Query 019071
Match_columns 346
No_of_seqs 259 out of 1178
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 2.8E-14 9.6E-19 105.7 6.3 52 254-305 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.4 8E-13 2.7E-17 100.1 10.3 58 254-311 2-59 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 8.8E-13 3E-17 99.1 9.2 57 254-310 1-57 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.4 9.2E-13 3.1E-17 99.3 6.9 57 254-310 1-57 (62)
5 2dgc_A Protein (GCN4); basic d 99.3 1.9E-12 6.5E-17 98.3 6.7 52 255-306 10-61 (63)
6 1ci6_A Transcription factor AT 99.2 2.1E-11 7.1E-16 92.5 7.9 57 253-309 1-57 (63)
7 1gd2_E Transcription factor PA 99.2 2.6E-11 9E-16 94.0 8.4 61 256-316 10-70 (70)
8 1hjb_A Ccaat/enhancer binding 99.0 1.1E-09 3.9E-14 88.1 8.4 62 253-314 14-75 (87)
9 1gu4_A CAAT/enhancer binding p 98.9 2.7E-09 9.3E-14 84.3 8.3 56 254-309 15-70 (78)
10 3a5t_A Transcription factor MA 98.8 9.4E-11 3.2E-15 97.6 -3.6 60 248-307 31-90 (107)
11 2wt7_B Transcription factor MA 98.6 2.9E-07 1E-11 74.5 10.3 67 250-323 23-89 (90)
12 2oqq_A Transcription factor HY 97.4 0.00036 1.2E-08 48.7 5.6 36 274-309 2-37 (42)
13 1skn_P DNA-binding domain of S 97.0 0.00034 1.2E-08 56.4 2.7 32 251-282 59-90 (92)
14 1deb_A APC protein, adenomatou 96.6 0.0073 2.5E-07 43.9 7.0 48 277-324 5-52 (54)
15 2jee_A YIIU; FTSZ, septum, coi 96.4 0.012 4.2E-07 46.6 7.9 53 277-331 22-74 (81)
16 3s9g_A Protein hexim1; cyclin 96.1 0.019 6.5E-07 47.0 7.6 48 275-322 37-91 (104)
17 2jee_A YIIU; FTSZ, septum, coi 95.9 0.028 9.6E-07 44.5 7.7 52 273-324 25-76 (81)
18 2w6a_A ARF GTPase-activating p 95.9 0.032 1.1E-06 41.8 7.4 41 277-317 22-62 (63)
19 3hnw_A Uncharacterized protein 95.8 0.039 1.3E-06 47.4 8.7 52 272-323 72-123 (138)
20 3he5_A Synzip1; heterodimeric 95.7 0.043 1.5E-06 38.4 7.1 45 276-320 4-48 (49)
21 2c9l_Y EB1, zebra, BZLF1 trans 95.7 0.053 1.8E-06 40.1 7.8 54 257-331 4-57 (63)
22 3a7p_A Autophagy protein 16; c 95.3 0.27 9.2E-06 43.1 12.5 75 250-324 64-138 (152)
23 1go4_E MAD1 (mitotic arrest de 95.3 0.05 1.7E-06 44.6 7.3 26 299-324 71-96 (100)
24 3oja_B Anopheles plasmodium-re 95.0 0.22 7.4E-06 50.0 12.6 46 278-323 533-578 (597)
25 3m48_A General control protein 95.0 0.024 8.3E-07 37.7 3.7 27 277-303 2-28 (33)
26 1ci6_A Transcription factor AT 94.9 0.077 2.6E-06 39.7 6.9 40 282-321 23-62 (63)
27 2oxj_A Hybrid alpha/beta pepti 94.9 0.031 1E-06 37.4 4.1 28 276-303 2-29 (34)
28 3vmx_A Voltage-gated hydrogen 94.8 0.12 4E-06 37.2 7.0 41 281-321 3-43 (48)
29 2wt7_B Transcription factor MA 94.6 0.3 1E-05 39.3 10.0 55 266-323 28-82 (90)
30 1kd8_B GABH BLL, GCN4 acid bas 94.6 0.066 2.3E-06 36.2 5.1 31 276-306 2-32 (36)
31 2v66_B Nuclear distribution pr 94.6 0.069 2.3E-06 44.6 6.4 46 277-322 37-82 (111)
32 3a2a_A Voltage-gated hydrogen 94.6 0.087 3E-06 38.9 6.1 41 281-321 10-50 (58)
33 3hnw_A Uncharacterized protein 94.5 0.22 7.5E-06 42.7 9.6 49 275-323 82-130 (138)
34 1uii_A Geminin; human, DNA rep 94.4 0.2 6.7E-06 39.8 8.3 34 289-322 46-79 (83)
35 3oja_B Anopheles plasmodium-re 94.4 0.2 6.9E-06 50.3 10.5 12 326-337 572-583 (597)
36 1kd8_A GABH AIV, GCN4 acid bas 94.3 0.06 2.1E-06 36.4 4.3 31 276-306 2-32 (36)
37 3efg_A Protein SLYX homolog; x 94.2 0.12 4.1E-06 40.4 6.6 50 275-324 14-63 (78)
38 1t2k_D Cyclic-AMP-dependent tr 94.1 0.29 1E-05 36.0 8.4 37 283-319 23-59 (61)
39 3cvf_A Homer-3, homer protein 94.1 0.086 2.9E-06 41.5 5.7 48 276-323 7-54 (79)
40 3m91_A Proteasome-associated A 94.1 0.2 6.8E-06 36.3 7.1 39 277-315 11-49 (51)
41 3c3f_A Alpha/beta peptide with 94.0 0.065 2.2E-06 35.7 4.1 28 276-303 2-29 (34)
42 2oqq_A Transcription factor HY 93.9 0.19 6.4E-06 35.1 6.4 37 284-320 5-41 (42)
43 3mq7_A Bone marrow stromal ant 93.9 0.28 9.5E-06 41.3 8.6 41 282-322 71-111 (121)
44 2wt7_A Proto-oncogene protein 93.8 0.55 1.9E-05 34.9 9.4 36 284-319 25-60 (63)
45 3m91_A Proteasome-associated A 93.8 0.22 7.5E-06 36.1 6.9 43 281-323 8-50 (51)
46 3m9b_A Proteasome-associated A 93.7 0.053 1.8E-06 51.0 4.5 42 275-316 54-95 (251)
47 2kz5_A Transcription factor NF 93.7 0.0056 1.9E-07 49.3 -1.9 25 251-275 63-87 (91)
48 3c3g_A Alpha/beta peptide with 93.6 0.09 3.1E-06 34.9 4.1 27 277-303 2-28 (33)
49 2v71_A Nuclear distribution pr 93.6 0.15 5.2E-06 46.0 7.1 26 310-337 95-120 (189)
50 3cve_A Homer protein homolog 1 93.5 0.22 7.5E-06 38.6 6.9 46 278-323 3-48 (72)
51 1hjb_A Ccaat/enhancer binding 93.3 0.58 2E-05 37.3 9.3 35 274-308 42-76 (87)
52 2zxx_A Geminin; coiled-coil, c 93.3 0.21 7.2E-06 39.4 6.6 35 289-323 34-68 (79)
53 2bni_A General control protein 93.3 0.097 3.3E-06 35.0 3.9 28 276-303 2-29 (34)
54 1uo4_A General control protein 93.3 0.097 3.3E-06 35.0 3.9 28 276-303 2-29 (34)
55 1nkp_B MAX protein, MYC proto- 93.2 0.33 1.1E-05 37.5 7.7 35 290-324 48-82 (83)
56 2yy0_A C-MYC-binding protein; 93.2 0.14 4.9E-06 37.2 5.1 32 283-321 20-51 (53)
57 2hy6_A General control protein 93.1 0.11 3.8E-06 34.7 3.9 29 276-304 2-30 (34)
58 1gu4_A CAAT/enhancer binding p 93.1 0.76 2.6E-05 35.9 9.4 27 276-302 44-70 (78)
59 2wvr_A Geminin; DNA replicatio 92.8 0.28 9.7E-06 44.8 7.6 29 290-318 116-144 (209)
60 1t6f_A Geminin; coiled-coil, c 92.8 0.16 5.6E-06 34.3 4.5 30 288-317 6-35 (37)
61 2yy0_A C-MYC-binding protein; 92.8 0.2 6.8E-06 36.5 5.3 21 278-298 29-49 (53)
62 2wq1_A General control protein 92.8 0.14 4.9E-06 33.9 4.1 27 277-303 2-28 (33)
63 2dfs_A Myosin-5A; myosin-V, in 92.6 0.68 2.3E-05 51.3 11.7 16 308-323 1028-1043(1080)
64 4h22_A Leucine-rich repeat fli 92.5 0.52 1.8E-05 38.8 8.0 47 275-321 37-83 (103)
65 1gd2_E Transcription factor PA 91.9 0.67 2.3E-05 35.5 7.7 31 277-307 38-68 (70)
66 1fmh_A General control protein 91.6 0.22 7.6E-06 32.3 3.9 30 276-305 2-31 (33)
67 1nkp_A C-MYC, MYC proto-oncoge 91.6 0.89 3E-05 35.9 8.3 35 290-324 53-87 (88)
68 3m9b_A Proteasome-associated A 91.4 0.19 6.6E-06 47.2 5.0 56 281-336 53-109 (251)
69 2dgc_A Protein (GCN4); basic d 91.3 0.84 2.9E-05 34.1 7.5 33 287-319 28-60 (63)
70 3nmd_A CGMP dependent protein 91.2 0.93 3.2E-05 35.1 7.7 23 276-298 41-63 (72)
71 2v4h_A NF-kappa-B essential mo 91.1 2.1 7.2E-05 35.6 10.3 57 262-318 32-91 (110)
72 1jnm_A Proto-oncogene C-JUN; B 91.0 1.7 5.7E-05 32.0 8.8 33 290-322 23-55 (62)
73 2xdj_A Uncharacterized protein 90.8 2.1 7.1E-05 33.7 9.7 55 276-330 21-75 (83)
74 4etp_A Kinesin-like protein KA 90.6 0.79 2.7E-05 45.3 8.7 53 273-325 8-60 (403)
75 1wt6_A Myotonin-protein kinase 90.5 3 0.0001 32.9 10.1 60 262-324 14-73 (81)
76 3u06_A Protein claret segregat 90.3 0.84 2.9E-05 45.3 8.7 52 274-325 9-60 (412)
77 2dfs_A Myosin-5A; myosin-V, in 90.3 0.86 2.9E-05 50.5 9.5 39 279-317 981-1019(1080)
78 3htk_A Structural maintenance 90.3 2 6.7E-05 31.0 8.5 48 273-320 10-57 (60)
79 3o0z_A RHO-associated protein 90.0 3.9 0.00013 36.3 11.7 47 258-304 73-119 (168)
80 1a93_B MAX protein, coiled coi 89.9 0.52 1.8E-05 31.5 4.6 29 294-322 5-33 (34)
81 1gmj_A ATPase inhibitor; coile 89.8 2.7 9.1E-05 33.4 9.5 23 300-322 55-77 (84)
82 3u1c_A Tropomyosin alpha-1 cha 89.8 6.7 0.00023 31.5 12.2 18 273-290 42-59 (101)
83 3i00_A HIP-I, huntingtin-inter 89.7 2.9 9.8E-05 35.1 10.2 47 269-315 34-80 (120)
84 2w83_C C-JUN-amino-terminal ki 89.6 0.55 1.9E-05 36.7 5.3 42 279-320 34-75 (77)
85 3q8t_A Beclin-1; autophagy, AT 89.5 1.6 5.5E-05 35.1 8.2 28 275-302 25-52 (96)
86 1wlq_A Geminin; coiled-coil; 2 89.4 1.6 5.3E-05 34.7 7.8 33 289-321 38-70 (83)
87 2v66_B Nuclear distribution pr 89.3 7.4 0.00025 32.3 12.2 22 279-300 7-28 (111)
88 3iv1_A Tumor susceptibility ge 89.3 4.6 0.00016 31.6 10.4 53 271-323 21-73 (78)
89 2r2v_A GCN4 leucine zipper; co 89.3 0.5 1.7E-05 31.6 4.1 28 276-303 2-29 (34)
90 3efg_A Protein SLYX homolog; x 89.2 1.2 4.2E-05 34.6 7.0 55 278-334 10-64 (78)
91 3jsv_C NF-kappa-B essential mo 88.9 3.2 0.00011 33.6 9.5 74 260-335 8-84 (94)
92 2j5u_A MREC protein; bacterial 88.3 0.2 6.8E-06 46.6 2.3 38 280-321 24-61 (255)
93 1nkp_B MAX protein, MYC proto- 88.2 0.57 2E-05 36.2 4.6 26 276-301 48-73 (83)
94 3a7o_A Autophagy protein 16; c 87.9 2.3 7.9E-05 32.9 7.6 47 277-323 27-73 (75)
95 1ic2_A Tropomyosin alpha chain 87.7 2.9 9.9E-05 32.2 8.3 47 274-320 26-72 (81)
96 1am9_A Srebp-1A, protein (ster 87.6 5 0.00017 31.0 9.6 67 257-323 5-77 (82)
97 2eqb_B RAB guanine nucleotide 87.6 2.8 9.5E-05 34.1 8.4 25 298-322 71-95 (97)
98 3nmd_A CGMP dependent protein 87.5 0.96 3.3E-05 35.0 5.3 30 294-323 38-67 (72)
99 1nlw_A MAD protein, MAX dimeri 87.5 1 3.5E-05 35.0 5.6 30 292-321 50-79 (80)
100 4emc_A Monopolin complex subun 87.5 0.96 3.3E-05 40.9 6.1 38 282-319 20-57 (190)
101 3ghg_A Fibrinogen alpha chain; 87.4 1.2 4E-05 45.9 7.4 14 250-263 59-72 (562)
102 1ic2_A Tropomyosin alpha chain 87.3 8.4 0.00029 29.6 11.7 53 271-323 16-68 (81)
103 3ghg_A Fibrinogen alpha chain; 87.1 1.6 5.4E-05 45.0 8.2 46 272-317 107-152 (562)
104 3s9g_A Protein hexim1; cyclin 87.1 3.5 0.00012 33.8 8.6 26 275-300 65-90 (104)
105 1dh3_A Transcription factor CR 87.0 2.1 7.1E-05 31.1 6.6 26 298-323 24-49 (55)
106 2lw1_A ABC transporter ATP-bin 86.9 1.9 6.5E-05 33.8 6.9 49 274-322 21-75 (89)
107 3o0z_A RHO-associated protein 86.7 8.4 0.00029 34.1 11.7 50 269-320 30-79 (168)
108 4ani_A Protein GRPE; chaperone 86.5 1.1 3.7E-05 41.1 6.1 59 277-335 61-119 (213)
109 3swy_A Cyclic nucleotide-gated 86.4 2.9 9.9E-05 29.7 6.9 42 279-323 2-43 (46)
110 2fxo_A Myosin heavy chain, car 86.3 6.9 0.00024 32.6 10.5 47 277-323 64-110 (129)
111 3u1c_A Tropomyosin alpha-1 cha 86.3 12 0.00039 30.1 12.4 57 263-319 18-74 (101)
112 4h22_A Leucine-rich repeat fli 86.2 2.2 7.5E-05 35.1 7.1 49 276-324 31-79 (103)
113 3mq9_A Bone marrow stromal ant 86.1 6 0.00021 38.6 11.6 24 298-321 445-468 (471)
114 2xdj_A Uncharacterized protein 86.0 4 0.00014 32.1 8.4 42 271-312 23-64 (83)
115 1jcd_A Major outer membrane li 86.0 4.4 0.00015 29.4 7.8 44 276-319 5-48 (52)
116 3mq7_A Bone marrow stromal ant 85.9 14 0.0005 30.9 12.5 44 279-322 61-104 (121)
117 4b4t_K 26S protease regulatory 85.9 1.3 4.3E-05 44.2 6.7 47 278-324 45-91 (428)
118 3u59_A Tropomyosin beta chain; 85.7 3.8 0.00013 32.8 8.3 14 276-289 45-58 (101)
119 3cve_A Homer protein homolog 1 85.7 3.4 0.00012 31.9 7.6 49 275-323 21-69 (72)
120 3s4r_A Vimentin; alpha-helix, 85.7 9.3 0.00032 30.4 10.5 26 292-317 59-84 (93)
121 3he5_B Synzip2; heterodimeric 85.7 3.5 0.00012 29.1 6.9 31 286-316 14-44 (52)
122 1wt6_A Myotonin-protein kinase 85.5 5.4 0.00018 31.5 8.7 52 260-311 23-74 (81)
123 3trt_A Vimentin; cytoskeleton, 85.3 10 0.00034 28.5 11.0 57 257-316 20-76 (77)
124 3htk_A Structural maintenance 85.2 5.3 0.00018 28.6 8.2 47 277-323 7-53 (60)
125 3na7_A HP0958; flagellar bioge 85.1 9.1 0.00031 35.0 11.7 31 278-308 93-123 (256)
126 3cvf_A Homer-3, homer protein 85.0 3.7 0.00012 32.2 7.6 47 276-322 28-74 (79)
127 4dzn_A Coiled-coil peptide CC- 84.8 1.9 6.6E-05 27.9 4.8 25 292-316 5-29 (33)
128 3u59_A Tropomyosin beta chain; 84.8 13 0.00046 29.5 12.2 52 265-316 20-71 (101)
129 1nkp_A C-MYC, MYC proto-oncoge 84.7 1.8 6.3E-05 34.1 5.9 32 284-315 54-85 (88)
130 3na7_A HP0958; flagellar bioge 84.5 6.8 0.00023 35.9 10.5 41 276-316 33-73 (256)
131 1dip_A Delta-sleep-inducing pe 84.4 0.57 2E-05 36.5 2.7 42 290-335 16-57 (78)
132 4etp_A Kinesin-like protein KA 84.2 1.7 5.8E-05 42.9 6.7 50 273-322 15-64 (403)
133 3a7p_A Autophagy protein 16; c 84.2 7.9 0.00027 33.8 10.1 58 253-310 73-131 (152)
134 1gmj_A ATPase inhibitor; coile 83.5 7.9 0.00027 30.7 8.9 26 290-315 52-77 (84)
135 3swf_A CGMP-gated cation chann 83.3 2.8 9.6E-05 32.6 6.1 43 278-323 3-45 (74)
136 3q8t_A Beclin-1; autophagy, AT 83.2 16 0.00054 29.2 12.3 66 257-322 28-93 (96)
137 2xv5_A Lamin-A/C; structural p 82.9 6.9 0.00024 30.1 8.3 48 271-318 8-55 (74)
138 2ve7_C Kinetochore protein NUF 82.9 1.7 5.7E-05 40.5 5.7 59 253-311 119-184 (250)
139 1lwu_C Fibrinogen gamma chain; 82.7 2.8 9.4E-05 40.6 7.3 48 275-322 12-59 (323)
140 3oja_A Leucine-rich immune mol 82.6 13 0.00044 36.4 12.3 44 278-321 424-467 (487)
141 2v4h_A NF-kappa-B essential mo 82.5 17 0.00058 30.1 10.9 47 276-322 63-109 (110)
142 2v71_A Nuclear distribution pr 82.3 16 0.00056 32.8 11.7 22 280-301 93-114 (189)
143 1nlw_A MAD protein, MAX dimeri 82.3 3 0.0001 32.3 6.1 34 274-307 46-79 (80)
144 3s4r_A Vimentin; alpha-helix, 82.1 6.5 0.00022 31.3 8.1 31 275-305 56-86 (93)
145 1go4_E MAD1 (mitotic arrest de 82.1 1.9 6.5E-05 35.2 5.0 28 276-303 13-40 (100)
146 3ra3_A P1C; coiled coil domain 82.1 0.89 3.1E-05 28.5 2.3 25 285-309 3-27 (28)
147 2wuj_A Septum site-determining 82.0 1.3 4.5E-05 32.3 3.7 27 276-302 28-54 (57)
148 1g6u_A Domain swapped dimer; d 81.9 5.8 0.0002 27.6 6.6 27 297-323 21-47 (48)
149 3bas_A Myosin heavy chain, str 81.8 17 0.00057 28.5 12.1 52 272-323 32-83 (89)
150 4ati_A MITF, microphthalmia-as 81.8 4 0.00014 33.8 7.1 70 254-323 23-111 (118)
151 3i00_A HIP-I, huntingtin-inter 81.8 9.2 0.00032 32.0 9.3 47 277-323 35-81 (120)
152 1joc_A EEA1, early endosomal a 81.6 9.6 0.00033 31.6 9.4 48 275-322 11-58 (125)
153 3oja_A Leucine-rich immune mol 81.2 14 0.00047 36.2 11.9 30 275-304 435-464 (487)
154 2ve7_C Kinetochore protein NUF 81.2 0.6 2.1E-05 43.5 2.0 33 287-319 146-178 (250)
155 1gk6_A Vimentin; intermediate 80.9 4.4 0.00015 29.7 6.2 44 278-321 3-46 (59)
156 2xv5_A Lamin-A/C; structural p 80.9 9.8 0.00033 29.2 8.4 49 275-323 5-53 (74)
157 3he5_B Synzip2; heterodimeric 80.5 5.6 0.00019 28.1 6.3 35 278-312 13-47 (52)
158 1am9_A Srebp-1A, protein (ster 80.4 2.5 8.5E-05 32.8 5.0 27 275-301 50-76 (82)
159 3iv1_A Tumor susceptibility ge 80.3 14 0.00047 28.9 9.1 54 270-323 13-66 (78)
160 2fxo_A Myosin heavy chain, car 80.1 16 0.00056 30.2 10.4 44 279-322 80-123 (129)
161 1x8y_A Lamin A/C; structural p 80.0 19 0.00066 28.0 10.1 50 273-322 26-75 (86)
162 2xzr_A Immunoglobulin-binding 79.8 24 0.00081 28.9 10.8 65 257-321 34-101 (114)
163 1jcd_A Major outer membrane li 79.6 7.2 0.00025 28.2 6.9 40 282-321 4-43 (52)
164 3trt_A Vimentin; cytoskeleton, 79.4 14 0.00048 27.7 8.9 44 281-324 34-77 (77)
165 1wlq_A Geminin; coiled-coil; 2 79.2 11 0.00038 29.8 8.4 42 278-323 41-82 (83)
166 3qne_A Seryl-tRNA synthetase, 79.0 8 0.00027 39.3 9.6 52 270-321 42-103 (485)
167 1p9i_A Cortexillin I/GCN4 hybr 79.0 2.7 9.4E-05 26.9 3.9 23 279-301 3-25 (31)
168 2dq0_A Seryl-tRNA synthetase; 78.6 9.1 0.00031 38.3 9.8 28 294-321 74-101 (455)
169 1fmh_B General control protein 78.6 3.6 0.00012 26.6 4.4 30 276-305 2-31 (33)
170 2lz1_A Nuclear factor erythroi 78.6 0.047 1.6E-06 43.9 -5.4 24 251-274 63-86 (90)
171 1wle_A Seryl-tRNA synthetase; 78.6 14 0.00048 37.6 11.2 27 294-320 121-147 (501)
172 3ra3_B P2F; coiled coil domain 78.0 1.8 6.2E-05 27.1 2.8 16 287-302 5-20 (28)
173 1a93_B MAX protein, coiled coi 77.8 3.4 0.00012 27.6 4.2 24 290-313 8-31 (34)
174 2oxj_A Hybrid alpha/beta pepti 77.6 4.7 0.00016 26.9 4.8 27 293-319 5-31 (34)
175 3lay_A Zinc resistance-associa 77.3 16 0.00056 32.2 10.0 20 297-316 114-133 (175)
176 3ol1_A Vimentin; structural ge 77.3 29 0.00098 28.5 12.1 36 287-322 67-102 (119)
177 1hlo_A Protein (transcription 76.8 5.4 0.00018 30.5 5.9 24 264-287 18-41 (80)
178 3u06_A Protein claret segregat 76.6 4.5 0.00016 40.1 6.8 47 275-321 17-63 (412)
179 3qh9_A Liprin-beta-2; coiled-c 76.5 14 0.00047 29.1 8.1 37 274-310 25-61 (81)
180 1dip_A Delta-sleep-inducing pe 76.2 1.6 5.4E-05 34.0 2.7 25 277-301 17-41 (78)
181 2ve7_A Kinetochore protein HEC 76.1 3.4 0.00012 39.4 5.6 28 283-310 186-213 (315)
182 1ses_A Seryl-tRNA synthetase; 75.8 28 0.00097 34.3 12.3 31 292-322 67-97 (421)
183 4e61_A Protein BIM1; EB1-like 75.6 11 0.00038 31.0 7.8 29 276-304 12-40 (106)
