Query 019071
Match_columns 346
No_of_seqs 259 out of 1178
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 9.7E-63 2.1E-67 445.7 14.5 166 1-168 1-188 (189)
2 PF00170 bZIP_1: bZIP transcri 99.5 1.1E-13 2.5E-18 105.3 9.2 64 250-313 1-64 (64)
3 smart00338 BRLZ basic region l 99.4 5.2E-13 1.1E-17 101.9 8.9 62 252-313 3-64 (65)
4 KOG3584 cAMP response element 99.3 2.2E-12 4.7E-17 124.1 8.6 63 244-306 281-343 (348)
5 KOG4005 Transcription factor X 99.3 1.1E-11 2.3E-16 116.7 10.5 80 252-333 67-146 (292)
6 KOG4343 bZIP transcription fac 99.2 5.3E-11 1.1E-15 122.1 9.9 71 246-316 273-343 (655)
7 KOG0709 CREB/ATF family transc 99.2 3.3E-11 7.2E-16 122.0 7.2 76 248-323 245-320 (472)
8 PF07716 bZIP_2: Basic region 99.2 1.9E-10 4.2E-15 85.1 8.8 50 254-304 5-54 (54)
9 KOG0837 Transcriptional activa 98.7 1.1E-07 2.3E-12 90.9 9.3 68 243-310 195-262 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.5 2.2E-09 4.7E-14 87.6 -6.4 67 249-315 25-91 (92)
11 KOG4571 Activating transcripti 98.3 3.4E-06 7.3E-11 81.9 10.1 56 256-311 229-284 (294)
12 PF07777 MFMR: G-box binding p 98.2 9.2E-06 2E-10 74.8 9.4 128 30-178 22-184 (189)
13 KOG3119 Basic region leucine z 98.1 7.7E-06 1.7E-10 78.8 7.6 57 255-311 195-251 (269)
14 KOG4196 bZIP transcription fac 97.7 0.00028 6E-09 61.6 10.0 67 251-324 50-116 (135)
15 KOG3863 bZIP transcription fac 97.5 0.00018 3.9E-09 76.1 6.8 74 253-326 489-563 (604)
16 PF06156 DUF972: Protein of un 97.0 0.0039 8.5E-08 52.8 7.9 50 275-324 8-57 (107)
17 PRK10884 SH3 domain-containing 96.8 0.016 3.4E-07 54.2 11.5 71 250-320 99-170 (206)
18 PRK13169 DNA replication intia 96.8 0.0068 1.5E-07 51.7 7.9 49 275-323 8-56 (110)
19 TIGR02449 conserved hypothetic 96.6 0.015 3.3E-07 45.3 7.9 57 275-333 7-63 (65)
20 PF06005 DUF904: Protein of un 96.5 0.018 3.9E-07 45.6 8.1 28 277-304 6-33 (72)
21 TIGR02894 DNA_bind_RsfA transc 96.5 0.0093 2E-07 54.0 7.2 52 283-336 98-149 (161)
22 PF10224 DUF2205: Predicted co 96.2 0.026 5.7E-07 45.7 7.8 49 277-325 18-66 (80)
23 COG3074 Uncharacterized protei 96.2 0.023 5E-07 45.1 7.1 55 276-332 19-73 (79)
24 KOG4005 Transcription factor X 96.1 0.056 1.2E-06 52.0 10.4 86 244-331 62-153 (292)
25 PF06005 DUF904: Protein of un 96.0 0.051 1.1E-06 43.1 8.2 47 276-322 19-65 (72)
26 PRK15422 septal ring assembly 96.0 0.037 8E-07 44.7 7.4 58 275-334 18-75 (79)
27 PF02183 HALZ: Homeobox associ 95.7 0.028 6.1E-07 40.8 5.3 38 286-323 2-39 (45)
28 KOG1414 Transcriptional activa 95.7 0.00043 9.4E-09 70.0 -5.9 68 245-312 145-216 (395)
29 PF08614 ATG16: Autophagy prot 95.6 0.16 3.5E-06 46.5 10.9 70 255-324 117-186 (194)
30 PF13747 DUF4164: Domain of un 95.5 0.26 5.6E-06 40.4 10.9 74 250-323 7-80 (89)
31 COG4467 Regulator of replicati 95.5 0.058 1.3E-06 46.1 7.1 47 275-321 8-54 (114)
32 PF04102 SlyX: SlyX; InterPro 95.4 0.081 1.8E-06 41.2 7.2 51 274-324 3-53 (69)
33 TIGR02449 conserved hypothetic 95.3 0.083 1.8E-06 41.3 7.0 47 277-323 2-48 (65)
34 PRK13729 conjugal transfer pil 95.3 0.082 1.8E-06 55.1 9.0 49 275-323 76-124 (475)
35 COG3074 Uncharacterized protei 95.3 0.1 2.2E-06 41.5 7.5 53 273-325 23-75 (79)
36 PRK10884 SH3 domain-containing 95.1 0.33 7.1E-06 45.5 11.7 57 270-326 113-169 (206)
37 COG4026 Uncharacterized protei 95.1 0.13 2.7E-06 49.4 8.9 54 271-324 138-191 (290)
38 PRK15422 septal ring assembly 94.8 0.15 3.3E-06 41.2 7.3 51 274-324 24-74 (79)
39 PRK00295 hypothetical protein; 94.7 0.23 5E-06 38.8 8.0 49 275-323 5-53 (68)
40 PRK04325 hypothetical protein; 94.7 0.23 4.9E-06 39.5 8.0 49 275-323 9-57 (74)
41 PRK02793 phi X174 lysis protei 94.7 0.22 4.8E-06 39.3 7.9 51 274-324 7-57 (72)
42 PRK02119 hypothetical protein; 94.7 0.23 4.9E-06 39.4 8.0 50 274-323 8-57 (73)
43 PRK00736 hypothetical protein; 94.7 0.23 5.1E-06 38.7 7.9 49 275-323 5-53 (68)
44 KOG1853 LIS1-interacting prote 94.6 0.34 7.4E-06 47.2 10.6 79 257-337 27-123 (333)
45 KOG4196 bZIP transcription fac 94.6 0.3 6.5E-06 43.0 9.1 33 292-324 77-109 (135)
46 PF11559 ADIP: Afadin- and alp 94.6 0.51 1.1E-05 41.3 10.8 70 254-323 45-114 (151)
47 PRK04406 hypothetical protein; 94.5 0.27 5.9E-06 39.2 8.1 49 275-323 11-59 (75)
48 PF02183 HALZ: Homeobox associ 94.4 0.18 3.9E-06 36.6 6.2 42 279-320 2-43 (45)
49 PF10473 CENP-F_leu_zip: Leuci 94.4 0.69 1.5E-05 41.1 11.2 68 256-323 33-100 (140)
50 TIGR00219 mreC rod shape-deter 93.9 0.12 2.6E-06 50.3 6.1 39 284-322 68-110 (283)
51 PRK00846 hypothetical protein; 93.9 0.39 8.5E-06 38.7 7.9 50 274-323 12-61 (77)
52 PF04880 NUDE_C: NUDE protein, 93.9 0.089 1.9E-06 48.0 4.8 43 277-323 2-44 (166)
53 PF10186 Atg14: UV radiation r 93.7 0.86 1.9E-05 42.9 11.3 52 269-320 57-108 (302)
54 KOG1962 B-cell receptor-associ 93.7 0.45 9.6E-06 45.2 9.2 50 272-321 162-211 (216)
55 PF07888 CALCOCO1: Calcium bin 93.7 0.68 1.5E-05 49.3 11.4 63 259-321 155-217 (546)
56 PRK11637 AmiB activator; Provi 93.6 0.87 1.9E-05 46.3 11.9 56 268-323 68-123 (428)
57 PF06156 DUF972: Protein of un 93.6 0.3 6.5E-06 41.5 7.2 53 279-333 5-57 (107)
58 PF09726 Macoilin: Transmembra 93.0 0.75 1.6E-05 50.3 10.8 42 277-318 540-581 (697)
59 KOG1414 Transcriptional activa 92.9 0.018 3.8E-07 58.5 -1.6 56 255-316 286-341 (395)
60 PRK13922 rod shape-determining 92.8 0.66 1.4E-05 44.3 9.1 38 284-321 71-111 (276)
61 PRK11637 AmiB activator; Provi 92.8 1.2 2.6E-05 45.3 11.4 46 274-319 81-126 (428)
62 KOG3119 Basic region leucine z 92.6 0.53 1.1E-05 45.7 8.2 44 263-306 210-253 (269)
63 COG2433 Uncharacterized conser 92.5 0.42 9.1E-06 51.3 7.9 46 275-320 422-467 (652)
64 KOG1029 Endocytic adaptor prot 92.5 1.1 2.3E-05 49.6 10.9 12 35-46 82-93 (1118)
65 smart00338 BRLZ basic region l 92.2 1.4 2.9E-05 33.4 8.3 39 282-320 26-64 (65)
66 PF14197 Cep57_CLD_2: Centroso 92.1 1.1 2.3E-05 35.3 7.8 48 275-322 12-66 (69)
67 PRK04406 hypothetical protein; 92.1 1.3 2.8E-05 35.3 8.4 55 277-333 6-60 (75)
68 KOG3650 Predicted coiled-coil 92.0 0.66 1.4E-05 39.4 6.9 46 280-325 61-106 (120)
69 PF07106 TBPIP: Tat binding pr 92.0 0.55 1.2E-05 41.9 7.0 52 273-324 84-137 (169)
70 TIGR03752 conj_TIGR03752 integ 92.0 0.54 1.2E-05 49.2 7.8 36 287-322 107-142 (472)
71 KOG3335 Predicted coiled-coil 92.0 0.22 4.7E-06 45.9 4.4 43 254-302 91-133 (181)
72 PF11932 DUF3450: Protein of u 91.9 2.7 5.9E-05 39.8 11.9 55 268-322 49-103 (251)
73 COG4026 Uncharacterized protei 91.9 0.73 1.6E-05 44.3 7.9 46 263-308 151-196 (290)
74 PF03962 Mnd1: Mnd1 family; I 91.9 0.82 1.8E-05 42.1 8.1 16 305-320 112-127 (188)
75 PRK10803 tol-pal system protei 91.9 1.3 2.8E-05 42.7 9.8 47 276-322 55-101 (263)
76 PF11932 DUF3450: Protein of u 91.8 2.8 6.1E-05 39.7 12.0 48 276-323 50-97 (251)
77 PF08172 CASP_C: CASP C termin 91.8 0.72 1.6E-05 44.4 8.0 38 287-324 98-135 (248)
78 PRK02119 hypothetical protein; 91.6 1.5 3.2E-05 34.8 8.3 57 276-334 3-59 (73)
79 TIGR02209 ftsL_broad cell divi 91.6 0.55 1.2E-05 37.0 5.8 42 290-331 25-66 (85)
80 PF04977 DivIC: Septum formati 91.6 0.44 9.5E-06 36.6 5.1 27 275-301 24-50 (80)
81 PRK00888 ftsB cell division pr 91.5 0.76 1.7E-05 38.7 6.9 34 271-304 30-63 (105)
82 PRK13169 DNA replication intia 91.5 0.83 1.8E-05 39.1 7.2 51 279-331 5-55 (110)
83 PF12718 Tropomyosin_1: Tropom 91.4 1 2.2E-05 39.8 7.9 44 277-320 16-59 (143)
84 PF11559 ADIP: Afadin- and alp 91.4 4.2 9E-05 35.5 11.7 47 274-320 79-125 (151)
85 COG4942 Membrane-bound metallo 91.4 1.6 3.5E-05 45.1 10.3 73 254-326 38-110 (420)
86 COG1579 Zn-ribbon protein, pos 91.2 2.8 6E-05 40.4 11.1 37 263-299 40-76 (239)
87 PF07888 CALCOCO1: Calcium bin 91.2 2.6 5.6E-05 45.0 11.9 48 275-322 178-225 (546)
88 PF13851 GAS: Growth-arrest sp 91.2 3.8 8.3E-05 38.1 11.8 62 248-309 66-127 (201)
89 COG2900 SlyX Uncharacterized p 91.1 1.8 3.8E-05 34.6 8.1 51 274-324 7-57 (72)
90 PF05266 DUF724: Protein of un 91.1 2.2 4.8E-05 39.5 10.1 53 254-306 89-141 (190)
91 PF00170 bZIP_1: bZIP transcri 90.9 3.1 6.7E-05 31.5 9.1 37 282-318 26-62 (64)
92 KOG1029 Endocytic adaptor prot 90.9 1.9 4.2E-05 47.8 10.7 10 272-281 397-406 (1118)
93 PF08317 Spc7: Spc7 kinetochor 90.8 2 4.2E-05 42.5 10.1 46 275-320 209-254 (325)
94 KOG4343 bZIP transcription fac 90.8 0.93 2E-05 48.2 8.1 38 288-325 301-338 (655)
95 PF07106 TBPIP: Tat binding pr 90.8 0.74 1.6E-05 41.1 6.5 23 279-301 113-135 (169)
96 PF12711 Kinesin-relat_1: Kine 90.7 1.1 2.4E-05 36.9 6.8 38 286-323 21-64 (86)
97 PF09726 Macoilin: Transmembra 90.7 1.7 3.8E-05 47.5 10.4 34 269-306 543-576 (697)
98 KOG0982 Centrosomal protein Nu 90.6 2.3 4.9E-05 44.3 10.5 49 275-323 297-345 (502)
99 PF04156 IncA: IncA protein; 90.6 4.4 9.5E-05 36.4 11.5 56 267-322 122-177 (191)
100 KOG2264 Exostosin EXT1L [Signa 90.6 1.2 2.7E-05 47.8 8.7 58 274-333 92-149 (907)
101 PF08172 CASP_C: CASP C termin 90.4 1.1 2.3E-05 43.2 7.7 44 274-317 92-135 (248)
102 TIGR02894 DNA_bind_RsfA transc 90.4 3.1 6.8E-05 37.9 10.1 35 275-309 111-145 (161)
103 PF04102 SlyX: SlyX; InterPro 90.4 1.7 3.7E-05 33.8 7.4 52 279-332 1-52 (69)
104 PRK02793 phi X174 lysis protei 90.3 2.3 5.1E-05 33.5 8.2 56 278-335 4-59 (72)
105 PF10186 Atg14: UV radiation r 90.2 4.1 8.8E-05 38.4 11.3 35 271-305 66-100 (302)
106 PF10211 Ax_dynein_light: Axon 90.1 2.1 4.5E-05 39.5 9.0 56 277-333 122-177 (189)
107 PF05377 FlaC_arch: Flagella a 90.1 1.3 2.8E-05 33.7 6.2 39 277-315 2-40 (55)
108 PF12709 Kinetocho_Slk19: Cent 90.1 1.7 3.7E-05 35.9 7.4 45 273-317 40-84 (87)
109 PF12329 TMF_DNA_bd: TATA elem 90.0 2.1 4.6E-05 33.9 7.8 51 273-323 10-60 (74)
110 PF09304 Cortex-I_coil: Cortex 89.9 1.6 3.4E-05 37.4 7.3 53 259-311 21-73 (107)
111 KOG0977 Nuclear envelope prote 89.9 2.1 4.6E-05 45.7 9.9 60 265-324 131-190 (546)
112 PF01166 TSC22: TSC-22/dip/bun 89.9 0.34 7.4E-06 37.2 3.0 41 289-333 14-54 (59)
113 PF05266 DUF724: Protein of un 89.8 5.2 0.00011 37.1 11.4 49 273-321 129-177 (190)
114 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.8 7.2 0.00016 33.7 11.6 33 290-322 99-131 (132)
115 PRK00888 ftsB cell division pr 89.7 1.4 3.1E-05 37.0 7.0 36 276-311 28-63 (105)
116 COG3883 Uncharacterized protei 89.7 1.4 3E-05 43.1 7.8 55 269-323 53-111 (265)
117 PF04728 LPP: Lipoprotein leuc 89.7 3.3 7.2E-05 31.6 8.2 48 275-322 3-50 (56)
118 PF15294 Leu_zip: Leucine zipp 89.7 1 2.2E-05 44.3 6.9 45 280-324 130-174 (278)
119 PF06785 UPF0242: Uncharacteri 89.6 3.2 7E-05 42.0 10.4 52 270-321 122-173 (401)
120 PF09738 DUF2051: Double stran 89.6 1.5 3.3E-05 43.5 8.1 72 251-322 89-166 (302)
121 PRK00846 hypothetical protein; 89.6 2.1 4.6E-05 34.5 7.5 58 278-337 9-66 (77)
122 PF12325 TMF_TATA_bd: TATA ele 89.5 2 4.3E-05 37.2 7.8 66 250-315 19-87 (120)
123 KOG0250 DNA repair protein RAD 89.5 3 6.5E-05 47.5 11.1 57 266-322 370-427 (1074)
124 COG1579 Zn-ribbon protein, pos 89.4 3.8 8.1E-05 39.5 10.4 51 273-323 87-137 (239)
125 PF07412 Geminin: Geminin; In 89.3 1.1 2.4E-05 42.1 6.6 14 311-324 157-170 (200)
126 PF14197 Cep57_CLD_2: Centroso 89.3 2.7 5.9E-05 33.0 7.8 26 278-303 8-33 (69)
127 PF08647 BRE1: BRE1 E3 ubiquit 88.9 8.2 0.00018 31.8 10.8 68 256-323 5-72 (96)
128 PF10805 DUF2730: Protein of u 88.9 1.6 3.4E-05 36.7 6.6 43 280-322 47-91 (106)
129 PF10226 DUF2216: Uncharacteri 88.7 4 8.6E-05 38.2 9.6 18 250-267 19-36 (195)
130 PF04111 APG6: Autophagy prote 88.6 7.6 0.00017 38.5 12.3 12 278-289 81-92 (314)
131 KOG1318 Helix loop helix trans 88.5 5.8 0.00013 41.1 11.6 71 252-322 227-323 (411)
132 PF10473 CENP-F_leu_zip: Leuci 88.5 7.6 0.00017 34.6 11.0 47 286-334 56-102 (140)
133 PF05103 DivIVA: DivIVA protei 88.5 0.25 5.3E-06 41.6 1.6 48 275-322 25-72 (131)
134 PF05700 BCAS2: Breast carcino 88.4 6.1 0.00013 37.1 11.0 55 269-324 163-217 (221)
135 PRK04325 hypothetical protein; 88.4 2.5 5.5E-05 33.5 7.1 55 277-333 4-58 (74)
136 PF12325 TMF_TATA_bd: TATA ele 88.3 3.3 7.2E-05 35.9 8.4 13 310-322 96-108 (120)
137 PF04999 FtsL: Cell division p 88.2 1.4 3E-05 35.8 5.7 45 287-331 33-77 (97)
138 KOG0995 Centromere-associated 88.0 3.9 8.6E-05 43.8 10.3 49 274-322 279-327 (581)
139 PRK00295 hypothetical protein; 87.8 3.3 7.1E-05 32.4 7.3 51 280-332 3-53 (68)
140 PF14662 CCDC155: Coiled-coil 87.8 3.4 7.3E-05 38.7 8.6 41 279-319 99-139 (193)
141 PF07989 Microtub_assoc: Micro 87.7 2.3 5.1E-05 33.9 6.6 46 278-323 3-56 (75)
142 PF05377 FlaC_arch: Flagella a 87.6 2 4.4E-05 32.6 5.8 39 284-322 2-40 (55)
143 KOG0971 Microtubule-associated 87.5 6.2 0.00014 44.6 11.7 29 293-321 329-357 (1243)
144 KOG4571 Activating transcripti 87.5 7.5 0.00016 38.6 11.2 34 274-307 254-287 (294)
145 PF13815 Dzip-like_N: Iguana/D 87.5 2 4.3E-05 36.6 6.5 33 290-322 81-113 (118)
146 COG3883 Uncharacterized protei 87.5 2.4 5.3E-05 41.4 7.8 51 273-323 50-100 (265)
147 PRK10803 tol-pal system protei 87.4 1.6 3.5E-05 42.0 6.6 53 268-320 54-106 (263)
148 PF07716 bZIP_2: Basic region 87.3 7.7 0.00017 28.5 8.8 26 291-316 27-52 (54)
149 PF04849 HAP1_N: HAP1 N-termin 87.3 1.6 3.5E-05 43.5 6.6 34 290-323 214-247 (306)
150 PF13870 DUF4201: Domain of un 87.2 8.4 0.00018 34.6 10.7 83 251-333 63-149 (177)
151 PF08232 Striatin: Striatin fa 87.1 4.3 9.4E-05 35.5 8.5 55 275-329 25-79 (134)
152 KOG1962 B-cell receptor-associ 87.0 4.7 0.0001 38.4 9.3 44 280-323 149-192 (216)
153 PF06216 RTBV_P46: Rice tungro 87.0 3 6.6E-05 40.9 8.1 45 279-323 68-112 (389)
154 COG4467 Regulator of replicati 87.0 2.9 6.2E-05 36.0 7.0 50 279-330 5-54 (114)
155 PF08614 ATG16: Autophagy prot 86.9 8.5 0.00019 35.2 10.8 10 310-319 158-167 (194)
156 PRK14154 heat shock protein Gr 86.9 1.5 3.3E-05 41.4 5.9 8 285-292 76-83 (208)
157 PF05278 PEARLI-4: Arabidopsis 86.7 11 0.00025 36.9 11.9 49 274-322 206-254 (269)
158 PF08826 DMPK_coil: DMPK coile 86.7 4.9 0.00011 31.1 7.6 43 281-323 17-59 (61)
159 PF08826 DMPK_coil: DMPK coile 86.6 7.1 0.00015 30.2 8.4 36 275-310 25-60 (61)
160 PF10211 Ax_dynein_light: Axon 86.6 6 0.00013 36.5 9.6 48 274-321 126-188 (189)
161 PF04977 DivIC: Septum formati 86.6 3 6.4E-05 31.9 6.5 30 293-322 21-50 (80)
162 PF04156 IncA: IncA protein; 86.5 13 0.00028 33.3 11.6 47 277-323 125-171 (191)
163 PF05529 Bap31: B-cell recepto 86.5 5 0.00011 36.4 8.9 38 287-324 152-189 (192)
164 KOG2391 Vacuolar sorting prote 86.2 3.4 7.5E-05 41.8 8.3 47 275-321 232-278 (365)
165 PTZ00454 26S protease regulato 86.2 2.8 6.1E-05 42.8 7.9 47 291-337 31-78 (398)
166 KOG2391 Vacuolar sorting prote 86.2 7.2 0.00016 39.6 10.5 65 248-314 214-278 (365)
167 PRK14162 heat shock protein Gr 86.1 2 4.3E-05 40.1 6.2 29 281-309 45-73 (194)
168 PRK03992 proteasome-activating 86.1 2.4 5.2E-05 42.8 7.3 61 277-337 3-64 (389)
169 PF09789 DUF2353: Uncharacteri 86.1 7 0.00015 39.2 10.4 47 278-324 68-114 (319)
170 PF12808 Mto2_bdg: Micro-tubul 86.0 2.5 5.3E-05 31.8 5.4 48 273-323 2-49 (52)
171 KOG1103 Predicted coiled-coil 85.9 3.1 6.8E-05 42.5 7.8 61 264-324 227-287 (561)
172 PF14662 CCDC155: Coiled-coil 85.9 3.3 7.2E-05 38.7 7.5 50 274-323 66-115 (193)
173 PRK14143 heat shock protein Gr 85.8 2.3 5.1E-05 40.8 6.7 20 278-297 84-103 (238)
174 KOG0977 Nuclear envelope prote 85.7 6.4 0.00014 42.2 10.4 59 261-319 134-192 (546)
175 PF15035 Rootletin: Ciliary ro 85.7 3.6 7.8E-05 37.9 7.6 40 282-321 74-113 (182)
176 PF09744 Jnk-SapK_ap_N: JNK_SA 85.6 9.4 0.0002 34.6 10.1 24 286-309 86-109 (158)
177 PF09744 Jnk-SapK_ap_N: JNK_SA 85.5 6.8 0.00015 35.4 9.2 46 278-323 92-137 (158)
178 TIGR03752 conj_TIGR03752 integ 85.5 2.9 6.4E-05 43.9 7.7 24 300-323 113-136 (472)
179 PF13851 GAS: Growth-arrest sp 85.4 15 0.00034 34.1 11.8 49 275-323 69-120 (201)
180 PHA02562 46 endonuclease subun 85.4 8.4 0.00018 39.9 11.1 32 280-311 363-394 (562)
181 PRK00736 hypothetical protein; 85.3 4.1 9E-05 31.8 6.7 53 279-333 2-54 (68)
182 PF09755 DUF2046: Uncharacteri 85.2 2.8 6.2E-05 41.8 7.1 21 276-296 42-62 (310)
183 PF04728 LPP: Lipoprotein leuc 85.2 5 0.00011 30.6 6.9 40 282-321 3-42 (56)
184 PF04871 Uso1_p115_C: Uso1 / p 85.1 15 0.00033 32.2 11.0 48 276-323 63-111 (136)
185 PRK14158 heat shock protein Gr 85.0 2.7 5.8E-05 39.3 6.5 26 275-300 54-79 (194)
186 PF12808 Mto2_bdg: Micro-tubul 84.9 3.4 7.3E-05 31.1 5.7 32 272-303 19-50 (52)
187 PF15556 Zwint: ZW10 interacto 84.9 15 0.00033 35.1 11.3 60 259-318 118-177 (252)
188 PF13118 DUF3972: Protein of u 84.7 4.7 0.0001 35.4 7.4 47 276-322 79-125 (126)
189 PF10205 KLRAQ: Predicted coil 84.6 9.7 0.00021 32.4 9.0 31 276-306 41-71 (102)
190 PRK13729 conjugal transfer pil 84.6 3.3 7.1E-05 43.6 7.6 50 274-323 82-131 (475)
191 PRK14139 heat shock protein Gr 84.6 2.8 6.1E-05 38.9 6.4 15 280-294 51-65 (185)
192 PF11180 DUF2968: Protein of u 84.5 15 0.00032 34.6 11.0 85 250-337 102-186 (192)
193 COG1792 MreC Cell shape-determ 84.5 2.8 6.2E-05 41.0 6.8 49 273-325 64-112 (284)
194 smart00340 HALZ homeobox assoc 84.5 1.9 4.1E-05 31.2 4.0 27 298-324 7-33 (44)
195 PRK14155 heat shock protein Gr 84.3 2 4.3E-05 40.5 5.4 21 278-298 30-50 (208)
196 TIGR03545 conserved hypothetic 84.1 6.9 0.00015 41.9 9.9 68 252-319 168-242 (555)
197 PF01166 TSC22: TSC-22/dip/bun 84.1 1.2 2.5E-05 34.3 3.0 27 276-302 15-41 (59)
198 PRK03918 chromosome segregatio 84.0 12 0.00025 41.2 11.9 9 279-287 204-212 (880)
199 KOG2010 Double stranded RNA bi 83.9 4.4 9.6E-05 40.9 7.8 48 274-321 153-200 (405)
200 TIGR02231 conserved hypothetic 83.8 13 0.00029 38.8 11.7 48 278-325 127-174 (525)
201 KOG0946 ER-Golgi vesicle-tethe 83.8 10 0.00022 42.5 11.0 63 261-323 657-719 (970)
202 PF07558 Shugoshin_N: Shugoshi 83.7 1.2 2.6E-05 32.3 2.9 34 286-319 11-44 (46)
203 PRK14140 heat shock protein Gr 83.4 2.7 5.8E-05 39.2 5.8 36 277-312 39-74 (191)
204 PRK14148 heat shock protein Gr 83.4 3.5 7.5E-05 38.6 6.5 56 278-333 43-98 (195)
205 COG1382 GimC Prefoldin, chaper 83.4 5.4 0.00012 34.7 7.2 40 272-311 67-106 (119)
206 cd07596 BAR_SNX The Bin/Amphip 83.3 16 0.00034 32.5 10.6 63 257-322 113-182 (218)
207 PF15058 Speriolin_N: Sperioli 83.3 2.7 5.9E-05 39.4 5.7 38 277-322 7-44 (200)
208 PF12718 Tropomyosin_1: Tropom 83.3 6 0.00013 35.0 7.7 34 271-304 31-64 (143)
209 PF09304 Cortex-I_coil: Cortex 83.0 26 0.00057 30.1 11.0 50 269-318 24-73 (107)
210 PF12709 Kinetocho_Slk19: Cent 83.0 4.2 9.1E-05 33.6 6.1 27 295-321 48-74 (87)
211 KOG0804 Cytoplasmic Zn-finger 83.0 7.7 0.00017 40.7 9.3 78 258-337 368-453 (493)
212 smart00787 Spc7 Spc7 kinetocho 83.0 13 0.00028 37.0 10.8 30 276-305 205-234 (312)
213 PF05278 PEARLI-4: Arabidopsis 82.9 23 0.00049 34.9 12.1 55 277-333 202-256 (269)
214 PF14282 FlxA: FlxA-like prote 82.7 5.5 0.00012 33.5 6.9 46 278-323 29-78 (106)
215 PRK14160 heat shock protein Gr 82.6 4.4 9.5E-05 38.4 6.9 61 277-337 63-123 (211)
216 KOG0980 Actin-binding protein 82.5 11 0.00024 42.4 10.9 78 254-333 445-522 (980)
217 KOG4797 Transcriptional regula 82.4 3 6.6E-05 35.9 5.2 24 293-316 71-94 (123)
218 PF13815 Dzip-like_N: Iguana/D 82.4 5 0.00011 34.1 6.6 40 280-319 78-117 (118)
219 PF10805 DUF2730: Protein of u 82.3 16 0.00035 30.6 9.6 48 274-321 48-97 (106)
220 TIGR02977 phageshock_pspA phag 82.2 10 0.00023 35.3 9.3 51 274-324 98-148 (219)
221 PRK09039 hypothetical protein; 81.9 17 0.00038 36.4 11.3 24 284-307 139-162 (343)
222 KOG4001 Axonemal dynein light 81.8 17 0.00038 34.7 10.4 27 299-325 231-257 (259)
223 PF15397 DUF4618: Domain of un 81.8 20 0.00044 35.0 11.3 72 251-324 141-221 (258)
224 PRK14127 cell division protein 81.8 3.6 7.8E-05 35.2 5.5 41 275-315 30-70 (109)
225 PF02403 Seryl_tRNA_N: Seryl-t 81.7 17 0.00036 29.9 9.4 28 294-321 72-99 (108)
226 PF05667 DUF812: Protein of un 81.7 6.3 0.00014 42.6 8.6 44 277-320 337-380 (594)
227 PF10146 zf-C4H2: Zinc finger- 81.7 22 0.00047 34.1 11.3 43 281-323 59-101 (230)
228 PF03980 Nnf1: Nnf1 ; InterPr 81.7 2.3 5E-05 35.3 4.3 31 273-303 78-108 (109)
229 KOG0982 Centrosomal protein Nu 81.6 13 0.00028 38.9 10.3 55 270-326 280-334 (502)
230 PF04859 DUF641: Plant protein 81.2 4.8 0.00011 35.5 6.2 43 276-318 88-130 (131)
