|.+.++|.+|+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSC-EEEEEEEEC-TTTCSEEEEEEEEESSTTHHHHHH
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC-ceEEEEEec-CCCCCcceEEEEEeCCHHHHHHHH
Confidence 9999999988754 78999999999999999999999999 999999998 678999999999999999999999
Q ss_pred HHhcCCcccCCCCCceeeecC
Q 019068 243 QKMTNPNFKLGTNAPTVSWAD 263 (346)
Q Consensus 243 ~~l~~~~~~~~~~~~~v~~~~ 263 (346)
..|++. .+.|+.+.|.|+.
T Consensus 154 ~~l~g~--~~~g~~l~V~~As 172 (172)
T 2g4b_A 154 AGLNGM--QLGDKKLLVQRAS 172 (172)
T ss_dssp HHHTTC--EETTEECEEEECC
T ss_pred HHcCCC--EECCeEEEEEeCC
Confidence 999984 4689999998863
No 24
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.4e-28 Score=200.96 Aligned_cols=152 Identities=17% Similarity=0.326 Sum_probs=135.7
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhh----C-------CCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCC
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEV----G-------PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 248 (346)
+.++|||+|||+.+++++|+.+|+.+ | . |..+.+.+. +|||||+|.+.++|..|+ .+++.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~-v~~~~~~~~-------~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP-VLAVQINQD-------KNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCS-EEEEEEETT-------TTEEEEEESSHHHHHHHG-GGTTC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCc-eeeeEecCC-------CCEEEEEeCCHHHHHHHH-HhCCc
Confidence 45789999999999999999999999 6 4 666766554 899999999999999999 78774
Q ss_pred cccCCCCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHH
Q 019068 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (346)
Q Consensus 249 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 328 (346)
.+.|+.+.+.++....... ..++|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.+
T Consensus 74 --~~~g~~i~v~~~~~~~~~~----~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 74 --IFQGQSLKIRRPHDYQPLP----GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp --EETTEECEEECCSSCCCCT----TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred --EecCceeeecCCcccCCCC----CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 4789999999876654332 3489999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHhcCcccCCCC
Q 019068 329 SAMKALKNTEKYELDGDH 346 (346)
Q Consensus 329 ~A~~Al~~lng~~i~gr~ 346 (346)
+|.+|+..|||..|+||+
T Consensus 148 ~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp HHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHcCCCEECCeE
Confidence 999999999999999974
No 25
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=7.2e-28 Score=210.03 Aligned_cols=159 Identities=23% Similarity=0.379 Sum_probs=146.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+++|+++|+.+|++||.|..|.+.+ ++|||||+|.+.++|.+|+..++|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4567999999999999999999999999999999964 4899999999999999999999999999999999999
Q ss_pred CccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCccc--CCCCC
Q 019068 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK--LGTNA 256 (346)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~--~~~~~ 256 (346)
.+..+|||+|||+.+++++|+.+|+.||. |..+.++++ .+|.++|||||+|.+.++|.+|+..+++..+. ..+++
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGP-VEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCC-eEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 99999999999999999999999999999 999999998 58999999999999999999999999654433 34788
Q ss_pred ceeeecCCCC
Q 019068 257 PTVSWADPRN 266 (346)
Q Consensus 257 ~~v~~~~~~~ 266 (346)
+.|.++.+..
T Consensus 171 i~v~~~~~~~ 180 (261)
T 3sde_A 171 VIVEPMEQFD 180 (261)
T ss_dssp CEEEECCCEE
T ss_pred EEEeeccccC
Confidence 9999887654
No 26
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=9.8e-28 Score=211.99 Aligned_cols=164 Identities=18% Similarity=0.356 Sum_probs=152.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
+..++|||+|||+.+++++|+.+|++||.|..++++.+..+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred Ccc---------ccceecCCCCCC-CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCC
Q 019068 179 QAK---------YRLFIGNIPRNW-GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (346)
Q Consensus 179 ~~~---------~~l~v~~l~~~~-~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 248 (346)
.+. ++|||+|||+.+ ++++|+.+|+.||. |..++++++ .+|.++|||||.|.+.++|.+|+..|++.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACG--QDGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEEC--SSCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEEC--CCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 754 579999999995 99999999999999 999999998 37899999999999999999999999985
Q ss_pred cccCCCCCceeeecCCCCC
Q 019068 249 NFKLGTNAPTVSWADPRNV 267 (346)
Q Consensus 249 ~~~~~~~~~~v~~~~~~~~ 267 (346)
. +.|+.+.|.|+.+...
T Consensus 250 ~--~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 250 S--LGGSHLRVSFCAPGPP 266 (284)
T ss_dssp E--ETTEECEEEECCSSSC
T ss_pred c--cCCeEEEEEEecCCCc
Confidence 5 6899999999987654
No 27
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=2.8e-27 Score=209.94 Aligned_cols=161 Identities=21% Similarity=0.351 Sum_probs=141.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..++|||+|||+.+++++|+.+|++|| .|..|+++.+.. |.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999998865 789999999999999999999999999999999999987
Q ss_pred Ccc-------------ccceecCCCCC-CCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHH
Q 019068 179 QAK-------------YRLFIGNIPRN-WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK 244 (346)
Q Consensus 179 ~~~-------------~~l~v~~l~~~-~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 244 (346)
.+. ++|||+|||+. +++++|+.+|+.||. |..++++++...+|.++|||||.|.+.++|.+|+ .
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 542 57999999999 999999999999999 9999999883335999999999999999999999 9
Q ss_pred hcCCcccCCCCCceeeecCCC
Q 019068 245 MTNPNFKLGTNAPTVSWADPR 265 (346)
Q Consensus 245 l~~~~~~~~~~~~~v~~~~~~ 265 (346)
|++. .+.|+.+.|.|+.++
T Consensus 273 l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GTTE--EETTEEEEEEECCCC
T ss_pred hcCC--EECCcEEEEEEecCC
Confidence 9985 478999999999875
No 28
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.7e-26 Score=201.30 Aligned_cols=140 Identities=29% Similarity=0.479 Sum_probs=128.2
Q ss_pred ccccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCcee
Q 019068 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (346)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 259 (346)
+.++|||+|||+.+++++|+.+|+.+|. |..+.+.++ +|||||.|.+.++|..|+..+++.. +.|+.+.|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~--i~g~~l~v 90 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGE-PSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTI--LKSRPLRI 90 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCC-CSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCE--ETTEECEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcE--ECCceeEe
Confidence 3468999999999999999999999999 999999765 8999999999999999999999854 68999999
Q ss_pred eecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
.++.+. ++|||+|||..+|+++|+++|+.||.|..|.++++ .++.++|||||+|.+.++|.+|+..|||
T Consensus 91 ~~a~~~----------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 91 RFATHG----------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp EECCCS----------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eecccC----------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 998653 69999999999999999999999999999999999 4677799999999999999999999954
Q ss_pred c
Q 019068 340 Y 340 (346)
Q Consensus 340 ~ 340 (346)
.
T Consensus 160 ~ 160 (261)
T 3sde_A 160 G 160 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=2.7e-22 Score=152.11 Aligned_cols=97 Identities=19% Similarity=0.376 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..+++|||+|||+++++++|+.+|++||.|.+|+|+++. +.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356789999999999999999999999999999999985 458999999999999999999999999999999999988
Q ss_pred Ccc--------------ccceecCCCCCCCHHH
Q 019068 179 QAK--------------YRLFIGNIPRNWGSED 197 (346)
Q Consensus 179 ~~~--------------~~l~v~~l~~~~~~~~ 197 (346)
.++ .+|||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 643 4699999999988753
No 30
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=143.46 Aligned_cols=82 Identities=26% Similarity=0.534 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
-.+++|||+|||+++|+++|+.+|++||.|.+|++++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc
Q 019068 179 QA 180 (346)
Q Consensus 179 ~~ 180 (346)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 31
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=3.7e-21 Score=154.61 Aligned_cols=124 Identities=22% Similarity=0.338 Sum_probs=99.8
Q ss_pred CCccEEEEEeCChhHHHHHHHHhcCCc-----ccCCCCCceeeecCCCC--CCCcccccceEEEEcCCCcccCHHHHHHH
Q 019068 223 NNRGFAFIEYHNHKCAEYSRQKMTNPN-----FKLGTNAPTVSWADPRN--VDSSGASQVKAVYVKNLPRNVTQDQLKKL 295 (346)
Q Consensus 223 ~~~g~~~v~f~~~~~a~~a~~~l~~~~-----~~~~~~~~~v~~~~~~~--~~~~~~~~~~~l~V~nLp~~~t~~~L~~~ 295 (346)
.++|||||+|.+.+.|.+|+..+++.. +...+............ .........++|||+|||..+++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 589999999999999999998776421 12222233322222211 12233445689999999999999999999
Q ss_pred hhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 296 F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|||..|+||+
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 999999999999999988999999999999999999999999999999984
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=136.82 Aligned_cols=83 Identities=31% Similarity=0.517 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh-cCccccCceeEEeec
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCSTS 178 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~ 178 (346)
+++|||+|||+++|+++|+.+|++|| .|.+|++++++.+|.++|||||+|.+.++|.+|++.+ ++..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57899999999999999999999999 8999999999999999999999999999999999876 456799999999999
Q ss_pred Ccccc
Q 019068 179 QAKYR 183 (346)
Q Consensus 179 ~~~~~ 183 (346)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87543
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=136.00 Aligned_cols=84 Identities=25% Similarity=0.332 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
++..++|||+|||+++++++|+.+|++||.|.+|++++++.||.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8743
No 34
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=4.9e-19 Score=142.13 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=109.6
Q ss_pred EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe-------e------------cCccccceecCCC
Q 019068 130 EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS-------T------------SQAKYRLFIGNIP 190 (346)
Q Consensus 130 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~-------~------------~~~~~~l~v~~l~ 190 (346)
++.++.+. ..++|||||+|.+.++|.+|+..+++.......+.+. . ..+..+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 45666665 3689999999999999999998877533222222211 1 1234789999999
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCC
Q 019068 191 RNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269 (346)
Q Consensus 191 ~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 269 (346)
+.+++++|+.+|+.||. |..++++++ +.+|.++|||||+|.+.++|..|+..|++. .+.|+.+.|.++.+.....
T Consensus 80 ~~~~~~~l~~~F~~~G~-v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR-VGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHHHHSC-EEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHHhcCC-eEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCCC
Confidence 99999999999999999 999999998 778999999999999999999999999984 4789999999998765443
No 35
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.4e-19 Score=137.27 Aligned_cols=106 Identities=18% Similarity=0.319 Sum_probs=96.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.+..+++|||+|||+.+++++|+.+|++||.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456889999999999999999999999999999999976 4569999999999999999999999999999999999
Q ss_pred ecCccccceecCCCCCCCHHHHHHHHHhhCC
Q 019068 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP 207 (346)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 207 (346)
++.+.... .+++...++++|..+|+.+|-
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 99875543 778888889999999999986
No 36
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=4.9e-20 Score=135.47 Aligned_cols=72 Identities=25% Similarity=0.402 Sum_probs=69.4
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+|+++|+++|++||.|.+++|++++.++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 478999999999999999999999999999999999999999999999999999999999999999999974
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=1.8e-19 Score=143.31 Aligned_cols=116 Identities=21% Similarity=0.195 Sum_probs=99.5
Q ss_pred CCccEEEEEeCChhHHHHHHHHh-cCCcccCCCCCceeeecCCCC------------CCCcccccceEEEEcCCCcccCH
Q 019068 223 NNRGFAFIEYHNHKCAEYSRQKM-TNPNFKLGTNAPTVSWADPRN------------VDSSGASQVKAVYVKNLPRNVTQ 289 (346)
Q Consensus 223 ~~~g~~~v~f~~~~~a~~a~~~l-~~~~~~~~~~~~~v~~~~~~~------------~~~~~~~~~~~l~V~nLp~~~t~ 289 (346)
..+|+++++|.+.+.|.+|+..+ ++. .+.| .+.+.++.... .........++|||+|||..+++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~--~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDN--GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHH--TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccceeeecCHHHHHHHHHHHhcCC--CCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 55899999999999999999988 663 3566 77777766421 22334455699999999999999
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 999999999999999999987 3799999999999999999999999999985
No 38
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-20 Score=134.00 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCC--eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCc----cccCce
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGE--VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKK 172 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~~ 172 (346)
..-.||||+|||+.+|+++|+++|++||. |.+|++++++.||.++|||||+|.+.++|.+|++.|||. .+.|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 35679999999999999999999999995 679999999999999999999999999999999999986 489999
Q ss_pred eEEeecCc
Q 019068 173 IRCSTSQA 180 (346)
Q Consensus 173 l~v~~~~~ 180 (346)
|.|.+|++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 39
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=5.1e-19 Score=125.90 Aligned_cols=81 Identities=16% Similarity=0.395 Sum_probs=77.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
+.+|||+|||+.+++++|+.+|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred c
Q 019068 181 K 181 (346)
Q Consensus 181 ~ 181 (346)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=4.2e-19 Score=126.98 Aligned_cols=82 Identities=28% Similarity=0.557 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45788999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q 019068 178 SQ 179 (346)
Q Consensus 178 ~~ 179 (346)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=127.32 Aligned_cols=83 Identities=22% Similarity=0.418 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=2.9e-19 Score=130.92 Aligned_cols=85 Identities=28% Similarity=0.591 Sum_probs=80.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
+++|||+|||..+++++|+.+|++||.|..++++.++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 67999999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred cccce
Q 019068 181 KYRLF 185 (346)
Q Consensus 181 ~~~l~ 185 (346)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 65543
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=128.12 Aligned_cols=85 Identities=27% Similarity=0.593 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+..+++|||+|||+.+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35688999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCccc
Q 019068 178 SQAKY 182 (346)
Q Consensus 178 ~~~~~ 182 (346)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98643
No 44
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=128.78 Aligned_cols=86 Identities=26% Similarity=0.399 Sum_probs=81.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCcccc
Q 019068 178 SQAKYR 183 (346)
Q Consensus 178 ~~~~~~ 183 (346)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987543
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=2.2e-19 Score=129.81 Aligned_cols=80 Identities=24% Similarity=0.464 Sum_probs=72.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccC--CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.+|||+|||+++++++|+.+|++|| .|.+++++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 019068 180 AK 181 (346)
Q Consensus 180 ~~ 181 (346)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 46
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.6e-19 Score=133.22 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC-ce
Q 019068 100 HGSEVYIGGIPH------DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KK 172 (346)
Q Consensus 100 ~~~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~ 172 (346)
.+++|||+|||+ ++++++|+.+|++||.|.+|++++++.||.++|||||+|.+.++|.+|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eEEeecCcc
Q 019068 173 IRCSTSQAK 181 (346)
Q Consensus 173 l~v~~~~~~ 181 (346)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=7.2e-19 Score=131.51 Aligned_cols=85 Identities=24% Similarity=0.535 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|++||.|..|.+++++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98764
No 48
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=127.76 Aligned_cols=84 Identities=31% Similarity=0.514 Sum_probs=79.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.+...++|||+|||+.+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCc
Q 019068 177 TSQA 180 (346)
Q Consensus 177 ~~~~ 180 (346)
++.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 49
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=127.70 Aligned_cols=85 Identities=26% Similarity=0.623 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|.+|+. |++..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999998 99999999999999
Q ss_pred ecCccc
Q 019068 177 TSQAKY 182 (346)
Q Consensus 177 ~~~~~~ 182 (346)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 998653
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=127.04 Aligned_cols=82 Identities=32% Similarity=0.562 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
++..++|||+|||+.+++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred cC
Q 019068 178 SQ 179 (346)
Q Consensus 178 ~~ 179 (346)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 51
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=133.04 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=70.0
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.++|||+|||..+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999974
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=127.57 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=79.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEE--------EEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 019068 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (346)
Q Consensus 96 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 167 (346)
..+...++|||+|||+++++++|+.+|++||.|.. ++++.++.+|.++|||||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCceeEEeecC
Q 019068 168 FKGKKIRCSTSQ 179 (346)
Q Consensus 168 ~~g~~l~v~~~~ 179 (346)
+.|+.|+|.++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=127.30 Aligned_cols=83 Identities=24% Similarity=0.560 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|+++.+. +|.++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9764
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=128.96 Aligned_cols=86 Identities=27% Similarity=0.428 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCccc
Q 019068 177 TSQAKY 182 (346)
Q Consensus 177 ~~~~~~ 182 (346)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998654
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.5e-19 Score=128.14 Aligned_cols=83 Identities=25% Similarity=0.474 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEE-EEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
..+++|||+|||+.+++++|+.+|++||.|..+ ++++++.+|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8764
No 56
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=129.60 Aligned_cols=84 Identities=20% Similarity=0.440 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9864
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=128.67 Aligned_cols=85 Identities=26% Similarity=0.612 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34568899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.+.