184 1gk4_A Vimentin; intermediate 75.4 26 0.00088 27.0 11.7 54 269-322 20-73 (84)
185 4emc_A Monopolin complex subun 75.1 7.9 0.00027 34.9 7.3 25 279-303 24-48 (190)
186 1uix_A RHO-associated kinase; 75.0 8 0.00027 29.8 6.3 32 280-311 2-33 (71)
187 3oa7_A Head morphogenesis prot 74.8 8.9 0.0003 34.9 7.6 44 284-327 32-75 (206)
188 3a5t_A Transcription factor MA 74.7 0.63 2.2E-05 38.5 0.0 34 290-323 59-92 (107)
189 1wle_A Seryl-tRNA synthetase; 74.5 25 0.00086 35.7 11.8 66 270-337 79-155 (501)
190 3qh9_A Liprin-beta-2; coiled-c 74.0 16 0.00055 28.7 7.9 43 277-319 35-77 (81)
191 1fzc_C Fibrin; blood coagulati 74.0 1.2 4.1E-05 43.0 1.9 48 275-322 4-51 (319)
192 2oa5_A Hypothetical protein BQ 74.0 1.7 5.9E-05 36.1 2.5 26 275-300 8-33 (110)
193 3w03_C DNA repair protein XRCC 73.9 7.6 0.00026 34.8 6.9 32 276-307 146-177 (184)
194 1s1c_X RHO-associated, coiled- 73.9 9.5 0.00032 29.3 6.5 43 279-321 3-46 (71)
195 4dzn_A Coiled-coil peptide CC- 73.6 8.6 0.0003 24.9 5.2 23 279-301 6-28 (33)
196 3vkg_A Dynein heavy chain, cyt 73.5 13 0.00045 45.8 10.7 31 290-320 2036-2066(3245)
197 3mq9_A Bone marrow stromal ant 73.2 39 0.0013 32.8 12.5 30 294-323 434-463 (471)
198 1lwu_C Fibrinogen gamma chain; 73.1 7.9 0.00027 37.4 7.3 27 276-302 27-53 (323)
199 1gk7_A Vimentin; intermediate 73.0 7.2 0.00025 26.5 5.1 28 294-321 11-38 (39)
200 3w03_C DNA repair protein XRCC 73.0 9.5 0.00033 34.2 7.3 24 278-301 155-178 (184)
201 3a2a_A Voltage-gated hydrogen 73.0 10 0.00035 27.9 6.1 26 277-302 20-45 (58)
202 4b4t_K 26S protease regulatory 72.7 6.3 0.00021 39.2 6.7 43 275-317 49-91 (428)
203 2wvr_A Geminin; DNA replicatio 72.5 18 0.0006 33.1 8.9 59 275-337 115-175 (209)
204 1kd8_B GABH BLL, GCN4 acid bas 72.4 8.6 0.00029 25.9 5.1 28 293-320 5-32 (36)
205 3mov_A Lamin-B1; LMNB1, B-type 72.4 30 0.001 27.6 9.5 48 275-322 37-84 (95)
206 2oto_A M protein; helical coil 72.1 16 0.00053 31.1 8.3 32 277-308 52-83 (155)
207 2zqm_A Prefoldin beta subunit 71.9 13 0.00046 29.4 7.4 39 286-324 74-112 (117)
208 1m1j_A Fibrinogen alpha subuni 71.7 40 0.0014 34.3 12.1 45 275-319 111-155 (491)
209 3bbp_D GRIP and coiled-coil do 71.6 3.1 0.0001 32.0 3.2 21 302-322 42-62 (71)
210 3m0d_C TNF receptor-associated 71.5 28 0.00096 25.7 8.6 50 274-323 5-54 (65)
211 1zxa_A CGMP-dependent protein 71.4 5.9 0.0002 30.2 4.7 35 271-305 21-55 (67)
212 3hhm_B NISH2 P85alpha; PI3KCA, 71.1 14 0.00047 36.2 8.6 54 271-324 201-254 (373)
213 4gkw_A Spindle assembly abnorm 71.0 50 0.0017 28.4 12.1 29 297-325 134-162 (167)
214 1deq_A Fibrinogen (alpha chain 71.0 9.6 0.00033 37.8 7.4 45 275-319 113-157 (390)
215 1m1j_C Fibrinogen gamma chain; 70.9 3.1 0.00011 41.5 4.0 44 280-323 89-132 (409)
216 3m48_A General control protein 70.6 5.3 0.00018 26.5 3.7 24 294-317 5-28 (33)
217 1gk6_A Vimentin; intermediate 70.4 27 0.00093 25.3 8.1 47 274-320 6-52 (59)
218 2fic_A Bridging integrator 1; 70.3 16 0.00055 32.6 8.4 26 294-322 184-209 (251)
219 1zme_C Proline utilization tra 70.1 3.8 0.00013 29.6 3.4 25 274-298 43-67 (70)
220 1p9i_A Cortexillin I/GCN4 hybr 69.9 4.3 0.00015 25.9 3.1 23 301-323 4-26 (31)
221 1fxk_C Protein (prefoldin); ar 69.8 19 0.00065 29.4 8.1 31 278-308 98-128 (133)
222 2ocy_A RAB guanine nucleotide 69.5 39 0.0013 29.4 10.2 25 300-324 105-129 (154)
223 3c3g_A Alpha/beta peptide with 69.4 8.3 0.00028 25.5 4.5 27 293-319 4-30 (33)
224 3lss_A Seryl-tRNA synthetase; 69.4 22 0.00076 36.0 10.0 23 298-320 113-135 (484)
225 3mud_A DNA repair protein XRCC 69.2 16 0.00054 32.6 7.8 35 278-312 131-165 (175)
226 2b5u_A Colicin E3; high resolu 68.5 22 0.00074 36.6 9.5 23 264-286 317-339 (551)
227 2xus_A Breast cancer metastasi 68.0 16 0.00054 26.2 6.1 39 271-315 6-44 (49)
228 1ses_A Seryl-tRNA synthetase; 67.8 30 0.001 34.1 10.4 37 299-337 67-103 (421)
229 1kd8_A GABH AIV, GCN4 acid bas 67.3 13 0.00044 25.1 5.1 27 294-320 6-32 (36)
230 3viq_B Mating-type switching p 67.0 34 0.0012 27.1 8.5 51 275-325 8-70 (85)
231 3qwe_A GMIP, GEM-interacting p 66.7 52 0.0018 31.1 11.3 76 258-334 126-221 (279)
232 1l8d_A DNA double-strand break 66.6 20 0.00068 28.4 7.3 34 287-320 69-102 (112)
233 3c3f_A Alpha/beta peptide with 66.4 10 0.00035 25.2 4.5 26 294-319 6-31 (34)
234 4b4t_M 26S protease regulatory 66.2 5.8 0.0002 39.5 4.9 46 279-324 29-74 (434)
235 2w83_C C-JUN-amino-terminal ki 65.9 35 0.0012 26.6 8.1 44 280-323 7-57 (77)
236 1uii_A Geminin; human, DNA rep 65.9 20 0.00068 28.3 6.9 28 276-303 47-74 (83)
237 2akf_A Coronin-1A; coiled coil 65.8 14 0.00046 24.0 4.8 27 279-305 3-29 (32)
238 3uux_B Mitochondrial division 65.5 23 0.00079 33.0 8.4 51 274-324 176-226 (242)
239 3qne_A Seryl-tRNA synthetase, 65.2 31 0.001 35.1 10.0 12 286-297 51-62 (485)
240 3he4_A Synzip6; heterodimeric 65.1 8.6 0.00029 27.5 4.2 36 276-311 18-53 (56)
241 3v86_A De novo design helix; c 65.1 6.5 0.00022 24.4 3.1 19 280-298 5-23 (27)
242 3q0x_A Centriole protein; cent 65.1 11 0.00039 34.7 6.2 41 276-316 179-219 (228)
243 2wuj_A Septum site-determining 64.8 6.5 0.00022 28.5 3.7 25 299-323 30-54 (57)
244 2ke4_A CDC42-interacting prote 64.8 32 0.0011 27.6 8.2 30 294-323 60-89 (98)
245 1lq7_A Alpha3W; three helix bu 64.4 17 0.00057 26.8 5.8 11 279-289 6-16 (67)
246 3tnu_A Keratin, type I cytoske 64.4 60 0.002 26.8 12.2 48 275-322 77-124 (131)
247 1fmh_A General control protein 64.3 8 0.00027 25.0 3.5 24 299-322 4-27 (33)
248 2eqb_B RAB guanine nucleotide 63.8 57 0.002 26.4 12.2 44 279-322 16-59 (97)
249 2i1j_A Moesin; FERM, coiled-co 63.7 5.3 0.00018 41.1 4.2 46 276-321 336-381 (575)
250 3plt_A Sphingolipid long chain 63.5 45 0.0016 30.9 10.0 27 254-280 93-120 (234)
251 3tnu_A Keratin, type I cytoske 63.1 53 0.0018 27.1 9.5 15 305-319 86-100 (131)
252 1m1j_B Fibrinogen beta chain; 62.9 77 0.0026 32.1 12.3 16 251-266 103-118 (464)
253 2dq0_A Seryl-tRNA synthetase; 62.9 37 0.0013 33.9 10.1 62 274-337 44-108 (455)
254 4ath_A MITF, microphthalmia-as 62.8 13 0.00045 29.3 5.3 30 275-304 49-78 (83)
255 1uo4_A General control protein 62.7 10 0.00034 25.3 3.9 24 294-317 6-29 (34)
256 2zxx_A Geminin; coiled-coil, c 62.6 46 0.0016 26.0 8.3 39 280-322 39-77 (79)
257 3tnu_B Keratin, type II cytosk 62.3 65 0.0022 26.5 12.2 46 277-322 77-122 (129)
258 1fxk_A Prefoldin; archaeal pro 62.3 19 0.00065 28.1 6.4 35 287-321 70-104 (107)
259 2wq1_A General control protein 62.2 17 0.00057 24.1 4.8 27 293-319 4-30 (33)
260 4e61_A Protein BIM1; EB1-like 62.0 41 0.0014 27.7 8.4 30 282-311 11-40 (106)
261 2oto_A M protein; helical coil 61.8 34 0.0012 29.0 8.4 25 277-301 59-83 (155)
262 2b5u_A Colicin E3; high resolu 61.7 82 0.0028 32.4 12.2 30 277-306 316-345 (551)
263 2zvf_A Alanyl-tRNA synthetase; 61.7 5.8 0.0002 33.6 3.4 29 279-307 29-57 (171)
264 2bni_A General control protein 61.5 12 0.00041 25.0 4.1 25 294-318 6-30 (34)
265 2q6q_A Spindle POLE BODY compo 60.6 48 0.0017 25.4 7.9 31 292-322 27-57 (74)
266 3e98_A GAF domain of unknown f 60.4 17 0.00057 33.5 6.6 13 290-302 97-109 (252)
267 3tq2_A KE1; parallel three hel 60.2 23 0.0008 23.2 5.2 31 292-322 4-34 (36)
268 2ocy_A RAB guanine nucleotide 60.1 60 0.002 28.2 9.6 22 301-322 113-134 (154)
269 4dk0_A Putative MACA; alpha-ha 59.9 44 0.0015 31.0 9.5 23 298-320 124-146 (369)
270 2xu6_A MDV1 coiled coil; prote 59.7 24 0.00081 27.2 6.1 49 275-323 21-69 (72)
271 3ol1_A Vimentin; structural ge 59.4 72 0.0025 26.1 11.4 37 279-315 66-102 (119)
272 1x8y_A Lamin A/C; structural p 59.4 60 0.002 25.1 8.8 50 271-320 31-80 (86)
273 2z5i_A TM, general control pro 59.3 17 0.00058 26.0 5.0 28 278-305 8-35 (52)
274 3he4_A Synzip6; heterodimeric 59.2 3.5 0.00012 29.5 1.3 45 278-322 6-50 (56)
275 4fla_A Regulation of nuclear P 59.2 83 0.0029 27.0 10.4 31 274-304 85-115 (152)
276 2hy6_A General control protein 58.4 23 0.00077 23.6 5.0 27 293-319 5-31 (34)
277 1ik9_A DNA repair protein XRCC 58.3 36 0.0012 30.8 8.3 32 279-310 136-167 (213)
278 2dq3_A Seryl-tRNA synthetase; 58.2 18 0.00062 35.7 6.8 29 294-322 73-101 (425)
279 2w6a_A ARF GTPase-activating p 58.2 55 0.0019 24.4 8.4 15 291-305 43-57 (63)
280 3q0x_A Centriole protein; cent 58.2 37 0.0013 31.3 8.4 42 279-320 175-216 (228)
281 2l5g_B Putative uncharacterize 58.0 21 0.00071 24.9 5.0 29 294-322 7-35 (42)
282 3jsv_C NF-kappa-B essential mo 57.9 66 0.0023 25.9 8.7 48 275-322 40-87 (94)
283 3mtu_A Tropomyosin alpha-1 cha 57.2 19 0.00065 27.5 5.3 46 276-321 17-62 (75)
284 2odv_A Plectin 1, HD1; plakin 57.2 1.1E+02 0.0036 27.9 11.3 39 250-288 99-137 (235)
285 1m1j_C Fibrinogen gamma chain; 56.8 27 0.00092 34.7 7.7 48 274-321 90-137 (409)
286 2oa5_A Hypothetical protein BQ 56.8 6 0.0002 32.9 2.5 24 298-321 10-33 (110)
287 3ghg_C Fibrinogen gamma chain; 56.8 11 0.00038 37.6 4.9 47 274-320 90-136 (411)
288 2q6q_A Spindle POLE BODY compo 56.7 64 0.0022 24.7 8.3 44 279-322 7-50 (74)
289 2j5u_A MREC protein; bacterial 56.6 4.8 0.00016 37.2 2.2 21 286-306 23-43 (255)
290 4ath_A MITF, microphthalmia-as 56.5 26 0.00089 27.6 6.0 39 274-323 38-76 (83)
291 3viq_B Mating-type switching p 56.4 14 0.00046 29.4 4.4 26 278-303 4-29 (85)
292 1joc_A EEA1, early endosomal a 56.4 38 0.0013 27.9 7.5 34 276-309 19-52 (125)
293 3sjb_C Golgi to ER traffic pro 56.2 52 0.0018 26.5 7.8 21 294-314 54-74 (93)
294 3k29_A Putative uncharacterize 56.2 1.1E+02 0.0037 27.1 12.3 42 280-321 83-124 (169)
295 2zvf_A Alanyl-tRNA synthetase; 56.0 14 0.00047 31.3 4.8 30 293-322 29-58 (171)
296 2yko_A LINE-1 ORF1P; RNA-bindi 55.9 19 0.00065 33.4 6.0 39 277-315 8-46 (233)
297 3ni0_A Bone marrow stromal ant 55.8 77 0.0026 25.7 8.8 28 302-329 66-93 (99)
298 3okq_A BUD site selection prot 55.7 97 0.0033 26.6 10.0 57 263-319 9-77 (141)
299 2r2v_A GCN4 leucine zipper; co 55.6 26 0.00088 23.3 4.9 28 293-320 5-32 (34)
300 2er8_A Regulatory protein Leu3 55.3 6.3 0.00021 28.7 2.2 22 274-295 48-69 (72)
301 1fxk_A Prefoldin; archaeal pro 55.3 37 0.0013 26.4 6.9 32 292-323 68-99 (107)
302 1gk4_A Vimentin; intermediate 55.3 55 0.0019 25.2 7.8 48 273-320 31-78 (84)
303 2zqm_A Prefoldin beta subunit 55.2 74 0.0025 24.9 12.6 32 292-323 73-104 (117)
304 2wg5_A General control protein 55.1 9.1 0.00031 31.1 3.4 39 299-337 10-49 (109)
305 1ytz_T Troponin T; muscle, THI 55.0 85 0.0029 25.6 11.3 36 287-322 47-89 (107)
306 2pnv_A Small conductance calci 54.8 16 0.00054 25.5 4.0 16 283-298 17-32 (43)
307 3a7o_A Autophagy protein 16; c 54.6 35 0.0012 26.3 6.3 44 273-316 30-73 (75)
308 1x4t_A Hypothetical protein LO 54.5 36 0.0012 27.4 6.6 54 275-329 32-85 (92)
309 3q4f_C DNA repair protein XRCC 54.4 23 0.00078 31.8 6.0 21 283-303 162-182 (186)
310 2wg5_A General control protein 54.1 11 0.00038 30.6 3.7 23 285-307 10-32 (109)
311 3onj_A T-snare VTI1; helix, HA 53.7 61 0.0021 25.5 8.0 48 276-323 42-93 (97)
312 2no2_A HIP-I, huntingtin-inter 53.3 89 0.0031 25.3 11.5 37 287-323 59-95 (107)
313 2zdi_C Prefoldin subunit alpha 53.2 28 0.00096 29.2 6.3 24 278-301 108-131 (151)
314 1ytz_T Troponin T; muscle, THI 53.1 37 0.0013 27.8 6.7 42 274-315 48-89 (107)
315 1t3j_A Mitofusin 1; coiled coi 53.0 45 0.0016 26.9 7.1 41 278-322 50-90 (96)
316 2aze_A Transcription factor DP 52.8 35 0.0012 29.8 6.9 15 271-285 22-36 (155)
317 2z5i_A TM, general control pro 52.6 53 0.0018 23.4 6.7 40 282-321 5-44 (52)
318 1l8d_A DNA double-strand break 52.6 82 0.0028 24.7 11.2 52 272-323 28-98 (112)
319 3gp4_A Transcriptional regulat 51.9 53 0.0018 27.4 7.8 30 280-309 86-115 (142)
320 4a3a_A Amphiphysin; structural 51.9 56 0.0019 29.7 8.5 50 270-322 139-195 (243)
321 1fxk_C Protein (prefoldin); ar 51.8 47 0.0016 27.0 7.3 40 278-317 91-130 (133)
322 1deq_A Fibrinogen (alpha chain 51.7 95 0.0033 30.8 10.5 15 250-264 62-76 (390)
323 1lrz_A FEMA, factor essential 51.6 44 0.0015 32.3 8.2 21 275-295 247-267 (426)
324 4ani_A Protein GRPE; chaperone 51.6 31 0.0011 31.4 6.7 29 275-303 73-101 (213)
325 3fpp_A Macrolide-specific effl 51.1 85 0.0029 28.7 9.8 27 296-322 121-147 (341)
326 3ljm_A Coil Ser L9C; de novo d 50.7 23 0.00078 22.6 3.9 22 301-322 6-27 (31)
327 4b4t_J 26S protease regulatory 50.2 17 0.00059 35.9 5.1 56 275-337 25-81 (405)
328 3sja_C Golgi to ER traffic pro 50.1 47 0.0016 25.0 6.3 22 299-320 35-56 (65)
329 1yke_B RNA polymerase II holoe 50.0 32 0.0011 29.6 6.2 29 282-310 92-120 (151)
330 1ykh_B RNA polymerase II holoe 50.0 34 0.0012 28.7 6.2 26 282-307 92-117 (132)
331 2qyw_A Vesicle transport throu 49.9 82 0.0028 25.0 8.2 31 271-301 45-75 (102)
332 1j1d_C Troponin I, TNI; THIN f 49.9 40 0.0014 28.7 6.6 16 309-324 92-107 (133)
333 3he4_B Synzip5; heterodimeric 49.6 60 0.0021 22.3 6.6 18 278-295 6-23 (46)
334 3plt_A Sphingolipid long chain 49.4 84 0.0029 29.1 9.2 47 275-321 131-179 (234)
335 3vmx_A Voltage-gated hydrogen 49.3 69 0.0024 22.8 7.2 29 275-303 11-39 (48)
336 3rrk_A V-type ATPase 116 kDa s 49.0 35 0.0012 32.0 6.9 35 277-311 94-128 (357)
337 3lay_A Zinc resistance-associa 49.0 62 0.0021 28.5 8.0 15 291-305 115-129 (175)
338 2dq3_A Seryl-tRNA synthetase; 48.8 1.3E+02 0.0043 29.6 11.1 34 302-337 74-107 (425)
339 1lwu_B Fibrinogen beta chain; 48.7 25 0.00086 33.8 5.9 26 294-319 33-58 (323)
340 3m0a_A TNF receptor-associated 48.6 74 0.0025 23.0 8.1 28 281-308 11-38 (66)
341 3iox_A AGI/II, PA; alpha helix 48.5 51 0.0017 33.7 8.2 30 277-306 36-65 (497)
342 2lw1_A ABC transporter ATP-bin 48.1 54 0.0018 25.3 6.7 48 275-322 29-82 (89)
343 3l4q_C Phosphatidylinositol 3- 48.1 61 0.0021 28.6 7.8 45 278-322 113-157 (170)
344 3lss_A Seryl-tRNA synthetase; 48.0 1.3E+02 0.0043 30.5 11.1 34 302-337 109-143 (484)
345 2ve7_A Kinetochore protein HEC 47.7 34 0.0012 32.5 6.6 33 274-306 184-216 (315)
346 1a93_A Coiled coil, LZ, MYC pr 47.4 34 0.0012 22.7 4.6 26 297-322 8-33 (34)
347 3gp4_A Transcriptional regulat 47.3 1.2E+02 0.0041 25.1 9.3 27 284-310 83-109 (142)
348 2l5g_B Putative uncharacterize 47.0 43 0.0015 23.3 5.2 33 278-310 5-37 (42)
349 4dk0_A Putative MACA; alpha-ha 45.9 39 0.0013 31.4 6.6 36 286-321 119-154 (369)
350 4dzo_A Mitotic spindle assembl 45.8 50 0.0017 27.4 6.6 27 275-301 4-30 (123)
351 2yo3_A General control protein 45.8 57 0.0019 30.8 7.6 51 269-319 210-260 (268)
352 1j1d_B Troponin T, TNT; THIN f 45.8 42 0.0015 27.4 6.0 23 286-308 46-68 (106)
353 3rrk_A V-type ATPase 116 kDa s 45.7 67 0.0023 30.1 8.3 28 277-304 228-255 (357)
354 2xnx_M M protein, M1-BC1; cell 45.5 1.2E+02 0.0042 26.1 9.0 36 295-330 79-114 (146)
355 2no2_A HIP-I, huntingtin-inter 45.4 1.2E+02 0.0041 24.5 12.2 53 272-324 51-103 (107)
356 4b4t_J 26S protease regulatory 45.3 34 0.0012 33.9 6.3 27 281-307 38-64 (405)
357 3k66_A Beta-amyloid-like prote 45.0 1.1E+02 0.0039 28.3 9.4 51 274-324 37-92 (239)
358 3vp9_A General transcriptional 45.0 92 0.0032 24.9 7.7 45 279-323 40-88 (92)
359 3ra3_A P1C; coiled coil domain 44.7 11 0.00038 23.5 1.7 12 287-298 12-23 (28)
360 2p22_A Suppressor protein STP2 44.3 39 0.0013 29.9 5.9 28 290-317 57-84 (174)
361 3u0c_A Invasin IPAB, 62 kDa an 44.3 1.7E+02 0.0059 26.0 10.1 77 248-324 65-145 (201)
362 2yko_A LINE-1 ORF1P; RNA-bindi 44.2 47 0.0016 30.8 6.7 47 277-323 1-47 (233)
363 3mov_A Lamin-B1; LMNB1, B-type 44.1 1.2E+02 0.004 24.1 8.2 48 272-319 41-88 (95)
364 1tu3_F RAB GTPase binding effe 43.2 40 0.0014 26.2 5.1 23 314-336 44-66 (79)
365 1d7m_A Cortexillin I; coiled-c 43.2 1.3E+02 0.0044 24.2 8.3 44 264-307 14-57 (101)
366 2gkw_A TNF receptor-associated 43.1 38 0.0013 29.3 5.7 33 278-310 3-35 (192)
367 3q4f_C DNA repair protein XRCC 42.5 40 0.0014 30.2 5.7 25 274-298 160-184 (186)
368 4b4t_L 26S protease subunit RP 42.4 25 0.00086 35.0 4.9 29 296-324 72-100 (437)