231 PF11500 Cut12: Spindle pole b 81.0 15 0.00033 33.2 9.5 56 251-306 81-136 (152)
232 PF08961 DUF1875: Domain of un 81.0 0.49 1.1E-05 45.1 0.0 44 272-315 119-162 (243)
233 PRK14161 heat shock protein Gr 80.7 4.5 9.9E-05 37.2 6.2 26 284-309 28-53 (178)
234 PF01486 K-box: K-box region; 80.6 28 0.0006 28.5 10.3 46 275-320 49-99 (100)
235 PTZ00454 26S protease regulato 80.5 6.8 0.00015 40.0 8.0 38 280-317 27-64 (398)
236 PRK14153 heat shock protein Gr 80.2 3.7 8E-05 38.4 5.5 24 276-299 48-71 (194)
237 PF04880 NUDE_C: NUDE protein, 80.2 1.4 3.1E-05 40.2 2.7 30 290-320 25-54 (166)
238 PF11365 DUF3166: Protein of u 79.9 6.3 0.00014 33.1 6.2 46 277-322 3-48 (96)
239 PF10224 DUF2205: Predicted co 79.9 9 0.00019 31.1 6.9 36 276-311 31-66 (80)
240 PF05812 Herpes_BLRF2: Herpesv 79.9 3.1 6.7E-05 36.2 4.5 30 273-302 1-30 (118)
241 PF13863 DUF4200: Domain of un 79.8 19 0.00042 30.1 9.3 27 295-321 80-106 (126)
242 PRK14145 heat shock protein Gr 79.6 6 0.00013 37.1 6.7 25 285-309 55-79 (196)
243 PF07889 DUF1664: Protein of u 79.5 19 0.0004 31.6 9.3 50 274-323 67-116 (126)
244 KOG0933 Structural maintenance 79.5 17 0.00038 41.6 11.1 52 272-323 812-863 (1174)
245 PF10226 DUF2216: Uncharacteri 79.4 9.6 0.00021 35.7 7.8 29 295-323 114-142 (195)
246 PF07558 Shugoshin_N: Shugoshi 79.2 1.9 4.1E-05 31.3 2.6 43 255-298 2-44 (46)
247 COG4717 Uncharacterized conser 79.1 12 0.00026 42.1 9.7 73 263-335 729-820 (984)
248 PF00038 Filament: Intermediat 79.0 27 0.00058 33.6 11.2 39 284-322 211-249 (312)
249 TIGR00606 rad50 rad50. This fa 78.9 17 0.00036 42.5 11.3 18 265-282 847-864 (1311)
250 smart00340 HALZ homeobox assoc 78.8 4.8 0.0001 29.2 4.4 25 277-301 7-31 (44)
251 TIGR02209 ftsL_broad cell divi 78.7 7.2 0.00016 30.5 6.0 31 272-302 28-58 (85)
252 PF03670 UPF0184: Uncharacteri 78.7 14 0.00031 30.3 7.7 47 277-323 28-74 (83)
253 PF15030 DUF4527: Protein of u 78.6 22 0.00048 34.7 10.2 28 250-277 11-38 (277)
254 PF11544 Spc42p: Spindle pole 78.5 17 0.00036 29.4 7.9 32 285-316 22-53 (76)
255 PF06210 DUF1003: Protein of u 78.5 11 0.00024 32.1 7.4 52 259-315 55-106 (108)
256 PRK14157 heat shock protein Gr 78.4 5.5 0.00012 38.2 6.1 11 272-282 102-112 (227)
257 KOG0249 LAR-interacting protei 78.2 18 0.00039 40.2 10.5 41 283-323 217-257 (916)
258 PHA03162 hypothetical protein; 78.1 1.6 3.5E-05 38.6 2.2 28 272-299 10-37 (135)
259 PF10669 Phage_Gp23: Protein g 78.1 28 0.0006 29.7 9.5 23 246-268 47-69 (121)
260 PF11180 DUF2968: Protein of u 77.9 22 0.00048 33.4 9.7 37 276-312 148-184 (192)
261 PF14645 Chibby: Chibby family 77.8 8.8 0.00019 33.0 6.7 41 279-319 75-115 (116)
262 PRK02224 chromosome segregatio 77.8 25 0.00055 38.8 11.9 12 276-287 510-521 (880)
263 PRK04863 mukB cell division pr 77.7 22 0.00048 42.4 11.9 17 256-272 323-339 (1486)
264 TIGR02680 conserved hypothetic 77.7 24 0.00051 41.6 12.1 56 275-330 276-331 (1353)
265 PRK10698 phage shock protein P 77.5 30 0.00065 32.6 10.8 55 275-329 99-153 (222)
266 PF10779 XhlA: Haemolysin XhlA 77.4 12 0.00026 29.1 6.7 39 278-316 16-54 (71)
267 PF15070 GOLGA2L5: Putative go 77.2 16 0.00035 39.7 9.9 52 272-323 119-173 (617)
268 PF04568 IATP: Mitochondrial A 77.1 14 0.00031 31.2 7.6 42 263-304 57-98 (100)
269 PF04201 TPD52: Tumour protein 77.1 12 0.00027 34.1 7.7 18 315-332 107-124 (162)
270 KOG0971 Microtubule-associated 77.0 19 0.00041 41.0 10.4 48 277-324 327-389 (1243)
271 KOG0249 LAR-interacting protei 76.9 20 0.00043 39.8 10.4 59 270-330 211-269 (916)
272 PF08606 Prp19: Prp19/Pso4-lik 76.9 16 0.00034 29.2 7.3 46 277-322 10-69 (70)
273 PF05557 MAD: Mitotic checkpoi 76.9 11 0.00023 41.2 8.6 23 303-325 566-588 (722)
274 PF15035 Rootletin: Ciliary ro 76.8 13 0.00028 34.3 7.9 29 280-308 86-114 (182)
275 cd07596 BAR_SNX The Bin/Amphip 76.8 43 0.00092 29.7 11.2 57 266-322 108-171 (218)
276 PRK11546 zraP zinc resistance 76.6 9.6 0.00021 34.2 6.7 24 271-294 57-80 (143)
277 PF14988 DUF4515: Domain of un 76.5 44 0.00096 31.3 11.5 47 277-323 151-197 (206)
278 PHA03155 hypothetical protein; 76.5 3.3 7.1E-05 35.8 3.7 25 276-300 9-33 (115)
279 KOG0483 Transcription factor H 76.5 4.4 9.6E-05 38.0 4.8 37 287-323 110-146 (198)
280 KOG2077 JNK/SAPK-associated pr 76.4 5.7 0.00012 42.9 6.1 46 278-323 325-370 (832)
281 PF05911 DUF869: Plant protein 76.4 12 0.00026 41.7 8.9 67 269-335 128-223 (769)
282 PRK14160 heat shock protein Gr 76.4 11 0.00025 35.6 7.6 41 278-318 57-97 (211)
283 TIGR03185 DNA_S_dndD DNA sulfu 76.2 28 0.0006 37.6 11.4 46 276-321 422-467 (650)
284 TIGR02231 conserved hypothetic 76.2 27 0.00059 36.5 11.1 47 284-332 126-172 (525)
285 PF13935 Ead_Ea22: Ead/Ea22-li 76.2 29 0.00063 30.3 9.6 48 275-322 90-138 (139)
286 PF10481 CENP-F_N: Cenp-F N-te 76.1 22 0.00047 35.3 9.5 75 246-320 3-91 (307)
287 PRK14144 heat shock protein Gr 76.1 7.9 0.00017 36.4 6.4 14 279-292 63-76 (199)
288 KOG0288 WD40 repeat protein Ti 76.0 17 0.00036 37.9 9.1 48 259-306 27-79 (459)
289 PRK12705 hypothetical protein; 75.9 39 0.00085 36.0 12.2 44 280-323 93-136 (508)
290 PF08537 NBP1: Fungal Nap bind 75.8 26 0.00056 35.3 10.2 23 254-276 122-144 (323)
291 KOG4797 Transcriptional regula 75.8 5.8 0.00013 34.3 4.9 28 275-302 67-94 (123)
292 PF09738 DUF2051: Double stran 75.7 11 0.00024 37.4 7.7 51 275-325 112-162 (302)
293 PF03962 Mnd1: Mnd1 family; I 75.7 34 0.00073 31.6 10.3 23 270-292 105-127 (188)
294 PF11365 DUF3166: Protein of u 75.7 10 0.00022 31.8 6.3 39 285-323 4-42 (96)
295 KOG3248 Transcription factor T 75.7 9.8 0.00021 38.7 7.2 53 26-81 72-128 (421)
296 PF10146 zf-C4H2: Zinc finger- 75.6 54 0.0012 31.4 12.0 44 275-318 60-103 (230)
297 PF00038 Filament: Intermediat 75.5 46 0.00099 32.0 11.7 38 265-302 213-250 (312)
298 PF04871 Uso1_p115_C: Uso1 / p 75.5 50 0.0011 29.0 10.9 64 270-335 50-114 (136)
299 PRK15396 murein lipoprotein; P 75.3 20 0.00044 29.0 7.7 46 276-321 26-71 (78)
300 PRK03992 proteasome-activating 75.2 9.1 0.0002 38.7 7.1 41 277-317 10-50 (389)
301 COG2900 SlyX Uncharacterized p 75.1 19 0.00041 28.9 7.3 56 278-335 4-59 (72)
302 PF05911 DUF869: Plant protein 74.9 22 0.00049 39.6 10.4 63 274-336 91-174 (769)
303 KOG3819 Uncharacterized conser 74.9 30 0.00065 36.5 10.7 77 248-324 48-174 (513)
304 COG2433 Uncharacterized conser 74.8 28 0.00061 37.9 10.8 27 276-302 437-463 (652)
305 COG2919 Septum formation initi 74.4 13 0.00027 31.8 6.7 32 294-325 55-86 (117)
306 PF04012 PspA_IM30: PspA/IM30 74.1 22 0.00048 32.7 8.8 47 277-323 100-146 (221)
307 COG4942 Membrane-bound metallo 74.0 24 0.00052 36.8 9.8 43 273-315 64-106 (420)
308 PF13805 Pil1: Eisosome compon 73.8 20 0.00044 35.3 8.8 19 257-275 130-149 (271)
309 PF06810 Phage_GP20: Phage min 73.6 12 0.00026 33.5 6.7 37 270-306 29-68 (155)
310 PF13514 AAA_27: AAA domain 73.6 36 0.00077 39.1 12.0 50 285-334 892-941 (1111)
311 KOG2264 Exostosin EXT1L [Signa 73.4 32 0.0007 37.5 10.7 42 276-317 108-149 (907)
312 COG1196 Smc Chromosome segrega 73.3 30 0.00066 39.9 11.4 40 278-317 442-481 (1163)
313 PF06098 Radial_spoke_3: Radia 73.3 35 0.00075 33.9 10.4 25 247-271 149-173 (291)
314 COG1842 PspA Phage shock prote 73.2 74 0.0016 30.4 12.2 44 279-322 96-139 (225)
315 TIGR01554 major_cap_HK97 phage 73.2 19 0.00041 35.9 8.7 26 276-301 35-60 (378)
316 PF15136 UPF0449: Uncharacteri 73.2 18 0.00039 30.5 7.1 40 282-321 57-96 (97)
317 TIGR00414 serS seryl-tRNA synt 73.1 29 0.00062 35.7 10.2 29 293-321 73-101 (418)
318 PF15290 Syntaphilin: Golgi-lo 73.1 16 0.00034 36.3 7.8 26 263-289 78-103 (305)
319 PF14282 FlxA: FlxA-like prote 73.1 16 0.00036 30.6 7.0 24 272-295 48-71 (106)
320 PF14817 HAUS5: HAUS augmin-li 73.1 16 0.00036 39.8 8.7 32 278-309 82-113 (632)
321 PF07200 Mod_r: Modifier of ru 73.0 33 0.00072 29.7 9.2 47 260-307 41-87 (150)
322 COG1730 GIM5 Predicted prefold 73.0 17 0.00038 32.5 7.5 23 294-316 113-135 (145)
323 KOG0999 Microtubule-associated 72.8 31 0.00068 37.4 10.4 39 284-322 172-213 (772)
324 PF07200 Mod_r: Modifier of ru 72.6 19 0.00041 31.2 7.6 32 290-321 56-87 (150)
325 PF10482 CtIP_N: Tumour-suppre 72.6 21 0.00046 31.1 7.5 26 277-302 37-62 (120)
326 TIGR03495 phage_LysB phage lys 72.6 53 0.0011 29.2 10.3 44 289-333 68-111 (135)
327 PF13935 Ead_Ea22: Ead/Ea22-li 72.4 25 0.00054 30.8 8.3 6 247-252 72-77 (139)
328 PRK05431 seryl-tRNA synthetase 72.4 32 0.0007 35.4 10.4 26 294-319 71-96 (425)
329 PF12999 PRKCSH-like: Glucosid 72.4 32 0.00069 31.9 9.2 31 272-302 143-173 (176)
330 PRK13922 rod shape-determining 72.1 15 0.00033 35.0 7.5 35 276-310 70-107 (276)
331 KOG4643 Uncharacterized coiled 72.1 12 0.00025 42.9 7.4 29 275-303 530-558 (1195)
332 PF04899 MbeD_MobD: MbeD/MobD 72.0 19 0.00041 28.6 6.6 23 280-302 33-55 (70)
333 PF01920 Prefoldin_2: Prefoldi 72.0 12 0.00026 30.0 5.9 39 285-323 65-103 (106)
334 PF06810 Phage_GP20: Phage min 72.0 32 0.00069 30.8 9.0 16 277-292 53-68 (155)
335 PF13805 Pil1: Eisosome compon 72.0 31 0.00067 34.0 9.6 69 254-322 144-214 (271)
336 COG1196 Smc Chromosome segrega 71.9 31 0.00066 39.9 11.0 14 27-40 527-540 (1163)
337 PF04012 PspA_IM30: PspA/IM30 71.8 52 0.0011 30.3 10.7 56 279-334 95-150 (221)
338 PF09789 DUF2353: Uncharacteri 71.8 29 0.00064 34.9 9.5 36 290-325 66-101 (319)
339 KOG0250 DNA repair protein RAD 71.5 39 0.00085 39.0 11.4 50 274-323 371-421 (1074)
340 PF11544 Spc42p: Spindle pole 71.4 36 0.00079 27.6 8.2 46 278-323 8-53 (76)
341 KOG2891 Surface glycoprotein [ 71.3 41 0.00089 33.8 10.2 20 267-286 354-373 (445)
342 PF05837 CENP-H: Centromere pr 71.3 14 0.0003 31.0 6.2 24 279-302 21-44 (106)
343 PF07407 Seadorna_VP6: Seadorn 71.2 13 0.00029 37.7 6.9 22 287-308 37-58 (420)
344 PF12999 PRKCSH-like: Glucosid 71.1 26 0.00057 32.4 8.4 9 202-210 90-98 (176)
345 PF06698 DUF1192: Protein of u 71.1 14 0.00031 28.4 5.6 25 277-301 23-47 (59)
346 PF08232 Striatin: Striatin fa 71.0 27 0.00059 30.5 8.2 62 256-317 13-74 (134)
347 PF14775 NYD-SP28_assoc: Sperm 71.0 34 0.00073 26.2 7.7 36 285-321 23-58 (60)
348 KOG0161 Myosin class II heavy 70.8 35 0.00075 41.9 11.3 67 259-325 1644-1710(1930)
349 PF10168 Nup88: Nuclear pore c 70.8 44 0.00094 37.1 11.4 37 275-311 579-615 (717)
350 KOG0243 Kinesin-like protein [ 70.7 41 0.00089 38.8 11.3 27 273-299 446-472 (1041)
351 PF07058 Myosin_HC-like: Myosi 70.7 6.6 0.00014 39.4 4.7 49 284-334 2-50 (351)
352 PF08912 Rho_Binding: Rho Bind 70.7 20 0.00042 28.6 6.4 33 280-312 1-33 (69)
353 KOG3335 Predicted coiled-coil 70.7 18 0.0004 33.6 7.2 28 292-319 109-136 (181)
354 PF05008 V-SNARE: Vesicle tran 70.6 31 0.00068 26.6 7.7 47 274-320 31-78 (79)
355 PRK03947 prefoldin subunit alp 70.5 21 0.00045 30.8 7.3 29 279-307 105-133 (140)
356 PF04849 HAP1_N: HAP1 N-termin 70.5 35 0.00075 34.2 9.7 46 276-321 242-287 (306)
357 KOG1853 LIS1-interacting prote 70.4 42 0.00092 33.2 10.0 47 276-322 134-183 (333)
358 KOG0709 CREB/ATF family transc 70.3 13 0.00027 39.2 6.8 42 283-324 273-314 (472)
359 PF05600 DUF773: Protein of un 70.3 19 0.00042 38.1 8.4 49 273-321 444-492 (507)
360 PLN02320 seryl-tRNA synthetase 70.3 16 0.00034 38.9 7.7 22 297-318 138-159 (502)
361 PHA03162 hypothetical protein; 70.3 6.5 0.00014 34.9 4.0 29 298-326 15-43 (135)
362 KOG2483 Upstream transcription 70.0 31 0.00067 33.2 8.9 37 290-326 106-142 (232)
363 PF01486 K-box: K-box region; 70.0 23 0.00051 28.9 7.2 34 265-298 61-98 (100)
364 COG3879 Uncharacterized protei 70.0 19 0.00042 34.9 7.6 25 278-302 60-84 (247)
365 PF10168 Nup88: Nuclear pore c 69.9 52 0.0011 36.4 11.8 44 278-321 561-604 (717)
366 KOG0239 Kinesin (KAR3 subfamil 69.9 50 0.0011 36.4 11.5 18 310-327 300-317 (670)
367 PF05667 DUF812: Protein of un 69.9 17 0.00036 39.4 7.9 48 275-322 328-375 (594)
368 PF04340 DUF484: Protein of un 69.7 16 0.00035 33.9 6.9 25 277-301 42-66 (225)
369 KOG0239 Kinesin (KAR3 subfamil 69.6 29 0.00062 38.2 9.7 46 277-322 243-288 (670)
370 KOG3650 Predicted coiled-coil 69.5 19 0.00042 30.7 6.6 43 271-313 66-108 (120)
371 PF10779 XhlA: Haemolysin XhlA 69.5 38 0.00083 26.3 7.9 43 280-322 4-46 (71)
372 PF09730 BicD: Microtubule-ass 69.5 41 0.00089 37.4 10.8 14 287-300 102-115 (717)
373 TIGR01730 RND_mfp RND family e 69.4 27 0.00058 33.0 8.4 32 290-321 103-134 (322)
374 PF10883 DUF2681: Protein of u 69.4 20 0.00043 29.7 6.5 18 284-301 32-49 (87)
375 PF13094 CENP-Q: CENP-Q, a CEN 69.3 21 0.00045 31.6 7.2 50 275-324 41-90 (160)
376 PF15556 Zwint: ZW10 interacto 69.3 67 0.0015 30.8 10.7 63 260-322 112-174 (252)
377 PF07334 IFP_35_N: Interferon- 69.2 9.6 0.00021 30.8 4.5 26 285-310 3-28 (76)
378 PF07246 Phlebovirus_NSM: Phle 69.2 29 0.00062 34.1 8.6 13 146-158 94-106 (264)
379 PRK10361 DNA recombination pro 69.0 60 0.0013 34.4 11.5 23 279-301 64-86 (475)
380 COG4238 Murein lipoprotein [Ce 69.0 35 0.00075 27.7 7.5 48 275-322 25-72 (78)
381 PF09766 FimP: Fms-interacting 69.0 23 0.0005 35.7 8.2 53 269-321 102-154 (355)
382 KOG0804 Cytoplasmic Zn-finger 69.0 52 0.0011 34.8 10.8 26 290-315 383-408 (493)
383 PF14916 CCDC92: Coiled-coil d 69.0 13 0.00027 28.8 4.9 39 276-317 4-42 (60)
384 PF10506 MCC-bdg_PDZ: PDZ doma 68.8 19 0.00042 28.3 6.0 38 279-316 2-39 (67)
385 PRK13923 putative spore coat p 68.7 18 0.00038 33.4 6.7 62 273-336 57-149 (170)
386 PHA03161 hypothetical protein; 68.7 32 0.0007 31.1 8.2 25 278-302 57-81 (150)
387 COG4372 Uncharacterized protei 68.6 74 0.0016 33.2 11.7 40 284-323 139-178 (499)
388 TIGR03689 pup_AAA proteasome A 68.6 12 0.00026 39.7 6.4 48 278-332 4-52 (512)
389 KOG0933 Structural maintenance 68.6 47 0.001 38.3 11.0 19 303-321 822-840 (1174)
390 PF07047 OPA3: Optic atrophy 3 68.4 11 0.00023 33.0 5.0 20 275-294 112-131 (134)
391 PF05622 HOOK: HOOK protein; 68.3 1.7 3.6E-05 47.4 0.0 59 247-305 296-355 (713)
392 COG4372 Uncharacterized protei 68.3 79 0.0017 33.1 11.8 42 274-315 136-177 (499)
393 TIGR03185 DNA_S_dndD DNA sulfu 68.3 64 0.0014 34.8 11.9 32 278-309 212-243 (650)
394 PF07047 OPA3: Optic atrophy 3 68.2 12 0.00025 32.8 5.2 25 278-302 108-132 (134)
395 TIGR03689 pup_AAA proteasome A 68.1 11 0.00023 40.1 6.0 35 275-309 8-42 (512)
396 PF14915 CCDC144C: CCDC144C pr 68.1 56 0.0012 32.7 10.4 72 245-321 2-102 (305)
397 PRK05431 seryl-tRNA synthetase 68.0 27 0.00059 36.0 8.7 37 286-322 70-106 (425)
398 PF15254 CCDC14: Coiled-coil d 68.0 38 0.00083 37.9 10.1 27 292-318 451-477 (861)
399 TIGR01242 26Sp45 26S proteasom 67.9 12 0.00026 37.1 6.0 49 289-337 6-55 (364)
400 TIGR01242 26Sp45 26S proteasom 67.7 12 0.00026 37.1 5.9 38 279-316 3-40 (364)
401 cd00632 Prefoldin_beta Prefold 67.7 28 0.00061 28.7 7.2 37 286-322 67-103 (105)
402 PF09730 BicD: Microtubule-ass 67.6 20 0.00043 39.7 8.0 48 277-324 71-118 (717)
403 KOG4010 Coiled-coil protein TP 67.5 16 0.00035 34.3 6.2 32 279-310 48-79 (208)
404 PF10205 KLRAQ: Predicted coil 67.4 36 0.00077 29.0 7.8 27 297-323 41-67 (102)
405 PF03245 Phage_lysis: Bacterio 67.4 55 0.0012 28.3 9.2 49 273-321 12-60 (125)
406 PF10234 Cluap1: Clusterin-ass 67.4 60 0.0013 31.9 10.4 32 291-322 185-216 (267)
407 PF09727 CortBP2: Cortactin-bi 67.4 78 0.0017 29.7 10.8 65 255-321 95-173 (192)
408 PF06216 RTBV_P46: Rice tungro 67.4 15 0.00032 36.3 6.2 48 260-310 66-113 (389)
409 KOG2236 Uncharacterized conser 67.3 8.6 0.00019 40.4 4.9 30 47-84 424-453 (483)
410 COG4420 Predicted membrane pro 67.3 29 0.00063 32.6 7.9 37 290-326 135-171 (191)
411 PRK10963 hypothetical protein; 67.2 16 0.00035 34.2 6.4 27 278-304 54-83 (223)
412 PRK13182 racA polar chromosome 67.1 51 0.0011 30.3 9.4 61 275-337 85-150 (175)
413 PF10359 Fmp27_WPPW: RNA pol I 67.1 26 0.00056 36.6 8.5 30 294-323 198-227 (475)
414 PF12329 TMF_DNA_bd: TATA elem 67.1 41 0.00089 26.6 7.7 40 281-320 32-71 (74)
415 KOG1318 Helix loop helix trans 67.0 14 0.00031 38.3 6.4 49 273-321 288-349 (411)
416 KOG0996 Structural maintenance 66.9 49 0.0011 38.7 10.9 53 270-322 537-589 (1293)
417 KOG4360 Uncharacterized coiled 66.9 20 0.00043 38.4 7.4 48 276-323 220-267 (596)
418 PRK04863 mukB cell division pr 66.9 46 0.001 39.9 11.2 37 280-316 360-396 (1486)
419 PHA03011 hypothetical protein; 66.9 32 0.0007 29.5 7.4 46 276-321 65-117 (120)
420 PF14916 CCDC92: Coiled-coil d 66.8 11 0.00024 29.1 4.3 47 280-329 1-47 (60)
421 KOG0288 WD40 repeat protein Ti 66.8 71 0.0015 33.5 11.2 43 279-321 31-73 (459)
422 PRK09343 prefoldin subunit bet 66.8 31 0.00066 29.6 7.5 40 292-333 74-113 (121)
423 PRK10929 putative mechanosensi 66.8 47 0.001 38.7 11.0 46 288-335 264-309 (1109)
424 PLN02678 seryl-tRNA synthetase 66.6 45 0.00098 34.9 10.0 29 293-321 75-103 (448)
425 PF11382 DUF3186: Protein of u 66.3 18 0.00038 35.8 6.7 40 276-315 33-72 (308)
426 PHA03155 hypothetical protein; 66.3 8.5 0.00018 33.3 3.9 29 298-326 10-38 (115)
427 PF02388 FemAB: FemAB family; 66.2 27 0.00059 35.6 8.2 44 275-318 242-295 (406)
428 PF15619 Lebercilin: Ciliary p 66.2 92 0.002 29.0 11.0 86 248-335 54-148 (194)
429 cd00632 Prefoldin_beta Prefold 66.1 27 0.00059 28.8 6.8 38 278-315 66-103 (105)
430 PTZ00361 26 proteosome regulat 66.1 16 0.00035 38.0 6.6 61 268-337 55-116 (438)
431 COG1340 Uncharacterized archae 66.1 93 0.002 31.1 11.5 71 252-322 24-95 (294)
432 PF08581 Tup_N: Tup N-terminal 65.9 49 0.0011 26.8 8.0 52 274-325 24-79 (79)
433 cd07666 BAR_SNX7 The Bin/Amphi 65.9 30 0.00065 33.4 8.0 53 268-323 156-208 (243)
434 PRK14156 heat shock protein Gr 65.8 13 0.00029 34.2 5.4 26 284-309 36-61 (177)
435 PLN02678 seryl-tRNA synthetase 65.8 32 0.00069 36.0 8.7 12 310-321 85-96 (448)
436 PF03961 DUF342: Protein of un 65.8 34 0.00073 35.3 8.9 33 290-322 376-408 (451)
437 COG2919 Septum formation initi 65.7 85 0.0018 26.7 11.3 45 277-321 52-96 (117)
438 PF05812 Herpes_BLRF2: Herpesv 65.7 9.6 0.00021 33.2 4.1 27 298-324 5-31 (118)
439 KOG4643 Uncharacterized coiled 65.7 47 0.001 38.3 10.3 68 255-322 374-441 (1195)
440 KOG0946 ER-Golgi vesicle-tethe 65.7 17 0.00037 40.8 7.0 48 275-322 650-697 (970)
441 PRK10698 phage shock protein P 65.7 1.1E+02 0.0024 28.9 11.6 42 282-323 99-140 (222)
442 PRK10361 DNA recombination pro 65.6 91 0.002 33.1 12.0 21 277-297 69-89 (475)
443 PF12777 MT: Microtubule-bindi 65.6 34 0.00074 34.1 8.6 43 265-307 232-274 (344)
444 PRK14148 heat shock protein Gr 65.5 19 0.00041 33.8 6.3 33 273-305 52-84 (195)
445 PRK14161 heat shock protein Gr 65.5 28 0.00061 32.0 7.4 24 275-298 33-56 (178)
446 PRK10636 putative ABC transpor 65.4 31 0.00066 37.2 8.8 24 275-298 563-586 (638)
447 PF04999 FtsL: Cell division p 65.3 22 0.00047 28.8 6.0 32 285-316 38-69 (97)
448 PF03670 UPF0184: Uncharacteri 65.3 26 0.00056 28.8 6.3 42 275-316 33-74 (83)
449 PF00261 Tropomyosin: Tropomyo 65.2 1.2E+02 0.0025 28.7 11.7 43 278-320 172-214 (237)
450 PF03980 Nnf1: Nnf1 ; InterPr 64.9 43 0.00093 27.7 7.9 32 292-323 76-107 (109)
451 PF06103 DUF948: Bacterial pro 64.8 70 0.0015 25.4 9.3 46 277-322 35-80 (90)
452 KOG4674 Uncharacterized conser 64.7 57 0.0012 39.8 11.3 74 250-323 811-885 (1822)
453 PHA02109 hypothetical protein 64.7 19 0.00041 33.7 6.1 36 273-308 191-226 (233)
454 cd00890 Prefoldin Prefoldin is 64.6 25 0.00054 29.2 6.4 39 277-315 89-127 (129)
455 KOG4370 Ral-GTPase effector RL 64.3 24 0.00053 37.0 7.4 53 277-329 408-460 (514)
456 KOG2072 Translation initiation 64.2 58 0.0013 36.9 10.5 66 258-323 612-690 (988)
457 PF06818 Fez1: Fez1; InterPro 64.1 15 0.00034 34.6 5.5 53 271-323 76-151 (202)
458 PLN02320 seryl-tRNA synthetase 64.1 48 0.001 35.3 9.8 15 308-322 135-149 (502)
459 KOG4603 TBP-1 interacting prot 64.1 37 0.00081 31.7 7.8 61 274-336 85-147 (201)
460 KOG4687 Uncharacterized coiled 64.0 68 0.0015 32.2 10.0 51 274-324 50-118 (389)
461 PF03961 DUF342: Protein of un 63.8 44 0.00095 34.4 9.3 50 274-323 347-402 (451)
462 KOG4001 Axonemal dynein light 63.8 50 0.0011 31.7 8.8 55 263-317 169-227 (259)
463 PF06428 Sec2p: GDP/GTP exchan 63.8 30 0.00066 29.1 6.7 40 296-335 37-81 (100)