T Consensus 88 ~a~~~ 92 (102)
T 1x5s_A 88 QAGKS 92 (102)
T ss_dssp EEECC
T ss_pred ECCCC
Confidence 98754
No 58
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=129.27 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..+++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 753
No 59
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=129.08 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 9754
No 60
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=2.7e-18 Score=130.16 Aligned_cols=85 Identities=22% Similarity=0.447 Sum_probs=80.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|++++++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCccc
Q 019068 178 SQAKY 182 (346)
Q Consensus 178 ~~~~~ 182 (346)
+.++.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98653
No 61
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=129.55 Aligned_cols=85 Identities=24% Similarity=0.447 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc------CccccC
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN------NTEFKG 170 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~g 170 (346)
.....++|||+|||+.+++++|+.+|++||.|..|++++++.+|.++|||||+|.+.++|.+|+..|+ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceeEEeecCcc
Q 019068 171 KKIRCSTSQAK 181 (346)
Q Consensus 171 ~~l~v~~~~~~ 181 (346)
+.|.|.++.++
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99999998764
No 62
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=130.03 Aligned_cols=71 Identities=14% Similarity=0.298 Sum_probs=66.8
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCc--EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCc----ccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~----~i~gr~ 346 (346)
+||||+|||+.+|+++|+++|++||. |.+|++++++.++.++|||||+|.+.++|.+|++.|||. .|+||+
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 79999999999999999999999995 669999999999999999999999999999999999997 488874
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=130.33 Aligned_cols=71 Identities=20% Similarity=0.407 Sum_probs=66.4
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccC-cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc-CcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-KYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln-g~~i~gr~ 346 (346)
++|||+|||..+|+++|+++|++|| .|.+|+|++++.++.++|||||+|.+.++|.+|+..++ +..|+||+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 7999999999999999999999999 79999999999999999999999999999999999874 56788874
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=3.1e-18 Score=122.99 Aligned_cols=81 Identities=23% Similarity=0.559 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|++||.|..+++++++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34568899999999999999999999999999999999999999999999999999999999995 68889999999998
Q ss_pred ec
Q 019068 177 TS 178 (346)
Q Consensus 177 ~~ 178 (346)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 65
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=128.57 Aligned_cols=79 Identities=24% Similarity=0.443 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+++|+++|+.+|++||.|.+|++++++. |.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3467999999999999999999999999999999999987 9999999999999999999997 9999999999999876
Q ss_pred C
Q 019068 179 Q 179 (346)
Q Consensus 179 ~ 179 (346)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 5
No 66
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=128.98 Aligned_cols=84 Identities=27% Similarity=0.540 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45688999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 67
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=2.8e-18 Score=123.73 Aligned_cols=80 Identities=25% Similarity=0.524 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
.++|||+|||+.+++++|+.+|++||.|..++++.++.+|.++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999999875
Q ss_pred c
Q 019068 181 K 181 (346)
Q Consensus 181 ~ 181 (346)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2.1e-18 Score=130.73 Aligned_cols=84 Identities=24% Similarity=0.473 Sum_probs=79.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+.+++++|+.+|++||.|..|++++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred Cccc
Q 019068 179 QAKY 182 (346)
Q Consensus 179 ~~~~ 182 (346)
.++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8653
No 69
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=127.25 Aligned_cols=83 Identities=24% Similarity=0.441 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCC---CCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD---SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
...++|||+|||+.+++++|+.+|++||.|..|.++.++. ++.++|||||+|.+.++|.+|+..||+..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.+.
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 999764
No 70
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-18 Score=127.64 Aligned_cols=86 Identities=24% Similarity=0.492 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeC-CCCCCCcceEEEEecCHHHHHHHHHHh-cCccccCceeEE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRC 175 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v 175 (346)
....++|||+|||+.+++++|+.+|++||.|..|+++.+ ..++.++|||||+|.+.++|.+|+..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346789999999999999999999999999999999998 788999999999999999999999999 999999999999
Q ss_pred eecCcccc
Q 019068 176 STSQAKYR 183 (346)
Q Consensus 176 ~~~~~~~~ 183 (346)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99986543
No 71
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=126.61 Aligned_cols=84 Identities=18% Similarity=0.388 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeE-EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCce----
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT-EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK---- 172 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~---- 172 (346)
...+++|||+|||+.+++++|+.+|++||.|. .+++++++.+|.++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44688999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eEEeecCcc
Q 019068 173 IRCSTSQAK 181 (346)
Q Consensus 173 l~v~~~~~~ 181 (346)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998753
No 72
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=2.7e-18 Score=129.08 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..+++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
.++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 753
No 73
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=127.72 Aligned_cols=84 Identities=27% Similarity=0.437 Sum_probs=77.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCcc
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (346)
++|||+|||+++++++|+.+|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999886 6899999999999999999999999999999999998643
Q ss_pred ----------------ccceecCCC
Q 019068 182 ----------------YRLFIGNIP 190 (346)
Q Consensus 182 ----------------~~l~v~~l~ 190 (346)
.+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 468888875
No 74
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=1e-18 Score=136.00 Aligned_cols=113 Identities=20% Similarity=0.301 Sum_probs=73.7
Q ss_pred EEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCCcccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEE
Q 019068 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306 (346)
Q Consensus 227 ~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 306 (346)
+.|+.|.+...+..|+..+++.... ++ ..+.+. .++......++|||+|||..+++++|+++|+.||.|..|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~--g~-~~~~~~----~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~ 78 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM--GR-GSMSYG----RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY 78 (135)
T ss_dssp --------------------------------CCSC----CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE
T ss_pred cccccccCCCchhhhhhhccCCCCC--CC-CCCCcC----CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 5677777777778888777764321 11 122222 2233445568999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 307 i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
|+.++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 9999988889999999999999999999999999999985
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=128.86 Aligned_cols=83 Identities=29% Similarity=0.576 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+++++++|+.+|++||.|..|.++.+. +|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 83 a~~~ 86 (116)
T 2fy1_A 83 AKKP 86 (116)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 76
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=1.1e-18 Score=128.59 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=69.1
Q ss_pred ceEEEEcCCCc------ccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC-CC
Q 019068 275 VKAVYVKNLPR------NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-DH 346 (346)
Q Consensus 275 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g-r~ 346 (346)
.++|||+|||. .+++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|||..|.| |+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 47999999999 99999999999999999999999999989999999999999999999999999999999 63
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=3.1e-18 Score=127.84 Aligned_cols=85 Identities=25% Similarity=0.451 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc---cCceeE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIR 174 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~l~ 174 (346)
....++|||+|||+.+++++|+.+|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EeecCccc
Q 019068 175 CSTSQAKY 182 (346)
Q Consensus 175 v~~~~~~~ 182 (346)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998653
No 78
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=2.8e-18 Score=132.41 Aligned_cols=86 Identities=33% Similarity=0.510 Sum_probs=80.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 96 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
..+...++|||+|||+.+++++|+.+|++||.|..|++++++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998764
No 79
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=5.7e-18 Score=126.13 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC---ceeEE
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG---KKIRC 175 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g---~~l~v 175 (346)
...++|||+|||+.+++++|+.+|++||.|..|+++.++ +|.++|||||+|.+.++|.+|+..||+..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 458899999999999999999999999999999999997 79999999999999999999999999999998 99999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.+.
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 999764
No 80
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=123.69 Aligned_cols=82 Identities=20% Similarity=0.436 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCC-CcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE-NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..++|||+|||+++++++|+.+|++||.|..+.++.+..++. ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999877666 8999999999999999999999999999999999998
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.8e-19 Score=125.27 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+..+++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999877
Q ss_pred cC
Q 019068 178 SQ 179 (346)
Q Consensus 178 ~~ 179 (346)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 82
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=124.24 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|+++.++. |.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34578999999999999999999999999999999999875 89999999999999999999999999999999999998
Q ss_pred cCc
Q 019068 178 SQA 180 (346)
Q Consensus 178 ~~~ 180 (346)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 83
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=3.9e-18 Score=137.74 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
...+++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8753
No 84
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=136.07 Aligned_cols=82 Identities=21% Similarity=0.416 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccC--CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
..++|||+|||+.+++++|+.+|++|| .|..|+++.++.+|.++|||||+|.+.++|.+||..|+|..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=126.04 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|.++.+ +|.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346889999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 90 a~~~ 93 (103)
T 2d9p_A 90 AQRK 93 (103)
T ss_dssp CSSC
T ss_pred eccc
Confidence 9864
No 86
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=7.9e-18 Score=125.80 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=77.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|++||.|..|.++.+. +|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44568899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecC
Q 019068 177 TSQ 179 (346)
Q Consensus 177 ~~~ 179 (346)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 87
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=2.2e-18 Score=123.14 Aligned_cols=73 Identities=26% Similarity=0.397 Sum_probs=69.5
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.++|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4489999999999999999999999999999999999888888999999999999999999999999999974
No 88
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=124.63 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc--CccccCceeE
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~ 174 (346)
.+...++|||+|||+++++++|+.+|++||.|.+|+++++ +|||||+|.+.++|.+|+..|+ +..+.|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3557889999999999999999999999999999999874 7999999999999999999886 4789999999
Q ss_pred EeecCcc
Q 019068 175 CSTSQAK 181 (346)
Q Consensus 175 v~~~~~~ 181 (346)
|.++.++
T Consensus 86 V~~A~~~ 92 (105)
T 1sjq_A 86 IQFSNHK 92 (105)
T ss_dssp BCCCSSS
T ss_pred EEEcCCC
Confidence 9999754
No 89
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.9e-18 Score=120.39 Aligned_cols=75 Identities=23% Similarity=0.628 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
+|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999997 9999999999999875
No 90
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=125.84 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=67.2
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..++|||+|||..+|+++|+++|++||.|.+|+|++++. +.++|||||+|.+.++|.+|+. +||..|+||+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 348999999999999999999999999999999999987 7789999999999999999999 9999999985
No 91
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=5.5e-18 Score=118.56 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.+..|||+||++.+++++|+.+|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 69999999999999999999999999999999998874
No 92
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=128.26 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeE--------EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 169 (346)
....++|||+|||+.+++++|+.+|++||.|. .|+++.++.+|.++|||||+|.+.++|.+|+..||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CceeEEeecCccc
Q 019068 170 GKKIRCSTSQAKY 182 (346)
Q Consensus 170 g~~l~v~~~~~~~ 182 (346)
|+.|+|.++.++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998643
No 93
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=3.7e-18 Score=129.99 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+++++++|+.+|++||.|..|++++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred cC
Q 019068 178 SQ 179 (346)
Q Consensus 178 ~~ 179 (346)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=125.99 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHc-cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc-ccCceeEE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIRC 175 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~v 175 (346)
+...++|||+|||+.+++++|+.+|++ ||.|..|+++.+. +|.++|||||+|.+.++|.+|+..|++.. +.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.++
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 998754
No 95
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.5e-18 Score=124.05 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=70.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999974
No 96
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=6.6e-18 Score=125.31 Aligned_cols=82 Identities=20% Similarity=0.506 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++|| |..|++++++.+|.++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8764
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=126.94 Aligned_cols=82 Identities=28% Similarity=0.616 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999988
Q ss_pred cc
Q 019068 180 AK 181 (346)
Q Consensus 180 ~~ 181 (346)
+.
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 98
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=9.6e-18 Score=121.79 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc--ccCceeEE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIRC 175 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v 175 (346)
.+.+++|||+|||+++++++|+.+|++||.|.++++++ .+|+|||+|.+.++|.+|+..|++.. +.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34688999999999999999999999999999999975 47999999999999999999999876 78999999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999753
No 99
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=123.48 Aligned_cols=76 Identities=26% Similarity=0.454 Sum_probs=71.2
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..++.++|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3445589999999999999999999999999999999999998888999999999999999999999999999974
No 100
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=122.74 Aligned_cols=73 Identities=29% Similarity=0.525 Sum_probs=69.8
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+++|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3489999999999999999999999999999999999988889999999999999999999999999999985
No 101
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=9.6e-18 Score=121.73 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..++++++ +|.++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446789999999999999999999999999999999984 689999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8764
No 102
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=2.7e-18 Score=145.79 Aligned_cols=81 Identities=22% Similarity=0.452 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccC--CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
..++|||+|||+.+++++|+.+|++|| .|..|+|++++.+|+++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCc
Q 019068 178 SQA 180 (346)
Q Consensus 178 ~~~ 180 (346)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 874
No 103
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=125.33 Aligned_cols=76 Identities=26% Similarity=0.371 Sum_probs=71.3
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.....++|||+|||..+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3445589999999999999999999999999999999999988889999999999999999999999999999974
No 104
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.5e-18 Score=125.01 Aligned_cols=75 Identities=28% Similarity=0.465 Sum_probs=70.8
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 344589999999999999999999999999999999999998889999999999999999999999999999985
No 105
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=126.67 Aligned_cols=84 Identities=21% Similarity=0.498 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999987 99999999999999
Q ss_pred cCccc
Q 019068 178 SQAKY 182 (346)
Q Consensus 178 ~~~~~ 182 (346)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87643
No 106
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.8e-18 Score=125.47 Aligned_cols=81 Identities=21% Similarity=0.518 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCC-CCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
...++|||+|||+.+++++|+.+|++|| |..|++++++.+ |.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9864
No 107
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=7e-18 Score=126.35 Aligned_cols=86 Identities=24% Similarity=0.491 Sum_probs=75.0
Q ss_pred hCCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 95 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
...+...++|||+|||+.+++++|+.+|++||.|..|++++++.+|.++|||||+|.+.++|.+|+..+ +..+.|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 344456889999999999999999999999999999999999999999999999999999999999865 5999999999
Q ss_pred EeecCcc
Q 019068 175 CSTSQAK 181 (346)
Q Consensus 175 v~~~~~~ 181 (346)
|.++.++
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998754
No 108
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=4.2e-18 Score=128.92 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=72.7
Q ss_pred cccceecCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceee
Q 019068 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (346)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 260 (346)
..+|||+|||+.+++++|+.+|+.||. |..++++++ . +.++|||||+|.+.++|.+|+..|++. .+.|+.+.|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~-v~~v~i~~d-~--~~~kg~afV~f~~~~~A~~Ai~~l~~~--~~~g~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGN-ILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVG 78 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEE-T--TEEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCC-EEEEEEeec-C--CCCCceEEEEECCHHHHHHHHHHcCCC--EECCEEEEEE
Confidence 357999999999999999999999999 999999988 3 347999999999999999999999985 4789999999
Q ss_pred ecCCCCCCC----cccccceEEEEcCCCcccCHHH
Q 019068 261 WADPRNVDS----SGASQVKAVYVKNLPRNVTQDQ 291 (346)
Q Consensus 261 ~~~~~~~~~----~~~~~~~~l~V~nLp~~~t~~~ 291 (346)
++.++.... ......++|||+|||+.+|++-
T Consensus 79 ~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 79 RFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ESSCCCC----------------------------
T ss_pred ECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 988765433 2233346899999999998763
No 109
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.3e-18 Score=124.34 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=71.8
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....+.++|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34455689999999999999999999999999999999999988888999999999999999999999999999974
No 110
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=122.45 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=69.0
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.++|||+|||..+++++|+++|+.||.|..+++++++.++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3489999999999999999999999999999999999888888999999999999999999999999999974
No 111
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=127.10 Aligned_cols=82 Identities=20% Similarity=0.500 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|++++++.++.++|||||+|.+.++|.+|+..+++ .+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred cCc
Q 019068 178 SQA 180 (346)
Q Consensus 178 ~~~ 180 (346)
+.+
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 864
No 112
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=122.54 Aligned_cols=73 Identities=23% Similarity=0.454 Sum_probs=69.2
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+. |||..|+||+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 445899999999999999999999999999999999999888889999999999999999999 9999999974
No 113
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=6.1e-18 Score=123.78 Aligned_cols=72 Identities=19% Similarity=0.380 Sum_probs=69.0
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+++|||+|||..+++++|+++|+.||.|..++|++++.++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 379999999999999999999999999999999999988889999999999999999999999999999973
No 114
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=4.2e-18 Score=121.09 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=68.5
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 79999999999999999999999999999999999888889999999999999999999999999999974
No 115
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=122.74 Aligned_cols=82 Identities=18% Similarity=0.386 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|+++++.. .++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 44678999999999999999999999999999999999853 4789999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9864
No 116
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=8.4e-18 Score=129.56 Aligned_cols=84 Identities=20% Similarity=0.415 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
...+++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8753
No 117
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=1.8e-17 Score=131.74 Aligned_cols=117 Identities=18% Similarity=0.328 Sum_probs=106.3
Q ss_pred CCCcceEEEEecCHHHHHHHHHHh-cCccccCceeEEeecCc----------------------cccceecCCCCCCCHH
Q 019068 140 SENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCSTSQA----------------------KYRLFIGNIPRNWGSE 196 (346)
Q Consensus 140 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~----------------------~~~l~v~~l~~~~~~~ 196 (346)
...+|+++|+|.+.+.|.+|+..+ ||..+.| .|.+.++.. .++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999999 9999999 999987653 2689999999999999
Q ss_pred HHHHHHHhhCCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCCceeeecCCCC
Q 019068 197 DLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266 (346)
Q Consensus 197 ~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~ 266 (346)
+|+.+|+.||. |..++++++ ++|||||+|.+.++|..|+..|++. .+.|+.+.|.|+.++.