369 2j69_A Bacterial dynamin-like 42.1 73 0.0025 33.1 8.6 41 281-321 351-391 (695)
370 4dci_A Uncharacterized protein 41.7 1.2E+02 0.0039 26.3 8.4 17 276-292 44-60 (150)
371 2l5g_A GPS2 protein, G protein 41.6 42 0.0014 22.8 4.3 20 289-308 15-34 (38)
372 2b9c_A Striated-muscle alpha t 41.6 1.6E+02 0.0056 25.0 11.5 70 254-323 37-121 (147)
373 4b4t_L 26S protease subunit RP 41.4 27 0.00091 34.8 4.9 28 289-316 72-99 (437)
374 2e7s_A RAB guanine nucleotide 41.3 29 0.00099 29.7 4.4 22 302-323 95-116 (135)
375 2aze_A Transcription factor DP 41.3 69 0.0023 28.0 6.9 9 307-315 40-48 (155)
376 2aze_B Transcription factor E2 40.7 46 0.0016 26.9 5.4 31 279-309 10-40 (106)
377 1zxa_A CGMP-dependent protein 40.7 40 0.0014 25.5 4.7 14 309-322 38-51 (67)
378 3n7n_E Monopolin complex subun 40.4 5.9 0.0002 32.0 0.0 32 286-317 40-71 (95)
379 4h10_A ARYL hydrocarbon recept 40.3 60 0.002 24.6 5.7 34 254-287 5-38 (73)
380 4fm3_A Uncharacterized hypothe 40.2 93 0.0032 25.1 7.1 40 273-312 55-94 (98)
381 2pnv_A Small conductance calci 39.9 38 0.0013 23.6 4.0 16 287-302 14-29 (43)
382 2xzr_A Immunoglobulin-binding 39.8 1.5E+02 0.0051 24.2 8.2 48 273-320 60-107 (114)
383 1j1d_C Troponin I, TNI; THIN f 39.7 1.1E+02 0.0038 25.9 7.9 45 274-318 64-108 (133)
384 3tq7_B Microtubule-associated 39.7 54 0.0018 25.7 5.4 47 275-321 8-54 (82)
385 1vcs_A Vesicle transport throu 39.6 1.3E+02 0.0044 23.8 7.9 23 301-323 72-94 (102)
386 2lq4_p Lysophosphatidic acid r 39.5 6.1 0.00021 30.0 -0.0 44 277-320 15-79 (80)
387 1j1e_C Troponin I, TNI; THIN f 39.4 66 0.0023 28.7 6.6 43 275-324 65-107 (180)
388 3vlc_E Golgi to ER traffic pro 39.2 27 0.00092 28.2 3.7 16 294-309 61-76 (94)
389 3mud_A DNA repair protein XRCC 39.1 50 0.0017 29.3 5.8 30 269-298 136-165 (175)
390 2p22_A Suppressor protein STP2 38.9 80 0.0027 27.9 7.1 42 278-319 52-93 (174)
391 1f5n_A Interferon-induced guan 38.6 2.9E+02 0.0099 28.4 12.3 11 264-274 501-511 (592)
392 2lf0_A Uncharacterized protein 38.2 67 0.0023 27.0 6.0 7 258-264 13-19 (123)
393 3fx0_A NF-kappa-B essential mo 38.2 22 0.00075 28.8 3.0 54 265-318 28-84 (96)
394 1tu3_F RAB GTPase binding effe 38.0 81 0.0028 24.5 6.0 59 276-334 13-76 (79)
395 1hs7_A Syntaxin VAM3; UP-and-D 38.0 49 0.0017 26.6 5.1 22 278-299 36-58 (97)
396 4b4t_M 26S protease regulatory 37.6 19 0.00065 35.8 3.2 37 280-316 37-73 (434)
397 1qvr_A CLPB protein; coiled co 37.4 1.3E+02 0.0043 31.8 9.6 18 274-291 400-417 (854)
398 3ni0_A Bone marrow stromal ant 37.0 1.1E+02 0.0037 24.8 6.9 16 297-312 68-83 (99)
399 4ati_A MITF, microphthalmia-as 36.9 20 0.0007 29.5 2.8 38 275-316 74-111 (118)
400 3l4f_A RHO guanine nucleotide 36.9 1.3E+02 0.0044 22.4 7.5 44 280-323 5-48 (61)
401 3sjb_C Golgi to ER traffic pro 36.5 1.3E+02 0.0043 24.2 7.2 14 303-316 56-69 (93)
402 1zhc_A Hypothetical protein HP 36.3 38 0.0013 25.8 4.0 40 278-318 27-66 (76)
403 2c9l_Y EB1, zebra, BZLF1 trans 36.2 1.3E+02 0.0043 22.1 8.5 43 252-298 3-45 (63)
404 2zdi_C Prefoldin subunit alpha 36.0 88 0.003 26.1 6.7 41 278-318 101-141 (151)
405 2djv_A Methionyl-tRNA syntheta 35.6 84 0.0029 24.1 5.9 21 305-325 42-62 (79)
406 1cii_A Colicin IA; bacteriocin 35.2 3.2E+02 0.011 28.1 11.4 41 275-315 363-403 (602)
407 3p7i_A PHND, subunit of alkylp 34.6 41 0.0014 31.2 4.8 49 247-295 263-311 (321)
408 3tnu_B Keratin, type II cytosk 34.3 1.9E+02 0.0065 23.6 12.2 19 302-320 81-99 (129)
409 2aze_B Transcription factor E2 34.2 94 0.0032 25.1 6.3 34 283-316 7-40 (106)
410 1hwt_C Protein (heme activator 34.0 22 0.00075 26.2 2.3 22 273-294 56-77 (81)
411 3aon_A V-type sodium ATPase su 33.8 1.6E+02 0.0053 26.4 8.4 53 277-329 33-85 (217)
412 3azd_A Short alpha-tropomyosin 33.4 12 0.0004 25.1 0.6 19 280-298 9-27 (37)
413 2xnx_M M protein, M1-BC1; cell 33.0 2.3E+02 0.0078 24.4 8.8 32 292-323 69-100 (146)
414 2w6b_A RHO guanine nucleotide 32.9 1.4E+02 0.0049 21.8 7.4 43 277-319 12-54 (56)
415 1gk7_A Vimentin; intermediate 32.7 75 0.0026 21.4 4.6 18 282-299 20-37 (39)
416 3bas_A Myosin heavy chain, str 32.4 1.7E+02 0.0059 22.5 11.6 44 277-320 44-87 (89)
417 4f3l_B BMAL1B; BHLH, PAS, circ 32.3 26 0.00089 33.5 3.1 38 250-287 5-42 (387)
418 3zwh_Q Myosin-9; Ca-binding pr 32.2 19 0.00065 25.3 1.5 24 297-320 7-30 (45)
419 3iyn_Q Protein IX, PIX, hexon- 32.1 29 0.00099 29.5 2.9 10 192-201 33-42 (140)
420 1rtm_1 Mannose-binding protein 32.1 51 0.0018 26.5 4.5 16 284-299 6-21 (149)
421 3gpv_A Transcriptional regulat 31.8 90 0.0031 26.0 6.1 8 250-257 57-64 (148)
422 1t3j_A Mitofusin 1; coiled coi 31.6 1.6E+02 0.0054 23.7 7.1 15 274-288 53-67 (96)
423 1fmh_B General control protein 31.5 87 0.003 20.2 4.4 16 306-321 11-26 (33)
424 2efl_A Formin-binding protein 31.5 2.6E+02 0.0088 24.8 9.5 28 290-317 131-158 (305)
425 3gwk_C SAG1039, putative uncha 30.9 1.1E+02 0.0036 22.9 5.9 28 295-322 54-81 (98)
426 3aon_A V-type sodium ATPase su 30.4 2.1E+02 0.0073 25.4 8.7 29 278-306 41-69 (217)
427 2a3d_A Protein (de novo three- 30.4 29 0.001 25.9 2.4 59 262-323 9-71 (73)
428 4ad8_A DNA repair protein RECN 30.4 1.5E+02 0.0051 29.2 8.4 30 273-302 205-240 (517)
429 3pik_A Cation efflux system pr 30.3 3.3E+02 0.011 25.1 11.4 31 271-301 347-377 (446)
430 1lwu_B Fibrinogen beta chain; 30.2 66 0.0023 30.9 5.5 6 296-301 42-47 (323)
431 1gax_A Valrs, valyl-tRNA synth 29.9 84 0.0029 33.9 6.8 30 29-64 398-427 (862)
432 3nr7_A DNA-binding protein H-N 29.7 2E+02 0.0068 22.4 7.7 46 276-321 25-70 (86)
433 4gif_A Polycystic kidney disea 29.6 1.5E+02 0.005 20.8 5.9 34 275-308 7-40 (45)
434 2f1m_A Acriflavine resistance 29.5 1.1E+02 0.0037 27.1 6.6 28 294-321 103-130 (277)
435 3csx_A Putative uncharacterize 29.4 1.4E+02 0.0047 23.4 6.2 29 295-323 49-77 (81)
436 3tul_A Cell invasion protein S 29.2 72 0.0025 27.8 5.0 48 274-321 75-125 (158)
437 1flk_A TNF receptor associated 29.2 65 0.0022 28.7 5.0 27 280-306 41-67 (228)
438 2fic_A Bridging integrator 1; 29.1 2.1E+02 0.0072 25.2 8.4 22 280-301 188-209 (251)
439 3hhm_B NISH2 P85alpha; PI3KCA, 29.0 1.6E+02 0.0053 28.7 8.0 20 303-322 226-245 (373)
440 4aj5_K Spindle and kinetochore 28.9 2.6E+02 0.0088 23.5 8.3 50 275-324 50-99 (123)
441 2lf0_A Uncharacterized protein 28.8 62 0.0021 27.2 4.3 45 274-318 9-58 (123)
442 3pjs_K KCSA, voltage-gated pot 28.7 1.1E+02 0.0036 25.9 6.1 23 274-296 137-159 (166)
443 3brv_B NF-kappa-B essential mo 28.5 2E+02 0.0067 22.0 7.5 35 274-308 32-66 (70)
444 3gpv_A Transcriptional regulat 28.3 1.6E+02 0.0056 24.4 7.1 9 249-257 59-67 (148)
445 3thf_A Protein shroom; coiled- 28.2 2E+02 0.007 25.8 7.9 30 270-299 14-43 (190)
446 3l4q_C Phosphatidylinositol 3- 28.2 2.3E+02 0.008 24.8 8.2 47 277-323 98-144 (170)
447 3ljc_A ATP-dependent protease 28.1 2.4E+02 0.0083 25.1 8.7 13 308-320 237-249 (252)
448 2i1j_A Moesin; FERM, coiled-co 28.1 80 0.0027 32.4 6.0 13 275-287 342-354 (575)
449 3a5c_G V-type ATP synthase sub 28.1 1.8E+02 0.0063 26.1 7.8 48 278-325 26-73 (223)
450 1r8e_A Multidrug-efflux transp 28.0 1.6E+02 0.0055 26.0 7.5 23 279-301 83-105 (278)
451 3swy_A Cyclic nucleotide-gated 27.8 1.6E+02 0.0054 20.7 6.2 25 276-300 6-30 (46)
452 1j1d_B Troponin T, TNT; THIN f 27.6 2.5E+02 0.0084 22.8 9.3 41 275-322 49-89 (106)
453 1vcs_A Vesicle transport throu 27.4 1.2E+02 0.0042 23.9 5.9 24 293-316 71-94 (102)
454 3mtu_E Head morphogenesis prot 27.4 1.9E+02 0.0066 22.4 6.6 39 284-322 32-70 (77)
455 1j1e_C Troponin I, TNI; THIN f 27.3 2.1E+02 0.0071 25.5 7.8 39 285-323 61-99 (180)
456 3ghg_C Fibrinogen gamma chain; 27.3 1.8E+02 0.006 29.0 8.1 42 283-324 92-133 (411)
457 3he4_B Synzip5; heterodimeric 27.3 1.5E+02 0.0052 20.3 6.5 16 275-290 10-25 (46)
458 2p4v_A Transcription elongatio 27.1 2.1E+02 0.0073 24.2 7.7 21 302-322 52-72 (158)
459 2efk_A CDC42-interacting prote 27.1 3.3E+02 0.011 24.2 9.4 12 297-308 131-142 (301)
460 1m1j_A Fibrinogen alpha subuni 27.1 3.5E+02 0.012 27.5 10.2 19 247-265 57-75 (491)
461 1rtm_1 Mannose-binding protein 26.8 72 0.0025 25.6 4.5 18 277-294 6-23 (149)
462 3pjs_K KCSA, voltage-gated pot 26.8 72 0.0025 26.9 4.6 10 278-287 148-157 (166)
463 2akf_A Coronin-1A; coiled coil 26.4 90 0.0031 20.2 3.8 20 287-306 4-23 (32)
464 1r8i_A TRAC; VIRB5, helical bu 26.4 80 0.0027 28.0 5.0 36 296-331 15-50 (213)
465 4i0x_B ESAT-6-like protein MAB 26.3 1.5E+02 0.005 22.8 6.0 49 274-322 31-86 (103)
466 2p22_C Protein SRN2; endosome, 26.1 3.4E+02 0.012 24.0 9.5 28 278-305 82-109 (192)
467 1lwu_A Fibrinogen alpha-1 chai 26.0 1.5E+02 0.0052 24.7 6.2 45 275-319 22-66 (119)
468 3iyn_Q Protein IX, PIX, hexon- 26.0 63 0.0022 27.4 3.9 38 271-308 94-131 (140)
469 4g2k_A General control protein 25.9 2E+02 0.0068 24.2 6.9 48 274-321 13-60 (125)
470 1avy_A Fibritin, gpwac M; bact 25.5 1.7E+02 0.0057 22.5 5.9 34 277-310 10-43 (74)
471 1xaw_A Occludin; coiled-coil, 25.3 3E+02 0.01 23.4 8.2 48 275-322 59-135 (140)
472 3n5l_A Binding protein compone 25.2 1.1E+02 0.0037 27.9 5.9 57 243-299 250-306 (310)
473 4ioe_A Secreted protein ESXB; 25.0 1.1E+02 0.0036 22.6 4.8 31 278-308 12-42 (93)
474 2pms_C Pneumococcal surface pr 25.0 1E+02 0.0034 26.0 5.0 51 273-323 59-116 (125)
475 2w6b_A RHO guanine nucleotide 25.0 2E+02 0.007 21.0 7.7 45 278-322 6-50 (56)
476 3sja_C Golgi to ER traffic pro 24.8 80 0.0027 23.8 3.9 44 279-322 3-51 (65)
477 3tq2_A KE1; parallel three hel 24.8 1.5E+02 0.0051 19.4 5.5 32 277-308 3-34 (36)
478 4avm_A Bridging integrator 2; 24.8 2.2E+02 0.0075 25.4 7.7 53 270-322 134-190 (237)
479 2gd5_A Charged multivesicular 24.7 1.2E+02 0.004 26.1 5.7 38 285-322 10-47 (179)
480 1x79_B RAB GTPase binding effe 24.6 1.9E+02 0.0066 23.8 6.6 45 277-321 1-45 (112)
481 4avm_A Bridging integrator 2; 24.5 2.9E+02 0.0099 24.6 8.5 52 275-326 33-84 (237)
482 3a6m_A Protein GRPE, HSP-70 co 24.4 1.1 3.8E-05 39.7 -7.5 64 274-337 18-81 (177)
483 1urq_A M-tomosyn isoform; tran 24.3 1.4E+02 0.0049 21.9 5.3 36 271-306 28-63 (63)
484 4a3a_A Amphiphysin; structural 24.1 3.3E+02 0.011 24.5 8.8 54 273-326 36-89 (243)
485 4e81_A Chaperone protein DNAK; 24.0 3.8E+02 0.013 23.7 9.5 75 247-323 119-204 (219)
486 1ez3_A Syntaxin-1A; three heli 23.8 2.1E+02 0.0071 22.5 6.7 48 274-321 18-68 (127)
487 1ykh_B RNA polymerase II holoe 23.8 1.9E+02 0.0064 24.1 6.5 45 243-287 81-125 (132)
488 1uru_A Amphiphysin; endocytosi 23.8 1.5E+02 0.0052 25.7 6.4 70 253-322 121-196 (244)
489 3vbb_A Seryl-tRNA synthetase, 23.8 1.9E+02 0.0063 29.6 7.7 83 262-346 15-148 (522)
490 3eff_K Voltage-gated potassium 23.7 1.5E+02 0.005 24.0 5.9 41 259-299 95-135 (139)
491 4efa_E V-type proton ATPase su 23.6 3.8E+02 0.013 23.6 11.0 73 250-322 52-124 (233)
492 2vs0_A Virulence factor ESXA; 23.6 1.6E+02 0.0056 21.5 5.7 33 278-310 9-41 (97)
493 3fpp_A Macrolide-specific effl 23.6 1.6E+02 0.0056 26.7 6.8 44 278-321 65-108 (341)
494 1zhc_A Hypothetical protein HP 23.6 1.1E+02 0.0039 23.0 4.8 53 271-324 20-72 (76)
495 4ghu_A TNF receptor-associated 23.6 1.2E+02 0.0043 26.3 5.7 33 277-309 2-34 (198)
496 1yc9_A VCEC, multidrug resista 23.5 4.4E+02 0.015 24.3 11.0 67 254-320 326-392 (442)
497 3rvy_A ION transport protein; 23.4 17 0.00059 32.9 0.0 42 266-307 240-281 (285)
498 3onj_A T-snare VTI1; helix, HA 23.3 2.7E+02 0.0091 21.7 7.1 44 274-317 40-94 (97)
499 3iox_A AGI/II, PA; alpha helix 23.2 6.1E+02 0.021 25.9 11.7 71 253-323 15-93 (497)
500 3mtu_E Head morphogenesis prot 23.2 2.6E+02 0.009 21.6 8.2 50 273-322 28-77 (77)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.49 E-value=2.8e-14 Score=105.74 Aligned_cols=52 Identities=40% Similarity=0.562 Sum_probs=49.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
||++|+++||+||++||.||++|+++||.+|..|+.||..|+.++..|++++
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999999987665
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.43 E-value=8e-13 Score=100.08 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|+.++..|..-
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998887776666543
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.41 E-value=8.8e-13 Score=99.05 Aligned_cols=57 Identities=33% Similarity=0.457 Sum_probs=51.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|+.++..|+.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999887666666554
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.37 E-value=9.2e-13 Score=99.33 Aligned_cols=57 Identities=30% Similarity=0.444 Sum_probs=50.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
|+++|+.+||+||++||.||++++++|+.+|+.|+.+|..|..++..|+.++..|+.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999888666665543
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.33 E-value=1.9e-12 Score=98.32 Aligned_cols=52 Identities=35% Similarity=0.493 Sum_probs=44.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 255 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 255 R~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
..+++.+||+||+|||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556999999999999999999999999999999999999988876653
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.24 E-value=2.1e-11 Score=92.47 Aligned_cols=57 Identities=30% Similarity=0.478 Sum_probs=45.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 253 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 253 ~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
+|+++++++||.||+|||.||++++++|+.+++.|+.+|..|..+|..|+.++..|+
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999977766555554
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.23 E-value=2.6e-11 Score=93.97 Aligned_cols=61 Identities=30% Similarity=0.358 Sum_probs=56.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 256 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 256 ~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
.||+.+||.|+|.+|.||++||.+||.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999999999999999888888888887764
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.99 E-value=1.1e-09 Score=88.06 Aligned_cols=62 Identities=26% Similarity=0.309 Sum_probs=51.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 253 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 314 (346)
Q Consensus 253 ~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~ 314 (346)
.+...|+.+|.+||+|||.++++...+++.++..|+.||..|+.+|..|+.++..|+.-...
T Consensus 14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788999999999999999999999999999999999999997765555544444333
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.93 E-value=2.7e-09 Score=84.26 Aligned_cols=56 Identities=29% Similarity=0.389 Sum_probs=48.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
+...|+.+|.+||+|||.++++...+++.++..|+.||..|+.+|..|+.++..|+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666889999999999999999999999999999999999999977755555544
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.83 E-value=9.4e-11 Score=97.62 Aligned_cols=60 Identities=25% Similarity=0.351 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 248 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 248 ~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
.+..++|.+||+++||.+|+.||.||.+++++||.++..|..+.+.|..++..|+.+++.
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~ 90 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDA 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999977766666555555554444433333
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.60 E-value=2.9e-07 Score=74.46 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
-.++|..||..+||.+|+.||.||.+.+++||.++..|..+...| +.++..+..|...++.++..|.