464 KOG0612 Rho-associated, coiled 63.7 56 0.0012 38.3 10.7 41 275-315 494-534 (1317)
465 COG0576 GrpE Molecular chapero 63.6 18 0.00038 33.6 5.8 64 274-337 35-98 (193)
466 COG4985 ABC-type phosphate tra 63.4 16 0.00034 35.7 5.5 91 250-340 181-273 (289)
467 PF12711 Kinesin-relat_1: Kine 63.4 45 0.00097 27.6 7.4 48 274-323 30-83 (86)
468 KOG0995 Centromere-associated 63.4 56 0.0012 35.4 10.0 74 250-323 248-321 (581)
469 PRK09413 IS2 repressor TnpA; R 63.3 17 0.00037 30.7 5.3 33 288-320 70-102 (121)
470 PRK14127 cell division protein 63.3 35 0.00076 29.2 7.1 49 277-325 25-73 (109)
471 COG1729 Uncharacterized protei 63.3 20 0.00043 35.1 6.3 49 277-326 58-106 (262)
472 PF14257 DUF4349: Domain of un 63.3 30 0.00065 32.8 7.5 57 275-331 132-197 (262)
473 KOG2129 Uncharacterized conser 63.0 10 0.00023 39.5 4.5 47 277-323 45-91 (552)
474 PRK14872 rod shape-determining 63.0 46 0.001 33.7 9.0 70 246-319 26-97 (337)
475 COG1340 Uncharacterized archae 63.0 1.3E+02 0.0028 30.1 11.9 77 245-322 5-81 (294)
476 PRK14150 heat shock protein Gr 62.8 22 0.00048 33.1 6.3 62 273-337 39-100 (193)
477 cd07429 Cby_like Chibby, a nuc 62.7 17 0.00036 31.2 5.0 37 275-311 72-108 (108)
478 PF10828 DUF2570: Protein of u 62.6 93 0.002 26.1 9.7 70 263-336 22-91 (110)
479 PRK09413 IS2 repressor TnpA; R 62.6 18 0.00039 30.6 5.2 36 277-312 73-108 (121)
480 KOG0161 Myosin class II heavy 62.6 70 0.0015 39.4 11.7 73 250-322 1431-1503(1930)
481 PRK15178 Vi polysaccharide exp 62.5 64 0.0014 33.8 10.1 83 249-331 248-349 (434)
482 PF07851 TMPIT: TMPIT-like pro 62.5 34 0.00074 34.6 7.9 59 274-334 3-61 (330)
483 PF04201 TPD52: Tumour protein 62.4 25 0.00055 32.2 6.4 39 281-319 28-66 (162)
484 PF07989 Microtub_assoc: Micro 62.2 35 0.00077 27.2 6.5 50 274-323 20-70 (75)
485 PHA00728 hypothetical protein 62.1 9.1 0.0002 33.8 3.4 45 282-330 5-50 (151)
486 PRK06835 DNA replication prote 61.9 67 0.0015 32.1 9.9 72 247-318 1-87 (329)
487 PF07889 DUF1664: Protein of u 61.6 1.1E+02 0.0025 26.8 10.5 70 251-326 57-126 (126)
488 PF08961 DUF1875: Domain of un 61.5 2.7 5.8E-05 40.3 0.0 54 278-331 118-171 (243)
489 TIGR00219 mreC rod shape-deter 61.5 22 0.00047 34.8 6.3 38 275-312 66-107 (283)
490 cd00890 Prefoldin Prefoldin is 61.4 38 0.00083 28.1 7.0 46 279-324 84-129 (129)
491 KOG0837 Transcriptional activa 61.3 42 0.0009 33.1 8.0 61 260-323 201-261 (279)
492 PF06428 Sec2p: GDP/GTP exchan 61.2 56 0.0012 27.5 7.9 67 267-335 7-74 (100)
493 PF14389 Lzipper-MIP1: Leucine 61.2 75 0.0016 25.9 8.4 63 261-323 1-81 (88)
494 PF12128 DUF3584: Protein of u 61.1 74 0.0016 37.1 11.4 71 249-319 464-534 (1201)
495 PRK06569 F0F1 ATP synthase sub 60.9 1.3E+02 0.0028 27.3 10.8 67 253-322 40-107 (155)
496 PF10481 CENP-F_N: Cenp-F N-te 60.6 58 0.0013 32.4 8.9 78 248-325 26-103 (307)
497 PF11853 DUF3373: Protein of u 60.4 5.6 0.00012 42.0 2.1 52 284-336 20-71 (489)
498 PF08286 Spc24: Spc24 subunit 60.2 2.9 6.3E-05 35.5 -0.0 44 284-327 1-44 (118)
499 PF15070 GOLGA2L5: Putative go 60.2 57 0.0012 35.6 9.7 60 264-323 4-63 (617)
500 PF06785 UPF0242: Uncharacteri 60.0 39 0.00085 34.5 7.8 58 267-324 60-120 (401)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=9.7e-63 Score=445.74 Aligned_cols=166 Identities=58% Similarity=1.026 Sum_probs=153.5
Q ss_pred CCCCCCCCccCCCCCCCCC-CCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCC-CCCCCccccCCCCCCCCCCCCCC
Q 019071 1 MGTGEENTSAKTAKTASST-QEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVP 78 (346)
Q Consensus 1 mg~~e~~~~~k~~k~~s~~-~~~~~~~~~pdW~~smQAYy~~~~~pp~y~~s~va~-~~phPYmWg~q~~m~ppygtp~P 78 (346)
||++|++|++|.+|+++++ ++|+++++||||+ +|||||++| ++|+||+++||+ |+|||||||+||+||||||||||
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs-~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~p 78 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWS-AMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVP 78 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccH-hhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCC
Confidence 9999999999999988864 5799999999999 599999999 889999999995 99999999999999999999999
Q ss_pred CccccCCCCcCCCCCCCCC--------------CCCCCCCCCC-CCCCCcccccccccccCCCCC-C----CCCCccccc
Q 019071 79 YQAIYPPGGVYAHPSMATT--------------PTAAPTNTEP-EGKGPEAKDRASAKKSKGTPG-G----KAGEIVKAT 138 (346)
Q Consensus 79 Y~a~yp~Gg~yaHP~mp~~--------------p~~~~~~~e~-~~k~~~~~~~~~~kk~Kg~~G-~----k~~~~gk~~ 138 (346)
|+||||||||||||+||+. +..+++++|+ ++|++++||++++||+||+|| + ||++++|++
T Consensus 79 Y~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~ 158 (189)
T PF07777_consen 79 YPAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTS 158 (189)
T ss_pred CccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCccc
Confidence 9999999999999999962 2347889999 599999999999999999994 3 889999999
Q ss_pred cCCCCCCCccCccCCCCCCCCCCccCcCCC
Q 019071 139 SGSGNDGVSQSAESGSDGSSDASDENGNQQ 168 (346)
Q Consensus 139 ~gs~~~~~s~S~esg~~gSsdgsd~ns~~~ 168 (346)
++++|++.|||+|||+||||||||+|++++
T Consensus 159 ~~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~ 188 (189)
T PF07777_consen 159 GSSANDGSSQSSESGSEGSSDGSDGNTNND 188 (189)
T ss_pred cCCCCCccCccccccccccccCcCccccCC
Confidence 999999999999999999999999998753
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.50 E-value=1.1e-13 Score=105.32 Aligned_cols=64 Identities=50% Similarity=0.738 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 313 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~ 313 (346)
|++.|+.+|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999999999999999999999999999999999999999998873
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.44 E-value=5.2e-13 Score=101.90 Aligned_cols=62 Identities=53% Similarity=0.748 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 252 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 313 (346)
Q Consensus 252 e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~ 313 (346)
+.|+.+|+++||+||++||.||++|+.+|+.+|..|+.+|..|+.++..|+.++..|+.++.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999999999999999998888888877663
No 4
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.35 E-value=2.2e-12 Score=124.07 Aligned_cols=63 Identities=35% Similarity=0.399 Sum_probs=57.6
Q ss_pred chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 244 DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 244 ~~~~~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
..-+.||.-+||+-|+++|||+||.||+|||+|+.+||.||..||.+|..|-+||+.|++-+.
T Consensus 281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 344678889999999999999999999999999999999999999999999999999977553
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.31 E-value=1.1e-11 Score=116.67 Aligned_cols=80 Identities=35% Similarity=0.463 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcch
Q 019071 252 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 252 e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
|+|-+|||++||.+|+-+|.|||+++++||.+|..|..||+.|+.+.+.|++.++.|..+|.+|..+|+.++ +.|.+|
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~--~~l~~~ 144 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR--QELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHhh
Confidence 446899999999999999999999999999999999999999999999999999999999999999999887 556665
Q ss_pred hh
Q 019071 332 EQ 333 (346)
Q Consensus 332 ~~ 333 (346)
.+
T Consensus 145 ~~ 146 (292)
T KOG4005|consen 145 KQ 146 (292)
T ss_pred HH
Confidence 54
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.20 E-value=5.3e-11 Score=122.06 Aligned_cols=71 Identities=39% Similarity=0.465 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 246 WIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 246 ~~~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
...|.+-+||+.|+++|||||..||+|||+|++.||.++..|..||+.|+.|...|++++..|..||..|+
T Consensus 273 ~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 273 VGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred CccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 34688999999999999999999999999999999999999999999999999999999999999999987
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.18 E-value=3.3e-11 Score=122.03 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 248 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 248 ~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+|+.+||.|||++|++||+.||+|||+|++.||.||....+||++|++++..|..++..|..+++.|...+....
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~a 320 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVA 320 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcc
Confidence 4789999999999999999999999999999999999999999999999998887777777777777766655443
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.16 E-value=1.9e-10 Score=85.15 Aligned_cols=50 Identities=50% Similarity=0.747 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
++.||+ +||+||++||.||++++++|+.+|..|+.+|..|..+|..|+.+
T Consensus 5 ~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 5 KRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777 99999999999999999999999999999999999999888654
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.66 E-value=1.1e-07 Score=90.94 Aligned_cols=68 Identities=31% Similarity=0.477 Sum_probs=59.4
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 243 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 243 ~~~~~~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
.+.++.+++.+|-+|.+++||++|++||.||.++|.+||.+|..|..+|..|-.++..|++...+++.
T Consensus 195 spid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~ 262 (279)
T KOG0837|consen 195 SPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ 262 (279)
T ss_pred CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55667788888888889999999999999999999999999999999999999999888766655544
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.48 E-value=2.2e-09 Score=87.65 Aligned_cols=67 Identities=33% Similarity=0.484 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 249 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 249 DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
+..++|..||+.+||.+|++||.||.+++++|+.++..|+.+...|..++..|+.++..|...+..|
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999999888888877777777766665555554443
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.31 E-value=3.4e-06 Score=81.92 Aligned_cols=56 Identities=32% Similarity=0.477 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 256 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 256 ~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
.|.+++|+.||-|.|+||+++.|.|+.+++.|+.+|++|+.++..|.+|+..|+.-
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777889999999999999999999999999999999998887777766543
No 12
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.18 E-value=9.2e-06 Score=74.82 Aligned_cols=128 Identities=23% Similarity=0.365 Sum_probs=75.4
Q ss_pred chhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCC-CCCCCCCCCccccCCCCcCCCCCCCC--CC--CC----
Q 019071 30 DWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLM-PPYGTPVPYQAIYPPGGVYAHPSMAT--TP--TA---- 100 (346)
Q Consensus 30 dW~~smQAYy~~~~~pp~y~~s~va~~~phPYmWg~q~~m~-ppygtp~PY~a~yp~Gg~yaHP~mp~--~p--~~---- 100 (346)
|=. ....|.- =...=.||++. ++||||- ..++ .| +||||+ ||. +||+||+ +| |+
T Consensus 22 ~~~-~~~~ypD-Ws~mQAYyg~~----~~p~~f~---s~va~sp--~phPYM----WG~--~q~mmPPYGtP~pY~A~Yp 84 (189)
T PF07777_consen 22 DQP-TPHVYPD-WSAMQAYYGPG----APPPYFN---SAVASSP--QPHPYM----WGP--QQPMMPPYGTPVPYPAMYP 84 (189)
T ss_pred CCC-CCccCCc-cHhhhhccCCC----CCCcccC---cccCCCC--CCCCcc----cCC--CccccCCCCCCCCCccccC
Confidence 444 3666643 22344688873 7789987 3343 35 789999 999 9999997 33 54
Q ss_pred -----CCCCCCCC---------------CCCCcccccccccccCCCCCCCCCCccccccCCCCC--CCccCccCCCCCCC
Q 019071 101 -----APTNTEPE---------------GKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGND--GVSQSAESGSDGSS 158 (346)
Q Consensus 101 -----~~~~~e~~---------------~k~~~~~~~~~~kk~Kg~~G~k~~~~gk~~~gs~~~--~~s~S~esg~~gSs 158 (346)
+|++|... +-.+.+.|.. ..|.+++ |+....|+++|...+ ...+.+++++..+.
T Consensus 85 hGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~---p~Kss~~-kd~~~~KksKg~~g~~a~s~~n~~~gk~~~~ 160 (189)
T PF07777_consen 85 HGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETD---PGKSSGN-KDKGSMKKSKGFDGGLAMSIKNGESGKTSGS 160 (189)
T ss_pred CCccccCCCCCcccccCCCcccccccccCCCCcccccc---cccCcCc-cccccccccccccccceeeccCCccCccccC
Confidence 55555421 1122222210 2344544 666666787776632 23356677777776
Q ss_pred CCCccCcCCC----CCcccccccc
Q 019071 159 DASDENGNQQ----KGSFDKMLAD 178 (346)
Q Consensus 159 dgsd~ns~~~----k~s~~~~~~~ 178 (346)
.++|+.++.. ++|+|+.+++
T Consensus 161 s~n~~~Sqs~eSgsegSSdgSD~N 184 (189)
T PF07777_consen 161 SANDGSSQSSESGSEGSSDGSDGN 184 (189)
T ss_pred CCCCccCccccccccccccCcCcc
Confidence 7778777733 5556655543
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=98.10 E-value=7.7e-06 Score=78.80 Aligned_cols=57 Identities=30% Similarity=0.504 Sum_probs=48.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 255 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 255 R~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
-..|+.+|-+|+||||.++|...+++..||..|+.||+.|+.+|..|+.++..|+.-
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999999999999999999997775555555443
No 14
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.74 E-value=0.00028 Score=61.64 Aligned_cols=67 Identities=27% Similarity=0.436 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 251 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 251 ~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
-.+|..||-++||=-|.-||-|+-..-++|| .++..|..+|+.|++++..+..|...|+.++.+|..
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE-------~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELE-------KEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999987666654 566777777777777888888888888888888874
No 15
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.51 E-value=0.00018 Score=76.08 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=61.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCc
Q 019071 253 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK-EDLSRLCGPE 326 (346)
Q Consensus 253 ~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr-~~L~~L~g~~ 326 (346)
.|-.||+=+||.||++||+||-.-|..||.+|+.|+.|-++|.+|-..+...+..++.+...|- +.+..|+.++
T Consensus 489 IrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~e 563 (604)
T KOG3863|consen 489 IRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDEE 563 (604)
T ss_pred hhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456788899999999999999999999999999999999999998888888888888888874 3445555444
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.95 E-value=0.0039 Score=52.80 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
..+.+|+.++..|-.+...|+.++..|-+++..|+.||..||++|..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999999865
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.82 E-value=0.016 Score=54.25 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 250 ERELKRQKRKQSNRE-SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 250 E~e~KR~RRk~~NRE-SARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
|+++...+-++.|-. .........++.+++++..+..|+.+|++|+.++..++.+++.|+.+|..++..+.
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444422 22222333355566677777778888888888888888877777777777776543
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.76 E-value=0.0068 Score=51.71 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..+..|+.++..|..+...|+.++..|-+++..|+.||..||++|..+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999999999999873
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.56 E-value=0.015 Score=45.35 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
+.++.|=..++.|+.||..|+.++..+..+...|...|..-+.+|+.|- ..+..|++
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI--~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI--TRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhcc
Confidence 4567777777778888888888888888888888888888888888876 55666654
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.50 E-value=0.018 Score=45.63 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
++.||.+|..+-..+..|+.++..|+++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544444444444444444444
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.48 E-value=0.0093 Score=53.97 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCC
Q 019071 283 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 336 (346)
Q Consensus 283 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~ 336 (346)
....|+.||..|+.++..|+++++.|+.||..|..++..+. ++-..|..+|+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~--eDY~~L~~Im~ 149 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE--EDYQTLIDIMD 149 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 45667778888888888888888888888888888877776 55556655553
No 22
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=96.24 E-value=0.026 Score=45.69 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
-++|..++..|+.....|..++...+++|++|+.||..|..-|..|...
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888999999999999999999999999999999999999998543
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.023 Score=45.14 Aligned_cols=55 Identities=29% Similarity=0.366 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchh
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 332 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~ 332 (346)
-+.-|+.+|+.|+.+|..|..++..++...+.|+.||..|+++-...+ +.|+.|.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ--erlrsLL 73 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ--ERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 345567788888888888888888888888888888888776655544 4455444
No 24
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=96.08 E-value=0.056 Score=52.00 Aligned_cols=86 Identities=24% Similarity=0.339 Sum_probs=62.6
Q ss_pred chhhhhHH-HHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 244 DQWIQDER-ELKRQKRKQ-----SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 244 ~~~~~DE~-e~KR~RRk~-----~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
++...+|+ ..|++|-+. +.|.-||-+.+ ..++.+|.++-+.|+.||+.|+.+...|-.++++|..+...|++
T Consensus 62 ~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~em--e~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~ 139 (292)
T KOG4005|consen 62 DHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEM--EYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ 139 (292)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445665 444555443 22333332222 34578999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchhcch
Q 019071 318 DLSRLCGPEAVANL 331 (346)
Q Consensus 318 ~L~~L~g~~~~s~L 331 (346)
+|..+......-++
T Consensus 140 ~l~~~~~~~~~~~~ 153 (292)
T KOG4005|consen 140 ELAELKQQQQHNTR 153 (292)
T ss_pred HHHhhHHHHHHhhH
Confidence 99998765554444
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.99 E-value=0.051 Score=43.09 Aligned_cols=47 Identities=36% Similarity=0.464 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+.-|+.+++.|+.+|..|..+...|+.++++|+.|-..+..+|..|
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555544
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.97 E-value=0.037 Score=44.71 Aligned_cols=58 Identities=29% Similarity=0.354 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 334 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~ 334 (346)
.-+.-|+.+|+.|+.+|..|..++..++.....|+.||..|+++....+ +.|+.|.-.