T Consensus 89 ~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGP-LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGR--TLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSC-EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSS--CSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCC-EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEcCCCC
Confidence 99999999999 999999876 5899999999999999999999985 4789999999987753
No 118
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=121.99 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 99 PHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
...++|||+|||+.+++++|+ .+|++||.|.+|+++.++.+ +|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 457899999999999999999 99999999999999998754 88999999999999999999999999999999
Q ss_pred EeecCcc
Q 019068 175 CSTSQAK 181 (346)
Q Consensus 175 v~~~~~~ 181 (346)
|.++.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9999764
No 119
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=122.48 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=69.5
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++++|||+|||..+++++|+++|++||.|..++|++++.++.++|||||+|.+.++|.+|+..|||..|.||.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 3489999999999999999999999999999999999988889999999999999999999999999999874
No 120
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=127.55 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
...+++|||+|||+.+++++|+.+|++||.|..|.++.+. +|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCcccc
Q 019068 178 SQAKYR 183 (346)
Q Consensus 178 ~~~~~~ 183 (346)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 986443
No 121
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=120.07 Aligned_cols=68 Identities=26% Similarity=0.499 Sum_probs=63.7
Q ss_pred eEEEEcCCCccc------CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
++|||+|||..+ ++++|+++|++||.|..++|+ +.++.++|||||+|.+.++|.+|+..|||..|+||
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 699999999999 789999999999999999998 35667799999999999999999999999999998
No 122
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.7e-18 Score=125.49 Aligned_cols=82 Identities=20% Similarity=0.301 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
+..++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred Cc
Q 019068 179 QA 180 (346)
Q Consensus 179 ~~ 180 (346)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 123
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=122.38 Aligned_cols=83 Identities=30% Similarity=0.507 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|++||.|..|+++.+.. .++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999998863 489999999999999999999999999999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.++
T Consensus 89 ~a~~~ 93 (103)
T 2cq3_A 89 NATAR 93 (103)
T ss_dssp ECCSS
T ss_pred EcccC
Confidence 99864
No 124
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-18 Score=120.30 Aligned_cols=76 Identities=26% Similarity=0.531 Sum_probs=73.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
++|||+|||+++++++|+.+|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999888 9999999999876
No 125
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=124.08 Aligned_cols=75 Identities=27% Similarity=0.441 Sum_probs=70.7
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 344589999999999999999999999999999999999988888999999999999999999999999999985
No 126
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=130.83 Aligned_cols=84 Identities=23% Similarity=0.449 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+...++|||+|||+.+++++|+.+|+.||.|..|++++++.+|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9864
No 127
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=7e-18 Score=124.20 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=71.6
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhhccCcEEE--------EEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
......++|||+|||..+++++|+++|+.||.|.. ++++.++.++.++|||||+|.+.++|.+|+..|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34445589999999999999999999999999999 9999999888899999999999999999999999999
Q ss_pred cCCCC
Q 019068 342 LDGDH 346 (346)
Q Consensus 342 i~gr~ 346 (346)
|.||+
T Consensus 88 ~~g~~ 92 (99)
T 2la6_A 88 FSGNP 92 (99)
T ss_dssp SSSSB
T ss_pred eCCcE
Confidence 99984
No 128
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=4.5e-18 Score=137.38 Aligned_cols=117 Identities=9% Similarity=0.117 Sum_probs=70.8
Q ss_pred EEeCChhHHHHHHHHhcCCcccCCCCCceeeecCC----------------CCCCCcccccceEEEEcCCCcccCHHHHH
Q 019068 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP----------------RNVDSSGASQVKAVYVKNLPRNVTQDQLK 293 (346)
Q Consensus 230 v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~----------------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 293 (346)
..|....++..++..+........|+.....+... ....+......++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 45666777777777777655554455444433211 11112233446899999999999999999
Q ss_pred HHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 294 KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 294 ~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 99999999999999999989888999999999999999999999999999973
No 129
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=1.7e-18 Score=125.10 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=66.2
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccC--cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+|||+|||..+++++|+++|+.|| .|.+++++.++.++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999985
No 130
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=8.1e-18 Score=125.75 Aligned_cols=75 Identities=29% Similarity=0.486 Sum_probs=70.8
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...+++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 444589999999999999999999999999999999999888888999999999999999999999999999985
No 131
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-18 Score=125.19 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45678999999999999999999999999999988988889999999999999999999999999999999999999998
Q ss_pred Cc
Q 019068 179 QA 180 (346)
Q Consensus 179 ~~ 180 (346)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 132
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=125.75 Aligned_cols=82 Identities=20% Similarity=0.512 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCC-CCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
....++|||+|||+++++++|+.+|++|| |.+|+++.+. .+|.++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34688999999999999999999999999 9999999987 68999999999999999999999 899999999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 133
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=123.56 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=70.6
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCC-CCCCCCCCEEEEEeCCHHHHHHHHHHh-cCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA-KPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Al~~l-ng~~i~gr~ 346 (346)
.....++|||+|||..+++++|+++|+.||.|..|+|+++ +.++.++|||||+|.+.++|.+|+..| ||..|.||+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 3445589999999999999999999999999999999999 778888999999999999999999999 999999974
No 134
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=124.17 Aligned_cols=81 Identities=22% Similarity=0.218 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCc--cccCceeEE
Q 019068 99 PHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRC 175 (346)
Q Consensus 99 ~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~g~~l~v 175 (346)
..+++|||+|||+ .+++++|+.+|++||.|.+|+++++ +|||||+|.+.++|.+|+..|++. .+.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4688999999999 9999999999999999999999864 589999999999999999988864 599999999
Q ss_pred eecCccccce
Q 019068 176 STSQAKYRLF 185 (346)
Q Consensus 176 ~~~~~~~~l~ 185 (346)
.++.....|.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x4d_A 87 HLSQKYKRIK 96 (102)
T ss_dssp EEECCCTTSS
T ss_pred EECCCCCCCC
Confidence 9998765543
No 135
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=124.51 Aligned_cols=75 Identities=13% Similarity=0.225 Sum_probs=70.8
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 344589999999999999999999999999999999999998888999999999999999999999999999974
No 136
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.7e-18 Score=127.70 Aligned_cols=80 Identities=30% Similarity=0.498 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
.++|||+|||+.+++++|+.+|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 579999999999999999999999999999999999999999999999999999999999 8999999999999999865
Q ss_pred c
Q 019068 181 K 181 (346)
Q Consensus 181 ~ 181 (346)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 137
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=119.78 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+...++|||+|||+++++++|+.+|++| .|..|+++++ .+|.++|||||+|.+.++|.+|+. ||+..+.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 789999999999999999999999 999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 138
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=132.38 Aligned_cols=83 Identities=17% Similarity=0.336 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEE--EEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCc----cccCce
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKK 172 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~~ 172 (346)
...++|||+|||+.+++++|+.+|++||.|.. |+|++++.+|.++|||||+|.+. +|.+|+..|||. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 35779999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred eEEeecCccc
Q 019068 173 IRCSTSQAKY 182 (346)
Q Consensus 173 l~v~~~~~~~ 182 (346)
|.|.++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998653
No 139
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=4.7e-18 Score=120.24 Aligned_cols=73 Identities=14% Similarity=0.332 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCc-ee
Q 019068 101 GSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KI 173 (346)
Q Consensus 101 ~~~l~v~nlp~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l 173 (346)
+++|||+|||+.+ ++++|+.+|++||.|..++++ +.+|.++|||||+|.+.++|.+|+..|||..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 779999999999999999987 35789999999999999999999999999999999 88
Q ss_pred EE
Q 019068 174 RC 175 (346)
Q Consensus 174 ~v 175 (346)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 140
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=2e-18 Score=124.81 Aligned_cols=80 Identities=29% Similarity=0.621 Sum_probs=74.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCcc
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 181 (346)
++|||+|||+.+++++|+.+|++||.|..+.+++++.+|.++|||||+|.+.+ |.+|+..|||..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999864
Q ss_pred c
Q 019068 182 Y 182 (346)
Q Consensus 182 ~ 182 (346)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 141
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=124.67 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCC-eEEEEEe-eCCCCCCCcceEEEEecCHHHHHHHHHHhc--CccccCcee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIM-KGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKI 173 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l 173 (346)
....++|||+|||+.+++++|+.+|.+||. |..+.++ .+..+|.++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeecCccc
Q 019068 174 RCSTSQAKY 182 (346)
Q Consensus 174 ~v~~~~~~~ 182 (346)
+|.++.+..
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998654
No 142
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.9e-17 Score=124.40 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=70.7
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+.+|+.||.|..+.|+.++.++.++|||||+|.+.++|.+|+..|||..|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 344589999999999999999999999999999999999988989999999999999999999999999999973
No 143
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=121.85 Aligned_cols=85 Identities=29% Similarity=0.506 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 44678999999999999999999999999999999975 379999999999999999999999999999999999
Q ss_pred cCccccceecC
Q 019068 178 SQAKYRLFIGN 188 (346)
Q Consensus 178 ~~~~~~l~v~~ 188 (346)
+.++..+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99988877764
No 144
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=123.95 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+.+++++|+.+|++||.|..|.++.++ +|.++|||||+|.+.++|.+|+..||+..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999987 5899999999999999999999999999999999999998
Q ss_pred Cc
Q 019068 179 QA 180 (346)
Q Consensus 179 ~~ 180 (346)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 145
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=124.28 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=70.7
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc------CcccCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE------KYELDGD 345 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln------g~~i~gr 345 (346)
....++|||+|||..+++++|+.+|..||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| |..|+||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3445899999999999999999999999999999999999988899999999999999999999999 9999997
Q ss_pred C
Q 019068 346 H 346 (346)
Q Consensus 346 ~ 346 (346)
+
T Consensus 92 ~ 92 (111)
T 1x4h_A 92 Q 92 (111)
T ss_dssp E
T ss_pred E
Confidence 4
No 146
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=2.9e-17 Score=131.41 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++..|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9753
No 147
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.1e-18 Score=124.60 Aligned_cols=75 Identities=27% Similarity=0.403 Sum_probs=70.5
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..+.++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 344589999999999999999999999999999999999988889999999999999999999999999999974
No 148
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.8e-18 Score=123.98 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=70.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEE-EEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT-KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..+++|||+|||..+++++|+++|++||.|. .++|++++.++.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 3458999999999999999999999999999 9999999988888999999999999999999999999999984
No 149
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=2.4e-17 Score=122.98 Aligned_cols=75 Identities=24% Similarity=0.403 Sum_probs=69.9
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc---CCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL---DGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i---~gr~ 346 (346)
....++|||+|||..+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..+ .||+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34458999999999999999999999999999999999999888999999999999999999999999987 7764
No 150
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=121.15 Aligned_cols=83 Identities=27% Similarity=0.518 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999999899999999999999999999997 57899999999999
Q ss_pred cCccc
Q 019068 178 SQAKY 182 (346)
Q Consensus 178 ~~~~~ 182 (346)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87643
No 151
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=123.44 Aligned_cols=79 Identities=13% Similarity=0.283 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCc-e
Q 019068 100 HGSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-K 172 (346)
Q Consensus 100 ~~~~l~v~nlp~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~ 172 (346)
.+++|||+|||+.+ ++++|+.+|++||.|..|.++ ..+|.++|||||+|.+.++|.+|+..|||..+.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 47899999999999 789999999999999999988 36799999999999999999999999999999998 9
Q ss_pred eEEeecCc
Q 019068 173 IRCSTSQA 180 (346)
Q Consensus 173 l~v~~~~~ 180 (346)
|+|.++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99999864
No 152
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=124.16 Aligned_cols=75 Identities=21% Similarity=0.405 Sum_probs=70.6
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 444699999999999999999999999999999999999888888999999999999999999999999999973
No 153
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=123.91 Aligned_cols=83 Identities=30% Similarity=0.510 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||..+++++|+.+|++||.|..|+++.+. +.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34468899999999999999999999999999999999885 4589999999999999999999999999999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 154
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=122.17 Aligned_cols=81 Identities=20% Similarity=0.441 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999664 56899999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 9764
No 155
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=122.55 Aligned_cols=74 Identities=14% Similarity=0.383 Sum_probs=68.8
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3445899999999999999999999999999999999998 7777999999999999999999999999999974
No 156
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=129.29 Aligned_cols=81 Identities=28% Similarity=0.558 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..+++++++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34688999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred c
Q 019068 178 S 178 (346)
Q Consensus 178 ~ 178 (346)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 157
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=2.3e-17 Score=127.28 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=71.4
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...+.++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|||..|+||+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3445589999999999999999999999999999999999998889999999999999999999999999999985
No 158
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=125.12 Aligned_cols=86 Identities=21% Similarity=0.362 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HHHHccCCeEEEEEeeCCCCC---CCcceEEEEecCHHHHHHHHHHhcCccccCce
Q 019068 99 PHGSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKDSS---ENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 172 (346)
...++|||+|||+.+++++|+ .+|++||.|..|.++++..++ .++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 457899999999999999999 999999999999999887644 56699999999999999999999999999999
Q ss_pred eEEeecCccccc
Q 019068 173 IRCSTSQAKYRL 184 (346)
Q Consensus 173 l~v~~~~~~~~l 184 (346)
|+|.++.++...
T Consensus 93 l~V~~a~~k~~~ 104 (111)
T 2cpi_A 93 LKASLGTTKYCS 104 (111)
T ss_dssp EEEESCCCCSCS
T ss_pred EEEEeccccccc
Confidence 999999877643
No 159
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=2e-17 Score=125.32 Aligned_cols=76 Identities=25% Similarity=0.359 Sum_probs=70.9
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.....++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|||..|+||+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3445699999999999999999999999999999999999888888999999999999999999999999999973
No 160
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=125.43 Aligned_cols=81 Identities=23% Similarity=0.515 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
.++|||+|||+.+++++|+.+|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999999999976 99999999999999986
Q ss_pred cc
Q 019068 181 KY 182 (346)
Q Consensus 181 ~~ 182 (346)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 161
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=125.17 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
...+++|||+|||+.+++++|+ .+|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999988754 57899999999999999999999999999999999
Q ss_pred EEeecCccc
Q 019068 174 RCSTSQAKY 182 (346)
Q Consensus 174 ~v~~~~~~~ 182 (346)
+|.++.++.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998654
No 162
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=2.5e-17 Score=126.55 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
.++|||+|||+.+++++|+.+|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999999889999999999999999999999 7999999999999999875
Q ss_pred c
Q 019068 181 K 181 (346)
Q Consensus 181 ~ 181 (346)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 163
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.8e-18 Score=126.70 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCe-EEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV-TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
+...++|||+|||+.+++++|+.+|++||.| ..|+|+.++ +|.++|||||+|.+.++|.+||.. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4467899999999999999999999999999 899999998 899999999999999999999975 9999999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98753
No 164
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.7e-17 Score=125.14 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=70.8
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 445699999999999999999999999999999999999988889999999999999999999999999999974
No 165
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=122.43 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEE-EEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE-VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
....++|||+|||+.+++++|+.+|++||.|.. |+|+.+ .+|+++|||||+|.+.++|.+||.. ++..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 346789999999999999999999999999987 888888 7899999999999999999999985 9999999999998
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.+.
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87653
No 166
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=122.81 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.+...++|||+|||+++++++|+++|++||.+ .|+|+.++ +|+++|||||+|.+.++|.+||. +|+..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999955 99999997 89999999999999999999994 89999999999998
Q ss_pred ecCc
Q 019068 177 TSQA 180 (346)
Q Consensus 177 ~~~~ 180 (346)
++.+
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8764
No 167
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.7e-18 Score=122.73 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=68.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEE-EeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+++|+.||.|..+ +|++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4899999999999999999999999999999 99999888888999999999999999999999999999974
No 168
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=7.4e-18 Score=117.37 Aligned_cols=75 Identities=21% Similarity=0.520 Sum_probs=71.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
+|||+|||+++++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999997 6999999999999764
No 169
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.1e-17 Score=116.43 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=66.3
Q ss_pred EEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|.+|+. |||..|+||+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 58999999999999999999999999999999999888899999999999999999998 9999999985
No 170
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=123.10 Aligned_cols=82 Identities=21% Similarity=0.451 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc--------cC
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--------KG 170 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--------~g 170 (346)
...++|||+|||+.+++++|+.+|++||.|..|+++.+. +|.++|||||+|.+.++|.+|+..|||..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 457899999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred ceeEEeecCcc
Q 019068 171 KKIRCSTSQAK 181 (346)
Q Consensus 171 ~~l~v~~~~~~ 181 (346)
+.|.|.++.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77888888753
No 171
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=1.6e-17 Score=116.26 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=62.2
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.-|+|+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.|||..|.||+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTT 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 37899999999999999999999999999999976 3799999999999999999999999999984
No 172
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=121.28 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=62.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC--cccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng--~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|++ ..|.||+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34489999999999999999999999999999999986 59999999999999999998864 7888874
No 173
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.3e-17 Score=129.21 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCC---eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
....++|||+|||+++|+++|+.+|++||. |..|++++++. |+++|||||+|.+.++|.+|+. +++..+.|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 446789999999999999999999999999 89999999987 9999999999999999999998 999999999999
Q ss_pred EeecCc
Q 019068 175 CSTSQA 180 (346)
Q Consensus 175 v~~~~~ 180 (346)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998864
No 174
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=4.3e-17 Score=121.31 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=66.7
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
...++|||+|||..+++++|+.+|+.||.|..|+|+++. ++.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 345899999999999999999999999999999999998 67779999999999999999999999999987
No 175
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.7e-17 Score=122.47 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc--CccccCceeEE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIRC 175 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v 175 (346)
.+.+++|||+|||+++++++|+.+|++||.|.+|+++++ +|||||+|.+.++|.+|+..++ +..+.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 446789999999999999999999999999999999874 7999999999999999999887 46899999999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.++
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 999754
No 176
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=120.99 Aligned_cols=72 Identities=24% Similarity=0.445 Sum_probs=67.5
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCC-CCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+.++|||+|||..+++++|+++|..|| |..|+|++++.+ +.++|||||+|.+.++|.+|| .|||..|.||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 3458999999999999999999999999 999999999987 788999999999999999999 89999999973
No 177
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=119.86 Aligned_cols=72 Identities=28% Similarity=0.468 Sum_probs=67.5
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCC-CCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE-KNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+++|||+|||..+++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 37999999999999999999999999999999999887655 7899999999999999999999999999974
No 178
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-17 Score=119.96 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=68.2
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
......++|||+|||..+++++|+++|+.||.|..|+|+++..+ ++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33445589999999999999999999999999999999998754 5899999999999999999999999999974
No 179
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.6e-17 Score=126.20 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCC---eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
....++|||+|||+++++++|+.+|+.||. |..|+++.++. |+++|||||+|.+.++|.+||. +|+..+.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999999 89999999976 9999999999999999999998 999999999999
Q ss_pred EeecCc
Q 019068 175 CSTSQA 180 (346)
Q Consensus 175 v~~~~~ 180 (346)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 988763
No 180
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=120.77 Aligned_cols=74 Identities=27% Similarity=0.375 Sum_probs=68.5
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|++||.|..|+|++++. +.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 34458999999999999999999999999999999999886 667999999999999999999999999999974
No 181
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=119.80 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=66.4
Q ss_pred ccceEEEEcCCCcccCHHHHH----HHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|.+|+..|||..|.||+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345899999999999999999 99999999999999999876 689999999999999999999999999974
No 182
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=121.64 Aligned_cols=73 Identities=30% Similarity=0.426 Sum_probs=67.8
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 345689999999999999999999999999999999988 6667899999999999999999999999999974
No 183
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.1e-17 Score=130.18 Aligned_cols=82 Identities=23% Similarity=0.429 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|||+|||+.+++++|+.+|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 57799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cc
Q 019068 180 AK 181 (346)
Q Consensus 180 ~~ 181 (346)
+.
