Query 019076
Match_columns 346
No_of_seqs 204 out of 489
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 4.6E-88 1E-92 643.7 24.6 301 26-332 5-307 (307)
2 PLN02941 inositol-tetrakisphos 100.0 5.9E-80 1.3E-84 594.8 33.4 309 23-337 16-327 (328)
3 COG0189 RimK Glutathione synth 100.0 2.7E-28 5.8E-33 235.7 23.1 229 52-318 52-293 (318)
4 PRK10446 ribosomal protein S6 100.0 7.1E-27 1.5E-31 224.0 24.1 246 53-336 17-292 (300)
5 TIGR02144 LysX_arch Lysine bio 100.0 5.8E-26 1.3E-30 214.4 25.9 243 46-334 13-279 (280)
6 TIGR00768 rimK_fam alpha-L-glu 99.9 7.2E-25 1.6E-29 205.6 23.9 231 46-320 14-262 (277)
7 PF08443 RimK: RimK-like ATP-g 99.9 6.2E-26 1.3E-30 204.0 14.8 168 119-322 2-177 (190)
8 TIGR01380 glut_syn glutathione 99.9 8.2E-22 1.8E-26 190.4 20.1 228 57-332 26-310 (312)
9 KOG1057 Arp2/3 complex-interac 99.9 3.8E-22 8.3E-27 203.6 18.4 263 26-331 38-340 (1018)
10 PRK01372 ddl D-alanine--D-alan 99.9 8.8E-21 1.9E-25 181.4 26.3 230 57-319 31-275 (304)
11 TIGR01205 D_ala_D_alaTIGR D-al 99.9 1.9E-20 4.1E-25 179.8 25.1 242 49-320 18-291 (315)
12 PRK05246 glutathione synthetas 99.9 5.2E-21 1.1E-25 185.0 20.2 235 47-335 23-314 (316)
13 PRK12458 glutathione synthetas 99.9 9.7E-21 2.1E-25 184.9 21.4 215 79-337 79-328 (338)
14 TIGR03103 trio_acet_GNAT GNAT- 99.9 6.4E-20 1.4E-24 189.4 23.7 244 46-330 245-540 (547)
15 PRK14571 D-alanyl-alanine synt 99.9 2.5E-19 5.4E-24 171.6 24.6 227 57-322 27-273 (299)
16 PRK01966 ddl D-alanyl-alanine 99.8 2.8E-18 6.1E-23 167.1 23.6 214 79-321 81-308 (333)
17 PRK14570 D-alanyl-alanine synt 99.8 9.6E-19 2.1E-23 172.4 20.0 217 79-322 87-324 (364)
18 PRK14569 D-alanyl-alanine synt 99.8 2.3E-18 5E-23 165.0 22.2 227 59-322 32-273 (296)
19 PRK14016 cyanophycin synthetas 99.8 1.2E-18 2.6E-23 185.3 19.8 193 109-318 203-451 (727)
20 PRK02471 bifunctional glutamat 99.8 5.5E-18 1.2E-22 180.3 24.4 230 54-317 437-729 (752)
21 PRK14572 D-alanyl-alanine synt 99.8 8.9E-18 1.9E-22 164.5 22.9 215 79-322 88-323 (347)
22 PRK14568 vanB D-alanine--D-lac 99.8 1E-17 2.2E-22 163.8 22.4 212 79-322 90-318 (343)
23 TIGR02068 cya_phycin_syn cyano 99.8 3.3E-18 7.2E-23 185.0 16.2 194 109-319 202-451 (864)
24 PF07478 Dala_Dala_lig_C: D-al 99.8 1.4E-18 2.9E-23 158.3 9.7 165 138-324 5-185 (203)
25 TIGR02291 rimK_rel_E_lig alpha 99.7 1.1E-16 2.3E-21 154.4 19.4 194 109-317 26-273 (317)
26 TIGR01435 glu_cys_lig_rel glut 99.7 5.6E-16 1.2E-20 163.4 21.2 195 106-317 461-715 (737)
27 PRK14573 bifunctional D-alanyl 99.7 3.2E-15 7E-20 161.2 25.0 240 59-322 480-764 (809)
28 TIGR01142 purT phosphoribosylg 99.7 1.4E-14 3.1E-19 142.7 21.5 221 60-321 20-279 (380)
29 TIGR01161 purK phosphoribosyla 99.6 5.1E-14 1.1E-18 137.9 23.3 178 105-318 83-269 (352)
30 COG1181 DdlA D-alanine-D-alani 99.6 5.2E-14 1.1E-18 136.2 22.6 240 60-323 32-295 (317)
31 PRK06019 phosphoribosylaminoim 99.6 3.8E-14 8.3E-19 140.0 20.9 184 98-319 80-272 (372)
32 PF13535 ATP-grasp_4: ATP-gras 99.6 6E-15 1.3E-19 129.6 12.9 163 117-315 1-180 (184)
33 PRK12767 carbamoyl phosphate s 99.6 7.3E-14 1.6E-18 134.7 20.9 166 107-315 98-271 (326)
34 PRK07206 hypothetical protein; 99.6 3E-13 6.5E-18 135.0 21.4 187 98-321 86-295 (416)
35 PRK06849 hypothetical protein; 99.6 1.1E-12 2.5E-17 130.0 24.2 167 107-315 103-277 (389)
36 PRK09288 purT phosphoribosylgl 99.5 6.2E-13 1.3E-17 131.7 20.3 231 46-322 25-293 (395)