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq--erLr~LLGk 75 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 3455677788888888888888877766666666667777766665554 555554433
No 27
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.73 E-value=0.028 Score=40.75 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 286 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+|+.+...|+...+.|+.+++.|..||..|++++..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666677777777777777777776665
No 28
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=95.69 E-value=0.00043 Score=70.04 Aligned_cols=68 Identities=31% Similarity=0.373 Sum_probs=58.9
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 245 QWIQDERELKRQKRKQSNRESARR---SRLRKQAECEELQARVETLS-NENRNLRDELQRLSEECEKLTSEN 312 (346)
Q Consensus 245 ~~~~DE~e~KR~RRk~~NRESARR---SR~RKk~~leeLE~rv~~Le-~EN~~L~~el~~L~~e~~~L~~EN 312 (346)
..+..+.+.|+.+|+++|+.+|.+ ||.|++....+|+.+|+.|+ .++..|..++..|+++.+.|+.+.
T Consensus 145 ~~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l 216 (395)
T KOG1414|consen 145 SVLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKEL 216 (395)
T ss_pred CCCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHH
Confidence 345677788999999999999999 99999999999999999999 999988888888777777666554
No 29
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.55 E-value=0.16 Score=46.50 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=55.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 255 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 255 R~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+.+.....+..-+.-.......+.+++.-++.|..|...|.-++..|.+++..|+.||..|-+++.+..+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555556666778888888899999999999999999999999999999999998877654
No 30
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=95.53 E-value=0.26 Score=40.42 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.-++|..+++.+=|++=..|.-+.....+|+.+++.|......|-.+|.....++..|+.-|.++..+|....
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999998988888888888889999999999999999999999999999999999999999998764
No 31
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.49 E-value=0.058 Score=46.07 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
..+..|+.++-.|-++...|++.+..|-+|+..|+.||..||++|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45788999999999999999999999999999999999999999988
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=95.41 E-value=0.081 Score=41.23 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+++++||.++.-++.-+.+|...|.....++..|+.+...|..+|..+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999999999999999999999999999873
No 33
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.33 E-value=0.083 Score=41.30 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+..|+.+|+.|-..+..|+.++..|+++...+..|+..|.++...-+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999887655
No 34
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.32 E-value=0.082 Score=55.14 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..+++||.+++.|+.|.+.|.++...++++++.|+.||.+|+.+++.+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999999999996543
No 35
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.1 Score=41.55 Aligned_cols=53 Identities=36% Similarity=0.453 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
=|-++++|..+-..|..|-+.++...+.|..++++|+.|...+.++|..|-|.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999988763
No 36
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.13 E-value=0.33 Score=45.54 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 270 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
+..-+++..+|+.+++.++.+..+|..+++.|+++++.++.|+..|+.++..+....
T Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 113 DNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777788888888888888888888888888888888888888888776433
No 37
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=95.11 E-value=0.13 Score=49.37 Aligned_cols=54 Identities=31% Similarity=0.403 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+--+..++++..+-+.|..+|..|..+++.+++++..|+.||++|.+.+..|.|
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 334455666666777777777777777788888888888888888888888764
No 38
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.83 E-value=0.15 Score=41.24 Aligned_cols=51 Identities=33% Similarity=0.462 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
|-++++|+.+-..|..++..++..-..|.+++++|+.|...+.++|..|-|
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888888888888888888877765
No 39
>PRK00295 hypothetical protein; Provisional
Probab=94.71 E-value=0.23 Score=38.77 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+++++||.++.-++.-...|...|...++++..|+.+...|..+|..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999999999999999998875
No 40
>PRK04325 hypothetical protein; Provisional
Probab=94.70 E-value=0.23 Score=39.45 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+++++||.++.-++.-...|...|...+.++..|+.+.+.|..+|..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999998875
No 41
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.69 E-value=0.22 Score=39.30 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+++.+||.++.-++.-...|...|...+.++..|+.+.+.|..+|..+..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357899999999999999999999999999999999999999999988753
No 42
>PRK02119 hypothetical protein; Provisional
Probab=94.68 E-value=0.23 Score=39.38 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+++.+||.++.-++.-..+|...|...++++..|+.+...|..+|..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999999999999999999999999999888875
No 43
>PRK00736 hypothetical protein; Provisional
Probab=94.66 E-value=0.23 Score=38.74 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+++++||.++..++.-...|...|....+++..|+.+...|.++|..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999998875
No 44
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.64 E-value=0.34 Score=47.25 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=51.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Q 019071 257 KRKQSNRESARRSRLRKQAECEELQARVE-------TLSNENRNLRDELQRLSEE-----------CEKLTSENNSIKED 318 (346)
Q Consensus 257 RRk~~NRESARRSR~RKk~~leeLE~rv~-------~Le~EN~~L~~el~~L~~e-----------~~~L~~EN~~Lr~~ 318 (346)
.+-+.-|+=-+.+..--.++-.+|+.++. .|+.+|+.|+-++..++++ ...|+.+|..+++.
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~ai 106 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAI 106 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554 4555555555555555544 34677888888888
Q ss_pred HHHhcCCchhcchhhcCCC
Q 019071 319 LSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 319 L~~L~g~~~~s~L~~~~~~ 337 (346)
+++|+ .-|+.|+|.+++
T Consensus 107 keql~--kyiReLEQaNDd 123 (333)
T KOG1853|consen 107 KEQLR--KYIRELEQANDD 123 (333)
T ss_pred HHHHH--HHHHHHHHhccH
Confidence 88887 889999999987
No 45
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=94.57 E-value=0.3 Score=43.01 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+|..+...|.++++.|..||.+++.++..+..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888887763
No 46
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.55 E-value=0.51 Score=41.28 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=44.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+..|-...||..-....++...++.|+..++.|+.++..+..++..++.+...|..++..+...+....
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666677777777777777777777777666666666666666655555555544443
No 47
>PRK04406 hypothetical protein; Provisional
Probab=94.51 E-value=0.27 Score=39.20 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+++.+||.++..++.-+..|...|...+.++..|+.+.+.|..+|..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788888888888888888999998888889999988888888888765
No 48
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.38 E-value=0.18 Score=36.60 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.||...+.|+.....|+.+...|..+++.|+.|...|+..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478888888888888888888888888999999998888764
No 49
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.37 E-value=0.69 Score=41.11 Aligned_cols=68 Identities=31% Similarity=0.317 Sum_probs=55.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 256 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 256 ~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
....+.|++.+-+--.-.++.|+.|+.++..+..+...|..++..|+.+...|..+....+.++..|.
T Consensus 33 Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 33 LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888888888888888888888888888888888888888888888888888877777775
No 50
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=93.94 E-value=0.12 Score=50.29 Aligned_cols=39 Identities=36% Similarity=0.464 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 019071 284 VETLSNENRNLRDELQRLSEECE----KLTSENNSIKEDLSRL 322 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~----~L~~EN~~Lr~~L~~L 322 (346)
+..|++||++|++|+..|+.+.+ .|+.||.+||+.|.--
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34466777777777666544433 4899999999877654
No 51
>PRK00846 hypothetical protein; Provisional
Probab=93.91 E-value=0.39 Score=38.69 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+++++||.++...+.-...|...|...+..+..|+.+...|.++|+.+.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788899999988888899999999999999999999999999888886
No 52
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=93.90 E-value=0.089 Score=47.96 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|+++|.++.+--++|.-|..|| .|.+.|+.++++||.+|.+|.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777776666 334444555555554444444
No 53
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.72 E-value=0.86 Score=42.91 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.-...+.++++++.++..|+.+.+.++.++..+++++..++.++...+..|.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666666666666666666666666655555544
No 54
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=93.72 E-value=0.45 Score=45.17 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+.+.++++.+.+++.++.++..|+++.+.+..|+..|..|++.|++++..
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 34455555556666666677778888888888888888888888877754
No 55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.67 E-value=0.68 Score=49.25 Aligned_cols=63 Identities=27% Similarity=0.375 Sum_probs=31.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 259 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 259 k~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.++...........-+.+++.|+..+...+.++..|..+.+.|....+.|..|+..|+.++..
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555555555555555555555554444444444444444433
No 56
>PRK11637 AmiB activator; Provisional
Probab=93.64 E-value=0.87 Score=46.32 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 268 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 268 RSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.....-+.+++.|+.++..++.+...+..+|..++.++..|+.+...|+.+|..+.
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666666666666666666666666666666666666666555543
No 57
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.64 E-value=0.3 Score=41.46 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
+|=.++..|+.....|..++..|+..+..|..||.+|+-+...|+ +.|..+.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr--~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR--ERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 456677888888888888888888888888888888888888887 66666554
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.99 E-value=0.75 Score=50.29 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
.|.|..|+.+|+.|...|+.++....+++..|+.|.++|+..
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777888888888888888888888888888888777654
No 59
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=92.91 E-value=0.018 Score=58.52 Aligned_cols=56 Identities=32% Similarity=0.399 Sum_probs=44.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 255 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 255 R~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
+.|=..+||.||-|||.|||.++..|+.+.+.+..+|..|. ..+++.|..++..+.
T Consensus 286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~------~~~~~~l~~~~~~~~ 341 (395)
T KOG1414|consen 286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL------LNEVELLRNEVKQLS 341 (395)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc------cchhhHHHhHHhhhc
Confidence 35558899999999999999999999999999999999988 233344555555543
No 60
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=92.84 E-value=0.66 Score=44.29 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQRLSEECE---KLTSENNSIKEDLSR 321 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~---~L~~EN~~Lr~~L~~ 321 (346)
...|.+||.+|++|+..|+.+.. .|+.||.+|++.|.-
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455555555555555544444 788999999987764
No 61
>PRK11637 AmiB activator; Provisional
Probab=92.80 E-value=1.2 Score=45.34 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
...+..++.++..++.+...+..++..|+.++..++.+...++..|
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555544444444444333
No 62
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=92.62 E-value=0.53 Score=45.66 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 263 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 263 RESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
|..+|.--..-+.++.+|+.+.+.|+.++.+|+.++..|+..+.
T Consensus 210 R~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 210 RDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444455555555555555555555555444433
No 63
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.53 E-value=0.42 Score=51.27 Aligned_cols=46 Identities=35% Similarity=0.526 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.++..|+.+|+.|+.||..|+.++..|+.+++.|+.+..+++.++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888888887777777776655
No 64
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=1.1 Score=49.62 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=6.1
Q ss_pred hhhhcCCCCCCC
Q 019071 35 MQAFYGAGATPP 46 (346)
Q Consensus 35 mQAYy~~~~~pp 46 (346)
+|.|-=|.+.||
T Consensus 82 LqG~~lP~~LPP 93 (1118)
T KOG1029|consen 82 LQGIQLPPVLPP 93 (1118)
T ss_pred hcCCcCCCCCCh
Confidence 355555555554
No 65
>smart00338 BRLZ basic region leucin zipper.
Probab=92.16 E-value=1.4 Score=33.44 Aligned_cols=39 Identities=33% Similarity=0.492 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
..+..|+.+...|..++..|+.++..|..|+..|+.++.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777777777777777776653
No 66
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.12 E-value=1.1 Score=35.33 Aligned_cols=48 Identities=31% Similarity=0.448 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDE-------LQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~e-------l~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+++.|.+++...+.+|..|+.+ +..+-.++..|+.||..|+.+|..+
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555444 4444555555555555555555443
No 67
>PRK04406 hypothetical protein; Provisional
Probab=92.07 E-value=1.3 Score=35.32 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
++.|+.|+..|+....-+..-|+.|.+.+.....++..|+.+|..|. +.+..+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~ 60 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV--GKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcc
Confidence 45799999999999999999999999999999999999999999996 56666654
No 68
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=92.05 E-value=0.66 Score=39.39 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
|-.+|..|+.-...|.+++..+++|+.+|+.||+.|-+-|+.|...
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 3455666677777788888888999999999999998888887643
No 69
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.02 E-value=0.55 Score=41.91 Aligned_cols=52 Identities=33% Similarity=0.431 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 273 KQAECEELQARVETLSNENRNLRDEL--QRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el--~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
-++++.+|+.++..|+.+...|...+ ..|..++..|+.|+..|..+|..|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777777777776665 56778888888888888888888875
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.02 E-value=0.54 Score=49.15 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
|+.+..+|.++.+.|+++.++|+.....|..+|..+
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555666666666666666666666666666443
No 71
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.97 E-value=0.22 Score=45.92 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
.|.+|+.+++ -+.++.++.+|+.+++.|+.+.++|+..+..|-
T Consensus 91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 91 WRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666555 456667778888888777775555555554443
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.91 E-value=2.7 Score=39.82 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 268 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 268 RSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.-+..-+++++.|+.+++.|+..|..|...+..+++++..|..+...+......|
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777777777777777777777777776666665444433
No 73
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.90 E-value=0.73 Score=44.29 Aligned_cols=46 Identities=33% Similarity=0.418 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 263 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 263 RESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
++.-+.--.+++.++++++.+++.|+.||..|..++..|-.++..|
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 3333333334444444444444444444444444433333333333
No 74
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=91.88 E-value=0.82 Score=42.14 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 305 CEKLTSENNSIKEDLS 320 (346)
Q Consensus 305 ~~~L~~EN~~Lr~~L~ 320 (346)
++.|+.++..|+.+|.
T Consensus 112 l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 112 LEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.86 E-value=1.3 Score=42.70 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
-+.+|..+++.|+.|+..||-+|+.+..++++|....+.|-.+|..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777777777777766666554
No 76
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.85 E-value=2.8 Score=39.70 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+..+|..+++.|+.|.+.|...++.|+..+..++.+..+|..++..+.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555566666655555554
No 77
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.80 E-value=0.72 Score=44.41 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
||.|+..+..++..|+.+++.|+.+|..|=+++.=|+.
T Consensus 98 LE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 98 LEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444445555555556667778888777776643
No 78
>PRK02119 hypothetical protein; Provisional
Probab=91.65 E-value=1.5 Score=34.75 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhc
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 334 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~ 334 (346)
++..|+.|+..|+....-+..-|+.|.+.+.....+...|+.+|..|. +.+..+...
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~--~rl~~~~~~ 59 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA--NKLKDMQPS 59 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence 567899999999999999999999999999999999999999999997 566666543
No 79
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=91.62 E-value=0.55 Score=36.95 Aligned_cols=42 Identities=29% Similarity=0.485 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcch
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
....+..++..++.+++.++.||..|+.++..|..++.|..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~ 66 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 344455555555555566666666666666666655555433
No 80
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=91.57 E-value=0.44 Score=36.61 Aligned_cols=27 Identities=44% Similarity=0.729 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
+++.+|+.+++.|+.+|..|..+++.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444
No 81
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.54 E-value=0.76 Score=38.67 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
.+.++++++|+.+++.|+.+|..|+.++..|+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3455666777777777777777777777777654
No 82
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=91.54 E-value=0.83 Score=39.09 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcch
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
+|=.++..|+.....|..++..|+..+..|..||..|+.+-..|+ ..|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr--~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR--ERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 445566667777777777777777777777777777776666665 444444
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.44 E-value=1 Score=39.85 Aligned_cols=44 Identities=32% Similarity=0.527 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
++.|+.++..|+.++..+-.+|..|...+..|..+...|..+|.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 84
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.42 E-value=4.2 Score=35.53 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+..++++++++..++.+...|..++..+...+..++.|...|+..+.
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444333
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.36 E-value=1.6 Score=45.15 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=59.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
++++-.+++=+.-.+.....++....|+.++..|+.++..|..++......+..++..+..+...|..|.++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4555555666666667777778888999999999999999999999998888999988888888888887765
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.19 E-value=2.8 Score=40.44 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 263 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQ 299 (346)
Q Consensus 263 RESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~ 299 (346)
.+.+++.=.-++.++++|+.+|..++.+.+.++.++.
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555554444444333
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.19 E-value=2.6 Score=45.04 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
..+...+.+.+.|+.++..|......|..+...|..++..++.+|..|
T Consensus 178 ~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L 225 (546)
T PF07888_consen 178 AELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444433
No 88
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.19 E-value=3.8 Score=38.11 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 248 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 248 ~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
..+++....++.+++-+.-+.+-..-+.++..++.++..|+-+++.|..++..|..+...|.
T Consensus 66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777776666666666666677777777777777777777766666666555
No 89
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.11 E-value=1.8 Score=34.64 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+++.+||.++..-+.-..+|...|...+..+++++.+.+.|-+++.+++.
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357889999999888889999999999999999999999999999988874
No 90
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.06 E-value=2.2 Score=39.54 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
+-.+.++.+..+-+..+.+.+.+...|+.++..-+.++..|..++..|+.++.
T Consensus 89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~ 141 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKIL 141 (190)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666543333333333333333333
No 91
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.92 E-value=3.1 Score=31.45 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
..+..|+.+...|..++..|+.++..|..++..|+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555555555544
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.90 E-value=1.9 Score=47.77 Aligned_cols=10 Identities=50% Similarity=0.740 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 019071 272 RKQAECEELQ 281 (346)
Q Consensus 272 RKk~~leeLE 281 (346)
||.+..+|||
T Consensus 397 ~rEaar~ElE 406 (1118)
T KOG1029|consen 397 RREAAREELE 406 (1118)
T ss_pred HHHHHHHHHH
Confidence 3333344444
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.83 E-value=2 Score=42.52 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.+++.|..++..+..++..++.++..|+.+++.|..+...+.+++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~ 254 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQ 254 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554444444444444444433333333333
No 94
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=90.83 E-value=0.93 Score=48.16 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 288 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 288 e~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
++--..|..+|+.|..||+.|+.||..||.+|..|...
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 44456688888888888899999999999888888653
No 95
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.78 E-value=0.74 Score=41.07 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L 301 (346)
+|..++..|+.++..|..+|..|
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 96
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=90.70 E-value=1.1 Score=36.89 Aligned_cols=38 Identities=37% Similarity=0.581 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc
Q 019071 286 TLSNENRNLRDELQRLSEE------CEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e------~~~L~~EN~~Lr~~L~~L~ 323 (346)
-|..+|..|+.+|+.|+.+ ......||.+|++++..|+
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666543 3456677777777776664
No 97
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.65 E-value=1.7 Score=47.53 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
||.|++ +||.++..|+.|.....+++..|+.+++
T Consensus 543 ~r~r~~----~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 543 CRQRRR----QLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555553 3444444444444444444444444443
No 98
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.65 E-value=2.3 Score=44.27 Aligned_cols=49 Identities=35% Similarity=0.422 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
-+++-|+.++..|+.||.+||..+..|+..+++|..+.+++.++|+.++
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3456667788888888888888888888888888888877777776664
No 99
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.64 E-value=4.4 Score=36.38 Aligned_cols=56 Identities=29% Similarity=0.415 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 267 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 267 RRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+..+++.+++++.++..++.+..+...|++++..++++++.++.+...+++.+..+
T Consensus 122 ~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (191)
T PF04156_consen 122 RELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQL 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444444455555555555554444444
No 100
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=90.55 E-value=1.2 Score=47.81 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
..++.+||.+.+.|..|.+++..+++.|++.+.+.+.|..+|+.++++-+ ..+..|.+
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq--~~~~El~~ 149 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ--RQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH--HHHHHHHh
Confidence 35777888888888888888888888888888888888888887777654 34444443
No 101
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.43 E-value=1.1 Score=43.24 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
++++.|||.++..+..++..|+.+++.|+..+.+|-...+-|..
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34457888888888888888888888888888888877766643
No 102
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.39 E-value=3.1 Score=37.91 Aligned_cols=35 Identities=34% Similarity=0.482 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
.++.+|+.+++.|+.+|..|..++..++++++.|.
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 103
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.39 E-value=1.7 Score=33.82 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchh
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 332 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~ 332 (346)
.|+.++..|+....-+..-|+.|.+.+.....+...|+.+|..|. +.|+++.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR--ERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 378889999999999999999999999999999999999998887 6666665
No 104
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.27 E-value=2.3 Score=33.52 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcC
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 335 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~ 335 (346)
.+|+.|+..|+....-+..-|+.|.+.+.....+...|+.+|..|. +.+..+....
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~~~~ 59 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT--EKLKASQPSN 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence 4689999999999999999999999999999999999999999997 5677766543
No 105
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.16 E-value=4.1 Score=38.35 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
.+++.+++.|+.+++.++.++..++.++..+++.+
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333
No 106
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=90.15 E-value=2.1 Score=39.51 Aligned_cols=56 Identities=23% Similarity=0.496 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++...+.+ .+.+..|+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~-~~ei~~lk~ 177 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH-QEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 56888888888888888888888888888888877777666555544 333444443
No 107
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=90.13 E-value=1.3 Score=33.69 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
+++||.++..|+.....|+.+++.|++.++.+..-.+.|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777766666666666666665555555555444333
No 108
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=90.08 E-value=1.7 Score=35.90 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
|+.|-...+.+|..|+.+|..|..++..|+.+++..+.|-..|-.
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667777777777777777776666666666665543
No 109
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=90.05 E-value=2.1 Score=33.88 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|.+.|..|..+-+.|......+...|..|+.++..+..+...|+.++..+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666554
No 110
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.93 E-value=1.6 Score=37.39 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 259 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 259 k~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
...-.|..+-|+..=..+-++|+..+..|+.++..+..++..|+.++..++..
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554455555555555555555555555555555555444433
No 111
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.93 E-value=2.1 Score=45.68 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 265 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 265 SARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+.+.|..-++.+.++...+..|+++...++.++..|..+...|+.||.+|+.+|..++.
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344444555556666777777788888888888888888888888888888888877764
No 112
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=89.91 E-value=0.34 Score=37.20 Aligned_cols=41 Identities=32% Similarity=0.515 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 289 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 289 ~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
.|.+.|+.+|..|.+++..|+.||..||. +..++.+..|..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~----~~~pe~l~q~~~ 54 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ----NASPEQLAQLQS 54 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCSSSSSTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHh
Confidence 35556677777777777888888887775 344555555544
No 113
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.84 E-value=5.2 Score=37.13 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
....+.+|+.++..|+.+.+.|..+.+....++..|+.+...|.++|..
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544444444444444444444444444444443
No 114
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.81 E-value=7.2 Score=33.66 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+-..|..++..++..|..|..+|.-|-.+|..+
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344566667777777777777777777776654
No 115
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.74 E-value=1.4 Score=37.04 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
.+.+|+++++.++.+|+.|+.+...|+++++.|+..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 455667777777777777777777777777766653
No 116
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.73 E-value=1.4 Score=43.08 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLC 323 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~----~EN~~Lr~~L~~L~ 323 (346)
-=.+....++++..++..++.++.++..++..|+.++..|+ .++..|..+++.++
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555666666666666666655555443 33444445554443
No 117
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=89.70 E-value=3.3 Score=31.59 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.+++|...|..|..+...|..++..|+.+....+.|-.+--++|-.+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356777777777777777777777777777776666666555555443
No 118
>PF15294 Leu_zip: Leucine zipper
Probab=89.69 E-value=1 Score=44.26 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
|..++..|+.||..|+.++..++.+|.....|...|..+|..|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999998874
No 119
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.63 E-value=3.2 Score=42.01 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 270 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
=.|-+.+...||.-+..+++||+.|.-+++.+.++|...+.|++.|..+|.+
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 3456667777888888999999999999999999998888888888666554
No 120
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=89.61 E-value=1.5 Score=43.50 Aligned_cols=72 Identities=28% Similarity=0.304 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 251 RELKRQKRKQSNR-----ESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 251 ~e~KR~RRk~~NR-----ESARRSR~RK-k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
-|.|-.+-++.|- .++-.+..-- |..|++|+..+..|+.++.+...+++++++.+..|+.|...|+++|...
T Consensus 89 vEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 89 VEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555553 2444444333 5667788888888888887777888888888888999999998888754
No 121
>PRK00846 hypothetical protein; Provisional
Probab=89.57 E-value=2.1 Score=34.51 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
+.|+.|+..|+....-...-|+.|.+.+.....+...|+.+|..|. +.+.++...+.+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~--~rL~~~~~s~~~ 66 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRSTLFA 66 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccCC
Confidence 6788999999999999999999999999999999999999999998 678887755543
No 122
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.47 E-value=2 Score=37.24 Aligned_cols=66 Identities=29% Similarity=0.411 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR---DELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~---~el~~L~~e~~~L~~EN~~L 315 (346)
|+-....||+..-..+.+.--.|=.+.-+.|..++-.|..+|..++ .++..|+.++..|......+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555555444445555556666666666664442 33344444444444444333
No 123
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.46 E-value=3 Score=47.54 Aligned_cols=57 Identities=25% Similarity=0.427 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 266 ARRSRLRKQAECEELQARV-ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 266 ARRSR~RKk~~leeLE~rv-~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+++..+....+..++.+. ..|..+..++..+++.|+.+++.|+.++.+|++++..+
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555554 44445555556666666666666666666666665554
No 124
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.44 E-value=3.8 Score=39.54 Aligned_cols=51 Identities=35% Similarity=0.452 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
...++..|..++..++.+...|..++..|..+.+.|..+...|+.++..+.
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777777777777777666665
No 125
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=89.35 E-value=1.1 Score=42.11 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhcC
Q 019071 311 ENNSIKEDLSRLCG 324 (346)
Q Consensus 311 EN~~Lr~~L~~L~g 324 (346)
+...|.+-|..|.+
T Consensus 157 ~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 157 HVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhc
Confidence 33344444555543
No 126
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.31 E-value=2.7 Score=33.04 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
..|+.+++.|..++......+..|..
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344443333333333333
No 127
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=88.94 E-value=8.2 Score=31.80 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=57.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 256 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 256 ~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..+....++..+..=..|...+..||.++..|..|...-.+++-.+.+..+.|..|+..|+..+.+-.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 44566667777778888999999999999999999999999999999999999999999988877654
No 128
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.86 E-value=1.6 Score=36.74 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 280 LQARVETLSNENRNL--RDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 280 LE~rv~~Le~EN~~L--~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
++.|+..++.+...| +..+..|+-++..++-+...|.++|..+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355555555555555 5555555555555555555555555544
No 129
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=88.67 E-value=4 Score=38.23 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 019071 250 ERELKRQKRKQSNRESAR 267 (346)
Q Consensus 250 E~e~KR~RRk~~NRESAR 267 (346)
|+-++|.||-...+.++=
T Consensus 19 eel~~rLR~~E~ek~~~m 36 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLM 36 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566776666655554
No 130
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.62 E-value=7.6 Score=38.50 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 019071 278 EELQARVETLSN 289 (346)
Q Consensus 278 eeLE~rv~~Le~ 289 (346)
.+|+.+.+.|+.