T Consensus 126 ~~ 127 (135)
T 2lea_A 126 YG 127 (135)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 184
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=121.51 Aligned_cols=73 Identities=23% Similarity=0.418 Sum_probs=66.2
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCC-CCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK-PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.|| |..++|++++ .++.++|||||+|.+.++|.+|+ .|||..|+||+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 34458999999999999999999999999 9999999998 57888999999999999999999 89999999985
No 185
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=2e-17 Score=125.25 Aligned_cols=75 Identities=17% Similarity=0.339 Sum_probs=70.3
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344589999999999999999999999999999999999988888999999999999999999999999999973
No 186
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=1.9e-17 Score=118.75 Aligned_cols=73 Identities=21% Similarity=0.401 Sum_probs=67.6
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|.+|+. ++|..|+||+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 81 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRV 81 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEE
Confidence 344899999999999999999999999999999999999889899999999999999999997 6888898873
No 187
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.6e-17 Score=118.36 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc--CccccCceeEEe
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIRCS 176 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~ 176 (346)
+.+++|||+|||+.+++++|+.+|++||.|..|+++++ +|||||+|.+.++|.+|+..|+ +..+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998764 8999999999999999999764 677999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.++
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99753
No 188
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.5e-17 Score=119.46 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCc--cccCceeEEe
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRCS 176 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 176 (346)
+.+++|||+|||+.+++++|+.+|++||.|..|+++++ +|||||+|.+.++|.+|+..|++. .+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999998763 799999999999999999988754 5899999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.++
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 99864
No 189
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=119.62 Aligned_cols=67 Identities=24% Similarity=0.374 Sum_probs=61.6
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc--cCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~--i~gr~ 346 (346)
++++|||+|||..+|+++|+++|++||.|.++++++. ||||||+|.+.++|.+|+..|||.. |.||+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 4489999999999999999999999999999999864 6999999999999999999999876 77874
No 190
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=6.3e-17 Score=124.62 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=70.1
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+.+|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|||..|+|++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999974
No 191
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=7.7e-17 Score=119.05 Aligned_cols=80 Identities=31% Similarity=0.529 Sum_probs=73.6
Q ss_pred hCCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 95 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
...+..+++|||+|||..+++++|+.+|++||.|.++++. .++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp TTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred hcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445568899999999999999999999999999999997 3689999999999999999999999999999999
Q ss_pred EeecCc
Q 019068 175 CSTSQA 180 (346)
Q Consensus 175 v~~~~~ 180 (346)
|.++.+
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999875
No 192
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=115.49 Aligned_cols=78 Identities=27% Similarity=0.507 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.+...++|||+|||+++++++|+.+|++||.|..++++ +|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34568899999999999999999999999999999986 6799999999999999999999999999999999
Q ss_pred ecCccc
Q 019068 177 TSQAKY 182 (346)
Q Consensus 177 ~~~~~~ 182 (346)
++.++.
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 998643
No 193
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=123.01 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc--CccccCceeE
Q 019068 98 PPHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~ 174 (346)
...+++|||+|||++ +++++|+.+|++||.|.+|++++ ++|||||+|.+.++|.+|+..|+ +..+.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446889999999998 99999999999999999999974 48999999999999999999886 4569999999
Q ss_pred EeecCccccceec
Q 019068 175 CSTSQAKYRLFIG 187 (346)
Q Consensus 175 v~~~~~~~~l~v~ 187 (346)
|.++.....+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999987776554
No 194
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=2.1e-17 Score=119.11 Aligned_cols=71 Identities=18% Similarity=0.392 Sum_probs=67.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|.+|+ .|||..|.||+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQ 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcE
Confidence 479999999999999999999999999999999999888888999999999999999999 89999999974
No 195
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=121.38 Aligned_cols=69 Identities=26% Similarity=0.478 Sum_probs=64.6
Q ss_pred ceEEEEcCCCccc------CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 275 VKAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 275 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.++|||+|||..+ ++++|+.+|++||.|..|+|+ +.++.++|||||+|.+.++|.+|+..|||..|+||
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4899999999999 789999999999999999998 35667799999999999999999999999999998
No 196
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=9.6e-17 Score=123.21 Aligned_cols=76 Identities=28% Similarity=0.409 Sum_probs=70.5
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
......++|||+|||..+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 344556999999999999999999999999999999999998 7778999999999999999999999999999974
No 197
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=123.66 Aligned_cols=71 Identities=23% Similarity=0.435 Sum_probs=67.7
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4899999999999999999999999999999999998 7778999999999999999999999999999974
No 198
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=121.13 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=68.2
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhc-cCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc-cCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEH-HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE-LDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~-i~gr~ 346 (346)
+.++|||+|||..+++++|+++|+. ||.|..|+|+++. ++.++|||||+|.+.++|.+|+..|||.. |+||+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 4489999999999999999999999 9999999999998 77789999999999999999999999999 99984
No 199
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.6e-17 Score=119.86 Aligned_cols=73 Identities=26% Similarity=0.373 Sum_probs=67.1
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|+|++++.+ ++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 344589999999999999999999999999999999998655 4799999999999999999999999999974
No 200
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.6e-17 Score=119.37 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=66.5
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEE-EEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||+.+++++|+++|.+||.|.. |+|+.+ .++.++|||||+|.+.++|.+||.. ||..|+||+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY 85 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE
Confidence 34589999999999999999999999999987 899888 6777899999999999999999997 999999984
No 201
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=5.3e-17 Score=121.21 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 96 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
..++..++|||+|||+++++++|+.+|++|| .|..+.+... .++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455678999999999999999999999999 8999988642 4799999999999999999999999999999999
Q ss_pred EeecCc
Q 019068 175 CSTSQA 180 (346)
Q Consensus 175 v~~~~~ 180 (346)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999864
No 202
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1e-17 Score=123.14 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=69.8
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 3444589999999999999999999999999988888888888888999999999999999999999999999974
No 203
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=123.50 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=69.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|| .|||..|+||+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 95 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVP 95 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeE
Confidence 34589999999999999999999999999999999999998888999999999999999999 89999999973
No 204
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=6.1e-17 Score=117.45 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=66.3
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|++||.|..++|+++ ++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34589999999999999999999999999999999874 5667899999999999999999999999999984
No 205
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=3.8e-17 Score=122.06 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=69.0
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..+.++|||+|||..+++++|+++|+.||.|..|.|+++. ++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3445899999999999999999999999999999999998 7778999999999999999999999999999974
No 206
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=122.78 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=69.9
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEE--------EEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
....++|||+|||..+++++|+++|+.||.|. .|+|+.++.++.++|||||+|.+.++|.+||..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34458999999999999999999999999998 6999999888889999999999999999999999999999
Q ss_pred CCC
Q 019068 344 GDH 346 (346)
Q Consensus 344 gr~ 346 (346)
||+
T Consensus 92 g~~ 94 (113)
T 2cpe_A 92 GSK 94 (113)
T ss_dssp TEE
T ss_pred CCE
Confidence 973
No 207
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-17 Score=116.06 Aligned_cols=70 Identities=23% Similarity=0.424 Sum_probs=66.8
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+..++ ..|+||+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~ 70 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKT 70 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEE
Confidence 479999999999999999999999999999999999888899999999999999999999998 9999985
No 208
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=4.4e-17 Score=120.79 Aligned_cols=73 Identities=25% Similarity=0.307 Sum_probs=68.1
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.|| |..|+|++++.++.++|||||+|.+.++|.+|+ .|||..|.||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 34458999999999999999999999997 999999999998889999999999999999999 89999999974
No 209
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=112.09 Aligned_cols=79 Identities=20% Similarity=0.338 Sum_probs=69.9
Q ss_pred CCCE-EEEcCCCCCCCHHH----HHHHHHcc-CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 100 HGSE-VYIGGIPHDASEHD----LRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 100 ~~~~-l~v~nlp~~~~~~~----l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
++.| |||+|||+++++++ |+++|++| |.|.+| +| |+|||.|.+.++|.+|++.|+|..+.|+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 599998 34 999999999999999999999999999999
Q ss_pred EEeecCccccceecC
Q 019068 174 RCSTSQAKYRLFIGN 188 (346)
Q Consensus 174 ~v~~~~~~~~l~v~~ 188 (346)
+|.++..++.++...
T Consensus 77 ~v~~A~~~sd~~~~~ 91 (96)
T 2diu_A 77 IVSFTPKNRELCETS 91 (96)
T ss_dssp EEESSCCSCCCCCCC
T ss_pred EEEecCCCcceeEec
Confidence 999999888776543
No 210
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-17 Score=128.54 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..+.++.+..+|.++|||||+|.+.++|.+||. ||+..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467899999999999999999999999999987777777789999999999999999999998 999999999999999
Q ss_pred cCc
Q 019068 178 SQA 180 (346)
Q Consensus 178 ~~~ 180 (346)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 874
No 211
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=5e-17 Score=116.82 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..+++|||+|||+.+++++|+.+|++| .|..+++. .++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999884 47999999999999999999999999999999999999
Q ss_pred CccccceecCC
Q 019068 179 QAKYRLFIGNI 189 (346)
Q Consensus 179 ~~~~~l~v~~l 189 (346)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 98888887763
No 212
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-17 Score=122.39 Aligned_cols=72 Identities=28% Similarity=0.427 Sum_probs=67.1
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCC---CCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP---GQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+++|+.||.|..|+|++++. ++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 48999999999999999999999999999999998876 5567899999999999999999999999999973
No 213
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-17 Score=123.58 Aligned_cols=74 Identities=23% Similarity=0.492 Sum_probs=70.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|+.||.|..+++++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 34589999999999999999999999999999999999888888999999999999999999999999999985
No 214
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=116.80 Aligned_cols=78 Identities=17% Similarity=0.405 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc--CceeEE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRC 175 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~--g~~l~v 175 (346)
+...++|||+|||+.+++++|+.+|++||.|..|.+.++ +|||||+|.+.++|.+|+..||+..+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 346789999999999999999999999999999998753 789999999999999999999999999 999999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.++
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999865
No 215
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=5.1e-18 Score=157.27 Aligned_cols=74 Identities=19% Similarity=0.384 Sum_probs=70.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+.++|||+|||..+|+++|..+|..||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999974
No 216
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=126.45 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=71.8
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
......++|||+|||..+++++|+++|++||.|..++|++++.++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33445699999999999999999999999999999999999988889999999999999999999999999999974
No 217
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.9e-17 Score=119.64 Aligned_cols=70 Identities=26% Similarity=0.469 Sum_probs=67.7
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++|||+|||..+++++|+++|+.||.|..+++++++.++.++|||||+|.+.+ |.+|+..|||..|+||+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 68999999999999999999999999999999999998889999999999999 99999999999999985
No 218
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=118.99 Aligned_cols=81 Identities=20% Similarity=0.400 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.| +++.+ .++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4468899999999999999999999999987 55555 5789999999999999999999999999999999999999
Q ss_pred cCccc
Q 019068 178 SQAKY 182 (346)
Q Consensus 178 ~~~~~ 182 (346)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98653
No 219
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=127.39 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=68.9
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEE--EEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCc----ccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~----~i~gr~ 346 (346)
...++|||+|||+.+++++|+++|++||.|.. |+|++++.++.++|||||+|.+. +|.+|+..|||. .|.||+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44589999999999999999999999999976 99999999999999999999999 999999999999 999985
No 220
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=120.74 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=72.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
.++|||+|||+++++++|+++|++| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+|+..+.|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999875 999999999999999999999 6999999999999988865
Q ss_pred c
Q 019068 181 K 181 (346)
Q Consensus 181 ~ 181 (346)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 221
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=2.1e-16 Score=115.68 Aligned_cols=79 Identities=24% Similarity=0.390 Sum_probs=71.3
Q ss_pred hCCCCCCCEEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 95 LALPPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 95 ~~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
....+.+++|||+|||+ .+++++|+.+|++||.|..+++ ++|||||+|.+.++|.+|+..|+|..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455789999999998 9999999999999999999998 37899999999999999999999999999999
Q ss_pred EEeecCcc
Q 019068 174 RCSTSQAK 181 (346)
Q Consensus 174 ~v~~~~~~ 181 (346)
+|.++.++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998754
No 222
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=119.58 Aligned_cols=81 Identities=28% Similarity=0.554 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|++||.|..|+++++ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4557889999999999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred ecCcccc
Q 019068 177 TSQAKYR 183 (346)
Q Consensus 177 ~~~~~~~ 183 (346)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9986543
No 223
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=124.00 Aligned_cols=81 Identities=11% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCC---eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
....++|||+|||+++++++|+.+|+.||. |..|+++.++. |+++|||||+|.+.++|.+||. +++..+.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456889999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred EeecCc
Q 019068 175 CSTSQA 180 (346)
Q Consensus 175 v~~~~~ 180 (346)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998864
No 224
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=121.76 Aligned_cols=74 Identities=30% Similarity=0.509 Sum_probs=69.0
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..||+ .|.||+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 34458999999999999999999999999999999999999899999999999999999999999998 788863
No 225
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=7.8e-18 Score=124.44 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+++++++|+.+|++||.|.. .++.+..+|.++|||||+|.+.++|.+|+. |++..+.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999888 667777788999999999999999999998 9999999999999998
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
.++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 226
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.4e-17 Score=119.52 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=61.3
Q ss_pred cceEEEEcCCCc-ccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc--cCCCC
Q 019068 274 QVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~--i~gr~ 346 (346)
++++|||+|||. .+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+..|||.. |.||+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 458999999999 9999999999999999999999876 4899999999999999999998754 88874
No 227
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=130.48 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=68.9
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccC--cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|.+||..|||..|+||+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 47999999999999999999999999 9999999999999999999999999999999999999999999974
No 228
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=5.1e-17 Score=119.08 Aligned_cols=82 Identities=20% Similarity=0.411 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
.+.+++|||+|||+.+++++|+ .+|++||.|..|.+.. +|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4568899999999999999999 9999999999999874 46789999999999999999999999999999999
Q ss_pred EEeecCccc
Q 019068 174 RCSTSQAKY 182 (346)
Q Consensus 174 ~v~~~~~~~ 182 (346)
.|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998654
No 229
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1e-17 Score=122.40 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=68.3
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+..++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 34489999999999999999999999999998888888888888999999999999999999999999999974
No 230
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=118.13 Aligned_cols=76 Identities=28% Similarity=0.455 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC-----cee
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-----KKI 173 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-----~~l 173 (346)
...++|||+|||+++++++|+.+|++||.|..|.++.+ |||||+|.+.++|.+||+.||+..+.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999875 899999999999999999999999999 999
Q ss_pred EEeecCcc
Q 019068 174 RCSTSQAK 181 (346)
Q Consensus 174 ~v~~~~~~ 181 (346)
.|.++.++
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99999864
No 231
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=113.65 Aligned_cols=76 Identities=22% Similarity=0.450 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh-cCccccCceeEEe
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCS 176 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~ 176 (346)
....++|||+|||+.+++++|+.+|++||.|..+++++ ++|||||+|.+.++|.+|+..| ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34678999999999999999999999999999999986 3799999999999999999988 9999999999998
Q ss_pred ecC
Q 019068 177 TSQ 179 (346)
Q Consensus 177 ~~~ 179 (346)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 232
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=116.97 Aligned_cols=79 Identities=23% Similarity=0.465 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|. +.++. +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66665 46899999999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9864
No 233
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.3e-17 Score=119.89 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=65.8
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.....+|||+|||+.+++++|+++|+.| .|..|+|+.++. +.++|||||+|.+.++|.+|| .+||..|+||.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 3445899999999999999999999999 899999999986 667999999999999999999 59999999973
No 234
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=120.97 Aligned_cols=75 Identities=25% Similarity=0.475 Sum_probs=69.7
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.....++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||.. ||..|.||+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 344558999999999999999999999999999999999998888999999999999999999998 999999873
No 235
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=117.85 Aligned_cols=68 Identities=25% Similarity=0.338 Sum_probs=61.5
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCc--ccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY--ELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~--~i~gr~ 346 (346)
.++++|||+|||..+++++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..|++. .|.||+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34589999999999999999999999999999999875 699999999999999999998765 488874
No 236
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=3.8e-17 Score=113.73 Aligned_cols=69 Identities=13% Similarity=0.369 Sum_probs=65.9
Q ss_pred EEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+. ++|..|+||+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSK 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEE
Confidence 59999999999999999999999999999999999988899999999999999999999 5999999985
No 237
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.7e-16 Score=129.26 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+..+++|||+|||+.+++++|+.+|++||.|..|.++.+. +|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCcccc
Q 019068 178 SQAKYR 183 (346)
Q Consensus 178 ~~~~~~ 183 (346)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 876543
No 238
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.4e-17 Score=121.14 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=67.9
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
......++|||+|||..+++++|+++|++||.|..++++++..+ ++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB--CTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC--CceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 33445689999999999999999999999999999999998643 6899999999999999999999999999974
No 239
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=119.20 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=67.4
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCc-EEEEEeC-CCCCCCCCCCEEEEEeCCHHHHHHHHHHhc--CcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVP-PAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~Al~~ln--g~~i~gr~ 346 (346)
.++|||+|||..+++++|+++|..||. |..+.++ .++.++.++|||||+|.+.++|.+|+..|| +..|.||+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 489999999999999999999999998 9999999 788888889999999999999999999996 58999974
No 240
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=116.54 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=61.9
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc--CcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln--g~~i~gr~ 346 (346)
..++++|||+|||..+++++|+.+|++||.|..|.++++ +|||||+|.+.++|.+|+..|+ +..|.||+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344589999999999999999999999999999999876 6999999999999999999874 67788874
No 241
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-17 Score=124.30 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCe----EEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV----TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
...+++|||+|||+.+++++|+.+|++||.| ..+++. +|.++|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3467899999999999999999999999998 455554 68899999999999999999999999999999999
Q ss_pred EEeecCcc
Q 019068 174 RCSTSQAK 181 (346)
Q Consensus 174 ~v~~~~~~ 181 (346)
.|.++.+.