37 PLN02948 phosphoribosylaminoim 99.5 1.4E-12 3.1E-17 135.7 23.5 244 26-319 20-295 (577)
38 PRK05294 carB carbamoyl phosph 99.5 5E-13 1.1E-17 148.0 21.1 218 60-315 586-842 (1066)
39 TIGR01369 CPSaseII_lrg carbamo 99.5 2.2E-12 4.7E-17 142.7 24.4 217 60-315 586-842 (1050)
40 PRK08462 biotin carboxylase; V 99.5 2.9E-12 6.2E-17 129.4 20.5 176 104-317 100-298 (445)
41 PRK02186 argininosuccinate lya 99.5 3.3E-12 7.2E-17 139.2 22.1 178 100-316 88-279 (887)
42 PRK13790 phosphoribosylamine-- 99.5 3.2E-12 6.9E-17 126.8 19.7 212 46-316 17-252 (379)
43 PLN02735 carbamoyl-phosphate s 99.4 6.2E-12 1.4E-16 139.3 21.4 225 60-320 55-325 (1102)
44 PRK05586 biotin carboxylase; V 99.4 4.6E-12 1E-16 128.1 17.2 179 104-317 98-296 (447)
45 PRK08654 pyruvate carboxylase 99.4 1.8E-11 3.8E-16 125.6 21.4 176 104-317 98-295 (499)
46 PRK12833 acetyl-CoA carboxylas 99.4 6E-12 1.3E-16 128.1 16.6 178 104-317 101-299 (467)
47 PLN02735 carbamoyl-phosphate s 99.4 2.2E-11 4.9E-16 134.9 21.8 222 60-315 606-877 (1102)
48 PRK08463 acetyl-CoA carboxylas 99.4 4.5E-11 9.7E-16 122.0 22.0 177 104-317 97-296 (478)
49 PRK12815 carB carbamoyl phosph 99.4 4.2E-11 9.1E-16 132.7 23.1 216 60-315 587-840 (1068)
50 PRK06524 biotin carboxylase-li 99.4 1.3E-11 2.8E-16 125.0 17.4 192 95-316 117-325 (493)
51 TIGR00514 accC acetyl-CoA carb 99.4 1.9E-11 4E-16 123.7 18.0 177 104-317 98-296 (449)
52 PRK07178 pyruvate carboxylase 99.4 3.7E-11 8.1E-16 122.4 19.9 185 97-317 91-295 (472)
53 PRK05294 carB carbamoyl phosph 99.4 2.8E-11 6E-16 134.3 20.2 221 60-315 39-305 (1066)
54 PRK00885 phosphoribosylamine-- 99.4 3.7E-11 8E-16 120.5 19.0 108 97-220 79-200 (420)
55 TIGR01369 CPSaseII_lrg carbamo 99.4 3.2E-11 6.9E-16 133.5 19.8 221 60-315 38-303 (1050)
56 PRK08591 acetyl-CoA carboxylas 99.3 4.5E-11 9.7E-16 120.8 18.2 178 104-317 98-296 (451)
57 TIGR01235 pyruv_carbox pyruvat 99.3 8.6E-11 1.9E-15 130.1 20.9 177 104-317 98-296 (1143)
58 PLN02257 phosphoribosylamine-- 99.3 1.1E-10 2.4E-15 117.9 20.1 210 95-336 77-316 (434)
59 PRK12815 carB carbamoyl phosph 99.3 1.2E-10 2.5E-15 129.2 20.1 223 60-319 39-306 (1068)
60 PRK06111 acetyl-CoA carboxylas 99.3 1.1E-10 2.5E-15 117.7 17.1 178 104-316 98-295 (450)
61 TIGR00877 purD phosphoribosyla 99.3 3.5E-10 7.6E-15 113.3 19.6 187 96-317 80-293 (423)
62 PF02655 ATP-grasp_3: ATP-gras 99.3 2.2E-11 4.9E-16 106.7 9.5 151 118-314 1-158 (161)
63 PRK13789 phosphoribosylamine-- 99.3 2.4E-10 5.2E-15 115.1 18.0 109 96-220 84-206 (426)
64 PRK12999 pyruvate carboxylase; 99.2 3.5E-10 7.5E-15 125.7 18.9 178 104-317 102-300 (1146)
65 PF15632 ATPgrasp_Ter: ATP-gra 99.2 8.8E-10 1.9E-14 107.2 18.9 186 80-315 67-282 (329)
66 PRK06395 phosphoribosylamine-- 99.2 1.4E-09 3.1E-14 109.8 20.5 177 105-315 89-294 (435)
67 TIGR02712 urea_carbox urea car 99.2 3.8E-09 8.3E-14 118.1 23.1 177 104-317 97-295 (1201)
68 COG0439 AccC Biotin carboxylas 99.1 8.6E-10 1.9E-14 111.1 13.6 184 97-317 92-296 (449)
69 PF02750 Synapsin_C: Synapsin, 99.1 1.1E-09 2.3E-14 97.9 12.4 186 110-334 1-201 (203)
70 COG0458 CarB Carbamoylphosphat 99.0 6.6E-09 1.4E-13 102.2 15.0 221 60-315 27-291 (400)
71 PRK05784 phosphoribosylamine-- 99.0 5.1E-08 1.1E-12 99.8 20.7 107 96-219 85-216 (486)
72 PF02786 CPSase_L_D2: Carbamoy 98.9 6.6E-09 1.4E-13 95.3 10.9 161 120-315 1-181 (211)
