BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019076
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
Length = 346
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 130/314 (41%), Gaps = 24/314 (7%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++HKL+
Sbjct: 21 VGYWLSEKKIKKLNFQAFAELCR------KRGMEVVQLNLSRPIEEQGPLDVIIHKLTDV 74
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 75 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDD 134
Query: 139 KVRVPRQMVITKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEP 198
++ P M +T ++ E SHE+ + +++ L+ ++P
Sbjct: 135 RICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQP 194
Query: 199 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKXXXXXXXXXXXXXXXXXX 258
P ++Q F+NH +L+K++++GE+ VV+R SL N S +
Sbjct: 195 PCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSV 254
Query: 259 XXXLD--PGIAXXXXXXXXXXXXXXXXXXXXXXXFNIDMIREHGMRDVFYVIDINYFPGY 316
LD G+ F ID+I + VIDIN FPGY
Sbjct: 255 LTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIII-NNQTGQHAVIDINAFPGY 313
Query: 317 GKMPDYEHIFTDFL 330
+ ++ FTD L
Sbjct: 314 EGVSEF---FTDLL 324
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
Length = 347
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 130/314 (41%), Gaps = 24/314 (7%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++HKL+
Sbjct: 22 VGYWLSEKKIKKLNFQAFAELCR------KRGMEVVQLNLSRPIEEQGPLDVIIHKLTDV 75
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 76 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDD 135
Query: 139 KVRVPRQMVITKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEP 198
++ P M +T ++ E SHE+ + +++ L+ ++P
Sbjct: 136 RICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQP 195
Query: 199 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKXXXXXXXXXXXXXXXXXX 258
P ++Q F+NH +L+K++++GE+ VV+R SL N S +
Sbjct: 196 PCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSV 255
Query: 259 XXXLD--PGIAXXXXXXXXXXXXXXXXXXXXXXXFNIDMIREHGMRDVFYVIDINYFPGY 316
LD G+ F ID+I + VIDIN FPGY
Sbjct: 256 LTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIII-NNQTGQHAVIDINAFPGY 314
Query: 317 GKMPDYEHIFTDFL 330
+ ++ FTD L
Sbjct: 315 EGVSEF---FTDLL 325
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase
Length = 328
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 127/314 (40%), Gaps = 24/314 (7%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K L R +G V ++ +RP+ +QGP DV++HKL+
Sbjct: 11 VGYWLSEKKIKKLNFQAFAELCR------KRGXEVVQLNLSRPIEEQGPLDVIIHKLTDV 64
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 65 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYXEDD 124
Query: 139 KVRVPRQMVITKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEP 198
++ P +T ++ E SHE + +++ L+ ++P
Sbjct: 125 RICSPPFXELTSLCGDDTXRLLEKNGLTFPFICKTRVAHGTNSHEXAIVFNQEGLNAIQP 184
Query: 199 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKXXXXXXXXXXXXXXXXXX 258
P ++Q F+NH +L+K++++GE+ VV+R SL N S +
Sbjct: 185 PCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSV 244
Query: 259 XXXLD--PGIAXXXXXXXXXXXXXXXXXXXXXXXFNIDMIREHGMRDVFYVIDINYFPGY 316
LD G+ F ID+I + VIDIN FPGY
Sbjct: 245 LTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIII-NNQTGQHAVIDINAFPGY 303
Query: 317 GKMPDYEHIFTDFL 330
+ ++ FTD L
Sbjct: 304 EGVSEF---FTDLL 314
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 177 GSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSK 235
G+ +H++ + ++ + ++ P L Q ++NH + K++ IG T+K R SLPNV +
Sbjct: 147 GTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHR 205
>pdb|3U0O|A Chain A, The Crystal Structure Of Selenophosphate Synthetase From
E. Coli
pdb|3U0O|B Chain B, The Crystal Structure Of Selenophosphate Synthetase From
E. Coli
Length = 347
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 35 LTSKKKKSFLQPKLEILARYILTHTN-KGISFVAIDQNRPLSDQGPFDVVLH 85
LT+ +KKS L+P+ + LA ++ N G SF I+ + ++D F ++ H
Sbjct: 185 LTTAEKKSLLKPEHQGLATEVMCRMNIAGASFANIEGVKAMTDVTGFGLLGH 236
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEA---GXXXXXXXXXXXXDGSAKS 181
L DV+ +NLS K RVP T+ +S P+ VFE G + S++S
Sbjct: 152 LLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRS 211
Query: 182 HELFL 186
H +FL
Sbjct: 212 HSVFL 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,629,304
Number of Sequences: 62578
Number of extensions: 311405
Number of successful extensions: 685
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 10
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)