T Consensus 98 ~v~~a~~~ 105 (115)
T 2cpx_A 98 VIEFGKNK 105 (115)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99999864
No 242
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.2e-17 Score=120.20 Aligned_cols=79 Identities=10% Similarity=0.205 Sum_probs=71.7
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecC----HHH----HHHHHH--HhcCcc
Q 019068 102 SEVYIGGI----PHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN----VEL----ASKAID--KLNNTE 167 (346)
Q Consensus 102 ~~l~v~nl----p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 167 (346)
+.|||+|| |+.+++..|+++|++||.|.++.++.|+.||.++|||||+|.+ ++. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 323 888887 789999
Q ss_pred ccCceeEEeecCc
Q 019068 168 FKGKKIRCSTSQA 180 (346)
Q Consensus 168 ~~g~~l~v~~~~~ 180 (346)
|.|+.|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987663
No 243
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=9.3e-17 Score=120.21 Aligned_cols=74 Identities=23% Similarity=0.410 Sum_probs=66.2
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+.+|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..+ |..|+||+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 344589999999999999999999999999999999999998889999999999999999999965 58888873
No 244
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.5e-17 Score=123.43 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCe----EEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV----TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
....++|||+|||+++++++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+||. .|+..+.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEE
Confidence 3467899999999999999999999999975 689999984 89999999999999999999997 59999999999
Q ss_pred EEeecC
Q 019068 174 RCSTSQ 179 (346)
Q Consensus 174 ~v~~~~ 179 (346)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 998765
No 245
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=2.5e-16 Score=117.53 Aligned_cols=78 Identities=27% Similarity=0.513 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 96 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
......++|||+|||+.+++++|+.+|++||.|..|.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344568899999999999999999999999999999997 789999999999999999999999999999999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.+.
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 998764
No 246
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=121.12 Aligned_cols=70 Identities=21% Similarity=0.413 Sum_probs=63.0
Q ss_pred cceEEEEcCCCcccCHHHHH----HHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.++|||+|||..+++++|+ ++|++||.|..|.+.+ ++.++|||||+|.+.++|..|+..|||..|.||+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 35799999999999999876 7999999999998865 3456899999999999999999999999999985
No 247
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=117.11 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|+.|+ .+.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345688999999999999999999999874 67888888889999999999999999999999999999999999999
Q ss_pred ecCccc
Q 019068 177 TSQAKY 182 (346)
Q Consensus 177 ~~~~~~ 182 (346)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998653
No 248
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=113.30 Aligned_cols=78 Identities=31% Similarity=0.500 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.....++|||+|||+.+++++|+.+|++||.|..|.++ ++||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999986 3499999999999999999999999999999999
Q ss_pred ecCccc
Q 019068 177 TSQAKY 182 (346)
Q Consensus 177 ~~~~~~ 182 (346)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998654
No 249
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=120.12 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=62.2
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC--cccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng--~~i~gr~ 346 (346)
+++++|||+|||..+++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|++ ..|.||+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 34589999999999999999999999999999999876 69999999999999999999884 6898875
No 250
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=112.98 Aligned_cols=77 Identities=27% Similarity=0.468 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.+...++|||+|||+.+++++|+.+|++||.|..+++++ +||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345688999999999999999999999999999999963 499999999999999999999999999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.+.
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99764
No 251
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=8.3e-17 Score=126.15 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=71.0
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.....++|||+|||..+++++|+.+|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3445689999999999999999999999999999999999988888999999999999999999999999999974
No 252
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.8e-17 Score=118.67 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=65.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||+.+++++|+++|++||. ..|+|++++ ++.++|||||+|.+.++|.+||. +|+..|+||+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRY 83 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 34589999999999999999999999995 599999998 77789999999999999999995 8999999984
No 253
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=119.34 Aligned_cols=71 Identities=11% Similarity=0.298 Sum_probs=66.7
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
..++|||+|||..+++++|+.+|+.||.|..++|++++ ++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 34899999999999999999999999999999999998 777899999999999999999999999999654
No 254
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=120.07 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=67.6
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|..||.|..|+|+.++. +.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 3458999999999999999999999999999999999874 667899999999999999999999999999873
No 255
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=4.4e-17 Score=120.57 Aligned_cols=80 Identities=30% Similarity=0.567 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
.+++|||+|||+.+++++|+.+|++||.|..|+++.+. +|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46799999999999999999999999999999999998 89999999999999999999997 9999999999998887
Q ss_pred ccc
Q 019068 180 AKY 182 (346)
Q Consensus 180 ~~~ 182 (346)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 256
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9e-17 Score=120.75 Aligned_cols=73 Identities=21% Similarity=0.394 Sum_probs=66.8
Q ss_pred cceEEEEcCCCcccCHHHHH---HHhhccCcEEEEEeCCCCCCC---CCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLK---KLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..++|||+|||..+++++|+ ++|++||.|..|.|+++..++ .++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 34899999999999999999 999999999999999988653 34699999999999999999999999999974
No 257
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=4.7e-18 Score=128.97 Aligned_cols=83 Identities=22% Similarity=0.460 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEE--------EEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 170 (346)
...++|||+|||+.+++++|+.+|++||.|.. |+++.++.+|.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999998889999999999999999999999999999999
Q ss_pred ceeEEeecCcc
Q 019068 171 KKIRCSTSQAK 181 (346)
Q Consensus 171 ~~l~v~~~~~~ 181 (346)
+.|+|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998764
No 258
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.4e-17 Score=122.33 Aligned_cols=76 Identities=21% Similarity=0.418 Sum_probs=70.3
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
......++|||+|||..+++++|+++|..||.|..|+|++++.++.++|||||+|.+.++|.+||.. ||..|+||+
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 97 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV 97 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEE
Confidence 3445569999999999999999999999999999999999999888999999999999999999997 999999873
No 259
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=118.10 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=62.4
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+++|++||.|..|.|++. +|||||+|.+.++|.+|+..|||..|.||+
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 489999999999999999999999999999999863 699999999999999999999999999984
No 260
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=119.42 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=67.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCc---EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. +||..|+||.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34589999999999999999999999998 89999999988 7779999999999999999999 9999999984
No 261
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=116.86 Aligned_cols=72 Identities=22% Similarity=0.436 Sum_probs=64.9
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..|.|+.+. .++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3345899999999999999999999999999999997653 35899999999999999999999999999873
No 262
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.8e-17 Score=121.41 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=66.8
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcE-EEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||+.+++++|+++|+.||.| ..|+|++++ ++.++|||||+|.+.++|.+||.. ||..|+||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeE
Confidence 345899999999999999999999999999 889999998 777899999999999999999996 999999973
No 263
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=118.89 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|||+|||+.+++++|+.+|++||.|..|.++. ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998864 57899999999999999999999999999999999987
Q ss_pred c
Q 019068 180 A 180 (346)
Q Consensus 180 ~ 180 (346)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 264
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=5e-17 Score=126.37 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=65.1
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||+.+|+++|+++|++|| |..|+|+.++. +.++|||||+|.+.++|.+|| .+|+..|+||.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~ 114 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRY 114 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEE
Confidence 3458999999999999999999999999 67999999987 777999999999999999999 69999999984
No 265
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.4e-16 Score=115.20 Aligned_cols=77 Identities=26% Similarity=0.425 Sum_probs=69.8
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 97 LPPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
..+..++|||+|||+ .+++++|+.+|++||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345688999999998 99999999999999999999983 789999999999999999999999999999999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.+.
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 998753
No 266
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.3e-16 Score=121.63 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeE--EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeE
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 174 (346)
.+...++|||+|||+++++++|+.+|++| .|. .|+|+.++. |+++|||||+|.+.++|.+||. +++..+.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 566 999999987 9999999999999999999997 688999999999
Q ss_pred EeecCc
Q 019068 175 CSTSQA 180 (346)
Q Consensus 175 v~~~~~ 180 (346)
|.++.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 267
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=9.5e-17 Score=117.40 Aligned_cols=77 Identities=17% Similarity=0.360 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|||+|||+.+++++|+.+|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 57899999999999999999999999988766 2458899999999999999999999999999999999999987
Q ss_pred cc
Q 019068 180 AK 181 (346)
Q Consensus 180 ~~ 181 (346)
++
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 268
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=6e-16 Score=114.63 Aligned_cols=75 Identities=19% Similarity=0.415 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+.+++++|+.+|++||.|..|.++ ++||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 457899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
.+.
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 269
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.9e-16 Score=112.59 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHcc--CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSI--GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
...++|||+|||+.+++++|+.+|++| |.|..+.+. +|||||+|.+.++|.+|+..||+..+.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999 999998863 6799999999999999999999999999999999
Q ss_pred ecCccc
Q 019068 177 TSQAKY 182 (346)
Q Consensus 177 ~~~~~~ 182 (346)
++.+..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998653
No 270
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=111.86 Aligned_cols=66 Identities=30% Similarity=0.655 Sum_probs=61.8
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|++||.|..++++ +|||||+|.+.++|.+|+..|||..|.||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 345899999999999999999999999999999997 489999999999999999999999999974
No 271
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=115.21 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=65.5
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..++|||+|||..+++++|+++|+.| .|..|+|+++ .++.++|||||+|.+.++|.+|+. |||..|+||+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~ 78 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRY 78 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcE
Confidence 34899999999999999999999999 8999999999 677779999999999999999999 9999999973
No 272
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=115.26 Aligned_cols=69 Identities=28% Similarity=0.519 Sum_probs=64.1
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..+.++|||+|||..+++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..|||..|.||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 445589999999999999999999999999999999865 599999999999999999999999999985
No 273
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=7e-17 Score=125.51 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+...++|||+|||+++++++|+++|++|| |..|+|+.++. |+++|||||+|.+.++|.+|| .+++..+.|+.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999 67999999976 999999999999999999999 7999999999999988
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.+.
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7753
No 274
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=1.7e-16 Score=118.43 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=62.6
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccC-cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||+.+++++|+++|+.|| .|..+.++... ++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~----~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD----FDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS----SSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC----CCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 38999999999999999999999999 89999996432 5899999999999999999999999999974
No 275
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=114.09 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEE-EeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR-IMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~-~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
...++|||+|||+.+++++|+.+|++||.|..++ ++.++.+ |.|||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3578999999999999999999999999999995 7776543 3499999999999999999999999999999999
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9864
No 276
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=4.8e-16 Score=117.64 Aligned_cols=70 Identities=17% Similarity=0.380 Sum_probs=64.4
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+++|||+|||..+++++|+.+|+.||.|..|.|+++.. ++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 348999999999999999999999999999999987643 3799999999999999999999999999974
No 277
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=2.4e-16 Score=126.02 Aligned_cols=74 Identities=26% Similarity=0.375 Sum_probs=70.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34589999999999999999999999999999999999998888999999999999999999999999999873
No 278
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=111.70 Aligned_cols=69 Identities=25% Similarity=0.467 Sum_probs=63.6
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHh-cCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l-ng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|++||.|..++++++ +|||||+|.+.++|.+|+..| ||..|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 344589999999999999999999999999999999874 699999999999999999998 999999973
No 279
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=115.88 Aligned_cols=72 Identities=25% Similarity=0.438 Sum_probs=65.8
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
....++|||+|||..+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||. ++..|+||
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 3445899999999999999999999999999999999999888899999999999999999999 46677776
No 280
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.2e-16 Score=112.57 Aligned_cols=67 Identities=15% Similarity=0.303 Sum_probs=62.4
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC--CCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD--GDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~--gr~ 346 (346)
+.++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|||..|. ||+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 3489999999999999999999999999999999865 589999999999999999999999999 763
No 281
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=112.26 Aligned_cols=78 Identities=21% Similarity=0.423 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..| +.++.+|. ||||+|.+.++|.+|+. |++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 55555554 99999999999999998 999999999999998
Q ss_pred cCcc
Q 019068 178 SQAK 181 (346)
Q Consensus 178 ~~~~ 181 (346)
+.++
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 8654
No 282
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=9.9e-16 Score=123.49 Aligned_cols=82 Identities=16% Similarity=0.400 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
....++|||+|||+.+++++|+.+|++||.|..+.++.+..+|.++|+|||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34577999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cC
Q 019068 178 SQ 179 (346)
Q Consensus 178 ~~ 179 (346)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 283
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.3e-17 Score=123.50 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||+.+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|.+||. |||..|+||+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRF 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 3345899999999999999999999999999886666666678889999999999999999999 9999999985
No 284
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=1.4e-16 Score=122.32 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=68.2
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..++|||+|||..+++++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|+ .|||..|+|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 3589999999999999999999999999999999999888888999999999999999999 79999999973
No 285
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.9e-16 Score=116.81 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=61.1
Q ss_pred ccceEEEEcCCCcc-cCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC--cccCCCC
Q 019068 273 SQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng--~~i~gr~ 346 (346)
.++++|||+|||.. +++++|+++|++||.|.+|+|++. +|||||+|.+.++|.+|+..||+ ..|.||+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34589999999998 999999999999999999999764 69999999999999999998865 5589885
No 286
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.1e-16 Score=114.61 Aligned_cols=71 Identities=27% Similarity=0.446 Sum_probs=63.3
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 3445899999999999999999999999987 56666 56667999999999999999999999999999873
No 287
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=8.3e-17 Score=124.72 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=67.0
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCc---EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||+.+|+++|+++|+.||. |..|+|++++. +.++|||||+|.+.++|.+||. |||..|+||+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34589999999999999999999999999 88999999987 7779999999999999999999 9999999984
No 288
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=116.43 Aligned_cols=78 Identities=27% Similarity=0.450 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCC---CCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS---SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
...++|||+|||+++++++|+.+|++||.|. +.++.+..+ |.++|||||+|.+.++|.+|+..|+ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888777 7999999999999999999999884 356666666
Q ss_pred eecC
Q 019068 176 STSQ 179 (346)
Q Consensus 176 ~~~~ 179 (346)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5444
No 289
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=6.2e-16 Score=117.88 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=64.5
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEE--EEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||+.+|+++|+++|++| .|. .|+|+.++. +.++|||||+|.+.++|.+||. ++|..|+||.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~ 112 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRY 112 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEE
Confidence 345899999999999999999999999 566 999999987 7779999999999999999999 5889999984
No 290
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=8.6e-17 Score=118.80 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=66.1
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+.+|+.||.|.. .++.+..++.++|||||+|.+.++|.+|+. |||..|.||+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 86 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 86 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence 34589999999999999999999999999888 777777778889999999999999999999 9999999984
No 291
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=113.57 Aligned_cols=77 Identities=25% Similarity=0.449 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCC-eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcC-ccccCceeEE
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN-TEFKGKKIRC 175 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~l~v 175 (346)
+...++|||+|||+++++++|+.+|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666552 488999999999999999999999 9999999999
Q ss_pred eecCcc
Q 019068 176 STSQAK 181 (346)
Q Consensus 176 ~~~~~~ 181 (346)
.++.++
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999864
No 292
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=1.2e-16 Score=121.38 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=66.6
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCc---EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. |||..|+||+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34589999999999999999999999999 89999999887 6679999999999999999999 9999999973
No 293
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=125.98 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEE--------EEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV--------RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~--------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 169 (346)
...+++|||+|||+.+++++|+.+|++||.|..+ ++. .+|.++|||||+|.+.++|.+|+..|||..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4467899999999999999999999999998764 333 35889999999999999999999999999999
Q ss_pred CceeEEeecCc
Q 019068 170 GKKIRCSTSQA 180 (346)
Q Consensus 170 g~~l~v~~~~~ 180 (346)
|+.|.|.++.+
T Consensus 119 g~~l~V~~a~~ 129 (143)
T 3egn_A 119 GKPMVVQFARS 129 (143)
T ss_dssp TEECEEEECCC
T ss_pred CcEEEEEECCC
Confidence 99999999975
No 294
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=9.3e-16 Score=115.02 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 100 HGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..++|||+|||+. +++++|+.+|++||.|..|.+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999998 4789999999999999999999999999999999998
Q ss_pred Cc
Q 019068 179 QA 180 (346)
Q Consensus 179 ~~ 180 (346)
.+
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 295
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=4.7e-16 Score=116.07 Aligned_cols=69 Identities=25% Similarity=0.465 Sum_probs=62.5
Q ss_pred cccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
......++|||+|||..+++++|+.+|+.||.|..+.++ +|||||+|.+.++|.+|+..|||..|+||+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 334455899999999999999999999999999999997 589999999999999999999999999973
No 296
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=2.1e-16 Score=116.87 Aligned_cols=71 Identities=15% Similarity=0.350 Sum_probs=64.4
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
....++|||+|||..+++++|+.+|+.||.|..++|++++ ++.++|||||+|.+.++|.+|+. +|..|+|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 3445899999999999999999999999999999999998 78889999999999999999999 66666665
No 297
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=3.5e-16 Score=132.73 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=69.0
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccC--cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+|+++|+++|+.|| .|..|+|++++.++.++|||||+|.+.++|.+||..|||..|.||+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 47999999999999999999999999 9999999999999999999999999999999999999999999985
No 298
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1e-15 Score=111.91 Aligned_cols=67 Identities=24% Similarity=0.461 Sum_probs=61.8
Q ss_pred cccceEEEEcCCCc-ccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.+.+++|||+|||. .+++++|+.+|+.||.|..+++. +|||||+|.+.++|.+|+..|||..|+||+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34458999999998 99999999999999999999993 689999999999999999999999999873
No 299
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=113.98 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=61.3
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
..++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 3589999999999999999999999999999999887 799999999999999999999999998
No 300
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=113.79 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=68.4
Q ss_pred CCCCCCCEEEE--cCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc-----
Q 019068 96 ALPPHGSEVYI--GGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF----- 168 (346)
Q Consensus 96 ~~~~~~~~l~v--~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~----- 168 (346)
.....+++||| +|||+++++++|+.+|++||.|..|.++. .+|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 33445789999 77999999999999999999999998764 378999999999999999999999987
Q ss_pred cCceeEEeecC
Q 019068 169 KGKKIRCSTSQ 179 (346)
Q Consensus 169 ~g~~l~v~~~~ 179 (346)
.|+.|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 67888887764
No 301
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.1e-16 Score=115.17 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=62.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+.+|+.||.|..|+|+++ +|||||+|.+.++|.+|+..|||..|.|++
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 489999999999999999999999999999999987 599999999999999999999999999973
No 302
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.9e-16 Score=114.68 Aligned_cols=66 Identities=23% Similarity=0.365 Sum_probs=62.7
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++|||+|||..+++++|+++|++||.|..+.++++ ++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 48999999999999999999999999999999988 4799999999999999999999999999985
No 303
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.3e-15 Score=141.07 Aligned_cols=82 Identities=15% Similarity=0.375 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|||+|||+.+|+++|+.+|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cc
Q 019068 180 AK 181 (346)
Q Consensus 180 ~~ 181 (346)
+.