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L-------~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQL-------KQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 368899999999999999999999999988887666665555544 4555556677777777777665
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00036 Score=48.74 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
|+|+.+||.++..|+..|.+|..++..|+.|+..|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 589999999999999999999999877754444443
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.97 E-value=0.00034 Score=56.43 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019071 251 RELKRQKRKQSNRESARRSRLRKQAECEELQA 282 (346)
Q Consensus 251 ~e~KR~RRk~~NRESARRSR~RKk~~leeLE~ 282 (346)
..+|..||+.+||.+|++||+||.+.++.|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 45678899999999999999999999888763
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.60 E-value=0.0073 Score=43.90 Aligned_cols=48 Identities=42% Similarity=0.551 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+.|-++|+.|+.||..|++|++.=..++.+|+.|-.-+++-|..|++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 478899999999999999999999999999999999999999988864
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.40 E-value=0.012 Score=46.57 Aligned_cols=53 Identities=32% Similarity=0.414 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcch
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
+.-|+.+++.|+.+|..|..++..++...+.|..||.+|+++..... +.|+.|
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq--~Rl~~L 74 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 44555566666666666666666655555556666666665555544 444443
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=96.08 E-value=0.019 Score=47.02 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~-------el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+++-+||.+++.|+.||..|+. +|..|..+++.|+.||..|+.+-+.-
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788888888888887776 78888888888888888888765544
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.92 E-value=0.028 Score=44.53 Aligned_cols=52 Identities=33% Similarity=0.440 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
=|.++++|+.+-..|..+++.++.....|..++++|+.|...+.++|..|-|
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999998888888888889999888888888888765
No 18
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.90 E-value=0.032 Score=41.84 Aligned_cols=41 Identities=34% Similarity=0.506 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
+..-|.+|.+|..-|..|.+|+..|+.+++.|.+||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 34558899999999999999999999999999999999983
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.79 E-value=0.039 Score=47.42 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.+.+++.|+.+++.+..|+..|+.++..++.+++.+..++..|+.++..|+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666666666666666666665555554
No 20
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=95.71 E-value=0.043 Score=38.43 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.+..||.+|..|+.||+.|+.+.-.-+.-+..|+.|...||.+++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999888888888999999999998875
No 21
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=95.68 E-value=0.053 Score=40.09 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcch
Q 019071 257 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 257 RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
+.+-+||.++|+||.|=+..++-...- ...-..||.+|+--|.+++..-++..+
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~v---------------------aaaks~en~rlr~l~kqmcpsldvdsi 57 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYREV---------------------AAAKSSENDRLRLLLKQMCPSLDVDSI 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhhcccchHHHHHHHHhCCccccccc
Confidence 345679999999999877655544332 233356777777778888765554433
No 22
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.27 Score=43.06 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
..+.+..++..+.+..-++.=.....++.+-..-++.|..|...|+-++..+..+...|+.||..|-+++..-.+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555444555566666677888999999999999999999999999999999888766543
No 23
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.30 E-value=0.05 Score=44.62 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 299 QRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 299 ~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+..+++++.|+.|+..||++|..|..
T Consensus 71 ~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 71 QRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677788888888888877764
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.01 E-value=0.22 Score=50.04 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++++++.+.|+.|+..|+.+++..++....|+.|+..++++|++|.
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555555543
No 25
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=95.01 E-value=0.024 Score=37.67 Aligned_cols=27 Identities=41% Similarity=0.622 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
+..||.+|+.|-.+|..|..++.+|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999999988864
No 26
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.94 E-value=0.077 Score=39.69 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+...|+.+...|..++..|+.++..|+.|+..|+.-|..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4467777788888888888888888888888888776654
No 27
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=94.94 E-value=0.031 Score=37.35 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
++..||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5778999999999999999988888764
No 28
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=94.77 E-value=0.12 Score=37.20 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+.++..|+.-|..|..++..|+..|..++.|+.+|+.-|.+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999987765
No 29
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=94.62 E-value=0.3 Score=39.27 Aligned_cols=55 Identities=16% Similarity=0.323 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 266 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 266 ARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+|.|++-+-|...= +...+ .+...|..++..|..+.+.|..||..+..++..+.
T Consensus 28 q~RRtlKNRgyAq~C--R~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSC--RYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544333 33333 34466777777778888888888888888887765
No 30
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.61 E-value=0.066 Score=36.15 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
++..||.+|+.|-.+|..|..++.+|++-+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 5778999999999999999999988866543
No 31
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.60 E-value=0.069 Score=44.57 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+..|+.++..|+..+..|...|..|...+..|+...+....-|..|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 3445555555555555555555555555555555544444444444
No 32
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=94.57 E-value=0.087 Score=38.91 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|+++..|+..|..|..++..|+..|...+.|+.+|..-|.+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999999999999999999887765
No 33
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.54 E-value=0.22 Score=42.70 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.+++++.++..|..++..++.+++.++++++.|+.++..|..++.+|.
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555666666655555553
No 34
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=94.40 E-value=0.2 Score=39.83 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 289 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 289 ~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.||..|..+|..|++++..|+.+|..|++-....
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998776554
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.35 E-value=0.2 Score=50.26 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=5.3
Q ss_pred chhcchhhcCCC
Q 019071 326 EAVANLEQSNPT 337 (346)
Q Consensus 326 ~~~s~L~~~~~~ 337 (346)
..+..|++.++.
T Consensus 572 ~~~~~l~~~~~~ 583 (597)
T 3oja_B 572 QKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHhcC
Confidence 345555554443
No 36
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.29 E-value=0.06 Score=36.36 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
++..||.+|+.|..+|..|..++.+|++.+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4678999999999999999999988866543
No 37
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=94.19 E-value=0.12 Score=40.37 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+++++||.++.-++.-..+|...|...+.++..|+.+...|.++|..+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57889999999999999999999999999999999999999999888764
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.14 E-value=0.29 Score=35.99 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 283 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 283 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.+..|+.+...|..++..|+.++..|+.|+..|+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666666666554
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=94.13 E-value=0.086 Score=41.54 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.++++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777766666666666553
No 40
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=94.10 E-value=0.2 Score=36.35 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
+.+|+.++..|...|..|..-+...+.++..|..|...|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666655555555554444433
No 41
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=94.05 E-value=0.065 Score=35.74 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
++..||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5778999999999999999998888865
No 42
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=93.93 E-value=0.19 Score=35.13 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+..|+.+-..|..++..|.+.+..|..||..||+-|.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 5567777777777777777777777777777776553
No 43
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=93.89 E-value=0.28 Score=41.29 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+|+.|+.|+..|..+|..+..+++.|+.+|..|..+|..-
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 34777778888888888888888888888888887776543
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.84 E-value=0.55 Score=34.85 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+..|+.+...|..+...|+.++..|..|...|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555444
No 45
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.79 E-value=0.22 Score=36.13 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.++..|+.++..|..++..|.+.+...+.|...|+++|.+|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677788889999999999999999999999999999888874
No 46
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.74 E-value=0.053 Score=51.00 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
..+.+|+.++..|..+|..|..+++.+++++..|+.|+..|+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666665555555555554443
No 47
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=93.67 E-value=0.0056 Score=49.31 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 019071 251 RELKRQKRKQSNRESARRSRLRKQA 275 (346)
Q Consensus 251 ~e~KR~RRk~~NRESARRSR~RKk~ 275 (346)
..+|..||+-+||.+|++||+||.+
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4567889999999999999999864
No 48
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=93.59 E-value=0.09 Score=34.90 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
+..||.+|+.|-.+|..|..++.+|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 568899999999999999888888764
No 49
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.58 E-value=0.15 Score=46.04 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 310 SENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 310 ~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
.|+..|+.....|. ..|++|++.+|+
T Consensus 95 ~el~~l~~~~~~l~--~~ireLEq~NDd 120 (189)
T 2v71_A 95 DDLSQTRAIKEQLH--KYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhhH
Confidence 33333344444443 445666665554
No 50
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.54 E-value=0.22 Score=38.59 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777777777777766666666666666655543
No 51
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.34 E-value=0.58 Score=37.33 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
+.++++|+.+-..|+.++..|..++..|+.-+.++
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33445555555555555555555555554444433
No 52
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=93.32 E-value=0.21 Score=39.36 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 289 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 289 ~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.||..|..+|..+++++..|+.||..|++-+...+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888898888889999999888887666553
No 53
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=93.30 E-value=0.097 Score=34.99 Aligned_cols=28 Identities=14% Similarity=0.461 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
++..||.+|+.|-.+|..|..++.+|++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5678999999999999999888888764
No 54
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=93.29 E-value=0.097 Score=34.98 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
++..||.+|+.|-.+|..|..++.+|++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678899999999999999988888764
No 55
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=93.23 E-value=0.33 Score=37.53 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
-...|..++..|+.+++.|+.+|..|+.+|..|.+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34567777777888888888999999999988765
No 56
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.17 E-value=0.14 Score=37.21 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 283 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 283 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.|+.|+.||.+|+.++ +.|..++.+|+.+|.+
T Consensus 20 d~eaLk~E~~eLk~k~-------~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKY-------EAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 4555555555555555 5556666666666553
No 57
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=93.08 E-value=0.11 Score=34.69 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
++..||.+|+.|-.+|..|..++.+|++-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56789999999999999999999888653
No 58
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.07 E-value=0.76 Score=35.91 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
.+++|+.+-..|+.++..|..++..|+
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 59
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=92.82 E-value=0.28 Score=44.76 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
||..|..+|..|++++..|+.||..|++-
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544443
No 60
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=92.81 E-value=0.16 Score=34.33 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 288 SNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 288 e~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
-.||.+|..+|+.-.+++..|+.||.+|++
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 358999999999999999999999999874
No 61
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.78 E-value=0.2 Score=36.46 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el 298 (346)
++|+.+++.|+.++.+|+.++
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444
No 62
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=92.77 E-value=0.14 Score=33.95 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
+.+||.+|+.|-.+|..|..++.+|++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568899999999999888888888754
No 63
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.58 E-value=0.68 Score=51.27 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 019071 308 LTSENNSIKEDLSRLC 323 (346)
Q Consensus 308 L~~EN~~Lr~~L~~L~ 323 (346)
|+.||..|++++.+|.
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 64
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=92.45 E-value=0.52 Score=38.80 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
..+++++..+..|+.++.+...++..++..+..|..+...|+.+|.+
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555543
No 65
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.93 E-value=0.67 Score=35.52 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
+.+|+.....|..||..|+.+|..|..++..
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555444443
No 66
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=91.65 E-value=0.22 Score=32.31 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
++..||.+|.+.++||-+|.+++.+|..+|
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 356788888888888888888888887665
No 67
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=91.60 E-value=0.89 Score=35.91 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
-...|..+...|..+.+.|+.+|..|+.+|..|.+
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667777778888888899999999999998875
No 68
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=91.45 E-value=0.19 Score=47.22 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhcchhhcCC
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLEQSNP 336 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~-~~~s~L~~~~~ 336 (346)
+.+++.|+.++..|..++..|.+++..|+.|+..|+++|.+|..+ ..+.++...++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~d 109 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHD 109 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcC
Confidence 678899999999999999999999999999999999999999763 33555444443
No 69
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.34 E-value=0.84 Score=34.07 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
-......|..++..|..++..|..|+..|+++|
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666554
No 70
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.17 E-value=0.93 Score=35.08 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el 298 (346)
.+++|+.++..++.++..|+.++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 71
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.07 E-value=2.1 Score=35.58 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 262 NRESARRSRLRKQAECEELQARVETLSN---ENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 262 NRESARRSR~RKk~~leeLE~rv~~Le~---EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
|-.+|-+.=..|+..|++|++++..++. .+.-|+.++...+..+..-+..-.+|-.+
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~e 91 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEK 91 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhH
Confidence 3445555556677777777777777776 55567777776666665444333333333
No 72
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.03 E-value=1.7 Score=31.98 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
....|..++..|..++..|..+...|+.++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455444444444444444444444444
No 73
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=90.82 E-value=2.1 Score=33.74 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcc
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 330 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~ 330 (346)
-+-+|..+++.|+.|...|+-+++.+..+++.|......+-..|........+..
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~~~~~~ 75 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3466888888888888888888888888888888777777766655444433333
No 74
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=90.58 E-value=0.79 Score=45.29 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
.++++++|+++++.|+.++..|..++..|++++...+.+.+.|..+|.+|.|.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45567777777777777777777777777777777777777888888887664
No 75
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=90.52 E-value=3 Score=32.93 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 262 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 262 NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
|-.||-.+--|-| ..+.+++...+..|..+.+++.....++..|..|...|+.+|..|+.
T Consensus 14 eLQSALeaEIqAK---Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTR---QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444433 23455666778888888888888888899999999999988888764
No 76
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=90.30 E-value=0.84 Score=45.33 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
.+++++|+++++.|+.++..+..++..+++++.+...+.+.|-.+|.+|.|.
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3566777777777888888888888888888888888888888888888763
No 77
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.27 E-value=0.86 Score=50.47 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
.++.++..|+.|+..|+.++..+.++.+.|+.++..|++
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555554444444443
No 78
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.25 E-value=2 Score=30.98 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.+..+++++.++..++.+...+..++..+.+.+...+.+...|+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556666666666666666666666666655554
No 79
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.99 E-value=3.9 Score=36.27 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=28.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 258 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 258 Rk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
..+.--+.=|+.|.+..+.+.+|+.++..|+.|...++..+..+..+
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e 119 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE 119 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777777777777777666666655554444333
No 80
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=89.88 E-value=0.52 Score=31.55 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
++.++...+++++.|+.+|..|.+++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 44555555556666666666666666554
No 81
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=89.85 E-value=2.7 Score=33.43 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 019071 300 RLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 300 ~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.-+++++.|+.+..+++..|..|
T Consensus 55 ~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 55 HHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444
No 82
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.83 E-value=6.7 Score=31.53 Aligned_cols=18 Identities=6% Similarity=0.206 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNE 290 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~E 290 (346)
+-.++..|..++..|+.+
T Consensus 42 ~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 83
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.70 E-value=2.9 Score=35.07 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
....-+.++.+|+.+|..|+.++..-+.....+..+|+.|+.|+..|
T Consensus 34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777776666666655555555555544
No 84
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=89.63 E-value=0.55 Score=36.72 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+|-.+|+.|..|+..|+.++..+++-...++..+..|.++|.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555544444444443
No 85
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.47 E-value=1.6 Score=35.06 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
+++++|+.+-..|..+...|..+...|.
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444333333
No 86
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=89.37 E-value=1.6 Score=34.67 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 289 NENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 289 ~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.||..|..+|..+++++..|+.||..|++-...
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888765544
No 87
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.33 E-value=7.4 Score=32.29 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQR 300 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~ 300 (346)
+|..++..|..|+..++.++..
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 88
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=89.33 E-value=4.6 Score=31.62 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
...+++++.|.+--+.|..=-+.|..-|.+|..+...|......|+.+...|.
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777787777777777788888888888888888888888888887775
No 89
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=89.27 E-value=0.5 Score=31.57 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
++..||.+|+.|-.++..|..++.+|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677888888888888888888877754
No 90
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=89.17 E-value=1.2 Score=34.59 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhc
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 334 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~ 334 (346)
++|+.|+..|+....-+..-|+.|...+.....+...|+.+|..|. +.+.++...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~--~rl~~~~~~ 64 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRST 64 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhc
Confidence 4788899999999999999999999999999999999999998887 566665543
No 91
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=88.92 E-value=3.2 Score=33.58 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=52.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcC
Q 019071 260 QSNRESARRSRLRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 335 (346)
Q Consensus 260 ~~NRESARRSR~RKk~~leeLE~rv~~Le---~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~ 335 (346)
..|..+|-..=..|+..+++|...+..++ ..+.-|+.++...+..+..-+..-.+|.++...|. ..++.|...+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~--~ql~~lq~q~ 84 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ--EQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHH
Confidence 34556777777778999999998888888 56677888888888888776666666655555554 4455554444
No 92
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=88.32 E-value=0.2 Score=46.64 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|.++.+.|++||..|+.++.. ++.|+.||.+|++.|..
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~----~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESE----VADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Confidence 334444445555444444433 46788899999987664
No 93
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=88.24 E-value=0.57 Score=36.19 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
||..|+.++..|+.+...|+.++..|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333333333
No 94
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=87.89 E-value=2.3 Score=32.85 Aligned_cols=47 Identities=23% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.+-+.++..|+....--.+-.++|..++-.|--||.-|.++|..|+
T Consensus 27 L~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 27 LKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 33344555555555544455567777888888999999999988775
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.65 E-value=2.9 Score=32.25 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
...+.+.+.+...++.+...|..++..|..+++.+.........+|.
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555554444444444444444444443
No 96
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=87.60 E-value=5 Score=31.01 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=39.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 257 KRKQSNRESARRSRLRKQAECEELQARVETL---SNENRNL---RDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 257 RRk~~NRESARRSR~RKk~~leeLE~rv~~L---e~EN~~L---~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.|+.....+-|+.|.+=...+.+|..-|-.. ...-.-| -.-|..|+.+.+.|..|+..|+.++....
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555666777766677777777654321 0011112 23455667777777777777777776653
No 97
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.59 E-value=2.8 Score=34.14 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 298 LQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
|...+.+...++..|..|+++|...
T Consensus 71 Va~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 71 VADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444666777788888888888653
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.52 E-value=0.96 Score=35.01 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
....|..|..++..+..+++.|+.+|-+++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444555555555555543
No 99
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=87.50 E-value=1 Score=35.04 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
..|+.+...|..+++.|+.||..|+.+|..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555556666655554
No 100
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=87.49 E-value=0.96 Score=40.87 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.-|..|..||..|..+++....+++.|+.+.+.|++++
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444444444444333
No 101
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.36 E-value=1.2 Score=45.94 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhH
Q 019071 250 ERELKRQKRKQSNR 263 (346)
Q Consensus 250 E~e~KR~RRk~~NR 263 (346)
|+++++...+++|+
T Consensus 59 ErDltkrINELKnq 72 (562)
T 3ghg_A 59 NQDFTNRINKLKNS 72 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHH
Confidence 44555544444443
No 102
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.31 E-value=8.4 Score=29.57 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..-..+++.++.++...+..+..+..+|..|+..+..|+.+...+.++|....
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777888888888888888888877777776654
No 103
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.15 E-value=1.6 Score=44.97 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
.+.++.++|++++..|+.+...-...|..|+.-++.++.+.++|..
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444666666666655554445555555555555555555543
No 104
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=87.10 E-value=3.5 Score=33.77 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQR 300 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~ 300 (346)
..+.+|+.+|+.|+.||+.|+.+.+.
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666555555443
No 105
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=86.95 E-value=2.1 Score=31.09 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 298 LQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+..|..++..|..||..|+.+|..|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666666666666554
No 106
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=86.88 E-value=1.9 Score=33.76 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRL------SEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L------~~e~~~L~~EN~~Lr~~L~~L 322 (346)
|.+++.|+.+++.|+.+...|..++..- -.++..|..+...|..+|..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888887766421 133444444444444444443
No 107
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.69 E-value=8.4 Score=34.12 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
-|+||+. .+|...+..++..+.+|+..+..|......|..|+..|..+|.
T Consensus 30 ~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 30 VRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 5555555555555555555555555555555555555554443
No 108
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=86.53 E-value=1.1 Score=41.08 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcC
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 335 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~ 335 (346)
++.|+.+++.|+.++..|+.++.+++.+++-++....+=++++........+.+|...+
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVl 119 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVL 119 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34445555555555555555555555555555555555555555554444444444443
No 109
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=86.45 E-value=2.9 Score=29.67 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+||.+|+.|+.-...|+.++.+|-.++.. -...|+.+|..|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 57888888888888888888777555543 4456777777664
No 110
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.29 E-value=6.9 Score=32.56 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.+.+.++..|......|..+|..|...++.....|..|...-..+.
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle 110 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555554444443
No 111
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.29 E-value=12 Score=30.11 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 263 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 263 RESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.+.|...-..-+..+..++.+...++.+...|..++..|..+++.+.......+..|
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444334444444555555555555555555555555555554444444444333
No 112
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=86.19 E-value=2.2 Score=35.10 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+++-|..+++.++....+|++++....++++.++.....|+.++..|+.
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999998874
No 113
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.10 E-value=6 Score=38.56 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 298 LQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|+.|+.++..|..+...+++++++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444333
No 114
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=86.01 E-value=4 Score=32.08 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 312 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 312 (346)
..=+..++.|+.+|..|+..++.+.-+++.|++....+-.+.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555444444443
No 115
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=86.01 E-value=4.4 Score=29.39 Aligned_cols=44 Identities=2% Similarity=0.139 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.+++|..+|..|..+...|..++..|+.++...+.|-.+--++|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666677777766666666666666666666555555554444
No 116
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.93 E-value=14 Score=30.93 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.|+.+...-+.+.++|+.+|..|.++++.+..|..+||.+...+
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 33333333344466666666666666666666666666665544
No 117
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.88 E-value=1.3 Score=44.22 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+|..+++.|+.+...|..+.+.|+++...|+.|...|++++..|+.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45556666666666666666666666667777777777777777765
No 118
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.73 E-value=3.8 Score=32.83 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSN 289 (346)
Q Consensus 276 ~leeLE~rv~~Le~ 289 (346)
++..|..++..|+.
T Consensus 45 ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 45 EQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 119
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=85.73 E-value=3.4 Score=31.90 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..|..|+.+++.-+.+-..++.++..+.+.+..-..|...|+..|.+|-
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~ 69 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3455666666666666666667777776666666677777777776653
No 120
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.73 E-value=9.3 Score=30.37 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
..|+.+|..+..+...|..|...|.+
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 121
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=85.66 E-value=3.5 Score=29.13 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 286 TLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
.|+..|-+|...-+.|.+-+..|+.|..+|.
T Consensus 14 rlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 14 RLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 122
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=85.53 E-value=5.4 Score=31.47 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=35.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 260 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 260 ~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
++.+.+-++-=.+=+.-...++.++...+..|..|..++..|+++++.|+.+
T Consensus 23 IqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 23 VLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444444444445555666777888888888888888888888888777654
No 123
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=85.27 E-value=10 Score=28.50 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=33.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 257 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 257 RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
.-..+||+=|-..=.. .+++|...+..-..+....+.+|..|+..++.|+.|...||
T Consensus 20 ~ia~knr~EaE~~y~~---k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 20 SVAAKNLQEAEEWYKS---KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345566544433222 24566666666666666666677777666666666666654
No 124
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=85.25 E-value=5.3 Score=28.61 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+..|+..+..+..+...++.++..++..+..+..+...+++.|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666665553
No 125
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.13 E-value=9.1 Score=35.02 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
..|+.+++.++.++..|..++..+.++++.+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333333333333333
No 126
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=84.99 E-value=3.7 Score=32.22 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.|..|+.+++.-+.+-..++.++..|.+.+..-..|...|+..|.+|
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34555555555555556666666666666666666666777666665
No 127
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=84.84 E-value=1.9 Score=27.92 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
..|++++..|++++..|+-|...|+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455544444
No 128
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.82 E-value=13 Score=29.55 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 265 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 265 SARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
.|-..-..-+..+..++.+...++.+...|..++..|..+++.+......+.
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444444444443333333
No 129
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=84.75 E-value=1.8 Score=34.07 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
+..|+.++..|..++..|+.+++.|+.+...|
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444455555555444
No 130
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.49 E-value=6.8 Score=35.88 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
++++|+.++..|+.+...+..++..++.++..++.+...++
T Consensus 33 el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 33 DLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 131
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.44 E-value=0.57 Score=36.49 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcC
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 335 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~ 335 (346)
|.+.|+.+|..|.+++.+|+.||..||. +..++.+.-|..++
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~----~aspEql~q~q~~l 57 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT----LASPEQLEKFQSRL 57 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSSSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHhcc
Confidence 4455667777777777888888888774 55667777666665
No 132
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.18 E-value=1.7 Score=42.94 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
-++++++|+++++.|+.++.+|.+++.........|.++...|+..+.-+
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 34455777777777777777777777777777777777777777665543
No 133
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.16 E-value=7.9 Score=33.81 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 253 LKRQKRKQSNRESARRSRLR-KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 253 ~KR~RRk~~NRESARRSR~R-Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
++++....++|...+.-..+ |..-++.|..++..|+.++..|..++..|++|+..|..