73 COG0027 PurT Formate-dependent 98.9 2.9E-08 6.3E-13 94.5 15.2 220 60-322 33-293 (394)
74 PF02955 GSH-S_ATP: Prokaryoti 98.9 7E-09 1.5E-13 92.3 10.1 137 141-313 11-161 (173)
75 PF14398 ATPgrasp_YheCD: YheC/ 98.8 1.7E-07 3.6E-12 88.8 16.8 193 100-322 3-241 (262)
76 COG1821 Predicted ATP-utilizin 98.8 1.9E-08 4.1E-13 93.2 9.9 175 79-315 73-257 (307)
77 PF02222 ATP-grasp: ATP-grasp 98.6 9.3E-08 2E-12 85.1 8.3 153 138-318 4-165 (172)
78 PRK13277 5-formaminoimidazole- 98.6 7.3E-07 1.6E-11 87.5 14.2 161 119-312 125-317 (366)
79 KOG3895 Synaptic vesicle prote 98.6 5E-07 1.1E-11 87.0 12.6 221 79-336 155-392 (488)
80 PRK13278 purP 5-formaminoimida 98.6 1.9E-06 4E-11 85.1 16.5 175 104-314 107-312 (358)
81 COG0026 PurK Phosphoribosylami 98.6 4.4E-06 9.6E-11 81.7 18.6 223 59-318 21-271 (375)
82 COG2232 Predicted ATP-dependen 98.6 3.4E-06 7.4E-11 81.0 17.1 162 110-319 111-277 (389)
83 PF14397 ATPgrasp_ST: Sugar-tr 98.5 9.8E-06 2.1E-10 77.7 19.2 195 110-319 16-265 (285)
84 COG3919 Predicted ATP-grasp en 98.4 1.3E-06 2.8E-11 82.8 9.5 170 109-315 103-289 (415)
85 PF03133 TTL: Tubulin-tyrosine 98.4 1.9E-07 4.2E-12 89.1 4.1 74 141-218 42-125 (292)
86 KOG0238 3-Methylcrotonyl-CoA c 98.3 2.8E-05 6E-10 78.4 15.5 175 103-315 93-290 (670)
87 PF01071 GARS_A: Phosphoribosy 98.1 2.1E-05 4.5E-10 71.2 10.3 89 120-223 2-106 (194)
88 COG0151 PurD Phosphoribosylami 98.0 0.00023 4.9E-09 70.9 16.7 138 46-223 53-206 (428)
89 COG4770 Acetyl/propionyl-CoA c 98.0 6.2E-05 1.3E-09 76.9 11.9 176 104-316 98-295 (645)
90 COG1038 PycA Pyruvate carboxyl 97.9 9.6E-05 2.1E-09 78.0 11.2 172 104-312 104-297 (1149)
91 KOG0369 Pyruvate carboxylase [ 97.5 0.0013 2.9E-08 68.5 12.2 175 103-314 129-325 (1176)
92 PF14305 ATPgrasp_TupA: TupA-l 97.0 0.06 1.3E-06 50.4 17.6 184 110-322 10-226 (239)
93 KOG0370 Multifunctional pyrimi 96.8 0.0056 1.2E-07 66.1 9.4 194 105-336 1017-1230(1435)
94 TIGR01016 sucCoAbeta succinyl- 96.8 0.003 6.6E-08 62.9 6.8 88 123-221 7-116 (386)
95 PRK00696 sucC succinyl-CoA syn 96.5 0.0065 1.4E-07 60.6 7.4 90 121-221 5-116 (388)
96 KOG2156 Tubulin-tyrosine ligas 96.5 0.007 1.5E-07 61.6 7.3 73 141-218 282-360 (662)
97 PF14243 DUF4343: Domain of un 95.4 0.6 1.3E-05 39.6 13.3 109 167-315 3-117 (130)
98 KOG2157 Predicted tubulin-tyro 95.3 0.1 2.2E-06 53.7 9.6 56 163-221 197-270 (497)
99 PF14403 CP_ATPgrasp_2: Circul 95.0 0.078 1.7E-06 53.9 7.8 139 60-209 211-386 (445)
100 KOG0368 Acetyl-CoA carboxylase 94.8 0.23 5E-06 56.4 11.1 194 97-312 155-375 (2196)
101 PF13549 ATP-grasp_5: ATP-gras 93.7 0.066 1.4E-06 49.6 3.6 92 119-220 10-120 (222)
102 PF08442 ATP-grasp_2: ATP-gras 90.4 0.77 1.7E-05 41.9 6.4 78 138-218 14-113 (202)
103 PF07065 D123: D123; InterPro 89.3 3.1 6.7E-05 40.3 9.9 91 199-318 151-243 (299)
104 KOG0237 Glycinamide ribonucleo 87.9 32 0.00069 36.5 16.4 130 58-220 64-207 (788)
105 PRK14046 malate--CoA ligase su 87.4 2.1 4.5E-05 43.1 7.6 79 138-220 15-115 (392)
106 PHA02117 glutathionylspermidin 86.6 9.8 0.00021 38.4 11.9 163 52-230 193-380 (397)
107 COG1759 5-formaminoimidazole-4 81.0 2.3 4.9E-05 41.5 4.5 66 120-207 124-203 (361)
108 COG0045 SucC Succinyl-CoA synt 77.7 6.8 0.00015 39.1 6.7 75 138-215 15-108 (387)
109 KOG2158 Tubulin-tyrosine ligas 71.6 2 4.4E-05 43.7 1.4 76 140-221 203-285 (565)
110 PRK10507 bifunctional glutathi 68.2 47 0.001 35.5 10.7 107 104-229 482-600 (619)