T Consensus 81 ~~le~e~~~l~~ 92 (314)
T PF04111_consen 81 EELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 131
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=88.54 E-value=5.8 Score=41.08 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHH---HHHHHHHHHHHHHHH
Q 019071 252 ELKRQKRKQSNRESARRSRLRKQAECEELQAR-----------------------VETLSNE---NRNLRDELQRLSEEC 305 (346)
Q Consensus 252 e~KR~RRk~~NRESARRSR~RKk~~leeLE~r-----------------------v~~Le~E---N~~L~~el~~L~~e~ 305 (346)
+.|.+|||....+-=||.|..=..+|.+|-.- +..|+++ +.++..+-+.|...+
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n 306 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTN 306 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 33445556666788888888888888887652 2233332 334444445555555
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019071 306 EKLTSENNSIKEDLSRL 322 (346)
Q Consensus 306 ~~L~~EN~~Lr~~L~~L 322 (346)
+.|..++++|+.++..+
T Consensus 307 ~~L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 307 QELALRIEELKSEAGRH 323 (411)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666666666555544
No 132
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.50 E-value=7.6 Score=34.58 Aligned_cols=47 Identities=34% Similarity=0.469 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhc
Q 019071 286 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 334 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~ 334 (346)
.|+.+...|..++..|..++..|+.|+..|...|.... ..|+.|+..
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q--~kv~eLE~~ 102 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ--EKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 33333444444444444445555555555555555554 456655544
No 133
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=88.49 E-value=0.25 Score=41.65 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+|+.|...+..|..+|..|+.++..|+.++..++.+...|+..|...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 578889999999999999999999999988888888888888776443
No 134
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=88.43 E-value=6.1 Score=37.09 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
-+.||...++ ...++..|+.+-..|..++-.+...|..|+.|..+|+.+...+..
T Consensus 163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444443 667788888888888888888888888888888888888877653
No 135
>PRK04325 hypothetical protein; Provisional
Probab=88.40 E-value=2.5 Score=33.50 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
+..|+.++..|+....-+..-|+.|.+.+.....+...|+.+|..|. +.|.++..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~--~rl~~~~~ 58 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY--QQMRDANP 58 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 56788999999999999999999999999999999999999999986 55666543
No 136
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.30 E-value=3.3 Score=35.87 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 019071 310 SENNSIKEDLSRL 322 (346)
Q Consensus 310 ~EN~~Lr~~L~~L 322 (346)
.++.+|+..|..+
T Consensus 96 E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 96 EEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 137
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=88.18 E-value=1.4 Score=35.77 Aligned_cols=45 Identities=27% Similarity=0.505 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcch
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
+..+...+..++..++.+..+|..||..|+-++..+..+..|..+
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~i 77 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERI 77 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 444667777788888888888888888888888888887776544
No 138
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.03 E-value=3.9 Score=43.77 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.|+..++.+-..++.....|..++....++|+.|+.+|..|+.+|+..
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666667777777777777777777777777777777766543
No 139
>PRK00295 hypothetical protein; Provisional
Probab=87.84 E-value=3.3 Score=32.35 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchh
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 332 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~ 332 (346)
|+.++..|+....-+..-|+.|.+.+.....++..|+.+|..|. +.+.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 67889999999999999999998888888889999999998886 5666665
No 140
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.77 E-value=3.4 Score=38.73 Aligned_cols=41 Identities=32% Similarity=0.483 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.|..++..|+.+|..|..+.+.|+..+..|..++..|+.+|
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555555555555555555555444
No 141
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=87.67 E-value=2.3 Score=33.87 Aligned_cols=46 Identities=28% Similarity=0.381 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhc
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECE--------KLTSENNSIKEDLSRLC 323 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~--------~L~~EN~~Lr~~L~~L~ 323 (346)
.+++..+..|+.||-.|+-+|-.|.+.+. .+..||-.|+.++..|.
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~ 56 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLK 56 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666655544 23444444444444443
No 142
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=87.64 E-value=2 Score=32.64 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+..|+.+...|...+..++.+++.|+.+...|.+-+.+|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555444443
No 143
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.50 E-value=6.2 Score=44.59 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.|+.++..|++.++.|..+...||++++.
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555555555555444
No 144
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=87.47 E-value=7.5 Score=38.55 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
.-+|+.|+.+-+.|+.+-.+|.+||..|++-+..
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544443
No 145
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=87.47 E-value=2 Score=36.56 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+..|..++..+.++++.|+.++..+.+++..|
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444443333333
No 146
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.46 E-value=2.4 Score=41.40 Aligned_cols=51 Identities=25% Similarity=0.368 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
=+.+|+.|..+|+.+..+...++.++..++.++..|..+...|++.|....
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777777777777777776654
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.36 E-value=1.6 Score=42.01 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 268 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 268 RSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
++-.-=+..|++|+.+|..|+.+++++.-+|+.++++-..|-.+...+..+++
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~ 106 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA 106 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456688999999999999999999999999999999999999888766554
No 148
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=87.34 E-value=7.7 Score=28.46 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 291 NRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 291 N~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
...|..++..|..++..|..++..|+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444443
No 149
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.29 E-value=1.6 Score=43.47 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+...|..+|..-.+++.....|...|..+|..++
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666666666666666666664
No 150
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.17 E-value=8.4 Score=34.58 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 251 RELKRQKRKQSNRESARRSRL----RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 251 ~e~KR~RRk~~NRESARRSR~----RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
.|+.+.|++..+-.-+=..-+ --..++..|..++...+.+...++.++..++.+...++.+|..|+.+...+..|+
T Consensus 63 ~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ 142 (177)
T PF13870_consen 63 KELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPA 142 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 455666655544332222211 1234455666777777778888888888888888888888888888888888787
Q ss_pred hhcchhh
Q 019071 327 AVANLEQ 333 (346)
Q Consensus 327 ~~s~L~~ 333 (346)
.+.+...
T Consensus 143 ll~Dy~~ 149 (177)
T PF13870_consen 143 LLRDYDK 149 (177)
T ss_pred HHHHHHH
Confidence 7766554
No 151
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=87.07 E-value=4.3 Score=35.53 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 329 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s 329 (346)
-+-.||+.+|..|+.|+..+..-...|...+..|+..+...+.++..+....++.
T Consensus 25 iERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~ 79 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLN 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 3445777888888888888888888888888999999999999988876654443
No 152
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.04 E-value=4.7 Score=38.39 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|+++.+.+.++...|+.+++....+.+.+..+...|+.+.+.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444555555555555555555555555555555555555544
No 153
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=87.02 E-value=3 Score=40.90 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
-||.+++....|+..|+.++..|+..++.++++.+..|+.|+-|+
T Consensus 68 ~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 68 NKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444444444444444444444444444443
No 154
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=86.97 E-value=2.9 Score=35.97 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcc
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 330 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~ 330 (346)
+|=.+|..|+.....|..++..|++.+..|..||..|+-+...|+ +.|..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR--~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR--ERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHhCC
Confidence 455678889999999999999999999999999999999999888 55555
No 155
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.89 E-value=8.5 Score=35.20 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 019071 310 SENNSIKEDL 319 (346)
Q Consensus 310 ~EN~~Lr~~L 319 (346)
.++..|.+++
T Consensus 158 l~~~~~e~k~ 167 (194)
T PF08614_consen 158 LQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 156
>PRK14154 heat shock protein GrpE; Provisional
Probab=86.87 E-value=1.5 Score=41.40 Aligned_cols=8 Identities=13% Similarity=-0.130 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 019071 285 ETLSNENR 292 (346)
Q Consensus 285 ~~Le~EN~ 292 (346)
..|.++.+
T Consensus 76 lRl~ADfe 83 (208)
T PRK14154 76 LRAQAEMD 83 (208)
T ss_pred HHHHHHHH
Confidence 33333333
No 157
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=86.72 E-value=11 Score=36.94 Aligned_cols=49 Identities=14% Similarity=0.368 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.+++.++.++...+.+..+++.++...+.++..|+.+-.+|...+..+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777777777776666666666666665554444
No 158
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.70 E-value=4.9 Score=31.05 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..++...+..|..+.+++......+..|..+...|+.++..++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445666666666666666666666666666666666654
No 159
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.64 E-value=7.1 Score=30.18 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
.-...++.++..-+..|..|..+|..|+++++.|+.
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344566777888888888888888888777777664
No 160
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.63 E-value=6 Score=36.48 Aligned_cols=48 Identities=29% Similarity=0.493 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRL---------------SEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L---------------~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+..+.+|+.+++.|+.+...|+.+++.+ +++++.|+.+|..|+.+|+.
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555554444444443 44445555555555555543
No 161
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=86.58 E-value=3 Score=31.94 Aligned_cols=30 Identities=40% Similarity=0.688 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.++.++..|+.+++.|+.+|..|+.++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555
No 162
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.46 E-value=13 Score=33.33 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
...++.++..++.....+.+++..|.+++..++.+-..++.++..+.
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 171 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQ 171 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666677777777776666666677777777777663
No 163
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=86.46 E-value=5 Score=36.44 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
++.++..+..+++.|+++++..+.|...|+.+++.+..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677788888888888888888888888877753
No 164
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.22 E-value=3.4 Score=41.78 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+++++|.++-+.|..-.++|+.+++.|+++...|......|+.+.++
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444444444444444444444455555555555544455444444
No 165
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.21 E-value=2.8 Score=42.76 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhcchhhcCCC
Q 019071 291 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 337 (346)
Q Consensus 291 N~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g-~~~~s~L~~~~~~ 337 (346)
+..|..++..|+.++..++.|...|+++|.+|+. +..+.++...+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (398)
T PTZ00454 31 LEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDS 78 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcC
Confidence 3333333444444444445555555555666555 3345555554444
No 166
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=7.2 Score=39.56 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 248 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 314 (346)
Q Consensus 248 ~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~ 314 (346)
.+++.+|+.++.+-+|..|-.+-.|+.. |+|..-...|+.+.+.|.+++..|+..++-|....++
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445555555566666666555555544 4555555555666666666666666666666554444
No 167
>PRK14162 heat shock protein GrpE; Provisional
Probab=86.13 E-value=2 Score=40.13 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
+.+++.|+.++..|+.++.+++.+++-++
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 168
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.08 E-value=2.4 Score=42.80 Aligned_cols=61 Identities=31% Similarity=0.373 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhcchhhcCCC
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 337 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g-~~~~s~L~~~~~~ 337 (346)
+..|+.++..|+.+++.|+.++..|..++..++.+...|++++..+.. +..+..+...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 64 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDD 64 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCC
Confidence 345555555666666666666666666667777777777777777665 3345555555544
No 169
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.07 E-value=7 Score=39.20 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
..|...+...+.+|..|..++..|++++..+..++..||+++..++.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 45666677777788888888888888888888888888887777654
No 170
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=85.95 E-value=2.5 Score=31.80 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++.+|++|+.++..-+ +.=...-...+.++..|+.||..|+++|..++
T Consensus 2 w~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 2 WLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666665544322 11111223445555666666666666666554
No 171
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=85.90 E-value=3.1 Score=42.51 Aligned_cols=61 Identities=28% Similarity=0.288 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 264 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 264 ESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+.|..-|+|-.+--...|..++.+.-|...|+.+++++.+....|+.|+..|++-+..|..
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555666776666667777888888888999999999999999999999999998888764
No 172
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.87 E-value=3.3 Score=38.75 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+++++|..-+..|+.+|..|..+...+.++...|..+...|.++-.++.
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~ 115 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLL 115 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45677777777777777777766666666666555555555555544443
No 173
>PRK14143 heat shock protein GrpE; Provisional
Probab=85.82 E-value=2.3 Score=40.81 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDE 297 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~e 297 (346)
++|..++..|.++...++++
T Consensus 84 ~elkd~~lR~~AdfeN~RKR 103 (238)
T PRK14143 84 EELNSQYMRIAADFDNFRKR 103 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334443444443333333
No 174
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.68 E-value=6.4 Score=42.15 Aligned_cols=59 Identities=31% Similarity=0.402 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 261 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 261 ~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+-|..+|..-.=-...+.+|+.++..++..+..|..++..|+.++..|..+...++.+|
T Consensus 134 k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 134 KERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34444443332234455666666666666666666666666666666666666665443
No 175
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.67 E-value=3.6 Score=37.93 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+.+.|..-|.-|+.+++.....++.|..++..|...+..
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 176
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=85.60 E-value=9.4 Score=34.58 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 286 TLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
.++.++..|..++..|+.++..|.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 177
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=85.54 E-value=6.8 Score=35.44 Aligned_cols=46 Identities=35% Similarity=0.599 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+|..+|+.|+.+|..|..++..+..+...|......|+.++..++
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 3455666677777777776666666666666666666666666554
No 178
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.51 E-value=2.9 Score=43.85 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 300 RLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 300 ~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+|.++.++|..|..+|+..|.+|.
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555543
No 179
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.43 E-value=15 Score=34.10 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRN---LRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~---L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.++++|+.++...+..... ++.++..+.+++..|+-|+..|..++.++.
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333332 344445555555555555555555555543
No 180
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.40 E-value=8.4 Score=39.89 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
|+.+++.|+.++..+..++..|.+++..+..+
T Consensus 363 l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 181
>PRK00736 hypothetical protein; Provisional
Probab=85.34 E-value=4.1 Score=31.77 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
.++.|+..|+....-+..-|+.|.+.+.....+...|+.+|..|. +.+.++..
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~--~rl~~~~~ 54 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT--ERFLSLEE 54 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 367788888888888888888888888888888888888888886 45555543
No 182
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.20 E-value=2.8 Score=41.79 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRD 296 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~ 296 (346)
+++-+..++..|..+|..|+.
T Consensus 42 El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 42 ELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 183
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=85.19 E-value=5 Score=30.62 Aligned_cols=40 Identities=25% Similarity=0.508 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+++.|..+.+.|..++..|..++..|+.+....+++...
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777666665544
No 184
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=85.12 E-value=15 Score=32.22 Aligned_cols=48 Identities=31% Similarity=0.376 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 276 ECEELQARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN-~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+..|+.....|..+. ..++.++..|---+..|...+..+|.+|..|-
T Consensus 63 ~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 63 EVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 3344444444444333 34445555555556666778888888888875
No 185
>PRK14158 heat shock protein GrpE; Provisional
Probab=84.97 E-value=2.7 Score=39.25 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQR 300 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~ 300 (346)
+++++|+.++..+.++...++++..+
T Consensus 54 ~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 54 AEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 186
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=84.92 E-value=3.4 Score=31.07 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
++...-.....++..|+.||..|+.+|..++.
T Consensus 19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 19 ARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444466788889999999999999987754
No 187
>PF15556 Zwint: ZW10 interactor
Probab=84.91 E-value=15 Score=35.08 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 259 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 259 k~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
..++|.+...-.+....++..|.+....++.....-+.+++.|..++..|+.+--.-+++
T Consensus 118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdK 177 (252)
T PF15556_consen 118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDK 177 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555566666666555555555555555555555555555444333333
No 188
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=84.74 E-value=4.7 Score=35.45 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
-+....+-+..|+.||.-|+..+-.+++.++.=+.....|+++|..+
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34556677888999999999999999999999999999999999865
No 189
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=84.62 E-value=9.7 Score=32.36 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
.+-.++.+++.|...|..|..++..|+.++.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544444444
No 190
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=84.60 E-value=3.3 Score=43.55 Aligned_cols=50 Identities=12% Similarity=0.298 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+++|+.|+.+++.|..++..|..+|+.|+.++..|+.+...++.++....
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~~ 131 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTAT 131 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Confidence 44567777777777788888888888888888888888777777655443
No 191
>PRK14139 heat shock protein GrpE; Provisional
Probab=84.58 E-value=2.8 Score=38.87 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNL 294 (346)
Q Consensus 280 LE~rv~~Le~EN~~L 294 (346)
|+.++..+.++.+.+
T Consensus 51 lkd~~lR~~AefeN~ 65 (185)
T PRK14139 51 LQDSFLRAKAETENV 65 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 192
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=84.53 E-value=15 Score=34.55 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhc
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 329 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s 329 (346)
+-|+||.+ ++.-.+-..|.-..-+++...|+..+..-+.+-...-.+-..++.+...|..|...++.+|.+|+ ..|.
T Consensus 102 ~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ--~qv~ 178 (192)
T PF11180_consen 102 DVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ--RQVR 178 (192)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 34444443 44444555555666677778888877777777777777777777888888888888888888887 6666
Q ss_pred chhhcCCC
Q 019071 330 NLEQSNPT 337 (346)
Q Consensus 330 ~L~~~~~~ 337 (346)
.|+.+.+.
T Consensus 179 ~Lq~q~~~ 186 (192)
T PF11180_consen 179 QLQRQANE 186 (192)
T ss_pred HHHHHhcC
Confidence 66665543
No 193
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=84.51 E-value=2.8 Score=40.95 Aligned_cols=49 Identities=31% Similarity=0.279 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
+-.+..+|+.+.+.|+.++.+|. .+..+.+.|+.||.+||+.|..-...
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL~~~~~~ 112 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELLDFKESS 112 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 34445555555555555555433 34455689999999999988765443
No 194
>smart00340 HALZ homeobox associated leucin zipper.
Probab=84.45 E-value=1.9 Score=31.24 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 298 LQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+.|++-|+.|..||++|+.+|.+|+.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666667777777777777776654
No 195
>PRK14155 heat shock protein GrpE; Provisional
Probab=84.26 E-value=2 Score=40.49 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el 298 (346)
++|+.++..+.++.+.++++.
T Consensus 30 ~elkd~~lR~~AefeN~RKR~ 50 (208)
T PRK14155 30 AALKDQALRYAAEAENTKRRA 50 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333
No 196
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=84.07 E-value=6.9 Score=41.87 Aligned_cols=68 Identities=21% Similarity=0.395 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 252 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE-------NRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 252 e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~E-------N~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
++++.-...+++-.+|...+-+++.+++++++|+.|+.. ..+..++++.|+.+++..+.....|+.+|
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444466677788888888888999999999998874 23445556655555555444444443333
No 197
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=84.06 E-value=1.2 Score=34.33 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
+++.|..++..|+.+|..|..|...|+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444443
No 198
>PRK03918 chromosome segregation protein; Provisional
Probab=83.98 E-value=12 Score=41.18 Aligned_cols=9 Identities=11% Similarity=0.383 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 019071 279 ELQARVETL 287 (346)
Q Consensus 279 eLE~rv~~L 287 (346)
+|+.++..|
T Consensus 204 ~l~~ei~~l 212 (880)
T PRK03918 204 EVLREINEI 212 (880)
T ss_pred HHHHHHHHH
Confidence 333333333
No 199
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=83.93 E-value=4.4 Score=40.93 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|..|++++.++..-..||..+..+++.++.-|..|...-.+|++.|.+
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888999999999999999999999999999988876
No 200
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.78 E-value=13 Score=38.82 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
++|.+-+..+..+..+|+.++..|..+++.|+.+...|+.+|..+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 445555566666778888888888888888888888888888888653
No 201
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.75 E-value=10 Score=42.48 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 261 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 261 ~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+-..=+--+.+-...++.|++.+..|+.||++|..++..+..+..+|+.++.-|+.+|....
T Consensus 657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333344456667777888888899999999999999999999999999999999999988554
No 202
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=83.66 E-value=1.2 Score=32.32 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 286 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.|-..|..|..++..|..++..|..||..||+++
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3445666677777777777777777777777665
No 203
>PRK14140 heat shock protein GrpE; Provisional
Probab=83.43 E-value=2.7 Score=39.16 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 312 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 312 (346)
|++|+.+++.|+.++..|+.++.++..+++-++...
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~ 74 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRI 74 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333
No 204
>PRK14148 heat shock protein GrpE; Provisional
Probab=83.38 E-value=3.5 Score=38.57 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
+.|+.+++.|+.+...|+.++.++..+++-++....+=++++........+.+|..
T Consensus 43 ~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLp 98 (195)
T PRK14148 43 ERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLP 98 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444444333333333333333333333333
No 205
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.37 E-value=5.4 Score=34.72 Aligned_cols=40 Identities=35% Similarity=0.478 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
.|..-+++|+.+++.|+-+...|.++-+.|+++++.|+.+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554444444443
No 206
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.31 E-value=16 Score=32.49 Aligned_cols=63 Identities=25% Similarity=0.387 Sum_probs=31.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 257 KRKQSNRESARRSRLRKQAECEELQ-------ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 257 RRk~~NRESARRSR~RKk~~leeLE-------~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+++..-+.+.+.-.+|++.++.|+ .+|..|+.+...+..++..++.+++.. +..++.+|..+
T Consensus 113 ~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f 182 (218)
T cd07596 113 ADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRF 182 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3444455555555556655555554 245555555555555555555444333 23344444444
No 207
>PF15058 Speriolin_N: Speriolin N terminus
Probab=83.30 E-value=2.7 Score=39.40 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.|.|..+++.|-.||++|++++..+ .||.+||.-|.+-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 4778889999999999999988655 4556665555443
No 208
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.27 E-value=6 Score=34.98 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
.++-.+|..|..++..|+.+...|..+|..++..
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554444443
No 209
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.03 E-value=26 Score=30.05 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
+.+--|.-.++|..+.+.|+.-+..|+.+...+.+.+..|..+...++..
T Consensus 24 slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 24 SLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444444444333
No 210
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=83.02 E-value=4.2 Score=33.62 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 295 RDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 295 ~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
..+|..|+.++..|..||..|+.+|..
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555444444443
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.99 E-value=7.7 Score=40.68 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCchhc
Q 019071 258 RKQSNRESARRSRLRKQA----ECEELQARVETLSNENRNLRDELQRLS----EECEKLTSENNSIKEDLSRLCGPEAVA 329 (346)
Q Consensus 258 Rk~~NRESARRSR~RKk~----~leeLE~rv~~Le~EN~~L~~el~~L~----~e~~~L~~EN~~Lr~~L~~L~g~~~~s 329 (346)
-.+.|-++++..=+||.+ .++.++.++..++.+|..|++....++ +..+.+..++..+.+++..|+ +.|+
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq--EQlr 445 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ--EQLR 445 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 344566677766666654 344555566666666666655443332 333334444444455555555 5666
Q ss_pred chhhcCCC
Q 019071 330 NLEQSNPT 337 (346)
Q Consensus 330 ~L~~~~~~ 337 (346)
+|.-.+++
T Consensus 446 Dlmf~le~ 453 (493)
T KOG0804|consen 446 DLMFFLEA 453 (493)
T ss_pred hHheehhh
Confidence 66655555
No 212
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.99 E-value=13 Score=36.98 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
++..|..++..+..++...+.++..++.+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 213
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.90 E-value=23 Score=34.88 Aligned_cols=55 Identities=15% Similarity=0.306 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
++..+.+++.++.+..+...++..+++.+...+....+|..+-.+|. ..|..+++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~--k~~~~~~s 256 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLS--KTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 44444555555555555555555555555555555555555555554 33444433
No 214
>PF14282 FlxA: FlxA-like protein
Probab=82.73 E-value=5.5 Score=33.46 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 278 EELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 278 eeLE~rv~~Le~----EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..|+.++..|.. .......++..|+.++..|..+...|..+.....
T Consensus 29 ~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 29 KQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555 2234456666666666666666666666665554
No 215
>PRK14160 heat shock protein GrpE; Provisional
Probab=82.59 E-value=4.4 Score=38.36 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
++.|+.++..|+.+...|+.++.+++.+++-++....+=++++........+.+|...+++
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 3444455555555555555555555555554444444444444555545556666555554
No 216
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=82.53 E-value=11 Score=42.39 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=58.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
++-.-.++.-++++.+-........+|..+|+.|..+-..+..+.+.+.+.++.|+.|...|..+++.|+.. ++++.+
T Consensus 445 ~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~--~~~~~q 522 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT--LSNLAQ 522 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 333445667788888888888888888888888888888777777777888888888888888888887743 444444
No 217
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=82.44 E-value=3 Score=35.91 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
.|+.+|..|.+++..|+.||.-||
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555665554
No 218
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=82.41 E-value=5 Score=34.11 Aligned_cols=40 Identities=23% Similarity=0.438 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
|...+..|+.++..+..+++.|+..+..+..+...|+.++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666666666666666666666666666666654
No 219
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=82.27 E-value=16 Score=30.61 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETL--SNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 274 k~~leeLE~rv~~L--e~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
..++..||.+++.| ..+...|+-++..++-++..|..+.+.+...+.-
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44455555555555 5555555555555555555555555555444433
No 220
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.22 E-value=10 Score=35.34 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+.+..|+.++..++.....|+.++..|+.+++.++..-..|..+......
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777777777777777777777666655443
No 221
>PRK09039 hypothetical protein; Validated
Probab=81.87 E-value=17 Score=36.39 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
|..|+.+.+.|+.++..|+.++..
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 222
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=81.81 E-value=17 Score=34.70 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 299 QRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 299 ~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
+..+++++-|+.-|+.|+++|+.+..+
T Consensus 231 kk~~eei~fLk~tN~qLKaQLegI~ap 257 (259)
T KOG4001|consen 231 KKMKEEIEFLKETNRQLKAQLEGILAP 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 344556666777777777777766544
No 223
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=81.78 E-value=20 Score=34.98 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 251 RELKRQKRKQSNRESARRSRLRKQAECE---------ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 251 ~e~KR~RRk~~NRESARRSR~RKk~~le---------eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.++.+.++.+...-+.+. ..|++.+. .++..+..+..+|..+..++..-+++++.|+.++..|++++..
T Consensus 141 del~e~~~~el~~l~~~~--q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 141 DELNEMRQMELASLSRKI--QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655554433 22332222 2444566677899999999999999999999999999999999
Q ss_pred hcC
Q 019071 322 LCG 324 (346)
Q Consensus 322 L~g 324 (346)
|+.
T Consensus 219 L~~ 221 (258)
T PF15397_consen 219 LQA 221 (258)
T ss_pred HHH
Confidence 974
No 224
>PRK14127 cell division protein GpsB; Provisional
Probab=81.77 E-value=3.6 Score=35.20 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
+.|+++...++.|..||..|+.++..|++++..++.+....
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34555555566666666666666666655555555544433
No 225
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.75 E-value=17 Score=29.86 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|..++..|++++..|+.+...+.++|..
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 226
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.73 E-value=6.3 Score=42.56 Aligned_cols=44 Identities=34% Similarity=0.575 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
|++|+.+++.++.+...|..++..+.++++.++.++.+|.+++.
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555554444433
No 227
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.69 E-value=22 Score=34.06 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
...+..|+....+++.+....++.+..|..|...|+.++..++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445544444444444444444444444444444444443
No 228
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=81.66 E-value=2.3 Score=35.31 Aligned_cols=31 Identities=39% Similarity=0.579 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
|+.+++.|..+++.++.+|..|..+|..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666666666655543
No 229
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.64 E-value=13 Score=38.95 Aligned_cols=55 Identities=25% Similarity=0.222 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 270 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
+.|+..++..+-.|++.|+.||. ..+++.|..++..|+.....|+..+.+|.+.+
T Consensus 280 e~rrhrEil~k~eReasle~Enl--qmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 280 EERRHREILIKKEREASLEKENL--QMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45666666666677777766664 45567788888888888888888888887644
No 230
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=81.19 E-value=4.8 Score=35.48 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
.+...|..++.|+.+...=..+|..|+++++.+...|..|..+
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555555555555566666666666666666666544
No 231
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=81.04 E-value=15 Score=33.22 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 251 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 251 ~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
+-.+..+++++.|..|+-+-+.|-.++.+|..++...+.....+..+|..|...+.