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333322 22344555666666666666666666666666655543
No 134
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=83.49 E-value=7.9 Score=30.69 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
+...-..+|..|+++++.++.....|
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444333333
No 135
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=83.28 E-value=2.8 Score=32.56 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++||.+|+.|+.-...|+.++.+|-.++... ...|+.+|..|.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE 45 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVE 45 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4577777777777777777777775555433 344455554443
No 136
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.25 E-value=16 Score=29.17 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=29.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 257 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 257 RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
....++|+....-....+.+.+.|..+=..+-.+-..++.++..+..+...|.++..--..+|.+|
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444443333334444444444444444444444444444444444
No 137
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=82.95 E-value=6.9 Score=30.09 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
...+..+..||.++..++.+.+....+.+.|-.-...|..|....+.-
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444444444444455555444433
No 138
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=82.89 E-value=1.7 Score=40.47 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 253 LKRQKRKQSNRESARRSRLRKQAECEEL-------QARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 253 ~KR~RRk~~NRESARRSR~RKk~~leeL-------E~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
.+|.+|.++-=.==-|+|+-|...++++ ..+++.|+.||++|+.+|+.|+++..+.+.+
T Consensus 119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4577777654433344555555555444 4444444445555544454444444443333
No 139
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=82.70 E-value=2.8 Score=40.61 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+++..||..|...+.+...|+.++..++.+++.|+.+...|+.+|...
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~ 59 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP 59 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355566777777777777777777777777777777777777766543
No 140
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.60 E-value=13 Score=36.36 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.++|.+.+.++.+....+.+++.|+++.+.|+.++.+|..++..
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 33444444444444444555555555555555554444444443
No 141
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.50 E-value=17 Score=30.12 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+.-|+.+++..+..-..=|.--+++..+.+.|..++..|..++..|
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 55556666666665555545555555555555555555555555443
No 142
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.31 E-value=16 Score=32.79 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L 301 (346)
|+.++..|+..+..|+..|..|
T Consensus 93 Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 143
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=82.28 E-value=3 Score=32.31 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
.+||..|+.+...|..++..|+.++..|+.++++
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677777777777777777777777666665554
No 144
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=82.09 E-value=6.5 Score=31.29 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
.++.+|..+|+.+..++..|..++..|..+.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443333
No 145
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=82.07 E-value=1.9 Score=35.25 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
.+..|..+|+.|+.||..|+.++..|.-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444444433
No 146
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=82.07 E-value=0.89 Score=28.51 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
+.|+-||..|.+++..|++++..|+
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777766666553
No 147
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=82.04 E-value=1.3 Score=32.28 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
.|+++...++.|..||..|+.++..|+
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 148
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=81.89 E-value=5.8 Score=27.58 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 297 ELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 297 el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++..|..+++.|+.....|+.+|..|.
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555666666666666666554
No 149
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.82 E-value=17 Score=28.47 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+-.....+|+.+...|..+...|..++..+.+.+..|......|..+|..|.
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556788888888888888888888888889999888888888888774
No 150
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=81.79 E-value=4 Score=33.76 Aligned_cols=70 Identities=24% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH---HHHHHHHHHHHHHHH---HHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVE-------------TLSN---ENRNLRDELQRLSEE---CEKLTSENNS 314 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~-------------~Le~---EN~~L~~el~~L~~e---~~~L~~EN~~ 314 (346)
|+.+|+...-.+-|+.|.+=...+.+|..-|- .|.. -...|+.++..|+++ ...|+.+|..
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~ 102 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRH 102 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556677777776777777776433 2222 233455555555443 4567778888
Q ss_pred HHHHHHHhc
Q 019071 315 IKEDLSRLC 323 (346)
Q Consensus 315 Lr~~L~~L~ 323 (346)
|..+|..|+
T Consensus 103 L~~riqeLE 111 (118)
T 4ati_A 103 LLLRVQELE 111 (118)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 888777765
No 151
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.78 E-value=9.2 Score=31.95 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..+-+..|..|+..+..|..++..-+...+....||..|+.++..+.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888888888888888888889999999999999874
No 152
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.60 E-value=9.6 Score=31.62 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+++-..|.+++.|+.++.+|+.+++....-...|..+|..|...+...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~ 58 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQA 58 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 344455566777777777777777776666667777777776655544
No 153
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.23 E-value=14 Score=36.20 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
++++....+++.|++||+.|+.++..+..+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 333334444444444444444444333333
No 154
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=81.22 E-value=0.6 Score=43.46 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+..+.+.+..+++.|++++..++.++..|+.++
T Consensus 146 ~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 146 FLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 155
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=80.87 E-value=4.4 Score=29.66 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+++..+..|+.+...++.++.....+++.|..=...|-.+|..
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIat 46 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIAT 46 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34556666666666666666666666666665555555555544
No 156
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=80.86 E-value=9.8 Score=29.24 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+++.++..+..|+.+...++.++.....+++.|..-...|-.+|...+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999889988887754
No 157
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=80.53 E-value=5.6 Score=28.07 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSEN 312 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 312 (346)
..|...-.+|+..-+.|..-+..|+.++..|+.|.
T Consensus 13 arlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 13 ARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555556666666655554
No 158
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=80.42 E-value=2.5 Score=32.75 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
+|+.+|+.++..|+.++..|+.+++..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777777777777777776666543
No 159
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.30 E-value=14 Score=28.93 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 270 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|.|=++.+..-+.+++.|+.-..+|+.=-..|..-+..|..|-..|...|..|.
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666777777777777777666677777777777777777666665
No 160
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.07 E-value=16 Score=30.23 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+|+.++..|+.....+..++..|..+...|..+...|+.+|..+
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444
No 161
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=79.98 E-value=19 Score=27.99 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
-...++.++..+..|+.+...++.++.....+++.|..=...|-.+|...
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34456677777777777777777777777777777766666666666544
No 162
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=79.76 E-value=24 Score=28.88 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=26.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 257 KRKQSNRESARRSRLRKQAECEELQ---ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 257 RRk~~NRESARRSR~RKk~~leeLE---~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+|..+|+.|-+.--.+=.+....|+ .|+...+.+..+=.+|+.++..+.+.|.+.|-.|..++..
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar 101 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIAR 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555666665532222222222222 2333333333333344444444444454444444444433
No 163
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=79.59 E-value=7.2 Score=28.23 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.++..|..+.+.|..++..|+.+...|+.+...-+++..+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777777766666544
No 164
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=79.44 E-value=14 Score=27.66 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+.+++.|...-..-...+...+.++..|+...+.|..+|..|.|
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45666777766666677777778888888888888888877653
No 165
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=79.17 E-value=11 Score=29.77 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.|..+++.++.|...|+.++..| ..|-.+-+-|..-|..|.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L----~elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 344445555555555555554444 233344455555555554
No 166
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=79.00 E-value=8 Score=39.31 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 270 RLRKQAECEELQARVETLSNENRN----------LRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~----------L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|+.-+.++++|+.+...+..+... |..++..|++++..|+.+...|.++|..
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555544433 4444555555555555555555544443
No 167
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=78.99 E-value=2.7 Score=26.85 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L 301 (346)
.|..-+..|++||.+|+.+++.|
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556665555555444
No 168
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=78.63 E-value=9.1 Score=38.34 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|..++..|++++..|+.+...|.++|..
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 169
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=78.62 E-value=3.6 Score=26.64 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
++..|..+|..|++.|-.-+++++.|+.+|
T Consensus 2 evqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 355677777788888877777777776655
No 170
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=78.60 E-value=0.047 Score=43.90 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 019071 251 RELKRQKRKQSNRESARRSRLRKQ 274 (346)
Q Consensus 251 ~e~KR~RRk~~NRESARRSR~RKk 274 (346)
.-++..||+-+||.+|++||.||.
T Consensus 63 ~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 63 ALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHhhhhHHHHHHcchhhc
Confidence 356678899999999999999985
No 171
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.60 E-value=14 Score=37.57 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
|..++..|++++..|+.+...|.++|.
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433
No 172
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=77.99 E-value=1.8 Score=27.12 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 287 LSNENRNLRDELQRLS 302 (346)
Q Consensus 287 Le~EN~~L~~el~~L~ 302 (346)
|+..|..|++++..|.
T Consensus 5 lkqknarlkqeiaale 20 (28)
T 3ra3_B 5 LKQKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHH
Confidence 3444444444444433
No 173
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=77.85 E-value=3.4 Score=27.64 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENN 313 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~ 313 (346)
+|...++.|+.|++++..|+.+..
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 174
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=77.58 E-value=4.7 Score=26.86 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+|..+++.|-.++..|+.|..+|++-|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344555555555555566666665544
No 175
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=77.32 E-value=16 Score=32.23 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019071 297 ELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 297 el~~L~~e~~~L~~EN~~Lr 316 (346)
+|+.|.+++..|+.+...++
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 176
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=77.32 E-value=29 Score=28.51 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
++.+...|++.+..+.-..-.|+.+...|+++|.-|
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444333444555555555555444
No 177
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=76.81 E-value=5.4 Score=30.47 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 264 ESARRSRLRKQAECEELQARVETL 287 (346)
Q Consensus 264 ESARRSR~RKk~~leeLE~rv~~L 287 (346)
..-|+.|.+=...+++|..-|-.+
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~ 41 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSL 41 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCC
Confidence 334444444455566666655443
No 178
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=76.58 E-value=4.5 Score=40.07 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+.+++|+++++.++.++..|.+++.....+...|.++...|+..+.-
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 33466666677777777777777766666666777777777655444
No 179
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=76.54 E-value=14 Score=29.14 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
-+++.+|.-+|..|+.|-.+...++..-++++..|+.
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455566666666665555544444444444444433
No 180
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=76.22 E-value=1.6 Score=34.01 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
++.|..++..|+..|.+|..|...|
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 181
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=76.13 E-value=3.4 Score=39.42 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 283 RVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 283 rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
+++.|+.+|+.|+.++++|+++.+.+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444444444444444444444
No 182
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=75.80 E-value=28 Score=34.31 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
..|+.++..|++++..|+.+...|.++|..+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666555543
No 183
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=75.56 E-value=11 Score=31.00 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
++.++..++..|..+...|+..+..|.++
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 184
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=75.45 E-value=26 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
...|-...+..++..+..|+.+...++.++.....+++.|..=.-.|-.+|...
T Consensus 20 ~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 20 MEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334445567778888888888888888888888888888777777777776654
No 185
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=75.11 E-value=7.9 Score=34.94 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
.|..++..|..++.....+++.|++
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 186
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=75.01 E-value=8 Score=29.77 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
|...|..|..|+.+|..++..+++++..++.|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777776666655533
No 187
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=74.82 E-value=8.9 Score=34.90 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 327 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~ 327 (346)
+++|+++-.....+...|....+.|+.||..|+..|+.|.|...
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~s 75 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTS 75 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHH
Confidence 34567777777788888888999999999999999999998543
No 188
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=74.66 E-value=0.63 Score=38.50 Aligned_cols=34 Identities=38% Similarity=0.513 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+...|..++..|..+.+.|..||..|+.++..+.
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555443
No 189
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=74.55 E-value=25 Score=35.71 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 270 RLRKQAECEELQARVETLSNENRNLRD-----------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~L~~-----------el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
|+.-+.++++|+.+...+..+...|+. +...|.++...|..+...|.+++..+. +.+..+...++.
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~--~~l~~~l~~iPN 155 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE--EQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 333344455555555555555544432 233455555555555555555555555 445555555554
No 190
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=74.03 E-value=16 Score=28.73 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+++|+.+..+.+.....-+.+|..|+++++.-..|...|..+|
T Consensus 35 v~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 35 VEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 191
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=74.02 E-value=1.2 Score=43.05 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
++|..||.+|..++++...|+..++.|+.+++.|+.....|+.+|...
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~ 51 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 51 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 466777888888888888888888888888888887777777766543
No 192
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=74.01 E-value=1.7 Score=36.09 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQR 300 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~ 300 (346)
.-+|+|+.++..|+-||..|+++|..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999863
No 193
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=73.92 E-value=7.6 Score=34.84 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
.++-|=..+..|+.+|..|++++++|+.+.++
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444444443
No 194
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=73.91 E-value=9.5 Score=29.35 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSE-NNSIKEDLSR 321 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E-N~~Lr~~L~~ 321 (346)
+|...|..|..|+.+|..++..+.+++..+..| ...|++.|..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek 46 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEK 46 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888777766533 2234444444
No 195
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.64 E-value=8.6 Score=24.87 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L 301 (346)
.|.+++..|+.|...|+-++..|
T Consensus 6 alkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 196
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.45 E-value=13 Score=45.81 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+..+|.++|..|+++++.+..|...|+.+++
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 197
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.24 E-value=39 Score=32.77 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|..++.+.+.+++.|+.|...|..+|+.++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444556666666666666665554
No 198
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=73.09 E-value=7.9 Score=37.39 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
.+..|+.+++.++...++|..+|..|+
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 199
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=73.05 E-value=7.2 Score=26.53 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|-.++...-++...|+.+|..|..+|..
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445556666677777666643
No 200
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=72.98 E-value=9.5 Score=34.19 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L 301 (346)
.+|++++..|+.+|+.|+.+.+..
T Consensus 155 ~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 155 AENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 201
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=72.98 E-value=10 Score=27.92 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLS 302 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~ 302 (346)
-..|-.+|..|+..|.+..+|+.+|.
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788899999999998888888883
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.72 E-value=6.3 Score=39.19 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
.++..|+++++.|+.++..|+.++..|++++..++.|...|+.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456788888999999999999999999999999999888764
No 203
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=72.50 E-value=18 Score=33.07 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhcchhhcCCC
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG--PEAVANLEQSNPT 337 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g--~~~~s~L~~~~~~ 337 (346)
++-+.|..+|+.|+.|+..|+.++..|+ .|..+.+-|..-|.+|.+ ++.+-.|..+.++
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLk----eLae~~q~la~vi~~l~~~~~~~~e~~~~~~~d 175 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELA----EVAEHVQYMAELIERLNGEPLDNFESLDNQEFD 175 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcccccCchhhhcc
Confidence 3445566666666666666666665553 334444555555666654 3334444444433
No 204
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=72.37 E-value=8.6 Score=25.90 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+|..+++.|..+...|+.|..+|++.|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444555555555555566666655544
No 205
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=72.35 E-value=30 Score=27.56 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+++.++..+..|+.+...++.++.....+++.|..-.-.|..+|...
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777777776667766666666666555543
No 206
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=72.09 E-value=16 Score=31.13 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
.++|+.++..|+..|..|..++..++.+...|
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888777666444
No 207
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.94 E-value=13 Score=29.39 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 286 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.|+.....|..++..|..++..+..+...|+..|..+.+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555666667777777777777777777777766543
No 208
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=71.72 E-value=40 Score=34.28 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
++.++||.++.-|+.....--..|..|+.-++.++.+.++|..-|
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776666444333666666666666666666655443
No 209
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=71.57 E-value=3.1 Score=32.01 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019071 302 SEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 302 ~~e~~~L~~EN~~Lr~~L~~L 322 (346)
...+..|..+|.-||++|..|
T Consensus 42 EatnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 42 EATNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 210
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=71.51 E-value=28 Score=25.71 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..-+.+|+.++..++.-...|..+++.+.-+++.+..++..=++.+..|.
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le 54 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34456677777776666666666666666666655544433344444443
No 211
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=71.36 E-value=5.9 Score=30.17 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
..|...+.+||..+..-..++.+|+.++.+++.-+
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888888887776664433
No 212
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=71.15 E-value=14 Score=36.24 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.|=+...+.|..+++.|......|..+++.....+..|..+...|+-+|.+|+.
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 344455566677777777777777777776666666777777777666666553
No 213
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=70.97 E-value=50 Score=28.41 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 297 ELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 297 el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
+....-..++.|..||..++++|.-.+.+
T Consensus 134 K~~E~MdSFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 134 KAAENMDSFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 33444456789999999999999877643
No 214
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.96 E-value=9.6 Score=37.78 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
++.++||+++..|+.....-...|..|+..++.++.+.++|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777776554433366666666666666666665554
No 215
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.90 E-value=3.1 Score=41.50 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.+++..|+........+|..|+..+..+......|+.+|..|.
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444443333334444444444444455555555544443
No 216
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=70.56 E-value=5.3 Score=26.50 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
|..+++.|..++..|+.|..+|++
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444444444444444444443
No 217
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=70.39 E-value=27 Score=25.34 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+..+..|+.++..++.+.+....+.+.|-.-...|..|....+.-|+
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 56678899999999999999999999999999999999998887765
No 218
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=70.31 E-value=16 Score=32.62 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+..+++..+++++.| |..|+++|..|
T Consensus 184 ae~el~~ak~~ye~l---n~~L~~eLp~l 209 (251)
T 2fic_A 184 AEEELIKAQKVFEEM---NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333444444444433 45555555544
No 219
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=70.12 E-value=3.8 Score=29.61 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el 298 (346)
..+++.|+.++..|+.++..|+..|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888888888887777654
No 220
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=69.93 E-value=4.3 Score=25.94 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 019071 301 LSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 301 L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|..-+..|+.||.+|+.++++|-
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888888877763
No 221
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=69.83 E-value=19 Score=29.42 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
+.|+.+++.|+.....|+.++..+.+.++++
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444444
No 222
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.54 E-value=39 Score=29.41 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 300 RLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 300 ~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
..+.+...++..|..|+.+|..-.+
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql~e~~~ 129 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQLREKDT 129 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566677778888887777653
No 223
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=69.42 E-value=8.3 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+|..+++.|-.+...|+.|..+|++-|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 224
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=69.37 E-value=22 Score=36.04 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 298 LQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
...|++++..|+.+...|.++|.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 225
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=69.19 E-value=16 Score=32.56 Aligned_cols=35 Identities=9% Similarity=-0.011 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSEN 312 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 312 (346)
..-++.|..|+.+|..|..++...++++..+..+.
T Consensus 131 ~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 131 CYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444443
No 226
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=68.46 E-value=22 Score=36.58 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 264 ESARRSRLRKQAECEELQARVET 286 (346)
Q Consensus 264 ESARRSR~RKk~~leeLE~rv~~ 286 (346)
|.|+|-=+|-+++|++.+.-++.
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~ 339 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVAR 339 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 227
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=68.02 E-value=16 Score=26.22 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
+||.+-+++|.. |+.+...|+.++ .++.+.+|..+..+|
T Consensus 6 rrr~e~ld~l~~----LEkqF~~LkEql--Y~ERl~ql~~~Leel 44 (49)
T 2xus_A 6 RRRSECVSEMLD----LEKQFSELKEKL--FRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 556666666543 667777776655 334444444444444
No 228
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=67.83 E-value=30 Score=34.08 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 299 QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 299 ~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
..|.++...|..+...|.+++..+. +.+..+...++.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 103 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKE--ARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 3444555555555555555555554 445545444544
No 229
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=67.35 E-value=13 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.328 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
|..+++.|..+...|+.|..+|+..|.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 444444444444555555555555443
No 230
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=66.99 E-value=34 Score=27.05 Aligned_cols=51 Identities=8% Similarity=0.022 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 275 AECEELQARVETLSNENRNLRDE------------LQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~e------------l~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
.++..|+.++..|+.+...|..+ .-.+-.++..++.--..|-..|..++|.
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv 70 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKC 70 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 44455555555555555554432 2222334444444445566666666653
No 231
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=66.71 E-value=52 Score=31.05 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=51.3
Q ss_pred HHHHhHH-HHHHHHHHHHHHHHHHHH------HH----------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 258 RKQSNRE-SARRSRLRKQAECEELQA------RV----------ETLS---NENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 258 Rk~~NRE-SARRSR~RKk~~leeLE~------rv----------~~Le---~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
+++...+ ++++++.+=...++++++ +. ..|+ ..-++|+.+++.....+.....+-..++.
T Consensus 126 Kk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~ 205 (279)
T 3qwe_A 126 KRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQ 205 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 678888888888888874 10 1122 22344788888888888888888888998
Q ss_pred HHHHhcCCchhcchhhc
Q 019071 318 DLSRLCGPEAVANLEQS 334 (346)
Q Consensus 318 ~L~~L~g~~~~s~L~~~ 334 (346)
+|.... +..|+.|...
T Consensus 206 eL~~tk-~~~v~~Lr~L 221 (279)
T 3qwe_A 206 DLEIAK-QRIVSHVRKL 221 (279)
T ss_dssp HHHHHH-HHHHHHHHHH
T ss_pred HHHHhh-HHHHHHHHHH
Confidence 888764 6666655443
No 232
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=66.60 E-value=20 Score=28.38 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.+.+...|..++..|+.++..|..+...|+.++.
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555
No 233
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=66.39 E-value=10 Score=25.20 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
|..+++.|-.+...|+.|..+|++-|
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44444444444455555555555433
No 234
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.21 E-value=5.8 Score=39.53 Aligned_cols=46 Identities=39% Similarity=0.431 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+|+.|+..|+.|...|+.++.+++.++..|+.+..++++++..+..
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~ 74 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQ 74 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444444455555555666666666666666666666666666554
No 235
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=65.95 E-value=35 Score=26.59 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 280 LQARVETLSNENRNLRDE-------LQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~e-------l~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+-.+|+.|-.||.+|..- -+.|-.+.+.|..|+..|+.+|..++
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555554332 12233444555555555555555543
No 236
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=65.91 E-value=20 Score=28.35 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
+-+.|..+|+.|+.|+..|+.++..|++
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666555555544
No 237
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=65.81 E-value=14 Score=24.01 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
.||+.+..|..-.++|++++.+|.+..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677777777777776665443
No 238
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=65.51 E-value=23 Score=33.02 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
..++.+|..+++.|...-..+.++|..|+++=..|+.++..++.+|..++-
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999988863
No 239
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=65.19 E-value=31 Score=35.06 Aligned_cols=12 Identities=8% Similarity=0.183 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 019071 286 TLSNENRNLRDE 297 (346)
Q Consensus 286 ~Le~EN~~L~~e 297 (346)
.|+++-..+.++
T Consensus 51 ~l~~~rn~~sk~ 62 (485)
T 3qne_A 51 EHNKKLNSVQKE 62 (485)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 240
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=65.14 E-value=8.6 Score=27.48 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
+-..||.-|..|+..|..|...+..|.+.+..|+..
T Consensus 18 enaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 334566667777777777777777776666665543
No 241
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=65.11 E-value=6.5 Score=24.41 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDEL 298 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el 298 (346)
|..+|-.|+.|...|+.++
T Consensus 5 lkdevgelkgevralkdev 23 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHH
Confidence 3333444444333333333
No 242
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=65.08 E-value=11 Score=34.73 Aligned_cols=41 Identities=10% Similarity=0.292 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
++..|+++++..+.|+..++..+...++....|+..-..+.
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56777788888887777777777766666666665555443
No 243
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=64.79 E-value=6.5 Score=28.54 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 299 QRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 299 ~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..+.++++.|..||..|+++|..|.
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666666554
No 244
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=64.79 E-value=32 Score=27.60 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+..+|..+..+++.|+.+...|...|..+.
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777788888877777777774
No 245
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=64.40 E-value=17 Score=26.82 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 019071 279 ELQARVETLSN 289 (346)
Q Consensus 279 eLE~rv~~Le~ 289 (346)
.|+.+|..|+.
T Consensus 6 aleekvkalee 16 (67)
T 1lq7_A 6 ALEEKVKALEE 16 (67)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 246
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.36 E-value=60 Score=26.79 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
..+..++..+..|+.+...++.++.....+++.|..=.-.|..+|...