111 PLN02235 ATP citrate (pro-S)-l 66.1 20 0.00044 36.4 7.2 72 138-209 23-114 (423)
112 PF02729 OTCace_N: Aspartate/o 65.5 16 0.00035 31.3 5.6 75 26-112 37-123 (142)
113 PLN00124 succinyl-CoA ligase [ 57.8 10 0.00022 38.6 3.4 62 123-195 34-106 (422)
114 COG0754 Gsp Glutathionylspermi 55.7 6.9 0.00015 38.8 1.7 104 102-223 248-357 (387)
115 KOG0370 Multifunctional pyrimi 53.0 3.9 8.5E-05 45.2 -0.4 179 104-314 481-671 (1435)
116 PF02951 GSH-S_N: Prokaryotic 45.1 43 0.00094 27.9 4.7 38 78-116 77-119 (119)
117 PF04174 CP_ATPgrasp_1: A circ 40.5 28 0.00062 34.2 3.4 27 287-315 67-93 (330)
118 PF12058 DUF3539: Protein of u 38.4 21 0.00045 28.2 1.6 19 203-221 3-23 (88)
119 PF08532 Glyco_hydro_42M: Beta 38.0 53 0.0012 29.6 4.6 67 47-123 34-103 (207)
120 KOG2983 Uncharacterized conser 33.6 2.5E+02 0.0055 27.0 8.2 85 200-317 165-255 (334)
121 TIGR02049 gshA_ferroox glutama 33.5 1.3E+02 0.0027 30.3 6.5 54 168-224 260-335 (403)
122 PRK02102 ornithine carbamoyltr 31.9 71 0.0015 31.4 4.6 73 27-112 45-130 (331)
123 PRK12562 ornithine carbamoyltr 30.4 86 0.0019 30.9 4.9 74 27-112 44-129 (334)
124 PF08886 GshA: Glutamate-cyste 29.6 1.6E+02 0.0034 29.8 6.5 57 168-227 263-342 (404)
125 PRK03515 ornithine carbamoyltr 29.3 92 0.002 30.7 4.9 72 27-111 44-128 (336)
126 PF04556 DpnII: DpnII restrict 27.4 87 0.0019 30.2 4.2 36 280-317 179-220 (286)
127 PRK00779 ornithine carbamoyltr 27.3 90 0.002 30.2 4.4 74 27-112 42-127 (304)
128 PRK14805 ornithine carbamoyltr 24.9 1E+02 0.0023 29.8 4.4 74 27-113 37-123 (302)
129 TIGR00658 orni_carb_tr ornithi 24.9 1E+02 0.0023 29.7 4.4 72 27-111 38-122 (304)
130 PRK04284 ornithine carbamoyltr 24.6 1.3E+02 0.0028 29.6 5.0 72 27-111 44-128 (332)
131 TIGR00670 asp_carb_tr aspartat 24.2 96 0.0021 30.0 4.0 73 28-113 39-125 (301)
132 cd03143 A4_beta-galactosidase_ 23.5 1.6E+02 0.0035 24.8 4.9 59 47-115 30-91 (154)
133 PRK01713 ornithine carbamoyltr 21.9 1.5E+02 0.0032 29.2 4.8 73 27-112 45-130 (334)
134 PRK00856 pyrB aspartate carbam 20.1 1.6E+02 0.0034 28.6 4.6 74 27-113 44-131 (305)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=4.6e-88 Score=643.73 Aligned_cols=301 Identities=53% Similarity=0.955 Sum_probs=249.5
Q ss_pred CCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCC
Q 019076 26 PERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPE 105 (346)
Q Consensus 26 ~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~ 105 (346)
+++++|||||++||+++|+|++|+.+|+ ++||+|++||+++||++|||||+||||+|+..|.+.+++|.++||+
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~~~~~------~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~ 78 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFIDLAR------SRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPE 78 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHCCCCC------CCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TT
T ss_pred ccceEEEEEECHHHHHHhhHHHHHHHHH------hcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 4689999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeE
Q 019076 106 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 185 (346)
Q Consensus 106 v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~ 185 (346)
++||||+++|++++||.+|++.|.++........|++|+++++.++.+++.+.+.+++|+||+||||++||||++||.|+
T Consensus 79 v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Ma 158 (307)