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667788999999999999999999998887777766666666666554443
No 232
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=80.98 E-value=0.49 Score=45.13 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
.-|..|||+..++..|+.-...|..++++|++++++|..||.+|
T Consensus 119 DdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 119 DDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp --------------------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777
No 233
>PRK14161 heat shock protein GrpE; Provisional
Probab=80.66 E-value=4.5 Score=37.20 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
++.|+.+..+|+.++.++..+++-++
T Consensus 28 i~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 28 ITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 234
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.62 E-value=28 Score=28.48 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLS-----NENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 275 ~~leeLE~rv~~Le-----~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.++..||.+++.-- .....|..++..|+.+...|..+|..|+.+|.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566665554322 24556788889999999999999999998875
No 235
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=80.51 E-value=6.8 Score=40.01 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
|+.+++.|+.++..|..++..+++++..|+.|+..|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555556666666666666666666666777766653
No 236
>PRK14153 heat shock protein GrpE; Provisional
Probab=80.23 E-value=3.7 Score=38.38 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQ 299 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~ 299 (346)
++++|+.++..+.++...++++..
T Consensus 48 e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 48 EIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 237
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=80.20 E-value=1.4 Score=40.23 Aligned_cols=30 Identities=43% Similarity=0.647 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
|-+.|+.++++|+.|+..|+.|+ .+++++.
T Consensus 25 EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 34445566666666666666666 5555544
No 238
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=79.92 E-value=6.3 Score=33.11 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
..+|..++...+.|-.-|++.+..|..+++.|+.|...++.+...+
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567777777777777777777666666666666666666554433
No 239
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=79.86 E-value=9 Score=31.14 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
-|+.|-.||+..+.||..|..+.+.|+.-+..|...
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555556666666665555555555443
No 240
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=79.85 E-value=3.1 Score=36.17 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
|..-+|+|+.++..|+-||..|+++|..--
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345689999999999999999998886543
No 241
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=79.82 E-value=19 Score=30.08 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 295 RDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 295 ~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
..+|..|..++..|..++..|...|..
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 242
>PRK14145 heat shock protein GrpE; Provisional
Probab=79.63 E-value=6 Score=37.07 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
..|+.+...|+.++.++..+++-++
T Consensus 55 ~~le~e~~el~d~~lR~~AEfeN~r 79 (196)
T PRK14145 55 QQKEVEAQEYLDIAQRLKAEFENYR 79 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 243
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.54 E-value=19 Score=31.63 Aligned_cols=50 Identities=10% Similarity=0.341 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.++++.|..++++..+-....++++..++..+..+..+...+...+..|.
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666666666666555555554
No 244
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.52 E-value=17 Score=41.57 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++..+.+.|+-+++.|+.+...+..++..+..++..|..|+..|+..+....
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444556666666666666666666666666666666666666666665554
No 245
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=79.36 E-value=9.6 Score=35.73 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 295 RDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 295 ~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.++|..|....+.|..||.+||+-|--|-
T Consensus 114 ~~KL~eLE~kq~~L~rEN~eLKElcl~LD 142 (195)
T PF10226_consen 114 QQKLKELEDKQEELIRENLELKELCLYLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 44566666666777777777777776663
No 246
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=79.22 E-value=1.9 Score=31.30 Aligned_cols=43 Identities=37% Similarity=0.499 Sum_probs=11.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 255 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 255 R~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el 298 (346)
++++..+||+=|+.--... ..|.+|+.++..|..||..|+.++
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3566777777776654443 357777777777777777777665
No 247
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=79.14 E-value=12 Score=42.15 Aligned_cols=73 Identities=32% Similarity=0.448 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHH----------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 263 RESARRSRLRKQA--ECEELQARVE----------------TL-SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 263 RESARRSR~RKk~--~leeLE~rv~----------------~L-e~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|++||+.+.+++- ++.+|+.+++ .| +.|+..|...++.+.+++..|..+...|..+|..|.
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777776653 3444444443 11 367777888899999999999999999999999999
Q ss_pred CCchhcchhhcC
Q 019071 324 GPEAVANLEQSN 335 (346)
Q Consensus 324 g~~~~s~L~~~~ 335 (346)
+.+.+++|++.-
T Consensus 809 ~g~~~a~lr~~~ 820 (984)
T COG4717 809 GGGTVAELRQRR 820 (984)
T ss_pred cCChHHHHHHHH
Confidence 999999988753
No 248
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.04 E-value=27 Score=33.64 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+..++.|+..++.++..|+.++..|+..|..|..+|..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 333444444444444444444444444454444444444
No 249
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.88 E-value=17 Score=42.52 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019071 265 SARRSRLRKQAECEELQA 282 (346)
Q Consensus 265 SARRSR~RKk~~leeLE~ 282 (346)
..+..+.+++..+.+|+.
T Consensus 847 ~l~~e~e~~~~eI~~Lq~ 864 (1311)
T TIGR00606 847 LNRKLIQDQQEQIQHLKS 864 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 250
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.78 E-value=4.8 Score=29.19 Aligned_cols=25 Identities=48% Similarity=0.765 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
++-|.+-.+.|..||..|+.++..|
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666655554
No 251
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=78.74 E-value=7.2 Score=30.54 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
....++..++.+++.|+.+|..|+.++..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566677777777777777777766654
No 252
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=78.66 E-value=14 Score=30.31 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+..|...+..|..-...|.++...|..++..|...|++.|.++.+..
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444555666666666665543
No 253
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=78.58 E-value=22 Score=34.72 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAEC 277 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~l 277 (346)
|++.|-.-|++..+.=--+|.+|-|...
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~a 38 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSA 38 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 254
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=78.51 E-value=17 Score=29.44 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
+.|..-...|+.+|....+-...|..++..++
T Consensus 22 ~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 22 DRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444443
No 255
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=78.50 E-value=11 Score=32.05 Aligned_cols=52 Identities=21% Similarity=0.200 Sum_probs=26.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 259 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 259 k~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
+-+||.++|..++-...+-..| .-+.|++.|..+++.+.++...+..+..++
T Consensus 55 msQNRq~~~dr~ra~~D~~inl-----~ae~ei~~l~~~l~~l~~~~~~~~~~~~~~ 106 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINL-----KAEQEIERLHRKLDALREKLGELLERDQER 106 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4467777664332222222222 234456666666666666665555555443
No 256
>PRK14157 heat shock protein GrpE; Provisional
Probab=78.40 E-value=5.5 Score=38.17 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 019071 272 RKQAECEELQA 282 (346)
Q Consensus 272 RKk~~leeLE~ 282 (346)
|-+++.+-+.+
T Consensus 102 R~~AEfeNyRK 112 (227)
T PRK14157 102 RERAEFINYRN 112 (227)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 257
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=78.16 E-value=18 Score=40.17 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 283 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 283 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.+.|..+...+++++..++...++|...+..|+.++.+|+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677778888888888888888999999999999999888
No 258
>PHA03162 hypothetical protein; Provisional
Probab=78.10 E-value=1.6 Score=38.58 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQ 299 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~ 299 (346)
+++.-+|+|+.++..|+-||..|+++|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999999999999983
No 259
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=78.09 E-value=28 Score=29.74 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHH
Q 019071 246 WIQDERELKRQKRKQSNRESARR 268 (346)
Q Consensus 246 ~~~DE~e~KR~RRk~~NRESARR 268 (346)
-+.+||+.+..+|..+||||-+.
T Consensus 47 ~MKEER~K~E~~~q~r~rES~~E 69 (121)
T PF10669_consen 47 RMKEERSKKEEKRQKRNRESKRE 69 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Confidence 35678888889999999998653
No 260
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=77.90 E-value=22 Score=33.36 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 312 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 312 (346)
+-.++..++..|+.|...++.+|..|+.++..|..++
T Consensus 148 ~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 148 RQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555555555555555554443
No 261
>PF14645 Chibby: Chibby family
Probab=77.83 E-value=8.8 Score=33.03 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.|..+...|+.||.-|+-+++.|-.=+.....|..-+..+|
T Consensus 75 ~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 75 RLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445556667777777777666555555555555444443
No 262
>PRK02224 chromosome segregation protein; Provisional
Probab=77.75 E-value=25 Score=38.75 Aligned_cols=12 Identities=42% Similarity=0.537 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 019071 276 ECEELQARVETL 287 (346)
Q Consensus 276 ~leeLE~rv~~L 287 (346)
++.+|+.+++.|
T Consensus 510 ~l~~l~~~~~~l 521 (880)
T PRK02224 510 RIERLEERREDL 521 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 263
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.72 E-value=22 Score=42.44 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=9.1
Q ss_pred HHHHHHhHHHHHHHHHH
Q 019071 256 QKRKQSNRESARRSRLR 272 (346)
Q Consensus 256 ~RRk~~NRESARRSR~R 272 (346)
++...+.++.|++.+.-
T Consensus 323 L~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 323 ESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445556666665543
No 264
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.68 E-value=24 Score=41.63 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 330 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~ 330 (346)
..++++..++..++.+...++.++..+++++..|+.+...|+.++..|.+.+.+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~ 331 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQD 331 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45677788888888888888888889999899999999999999999887766543
No 265
>PRK10698 phage shock protein PspA; Provisional
Probab=77.47 E-value=30 Score=32.65 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 329 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s 329 (346)
+.+..|+.+++..+.....|+..+..|+.++..++..-..|..+...-.....|.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~ 153 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVR 153 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777777777777777777777777766555444443
No 266
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=77.42 E-value=12 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
++++.++..|+..+..+..++..+.+++..+..-+..|.
T Consensus 16 ~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 16 DNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555555555555444443
No 267
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.15 E-value=16 Score=39.70 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 272 RKQAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~---el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+.+++.+||.+++.++.+.....+ .+..-+..+....++|..||++|..|+
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq 173 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQ 173 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHH
Confidence 6677788888777777665332222 222222233344455555555555554
No 268
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=77.15 E-value=14 Score=31.17 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 263 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 263 RESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
||.|+.-+==++.+.|.|+.--+.|+.|...-+++|+.|.++
T Consensus 57 rE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 57 REAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444544444344444444443344444444445555554443
No 269
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=77.09 E-value=12 Score=34.12 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=8.3
Q ss_pred HHHHHHHhcCCchhcchh
Q 019071 315 IKEDLSRLCGPEAVANLE 332 (346)
Q Consensus 315 Lr~~L~~L~g~~~~s~L~ 332 (346)
+..+|..|+.....+.++
T Consensus 107 i~~Kl~dmrnS~tFKSfE 124 (162)
T PF04201_consen 107 ISRKLGDMRNSPTFKSFE 124 (162)
T ss_pred HHHHHHHHhcchHHHhHH
Confidence 444455555444444443
No 270
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.02 E-value=19 Score=40.96 Aligned_cols=48 Identities=33% Similarity=0.485 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhcC
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEE---------------CEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e---------------~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+.|+.+|+.|+..+.+|.-.++.|+.| +.+|+.+|.+||+-|.+|+.
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666777777777665 34677888888888877763
No 271
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.94 E-value=20 Score=39.82 Aligned_cols=59 Identities=17% Similarity=0.356 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcc
Q 019071 270 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 330 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~ 330 (346)
|+--.+..+.|+++++.+.....+++..-++|...++.|+.|..+|+. ..++..+.+++
T Consensus 211 rmaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~--~~~~~~~~mrd 269 (916)
T KOG0249|consen 211 RMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR--SSLEKEQELRD 269 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHhhhhhhcc
Confidence 333445556677777777777777777777777777777777777774 33433344443
No 272
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=76.90 E-value=16 Score=29.17 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEEC--------------EKLTSENNSIKEDLSRL 322 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~--------------~~L~~EN~~Lr~~L~~L 322 (346)
+..|+.+-+.+.-|+-.|++++..+++|+ ..|..|..++++.|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 45566666666666666666666666663 45566666666666554
No 273
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=76.88 E-value=11 Score=41.20 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 019071 303 EECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 303 ~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
..++.|+.||..|+++|..|...
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 55778889999999999888654
No 274
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=76.82 E-value=13 Score=34.33 Aligned_cols=29 Identities=31% Similarity=0.635 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
|..+++.....|..|..+|..|..++..|
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555553
No 275
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=76.80 E-value=43 Score=29.71 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 266 ARRSRLRKQAECEELQARVETLSNENRNLR-------DELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 266 ARRSR~RKk~~leeLE~rv~~Le~EN~~L~-------~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+=..|.++..+++.++..+...+.+...|+ .++..|+.++..++.+...++.++..+
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666555553 355556666666665555555555544
No 276
>PRK11546 zraP zinc resistance protein; Provisional
Probab=76.57 E-value=9.6 Score=34.15 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNL 294 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L 294 (346)
.+=....++|.+++-..+.|...|
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544444
No 277
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=76.53 E-value=44 Score=31.34 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
...|-.-...+..||..|+.++..|.+++..|+..+..|..+-..|.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455667778888888888888888888888888887766665
No 278
>PHA03155 hypothetical protein; Provisional
Probab=76.51 E-value=3.3 Score=35.81 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQR 300 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~ 300 (346)
-+|+|+.++..|+-||..|++++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998855
No 279
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=76.45 E-value=4.4 Score=37.99 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|+.+...|+.++..|+.++..|..|+.+|+.++..+.
T Consensus 110 lE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~ 146 (198)
T KOG0483|consen 110 LEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLK 146 (198)
T ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 4444444555555555555555555555555555443
No 280
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=76.44 E-value=5.7 Score=42.90 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+|-.+|++|.-|+.-|+.++...+.-..+|+..+.+|.++|+.+.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888887777777777777777777777776665
No 281
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=76.42 E-value=12 Score=41.67 Aligned_cols=67 Identities=34% Similarity=0.504 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHH
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC----------------------------EKLTSENNSIKEDLS 320 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~----------------------------~~L~~EN~~Lr~~L~ 320 (346)
++-+-.+++..|..+++.++.||..|+-++..|.+++ ..|+.|-++||.-++
T Consensus 128 ~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 128 EKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556678889999999999999988888777663 356666666666554
Q ss_pred H-hcCCchhcchhhcC
Q 019071 321 R-LCGPEAVANLEQSN 335 (346)
Q Consensus 321 ~-L~g~~~~s~L~~~~ 335 (346)
+ |-||..|..++...
T Consensus 208 k~lpgpaa~a~mk~ev 223 (769)
T PF05911_consen 208 KKLPGPAALAQMKNEV 223 (769)
T ss_pred ccCCChHHHHHhHHHH
Confidence 4 66777766655443
No 282
>PRK14160 heat shock protein GrpE; Provisional
Probab=76.37 E-value=11 Score=35.61 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
..|+.++..|+.++..|..++..|+..+..+.++...+|.+
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 283
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.18 E-value=28 Score=37.58 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+..|+.+++.++.+...+..++..+++++..++.+...|+.++.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433
No 284
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.17 E-value=27 Score=36.53 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchh
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 332 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~ 332 (346)
+..|.+-...+..++..|..++..|..+...|+++|..|+ ..|..|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ--NELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 3456666666777888888888888888888888888876 4444443
No 285
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=76.17 E-value=29 Score=30.34 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDEL-QRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el-~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.++.++...+..|+.+++.....+ ..+.++.+........+..+|..|
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 445555555666665555555444 333334444444445555544443
No 286
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.13 E-value=22 Score=35.32 Aligned_cols=75 Identities=31% Similarity=0.524 Sum_probs=0.0
Q ss_pred hhhhH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 246 WIQDE-------RELKRQKRKQSNRESARRSRLRKQAECEELQA-------RVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 246 ~~~DE-------~e~KR~RRk~~NRESARRSR~RKk~~leeLE~-------rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
|..|| +.+.+..-+..+-+--++-|.-||=.|+.||. +|+.-+.+...|+.++..|.+.|+.|+.-
T Consensus 3 Wa~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 3 WAVEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred chHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 019071 312 NNSIKEDLS 320 (346)
Q Consensus 312 N~~Lr~~L~ 320 (346)
+..|.-+|.
T Consensus 83 rqKlshdlq 91 (307)
T PF10481_consen 83 RQKLSHDLQ 91 (307)
T ss_pred HHHhhHHHh
No 287
>PRK14144 heat shock protein GrpE; Provisional
Probab=76.07 E-value=7.9 Score=36.39 Aligned_cols=14 Identities=14% Similarity=-0.118 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENR 292 (346)
Q Consensus 279 eLE~rv~~Le~EN~ 292 (346)
+|..++..+.++..
T Consensus 63 elkdk~lR~~Aefe 76 (199)
T PRK14144 63 ENWEKSVRALAELE 76 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 288
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=76.05 E-value=17 Score=37.93 Aligned_cols=48 Identities=29% Similarity=0.303 Sum_probs=27.2
Q ss_pred HHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 259 KQSNRESARRSRLR-----KQAECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 259 k~~NRESARRSR~R-----Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
+..-|.+|++--+| =++++.++|.++..|+.||..|..+.-.+...++
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~ 79 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEK 79 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544443 2455666677777777777777666555444433
No 289
>PRK12705 hypothetical protein; Provisional
Probab=75.89 E-value=39 Score=35.99 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|+.+.+.|+.....|..+-..|..+...|......+..+|+.+.
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia 136 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVA 136 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444443444444444443
No 290
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=75.81 E-value=26 Score=35.35 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAE 276 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~ 276 (346)
+++|+++++|...-..=+||..+
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE 144 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLE 144 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777666555555433
No 291
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=75.75 E-value=5.8 Score=34.25 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
+++|-|..++..|+..|..|++|...|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554443
No 292
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.73 E-value=11 Score=37.42 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
-+|+-|..+++.|+.....|+.++.....+++.++.....|+.++..|+..
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777788888888888888887743
No 293
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.70 E-value=34 Score=31.58 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 270 RLRKQAECEELQARVETLSNENR 292 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~ 292 (346)
|.+..+++++|+.+++.|+.+..
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 294
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=75.69 E-value=10 Score=31.85 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..|+.+.+-...+...|++.+..|..+|..|+.+|.++.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666667777777777777777665
No 295
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=75.66 E-value=9.8 Score=38.71 Aligned_cols=53 Identities=30% Similarity=0.555 Sum_probs=36.4
Q ss_pred CCCCchhhhhhhhcCCCCCC--CCCCCCCCC--CCCCCCccccCCCCCCCCCCCCCCCcc
Q 019071 26 PSYADWSSSMQAFYGAGATP--PPFFASTVA--SPTPHPYLWGSQHPLMPPYGTPVPYQA 81 (346)
Q Consensus 26 ~~~pdW~~smQAYy~~~~~p--p~y~~s~va--~~~phPYmWg~q~~m~ppygtp~PY~a 81 (346)
|.-.|-+ .+|.-|-+..+| .+||.-.-+ +.-|||-+|-. -|+|+||-.+||++
T Consensus 72 ~~p~dis-~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~wp~--y~~pt~~~~~p~p~ 128 (421)
T KOG3248|consen 72 PLPADIS-PKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGWPV--YPIPTFGFRHPYPG 128 (421)
T ss_pred CCccccc-ccCCCCCCCCCccccccccCCccccccCCCccCCcc--ccCCCCCCCCCCch
Confidence 4557888 588776655443 467654333 46799999922 35678999999996
No 296
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.58 E-value=54 Score=31.43 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
+-+..||.-+..++.++...+..+.+|.+++..|+.+..+++.+
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888888888888888888777
No 297
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.50 E-value=46 Score=32.02 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 265 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 265 SARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
+++.--.+-+..+..|+.++..|+..|..|..+|..|.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 44444445555566777777777777766666665553
No 298
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=75.49 E-value=50 Score=29.01 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcC
Q 019071 270 RLRKQAECEELQARVETLSNENRNLRDEL-QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 335 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~L~~el-~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~ 335 (346)
+....+.++.+..++..|+..+..|..+. ..++.+...|..=...|-.++.+++ ..|+.|.+..
T Consensus 50 ~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk--~rLk~LG~eV 114 (136)
T PF04871_consen 50 EQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYK--ERLKELGEEV 114 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHH--HHHHHcCCCc
Confidence 34444456777777777877777777665 6677777777777777777777776 7777777766
No 299
>PRK15396 murein lipoprotein; Provisional
Probab=75.26 E-value=20 Score=28.98 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.++.|..+|..|..+..+|...+..++...+....|-.+--++|..
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777666666655555554444443
No 300
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.20 E-value=9.1 Score=38.66 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
+.+|+.+++.|+.++..|..+++.++.++..|+.++..|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567788888888888888888888888888888887764
No 301
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.07 E-value=19 Score=28.88 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcC
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 335 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~ 335 (346)
.+||+|+..|+.....-.+-|+.|...+...+.....++.+|..|. +.+.++..++
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~--~kl~~~~~~~ 59 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT--EKLKDLQPSA 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence 4677888888877777777777777777777777777777777776 5555555544
No 302
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=74.95 E-value=22 Score=39.63 Aligned_cols=63 Identities=29% Similarity=0.345 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchh
Q 019071 274 QAECEELQARVETLSNENRNLRD---------------------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 332 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~---------------------el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~ 332 (346)
..++.+|..++..+..||..|.. ++..|...++.++.||..|+-+|..+...-.|++.+
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E 170 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEE 170 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777778788888877655 556777888888899999998888887777777776
Q ss_pred hcCC
Q 019071 333 QSNP 336 (346)
Q Consensus 333 ~~~~ 336 (346)
....
T Consensus 171 ~~~~ 174 (769)
T PF05911_consen 171 REYS 174 (769)
T ss_pred HHHh
Confidence 6544
No 303
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=74.90 E-value=30 Score=36.52 Aligned_cols=77 Identities=29% Similarity=0.331 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHH--------HHHHHHH---HHHHHHHHHHHHHHHHHH---------------------
Q 019071 248 QDERELKRQKRKQSNRESARRSR--------LRKQAEC---EELQARVETLSNENRNLR--------------------- 295 (346)
Q Consensus 248 ~DE~e~KR~RRk~~NRESARRSR--------~RKk~~l---eeLE~rv~~Le~EN~~L~--------------------- 295 (346)
+-|.-.+|+||.+-.|.++=+-+ .|-|.++ -.|+.-...|+.+|++|+
T Consensus 48 qkEel~rr~rr~e~er~slm~~~g~l~ndvnrrlQ~hl~eir~lK~~nqKlq~~nqElrdL~cfldddrqkgrk~arewq 127 (513)
T KOG3819|consen 48 QKEELQRRLRRAEAERVSLMLAHGGLMNDVNRRLQQHLGEIRGLKDANQKLQQDNQELRDLCCFLDDDRQKGRKLAREWQ 127 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhccccchHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHH
Confidence 45566677777777777764432 2333333 344555556666666663
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 296 ------------------DELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 296 ------------------~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+++..|+.+.+.|+.||-+|++-|....+
T Consensus 128 rfgr~tS~~~~~eva~~~qKl~~LE~kqe~l~renlelkelc~~~~~ 174 (513)
T KOG3819|consen 128 RFGRQTSGAMLPEVAGYQQKLYELENKQEELLRENLELKELCHSRLG 174 (513)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccC
Confidence 36777888888888999999988886333
No 304
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.82 E-value=28 Score=37.90 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
+..+|+.+++.|+.++..|+.++..++
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544444443
No 305
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=74.45 E-value=13 Score=31.77 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
|..++..++.+++.|..+|..|++++..|...
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444444444444444444444444433
No 306
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.11 E-value=22 Score=32.70 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++.|+..+..+......|+..+..|+.++..++.+-..|+.+.....
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555544433
No 307
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=74.04 E-value=24 Score=36.77 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
=+.++.+|+.++..++.+..+....+..++..+..+......|
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 3444555555555555544444444444444444443333333
No 308
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=73.77 E-value=20 Score=35.25 Aligned_cols=19 Identities=37% Similarity=0.417 Sum_probs=10.4
Q ss_pred HHHHHhHH-HHHHHHHHHHH
Q 019071 257 KRKQSNRE-SARRSRLRKQA 275 (346)
Q Consensus 257 RRk~~NRE-SARRSR~RKk~ 275 (346)
-.-++||| +-+.+|.||+.
T Consensus 130 LK~IR~~E~sl~p~R~~r~~ 149 (271)
T PF13805_consen 130 LKSIRNREESLQPSRDRRRK 149 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhHH
Confidence 34566777 44555555543
No 309
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=73.64 E-value=12 Score=33.53 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019071 270 RLRKQAECEELQARVETLSN---ENRNLRDELQRLSEECE 306 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~---EN~~L~~el~~L~~e~~ 306 (346)
|.--+..|.+...+++.|+. .|..|+.+|..|+.++.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33344445555555555555 55555555555555554
No 310
>PF13514 AAA_27: AAA domain
Probab=73.55 E-value=36 Score=39.13 Aligned_cols=50 Identities=36% Similarity=0.555 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhc
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 334 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~ 334 (346)
..|+.+...|..++..|..++..|..+...++.+|..|.+.+.+..+.+.
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e 941 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQE 941 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 55677778888888888888888888888899999999888777766554
No 311
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=73.40 E-value=32 Score=37.50 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
+++++..+++.|+.+...-+.++..|+.++++.+.+.++|++
T Consensus 108 eI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 108 EIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344444555555555544445555555555554444444443
No 312
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=73.33 E-value=30 Score=39.94 Aligned_cols=40 Identities=33% Similarity=0.508 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
+++..++..|+...+.|+.++..+..++..++.+...++.
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 313
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=73.32 E-value=35 Score=33.89 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHH
Q 019071 247 IQDERELKRQKRKQSNRESARRSRL 271 (346)
Q Consensus 247 ~~DE~e~KR~RRk~~NRESARRSR~ 271 (346)
+.+|+|+...|+.+..=+..|..-+
T Consensus 149 V~EEeEL~~lr~~q~~fe~~R~aEl 173 (291)
T PF06098_consen 149 VMEEEELAALRRQQRAFEELRNAEL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888877666444443333
No 314
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.22 E-value=74 Score=30.36 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.|+..+..++.+...+...+..|+..+..|+.....|+.++..+
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 315
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=73.22 E-value=19 Score=35.92 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
++++|+.+++.++.+...+..++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444443
No 316
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=73.17 E-value=18 Score=30.52 Aligned_cols=40 Identities=20% Similarity=0.442 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.++...-+-|+.|+.....|+++|+.|+.-...|...+.+
T Consensus 57 ~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 57 QQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566677788888888888888888888888877654
No 317
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=73.12 E-value=29 Score=35.73 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+|+.++..|++++..|+.+...|.+++..
