Query 019070
Match_columns 346
No_of_seqs 106 out of 121
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 10:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019070.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019070hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rwta_ f.43.1.1 (A:) Chloroph 28.8 6.8 0.0005 33.0 0.6 25 36-76 11-37 (218)
2 d1fi4a1 d.14.1.5 (A:3-190) Mev 19.5 10 0.00076 31.6 -0.1 16 58-73 9-24 (188)
3 d2co5a1 a.4.5.48 (A:5-93) STIV 9.3 40 0.0029 24.7 0.6 31 188-218 53-83 (89)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 8.1 2.7E+02 0.02 23.4 5.8 29 309-337 53-81 (248)
5 d2nrka1 d.218.1.14 (A:4-170) H 6.6 1.1E+02 0.0079 24.2 2.2 15 207-221 123-137 (167)
6 d1vi0a2 a.121.1.1 (A:78-194) H 6.2 3.4E+02 0.025 18.2 4.7 25 238-262 70-94 (117)
7 d1pz1a_ c.1.7.1 (A:) Putative 5.4 1.4E+02 0.011 24.5 2.4 48 116-173 283-331 (333)
8 d1v54j_ f.23.4.1 (J:) Mitochon 5.4 1.9E+02 0.014 19.8 2.6 18 219-236 31-48 (58)
9 d1l7va_ f.22.1.1 (A:) ABC tran 5.3 3E+02 0.022 23.7 4.5 22 210-231 226-247 (324)
10 d1bdsa_ g.9.1.1 (A:) BDs-I def 4.8 1.3E+02 0.0092 19.3 1.2 11 46-56 18-28 (43)
No 1
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=28.78 E-value=6.8 Score=33.00 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=20.1
Q ss_pred ccC--CcCccccccCCCCCCCCCCCCccccccccCCCCCCCCC
Q 019070 36 LLP--KKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLT 76 (346)
Q Consensus 36 ~~~--~~k~~~w~~g~~pg~ygg~p~~~~~~~~~~~~~~dp~~ 76 (346)
.|| ..++-.|-.|.-||||| +||+.
T Consensus 11 ~~~~~~~~~P~~LdGs~pGD~G----------------FDPLg 37 (218)
T d1rwta_ 11 YLGPFSGESPSYLTGEFPGDYG----------------WDTAG 37 (218)
T ss_dssp TTGGGGCSCCTTCCSCSTTCCS----------------CCTTC
T ss_pred cCCccccCCCcccCCCCCCCCC----------------cCCcc
Confidence 455 44555899999999999 79999
No 2
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.54 E-value=10 Score=31.61 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=13.7
Q ss_pred CCccccccccCCCCCC
Q 019070 58 PTTTKLRKFWGGEKED 73 (346)
Q Consensus 58 p~~~~~~~~~~~~~~d 73 (346)
|.++-+=|||||-+++
T Consensus 9 psNIALiKYWGK~d~~ 24 (188)
T d1fi4a1 9 PVNIATLKYWGKRDTK 24 (188)
T ss_dssp CCEEEEECCCCEEETT
T ss_pred cCcEEEEEeccccCcc
Confidence 7889999999997655
No 3
>d2co5a1 a.4.5.48 (A:5-93) STIV F93 {Sulfolobus turreted icosahedral virus [TaxId: 269145]}
Probab=9.29 E-value=40 Score=24.71 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=22.9
Q ss_pred chhhhcccCCCCChHHHHHHhHHHHHHHHHH
Q 019070 188 DVMFRELRKPRGDPEVLAAQSKEQYFKLKSK 218 (346)
Q Consensus 188 ~v~~~e~~~~~~dp~~~aaesm~EY~~LK~~ 218 (346)
+.++||-+.+++.---+.+.+|.||+.|..-
T Consensus 53 dkilreeeapdgkvlfltekgmkefeelhef 83 (89)
T d2co5a1 53 DKILREEEAPDGKVLFLTEKGMKEFEELHEF 83 (89)
T ss_dssp TTSEEEECCTTSCEEEECHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCceEEEEehhhhHHHHHHHHH
Confidence 5567777777666655678899999998653
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.12 E-value=2.7e+02 Score=23.39 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=23.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019070 309 HLELIPMLVGFFTYKIATFFQAVEEAVSI 337 (346)
Q Consensus 309 ~LeLlP~llGFLTYK~AlLvqa~rdv~~~ 337 (346)
..-++|++++++++-+--+++++.-.+..