T PF05770_consen 79 VVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMA 158 (307)
T ss_dssp SEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEE
T ss_pred eEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEE
Confidence 99999999999999999999999998776666799999999997666777788889999999999999999999999999
Q ss_pred EEeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCC--
Q 019076 186 LAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD-- 263 (346)
Q Consensus 186 lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~-- 263 (346)
||+++++|+++++|||+||||||+|++|||||||++++++.|+|+||++.++.....+.|+|+++|+.++.+..+.++
T Consensus 159 ivf~~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~ 238 (307)
T PF05770_consen 159 IVFNEEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKD 238 (307)
T ss_dssp EE-SGGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-
T ss_pred EEECHHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccC
Confidence 999999999999999999999999999999999999999999999999877665566889999999988777665555
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCcccHHHHHHHHHH
Q 019076 264 PGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLS 332 (346)
Q Consensus 264 ~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~ 332 (346)
+...++|+.++++++|.++|++|||+|||||||++++|+++||||||||||||+|||+|++.|+++|++
T Consensus 239 ~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l~~~~~~ 307 (307)
T PF05770_consen 239 PSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVLTDFILD 307 (307)
T ss_dssp TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHHHHHHH-
T ss_pred cccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHHHHHhhC
Confidence 455678889999999999999999999999999999996689999999999999999999999999974
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=5.9e-80 Score=594.81 Aligned_cols=309 Identities=71% Similarity=1.121 Sum_probs=282.2
Q ss_pred CCCCCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHh
Q 019076 23 VLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 23 ~~~~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
.+.+++++|||||++||++||+|++|+++|+ ++||++++||+++||++|||||+||||++++.|++.+++|..+
T Consensus 16 ~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~------~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e 89 (328)
T PLN02941 16 SSQQKRFVVGYALTPKKVKSFLQPSLEALAR------SKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREK 89 (328)
T ss_pred cccCCceEEEEEECHHHHHHHhhHHHHHHHH------HCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
|||++||||+++|++|+||+.|+++|.+++++.+..+|++|+|+++.+...++......++++||+|+||++||||++||
T Consensus 90 ~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh 169 (328)
T PLN02941 90 HPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSH 169 (328)
T ss_pred CCCcEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCcccc
Confidence 99999999999999999999999999999888777889999999997544334344567899999999999999999999
Q ss_pred eeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCC-
Q 019076 183 ELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD- 261 (346)
Q Consensus 183 ~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~- 261 (346)
+|++|+++++|..+++|+++||||||+|+|||||||||++.++.|+|+|||..++..+..|.++|+++++.++.+..+.