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 54
No 304
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.2e-15 Score=111.45 Aligned_cols=66 Identities=24% Similarity=0.462 Sum_probs=61.1
Q ss_pred ccceEEEEcCCCc-ccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++.++|||+|||. .+++++|+.+|++||.|..+.+. +|||||+|.+.++|.+|+..|||..|.||+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3458999999998 99999999999999999999983 689999999999999999999999999985
No 305
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.8e-16 Score=112.41 Aligned_cols=69 Identities=25% Similarity=0.429 Sum_probs=61.3
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+.+|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3458999999999999999999999999986 555543 35799999999999999999999999999985
No 306
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=3.2e-16 Score=114.78 Aligned_cols=70 Identities=27% Similarity=0.488 Sum_probs=63.7
Q ss_pred cceEEEEcCCCcccCHHHHH----HHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++++|||+|||..+++++|+ .+|++||.|..|.+++ ++.++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34899999999999999999 9999999999999873 3455799999999999999999999999999973
No 307
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=9.2e-16 Score=115.90 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=61.5
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+||..|||..|+|++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 489999999999999999999999999999999876 89999999999999999999999999974
No 308
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.9e-15 Score=108.52 Aligned_cols=76 Identities=34% Similarity=0.553 Sum_probs=62.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc--ccCceeE
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIR 174 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~ 174 (346)
.+...++|||+|||+++++++|+.+|++||.|.+|+++++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456889999999999999999999999999999999874 79999999999999984 45544 4699999
Q ss_pred EeecCcc
Q 019068 175 CSTSQAK 181 (346)
Q Consensus 175 v~~~~~~ 181 (346)
|.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9998764
No 309
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.62 E-value=1.1e-15 Score=114.68 Aligned_cols=85 Identities=19% Similarity=0.299 Sum_probs=69.0
Q ss_pred CCCCceeeecCCCCCCCcccccceEEEEcCCCcc-cCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHH
Q 019068 253 GTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (346)
Q Consensus 253 ~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 331 (346)
.|..+.+..+.+.... ......++|||+|||.. +++++|+++|++||.|..|.| ++|||||+|.+.++|.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 3445555554433222 22333489999999999 999999999999999999998 3799999999999999
Q ss_pred HHHHHhcCcccCCCC
Q 019068 332 KALKNTEKYELDGDH 346 (346)
Q Consensus 332 ~Al~~lng~~i~gr~ 346 (346)
+|+..|||..|+|++
T Consensus 77 ~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 77 AAVLGENGRVLAGQT 91 (110)
T ss_dssp HHHHHHTTCEETTEE
T ss_pred HHHHHcCCCEECCeE
Confidence 999999999999873
No 310
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=8.9e-16 Score=113.29 Aligned_cols=66 Identities=21% Similarity=0.416 Sum_probs=61.9
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+.+|+.||.|.++++++. +|||||+|.+.++|.+|+..|||..|+||+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 489999999999999999999999999999999843 699999999999999999999999999974
No 311
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.5e-15 Score=123.63 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=70.0
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.....++|||+|||..+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|+|++
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 34556899999999999999999999999999999999998 7778999999999999999999999999999974
No 312
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=110.09 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=61.1
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|||..+++++|+.+|++||.|..++++ ++||||+|.+.++|.+|+..|||..|+||+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 344899999999999999999999999999999997 359999999999999999999999999973
No 313
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=1.1e-15 Score=113.20 Aligned_cols=67 Identities=33% Similarity=0.650 Sum_probs=61.7
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..+.++|||+|||..+++++|+++|++||.|..|+++ +|||||+|.+.++|.+|+..|||..|.|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 3445899999999999999999999999999999986 469999999999999999999999999873
No 314
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=4.5e-15 Score=109.75 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHHHHccCCeEEEEEeeCCCC-CCCcceEEEEecCHHHHHHHHHHhcCccccCc
Q 019068 98 PPHGSEVYIGGIPH-----DASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (346)
Q Consensus 98 ~~~~~~l~v~nlp~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 171 (346)
+..+++|+|+||.. +-++++|+.+|++||.|.+|++++++.+ +.++|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34688999999973 2378999999999999999999998654 68999999999999999999999999999999
Q ss_pred eeEEeecCc
Q 019068 172 KIRCSTSQA 180 (346)
Q Consensus 172 ~l~v~~~~~ 180 (346)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999874
No 315
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.2e-15 Score=108.77 Aligned_cols=77 Identities=23% Similarity=0.459 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEee
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 177 (346)
+...++|||+|| ++++++|+.+|++||.|..|.+. .++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 89999999999999999999984 4689999999999999999999999999999999999
Q ss_pred cCccc
Q 019068 178 SQAKY 182 (346)
Q Consensus 178 ~~~~~ 182 (346)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98653
No 316
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=2.8e-15 Score=124.58 Aligned_cols=83 Identities=20% Similarity=0.501 Sum_probs=79.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
...++|||+|||+.+++++|+.+|++||.|..++++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
.++
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 317
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=2e-15 Score=108.10 Aligned_cols=72 Identities=29% Similarity=0.606 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHcc----C-------CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 167 (346)
...++|||+|||+++++++|+.+|++| | .|.++++.++ +|||||+|.+.++|.+|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 8999998653 899999999999999999 999999
Q ss_pred ccCceeEEee
Q 019068 168 FKGKKIRCST 177 (346)
Q Consensus 168 ~~g~~l~v~~ 177 (346)
+.|+.|+|.+
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 318
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=115.14 Aligned_cols=70 Identities=26% Similarity=0.366 Sum_probs=62.4
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcE----EEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRI----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++++|||+|||..+++++|+++|+.||.| ..+.+. ++.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 345899999999999999999999999998 455554 5567899999999999999999999999999974
No 319
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=4.1e-15 Score=117.52 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=70.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC--ceeEEeec
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 178 (346)
-.+|||+|||+.+++++|+.+|++||.|..|++... .++|||||+|.+.++|.+|+..|||..|.| +.|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 456899999999999999999999999999998754 257899999999999999999999999965 99999999
Q ss_pred Ccc
Q 019068 179 QAK 181 (346)
Q Consensus 179 ~~~ 181 (346)
.++
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 865
No 320
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=5.3e-15 Score=112.59 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=69.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcce-EEEEecCHHHHHHHHHHhcCccccC--ceeEEeec
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 178 (346)
-.|||+||++.+++++|+.+|++||.|.+|+++.. ++|+ |||+|.+.++|.+|+..|||..|.| +.|+|.++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 45779999999999999999999999999998764 3677 9999999999999999999999988 99999999
Q ss_pred Cccc
Q 019068 179 QAKY 182 (346)
Q Consensus 179 ~~~~ 182 (346)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8653
No 321
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=112.87 Aligned_cols=73 Identities=25% Similarity=0.422 Sum_probs=64.8
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.....++|||+|||..+++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|.+||..|||..|.||+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344568999999999999999999999885 5667777777888999999999999999999999999999973
No 322
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.7e-15 Score=114.45 Aligned_cols=74 Identities=28% Similarity=0.478 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCce-----eE
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK-----IR 174 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-----l~ 174 (346)
..++|||+|||+++++++|+.+|++||.|..|.++.+ |||||+|.+.++|.+||..||+..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 5689999999999999999999999999999999764 89999999999999999999999999998 66
Q ss_pred EeecCc
Q 019068 175 CSTSQA 180 (346)
Q Consensus 175 v~~~~~ 180 (346)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 655543
No 323
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-15 Score=109.57 Aligned_cols=68 Identities=32% Similarity=0.514 Sum_probs=61.9
Q ss_pred ccccceEEEEcCCCcccCHHHHHHHhhcc--CcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.....++|||+|||..+++++|+++|+.| |.|..+.++ +|||||+|.+.++|.+|+..|||..|.||+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34455899999999999999999999999 999999874 579999999999999999999999999973
No 324
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=108.87 Aligned_cols=67 Identities=21% Similarity=0.404 Sum_probs=61.6
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|++||.|..+.++ ++||||+|.+.++|.+|+..|||..|.||+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3445899999999999999999999999999999996 359999999999999999999999999873
No 325
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=6e-17 Score=122.80 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=69.0
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEE--------EEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
+.++|||+|||..+++++|+++|+.||.|.. |+|+.++.++.++|||||+|.+.++|.+|+..|||..|.||
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 3489999999999999999999999999998 99999988888899999999999999999999999999997
Q ss_pred C
Q 019068 346 H 346 (346)
Q Consensus 346 ~ 346 (346)
+
T Consensus 86 ~ 86 (116)
T 2lcw_A 86 P 86 (116)
Confidence 4
No 326
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-16 Score=118.51 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=62.9
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcE----EEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRI----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
.+|||+|||+.+|+++|+++|++||.| ..|+|+.+. ++.++|||||+|.+.++|.+||.. ||..|+||
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 799999999999999999999999975 589999885 677799999999999999999995 99999987
No 327
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=113.63 Aligned_cols=62 Identities=19% Similarity=0.393 Sum_probs=57.9
Q ss_pred ceEEEE--cCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 275 VKAVYV--KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 275 ~~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
+++||| +|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 478999 669999999999999999999999999764 69999999999999999999999987
No 328
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.7e-16 Score=116.66 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=64.9
Q ss_pred eEEEEcCC----CcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCC----HHH----HHHHHH--HhcCcc
Q 019068 276 KAVYVKNL----PRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE----RSS----AMKALK--NTEKYE 341 (346)
Q Consensus 276 ~~l~V~nL----p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~----~~~----A~~Al~--~lng~~ 341 (346)
+.|||+|| |+.+++..|+.+|+.||.|.++.++.|+.|+.++|||||+|.+ +.+ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 799999
Q ss_pred cCCCC
Q 019068 342 LDGDH 346 (346)
Q Consensus 342 i~gr~ 346 (346)
|+||+
T Consensus 83 I~Gr~ 87 (136)
T 2j8a_A 83 IMGFK 87 (136)
T ss_dssp ETTEE
T ss_pred ecCcE
Confidence 99984
No 329
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=105.47 Aligned_cols=61 Identities=26% Similarity=0.457 Sum_probs=55.0
Q ss_pred eEEEEcCCCcccCHHH----HHHHhhcc-CcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQ----LKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~----L~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++|||+|||..++.++ |.++|++| |.|.+|. .|+|||.|.+.++|.+|++.|||+.|.||+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----------GCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----------TTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----------cCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 4499999999999887 55899999 5999992 289999999999999999999999999985
No 330
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=2.2e-15 Score=107.92 Aligned_cols=66 Identities=18% Similarity=0.446 Sum_probs=61.8
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhcc----C-------cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHH----G-------RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
+.++|||+|||..+++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45899999999999999999999999 8 8999999876 599999999999999999 9999999
Q ss_pred CCCC
Q 019068 343 DGDH 346 (346)
Q Consensus 343 ~gr~ 346 (346)
.||+
T Consensus 78 ~g~~ 81 (87)
T 2hzc_A 78 QGQS 81 (87)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 9974
No 331
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=114.36 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=60.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCC---CCCCCEEEEEeCCHHHHHHHHHHh---cCcc
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG---QEKNRIGFVHFAERSSAMKALKNT---EKYE 341 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Al~~l---ng~~ 341 (346)
.++|||+|||..+++++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|.+||..| +|+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 48999999999999999999999999999 999988877 578999999999999999999998 6653
No 332
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=2.9e-15 Score=110.78 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=64.1
Q ss_pred cceEEEEcCCCc--c---cCHHHHHHHhhccCcEEEEEeCCCCCC-CCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPR--N---VTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~--~---~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++++|+|+||.. . -++++|+++|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|+..|||+.|+||+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 348999999952 2 268999999999999999999988654 567999999999999999999999999999984
No 333
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=3.8e-15 Score=122.97 Aligned_cols=111 Identities=14% Similarity=0.238 Sum_probs=84.1
Q ss_pred ChhHHHHHHHHhcCCcccCCCCCceeeecCCCCCCCc-----ccccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeC
Q 019068 234 NHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS-----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVP 308 (346)
Q Consensus 234 ~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 308 (346)
+......|+.......+.+.+....+......+.+.. .....++|||+|||..+++++|+++|++||.|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 3455666666553344556666666666532222211 22345899999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 309 ~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++.. +.++|||||+|.+.++|.+|+..+ |..|+||+
T Consensus 143 ~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~ 178 (193)
T 2voo_A 143 RTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETD 178 (193)
T ss_dssp ECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEE
T ss_pred ECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEE
Confidence 8865 667999999999999999999855 45898874
No 334
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=6.7e-15 Score=118.91 Aligned_cols=80 Identities=23% Similarity=0.435 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC--ceeEEe
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCS 176 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~ 176 (346)
...++|||+|||..+++++|+.+|++||.|..+.++++..+|.++|+|||+|.+.++|.+|+..|||..+.| +.|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 356899999999999999999999999999999999998889999999999999999999999999999988 999998
Q ss_pred ec
Q 019068 177 TS 178 (346)
Q Consensus 177 ~~ 178 (346)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 335
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=9.6e-16 Score=112.00 Aligned_cols=70 Identities=29% Similarity=0.474 Sum_probs=61.9
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
....++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3345899999999999999999999999988666 345556899999999999999999999999999974
No 336
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=108.18 Aligned_cols=69 Identities=16% Similarity=0.334 Sum_probs=62.8
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEE-EeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
..++|||+|||..+++++|+.+|+.||.|..+ .++.++.+ |.|||+|.+.++|.+|+..|||..|+||+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34899999999999999999999999999999 48887644 45999999999999999999999999984
No 337
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=6e-15 Score=116.61 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=60.3
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
..+|||+|||+.+++++|+++|++||.|.+|+|...+ ++|||||+|.+.++|.+|+..|||+.|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 3789999999999999999999999999999996443 36899999999999999999999999965
No 338
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.8e-14 Score=109.20 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcce-EEEEecCHHHHHHHHHHhcCccccC--ceeEEeecC
Q 019068 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTSQ 179 (346)
Q Consensus 103 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~ 179 (346)
.|||+|||+.+++++|+.+|++||.|..|+++.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 3679999999999999999999999999999752 275 9999999999999999999999988 699999998
Q ss_pred ccc
Q 019068 180 AKY 182 (346)
Q Consensus 180 ~~~ 182 (346)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 754
No 339
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=5.2e-15 Score=123.47 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=63.2
Q ss_pred ceEEEEcCCC-cccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLP-RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+++|||+||| ..+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|||..|.||+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 4799999999 899999999999999999999998874 799999999999999999999999999974
No 340
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=1.1e-14 Score=120.11 Aligned_cols=78 Identities=24% Similarity=0.450 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 180 (346)
.++|||+|||+.+++++|+.+|++||.|..|+++++. +|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 5799999999999999999999999999999999986 4899999999999999999999754 5689999999988753
No 341
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.2e-15 Score=109.38 Aligned_cols=66 Identities=27% Similarity=0.484 Sum_probs=58.7
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCc-EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC-cccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK-YELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng-~~i~gr~ 346 (346)
..++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|+||+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 4489999999999999999999999999 5555552 369999999999999999999999 9999873
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=2.6e-15 Score=107.78 Aligned_cols=65 Identities=22% Similarity=0.411 Sum_probs=60.4
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+++|++| .|..+++. .++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3799999999999999999999999 99999885 34799999999999999999999999999974
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.1e-15 Score=107.38 Aligned_cols=77 Identities=31% Similarity=0.493 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeec
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 178 (346)
..+++|||+|||+++++++|+.+|++||.|..|+++.+ ++|||||+|.+.++|.+|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35789999999999999999999999999999999864 68999999999999986543 234568999999998
Q ss_pred Cccc
Q 019068 179 QAKY 182 (346)
Q Consensus 179 ~~~~ 182 (346)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 344
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.7e-15 Score=106.14 Aligned_cols=66 Identities=23% Similarity=0.392 Sum_probs=58.4
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
.++|||+|||..+++++|+.+|+.||.|..| +.++.++. ||||+|.+.++|.+|+. |||..|+||+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHR 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEE
Confidence 3799999999999999999999999999988 33433332 99999999999999999 9999999973
No 345
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=1.8e-14 Score=109.60 Aligned_cols=77 Identities=23% Similarity=0.467 Sum_probs=70.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEe
Q 019068 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (346)
Q Consensus 97 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 176 (346)
.+..+++|||+|| ++++++|+.+|++||.|..|.+. .++|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456889999996 69999999999999999999985 468999999999999999999999999999999999
Q ss_pred ecCcc
Q 019068 177 TSQAK 181 (346)
Q Consensus 177 ~~~~~ 181 (346)
++.+.