T Consensus 53 ~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTN 81 (248)
T d2r6gf1 53 WRYVYPGMAGMGLFVLFPLVCTIAIAFTN 81 (248)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHGGGBC
T ss_pred eehhhhHHHHHHHHHHHhheeEEEEEEEE
Confidence 57799999999999998888887766554
No 5
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]}
Probab=6.64 E-value=1.1e+02 Score=24.16 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHHHH
Q 019070 207 QSKEQYFKLKSKLQF 221 (346)
Q Consensus 207 esm~EY~~LK~~LLl 221 (346)
+..++|.+||++|..
T Consensus 123 ~~~~~Y~~lK~~la~ 137 (167)
T d2nrka1 123 AIATTYGTLKKQLAQ 137 (167)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 467899999999854
No 6
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=6.19 E-value=3.4e+02 Score=18.20 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Q 019070 238 YSPEIAASFAAGLLGSLVYIRMLGS 262 (346)
Q Consensus 238 ys~~~AlSyllGa~gGllYLrLL~r 262 (346)
.+++.+...++|++.+++|--++..
T Consensus 70 ~d~~~~a~~i~g~i~~~~~~w~~~~ 94 (117)
T d1vi0a2 70 LDVRLARQMIFGTIDETVTTWVMND 94 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999998666643
No 7
>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]}
Probab=5.42 E-value=1.4e+02 Score=24.53 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=26.5
Q ss_pred eeeccc-ccccccccchHhhhhhhhhhcchhhHHhhhhccccCCCCCCcccCCcChHHH
Q 019070 116 SLNRVM-SLDSLEVDLSKELTADSKTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQ 173 (346)
Q Consensus 116 sl~R~~-~lds~dvdls~el~~~~~~~~~~q~~a~~~~~~~~~~~~~~~w~~aPTr~Eq 173 (346)
+..++. .|+.++.+||+|-++. +++...... .+...+.|..+|++.|+
T Consensus 283 ~~~~l~enl~a~~~~Ls~ee~~~--------i~~i~~~~~--~~p~~p~~~~pp~~~~~ 331 (333)
T d1pz1a_ 283 KPGQLEALSEITGWTLNSEDQKD--------INTILENTI--SDPVGPEFMAPPTREEI 331 (333)
T ss_dssp SGGGGTTCTTSSSCCCCHHHHHH--------HHHHHHHHC--SSCCCSGGGCCCCTTSS
T ss_pred CHHHHHHHHHHCCCCCCHHHHHH--------HHHHhhccC--CCCCCcCCCCCCccCCC
Confidence 344442 3567788999888752 222222111 13334788888888653
No 8
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.38 E-value=1.9e+02 Score=19.80 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHhhh
Q 019070 219 LQFLTLGIGGVGLVSAYI 236 (346)
Q Consensus 219 LLl~Tl~igavg~~~~~l 236 (346)
|...|.+++++|++++..
T Consensus 31 LYr~Tm~L~~~G~~~s~~ 48 (58)
T d1v54j_ 31 LYRVTMTLCLGGTLYSLY 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788888877776543
No 9
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=5.25 E-value=3e+02 Score=23.65 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019070 210 EQYFKLKSKLQFLTLGIGGVGL 231 (346)
Q Consensus 210 ~EY~~LK~~LLl~Tl~igavg~ 231 (346)
-++.+.|..++..+..++++..
T Consensus 226 v~v~~~r~~~l~~~~ll~a~~v 247 (324)
T d1l7va_ 226 LPLWFWRNVLVAATGWMVGVSV 247 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4577788888877766665544
No 10
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=4.81 E-value=1.3e+02 Score=19.34 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=9.1
Q ss_pred ccCCCCCCCCC
Q 019070 46 STGVAPGEYGG 56 (346)
Q Consensus 46 ~~g~~pg~ygg 56 (346)
-.|+-||.||=
T Consensus 18 lrgtcpggygy 28 (43)
T d1bdsa_ 18 LRGTCPGGYGY 28 (43)
T ss_dssp SCSSCCTTTCC
T ss_pred EecccCCCccc
Confidence 37999999984
Done!