Query 019070
Match_columns 346
No_of_seqs 106 out of 121
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 10:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4av3_A K(+)-stimulated pyropho 44.3 58 0.002 34.8 8.2 36 225-260 68-105 (735)
2 3dl8_C SECE; RECA-type ATPase 40.4 22 0.00075 26.4 3.2 39 216-254 23-61 (65)
3 2wsc_1 AT3G54890, LHCA1; photo 26.6 19 0.00064 33.5 0.9 20 36-55 48-67 (241)
4 3din_D Preprotein translocase 22.9 18 0.00062 26.9 0.1 38 217-254 24-61 (65)
5 2zjs_E Preprotein translocase 22.7 11 0.00038 27.5 -1.1 35 217-251 25-59 (60)
6 3lto_A Mevalonate diphosphate 18.7 27 0.00091 33.3 0.2 16 58-73 8-23 (323)
7 2bhw_A Chlorophyll A-B binding 17.9 1.1E+02 0.0038 28.0 4.2 15 41-55 31-45 (232)
8 4ezc_A UREA transporter 1; mem 15.3 1.4E+02 0.0046 29.5 4.3 44 227-270 72-115 (384)
9 1jeg_B Hematopoietic cell prot 14.6 84 0.0029 20.1 1.7 20 17-37 3-22 (26)
10 1jb0_L Photosystem 1 reaction 13.1 3.3E+02 0.011 23.9 5.7 27 241-267 119-148 (154)
No 1
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=44.26 E-value=58 Score=34.84 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=26.3
Q ss_pred HHHHHHHhHhhhccCHHHHHHHHHHHHHHHH--HHHHH
Q 019070 225 GIGGVGLVSAYISYSPEIAASFAAGLLGSLV--YIRML 260 (346)
Q Consensus 225 ~igavg~~~~~l~ys~~~AlSyllGa~gGll--YLrLL 260 (346)
.++.+.++..+++.+..++++|++|++.|.+ |+-|-
T Consensus 68 ~~~vv~~~ll~~~~~~~~ai~Fl~Ga~~S~~aGyiGM~ 105 (735)
T 4av3_A 68 KVAIVIAILLMIFTTWQTGVAFLLGAVMSASAGIVGMK 105 (735)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556667899999999999998876 66553
No 2
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=40.38 E-value=22 Score=26.44 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHH
Q 019070 216 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 254 (346)
Q Consensus 216 K~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGl 254 (346)
|+++..+|+++..+..+.+.+++..+..+++++..+-|+
T Consensus 23 r~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3dl8_C 23 RELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSL 61 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888877777777777788888877777655443
No 3
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=26.59 E-value=19 Score=33.49 Aligned_cols=20 Identities=30% Similarity=0.747 Sum_probs=6.4
Q ss_pred ccCCcCccccccCCCCCCCC
Q 019070 36 LLPKKKSMKWSTGVAPGEYG 55 (346)
Q Consensus 36 ~~~~~k~~~w~~g~~pg~yg 55 (346)
.+|--.+-.+-+|..||+||
T Consensus 48 w~P~~~~P~~L~G~~pgd~g 67 (241)
T 2wsc_1 48 WMPGEPRPAYLDGSAPGDFG 67 (241)
T ss_dssp -------------CTTSSCC
T ss_pred cCCCCCCcccccCCCCCcCC
Confidence 46765556788899999998
No 4
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=22.91 E-value=18 Score=26.89 Aligned_cols=38 Identities=8% Similarity=-0.180 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHH
Q 019070 217 SKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 254 (346)
Q Consensus 217 ~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGl 254 (346)
+++..+|+++..+..+.+.+++..+..+++++..+-|+
T Consensus 24 ~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3din_D 24 KELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA 61 (65)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777777777777778888887777665544
No 5
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=22.74 E-value=11 Score=27.53 Aligned_cols=35 Identities=23% Similarity=0.010 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHH
Q 019070 217 SKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLL 251 (346)
Q Consensus 217 ~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~ 251 (346)
+++..+|+++..+..+.+.+++..+..+++++..+
T Consensus 25 ~e~~~~t~vViv~v~i~~~~~~~vD~~~~~~~~~i 59 (60)
T 2zjs_E 25 EQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59 (60)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777766767777777777666543
No 6
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=18.73 E-value=27 Score=33.26 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=14.1
Q ss_pred CCccccccccCCCCCC
Q 019070 58 PTTTKLRKFWGGEKED 73 (346)
Q Consensus 58 p~~~~~~~~~~~~~~d 73 (346)
|+++-+-|||||.|+.
T Consensus 8 ~~nialiKYwGk~d~~ 23 (323)
T 3lto_A 8 PANIALIKYMGKKDEN 23 (323)
T ss_dssp EEEEEEECCTTCBCTT
T ss_pred cchhHHhHhcCccccc
Confidence 6788899999999887
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=17.94 E-value=1.1e+02 Score=27.97 Aligned_cols=15 Identities=47% Similarity=0.873 Sum_probs=12.5
Q ss_pred CccccccCCCCCCCC
Q 019070 41 KSMKWSTGVAPGEYG 55 (346)
Q Consensus 41 k~~~w~~g~~pg~yg 55 (346)
.+-.+-+|.-||+||
T Consensus 31 ~~P~~LdG~~pGD~G 45 (232)
T 2bhw_A 31 ESPSYLTGEFPGDYG 45 (232)
T ss_dssp SCCTTCCSCSTTCCS
T ss_pred CCccccCCcCCCCCC
Confidence 445788999999998
No 8
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=15.26 E-value=1.4e+02 Score=29.50 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHhHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 019070 227 GGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAG 270 (346)
Q Consensus 227 gavg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~g 270 (346)
+++++....+..++..|+..++|++.|.+--++|+.+-+.+..|
T Consensus 72 sGlliLigl~i~sp~~al~allG~~vstltA~llg~~~~~I~~G 115 (384)
T 4ezc_A 72 SGILILVGLLVQNPWCALNGCVGTVVSTLTALLLSQDRSAITAG 115 (384)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCHHHHHcc
Confidence 34445555556899999999999999999999999887777554
No 9
>1jeg_B Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP; SH3 domain, protein-peptide complex, kinase, transferase/hydrolase complex; NMR {Mus musculus}
Probab=14.59 E-value=84 Score=20.14 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCCCccccc
Q 019070 17 SQDSSSTSSSVPTTRPTKILL 37 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (346)
.+|..+ +++.|++++.++||
T Consensus 3 ~~d~~~-Ppplp~rtpesfil 22 (26)
T 1jeg_B 3 RTDDEI-PPPLPERTPESFIV 22 (26)
T ss_pred ccccCC-CCCccccCcchhee
Confidence 445554 66778888888876
No 10
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=13.05 E-value=3.3e+02 Score=23.94 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hhhh
Q 019070 241 EIAASFAAGLLGSLVYIRMLGST---VDSM 267 (346)
Q Consensus 241 ~~AlSyllGa~gGllYLrLL~rs---VD~L 267 (346)
+-+-.|++|+++|-+.-.+|-.. +|.+
T Consensus 119 ~Ft~GF~iGg~GGa~~Ay~Ll~~~~~i~~i 148 (154)
T 1jb0_L 119 QFTAGFFVGAMGSAFVAFFLLENFLVVDGI 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HcccceeeecccHHHHHHHHHhcccchHHH
Confidence 45677999999986655555433 5655
Done!