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99864
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=8.7e-16 Score=120.89 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=61.3
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEE--EeCCC---CCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV--VVPPA---KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v--~i~~~---~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++++|||+|||..+|+++|+.+|+.||.|..+ +++.+ ..++.++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34899999999999999999999999988763 11111 234566899999999999999999999999999974
No 347
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=1.4e-14 Score=104.02 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=53.5
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
.+.++|||+|||..+|+++|+++|++||.|.+++|+++ ++|||||+|.+.++|.+ |+|..+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~ 70 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLI 70 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcc
Confidence 34489999999999999999999999999999999986 48999999999999983 5665543
No 348
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=104.82 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=59.8
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|| .+++++|+++|++||.|..|.|.+ ++|||||+|.+.++|.+|+..|||..|.||+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34589999996 899999999999999999999953 3799999999999999999999999999873
No 349
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=1.5e-14 Score=107.00 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=63.8
Q ss_pred cceEEEEcCC--CcccC--------HHHHHHHhhccCcEEEEEeCCCCCCC--CCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 274 QVKAVYVKNL--PRNVT--------QDQLKKLFEHHGRITKVVVPPAKPGQ--EKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 274 ~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~v~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
++++|.|.|+ |..+. .++|+++|++||.|.+|+|++++.+. .++|||||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3479999999 44443 37999999999999999999988653 468999999999999999999999999
Q ss_pred cCCCC
Q 019068 342 LDGDH 346 (346)
Q Consensus 342 i~gr~ 346 (346)
|+||+
T Consensus 84 f~GR~ 88 (105)
T 3v4m_A 84 FANRV 88 (105)
T ss_dssp ETTEE
T ss_pred eCCCE
Confidence 99984
No 350
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=1.6e-14 Score=110.01 Aligned_cols=64 Identities=23% Similarity=0.352 Sum_probs=59.6
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCE-EEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
-.|||+|||+.+|+++|+++|++||.|.+|+|+... +|| |||+|.+.++|.+|++.|||+.|.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 678899999999999999999999999999987643 677 9999999999999999999999987
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=3.9e-14 Score=107.37 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=58.3
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCE-EEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
..|||+|||+.+++++|+++|++||.|..|+|... .|| |||+|.+.++|..|+..|||..|.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 45789999999999999999999999999999652 386 99999999999999999999999873
No 352
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=2.2e-14 Score=116.78 Aligned_cols=77 Identities=17% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEEeecC
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 179 (346)
..++|||+|||+.+++++|+.+|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46799999999999999999999999988766 4568899999999999999999999999999999999999997
Q ss_pred cc
Q 019068 180 AK 181 (346)
Q Consensus 180 ~~ 181 (346)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.7e-14 Score=104.21 Aligned_cols=85 Identities=25% Similarity=0.367 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEcCCCCCCC-----------HHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc
Q 019068 96 ALPPHGSEVYIGGIPHDAS-----------EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (346)
Q Consensus 96 ~~~~~~~~l~v~nlp~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 164 (346)
..+..+++|+|+||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3456789999999954432 5799999999999999966 443 379999999999999999999999
Q ss_pred CccccCceeEEeecCccccc
Q 019068 165 NTEFKGKKIRCSTSQAKYRL 184 (346)
Q Consensus 165 ~~~~~g~~l~v~~~~~~~~l 184 (346)
|..+.|+.|.|.++.+....
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999875443
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=4.1e-14 Score=119.39 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 019068 98 PPHGSEVYIGGIPHDA---------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 168 (346)
....++|||+|||..+ ++++|+.+|++||.|.+|+++. ++|||||+|.+.++|..|+..|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568899999999998 7999999999999999999986 489999999999999999999999999
Q ss_pred ------------cCceeEEeecCcc
Q 019068 169 ------------KGKKIRCSTSQAK 181 (346)
Q Consensus 169 ------------~g~~l~v~~~~~~ 181 (346)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999854
No 355
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=6e-14 Score=119.37 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=66.3
Q ss_pred cccccceEEEEcCCCc-ccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 270 SGASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 270 ~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...+.+++|||+|||. .+++++|+++|+.||.|..|++++++ +|||||+|.+.++|.+|+..|||..|.||+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3344568999999999 99999999999999999999999986 799999999999999999999999999974
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=1.7e-14 Score=108.77 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=62.7
Q ss_pred ceEEEEcCC--Cccc---CHHHHHHHhhccCcEEEEEeCCCCCC----CCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 275 VKAVYVKNL--PRNV---TQDQLKKLFEHHGRITKVVVPPAKPG----QEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 275 ~~~l~V~nL--p~~~---t~~~L~~~F~~~G~v~~v~i~~~~~~----~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
+++|+|+|+ |..+ .+++|++.|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|+..|||++|+||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 489999999 3333 36899999999999999999988753 44579999999999999999999999999998
Q ss_pred C
Q 019068 346 H 346 (346)
Q Consensus 346 ~ 346 (346)
+
T Consensus 100 ~ 100 (118)
T 3ue2_A 100 K 100 (118)
T ss_dssp E
T ss_pred E
Confidence 4
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=6.5e-14 Score=118.17 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=64.6
Q ss_pred CCCCceeeecCCCCCCCcccccceEEEEcCCCccc---------CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEE
Q 019068 253 GTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNV---------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323 (346)
Q Consensus 253 ~~~~~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~ 323 (346)
.|+.....+........+.....++|||+|||..+ ++++|+.+|++||.|.+|+|++. +|||||+
T Consensus 112 fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~ 185 (240)
T 3u1l_A 112 FGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVK 185 (240)
T ss_dssp TSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEE
T ss_pred ccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEE
Confidence 34443333333333223345556999999999998 79999999999999999999864 6999999
Q ss_pred eCCHHHHHHHHHHhcCccc
Q 019068 324 FAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 324 f~~~~~A~~Al~~lng~~i 342 (346)
|.+.++|..|+..|+|..|
T Consensus 186 F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 186 FKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp ESSHHHHHHHHHHHTTCCC
T ss_pred eCCHHHHHHHHHHhCCCEE
Confidence 9999999999999999999
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=6.5e-14 Score=106.50 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=59.9
Q ss_pred ccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
...++|||+|| .+++++|+.+|+.||.|..|.+.. ++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34589999996 699999999999999999999963 3799999999999999999999999999974
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=1.3e-13 Score=101.96 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=70.8
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHHHccCCeEEEEEeeCCCC--CCCcceEEEEecCHHHHHHHHHHhcCcc
Q 019068 100 HGSEVYIGGI--PHDAS--------EHDLRDFCQSIGEVTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTE 167 (346)
Q Consensus 100 ~~~~l~v~nl--p~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~ 167 (346)
.++.|.|.|+ |..+. .++|+..|++||.|.+|.|+++..+ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 43443 3689999999999999999988654 3689999999999999999999999999
Q ss_pred ccCceeEEeecCc
Q 019068 168 FKGKKIRCSTSQA 180 (346)
Q Consensus 168 ~~g~~l~v~~~~~ 180 (346)
+.|+.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.6e-14 Score=102.51 Aligned_cols=55 Identities=25% Similarity=0.480 Sum_probs=50.5
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHH
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 334 (346)
+++|||+|||..+++++|+++|++||.|..++|+.+ ++|||||+|.+.++|.+|+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh
Confidence 489999999999999999999999999999999876 4899999999999997643
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.9e-13 Score=102.59 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=59.9
Q ss_pred ccccceEEEEcCCCccc-----------CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 271 GASQVKAVYVKNLPRNV-----------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 271 ~~~~~~~l~V~nLp~~~-----------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
.+.++++|+|+||.... ++++|+++|++||.|..|.|+ ++. ++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~---~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH---PDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC---TTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC---CCEEEEEEECCHHHHHHHHHHcCC
Confidence 33456899999994332 258999999999999999773 332 589999999999999999999999
Q ss_pred cccCCCC
Q 019068 340 YELDGDH 346 (346)
Q Consensus 340 ~~i~gr~ 346 (346)
+.|+||+
T Consensus 87 ~~~~gr~ 93 (112)
T 2dit_A 87 RWFGGRQ 93 (112)
T ss_dssp CEETTEE
T ss_pred CEECCcE
Confidence 9999974
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=5e-14 Score=104.02 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHH------------HccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 106 IGGIPHDASEHDLRDFC------------QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 106 v~nlp~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
+.|||+.+++++|+.+| ++||.|.+|+++++.. ++++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666777766665 9999999999998764 7899999999999999999999999999999999
Q ss_pred EEeec
Q 019068 174 RCSTS 178 (346)
Q Consensus 174 ~v~~~ 178 (346)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 363
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=4.5e-13 Score=117.64 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc-CceeEEe
Q 019068 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCS 176 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 176 (346)
...+++|||+|||..+++++|+.+|++||.|.+|+++.+. +|||||+|.+.++|.+|+..|||..+. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3457899999999999999999999999999999998653 689999999999999999999999999 9999999
Q ss_pred ecC
Q 019068 177 TSQ 179 (346)
Q Consensus 177 ~~~ 179 (346)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 875
No 364
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=2.7e-13 Score=112.57 Aligned_cols=77 Identities=26% Similarity=0.436 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc-CceeEEe
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCS 176 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 176 (346)
+.+++|||+|||..+++++|+.+|++|| .|..++++.+ .+|+|||+|.+.++|.+|+..|||..+. |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3578999999999999999999999999 9999999764 3789999999999999999999999999 9999999
Q ss_pred ecCc
Q 019068 177 TSQA 180 (346)
Q Consensus 177 ~~~~ 180 (346)
++.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9875
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=4.1e-13 Score=101.14 Aligned_cols=81 Identities=23% Similarity=0.319 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCC-----CCHHHHHHHHHccCCeEEEEEeeCCC----CCCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 019068 100 HGSEVYIGGIPHD-----ASEHDLRDFCQSIGEVTEVRIMKGKD----SSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (346)
Q Consensus 100 ~~~~l~v~nlp~~-----~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 170 (346)
.+++|+|+|+-.. --+++|+..|++||.|.+|+|+++.. ++.++|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6889999998422 23688999999999999999998854 35678999999999999999999999999999
Q ss_pred ceeEEeecCc
Q 019068 171 KKIRCSTSQA 180 (346)
Q Consensus 171 ~~l~v~~~~~ 180 (346)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=9.3e-14 Score=102.55 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=56.6
Q ss_pred EcCCCcccCHHHHHHHh------------hccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 280 VKNLPRNVTQDQLKKLF------------EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 280 V~nLp~~~t~~~L~~~F------------~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+.|||..+++++|++.| ++||.|.+|.|+++.. +.++|||||+|.+.++|.+|+..|||+.|+||+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 55667777777766665 9999999999998875 466999999999999999999999999999984
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.34 E-value=2.2e-12 Score=96.42 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=59.5
Q ss_pred cceEEEEcCC--Cccc--------CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 274 QVKAVYVKNL--PRNV--------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 274 ~~~~l~V~nL--p~~~--------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
++++|.|.|+ |... ..++|++.|++||.|.+|.|+++. ++|||||+|.+.++|.+|++.|||++|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4578999999 3331 246899999999999999998764 3799999999999999999999999999
Q ss_pred CCC
Q 019068 344 GDH 346 (346)
Q Consensus 344 gr~ 346 (346)
||+
T Consensus 82 GR~ 84 (114)
T 3s6e_A 82 GKM 84 (114)
T ss_dssp TEE
T ss_pred CEE
Confidence 984
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=2.3e-12 Score=114.59 Aligned_cols=64 Identities=20% Similarity=0.391 Sum_probs=58.4
Q ss_pred ccceEEEEcC--CCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 273 SQVKAVYVKN--LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 273 ~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
.++++|||+| |+..+|+++|+++|++||.|.+|.+++. ||||||+|.+.++|.+|+..|||..+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~------kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT------CSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3458999999 5789999999999999999999998762 69999999999999999999999887
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=90.12 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=62.9
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 101 GSEVYIGGIP-------HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 101 ~~~l~v~nlp-------~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
.++|.|.-.+ ..+++++|+.+|++||.|..|+++ +.++|||||+|.+.++|..|+..++ .+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 5567777654 458999999999999999999998 3579999999999999999998644 4679999
Q ss_pred EEeecCcc
Q 019068 174 RCSTSQAK 181 (346)
Q Consensus 174 ~v~~~~~~ 181 (346)
+|.++.+.
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99998754
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=2.6e-11 Score=90.56 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=66.9
Q ss_pred CCCCCEEEEcCCCCCCC----------HHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 019068 98 PPHGSEVYIGGIPHDAS----------EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~~~----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 167 (346)
+..++.|.|.|+=.... +++|+..|++||.|.+|.+.++. ++|+|||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 44677899998743322 35689999999999999997653 58999999999999999999999999
Q ss_pred ccCceeEEeecCc
Q 019068 168 FKGKKIRCSTSQA 180 (346)
Q Consensus 168 ~~g~~l~v~~~~~ 180 (346)
+.|+.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999863
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=1.2e-11 Score=110.01 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=66.3
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc---Cc
Q 019068 97 LPPHGSEVYIGG--IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GK 171 (346)
Q Consensus 97 ~~~~~~~l~v~n--lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~ 171 (346)
....+++|||+| |++.+++++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+|+..|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 355688999999 578999999999999999999987753 4799999999999999999999999873 45
Q ss_pred --eeEEeecC
Q 019068 172 --KIRCSTSQ 179 (346)
Q Consensus 172 --~l~v~~~~ 179 (346)
.|.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777764
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=9.2e-11 Score=85.39 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=51.2
Q ss_pred eEEEEcCCC-------cccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLP-------RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp-------~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
++|.|.-.+ ..+++++|+++|++||.|..|+|+. .++|||||+|.+.++|..|+..+++ +.||
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~ 80 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDN 80 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSS
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCC
Confidence 455555443 4589999999999999999999984 3589999999999999999998665 3454
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.2e-10 Score=87.11 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecC-HHHHHHHHHHhc--CccccCceeE
Q 019068 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN-VELASKAIDKLN--NTEFKGKKIR 174 (346)
Q Consensus 99 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--~~~~~g~~l~ 174 (346)
+.++.|||+||+.. ++.++|+.+|++||.|.+|.++++.. .|||.|.+ ..+|..|+..++ +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 46889999999999 99999999999999999999988743 59999999 899999999985 7889998888
Q ss_pred EeecC
Q 019068 175 CSTSQ 179 (346)
Q Consensus 175 v~~~~ 179 (346)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 86654
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.4e-10 Score=81.06 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=63.6
Q ss_pred CCCCEEEEcCCC----CCCCH----HHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 019068 99 PHGSEVYIGGIP----HDASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (346)
Q Consensus 99 ~~~~~l~v~nlp----~~~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 170 (346)
+...||+|.-.| .++-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+|+. |+|..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 456688888877 23444 6688999999999999998863 9999999999999997 99999999
Q ss_pred ceeEEeecCcc
Q 019068 171 KKIRCSTSQAK 181 (346)
Q Consensus 171 ~~l~v~~~~~~ 181 (346)
+.|+|..+.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998764
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=4.2e-10 Score=84.09 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=60.1
Q ss_pred cccceEEEEcCCCcc-cCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCC-HHHHHHHHHHhc--CcccCCC
Q 019068 272 ASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE-RSSAMKALKNTE--KYELDGD 345 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~Al~~ln--g~~i~gr 345 (346)
.+....|+|+||+.. ++.++|+++|+.||.|.+|.+.++. .+|||+|.+ ..+|..|+..|| |..|.|.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 344589999999999 9999999999999999999999986 479999999 899999999995 6666663
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=3.2e-10 Score=79.28 Aligned_cols=64 Identities=27% Similarity=0.271 Sum_probs=55.4
Q ss_pred cceEEEEcCCC----cccCH----HHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 274 QVKAVYVKNLP----RNVTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 274 ~~~~l~V~nLp----~~~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
+..||+|...| ..+.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|+. |||..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 34789998887 34444 6899999999999999998874 8999999999999999 999999998
Q ss_pred C
Q 019068 346 H 346 (346)
Q Consensus 346 ~ 346 (346)
.
T Consensus 77 ~ 77 (91)
T 2dnr_A 77 T 77 (91)
T ss_dssp E
T ss_pred E
Confidence 4
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.4e-09 Score=76.39 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=62.5
Q ss_pred CCCCCEEEEcCCCCC-----CCH----HHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 019068 98 PPHGSEVYIGGIPHD-----ASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (346)
Q Consensus 98 ~~~~~~l~v~nlp~~-----~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 168 (346)
-+...||+|.-++.. +-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+|+. |+|..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 356779999988743 333 5588999999999999999873 9999999999999997 999999
Q ss_pred cCceeEEeecC
Q 019068 169 KGKKIRCSTSQ 179 (346)
Q Consensus 169 ~g~~l~v~~~~ 179 (346)
.|+.|+|.+-.
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=3.5e-09 Score=89.33 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=53.4
Q ss_pred cCHHHHHHHhhccCcEEEEEeCCCC----CCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 287 VTQDQLKKLFEHHGRITKVVVPPAK----PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 287 ~t~~~L~~~F~~~G~v~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
-.+++|++.|++||.|.++.|+++. .++.++|++||+|.+.++|.+|++.|||++|+||+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 3568999999999999999998444 44477899999999999999999999999999995
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=8.7e-10 Score=77.40 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=56.0
Q ss_pred ccceEEEEcCCCcc-----cCH----HHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccC
Q 019068 273 SQVKAVYVKNLPRN-----VTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (346)
Q Consensus 273 ~~~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~ 343 (346)
++..||+|..++.. +.. .+|.+.|.+||.|..+++..++ +||+|.+.++|.+||. |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34479999998743 433 5799999999999999999885 9999999999999999 9999999
Q ss_pred CCC
Q 019068 344 GDH 346 (346)
Q Consensus 344 gr~ 346 (346)
||.