T Consensus 170 ~m~lv~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~ 249 (328)
T PLN02941 170 KMSLAYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADN 249 (328)
T ss_pred ceEEecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999997544444557899999998877665554
Q ss_pred --CCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhh
Q 019076 262 --LDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSK 337 (346)
Q Consensus 262 --~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~~i~~~ 337 (346)
++|...++|+++++++||.+++++||++|||||||++.+++++|+||||||||||+|||+|+..|+|||+++++++
T Consensus 250 ~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~~~l~~~~~~~~~~~ 327 (328)
T PLN02941 250 GGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYETVLTDFLLSLVQKK 327 (328)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCccccCCchHHHHHHHHHHHHhcC
Confidence 5555567888889999999999999999999999999777678999999999999999999999999999999876
No 3
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.7e-28 Score=235.71 Aligned_cols=229 Identities=21% Similarity=0.269 Sum_probs=162.2
Q ss_pred HhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhH-HHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHh
Q 019076 52 ARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVAD 130 (346)
Q Consensus 52 ~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~ 130 (346)
.++++..+..++.+..+.... ...-..+|++|.|.+..... -.+.+. .+.-|++||||+++|..|.||+.+++.|..
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~i~~R~~~~~~~~~~~~~~-~E~~G~~viN~p~~i~~~~nK~~~~~~l~~ 129 (318)
T COG0189 52 ARLVEVGEVIGLHYELIEEED-LSLLDELDVIIMRKDPPFDFATRFLRL-AERKGVPVINDPQSIRRCRNKLYTTQLLAK 129 (318)
T ss_pred HHhhhhhhccccccccccccc-cchhccCCEEEEecCCchhhHHHHHHH-HHHcCCeEECCHHHHHhhhhHHHHHHHHHh
Confidence 333333334455554443332 22334899999999874332 112222 245789999999999999999999999996
Q ss_pred ccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChh-hhhcc--------CCCeE
Q 019076 131 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF-SLSEL--------EPPML 201 (346)
Q Consensus 131 l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~-~L~~l--------~~p~v 201 (346)
+++|+|+|+++.+ ...... .....++||+|+||+. || ++.++.++.+.+ +|.++ ..+++
T Consensus 130 -------~~ipvP~T~i~~~-~~~~~~-~~~~~~g~pvVlKp~~--Gs-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~i 197 (318)
T COG0189 130 -------AGIPVPPTLITRD-PDEAAE-FVAEHLGFPVVLKPLD--GS-GGRGVFLVEDADPELLSLLETLTQEGRKLII 197 (318)
T ss_pred -------cCCCCCCEEEEcC-HHHHHH-HHHHhcCCCEEEeeCC--CC-CccceEEecCCChhHHHHHHHHhccccceEe
Confidence 6899999999963 333323 3566799999999998 76 899999999998 76654 23699
Q ss_pred EEecccCCCeEEEEEEECCEEE-E--EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHH
Q 019076 202 LQEFVNHGGILFKIYIIGETIK-V--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERL 278 (346)
Q Consensus 202 ~QEfI~h~G~~~KV~VvG~~v~-~--~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~l 278 (346)
+||||+..+++.|.+++||... + ++++-.. .++|++| .+.++..++ .+..+++++|
T Consensus 198 vQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~---~~~~R~N--------------~a~Gg~~e~----~~l~~e~~el 256 (318)
T COG0189 198 VQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA---SGDFRSN--------------LARGGRAEP----CELTEEEEEL 256 (318)
T ss_pred hhhhcCcccCCcEEEEEeCCEEeEEeeeccccC---CCCceee--------------ccccccccc----cCCCHHHHHH
Confidence 9999999987777777766644 4 2233111 1355544 222444433 2234668999
Q ss_pred HHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 279 ARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 279 A~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
|.+++++||+.++||||+++. +++||+|||..|++++
T Consensus 257 A~kaa~~lGl~~~GVDiie~~---~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 257 AVKAAPALGLGLVGVDIIEDK---DGLYVTEVNVSPTGKG 293 (318)
T ss_pred HHHHHHHhCCeEEEEEEEecC---CCcEEEEEeCCCcccc
Confidence 999999999999999999873 3699999999998876
No 4
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.95 E-value=7.1e-27 Score=224.01 Aligned_cols=246 Identities=15% Similarity=0.197 Sum_probs=171.6
Q ss_pred hhhcccccCCcEEEEecCCCC---CC-----------CCCCccEEEEcccch--hhHHHHHHHHHhCCCeeeeChHHHHH
Q 019076 53 RYILTHTNKGISFVAIDQNRP---LS-----------DQGPFDVVLHKLSGM--EWCKIIEDYRQKHPEVTILDPPDAIK 116 (346)
Q Consensus 53 r~~~~~~~~Gi~~v~id~~~~---l~-----------~q~~fDvilhK~t~~--~~~~~l~~y~~~~p~v~VIDp~~ai~ 116 (346)
++.++++++|++++.+|+++. +. ...++|++|.+..+. ......++.++. .|+.++|++.++.