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 318
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.08 E-value=16 Score=36.30 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 263 RESARRSRLRKQAECEELQARVETLSN 289 (346)
Q Consensus 263 RESARRSR~RKk~~leeLE~rv~~Le~ 289 (346)
+|+.+|-.. |..+|++|..++..++.
T Consensus 78 kes~~~l~d-RetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 78 KESENRLHD-RETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 345444444 34456666665554443
No 319
>PF14282 FlxA: FlxA-like protein
Probab=73.07 E-value=16 Score=30.59 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLR 295 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~ 295 (346)
.|++.+..|+.++..|+.+...|.
T Consensus 48 ~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 48 QKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 320
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=73.07 E-value=16 Score=39.77 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
++|+.+|+.|+.++..|..+|+.+..++...+
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e 113 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQE 113 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 321
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=72.99 E-value=33 Score=29.70 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=19.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 260 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 260 ~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
..|+.-|++. +-++.++++|..++..+-.+...|..++..+..+...
T Consensus 41 ~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 41 AENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544433 2223444444444444444444444444444444333
No 322
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=72.99 E-value=17 Score=32.51 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
|...|..|.+.+..|..+++.+.
T Consensus 113 l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 113 LQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444443
No 323
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.76 E-value=31 Score=37.40 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 019071 284 VETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~---e~~~L~~EN~~Lr~~L~~L 322 (346)
...|+.||-.|++++..|+. +++.|+-|+.+|.++++-|
T Consensus 172 YSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ell 213 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELL 213 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34556666666666666543 4566666666666655544
No 324
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=72.60 E-value=19 Score=31.24 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+...|+.++..+..++..|..+-..+..++..
T Consensus 56 ~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 56 ELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444333333
No 325
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=72.60 E-value=21 Score=31.08 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
+++|-.+-..|+.++..|..-|..|.
T Consensus 37 leel~~knqqLreQqk~L~e~i~~LE 62 (120)
T PF10482_consen 37 LEELFSKNQQLREQQKTLHENIKVLE 62 (120)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 326
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=72.56 E-value=53 Score=29.17 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 289 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 289 ~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
.+.......+..-++.++.|..||..||..-..- =|++|..|++
T Consensus 68 ~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~-LPd~V~RL~~ 111 (135)
T TIGR03495 68 QQLAQARALLAQREQRIERLKRENEDLRRWADTP-LPDDVIRLRQ 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCC-CcHHHHHHhc
Confidence 3333344444455666777777777777665443 2666666665
No 327
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=72.44 E-value=25 Score=30.79 Aligned_cols=6 Identities=50% Similarity=0.606 Sum_probs=3.1
Q ss_pred hhhHHH
Q 019071 247 IQDERE 252 (346)
Q Consensus 247 ~~DE~e 252 (346)
+.||.|
T Consensus 72 LLDElE 77 (139)
T PF13935_consen 72 LLDELE 77 (139)
T ss_pred HHHHHH
Confidence 456653
No 328
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.43 E-value=32 Score=35.44 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
|..++..|++++..|+.+...|.+++
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 329
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=72.36 E-value=32 Score=31.89 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
+|++++++.+.+.+.++.+..+|+.+|..++
T Consensus 143 ~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 143 IRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666555555555555555443
No 330
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=72.14 E-value=15 Score=35.05 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQ---RLSEECEKLTS 310 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~---~L~~e~~~L~~ 310 (346)
.+.+|.++.+.|++||..|+.++. .|++|++.|+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444 33444444443
No 331
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.14 E-value=12 Score=42.87 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
.+|++|++.+-.|+.||..|..+|..|..
T Consensus 530 ~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 530 NKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544
No 332
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=72.05 E-value=19 Score=28.57 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~ 302 (346)
|+.....-+.+|..|..++..|.
T Consensus 33 Lq~~~~~t~~~~a~L~~qv~~Ls 55 (70)
T PF04899_consen 33 LQHMFEQTSQENAALSEQVNNLS 55 (70)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 333
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.03 E-value=12 Score=30.00 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..|+.+...|..++..|+.+...|..+...|+..|..+-
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555555655555443
No 334
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=72.02 E-value=32 Score=30.85 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENR 292 (346)
Q Consensus 277 leeLE~rv~~Le~EN~ 292 (346)
+++|+.+++.|+.+|.
T Consensus 53 ~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 53 NEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444443333
No 335
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=72.02 E-value=31 Score=33.99 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC--EKLTSENNSIKEDLSRL 322 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~--~~L~~EN~~Lr~~L~~L 322 (346)
|..|+++.++...-+.+.-.-..|..||+++..++.++.....+|..++++. +.+..+-..|.+..+++
T Consensus 144 R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~ 214 (271)
T PF13805_consen 144 RDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQ 214 (271)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555543333322334788899999999998888888888887764 34555555566555443
No 336
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=71.90 E-value=31 Score=39.92 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=7.5
Q ss_pred CCCchhhhhhhhcC
Q 019071 27 SYADWSSSMQAFYG 40 (346)
Q Consensus 27 ~~pdW~~smQAYy~ 40 (346)
|-..|..++.+-=|
T Consensus 527 v~~~y~~Aie~alG 540 (1163)
T COG1196 527 VKEKYETALEAALG 540 (1163)
T ss_pred cChHHHHHHHHHcc
Confidence 33466666665544
No 337
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.80 E-value=52 Score=30.26 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhc
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 334 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~ 334 (346)
+++.++..|+.....+...+..|+..+..|+.....|+.+...|............
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~ 150 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK 150 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666677777777776666666655544444333
No 338
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.76 E-value=29 Score=34.89 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
++..|..-+...++++..|..|...|+++|.+++|.
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 334455666777888888888888888888888753
No 339
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.46 E-value=39 Score=38.96 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN-~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|..++.|+.+|..++.+- ..|..++..+..+++.|..|+..|..++..|.
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666655544 55666666666666666666666666666665
No 340
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=71.44 E-value=36 Score=27.55 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+|..++...+.|+..|..-+..|+.++.....-|..|..++..++
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666655554
No 341
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=71.29 E-value=41 Score=33.76 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019071 267 RRSRLRKQAECEELQARVET 286 (346)
Q Consensus 267 RRSR~RKk~~leeLE~rv~~ 286 (346)
+|.-+|++.++++|++....
T Consensus 354 qraeekeq~eaee~~ra~kr 373 (445)
T KOG2891|consen 354 QRAEEKEQKEAEELERARKR 373 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 33444666667777654443
No 342
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=71.25 E-value=14 Score=31.03 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
+++.+.-.|...|.+|..++..|.
T Consensus 21 ~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 21 DVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444333
No 343
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=71.22 E-value=13 Score=37.72 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019071 287 LSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L 308 (346)
|+.||..|++|++.|+.+.++|
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 344
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=71.14 E-value=26 Score=32.42 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=4.6
Q ss_pred CCccccccc
Q 019071 202 PATNLNIGM 210 (346)
Q Consensus 202 p~~~Lnigm 210 (346)
|..-+|+|+
T Consensus 90 ~~s~VnDGI 98 (176)
T PF12999_consen 90 PSSRVNDGI 98 (176)
T ss_pred ehhhhcCCc
Confidence 444455554
No 345
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=71.10 E-value=14 Score=28.40 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
+++|+.++..|+.|...|+.++..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777666666665443
No 346
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=71.01 E-value=27 Score=30.54 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=51.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 256 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 256 ~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
-.|.++.|...---|.-=|++|..||-++..++.-+..|..+|+-|+..+.+.+..+..|+.
T Consensus 13 w~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 13 WHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34566677777777777788999999999999999999999999999988888888777653
No 347
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=71.01 E-value=34 Score=26.18 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
..|+.-|..|.++. .|..+++.|+.||.+|+.-|.+
T Consensus 23 ~~l~rY~~vL~~R~-~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 23 NFLKRYNKVLLDRA-ALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666665 4456678999999999988765
No 348
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=70.83 E-value=35 Score=41.86 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=60.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 259 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 259 k~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
.+.-.+.+++++.-=++.+..++++++.|+.|+.+|+..+..+......++.|..++.++|..+...
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3346789999999999999999999999999999999999999999999999999999999997754
No 349
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.78 E-value=44 Score=37.05 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
+++.+|+.+++.|+..-..|.++++.+.+..+.|...
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444555544444444444433
No 350
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.73 E-value=41 Score=38.77 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQ 299 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~ 299 (346)
+...|++|+.+++.++.+...|...+.
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555544444444
No 351
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=70.72 E-value=6.6 Score=39.39 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhc
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 334 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~ 334 (346)
|+.|+.+|.+|..+|+.-++|+..|..-|++--.++++|. +.|..|+-.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLs--qTi~ELEEa 50 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLS--QTIRELEEA 50 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4566677777777777777777666666655555555554 445555443
No 352
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=70.71 E-value=20 Score=28.56 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSEN 312 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 312 (346)
|...|..|..|+.+|..++..+++++..++.+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777666655
No 353
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=70.68 E-value=18 Score=33.56 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.+|+.+++.|..+++.++.+...|..+|
T Consensus 109 ~elr~~~~~l~~~i~~~~~~~~~L~~~l 136 (181)
T KOG3335|consen 109 MELRLKVEKLENAIAELTKFFSQLHSKL 136 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 354
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=70.56 E-value=31 Score=26.62 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLR-DELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~-~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+..+++++.-+..|+-|...+- ..-..+..++...+.+...|+.+|.
T Consensus 31 e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 31 ERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555554442 3334445555555666666665554
No 355
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=70.46 E-value=21 Score=30.77 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
.|+..++.|+.+...++.+++.+...++.
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333
No 356
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=70.45 E-value=35 Score=34.21 Aligned_cols=46 Identities=26% Similarity=0.415 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
++-+|+.++..+-.||.+|...+...++--..|..|+..|+++-..
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556655555555555566666655555433
No 357
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.44 E-value=42 Score=33.16 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 019071 276 ECEELQARVETLSNENRNLRDELQ---RLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~---~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
-++++++++..--..|.-|..+|. .|-+..+.|+.|-+-|+++|.--
T Consensus 134 sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelavr 183 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVR 183 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666665566666655543 34445555556655566555443
No 358
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=70.31 E-value=13 Score=39.16 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 283 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 283 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
-|+.|+.....-..+.+.|+++.+.|+.+|..|-++|.+|+.
T Consensus 273 Yid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 273 YIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 466777777778888899999999999999999999999874
No 359
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=70.27 E-value=19 Score=38.08 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|+..++.+...+..|+....+++.++..|+.+++.|..+-+.|+.+|++
T Consensus 444 k~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 444 KLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666666666666666666666654
No 360
>PLN02320 seryl-tRNA synthetase
Probab=70.27 E-value=16 Score=38.86 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019071 297 ELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 297 el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
++..|++++..|+.+...+.++
T Consensus 138 ~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 138 EGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 361
>PHA03162 hypothetical protein; Provisional
Probab=70.26 E-value=6.5 Score=34.87 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 298 LQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
++.|..++.+|+.||..|+.+|..-.+++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~ 43 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDD 43 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 56777788889999999999998776665
No 362
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=70.02 E-value=31 Score=33.19 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
-+..|+.+.......++.|..||..|+.+|++|.+..
T Consensus 106 ~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 106 HIQSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4566777777788888888999999999998887655
No 363
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.97 E-value=23 Score=28.93 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=19.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 265 SARRSRLRKQ----AECEELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 265 SARRSR~RKk----~~leeLE~rv~~Le~EN~~L~~el 298 (346)
|-++-|.||. .+++.|+.++..|..+|..|+.++
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555554 345556666666666666666554
No 364
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.96 E-value=19 Score=34.95 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
..|++++..|..|...|..+++..+
T Consensus 60 ~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 60 RSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 365
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.93 E-value=52 Score=36.44 Aligned_cols=44 Identities=32% Similarity=0.438 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
++++.++..|+.+.+....++..|+++.+.|+..-..|.++++.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333333333333
No 366
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=69.90 E-value=50 Score=36.38 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhcCCch
Q 019071 310 SENNSIKEDLSRLCGPEA 327 (346)
Q Consensus 310 ~EN~~Lr~~L~~L~g~~~ 327 (346)
.++++|..+|.+|.|...
T Consensus 300 ~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHhhcCce
Confidence 455555555666655443
No 367
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.88 E-value=17 Score=39.41 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+++++|+.+++.|..+...|..+++.|+.++.++..|..+.+.++..+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433
No 368
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=69.65 E-value=16 Score=33.95 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
+.=.|++++.|+++|..|+.+++.|
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666655
No 369
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=69.56 E-value=29 Score=38.17 Aligned_cols=46 Identities=30% Similarity=0.496 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+..|+.++..|+.+...|..++..+.++++.+..++..+..+|..+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 288 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESL 288 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666555555555554444443
No 370
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.53 E-value=19 Score=30.72 Aligned_cols=43 Identities=35% Similarity=0.452 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 313 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~ 313 (346)
+-=|.-+++|-+||+..+.||-.|+.+.+.|-+-++.|..--.
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSS 108 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASS 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhh
Confidence 4456678999999999999999999999999888887766543
No 371
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=69.49 E-value=38 Score=26.25 Aligned_cols=43 Identities=7% Similarity=0.303 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+++++..++.+...+..++..|......++.+...|..+|.++
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444
No 372
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.46 E-value=41 Score=37.36 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 019071 287 LSNENRNLRDELQR 300 (346)
Q Consensus 287 Le~EN~~L~~el~~ 300 (346)
|+.||-.|+++|..
T Consensus 102 lEeENislQKqvs~ 115 (717)
T PF09730_consen 102 LEEENISLQKQVSV 115 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 373
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=69.37 E-value=27 Score=32.95 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+...++.++..++.+++.++.+...++.++..
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 134 (322)
T TIGR01730 103 DLDDAKAAVEAAQADLEAAKASLASAQLNLRY 134 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444445555555555555555555554444
No 374
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=69.35 E-value=20 Score=29.66 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQRL 301 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L 301 (346)
.+.|.+||+.|..|....
T Consensus 32 ~~kL~~en~qlk~Ek~~~ 49 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVA 49 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544443
No 375
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=69.31 E-value=21 Score=31.57 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
..++.|+.++...+...+.-...|..|++.+..+..++..+..++..+-.
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 34677888888888888888888888888888888888888877555433
No 376
>PF15556 Zwint: ZW10 interactor
Probab=69.26 E-value=67 Score=30.81 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=53.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 260 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 260 ~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+.+++..+.|.-.+++.-.-|..+..|..-..+++.+....+++++.|..|...|+.+...-
T Consensus 112 aKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qe 174 (252)
T PF15556_consen 112 AKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQE 174 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888888899999999999999999999998877654
No 377
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=69.23 E-value=9.6 Score=30.80 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
..|..||..|+.+|+.|+.+++.+..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666555444444433
No 378
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=69.17 E-value=29 Score=34.12 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=5.7
Q ss_pred CccCccCCCCCCC
Q 019071 146 VSQSAESGSDGSS 158 (346)
Q Consensus 146 ~s~S~esg~~gSs 158 (346)
.|++++.++.|.+
T Consensus 94 lTC~~~~~s~Gv~ 106 (264)
T PF07246_consen 94 LTCIGSLGSEGVS 106 (264)
T ss_pred eeecCCCCcceeE
Confidence 3444444444443
No 379
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=69.04 E-value=60 Score=34.41 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L 301 (346)
.|+.++..++.++..|..++..|
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l 86 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREV 86 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333333
No 380
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=69.02 E-value=35 Score=27.70 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.+++|...|..|.....+|...++.++.+.+....|+.+-.++|...
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 445777888888888888888888888888888888888888877654
No 381
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=69.02 E-value=23 Score=35.72 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
-|+|..+.+++|+.+.+.|..+|...+..+..|...+..|..--.-|...|..
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 46777888899999999999999999999999888888888777777766643
No 382
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.01 E-value=52 Score=34.77 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
...+|..+++++.++...++.+|..|
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333333
No 383
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=68.96 E-value=13 Score=28.84 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
++..|+..|.-|+.|...+ +..|-.|++.|+.+|..|.-
T Consensus 4 qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~ 42 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTF 42 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccce
Confidence 4555666666666665532 22334444444444444443
No 384
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=68.76 E-value=19 Score=28.33 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
.|..+++.|+..|..|..-++..+.+++.|.....+-.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~e 39 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYE 39 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666655555555555554444333
No 385
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=68.69 E-value=18 Score=33.39 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRN-------------------------------LRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~-------------------------------L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+++|.++++.-...=...+.. |..++..|+++++.|..+|..|+.++..
T Consensus 57 rk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 57 RKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCchhcchhhcCC
Q 019071 322 LCGPEAVANLEQSNP 336 (346)
Q Consensus 322 L~g~~~~s~L~~~~~ 336 (346)
+. ++...|.++++
T Consensus 137 ~~--eDy~~Li~Im~ 149 (170)
T PRK13923 137 TE--EDYRALIVIMN 149 (170)
T ss_pred HH--HHHHHHHHHHH
No 386
>PHA03161 hypothetical protein; Provisional
Probab=68.67 E-value=32 Score=31.12 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
.+|+..|..|..+.+..++|+..|.
T Consensus 57 ~~i~~~v~~l~~~I~~k~kE~~~L~ 81 (150)
T PHA03161 57 KSIEGMLQAVDLSIQEKKKELSLLK 81 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 387
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=68.64 E-value=74 Score=33.24 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+..|.++-+.|+.++..|.++..+|..+...|..+-+.|+
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555554
No 388
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.64 E-value=12 Score=39.72 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhcchh
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLE 332 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~-~~~s~L~ 332 (346)
.+|++++..|.++|..|...+ ...+.|...|+++|.+|..| ....++.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 52 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELL-------KAARDKLSKLKSQLEQLAQPPSTYGTFL 52 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 345555555555555555554 55566666666666666553 3344443
No 389
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.60 E-value=47 Score=38.33 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019071 303 EECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 303 ~e~~~L~~EN~~Lr~~L~~ 321 (346)
-+++.|..|...++.+|..
T Consensus 822 lE~e~l~~e~~~~k~~l~~ 840 (1174)
T KOG0933|consen 822 LEHEELEKEISSLKQQLEQ 840 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 390
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=68.40 E-value=11 Score=33.00 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNL 294 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L 294 (346)
+++++|+.+++.|+.+.+.+
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 391
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=68.33 E-value=1.7 Score=47.37 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 247 IQDERELKRQKR-KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 247 ~~DE~e~KR~RR-k~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
+.||-+.=|.+. +..-.|+.-..=++|-+.+++|+.+|+.|+.+|..|...+..|.++.
T Consensus 296 LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 296 LRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456633333332 33333433333336788899999999999998877666555554443
No 392
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=68.32 E-value=79 Score=33.08 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
++++..|..+...|+.+...|..+...|..+.+.|..+-..|
T Consensus 136 qQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 136 QQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333333333
No 393
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.25 E-value=64 Score=34.82 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
++|+.++..++.+...|..++..++.+++.+.
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~ 243 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQ 243 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 394
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=68.24 E-value=12 Score=32.76 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
++++++++.|+.+..+|..+++.++
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666677777777777777666554
No 395
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.13 E-value=11 Score=40.07 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
.++..|..+.+.|.+...+.+.++..|++++++|.
T Consensus 8 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 8 ATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566667777777777777777766666666553
No 396
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=68.05 E-value=56 Score=32.73 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=0.0
Q ss_pred hhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
Q 019071 245 QWIQDE-RELKRQKRKQSNRESARRSRLRKQAECEELQA----------------------------RVETLSNENRNLR 295 (346)
Q Consensus 245 ~~~~DE-~e~KR~RRk~~NRESARRSR~RKk~~leeLE~----------------------------rv~~Le~EN~~L~ 295 (346)
..++|| .-+|.+.-.++| .++++...|+++.+. ++..|.+||..|.
T Consensus 2 ~~Lq~eia~LrlEidtik~-----q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~ 76 (305)
T PF14915_consen 2 HMLQDEIAMLRLEIDTIKN-----QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLN 76 (305)
T ss_pred chHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 296 DELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 296 ~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.++..=++..+.|+.|....+.+|..
T Consensus 77 SkLe~EKq~kerLEtEiES~rsRLaa 102 (305)
T PF14915_consen 77 SKLEKEKQNKERLETEIESYRSRLAA 102 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
No 397
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.01 E-value=27 Score=35.98 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 286 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.|..+..+|++++..|.++...++.+...+...|-.+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444444555555555555555544444444443
No 398
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.01 E-value=38 Score=37.90 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
+.|+.+.+.|.+.++.++.||.+|+..
T Consensus 451 e~lq~kneellk~~e~q~~Enk~~~~~ 477 (861)
T PF15254_consen 451 ELLQSKNEELLKVIENQKEENKRLRKM 477 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555554443
No 399
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=67.86 E-value=12 Score=37.06 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhcchhhcCCC
Q 019071 289 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLEQSNPT 337 (346)
Q Consensus 289 ~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~-~~~s~L~~~~~~ 337 (346)
.+++.|+.++..++.++..++.|...|+++|.++..+ ..+..+...+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDD 55 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecC
Confidence 3444444455555555555566666666666666553 334444444433
No 400
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=67.73 E-value=12 Score=37.09 Aligned_cols=38 Identities=39% Similarity=0.601 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
.|+.+++.|+.+...|+.++..+++++..++.++..|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555556666666666666666666666655
No 401
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.68 E-value=28 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 286 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.|+.....|..++..|..++..|..+...|+.+|..+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666666666666655
No 402
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.65 E-value=20 Score=39.72 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
++.|+.+...|+.|..+++.+=.+|-.+|..|+.||-.|..++..|..
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555666666777777777666666653
No 403
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=67.48 E-value=16 Score=34.32 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
+|..++..++.|+..|++=|..-+++|..|+.
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKR 79 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKR 79 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666655555555543
No 404
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=67.45 E-value=36 Score=28.99 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 297 ELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 297 el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.|..+.+|++.|.-.|.+|..++..|+
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 405
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=67.44 E-value=55 Score=28.28 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.++.++.....++.++.....|-.-=....+|+...+.||..|+..|..
T Consensus 12 ~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 12 AQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 3344444444444444444444444445566667777788888777754
No 406
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=67.44 E-value=60 Score=31.94 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 291 NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 291 N~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
...|......|..++++.+.|..+.+.+|..|
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444443333
No 407
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=67.41 E-value=78 Score=29.75 Aligned_cols=65 Identities=22% Similarity=0.363 Sum_probs=40.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 255 RQKRKQSNRESARRSRLRKQAECEELQA--------------RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 255 R~RRk~~NRESARRSR~RKk~~leeLE~--------------rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+--+++.+-.++...|-||- +.+|+. =+..|+.|-..|+.+++.=+.....++.|+..+..+|.
T Consensus 95 ~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~ 172 (192)
T PF09727_consen 95 KMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLE 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555553 344433 24457777778888887777777778877777666555
Q ss_pred H
Q 019071 321 R 321 (346)
Q Consensus 321 ~ 321 (346)
.
T Consensus 173 e 173 (192)
T PF09727_consen 173 E 173 (192)
T ss_pred H
Confidence 4
No 408
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=67.36 E-value=15 Score=36.29 Aligned_cols=48 Identities=27% Similarity=0.348 Sum_probs=38.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 260 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 260 ~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
+=|.|+-+.+ =+.+++.|..+|..|+..|.+|++++...++.++.|+.
T Consensus 66 ~y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 66 IYNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3466665443 46788999999999999999999999999988888874
No 409
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.33 E-value=8.6 Score=40.36 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccccC
Q 019071 47 PFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYP 84 (346)
Q Consensus 47 ~y~~s~va~~~phPYmWg~q~~m~ppygtp~PY~a~yp 84 (346)
++|+. ++|||.+= .+.+.||--.||.+|||
T Consensus 424 p~f~m----~~~hP~~~----~p~~~~g~~~P~~~mpp 453 (483)
T KOG2236|consen 424 PSFPM----FQPHPPES----NPPANFGQANPFNQMPP 453 (483)
T ss_pred CCCCc----cCCCCCCC----CCcccccccCccccCCC
Confidence 56665 36666653 45667777778777775
No 410
>COG4420 Predicted membrane protein [Function unknown]
Probab=67.27 E-value=29 Score=32.56 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
|...|..++..|+..+-.++.|+..|++.|.++..+.
T Consensus 135 e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~ 171 (191)
T COG4420 135 EVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPEL 171 (191)
T ss_pred HHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCccc
Confidence 3344444555554444455556666666666555433
No 411
>PRK10963 hypothetical protein; Provisional
Probab=67.17 E-value=16 Score=34.24 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSN---ENRNLRDELQRLSEE 304 (346)
Q Consensus 278 eeLE~rv~~Le~---EN~~L~~el~~L~~e 304 (346)
.+||.++..|-. +|..+..++..|.-.
T Consensus 54 ~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 54 HVLEEEMTLLMEQAIANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433 566666655555443
No 412
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=67.12 E-value=51 Score=30.27 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECE-----KLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~-----~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
+.++-|+.+.+.|..+..+|...+..+..++- +=+.|..++..+|..|. +.|..+++....
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le--~~~~~~e~~~~~ 150 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLE--ARLKKLEPIYIT 150 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHH--HHHHHHHhhccC
Confidence 33455555555555555555555555544322 22456666666666666 566666665544
No 413
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=67.11 E-value=26 Score=36.61 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++.+++.|.+++..|+.....|...|..|.
T Consensus 198 ~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 198 LKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444443
No 414
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.08 E-value=41 Score=26.59 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
...|..|+..+..+..++..|+..++.+..+...|+.++.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555566666666666666666666666554
No 415
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=67.01 E-value=14 Score=38.29 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKL-------------TSENNSIKEDLSR 321 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L-------------~~EN~~Lr~~L~~ 321 (346)
..+++.|++.+.+.|+..|..|..+++.|+.++..+ +..++.+++++..
T Consensus 288 ~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~~~~~~~~e~~i~~e~~~ 349 (411)
T KOG1318|consen 288 TLQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKLTNSLEGSEQIIKEESDS 349 (411)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhcchh
Confidence 344467777777788888888888887777776533 3445555555554
No 416
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.94 E-value=49 Score=38.66 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 270 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
-.+++..+.+|+..+..++.|..++..++..|+.+...|......|++++..+
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443
No 417
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=66.89 E-value=20 Score=38.39 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+++.+-.++.++..||..|..+|-.|++++..++.|+..|.+-|....
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666667777777777777777777766666665543
No 418
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.89 E-value=46 Score=39.89 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
|+.+++.++.+...+..++..+..++..++.+...|+
T Consensus 360 Lee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 419
>PHA03011 hypothetical protein; Provisional
Probab=66.87 E-value=32 Score=29.46 Aligned_cols=46 Identities=26% Similarity=0.399 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLS-------EECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~-------~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+++|..+...|-.|-.-+..+++.|. ++++-|++|..+||+.+..