T Consensus 84 Gr~ 86 (95)
T 1ufw_A 84 GRA 86 (95)
T ss_dssp TEE
T ss_pred CeE
Confidence 984
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=1.1e-08 Score=86.11 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=67.1
Q ss_pred CCCEEEEcCCC-----CCCCHHHHHHHHHccCCeEEEEEeeCC----CCCCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 019068 100 HGSEVYIGGIP-----HDASEHDLRDFCQSIGEVTEVRIMKGK----DSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (346)
Q Consensus 100 ~~~~l~v~nlp-----~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 170 (346)
....+.+.|+- ..-.+++|+..|++||.|.++.++++. .+++++|++||+|.+.++|.+|+..|||..+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 44556665543 223567899999999999999998553 345899999999999999999999999999999
Q ss_pred ceeEEeecCc
Q 019068 171 KKIRCSTSQA 180 (346)
Q Consensus 171 ~~l~v~~~~~ 180 (346)
|.|.+.++..
T Consensus 203 r~i~~~~~~~ 212 (222)
T 3dxb_A 203 RKVVAEVYDQ 212 (222)
T ss_dssp SBCEEEECCH
T ss_pred eEEEEEEcCH
Confidence 9999998763
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.70 E-value=2.5e-08 Score=71.32 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=62.0
Q ss_pred eEEEEcCCCcccCHHHHHHHhhcc-----CcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHH-----GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
++|-+-|||-+++...|+.++.+| |.+..|.+.++. |-|+|+|.+...|.+|...|+|..|.||+
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 799999999999999999999999 999999999995 77999999999999999999999999984
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=4.7e-07 Score=64.78 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHcc-----CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
...++|-|-|||..++...|+.++..| |.|..+.++.+ .+-|+|+|.+...|.+|.-.|+|..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 348899999999999999999999999 99999999987 4569999999999999998999999999999
Q ss_pred EEeec
Q 019068 174 RCSTS 178 (346)
Q Consensus 174 ~v~~~ 178 (346)
++...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99543
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=8.7e-06 Score=57.84 Aligned_cols=87 Identities=18% Similarity=0.304 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHcc-----CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcee
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 173 (346)
...++|.|.|||+.+.++.|.-+|..- |.|..+.... +-|+|+|.+...|++.|+ -..+.+.|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 457799999999999999999999872 6788888743 569999999999999995 44788999999
Q ss_pred EEeecCc--cccceecCCCCCCC
Q 019068 174 RCSTSQA--KYRLFIGNIPRNWG 194 (346)
Q Consensus 174 ~v~~~~~--~~~l~v~~l~~~~~ 194 (346)
.|.+..+ ..+|++.+||+.++
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 9987665 46899999998764
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.87 E-value=6.1e-05 Score=52.90 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=58.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCC--CcceEEEEecCHHHHHHHHHHhcCcccc
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE--NKGFAFVTFRNVELASKAIDKLNNTEFK 169 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~~ 169 (346)
+.|.|++||+.+|++++.+.+..+..+....++..+.+.. ...-|||.|.+.+++......++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4689999999999999999999999888888877654432 3346999999999999999999999884
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.82 E-value=7.6e-05 Score=52.40 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=58.2
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCC--CCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
+.|.|++||+++|++++.+.+.....+..........+.. ...-|+|.|.+.+++..-...++|+.|-+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4799999999999999999999999888777766553322 234689999999999999999999987653
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.74 E-value=7.3e-05 Score=53.36 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=63.3
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCceeEE
Q 019068 101 GSEVYIGGIPHDA-S----EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (346)
Q Consensus 101 ~~~l~v~nlp~~~-~----~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 175 (346)
.++|+|.||+..+ . ...++.+|..|+++....+.+. -+-..|.|.+.++|.+|-..||+..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999766 2 2567899999999988777764 345799999999999999999999999999999
Q ss_pred eecCc
Q 019068 176 STSQA 180 (346)
Q Consensus 176 ~~~~~ 180 (346)
-++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 88873
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=4.1e-05 Score=54.63 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=54.9
Q ss_pred eEEEEcCCCccc-C----HHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNV-T----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~-t----~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
++|+|.||+..+ . .+.++.+|..|+.+....+.+.- .-..|.|.++++|.+|...|++..|.|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCc
Confidence 799999998876 2 26789999999988777766664 3589999999999999999999999986
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=0.00017 Score=52.95 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=54.5
Q ss_pred cccceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCC
Q 019068 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (346)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~g 344 (346)
....+.|.|-+.|... ...|...|++||.|.....+.. ..+..|.|.+..+|++||. .||..|+|
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 3345789999999874 6788999999999999887322 3699999999999999999 79999886
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=0.00053 Score=48.68 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=68.1
Q ss_pred cccceecCCCCCCCHHHHHHHHHhh----CCCeeEEEEeeCCCCCCCCccEEEEEeCChhHHHHHHHHhcCCcccCCCCC
Q 019068 181 KYRLFIGNIPRNWGSEDLQKVVSEV----GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (346)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~----g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 256 (346)
..+|.|.|||+.+.++.|.-+|.+- |..|..+.... +-|+|+|.+...|++.++. ....+++..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k---~~H~L~~~~ 75 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ---ADHELHGAQ 75 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC---SCCBSSSSB
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC---CcceecCeE
Confidence 4678889999999999999999982 33476666543 5789999999999887754 345688888
Q ss_pred ceeeecCCCCCCCcccccceEEEEcCCCcccC
Q 019068 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVT 288 (346)
Q Consensus 257 ~~v~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 288 (346)
+.|....+... .+|++++||+.++
T Consensus 76 LsV~P~~~~~~--------~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 76 LSLRPAPPRAP--------ARLLLQGLPPGTS 99 (104)
T ss_dssp CEEEECCCCCC--------CCCCCCSCCCCCC
T ss_pred EEEEcCCCCCc--------ceEeeecCCCCCC
Confidence 88876555443 6899999998764
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.60 E-value=0.00014 Score=50.96 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=46.7
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln 338 (346)
+.++| +.|+.+.-.+|.++|++||.| .|+++-+ .-|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 67777 999999999999999999964 6666666 479999999999999999763
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.47 E-value=0.00032 Score=49.34 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=47.7
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln 338 (346)
.+.++| +.|+.+.-.+|.++|++||. ..|+++-+ .-|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 366777 99999999999999999995 47777777 379999999999999999764
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.46 E-value=0.00043 Score=48.51 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=46.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 164 (346)
...+.++| ++|+.+.-.+|..+|+.||.| .|+.+.+ ..|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34566777 999999999999999999954 4555554 269999999999999998653
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.24 E-value=0.00059 Score=48.14 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=54.8
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCC--CCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
-.|.|+.||+++|++++.+.+.+.-.+.....+....+.. ...-|+|.|.+.++...-...++|+.|-+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 5899999999999999999998876665555554443322 123589999999999999999999887654
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.21 E-value=0.00065 Score=47.78 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=45.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc
Q 019068 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (346)
Q Consensus 102 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 164 (346)
+.++| ++|+.+.-.+|..+|+.|| -..|+.+.+ ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 445666654 269999999999999998664
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.08 E-value=0.00054 Score=48.30 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=52.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCC--CCcceEEEEecCHHHHHHHHHHhcCcccc
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS--ENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 169 (346)
.+-.|.|+.||+.+|++++.+.+..+-.+....++..+.+. ....-|||.|.+.++........+|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 35579999999999999988877776555444444333222 12235899999999999999999999884
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.96 E-value=0.0055 Score=44.96 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC-ceeEEeec
Q 019068 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KKIRCSTS 178 (346)
Q Consensus 100 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~ 178 (346)
..+-|.|-+.|+.. ...|..+|++||.|...... .....-+|.|.+..+|.+||. .||..+.| -.|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 45679999999985 67788999999999988762 235689999999999999995 89999975 56777776
Q ss_pred C
Q 019068 179 Q 179 (346)
Q Consensus 179 ~ 179 (346)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.36 E-value=0.0045 Score=46.06 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=48.9
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEE-EEeCCCC-------------CCCCCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAK-------------PGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~-------------~~~~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
.-|.|-+.|... ...+...|++||.|.. +.+.+.. +.....++.-|+|++..+|.+||+ .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 567777887554 5568889999999876 3332211 000123588999999999999999 99999
Q ss_pred cCCC
Q 019068 342 LDGD 345 (346)
Q Consensus 342 i~gr 345 (346)
|+|.
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 9873
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.12 E-value=0.0021 Score=59.11 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=41.8
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHH
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 335 (346)
++|+|. .|..+++.+|.++|+.||.|.++.+..+. ..||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 789998 79999999999999999999999987664 2499999999998887664
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.66 E-value=0.0066 Score=55.84 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=46.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 170 (346)
.++|+|. .|..+++.+|.++|++||+|.++.+-.+. .-||.|+|.+.+++..++. ..+....+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~-~~~~p~~~ 115 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN-GTHTPXXX 115 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS-SCCCCCCB
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh-ccCCCccc
Confidence 5789998 79999999999999999999999887653 4699999999999998874 33444433
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.39 E-value=0.019 Score=42.66 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeC-------------CCCC-CCcceEEEEecCHHHHHHHHHHhcCc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-------------KDSS-ENKGFAFVTFRNVELASKAIDKLNNT 166 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-------------~~~~-~~~g~afv~f~~~~~a~~a~~~l~~~ 166 (346)
...|.|-+.|+.. ...+-..|++||.|..-.-... +... .....-.|+|.++.+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 4568888887765 4567789999999865211110 0000 024467899999999999995 8999
Q ss_pred cccCceeEEeecCc
Q 019068 167 EFKGKKIRCSTSQA 180 (346)
Q Consensus 167 ~~~g~~l~v~~~~~ 180 (346)
.+.|..|-|.++.+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888888763
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.03 E-value=0.65 Score=43.47 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=47.1
Q ss_pred cceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhc
Q 019068 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (346)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ln 338 (346)
....++|+ .|..|...+|.++|+.||.| .|+++-+ ..|||.|.+.+.|..+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 34677776 99999999999999999964 6776665 379999999999999999884
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.80 E-value=1 Score=42.12 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=44.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhc
Q 019068 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (346)
Q Consensus 101 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 164 (346)
.+.++|+ +|..+...+|..+|+.||.+ +|+.+. ...|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHH
Confidence 3456665 99999999999999999954 555443 3469999999999999998775
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=62.85 E-value=33 Score=23.24 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=45.6
Q ss_pred ceEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcC
Q 019068 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng 339 (346)
.+-+-|-|+|..+-..++.-.....|---.+..+ -|-|+|.|.+.++-..|++.|-+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 3678899999999999888888888865455432 26799999999999999998643
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=56.30 E-value=13 Score=28.95 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=39.2
Q ss_pred eEEEEcCCCc-c--------cCHHHHHHHh--hccCcEEEEEeCCCCCCCCCCCEEEEEeCC-HHHHHHHHH
Q 019068 276 KAVYVKNLPR-N--------VTQDQLKKLF--EHHGRITKVVVPPAKPGQEKNRIGFVHFAE-RSSAMKALK 335 (346)
Q Consensus 276 ~~l~V~nLp~-~--------~t~~~L~~~F--~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~Al~ 335 (346)
-++.|-|+|. . .+...|++.| ..|.++ .|+.+....+ +.|+|.|.|.+ ...-..|++
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~G--h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLG--HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSB--EEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCC--CceeEEEEecCChHHHHHHHH
Confidence 3678889887 2 3457899977 999874 4555555544 35899999985 444455555
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=55.64 E-value=45 Score=22.56 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=48.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh
Q 019068 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163 (346)
Q Consensus 99 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 163 (346)
...+-|.|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.++...|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 357789999999999999988888888877777765 457999999999999999765
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=49.15 E-value=51 Score=21.27 Aligned_cols=61 Identities=10% Similarity=0.183 Sum_probs=36.7
Q ss_pred EEEEcCCC-cccCHHHHHHHhhccC-----cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCCC
Q 019068 277 AVYVKNLP-RNVTQDQLKKLFEHHG-----RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGDH 346 (346)
Q Consensus 277 ~l~V~nLp-~~~t~~~L~~~F~~~G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr~ 346 (346)
+|+|..-- ..+...+|..++..-+ .|-.|.|.. .|.||+-... .|..++..|++..+.|++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~ 68 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQ 68 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---C
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCce
Confidence 45553222 3456666666666443 266777743 3799998875 488899999999998874
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.16 E-value=49 Score=25.67 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=37.4
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--HccCCeEEEEEeeCCCCCCCcceEEEEecCHHH-HHHHH
Q 019068 103 EVYIGGIPH-D--------ASEHDLRDFC--QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL-ASKAI 160 (346)
Q Consensus 103 ~l~v~nlp~-~--------~~~~~l~~~f--~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~-a~~a~ 160 (346)
++.|-|+|. . .....|+..| +.|.++. |+.+.++ ..+.|++.|.|.+.-. -..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 567788887 2 3457899977 9999876 4444443 3478899999976443 33344
No 408
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=37.40 E-value=9.7 Score=28.92 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=18.4
Q ss_pred HHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeC
Q 019068 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (346)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 325 (346)
+++-++|...|.|..+.. .+||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 456677888888876653 2689999875
No 409
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=33.43 E-value=44 Score=23.64 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=28.4
Q ss_pred EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 302 v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
|.++..+..- +||.||+=.+..+...|++.+.+..
T Consensus 41 I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 41 IKSVVAPEHV-----KGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCEEEECTTC-----CSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred eEEEEecCCC-----ceEEEEEeCCHHHHHHHHhccccee
Confidence 6777776654 8999999999999999998776554
No 410
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=30.04 E-value=1e+02 Score=19.15 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=43.7
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcc
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~ 341 (346)
.++.|.++.-.--...|...+.. ..|..+.+-.. .+.+.|.|.+.+....+++. -|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~-~Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA-AGYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH-cCCc
Confidence 67899999877778889999988 77888877554 36788999866666777764 3443
No 411
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=23.48 E-value=2.2e+02 Score=20.72 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=36.6
Q ss_pred CCCcc-cCHHHHHHHhhccCc-EEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCccc
Q 019068 282 NLPRN-VTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (346)
Q Consensus 282 nLp~~-~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i 342 (346)
.+|.. =.-..+...+...|- |..+.... .. .++...+.+.+.+.|.++|+. .|+.+
T Consensus 78 ~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~---~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 78 SCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NN---NVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ET---TEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred EeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cC---CcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 44433 355678888887774 54544432 11 145677899999999999985 67765
No 412
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=23.42 E-value=1.8e+02 Score=21.55 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHccCCeEEEEEeeCCC-CCC--------------CcceEEEEecCHHHHHHHHHH
Q 019068 119 RDFCQSIGEVTEVRIMKGKD-SSE--------------NKGFAFVTFRNVELASKAIDK 162 (346)
Q Consensus 119 ~~~f~~~G~i~~~~~~~~~~-~~~--------------~~g~afv~f~~~~~a~~a~~~ 162 (346)
-.+|..||.+..+..+-+.. .|. .--|.||.|.+++...++...
T Consensus 51 ~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 51 APLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 46899999987776655421 122 122789999999999998853
No 413
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=21.82 E-value=1.5e+02 Score=26.76 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=39.5
Q ss_pred EEEEcCCCccc----CHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHHhcCcccCCC
Q 019068 277 AVYVKNLPRNV----TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGD 345 (346)
Q Consensus 277 ~l~V~nLp~~~----t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~lng~~i~gr 345 (346)
--+|+||+.-. ....+.++..+||.|..+++. +.-+|...+++.|..++. -++..+.+|
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~-~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLI-KKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT-TTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHH-hCcHhhCCC
Confidence 34677775321 246688888999999999872 235677788888888886 344444443
No 414
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.60 E-value=63 Score=21.89 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=17.0
Q ss_pred EEEEEeCCCCCCCCCCCEEEEEeCC
Q 019068 302 ITKVVVPPAKPGQEKNRIGFVHFAE 326 (346)
Q Consensus 302 v~~v~i~~~~~~~~~~g~afV~f~~ 326 (346)
|..|++.+-...+.-++||-|+|++
T Consensus 6 iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 6 VTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp EEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEcCCCCCEEEEEEEEECC
Confidence 6666666666566667788777765
No 415
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.25 E-value=2e+02 Score=19.30 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=35.6
Q ss_pred CCCcccCHHHHHHHhhc-cC-cEEEEEeCCCCCCCCCCCEEEEEeCCHHHHHHHHHH
Q 019068 282 NLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (346)
Q Consensus 282 nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 336 (346)
.+....+..+|++.++. || .|..|..+..+.+ .--|||++..-.+|......
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~---~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG---EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS---CEEEEEEECTTSCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC---ceEEEEEcCCCCcHHHHHHh
Confidence 34667899999988876 45 3666665554422 23599999988877766553
No 416
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=25.56 E-value=22 Score=25.23 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=36.2
Q ss_pred eEEEEcCCCcccCHHHHHHHhhccCcEEEEEeCCCCCCCCCCCEE--EEEeCCHHHHHHHHHHhcC
Q 019068 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG--FVHFAERSSAMKALKNTEK 339 (346)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~a--fV~f~~~~~A~~Al~~lng 339 (346)
.||-|... .+.+.|..+....+ +..+.+.+....+. .-|. +=.|.|.++|.+|+..|-.
T Consensus 26 YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk-~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 26 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQ-PWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 55555444 34566777777766 34455555433322 1233 4489999999999998754
Done!