T Consensus 17 ~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~-~g~~v~n~~~a~~ 95 (300)
T PRK10446 17 RLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEM-LGSYPLNESVAIA 95 (300)
T ss_pred HHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHH-CCCceecCHHHHH
Confidence 334444499999999998752 11 123789999987652 222333444443 4688999999999
Q ss_pred HhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-
Q 019076 117 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE- 195 (346)
Q Consensus 117 ~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~- 195 (346)
.|.||..+.+.|.+ ++||+|++.++. +.+.+.+. .....+||+|+||.. |+ +|.++.++.+.+++..
T Consensus 96 ~~~dK~~~~~~l~~-------~gip~P~t~~~~-~~~~~~~~-~~~~~~~P~VvKP~~--g~-~g~GV~~v~~~~~~~~~ 163 (300)
T PRK10446 96 RARDKLRSMQLLAR-------QGIDLPVTGIAH-SPDDTSDL-IDMVGGAPLVVKLVE--GT-QGIGVVLAETRQAAESV 163 (300)
T ss_pred hhhcHHHHHHHHHH-------cCCCCCCEEEeC-CHHHHHHH-HHHhCCCCEEEEECC--CC-CcccEEEEcCHHHHHHH
Confidence 99999999999996 689999998874 22222222 222237999999997 44 6899999999877653
Q ss_pred ------cCCCeEEEecccC-CCeEEEEEEECCEEEEE-EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCC
Q 019076 196 ------LEPPMLLQEFVNH-GGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 267 (346)
Q Consensus 196 ------l~~p~v~QEfI~h-~G~~~KV~VvG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~ 267 (346)
++.++++||||++ .|++++|+|+|+++..+ .|.+.. ++|.++ .+. ++...+
T Consensus 164 ~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~----~~~~~n--------~~~------g~~~~~--- 222 (300)
T PRK10446 164 IDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKE----GDFRSN--------LHR------GGAASV--- 222 (300)
T ss_pred HHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCC----Cchhhe--------ecc------CCeecc---
Confidence 3568999999987 49999999999997654 443322 133322 111 111111
Q ss_pred CCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc-----HHHHHHHHHHHHHh
Q 019076 268 ELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY-----EHIFTDFLLSLEQS 336 (346)
Q Consensus 268 ~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~-----~~~l~~~l~~~i~~ 336 (346)
.+..+.++++|.++.++||+.++|||++.+. . ++||+|||..|||+++... .+.+.+++.+.++.
T Consensus 223 -~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~-~--g~~vlEvN~~pg~~~~~~~~g~~~~~~~~~~i~~~~~~ 292 (300)
T PRK10446 223 -ASITPQEREIAIKAARTMALDVAGVDILRAN-R--GPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATT 292 (300)
T ss_pred -CCCCHHHHHHHHHHHHHhCCCEEEEEEEEcC-C--CcEEEEEECCCChhhhHHHHCcCHHHHHHHHHHHhccc
Confidence 1124568999999999999999999999864 2 3789999999999887653 44555555555433
No 5
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.95 E-value=5.8e-26 Score=214.44 Aligned_cols=243 Identities=19% Similarity=0.267 Sum_probs=174.4
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCC-------CCCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLS-------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHL 118 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~-------~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l 118 (346)
+.+.+.++ ++|+++..+++++... +..++|++|.|.........+....+ .-|++++||+++++.+
T Consensus 13 ~~l~~al~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le-~~g~~~~n~~~~~~~~ 85 (280)
T TIGR02144 13 KMLIEELE------KLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLE-ALGVPVINSSHVIEAC 85 (280)
T ss_pred HHHHHHHH------HcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHH-HCCCcEECcHHHHHHH
Confidence 34555666 9999999987765221 23578999998544222122333333 3579999999999999
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.||..+++.|++ ++||+|++..+. +...+.+ ....++||+|+||.. |+ +++++.++.+.+++.++
T Consensus 86 ~dK~~~~~~l~~-------~gip~P~t~~~~-~~~~~~~--~~~~~~~P~vvKP~~--g~-~g~gv~~v~~~~~l~~~~~ 152 (280)
T TIGR02144 86 GDKIFTYLKLAK-------AGVPTPRTYLAF-DREAALK--LAEALGYPVVLKPVI--GS-WGRLVALIRDKDELESLLE 152 (280)
T ss_pred hhHHHHHHHHHH-------CCcCCCCeEeeC-CHHHHHH--HHHHcCCCEEEEECc--CC-CcCCEEEECCHHHHHHHHH
Confidence 999999999886 589999999874 2222222 234589999999987 54 57899999999886541