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666555666555443
No 247
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=64.28 E-value=8 Score=25.02 Aligned_cols=24 Identities=21% Similarity=0.482 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 299 QRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 299 ~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+|.++..+.+.||-+|.+++.+|
T Consensus 4 aqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344445555555666665555554
No 248
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.76 E-value=57 Score=26.37 Aligned_cols=44 Identities=18% Similarity=0.373 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.|+.++...+.+...|..++..-+......+.++..|..+|+.|
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444333333333333344444444444333
No 249
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=63.71 E-value=5.3 Score=41.13 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+..+|+.++..++.+......+|....+....|..+.....++-..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~ 381 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEE 381 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888777776666666555555555554444444333
No 250
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=63.47 E-value=45 Score=30.87 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=15.5
Q ss_pred HHHHHHHHhHH-HHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRE-SARRSRLRKQAECEEL 280 (346)
Q Consensus 254 KR~RRk~~NRE-SARRSR~RKk~~leeL 280 (346)
|-.=.-++||| |-+.+|.||+.-..++
T Consensus 93 R~~LK~IR~~E~svqp~R~~R~~l~~~I 120 (234)
T 3plt_A 93 RVTLKSIRNIEASVQPSRDRKEKITDEI 120 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33445677888 4566666665443333
No 251
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.07 E-value=53 Score=27.13 Aligned_cols=15 Identities=0% Similarity=0.151 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 019071 305 CEKLTSENNSIKEDL 319 (346)
Q Consensus 305 ~~~L~~EN~~Lr~~L 319 (346)
+..|+.+...+|.++
T Consensus 86 i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 252
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=62.93 E-value=77 Score=32.06 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhHHHH
Q 019071 251 RELKRQKRKQSNRESA 266 (346)
Q Consensus 251 ~e~KR~RRk~~NRESA 266 (346)
++++..-..+.|+.+.
T Consensus 103 qeLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 103 RDLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhH
Confidence 4444444555555443
No 253
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.90 E-value=37 Score=33.88 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 274 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~---el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
+.++++|+.+...+..+...|+. +...|.++...|..+...|.+++..+. +.+..+...++.
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 108 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK--KKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 33444444444444444443322 133455555566666666666666665 445555555555
No 254
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=62.85 E-value=13 Score=29.34 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
+++.+++.+...|+..|..|..+++.|+.+
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344455556666666666666666555433
No 255
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=62.74 E-value=10 Score=25.30 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
|..+++.|-.++..|+.|..+|++
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444444444444444443
No 256
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=62.60 E-value=46 Score=26.02 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
|..+|+.++.++..|+.++..| ..|..+-..|.+-|..|
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L----~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 3334444444444444433333 23333444444444443
No 257
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.26 E-value=65 Score=26.47 Aligned_cols=46 Identities=11% Similarity=0.312 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+..++..+..|+.+...++.++.....+++.|..=.-.|..+|...
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555443
No 258
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=62.25 E-value=19 Score=28.07 Aligned_cols=35 Identities=9% Similarity=0.203 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|+.....|..++..|..++..++.+...|+..|..
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555554443
No 259
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=62.21 E-value=17 Score=24.08 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+|..+++.|-.++..|+.|..+|++-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344555555555555555555555443
No 260
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=62.04 E-value=41 Score=27.67 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
.++..++.+...|..++..|+..++.|+.|
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 261
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=61.83 E-value=34 Score=28.97 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
+.+|+.....|+.++..++.+...|
T Consensus 59 ~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 59 KQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 262
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=61.74 E-value=82 Score=32.40 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
++.+|++++++++|..+-.+-+.++++...
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777666655555555554433
No 263
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=61.71 E-value=5.8 Score=33.63 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
+|..+|+.|..++.+|+++++.|+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666555444
No 264
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=61.46 E-value=12 Score=24.95 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
|..+++.|-.+...|..|..+|++-
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4444444444444455555555443
No 265
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=60.61 E-value=48 Score=25.38 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
..||.++....+-+..|+.++.-++..+..|
T Consensus 27 gslR~KLiKYtelnKKLe~~~~~~q~s~~~l 57 (74)
T 2q6q_A 27 ETLRSKLEKYVDITKKLEDQNLNLQIKISDL 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3344444444444445555555554444444
No 266
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=60.44 E-value=17 Score=33.54 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLS 302 (346)
Q Consensus 290 EN~~L~~el~~L~ 302 (346)
+|..+..++..|.
T Consensus 97 ~Ne~l~~~~~~l~ 109 (252)
T 3e98_A 97 ENDRLFDKTRRLV 109 (252)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 267
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=60.16 E-value=23 Score=23.24 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
..|++++..|++++..|.-....|++++..|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466667777777777777777777777665
No 268
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.07 E-value=60 Score=28.24 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019071 301 LSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 301 L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
++.++..|+.+...-...|..+
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444433333333333
No 269
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=59.93 E-value=44 Score=30.98 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 298 LQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+..++.+++.++.+...++.+|.
T Consensus 124 ~~~a~a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 124 LNNAKAEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 270
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=59.67 E-value=24 Score=27.22 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.++.++..+++.|...-..+..++..|.++-..|+.+...+..+|..++
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888887777778887777777777777777766665543
No 271
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.42 E-value=72 Score=26.07 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
.+|..+..|+.....+.-.--.|..+++.|+.|...|
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333333333334444443333
No 272
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=59.38 E-value=60 Score=25.13 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
..-+..+..|+.++..++.+......+.+.|-.-...|..|....|.-|+
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 44566778888999999998888888888888888888998888887665
No 273
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=59.30 E-value=17 Score=26.04 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
+..|+.|..|+.+...|..++..-+.++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~ 35 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKY 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444555555555554444444333333
No 274
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=59.24 E-value=3.5 Score=29.48 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
..|..+|.-.-.||..|..-+.+|...+..|+.....|...|..|
T Consensus 6 aqlknrvayklkenaklenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 6 AQLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 344444444445777777777666666666655555555554444
No 275
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=59.21 E-value=83 Score=27.00 Aligned_cols=31 Identities=19% Similarity=0.084 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
.+|+..|+.+++.-..-...|..-...+++.
T Consensus 85 ~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~ 115 (152)
T 4fla_A 85 AEYNGRLAAELEDRRQLARMLVEYTQNQKDV 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333333333333333
No 276
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=58.42 E-value=23 Score=23.60 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+|..+++.|-.++..|..|..+|++-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 277
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=58.28 E-value=36 Score=30.79 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
+|++++..|+.+|..|..+++.|..+++.+..
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 278
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=58.25 E-value=18 Score=35.72 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
|..++..|++++..|+.+...|.++|..+
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 279
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=58.24 E-value=55 Score=24.40 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 019071 291 NRNLRDELQRLSEEC 305 (346)
Q Consensus 291 N~~L~~el~~L~~e~ 305 (346)
...|+.+|..|+.++
T Consensus 43 lr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 43 LRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 333333333333333
No 280
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=58.21 E-value=37 Score=31.30 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.+..++..|+...+.++.|.+.++.++++.+.+..+||++-.
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555555555555554433
No 281
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=58.04 E-value=21 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
|.+++.++-.+++..+.+...|+.++..|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 282
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=57.88 E-value=66 Score=25.89 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.+.-|+.+++..+..-..=|.--+++..+.+.|..++..|+.++..|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666777777777766655555555555555555555555555554444
No 283
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=57.21 E-value=19 Score=27.52 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+.+.+..+++.|+.|-.-.-.+|..+..-|+....++..|..+|..
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ 62 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4445555555555555544445555555555555454444444443
No 284
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=57.17 E-value=1.1e+02 Score=27.92 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLS 288 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le 288 (346)
++...++.+.+..|+-|-+...++++.++.|..++...-
T Consensus 99 ~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka 137 (235)
T 2odv_A 99 EKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEA 137 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999988888877666433
No 285
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=56.82 E-value=27 Score=34.73 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+++..||..+...+.+...|+..+..++.+++.|+.....|..+|..
T Consensus 90 l~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 90 IEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 345666667777777777777777777777777777777777665544
No 286
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=56.81 E-value=6 Score=32.85 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 298 LQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 298 l~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
++.|..++.+|+.||..||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777778888999999988865
No 287
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.76 E-value=11 Score=37.60 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
.+++..||..+...+.....|+..+......+..|+.....|..++.
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444455555555666666666666666666666666655555543
No 288
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=56.72 E-value=64 Score=24.69 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+|..++..-+.|...|..-+..|+.++.....=|..|..++.-+
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~ 50 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNL 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444555555555555555555555555554444333
No 289
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=56.56 E-value=4.8 Score=37.24 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019071 286 TLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~ 306 (346)
.|.+||++|++|+..|+.+..
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLES 43 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666655544433
No 290
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=56.54 E-value=26 Score=27.63 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
-+|+..|+.++..+..+ .. +...|+..|..|..++.+|+
T Consensus 38 vdYI~~Lq~e~~r~~e~-------e~----r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDL-------EN----RQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHTHHHHHHH-------HH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HH----HHHHhhhhhHHHHHHHHHHH
Confidence 45666665544443333 22 22556677777776666654
No 291
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=56.44 E-value=14 Score=29.39 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
+.|+.++..|+.+...|..++..++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666643
No 292
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.43 E-value=38 Score=27.89 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
+++.|+.++..|+.........+..|..+.+.|.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 4455555555554444443333334433344443
No 293
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=56.18 E-value=52 Score=26.46 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNS 314 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~ 314 (346)
|+++++.|.++++.|..+...
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333
No 294
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=56.17 E-value=1.1e+02 Score=27.09 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|+.+...|+.........+..-++.++..+.+....+.++.+
T Consensus 83 lrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eK 124 (169)
T 3k29_A 83 VAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEK 124 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333333333333333333333
No 295
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=56.00 E-value=14 Score=31.27 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+|..+++.|.+++..|+.|+..|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666555544
No 296
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=55.88 E-value=19 Score=33.38 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
++++|.++..|+..+.++.+..+.....+..++.....|
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333333333333
No 297
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=55.84 E-value=77 Score=25.67 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhc
Q 019071 302 SEECEKLTSENNSIKEDLSRLCGPEAVA 329 (346)
Q Consensus 302 ~~e~~~L~~EN~~Lr~~L~~L~g~~~~s 329 (346)
+.+++.|+.|...|..+|....-...++
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~~~~~~~ 93 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLRIQKETS 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446666677777777766665433333
No 298
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=55.67 E-value=97 Score=26.63 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 263 RESARRSRLRKQAECEELQARVETLSNENRNLRD------------ELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 263 RESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~------------el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
|..--.++.+=-...+.|=.+|+.|+.-.+.||. +++.+.+++..+..+...|.+.|
T Consensus 9 R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i 77 (141)
T 3okq_A 9 RMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFI 77 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444433 44555555555555555554443
No 299
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=55.56 E-value=26 Score=23.33 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+|..+++.|-.+...|..|..+|++-|.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4455555555556666666666665543
No 300
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=55.33 E-value=6.3 Score=28.73 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLR 295 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~ 295 (346)
..++++||.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888777665553
No 301
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.32 E-value=37 Score=26.37 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..|..+++.+..++..|..+...|..++..+.
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666666666666654
No 302
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.26 E-value=55 Score=25.15 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
-+..+..|+.++..++.+......+.+.|-.-...|..|....|.-|+
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 345566777777777777777777777777777777777776665543
No 303
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.17 E-value=74 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..|..+++.+..++..|..+...|..++..+.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777765
No 304
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=55.10 E-value=9.1 Score=31.10 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CchhcchhhcCCC
Q 019071 299 QRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 337 (346)
Q Consensus 299 ~~L~~e~~~L~~EN~~Lr~~L~~L~g-~~~~s~L~~~~~~ 337 (346)
.+|+.++..|+.|...|+++|..|+. +..+.++...+++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~ 49 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILED 49 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecC
Confidence 44455555555555666666666655 4446666655554
No 305
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=55.04 E-value=85 Score=25.60 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q 019071 287 LSNENRNLRDELQRLSEECEKL-------TSENNSIKEDLSRL 322 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L-------~~EN~~Lr~~L~~L 322 (346)
|+..+.+|...|..|.++--.| .-|...|+.++.+|
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 4444444444444444443333 34555555555555
No 306
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=54.83 E-value=16 Score=25.47 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 283 RVETLSNENRNLRDEL 298 (346)
Q Consensus 283 rv~~Le~EN~~L~~el 298 (346)
+-+.|+.+...|..++
T Consensus 17 r~e~LE~Ri~~LE~KL 32 (43)
T 2pnv_A 17 RSEDFEKRIVTLETKL 32 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3333333333333333
No 307
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=54.63 E-value=35 Score=26.28 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
|..++..|+..+..-...-+.|-.++-.|.-|+.-|......|+
T Consensus 30 Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 34445555555444444444455555555555555554444443
No 308
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=54.46 E-value=36 Score=27.36 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 329 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s 329 (346)
+-+.|+-.+|..++...- -..+|..|..++.+|..|...+..+|..|-|++-.+
T Consensus 32 qvikEIs~Kv~~Iqn~~L-~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~~ 85 (92)
T 1x4t_A 32 QIIGEISKKVAQIQNAGL-GEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGK 85 (92)
T ss_dssp HHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTT
T ss_pred HHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 345555666665544211 124678888888999999999999999999987544
No 309
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=54.39 E-value=23 Score=31.81 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019071 283 RVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 283 rv~~Le~EN~~L~~el~~L~~ 303 (346)
++..|+++|..|++|.++|.+
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 310
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=54.06 E-value=11 Score=30.58 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 285 ETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
.+|+.+...|++++..|+++++.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 311
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=53.70 E-value=61 Score=25.51 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Q 019071 276 ECEELQARVETLSNENRNL--R-DELQRLSEECEKLTSENNS-IKEDLSRLC 323 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L--~-~el~~L~~e~~~L~~EN~~-Lr~~L~~L~ 323 (346)
.+++++.-|.+++-|...+ - ..-..+..++...+.+... |+.+|.+|.
T Consensus 42 ~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 42 QQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444445555554444 1 1123445566666777777 777777664
No 312
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=53.26 E-value=89 Score=25.30 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 287 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|+.+...=..+|..|+..++.+..++..|..+|..+.
T Consensus 59 lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 59 LKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444344444455555556666666665555543
No 313
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=53.16 E-value=28 Score=29.23 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L 301 (346)
+.|+.+++.|+.....|+.++..+
T Consensus 108 ~~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 108 KEYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 314
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=53.10 E-value=37 Score=27.78 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
++.|.+|..++..|+.|--.|..++..-.-++..|......|
T Consensus 48 ~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 48 RDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 356677777777777777777777777777777777776666
No 315
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=52.95 E-value=45 Score=26.91 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.+|+.+++.|+.+...|.. +..+...|+.+-..|..+|+.+
T Consensus 50 ~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHH
Confidence 4566666666666654322 2233344444444444444443
No 316
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=52.81 E-value=35 Score=29.81 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVE 285 (346)
Q Consensus 271 ~RKk~~leeLE~rv~ 285 (346)
++|+++|.+|..+..
T Consensus 22 ~~K~~~LqeL~~Q~v 36 (155)
T 2aze_A 22 KQKQSQLQELILQQI 36 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666654443
No 317
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=52.63 E-value=53 Score=23.39 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+.+.-+.....|..+|..|..++..-+.++..+.++|..
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444445555555555555544444444444444443
No 318
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.62 E-value=82 Score=24.68 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 272 RKQAECEELQARVETLSN-------------------ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~-------------------EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+-+.+++.|+..+..|+. .......++..++.++..|..+...|..++..|.
T Consensus 28 ~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 28 ELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666543 2334556666666777777777777766666665
No 319
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=51.93 E-value=53 Score=27.37 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
|+.+++.|+.+...|...+..|...+..++
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333
No 320
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=51.90 E-value=56 Score=29.70 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 270 RLRKQAECEELQARVETLS-------NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le-------~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
|.+|+--.+....+++.|+ ........+++..+++++.| |..|+++|-.|
T Consensus 139 R~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~l---N~~L~eELP~l 195 (243)
T 4a3a_A 139 RSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEF---NVDLQEELPSL 195 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 321
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=51.83 E-value=47 Score=27.01 Aligned_cols=40 Identities=13% Similarity=0.319 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
+.|+++++.|+.....|...+..+++++..+..+.+++..
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566677766666666666666666666666655555543
No 322
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=51.72 E-value=95 Score=30.77 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhHH
Q 019071 250 ERELKRQKRKQSNRE 264 (346)
Q Consensus 250 E~e~KR~RRk~~NRE 264 (346)
|++++....+++|+.
T Consensus 62 er~~~~rIe~L~~~L 76 (390)
T 1deq_A 62 DQDFTSRINKLRDSL 76 (390)
T ss_pred hhhHHHHHHHHHHHH
Confidence 455555555666654
No 323
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=51.55 E-value=44 Score=32.32 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLR 295 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~ 295 (346)
+++++|+.+++.|+.+..+|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777776666664
No 324
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=51.55 E-value=31 Score=31.38 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
+++++|..++..|.++...++++..+=++
T Consensus 73 ~e~~el~d~~lR~~AEfeN~RkR~~rE~e 101 (213)
T 4ani_A 73 AKLSEMEHRYLRLYADFENFRRRTRQEME 101 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544333
No 325
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=51.05 E-value=85 Score=28.71 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 296 DELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 296 ~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.++..++.+++.++.+...++.+|..+
T Consensus 121 ~~~~~~~a~l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 121 TEMAVKQAQIGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 326
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=50.68 E-value=23 Score=22.62 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019071 301 LSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 301 L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
|.++|..|++..+.|..+|+.|
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 327
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.19 E-value=17 Score=35.94 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhcchhhcCCC
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLEQSNPT 337 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~-~~~s~L~~~~~~ 337 (346)
+.+++++.++..+......|.. +...|..+...|++++..|+.. ..+..+...+++
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~~-------~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~ 81 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLEA-------QRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSD 81 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecC
Confidence 3455555555554444444444 4444555555666666666653 334444444443
No 328
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=50.14 E-value=47 Score=25.03 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019071 299 QRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 299 ~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
..|++++.+|..|...|...|.
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555444
No 329
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.97 E-value=32 Score=29.59 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
+++..|+.||.....++....++.+.|..
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~ 120 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444443333
No 330
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.97 E-value=34 Score=28.69 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
+++..|+.||.....++....++.+.
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ 117 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEK 117 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444444333333
No 331
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=49.92 E-value=82 Score=25.03 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
..|++.|.+++..++..+.-..+|.-|+..+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555556666666666666555555554443
No 332
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=49.92 E-value=40 Score=28.66 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhcC
Q 019071 309 TSENNSIKEDLSRLCG 324 (346)
Q Consensus 309 ~~EN~~Lr~~L~~L~g 324 (346)
.-|...|+.++..|+|
T Consensus 92 ~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 92 ITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHc
Confidence 3456666666666665
No 333
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=49.64 E-value=60 Score=22.29 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLR 295 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~ 295 (346)
.+|..-++.|+..|.+|+
T Consensus 6 kelknyiqeleernaelk 23 (46)
T 3he4_B 6 KELKNYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 344444555555555443
No 334
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=49.39 E-value=84 Score=29.08 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEEC--EKLTSENNSIKEDLSR 321 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~--~~L~~EN~~Lr~~L~~ 321 (346)
..+..||+++..++.++.....+|..++++. +.+..+-..|.+..++
T Consensus 131 ~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK 179 (234)
T 3plt_A 131 TKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEK 179 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777776666776666553 2344444445444444
No 335
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=49.29 E-value=69 Score=22.83 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSE 303 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~ 303 (346)
+-.+.|-.+|..|+..+.++.+|+.+|+.
T Consensus 11 e~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34466777777787777777777777643
No 336
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=48.99 E-value=35 Score=32.01 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSE 311 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 311 (346)
+++|+..+..+..+...|..++..|++++..|+.+
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444444444444444444444
No 337
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=48.95 E-value=62 Score=28.47 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 019071 291 NRNLRDELQRLSEEC 305 (346)
Q Consensus 291 N~~L~~el~~L~~e~ 305 (346)
...|.+|+..|+.++
T Consensus 115 I~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 115 INAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 338
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=48.81 E-value=1.3e+02 Score=29.62 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 302 SEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 302 ~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
..+...|..+...|.+++..+. +.+..+...++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 107 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVE--EELKNTLLWIPN 107 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 4445555556666666666655 445555555554
No 339
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=48.71 E-value=25 Score=33.81 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
|+.+++.|++++..|+.+...|+..|
T Consensus 33 Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 33 MKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444443
No 340
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=48.58 E-value=74 Score=23.00 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
+.++..++.-...|..++..+.-+.+.+
T Consensus 11 e~k~~~~e~iv~~l~~~v~~~~~~le~~ 38 (66)
T 3m0a_A 11 EKKTATFENIVCVLNREVERVAMTAEAC 38 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 341
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=48.48 E-value=51 Score=33.69 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
+.+++.+-+.+++||+.++++....+..++
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye 65 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYE 65 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666666655544433
No 342
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.10 E-value=54 Score=25.31 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRN------LRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~------L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
..|+.||.++..|+.+... =..++..|..++..+..+...+.++=..|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888877643 13456666677777777777666654443
No 343
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=48.07 E-value=61 Score=28.59 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.|+..+.....+|..|-.++..|+-++..|...-.....+|...
T Consensus 113 ~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~ 157 (170)
T 3l4q_C 113 TKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc
Confidence 344555555566666777777777777777776666666666554
No 344
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=48.04 E-value=1.3e+02 Score=30.55 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=18.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 302 SEE-CEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 302 ~~e-~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
.++ ...|..+...|.+++..+. +.+..+...++.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~--~~~~~~l~~iPN 143 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLE--EERDKLMLNVGN 143 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 344 5555566666666666655 444444444444
No 345
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=47.70 E-value=34 Score=32.46 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
.++++.|+.+.+.|+.|.++|..++..+.+...
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~ 216 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANA 216 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 567888888888888888888887777766533
No 346
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=47.39 E-value=34 Score=22.72 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 297 ELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 297 el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
.-..|..+.+.|+..+..|+.+|+.|
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555566666666666554
No 347
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=47.33 E-value=1.2e+02 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
.+.|+.....|..++..|+.....|..
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333333
No 348
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.02 E-value=43 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
++|-++++....|...-+.+|..|+.....|+.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666555543
No 349
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=45.87 E-value=39 Score=31.36 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 286 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
..+.+...++.++..++.++..++.+...++.+|..
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555566666666666666666666666544
No 350
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=45.79 E-value=50 Score=27.43 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
+++.+|+.+|+.++..++.|++-....
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~k 30 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTK 30 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766666555443
No 351
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=45.77 E-value=57 Score=30.83 Aligned_cols=51 Identities=12% Similarity=0.295 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
...--..++.+|..+|..++.+-.++.+.++.+...+..|+.|..+++..|
T Consensus 210 an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (268)
T 2yo3_A 210 ANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLI 260 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344456677888888888888888888888888888888888888776443
No 352
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=45.77 E-value=42 Score=27.41 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 286 TLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L 308 (346)
.|+..+.+|...|..|.++--.|
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Confidence 34444444444444444443333
No 353
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=45.73 E-value=67 Score=30.07 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEE 304 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e 304 (346)
+.+|+.+++.|+.+...+..++..+.++
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 354
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=45.52 E-value=1.2e+02 Score=26.14 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcc
Q 019071 295 RDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 330 (346)
Q Consensus 295 ~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~ 330 (346)
+..+..+..++..|+.++..|..++.+|.....|++
T Consensus 79 r~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIse 114 (146)
T 2xnx_M 79 RNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISD 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Confidence 334444445555555555566666666655444443
No 355
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=45.39 E-value=1.2e+02 Score=24.52 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+...++.|..++..-..+...|+..+..+......|...+..|..+...|..