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555444444444443 4445555555555555443
No 420
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=66.81 E-value=11 Score=29.10 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhc
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 329 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s 329 (346)
|+.+|..++.-..-|+.+-... +..|..|...|+.++.+|.-.-.+.
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~kL~m~ 47 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFKLIMK 47 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccceeeeec
Confidence 4667777777777777666443 5778889999999998887443333
No 421
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=66.76 E-value=71 Score=33.49 Aligned_cols=43 Identities=30% Similarity=0.454 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.|..+...|+++-..++..+..++.++..|+.||..|.+++..
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444555555555555444443
No 422
>PRK09343 prefoldin subunit beta; Provisional
Probab=66.76 E-value=31 Score=29.59 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhh
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 333 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~ 333 (346)
..|..+++.+..++..|+.+...|+.+|..++ ..|+.|.+
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q--~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQ--AKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 44555666666666666666666666666655 44444443
No 423
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.76 E-value=47 Score=38.67 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcC
Q 019071 288 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 335 (346)
Q Consensus 288 e~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~ 335 (346)
-+.|.+|.+++..+.++.+.|..+|.+.+.++..+. +..++++.++
T Consensus 264 ~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~--q~~~~i~eQi 309 (1109)
T PRK10929 264 FKINRELSQALNQQAQRMDLIASQQRQAASQTLQVR--QALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 345777888887777777777777777666666665 4444444443
No 424
>PLN02678 seryl-tRNA synthetase
Probab=66.63 E-value=45 Score=34.93 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.|..++..|++++..|+.+...|.++|..
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555443
No 425
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=66.35 E-value=18 Score=35.78 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
-++.|+.++..|+.||.+|+.+++.|+.+++....=...+
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766665555444433333
No 426
>PHA03155 hypothetical protein; Provisional
Probab=66.29 E-value=8.5 Score=33.33 Aligned_cols=29 Identities=34% Similarity=0.538 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 298 LQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
++.|..++.+|+.||..|+.+|..-.+++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~ 38 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPE 38 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 45667777888889999998887654444
No 427
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=66.24 E-value=27 Score=35.57 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDE----------LQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~e----------l~~L~~e~~~L~~EN~~Lr~~ 318 (346)
++++.|+.+++.|+.+..+|..+ +..|+++++.++.+..++++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666655554 444444444444444444433
No 428
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=66.18 E-value=92 Score=29.00 Aligned_cols=86 Identities=26% Similarity=0.371 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 019071 248 QDERELKRQKRKQSNRESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSE--------ECEKLTSENNSIKED 318 (346)
Q Consensus 248 ~DE~e~KR~RRk~~NRESARRSR~RK-k~~leeLE~rv~~Le~EN~~L~~el~~L~~--------e~~~L~~EN~~Lr~~ 318 (346)
..+.++=+.-....|=.-.-+.++|| +..+.+++.++.....+...+..++..|+. +.+.|..+...|..+
T Consensus 54 ~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~ 133 (194)
T PF15619_consen 54 DTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQK 133 (194)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q ss_pred HHHhcCCchhcchhhcC
Q 019071 319 LSRLCGPEAVANLEQSN 335 (346)
Q Consensus 319 L~~L~g~~~~s~L~~~~ 335 (346)
|..-. ..|.+|+-++
T Consensus 134 l~~~~--~ki~~Lek~l 148 (194)
T PF15619_consen 134 LQEKE--KKIQELEKQL 148 (194)
T ss_pred HHHHH--HHHHHHHHHH
No 429
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.14 E-value=27 Score=28.80 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
..|+.+++.|+.+...|..++..+..++..|+.+...|
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444433
No 430
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=66.13 E-value=16 Score=37.98 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhcchhhcCCC
Q 019071 268 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 337 (346)
Q Consensus 268 RSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g-~~~~s~L~~~~~~ 337 (346)
+||+|.++ |++.++.|+.+.+-++.+.. ...|+.|+..++++|..|++ +-.+.++...+++
T Consensus 55 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (438)
T PTZ00361 55 KCRLRLLK----LERIKDYLLLEEEFITNQEA-----QKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDE 116 (438)
T ss_pred hhHHHHHH----HHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCC
Confidence 47776543 44555555555444433331 13567778888888888877 4446666666555
No 431
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=66.07 E-value=93 Score=31.09 Aligned_cols=71 Identities=21% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 252 ELKRQKRKQSNRESARRS-RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 252 e~KR~RRk~~NRESARRS-R~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.+..|..+.+..++-++ |.-+-+.+.+|-.++..|..+-..|-.+|..|+++-..+-...+.|...+..+
T Consensus 24 e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 24 ELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 432
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=65.93 E-value=49 Score=26.76 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLCGP 325 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~----~EN~~Lr~~L~~L~g~ 325 (346)
+...++++.++..--.|...++..|-.|......++ .|...|+.+|....+.
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~~~ 79 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRGRQ 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHTT-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
No 433
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.93 E-value=30 Score=33.40 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 268 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 268 RSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.|.-+|..++.++.-+..++.+...|..++..|+.+.+.. |..|+.++....
T Consensus 156 k~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 156 KRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34456666666666666666666667777777776666655 556777777765
No 434
>PRK14156 heat shock protein GrpE; Provisional
Probab=65.84 E-value=13 Score=34.22 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
++.|+.+...|+.++.++..+++-++
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfeN~r 61 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQNIQ 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333333333
No 435
>PLN02678 seryl-tRNA synthetase
Probab=65.78 E-value=32 Score=36.03 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 019071 310 SENNSIKEDLSR 321 (346)
Q Consensus 310 ~EN~~Lr~~L~~ 321 (346)
.|...|..++..
T Consensus 85 ~ei~~le~~~~~ 96 (448)
T PLN02678 85 KEITEKEAEVQE 96 (448)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 436
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=65.75 E-value=34 Score=35.26 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
....|+..+..|.++++.|..+...|+++|..+
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555666666666666666666666665
No 437
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=65.72 E-value=85 Score=26.73 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+..|..+++.++++|+.|..+...|+.++..|+.+-.-|.++...
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~ 96 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARS 96 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344555566666666666666666666666666664444444333
No 438
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=65.70 E-value=9.6 Score=33.17 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 298 LQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
++.|..++.+|+.||..|+.+|..-.+
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 566777888899999999999998776
No 439
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=65.68 E-value=47 Score=38.31 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=49.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 255 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 255 R~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
-.+-.+.||+=-...-+++-..++++-.+.-.|+.++..|..+++.|.+++.+|...+..|...-+.|
T Consensus 374 alkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L 441 (1195)
T KOG4643|consen 374 ALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKL 441 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556778877777777777788888888888888887777777777777777777666665544443
No 440
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.68 E-value=17 Score=40.76 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+|+++|...+..|.....+|--+++.|++....|..||..|.+++..+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666655
No 441
>PRK10698 phage shock protein PspA; Provisional
Probab=65.67 E-value=1.1e+02 Score=28.91 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.++..|+.+...+...+..|+..+..|+.....++.+-..|.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555444
No 442
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=65.57 E-value=91 Score=33.12 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDE 297 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~e 297 (346)
+..+..++..++.++.+|..+
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~ 89 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444333333
No 443
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.55 E-value=34 Score=34.08 Aligned_cols=43 Identities=35% Similarity=0.423 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 265 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 265 SARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
.++..=..++..+.+|+.++..|+.+......+...|+.+.+.
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455555555555555555555544444444444443
No 444
>PRK14148 heat shock protein GrpE; Provisional
Probab=65.53 E-value=19 Score=33.75 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
.++++++|..++..+.++...++++..+=+++.
T Consensus 52 l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~ 84 (195)
T PRK14148 52 LEDSCDQFKDEALRAKAEMENIRKRAERDVSNA 84 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665554444333
No 445
>PRK14161 heat shock protein GrpE; Provisional
Probab=65.51 E-value=28 Score=32.04 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el 298 (346)
+++++|..++..+.++...++++.
T Consensus 33 ~e~~elkd~~lR~~AefeN~rkR~ 56 (178)
T PRK14161 33 AEIEELKDKLIRTTAEIDNTRKRL 56 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 446
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=65.36 E-value=31 Score=37.20 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el 298 (346)
++++.||.+++.|+.+..+|..++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777776655544
No 447
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=65.29 E-value=22 Score=28.75 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
..+..+.+.|..+...|++++..|+.|...|.
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444555555555555555555553
No 448
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=65.26 E-value=26 Score=28.80 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
..|+.|..-+..|+..|..|..+|..|-+.+.+.+.|.++..
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888999999999998888888777776655433
No 449
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=65.17 E-value=1.2e+02 Score=28.70 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+.++.++..|+........+...+...+..|..++..|..+|.
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444433
No 450
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=64.89 E-value=43 Score=27.68 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..+..++..|...++.|..+|..|..+|..++
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667788888888889999999999888775
No 451
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=64.78 E-value=70 Score=25.44 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
++.|+.+++.+..|...|..+.+.+.+..+........+-..+..+
T Consensus 35 i~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 35 IDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333333
No 452
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.73 E-value=57 Score=39.80 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 250 ERELKRQKRKQSNR-ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 250 E~e~KR~RRk~~NR-ESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++++.++|+++.+. .=.|..+.-+...++.+..+|+.+..++..|...+..++..++.|..+...|..+|+...
T Consensus 811 ~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~ 885 (1822)
T KOG4674|consen 811 ERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAK 885 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 46667777766664 456667777778888999999999999999999999999999999999988888887764
No 453
>PHA02109 hypothetical protein
Probab=64.69 E-value=19 Score=33.69 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
|.+++-+|+.+++.|..|..+|+.++..++.+....
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~ 226 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKRR 226 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555554443
No 454
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=64.56 E-value=25 Score=29.22 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
++.|+++++.|+.+...|..++..++.++..|+.+.+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 455
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=64.34 E-value=24 Score=36.99 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 329 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s 329 (346)
+++|...++.|+.+|.+|+..++.|++.+..++.+.-+||..+..++-.....
T Consensus 408 ~~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~a 460 (514)
T KOG4370|consen 408 EEELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNA 460 (514)
T ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 34455555556666666666666666666666666666666555554433333
No 456
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=64.19 E-value=58 Score=36.90 Aligned_cols=66 Identities=23% Similarity=0.253 Sum_probs=34.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 258 RKQSNRESARRSRLRKQAECEELQARVETLSN--ENRNL-----------RDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 258 Rk~~NRESARRSR~RKk~~leeLE~rv~~Le~--EN~~L-----------~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
--+..|+.-|.-|+.++-+..+|+.++..|+. -+... ..-=..++.+++.|..|+.+|..+|..+.
T Consensus 612 ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~ 690 (988)
T KOG2072|consen 612 EEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQE 690 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666665555566665555542 01100 00112334556777777777777776654
No 457
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=64.10 E-value=15 Score=34.61 Aligned_cols=53 Identities=30% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhc
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRL-----------------------SEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L-----------------------~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.|++.+.+-|..++..|+.++..|+..+..+ ......|..+..+|+++|...+
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er 151 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRER 151 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHH
No 458
>PLN02320 seryl-tRNA synthetase
Probab=64.10 E-value=48 Score=35.32 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 019071 308 LTSENNSIKEDLSRL 322 (346)
Q Consensus 308 L~~EN~~Lr~~L~~L 322 (346)
|..|-..|+++|..|
T Consensus 135 l~~~~k~lk~~i~~l 149 (502)
T PLN02320 135 LVEEGKNLKEGLVTL 149 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 459
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=64.09 E-value=37 Score=31.68 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCchhcchhhcCC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEE--CEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 336 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e--~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~ 336 (346)
...+..|+.++..|..++.....+|..|..- ++.+..+.+.|+.++...+ ..|.+++..+.
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~--erl~~~k~g~~ 147 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYR--ERLKNIKAGTN 147 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH--HHHHHHHHhcc
No 460
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=63.95 E-value=68 Score=32.16 Aligned_cols=51 Identities=25% Similarity=0.420 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 274 QAECEELQARVETLSNEN------------------RNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN------------------~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+...+.|+.+++.|+.+. +.|-.-|...++++.+|+.+-..|+.++..|+|
T Consensus 50 a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~adLhg 118 (389)
T KOG4687|consen 50 AARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLDQKADLHG 118 (389)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhc
Confidence 445566666666666543 445556666677777777777777777777775
No 461
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=63.82 E-value=44 Score=34.41 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETLSNE------NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~Le~E------N~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.++++|+..+..|+.. -...+.++..|.+.+..|..+...|++++..|.
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444431 234556666677777777777777777777665
No 462
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=63.81 E-value=50 Score=31.71 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 263 RESARRSRLRKQAEC----EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 263 RESARRSR~RKk~~l----eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
-+|+-.+-+||.-.. ..++.++..|+.++..|..+|..|+.+++.-+.-+.++++
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ 227 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEERE 227 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 467778888886544 4577889999999999999999999888877666665554
No 463
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=63.75 E-value=30 Score=29.10 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchhcchhhcC
Q 019071 296 DELQRLSEECEKLTSENNSIKEDLSRLCG-----PEAVANLEQSN 335 (346)
Q Consensus 296 ~el~~L~~e~~~L~~EN~~Lr~~L~~L~g-----~~~~s~L~~~~ 335 (346)
.-|..-+.+...+...|..|..+|..... ...|..|+..+
T Consensus 37 ~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 37 KMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777777666542 23345554444
No 464
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.70 E-value=56 Score=38.34 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
.+..+.++++..++++...|..++..++++.+.++..|+.+
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555444444
No 465
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=63.61 E-value=18 Score=33.64 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
......+..++..|+.++..|+.++.++..+++-++....+=++++.+......+.+|...+|+
T Consensus 35 ~~~~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDn 98 (193)
T COG0576 35 ENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDN 98 (193)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=63.39 E-value=16 Score=35.66 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQ-ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 328 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE-~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~ 328 (346)
.+-.+++-|.+..-.-+-|-.+||.+--..|. .-...+-+|..+|.+++..|+.++..|+.|..+----+.++.|...-
T Consensus 181 ~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~~l~~~Dm~G~~~~ 260 (289)
T COG4985 181 DKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELERQFLYLVDMQGETVS 260 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhceEEEEccCCCEee
Q ss_pred cchhhcCCC-CCC
Q 019071 329 ANLEQSNPT-QSC 340 (346)
Q Consensus 329 s~L~~~~~~-~~~ 340 (346)
-.|.-++++ ++|
T Consensus 261 vpLsei~~awyPN 273 (289)
T COG4985 261 VPLSEILDAWYPN 273 (289)
T ss_pred ccHHHHHHhhCcC
No 467
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=63.38 E-value=45 Score=27.55 Aligned_cols=48 Identities=31% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVE------TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~------~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+++++-|..+|+ ..-.||-.|+.++.+|+.-+ ...|-..|-+++..|+
T Consensus 30 ~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~ 83 (86)
T PF12711_consen 30 KEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELR 83 (86)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
No 468
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.35 E-value=56 Score=35.38 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++.+...+.--.+-++-|+-+.+=+.-+.-++.-+..++..++.+...++.|+.+|+..+.|+..|+.+...|+
T Consensus 248 ~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 248 EEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=63.30 E-value=17 Score=30.70 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 288 SNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 288 e~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
..+...+..++..|++++.+|+.||..|+.-+.
T Consensus 70 ~~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 70 ASELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PRK14127 cell division protein GpsB; Provisional
Probab=63.30 E-value=35 Score=29.23 Aligned_cols=49 Identities=12% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
.++...=++.+-.+.+.|..++..|++++..|+.++..++.++......
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
No 471
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.28 E-value=20 Score=35.11 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
+.+|+.++..|+.+..+|+. +++|+.+.+..+.+..+.-.+|..+.+..
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~ 106 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGR 106 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccc
No 472
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=63.26 E-value=30 Score=32.83 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcch
Q 019071 275 AECEELQARVETLSNENRNLRD---------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~---------el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
+++-+++.|++.|+.+-..|++ ++-.+++++..++.|...|+.++..|...-+.+++
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti 197 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTI 197 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEE
No 473
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=63.04 E-value=10 Score=39.55 Aligned_cols=47 Identities=32% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.++|..+|..|..+|..|+.+++.|+-.|..+..||.-|+.--..|+
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQ 91 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQ 91 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHh
No 474
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=63.01 E-value=46 Score=33.71 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 246 WIQDERELKRQKRKQSNRESARRSRLR--KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 246 ~~~DE~e~KR~RRk~~NRESARRSR~R--Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
|-.|-.-..+.|-..-.+.+.--.+.+ --.+.-.|.++-+.|+.||..|+.++..+ +.++.||..|+..+
T Consensus 26 ~~~~~~~~e~~r~~~~d~~ap~~~~~~~p~~~~y~~L~~EN~~Lk~Ena~L~~~l~~~----e~l~~En~~Lr~ll 97 (337)
T PRK14872 26 WSLPRPVYEKIQDTFVSLCSKFFPKFRQGPSSHALVLETENFLLKERIALLEERLKSY----EEANQTPPLFSEIL 97 (337)
T ss_pred hcCCcHHHHHHHHhhHHHhchhhHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
No 475
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=62.96 E-value=1.3e+02 Score=30.14 Aligned_cols=77 Identities=29% Similarity=0.378 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 245 QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 245 ~~~~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
....||.+.|+. -...+.+=...-|.-=.+.+..+..+.+.|..+...|+.++..|+.+...+-.+..+|+++...+
T Consensus 5 ~~~~~E~e~K~~-~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ei 81 (294)
T COG1340 5 LDKLDELELKRK-QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEI 81 (294)
T ss_pred HHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PRK14150 heat shock protein GrpE; Provisional
Probab=62.79 E-value=22 Score=33.08 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
....+++|+.++..|+. .|+.++-++..+++-++....+=++++........+.+|...+++
T Consensus 39 ~~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~Dn 100 (193)
T PRK14150 39 ADARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDN 100 (193)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
No 477
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=62.74 E-value=17 Score=31.23 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
.++..|..+..+|++||.-|+-+++.|..-+....+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 478
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=62.63 E-value=93 Score=26.11 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCC
Q 019071 263 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 336 (346)
Q Consensus 263 RESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~ 336 (346)
..+.+-.++|.+ .+.++..+...+..|..|...+..-+.-...+...+.+|+.+..... ..|++.....+
T Consensus 22 ~qs~~i~~L~a~--n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~--e~ik~~lk~d~ 91 (110)
T PF10828_consen 22 YQSQRIDRLRAE--NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERR--ESIKTALKDDP 91 (110)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCc
No 479
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=62.61 E-value=18 Score=30.61 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 312 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 312 (346)
+.+++.++..|+.++..|+.|++.|++...-.+..+
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~ 108 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
No 480
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=62.55 E-value=70 Score=39.39 Aligned_cols=73 Identities=27% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+...+++++-.+-=.--++...+=.++++..++....++.+...|..+++.+.++.+.|+.+|..|..+|.++
T Consensus 1431 ~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1431 AALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=62.46 E-value=64 Score=33.81 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 019071 249 DERELKRQKRKQSNRESARRSRLRKQ------------AECEELQARVETLSNENRNLRD-------ELQRLSEECEKLT 309 (346)
Q Consensus 249 DE~e~KR~RRk~~NRESARRSR~RKk------------~~leeLE~rv~~Le~EN~~L~~-------el~~L~~e~~~L~ 309 (346)
.++-.+-+.|...-|.+-..+|.|.+ ..+..||.++..++.+...|+. ++..|+.++..|+
T Consensus 248 e~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe 327 (434)
T PRK15178 248 ENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLE 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCchhcch
Q 019071 310 SENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 310 ~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
.+...++.+|..-.|...+..+
T Consensus 328 ~QIa~er~kl~~~~g~~~la~~ 349 (434)
T PRK15178 328 KQIGEQRNRLSNKLGSQGSSES 349 (434)
T ss_pred HHHHHHHHHhhcCCCCCchhHH
No 482
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=62.45 E-value=34 Score=34.58 Aligned_cols=59 Identities=27% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhc
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 334 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~ 334 (346)
.++.++|+.+.++|++.+...+++++++.+...........-+.+|..|. +.+..++..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~--~sLk~~~~~ 61 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELK--KSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccC
No 483
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=62.40 E-value=25 Score=32.16 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
|.+.+.|+.|..++..+|..|++-+...+.....||.+|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 484
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=62.22 E-value=35 Score=27.17 Aligned_cols=50 Identities=24% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETL-SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~L-e~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|-+|-.|+.++..+ ...+..+..++-.|+-++..|+.|+..++..|.++.
T Consensus 20 KLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 20 KLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PHA00728 hypothetical protein
Probab=62.13 E-value=9.1 Score=33.75 Aligned_cols=45 Identities=33% Similarity=0.525 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCchhcc
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENN-SIKEDLSRLCGPEAVAN 330 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~-~Lr~~L~~L~g~~~~s~ 330 (346)
.+|++|+.||.+|+.++..| +.|.+.+. .=.++|..+..+..+.+
T Consensus 5 teveql~keneelkkkla~l----eal~nn~~~~~~e~lqEiEnPYTVTN 50 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAEL----EALMNNESAEEDEELQEIENPYTVTN 50 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHH----HHHHcCCCchhhhhHHHhcCCceehh
No 486
>PRK06835 DNA replication protein DnaC; Validated
Probab=61.92 E-value=67 Score=32.07 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Q 019071 247 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNL---------------RDELQRLSEECEKLTSE 311 (346)
Q Consensus 247 ~~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L---------------~~el~~L~~e~~~L~~E 311 (346)
+..+....-.|.-.+.|..+++-.+++++++-.--=++..|..+...+ ...++.|++++..|+.+
T Consensus 1 ~~~~~~~~i~r~y~~~r~~~~~~~~~r~~e~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 80 (329)
T PRK06835 1 MIKGYISEILKEYEKRRDKEELELKNRKEEVYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVK 80 (329)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 019071 312 NNSIKED 318 (346)
Q Consensus 312 N~~Lr~~ 318 (346)
...|...
T Consensus 81 ~~~lL~~ 87 (329)
T PRK06835 81 KAELLVS 87 (329)
T ss_pred HHHHHHH
No 487
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.56 E-value=1.1e+02 Score=26.78 Aligned_cols=70 Identities=13% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 251 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 251 ~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
+.+...||.+..|...=-.++-++.++.++ .+.+..+++..+..+..+++.+..--..|..+|..|++.+
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~------i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQ------IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 488
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=61.51 E-value=2.7 Score=40.30 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcch
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
.+...+++.....+..|+.-|..|-.+++.|+.||.+|+++-..|........|
T Consensus 118 KDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL~k~~~eke~ 171 (243)
T PF08961_consen 118 KDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARLLKGPVEKEL 171 (243)
T ss_dssp ------------------------------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhh
No 489
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=61.46 E-value=22 Score=34.76 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQR----LSEECEKLTSEN 312 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~----L~~e~~~L~~EN 312 (346)
..+.+|+++-+.|+.|+.+|+.++.. |++|+++|+..+
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 490
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.36 E-value=38 Score=28.07 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.++.-++.|+.....|..++..|.+++..+..+...|+..|..+..
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 129 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ 129 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 491
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=61.25 E-value=42 Score=33.11 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 260 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 260 ~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+-|...-|-|+|.+ +....-...+-....+|.+++..|+.++..|..+...|++.+.++.
T Consensus 201 ~qe~~kleRkrlrnr---eaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k 261 (279)
T KOG0837|consen 201 DQEKIKLERKRLRNR---EAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELK 261 (279)
T ss_pred hHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
No 492
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=61.22 E-value=56 Score=27.50 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcC
Q 019071 267 RRSRLRKQAECEELQARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 335 (346)
Q Consensus 267 RRSR~RKk~~leeLE~rv~~Le~EN-~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~ 335 (346)
++-|.+=....+.++.+++.|.... .+-..-|..-+.+...+...|..|..+|.... ..|..|..+.
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~--~~l~~lq~qL 74 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKE--ALLESLQAQL 74 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHC--HCCCHCTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
No 493
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=61.19 E-value=75 Score=25.90 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 261 SNRESARRSRLRKQAECEELQARVETLSNENRNLRD------------------ELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 261 ~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~------------------el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+++.+-+..|..=++++..|+.+++.=..-+..|.. .+..|-.++..|+.|...|..++..|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c
Q 019071 323 C 323 (346)
Q Consensus 323 ~ 323 (346)
+
T Consensus 81 ~ 81 (88)
T PF14389_consen 81 Y 81 (88)
T ss_pred H
No 494
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=61.06 E-value=74 Score=37.07 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 249 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 249 DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.+++....+.....-+.|+.......+.+..|+.+...++.+......++..++.+.+.++.+...|...|
T Consensus 464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 495
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=60.94 E-value=1.3e+02 Score=27.28 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 253 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDE-LQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 253 ~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~e-l~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+|+.+...+-+.|.+.+..=.+...+.+.++..-+.+-..++.+ .+.| ......+...+.++|..+
T Consensus 40 e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~---~a~~~~~~~~~ea~L~~~ 107 (155)
T PRK06569 40 NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSL---ESEFLIKKKNLEQDLKNS 107 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
No 496
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.58 E-value=58 Score=32.43 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 248 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 248 ~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
+-++-.|....|+-.-++--..-.+-++.+++-..++..|+.||..|...++.|....+.|..+...=..++.-|.|.
T Consensus 26 QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQ 103 (307)
T PF10481_consen 26 QLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQ 103 (307)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
No 497
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=60.39 E-value=5.6 Score=42.02 Aligned_cols=52 Identities=13% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCC
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 336 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~ 336 (346)
...+-.+...|+ +|+.|++|+++|+.|...|..++.+++.......|+...+
T Consensus 20 ~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~s~~d~lk~~~D 71 (489)
T PF11853_consen 20 AAAMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKHSAGDNLKFGGD 71 (489)
T ss_pred hhhhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhHhhhcCcEEEeeE
No 498
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=60.23 E-value=2.9 Score=35.50 Aligned_cols=44 Identities=39% Similarity=0.490 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 327 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~ 327 (346)
+..|+.+...|.+++..|..++..|+.|...|++++..|.....
T Consensus 1 ~~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~ 44 (118)
T PF08286_consen 1 IQELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEV 44 (118)
T ss_dssp ------------------------------------------HT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 499
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=60.16 E-value=57 Score=35.56 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 264 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 264 ESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++-+.-..=|.+|.+.|......++..+..|..++..|+++..........|...|..|.
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.98 E-value=39 Score=34.51 Aligned_cols=58 Identities=28% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Q 019071 267 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 267 RRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~---e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+|-+.=|.+-..-|+.++..+...|+.|++-.+.+++ +.++|+.+|+.|+.+|-..++
T Consensus 60 ~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 60 RREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Done!