T Consensus 51 eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 51 EQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777777778888888877777777777777777666653
No 356
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.33 E-value=34 Score=33.86 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
++.+..|+.+...|..++..+++++..
T Consensus 38 ~~~~~~l~~~~~~l~~~~~~~~~e~~~ 64 (405)
T 4b4t_J 38 TENVRRLEAQRNALNDKVRFIKDELRL 64 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666555544443
No 357
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=45.02 E-value=1.1e+02 Score=28.30 Aligned_cols=51 Identities=12% Similarity=0.315 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 274 QAECEELQARVETLSNENR----NLRDE-LQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~----~L~~e-l~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.++.++++.++..|..-.- .++.+ +...++.+..|+.|+..-+.+|...+-
T Consensus 37 MkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~ 92 (239)
T 3k66_A 37 MKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHE 92 (239)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4566777777777776542 23322 344566677777777777777776653
No 358
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=44.97 E-value=92 Score=24.90 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECE----KLTSENNSIKEDLSRLC 323 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~----~L~~EN~~Lr~~L~~L~ 323 (346)
+.|.++..--.|.+.++..|-.|..... ..+.|..+||.+|+...
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444333 33567888888887654
No 359
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.67 E-value=11 Score=23.53 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 019071 287 LSNENRNLRDEL 298 (346)
Q Consensus 287 Le~EN~~L~~el 298 (346)
|+.....|++++
T Consensus 12 leqkiaalkqki 23 (28)
T 3ra3_A 12 LEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 360
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=44.32 E-value=39 Score=29.95 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
.-..|+..+..|.++.+.|..+...|++
T Consensus 57 g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 57 DKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444
No 361
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=44.28 E-value=1.7e+02 Score=26.03 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 248 QDERELKRQKRKQSNRESARRSRLRKQAEC-EELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 248 ~DE~e~KR~RRk~~NRESARRSR~RKk~~l-eeLE~rv~~Le~EN~~L~~---el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.++.-+-++--++-|+.+....|..|-.++ +....-+..-+.-+..|.. .+......++.|+.....+..+|..|.
T Consensus 65 lG~~SlTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~ 144 (201)
T 3u0c_A 65 LGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELD 144 (201)
T ss_dssp HCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444556666666667777777776655 1112222222222222222 233345556666666666666666664
Q ss_pred C
Q 019071 324 G 324 (346)
Q Consensus 324 g 324 (346)
.
T Consensus 145 P 145 (201)
T 3u0c_A 145 P 145 (201)
T ss_dssp S
T ss_pred C
Confidence 3
No 362
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=44.23 E-value=47 Score=30.78 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
++.|-.+|+.++.....|..++..+.+..+..+.....|.+.|.+|.
T Consensus 1 le~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 1 MASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777766666666666666666666664
No 363
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=44.11 E-value=1.2e+02 Score=24.07 Aligned_cols=48 Identities=8% Similarity=0.123 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 272 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 272 RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
.-+..+..|+.++..++.+......+...|-.-...|..|....+.-|
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888888888888887777655
No 364
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=43.23 E-value=40 Score=26.23 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCchhcchhhcCC
Q 019071 314 SIKEDLSRLCGPEAVANLEQSNP 336 (346)
Q Consensus 314 ~Lr~~L~~L~g~~~~s~L~~~~~ 336 (346)
.|.-+|++|+..+....+..+++
T Consensus 44 sLQvqLE~IRqadt~~qvr~Il~ 66 (79)
T 1tu3_F 44 TLQVQLERIRQADSLERIRAILN 66 (79)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHc
Confidence 45555666655554444444433
No 365
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=43.20 E-value=1.3e+02 Score=24.21 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 264 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 264 ESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
++-+-||.-=-...++|+.-+..|+.+|..-...|..|+..++.
T Consensus 14 e~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 14 ESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344554444444667777777777777666666666555443
No 366
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=43.15 E-value=38 Score=29.31 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
..||.++..|+.....+..+|..|+.+++.|+.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666666666666666666655555555543
No 367
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=42.49 E-value=40 Score=30.23 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el 298 (346)
-..+.+|+++.+.|+.||+.|.++-
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677777777777777776653
No 368
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.38 E-value=25 Score=34.96 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 296 DELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 296 ~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.++..+++++..|+.+...++++|+.|+.
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 100 (437)
T 4b4t_L 72 DQLKQRRQNIRDLEKLYDKTENDIKALQS 100 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444444444444555555555543
No 369
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=42.08 E-value=73 Score=33.14 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 281 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 281 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+..+..|+.+...++.+++.++.+.+.|+.....++.+|.+
T Consensus 351 ~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~ 391 (695)
T 2j69_A 351 ARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIIN 391 (695)
T ss_dssp HHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 370
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=41.71 E-value=1.2e+02 Score=26.27 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENR 292 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~ 292 (346)
+|..|+-+...+..|..
T Consensus 44 elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 44 QLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555444444443
No 371
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.59 E-value=42 Score=22.80 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019071 289 NENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 289 ~EN~~L~~el~~L~~e~~~L 308 (346)
.+...|..++..|+++.++|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 372
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=41.58 E-value=1.6e+02 Score=24.97 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=40.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQ---------------AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk---------------~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
.|.++.+-||.-.-.-|..-. ...++..+++..++.+......++..+...|..|..++..+-..
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667666555544322 22345555666666666666666666666666666666666666
Q ss_pred HHHhc
Q 019071 319 LSRLC 323 (346)
Q Consensus 319 L~~L~ 323 (346)
|..|.
T Consensus 117 lKsLE 121 (147)
T 2b9c_A 117 LKSLE 121 (147)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 65554
No 373
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.36 E-value=27 Score=34.77 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 289 NENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 289 ~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
.+...++.++..|+++...++.|+..|+
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 72 DQLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444455555555555555554
No 374
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.32 E-value=29 Score=29.67 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 019071 302 SEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 302 ~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.+...++..|..|+.+|..-.
T Consensus 95 r~~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 95 RMEKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp THHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665543
No 375
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=41.29 E-value=69 Score=27.95 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 019071 307 KLTSENNSI 315 (346)
Q Consensus 307 ~L~~EN~~L 315 (346)
.|...|+++
T Consensus 40 nLv~RN~~~ 48 (155)
T 2aze_A 40 NLVQRNRHA 48 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 376
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=40.70 E-value=46 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
.|+.+++.|+.+-..|-..+..+++.+..|.
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444433
No 377
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.69 E-value=40 Score=25.52 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHh
Q 019071 309 TSENNSIKEDLSRL 322 (346)
Q Consensus 309 ~~EN~~Lr~~L~~L 322 (346)
..|+.+|+.+|.++
T Consensus 38 d~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 38 EEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 378
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=40.40 E-value=5.9 Score=32.04 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 286 TLSNENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 286 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
.+..|.-.|+++|..|..+++.++.||..||+
T Consensus 40 ~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke 71 (95)
T 3n7n_E 40 KVVDETLFLQRQIAQLNKQLQLSFQENEKLLS 71 (95)
T ss_dssp --------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777764
No 379
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=40.32 E-value=60 Score=24.59 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=26.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETL 287 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~L 287 (346)
|+.+|+....++.|+.|.|=...+++|..-|-..
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~ 38 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 38 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 4566677777888888888888888888777654
No 380
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=40.20 E-value=93 Score=25.13 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 312 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 312 (346)
+.++-.+|..++..-+.+...-+..+..|++.++.|+.|.
T Consensus 55 ~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 55 LLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666666666666666666666655555555543
No 381
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.88 E-value=38 Score=23.55 Aligned_cols=16 Identities=13% Similarity=0.382 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 287 LSNENRNLRDELQRLS 302 (346)
Q Consensus 287 Le~EN~~L~~el~~L~ 302 (346)
|......|.++|..|.
T Consensus 14 l~~r~e~LE~Ri~~LE 29 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLE 29 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3333344444443333
No 382
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=39.78 E-value=1.5e+02 Score=24.15 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
--+++...++++..-..|-.++..++..|-.++--|+.|..+|+.-+.
T Consensus 60 h~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 60 HSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 446677777777777777777888888888888888888888875543
No 383
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=39.72 E-value=1.1e+02 Score=25.88 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
++.|.+|..++..|+.|.-.|..++..-.-++..|......|+..
T Consensus 64 ~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gK 108 (133)
T 1j1d_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcc
Confidence 355666666666777776667776666666677777666666543
No 384
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=39.68 E-value=54 Score=25.67 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+++.+|...|+.|+.|-.-.-.+|..+.--|+....++..|..+|..
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ 54 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIG 54 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 45666777777777777666666666655555554444444445444
No 385
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=39.63 E-value=1.3e+02 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 019071 301 LSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 301 L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+..++...+.+...|+.++..+.
T Consensus 72 ~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 72 YSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666665554
No 386
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=39.49 E-value=6.1 Score=30.01 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNEN---------------------RNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 277 leeLE~rv~~Le~EN---------------------~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+..||.++.+|+.|. +.|+.++..|+=+++.|+..|.+|+.+|.
T Consensus 15 lqalekelaqlekelqawncicdiencsnmaplysdqalkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 15 LQALEKELAQLEKELQAWNCICDIENCSNMAPLYSDQALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp THHHHTTHHHHHHHHTTTCSSCCCCCCCSSCCCCCSTTTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 445666666676665 34788888888888888888888887764
No 387
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=39.41 E-value=66 Score=28.67 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+.|.+|..++..|+.|--.|..++..-.- |...|+.++..|+|
T Consensus 65 e~ckELh~~I~~LEeEKYDlE~kvkkqdy-------EI~dL~~rV~DLrG 107 (180)
T 1j1e_C 65 DLARQLHARVDKVDEERYDIEAKVTKNIT-------EIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcch-------hHHHHHHHHHHHHh
Confidence 33444444444444444444444444433 44455555555544
No 388
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=39.23 E-value=27 Score=28.17 Aligned_cols=16 Identities=25% Similarity=0.354 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLT 309 (346)
Q Consensus 294 L~~el~~L~~e~~~L~ 309 (346)
|+.+++.|.++++.|.
T Consensus 61 L~Rk~DKl~~ele~l~ 76 (94)
T 3vlc_E 61 NNRKLDSLDKEINNLK 76 (94)
T ss_dssp HHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 389
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=39.13 E-value=50 Score=29.35 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 269 SRLRKQAECEELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 269 SR~RKk~~leeLE~rv~~Le~EN~~L~~el 298 (346)
+-.+.+.+++.||.++...+.++..+..++
T Consensus 136 tV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554444444
No 390
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=38.89 E-value=80 Score=27.90 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
++|......|+.+...|.++...|..++..|+.+...+.+.+
T Consensus 52 ~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 52 EIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666666555554433
No 391
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=38.59 E-value=2.9e+02 Score=28.44 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 019071 264 ESARRSRLRKQ 274 (346)
Q Consensus 264 ESARRSR~RKk 274 (346)
..++..+++.+
T Consensus 501 ~~~~~l~~~~~ 511 (592)
T 1f5n_A 501 ASAKMLHEMQR 511 (592)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 392
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=38.18 E-value=67 Score=27.00 Aligned_cols=7 Identities=29% Similarity=0.482 Sum_probs=2.7
Q ss_pred HHHHhHH
Q 019071 258 RKQSNRE 264 (346)
Q Consensus 258 Rk~~NRE 264 (346)
.++.||.
T Consensus 13 q~L~drL 19 (123)
T 2lf0_A 13 KRLSDRL 19 (123)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334443
No 393
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=38.16 E-value=22 Score=28.81 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 265 SARRSRLRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 265 SARRSR~RKk~~leeLE~rv~~Le---~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
+|-..=..|+..+++|..++..++ ..+.-|+.++...+..+..-+..-..|..+
T Consensus 28 ~AEeaL~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~E 84 (96)
T 3fx0_A 28 QAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEK 84 (96)
T ss_dssp SSTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344456777777777776666 445557777777776666665554444333
No 394
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=37.99 E-value=81 Score=24.52 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCCchhcchhhc
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK-----EDLSRLCGPEAVANLEQS 334 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr-----~~L~~L~g~~~~s~L~~~ 334 (346)
.+.+|..+|..|+.|...-..=-...-+-++.|..+...|| +++..+-....++++.+.
T Consensus 13 ~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqadt~~qvr~Il~e~~l~di~~~ 76 (79)
T 1tu3_F 13 LMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDINQL 76 (79)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHccCccchHhhC
Confidence 34455555555555544332222222333456666666665 467777777777766554
No 395
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=37.95 E-value=49 Score=26.60 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=10.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHH
Q 019071 278 EELQARVE-TLSNENRNLRDELQ 299 (346)
Q Consensus 278 eeLE~rv~-~Le~EN~~L~~el~ 299 (346)
.+|+.+|+ .|...+..|..+++
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 44444444444444
No 396
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.60 E-value=19 Score=35.81 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
|+.++..|+.|+..|..++..|++++..++.+...++
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555666666666666666666655555554443
No 397
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=37.42 E-value=1.3e+02 Score=31.83 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNEN 291 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN 291 (346)
-..+++|++++..|+.+.
T Consensus 400 p~~l~~~~~~~~~~~~~~ 417 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIER 417 (854)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 455666666666555543
No 398
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=36.96 E-value=1.1e+02 Score=24.79 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 297 ELQRLSEECEKLTSEN 312 (346)
Q Consensus 297 el~~L~~e~~~L~~EN 312 (346)
+++.|+.++..|..+.
T Consensus 68 ~v~elqgEI~~Lnq~L 83 (99)
T 3ni0_A 68 RIKELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 399
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=36.93 E-value=20 Score=29.46 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
+||..|+.+++.|+.+.. ++..|+..+..|....++|.
T Consensus 74 eYIk~Lq~~~~~l~~~~~----~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 74 DYIRKLQREQQRAKDLEN----RQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 455556555555544321 23334444444444444443
No 400
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=36.93 E-value=1.3e+02 Score=22.42 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
|..-|=.|+.|..+|+++...++.-++.-...+..|..-|.++.
T Consensus 5 LVDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~ 48 (61)
T 3l4f_A 5 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666666655666666655555543
No 401
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=36.50 E-value=1.3e+02 Score=24.21 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 019071 303 EECEKLTSENNSIK 316 (346)
Q Consensus 303 ~e~~~L~~EN~~Lr 316 (346)
+++.+|..|...|.
T Consensus 56 Rk~DKl~~ele~l~ 69 (93)
T 3sjb_C 56 RKLDSLDKEINNLK 69 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 402
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=36.30 E-value=38 Score=25.77 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
.+|..+|..|+....-.. ++..|+.+--.|+.|...|...
T Consensus 27 ~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 27 NQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444322222 4555555555555555544443
No 403
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=36.20 E-value=1.3e+02 Score=22.12 Aligned_cols=43 Identities=33% Similarity=0.291 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 252 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 298 (346)
Q Consensus 252 e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el 298 (346)
|.||-|-+..-|.+-.++|.-=+-+.+-...+. .||..|+--+
T Consensus 3 e~kryknr~asrk~rakfkn~lqh~r~vaaaks----~en~rlr~l~ 45 (63)
T 2c9l_Y 3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAKS----SENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccchHHHHHH
Confidence 567888888888888888888777777766643 4666665443
No 404
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=36.04 E-value=88 Score=26.09 Aligned_cols=41 Identities=10% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
+.|+++++.|+.....|...+..+++++..+....++|...
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777666666665543
No 405
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.60 E-value=84 Score=24.12 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 019071 305 CEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 305 ~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
+..-..++..|+.+|..+.+.
T Consensus 42 i~~aV~~Ll~LKa~l~~~tg~ 62 (79)
T 2djv_A 42 VAAEVAKLLDLKKQLAVAEGK 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHhcCC
Confidence 334445566777777777664
No 406
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=35.20 E-value=3.2e+02 Score=28.09 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
.++..++.-|..|+.....+..+.+.+....+.++.|...|
T Consensus 363 NEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~ 403 (602)
T 1cii_A 363 NKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENI 403 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 407
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=34.63 E-value=41 Score=31.25 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 247 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 295 (346)
Q Consensus 247 ~~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~ 295 (346)
...-+++.+.+.+++-+..+.-+..-|++++.+|+.++..|+.+...|.
T Consensus 263 y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (321)
T 3p7i_A 263 LVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALS 311 (321)
T ss_dssp GHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444445555566666666666555444433
No 408
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.28 E-value=1.9e+02 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019071 302 SEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 302 ~~e~~~L~~EN~~Lr~~L~ 320 (346)
+..+..|+.+...+|.++.
T Consensus 81 q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3334444444444444443
No 409
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=34.20 E-value=94 Score=25.09 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 283 RVETLSNENRNLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 283 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
++..|+.|...|..+-..|-+.+..+....+.|.
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444443
No 410
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=34.00 E-value=22 Score=26.18 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSNENRNL 294 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L 294 (346)
+..+++.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888877665554
No 411
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=33.77 E-value=1.6e+02 Score=26.37 Aligned_cols=53 Identities=13% Similarity=-0.029 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 329 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s 329 (346)
..-|+.+.+.|..|-..|..++..+++++..+..+-...-.......|...+.
T Consensus 33 ~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~ 85 (217)
T 3aon_A 33 HKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFID 85 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 45567777777777777777777777777777766666665555555544343
No 412
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=33.36 E-value=12 Score=25.12 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDEL 298 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el 298 (346)
|..++..|+.++..+..++
T Consensus 9 vKkKiq~lq~q~d~aee~~ 27 (37)
T 3azd_A 9 VRRKIRSLQEQNYHLENEV 27 (37)
T ss_dssp HHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 413
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=33.03 E-value=2.3e+02 Score=24.44 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 292 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 292 ~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..|+..+...+.....+..+...|+.++..|.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~Le 100 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLT 100 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 44444555555555555555556666555555
No 414
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=32.93 E-value=1.4e+02 Score=21.77 Aligned_cols=43 Identities=14% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+-.|..+|..|+.||..|..-++.=+..-..|+.=...+-..+
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 415
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=32.66 E-value=75 Score=21.42 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019071 282 ARVETLSNENRNLRDELQ 299 (346)
Q Consensus 282 ~rv~~Le~EN~~L~~el~ 299 (346)
.+|..|+.+|..|..++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666665555543
No 416
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.44 E-value=1.7e+02 Score=22.55 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+..|..+...|..+......++..|......|..+...|.++|.
T Consensus 44 ~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 44 NVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555666666666666666666666666666654
No 417
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=32.31 E-value=26 Score=33.48 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL 287 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~L 287 (346)
+...|...++...+++.||.|.|=..++.+|..-|-.-
T Consensus 5 ~~~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~ 42 (387)
T 4f3l_B 5 EHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 42 (387)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cccchhhhhcccccchhhcchHHHHHHHHHHHHhcCCC
Confidence 34445555666777889999999999999999877754
No 418
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=32.24 E-value=19 Score=25.35 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 297 ELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 297 el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
+|+.+.+..+.++.++..|+.++.
T Consensus 7 ELeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 7 ELEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444555555555555544
No 419
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=32.11 E-value=29 Score=29.50 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=5.6
Q ss_pred CCCCCCcccC
Q 019071 192 SVPGKPVVSM 201 (346)
Q Consensus 192 ~~~g~~~~~~ 201 (346)
.+.|.||.|.
T Consensus 33 ~v~GrpV~Pa 42 (140)
T 3iyn_Q 33 SIDGRPVLPA 42 (140)
T ss_dssp CTTCSSCCCT
T ss_pred CCCCCccCCC
Confidence 4666666443
No 420
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=32.10 E-value=51 Score=26.52 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 284 VETLSNENRNLRDELQ 299 (346)
Q Consensus 284 v~~Le~EN~~L~~el~ 299 (346)
+..|+.+...|+.++.
T Consensus 6 l~~l~~~~~~l~~~l~ 21 (149)
T 1rtm_1 6 LANMEAEINTLKSKLE 21 (149)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 421
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.82 E-value=90 Score=26.01 Aligned_cols=8 Identities=38% Similarity=0.376 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 019071 250 ERELKRQK 257 (346)
Q Consensus 250 E~e~KR~R 257 (346)
+.++.+.+
T Consensus 57 ~~dl~~l~ 64 (148)
T 3gpv_A 57 EEALKYLE 64 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333433
No 422
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=31.63 E-value=1.6e+02 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLS 288 (346)
Q Consensus 274 k~~leeLE~rv~~Le 288 (346)
+.++.+|+.++..|+
T Consensus 53 ~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 53 EEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555444
No 423
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=31.51 E-value=87 Score=20.17 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 306 EKLTSENNSIKEDLSR 321 (346)
Q Consensus 306 ~~L~~EN~~Lr~~L~~ 321 (346)
+.|+..|-.-++++..
T Consensus 11 qalkarnyaakqkvqa 26 (33)
T 1fmh_B 11 QALKARNYAAKQKVQA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3334444444443333
No 424
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=31.49 E-value=2.6e+02 Score=24.82 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 290 ENRNLRDELQRLSEECEKLTSENNSIKE 317 (346)
Q Consensus 290 EN~~L~~el~~L~~e~~~L~~EN~~Lr~ 317 (346)
+......++..++..+..+..|...++.
T Consensus 131 ~~~~~~~~l~KaK~~Y~~~~~e~e~a~~ 158 (305)
T 2efl_A 131 HIETCWKQLESSKRRFERDCKEADRAQQ 158 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 425
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=30.92 E-value=1.1e+02 Score=22.95 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 295 RDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 295 ~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
......++.....+..-+..+...|...
T Consensus 54 ~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 81 (98)
T 3gwk_C 54 EAQFNELSPKITEFAQLLEDINQQLLKV 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555444
No 426
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=30.42 E-value=2.1e+02 Score=25.45 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
+.|..++..+..++.+|+.++..+-++..
T Consensus 41 d~L~~ef~~i~~~~~~~r~~~~~~~~~a~ 69 (217)
T 3aon_A 41 DELMRQFILLIRKNNELRQAIEKETQTAM 69 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777655433
No 427
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=30.40 E-value=29 Score=25.87 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Q 019071 262 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS----EECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 262 NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~----~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.|.+|-+.|+.- +..-|.++..++.|......+++..+ -+.+.|+.|-..++.+|...+
T Consensus 9 qrlaaiktrlqa---lggseaelaafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 9 QRLAAIKTRLQA---LGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHH---CSSGGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 455555555432 22233444455555555555444332 245667777777777777654
No 428
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=30.37 E-value=1.5e+02 Score=29.21 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 019071 273 KQAECEELQARVETLSN------ENRNLRDELQRLS 302 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~------EN~~L~~el~~L~ 302 (346)
...+++.|+.++..+.. |.+.|..++..|+
T Consensus 205 ~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 205 RARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLS 240 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 34455555555555555 5555555555543
No 429
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=30.33 E-value=3.3e+02 Score=25.13 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L 301 (346)
.+.+....++..+|...-.+...++.++..+
T Consensus 347 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~ 377 (446)
T 3pik_A 347 VNYEQKIQNAFKEVADALALRQSLNDQISAQ 377 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433
No 430
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=30.23 E-value=66 Score=30.86 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019071 296 DELQRL 301 (346)
Q Consensus 296 ~el~~L 301 (346)
++|..|
T Consensus 42 ~KI~~L 47 (323)
T 1lwu_B 42 AKMQRM 47 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 431
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=29.91 E-value=84 Score=33.86 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=18.1
Q ss_pred CchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCcccc
Q 019071 29 ADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWG 64 (346)
Q Consensus 29 pdW~~smQAYy~~~~~pp~y~~s~va~~~phPYmWg 64 (346)
.||.=|=|-|.|- +.|-||... ..+.|+|-
T Consensus 398 ~DW~ISRqr~WG~--pIP~w~~~~----~~~i~v~~ 427 (862)
T 1gax_A 398 KDWNISRQLWWGH--QIPAWYCED----CQAVNVPR 427 (862)
T ss_dssp CCCCCBCCCSSSC--CCCCEEETT----TCCEECCC
T ss_pred cceeEecccCCCc--ccCceecCC----CCEEEEec
Confidence 6887555988874 446666541 12456664
No 432
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=29.69 E-value=2e+02 Score=22.44 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
-++.|+.-++.|..-..+-+.+....+.+.+.-......+++.|..
T Consensus 25 ~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666655555555555555555554
No 433
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=29.59 E-value=1.5e+02 Score=20.84 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
++...|-+||.+|+.-......+++.+-.+++.+
T Consensus 7 eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~ 40 (45)
T 4gif_A 7 EEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKML 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556555555555555555554444433
No 434
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=29.48 E-value=1.1e+02 Score=27.14 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 294 LRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 294 L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+.++..++.+++.++.+...++..|..
T Consensus 103 a~~~~~~a~a~l~~a~a~l~~a~~~l~~ 130 (277)
T 2f1m_A 103 ALADAQQANAAVTAAKAAVETARINLAY 130 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444445555555555555543
No 435
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=29.43 E-value=1.4e+02 Score=23.40 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 295 RDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 295 ~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
..+|-.+-+++...-.+...++.+|..+.
T Consensus 49 w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 49 YENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666777776665
No 436
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=29.21 E-value=72 Score=27.79 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNL---RDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L---~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
++.++.|+.++..++.+...| .-+...++...++|+.|..++++.+.+
T Consensus 75 ~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 75 KSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
No 437
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=29.19 E-value=65 Score=28.66 Aligned_cols=27 Identities=7% Similarity=0.024 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
|+..+..+......++.+|..|++++.
T Consensus 41 ~~~h~~~~~~~i~~~~~~i~~~~~~l~ 67 (228)
T 1flk_A 41 LESQLSRHDQMLSVHDIRLADMDLRFQ 67 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444444444444444433
No 438
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=29.15 E-value=2.1e+02 Score=25.16 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019071 280 LQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 280 LE~rv~~Le~EN~~L~~el~~L 301 (346)
|+.--+.++.-|..|+.++..|
T Consensus 188 l~~ak~~ye~ln~~L~~eLp~l 209 (251)
T 2fic_A 188 LIKAQKVFEEMNVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445566666666665
No 439
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=29.01 E-value=1.6e+02 Score=28.72 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019071 303 EECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 303 ~e~~~L~~EN~~Lr~~L~~L 322 (346)
+++.....++.+|..++..|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~l 245 (373)
T 3hhm_B 226 EDLKKQAAEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 33333333344444444433
No 440
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=28.95 E-value=2.6e+02 Score=23.47 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
+++..++.++..|..+...|..+-+.+...+..-...+..|-++|....+
T Consensus 50 ~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td 99 (123)
T 4aj5_K 50 KELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTD 99 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555666666666666555555555566666666666666666554
No 441
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=28.79 E-value=62 Score=27.20 Aligned_cols=45 Identities=22% Similarity=0.405 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLR-----DELQRLSEECEKLTSENNSIKED 318 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~-----~el~~L~~e~~~L~~EN~~Lr~~ 318 (346)
++++..|..+++.++.....+. ..+.++.+|++.|..+..+|+..
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655544432 23455555566666666665544
No 442
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=28.68 E-value=1.1e+02 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRD 296 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~ 296 (346)
++..+.|+++++.|..+...|.+
T Consensus 137 ~~~~~~l~~~i~~L~~~l~~le~ 159 (166)
T 3pjs_K 137 KAAEEAYTRTTRALHERFDRLER 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 443
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=28.49 E-value=2e+02 Score=21.97 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
++++++|..=-+.-+.|-.-|..++...++....|
T Consensus 32 keR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L 66 (70)
T 3brv_B 32 RERCEELLHFQASQREEKEFLMCKFQEARKLVERL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444333333333333444444444333333
No 444
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.32 E-value=1.6e+02 Score=24.38 Aligned_cols=9 Identities=11% Similarity=-0.130 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 019071 249 DERELKRQK 257 (346)
Q Consensus 249 DE~e~KR~R 257 (346)
|-..++..+
T Consensus 59 dl~~l~~I~ 67 (148)
T 3gpv_A 59 ALKYLEMIL 67 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 445
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=28.22 E-value=2e+02 Score=25.77 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 270 RLRKQAECEELQARVETLSNENRNLRDELQ 299 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~EN~~L~~el~ 299 (346)
+.+|.+-++.|..++..|+.+-..|..++.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888887777766654
No 446
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.18 E-value=2.3e+02 Score=24.84 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+.|..++..|..-...|...+......+..|..+...|+-+|..|+
T Consensus 98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 98 SERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44555666666666666666666666666666666666666665554
No 447
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=28.13 E-value=2.4e+02 Score=25.06 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 019071 308 LTSENNSIKEDLS 320 (346)
Q Consensus 308 L~~EN~~Lr~~L~ 320 (346)
|+.+.+.|+++|.
T Consensus 237 LrEQlk~IqkELG 249 (252)
T 3ljc_A 237 LNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 4444555555554
No 448
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.10 E-value=80 Score=32.35 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 019071 275 AECEELQARVETL 287 (346)
Q Consensus 275 ~~leeLE~rv~~L 287 (346)
.+|..++.+....
T Consensus 342 ~~~~~~~~~~~~~ 354 (575)
T 2i1j_A 342 DRLRQMQEEMERS 354 (575)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 449
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=28.06 E-value=1.8e+02 Score=26.08 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 325 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~ 325 (346)
.-|+.+.+.|..|-..|..++..+++++..+..+-...-.......|.
T Consensus 26 ~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~ 73 (223)
T 3a5c_G 26 DLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGP 73 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Confidence 345555555555555555555555555555444443333333333343
No 450
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=28.04 E-value=1.6e+02 Score=26.00 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019071 279 ELQARVETLSNENRNLRDELQRL 301 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L 301 (346)
-|+.+++.|+++...|+..+..|
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l 105 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTI 105 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 451
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.83 E-value=1.6e+02 Score=20.66 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 276 ECEELQARVETLSNENRNLRDELQR 300 (346)
Q Consensus 276 ~leeLE~rv~~Le~EN~~L~~el~~ 300 (346)
.++.||..++.|+..-..|..++..
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~s 30 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444443
No 452
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=27.57 E-value=2.5e+02 Score=22.80 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.|.+|..++..|+.|--.|..++..- .-|...|+.++.+|
T Consensus 49 e~~keLh~~I~~LEeEKYDlE~kv~kq-------~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 49 EKAKELWQTIYNLEAEKFDLQEKFKQQ-------KYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhh-------hHHHHHHHHHHHHh
Confidence 344455555555555555554444444 44444555555444
No 453
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=27.40 E-value=1.2e+02 Score=23.90 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 293 NLRDELQRLSEECEKLTSENNSIK 316 (346)
Q Consensus 293 ~L~~el~~L~~e~~~L~~EN~~Lr 316 (346)
.|..+|...+.++..|+.+...|+
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555554
No 454
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=27.36 E-value=1.9e+02 Score=22.39 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 284 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 284 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.+|+..--...++|..|..++...+.++..+...|...
T Consensus 32 ~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 32 LQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 455
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=27.34 E-value=2.1e+02 Score=25.47 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
+.|+..+.+|...|..|.++--.|+.....-.-+|..|.
T Consensus 61 ~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~ 99 (180)
T 1j1e_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLT 99 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHH
Confidence 345555555666665555555555555544444555554
No 456
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=27.33 E-value=1.8e+02 Score=29.01 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 283 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 283 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
++..|+..+.....+|..|+..+.........|+..+..|..
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666666666666777776666653
No 457
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.28 E-value=1.5e+02 Score=20.28 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNE 290 (346)
Q Consensus 275 ~~leeLE~rv~~Le~E 290 (346)
.|+.+||.+-..|+.-
T Consensus 10 nyiqeleernaelknl 25 (46)
T 3he4_B 10 NYIQELEERNAELKNL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhH
Confidence 3455555554444433
No 458
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=27.11 E-value=2.1e+02 Score=24.20 Aligned_cols=21 Identities=5% Similarity=0.148 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019071 302 SEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 302 ~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+++...++.....|..+|...
T Consensus 52 k~~q~~~e~rI~~L~~~L~~A 72 (158)
T 2p4v_A 52 KKRLREIDRRVRYLTKCMENL 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 444455555556666555543
No 459
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=27.09 E-value=3.3e+02 Score=24.20 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 019071 297 ELQRLSEECEKL 308 (346)
Q Consensus 297 el~~L~~e~~~L 308 (346)
++...+..++.+
T Consensus 131 ~l~KaKk~Y~~~ 142 (301)
T 2efk_A 131 QLENSKRKFERD 142 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 460
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.05 E-value=3.5e+02 Score=27.51 Aligned_cols=19 Identities=0% Similarity=0.039 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHhHHH
Q 019071 247 IQDERELKRQKRKQSNRES 265 (346)
Q Consensus 247 ~~DE~e~KR~RRk~~NRES 265 (346)
+.-|+..+....+++|+..
T Consensus 57 ~kqerdv~~rI~kLkn~L~ 75 (491)
T 1m1j_A 57 DDTDQNYSQRIDNIRQQLA 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 3456777777778887764
No 461
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=26.81 E-value=72 Score=25.62 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNL 294 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L 294 (346)
|..|+.++..|+.+...|
T Consensus 6 l~~l~~~~~~l~~~l~~l 23 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELT 23 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 462
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=26.79 E-value=72 Score=26.94 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 019071 278 EELQARVETL 287 (346)
Q Consensus 278 eeLE~rv~~L 287 (346)
++|..+++.|
T Consensus 148 ~~L~~~l~~l 157 (166)
T 3pjs_K 148 RALHERFDRL 157 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 463
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.40 E-value=90 Score=20.16 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019071 287 LSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 287 Le~EN~~L~~el~~L~~e~~ 306 (346)
|+.+...|..-++.|++...
T Consensus 4 lee~~r~l~~ivq~lq~r~d 23 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLD 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 464
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=26.39 E-value=80 Score=28.02 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcch
Q 019071 296 DELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 331 (346)
Q Consensus 296 ~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L 331 (346)
+++..++++++.|+.+...++.++..|.|...+..|
T Consensus 15 ~q~~q~~~Ql~~~k~Ql~q~k~qy~sltG~r~~~~~ 50 (213)
T 1r8i_A 15 EQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDL 50 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHH
Confidence 445556666666777777777777778776655544
No 465
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=26.34 E-value=1.5e+02 Score=22.81 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 274 QAECEELQARVETLSNE-------NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 274 k~~leeLE~rv~~Le~E-------N~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+..|++|+..|..|... -........++......|..-+..|...|...
T Consensus 31 ~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a 86 (103)
T 4i0x_B 31 TENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTA 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555 12223333334444444444444444444443
No 466
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=26.15 E-value=3.4e+02 Score=23.96 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEEC 305 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~ 305 (346)
.+|+.+++.++.....+..++..|..++
T Consensus 82 l~l~~~Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 82 EENFEDLHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 467
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=26.03 E-value=1.5e+02 Score=24.71 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 319 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L 319 (346)
+-.++|+++++.|+.....-.+.+..|+..+..-..|..+|.-.+
T Consensus 22 qvsedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDI 66 (119)
T 1lwu_A 22 EVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDI 66 (119)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 468
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=25.99 E-value=63 Score=27.44 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
..+...+..|-.+++.|.++.++|..++.+|+++...+
T Consensus 94 ~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~ 131 (140)
T 3iyn_Q 94 SARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 469
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=25.95 E-value=2e+02 Score=24.18 Aligned_cols=48 Identities=13% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
|-.+..||.+|+.+-..+-.+..++.+|++-+-.|.+....|...-..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~ 60 (125)
T 4g2k_A 13 QGNMKQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAK 60 (125)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.53 E-value=1.7e+02 Score=22.49 Aligned_cols=34 Identities=9% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
+..||..+..+..|...++..|..|+.+++.|+.
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHHh
No 471
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=25.32 E-value=3e+02 Score=23.45 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHH--HHHHHHHHHHHHHHHHHHh
Q 019071 275 AECEELQARVETLSNENRNLRDELQR---------------------------LSE--ECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~---------------------------L~~--e~~~L~~EN~~Lr~~L~~L 322 (346)
.+-.+|..+|.....+-.+|-.+|.. +.+ .|+.|...+..|+..|...
T Consensus 59 ~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~Y 135 (140)
T 1xaw_A 59 QEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDY 135 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
No 472
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=25.24 E-value=1.1e+02 Score=27.92 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 243 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQ 299 (346)
Q Consensus 243 ~~~~~~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~ 299 (346)
.+.....-+++...+.+++-+.-+.-+..-|++++.+|++++..|+.....|.....
T Consensus 250 ~~~~y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (310)
T 3n5l_A 250 DDDQLLPIRQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMAEREQKTA 306 (310)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 473
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=25.03 E-value=1.1e+02 Score=22.59 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
++|+.-...+......|...+..|+..+..|
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=25.03 E-value=1e+02 Score=26.03 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEEC-------EKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~-------~~L~~EN~~Lr~~L~~L~ 323 (346)
+...+++|..+|..|+.+...|..++..+.... +.|.......+++|...+
T Consensus 59 eLe~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtq 116 (125)
T 2pms_C 59 KLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTE 116 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
No 475
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=25.00 E-value=2e+02 Score=20.97 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
..|=.-|=.|+.+.++|++++..|++-++.-..--..|..-+.++
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.84 E-value=80 Score=23.77 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHh
Q 019071 279 ELQARVETLSNENRNLRDELQRLSEE-----CEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 279 eLE~rv~~Le~EN~~L~~el~~L~~e-----~~~L~~EN~~Lr~~L~~L 322 (346)
.+-.+...|..|...|+.++.....+ +.+|+.....|.++|+.+
T Consensus 3 k~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l 51 (65)
T 3sja_C 3 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNL 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=24.82 E-value=1.5e+02 Score=19.39 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKL 308 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 308 (346)
+..|.++|..|+.+---|.-++..|+++...|
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 478
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=24.79 E-value=2.2e+02 Score=25.44 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 270 RLRKQAECEELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 270 R~RKk~~leeLE~rv~~Le~----EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
|.+|+--.+....+++.|+. +...|...-..|...-+....=|..|+++|-.|
T Consensus 134 R~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l 190 (237)
T 4avm_A 134 RGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPIL 190 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=24.73 E-value=1.2e+02 Score=26.15 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 285 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 285 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.|+.-+..|+..+..|.+++..|+.+-..|+.+|.+.
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka 47 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA 47 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.61 E-value=1.9e+02 Score=23.78 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+.+-..+++.|..+...|+.++..+..+...|+.....=++....
T Consensus 1 ~~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~ 45 (112)
T 1x79_B 1 MAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSH 45 (112)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=24.47 E-value=2.9e+02 Score=24.63 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 275 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 275 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
+..++++++...|+.....|..++......+..+..-...|.+.|..+..+.
T Consensus 33 ~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~~ 84 (237)
T 4avm_A 33 ERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
No 482
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=24.39 E-value=1.1 Score=39.75 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhcchhhcCCC
Q 019071 274 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 337 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~ 337 (346)
..+++.|+.+++.|+.+..+|+.++.++..+++.++....+=++++........+.+|...+|+
T Consensus 18 ~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDn 81 (177)
T 3a6m_A 18 GQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDD 81 (177)
T ss_dssp HHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 483
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.26 E-value=1.4e+02 Score=21.86 Aligned_cols=36 Identities=6% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECE 306 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 306 (346)
+-+-+.|+.|+.+.+.|...-...+..-..|+.++.
T Consensus 28 lERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 28 DERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 484
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=24.12 E-value=3.3e+02 Score=24.50 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 326 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g~~ 326 (346)
+-...++++++...|+.+...|...+....+.+..+..--..+.+.|..+..+.
T Consensus 36 ~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly~p~ 89 (243)
T 4a3a_A 36 KDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPD 89 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
No 485
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=24.01 E-value=3.8e+02 Score=23.72 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 247 IQDERELKRQKRKQSNRESARRSRLRKQ------AECEELQARVETL-----SNENRNLRDELQRLSEECEKLTSENNSI 315 (346)
Q Consensus 247 ~~DE~e~KR~RRk~~NRESARRSR~RKk------~~leeLE~rv~~L-----e~EN~~L~~el~~L~~e~~~L~~EN~~L 315 (346)
+.+++-.|..+...++++.=++.|++.. .++..++..++.+ ..+...|...+..+++-+..- +...+
T Consensus 119 Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~--~~~~i 196 (219)
T 4e81_A 119 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE--DKAAI 196 (219)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS--CHHHH
T ss_pred ccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcC--CHHHH
Q ss_pred HHHHHHhc
Q 019071 316 KEDLSRLC 323 (346)
Q Consensus 316 r~~L~~L~ 323 (346)
+.++..|.
T Consensus 197 ~~~~~~L~ 204 (219)
T 4e81_A 197 EAKMQELA 204 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 486
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.85 E-value=2.1e+02 Score=22.51 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L~~---el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
+..+..|+..|+.|...+..+.. ....++++++.|..+...+-..|..
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~ 68 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
No 487
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.82 E-value=1.9e+02 Score=24.08 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 243 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL 287 (346)
Q Consensus 243 ~~~~~~DE~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~L 287 (346)
+.....++...+|.++.+.--+.+.+.|.++-.+.+.|-.+|+.+
T Consensus 81 P~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 81 PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=23.80 E-value=1.5e+02 Score=25.66 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 253 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE------NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 253 ~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~E------N~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
++........=....+-|.+|+-..+....+++.|+.. ...|..--..|....+....-|..|+++|..|
T Consensus 121 l~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l 196 (244)
T 1uru_A 121 LNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPAL 196 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 489
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=23.78 E-value=1.9e+02 Score=29.64 Aligned_cols=83 Identities=7% Similarity=-0.032 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 019071 262 NRESARRSRLRK------QAECEELQARVETLSNENRNLRDELQRLSEECEK---------------------------- 307 (346)
Q Consensus 262 NRESARRSR~RK------k~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~---------------------------- 307 (346)
|.+..+++-.|| -.++.+|..+...|..+.+.|+.+.+.+.+++-+
T Consensus 15 n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (522)
T 3vbb_A 15 DPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADA 94 (522)
T ss_dssp CHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCGGGCSSSSCCHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHhhhhhh
Q ss_pred ---------------HHHHHHHHHHHHHHhcCCchhcchhhcCCC--CCCCcccCC
Q 019071 308 ---------------LTSENNSIKEDLSRLCGPEAVANLEQSNPT--QSCGEEENS 346 (346)
Q Consensus 308 ---------------L~~EN~~Lr~~L~~L~g~~~~s~L~~~~~~--~~~~~~~~~ 346 (346)
|..+...|.+++..+. ..+..+...++. +..+-.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~--~~~~~~l~~iPN~~~~~vP~g~~ 148 (522)
T 3vbb_A 95 LANLKVSQIKKVRLLIDEAILKCDAERIKLE--AERFENLREIGNLLHPSVPISND 148 (522)
T ss_dssp HHTTCSSSHHHHHHHHHHSCCCCHHHHHHHH--HHHHHHGGGSCCCCCTTSCCCSC
T ss_pred hhhhhhHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHhCCCCCCCCCCCCCC
No 490
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=23.73 E-value=1.5e+02 Score=23.98 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 259 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQ 299 (346)
Q Consensus 259 k~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~ 299 (346)
....+...+..|+.++...+.|+++++.|..+...|.++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~le~~~~ 135 (139)
T 3eff_K 95 GREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLD 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=23.65 E-value=3.8e+02 Score=23.60 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 250 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 250 E~e~KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+.+.++.+......+....-+.+...-...++.|...|.....-|..-+..+++++..+...-...+.-|..|
T Consensus 52 ~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~L 124 (233)
T 4efa_E 52 RNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSL 124 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
No 492
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=23.60 E-value=1.6e+02 Score=21.48 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTS 310 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 310 (346)
++|+.-...+......|...+..|...+..|..
T Consensus 9 ~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~ 41 (97)
T 2vs0_A 9 EEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAA 41 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 493
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.57 E-value=1.6e+02 Score=26.74 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 278 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 321 (346)
Q Consensus 278 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~ 321 (346)
.+|+.++..++.+...++.++..++.+++..+.+..+++.....
T Consensus 65 ~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~ 108 (341)
T 3fpp_A 65 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQT 108 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 494
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=23.57 E-value=1.1e+02 Score=23.04 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019071 271 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 324 (346)
Q Consensus 271 ~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L~g 324 (346)
.+-..+-.+|..+|..|+....-.. ++..|+.+--.|+.|...|......-.+
T Consensus 20 ~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~~~~ 72 (76)
T 1zhc_A 20 DKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYREKQK 72 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHHhcc
No 495
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.57 E-value=1.2e+02 Score=26.32 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 277 CEELQARVETLSNENRNLRDELQRLSEECEKLT 309 (346)
Q Consensus 277 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 309 (346)
+..|+.+|+.|+.....-..+|..|++++..|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 496
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=23.47 E-value=4.4e+02 Score=24.29 Aligned_cols=67 Identities=3% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 254 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 320 (346)
Q Consensus 254 KR~RRk~~NRESARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~ 320 (346)
++..+...-+.-.+..+...+....++..+|...-.+...++.++..+++.+...+......+.+..
T Consensus 326 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~ 392 (442)
T 1yc9_A 326 RLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQ 392 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=23.36 E-value=17 Score=32.93 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019071 266 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 307 (346)
Q Consensus 266 ARRSR~RKk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 307 (346)
....++.++++.++.+.+.+.+..+..+|+++++.|+++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 240 AILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcc
No 498
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.32 E-value=2.7e+02 Score=21.71 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-HHHHHHHHHH
Q 019071 274 QAECEELQARVETLSNENRNL----------RDELQRLSEECEK-LTSENNSIKE 317 (346)
Q Consensus 274 k~~leeLE~rv~~Le~EN~~L----------~~el~~L~~e~~~-L~~EN~~Lr~ 317 (346)
+..+++++.-|.+++-|...+ ..+|...+.++.. |+.+...|..
T Consensus 40 e~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 40 EQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 499
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.24 E-value=6.1e+02 Score=25.86 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019071 253 LKRQKRKQSNRESARRSRLRKQAECEE----LQARVETLSNENRNLRDE----LQRLSEECEKLTSENNSIKEDLSRLC 323 (346)
Q Consensus 253 ~KR~RRk~~NRESARRSR~RKk~~lee----LE~rv~~Le~EN~~L~~e----l~~L~~e~~~L~~EN~~Lr~~L~~L~ 323 (346)
.+.+.|.++--+.|+..=+.+.+++.. ++.+.+.++++|...+.. +...+++++....+...-..+|.+..
T Consensus 15 q~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe 93 (497)
T 3iox_A 15 QTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYE 93 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=23.23 E-value=2.6e+02 Score=21.63 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019071 273 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 322 (346)
Q Consensus 273 Kk~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lr~~L~~L 322 (346)
+-+-+..|....-..+.+...|..++...++++..+..+....-.+|..+
T Consensus 28 ~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELnsm 77 (77)
T 3mtu_E 28 RTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLELNNM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcC
Done!