Q ss_pred ---------CCCeEEEecccCCCeEEEEEEECCEEE-EEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCC
Q 019076 197 ---------EPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 266 (346)
Q Consensus 197 ---------~~p~v~QEfI~h~G~~~KV~VvG~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~ 266 (346)
..++++||||++.|++++++|+|+++. ++.|.+ .++ ..+. +. ++...|
T Consensus 153 ~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~-----~~~~--------~~------g~~~~~-- 210 (280)
T TIGR02144 153 HKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHW-----RTNT--------AR------GGKAEP-- 210 (280)
T ss_pred HHHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cch-----hhhh--------hc------CCceec--
Confidence 257999999997799999999999975 455554 222 2111 00 111111
Q ss_pred CCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCc-----ccHHHHHHHHHHHH
Q 019076 267 AELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP-----DYEHIFTDFLLSLE 334 (346)
Q Consensus 267 ~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~-----~~~~~l~~~l~~~i 334 (346)
.+..+.++++|.++.+++|+.++|||++.+.+ | .+||+|||..|||.++. ++...+.+++.+++
T Consensus 211 --~~~~~~~~~~a~~~~~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 279 (280)
T TIGR02144 211 --CPLDEEVEELAVKAAEAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEFKNSVRVTGVNVAGEILEYAVSLV 279 (280)
T ss_pred --cCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcchhhhhHhhCCCHHHHHHHHHHHhh
Confidence 12245689999999999999999999998743 3 59999999999999864 44677777776655
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.94 E-value=7.2e-25 Score=205.61 Aligned_cols=231 Identities=19% Similarity=0.289 Sum_probs=166.6
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCC---CCC----CCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRP---LSD----QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHL 118 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~---l~~----q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l 118 (346)
+.+.+.++ ++|+++..++++.. +.. ...+|+++.|.........+.+..+. -+++++|+++++..+
T Consensus 14 ~~l~~a~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~ 86 (277)
T TIGR00768 14 KMLKEAAE------ELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLES-LGVPVINSSDAILNA 86 (277)
T ss_pred HHHHHHHH------HcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHH-CCCeeeCCHHHHHHH
Confidence 45666666 99999999988642 221 34689999998432222344444444 478999999999999
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.||..+++.|++ .+|++|++..+. +.+++.+. ...++||+|+||.. |+ .|.++.++.+.+++..+
T Consensus 87 ~dK~~~~~~l~~-------~gi~~P~t~~~~-~~~~~~~~--~~~~~~p~vvKP~~--g~-~g~gv~~i~~~~~l~~~~~ 153 (277)
T TIGR00768 87 GDKFLTSQLLAK-------AGLPQPRTGLAG-SPEEALKL--IEEIGFPVVLKPVF--GS-WGRLVSLARDKQAAETLLE 153 (277)
T ss_pred hhHHHHHHHHHH-------CCCCCCCEEEeC-CHHHHHHH--HHhcCCCEEEEECc--CC-CCCceEEEcCHHHHHHHHH
Confidence 999999999996 589999999885 33333222 24578999999998 43 46899999999887542
Q ss_pred -----C---CCeEEEecccCC-CeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCC
Q 019076 197 -----E---PPMLLQEFVNHG-GILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 267 (346)
Q Consensus 197 -----~---~p~v~QEfI~h~-G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~ 267 (346)
. .++++||||++. |.+++|+|+|+++..+.++..+ ++|.++ .+. ++...+
T Consensus 154 ~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~----~~~~~n--------~~~------g~~~~~--- 212 (277)
T TIGR00768 154 HFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITS----GHWRTN--------LAR------GGKAEP--- 212 (277)
T ss_pred HHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCC----Cchhhh--------hhc------CCeeee---
Confidence 2 379999999977 4899999999998765444321 123221 111 111111
Q ss_pred CCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 268 ELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 268 ~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
.+..++++++|.+++++||+.++|||++++. +| ++||+|||..||+.++.
T Consensus 213 -~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~~~~~ 262 (277)
T TIGR00768 213 -CPLTEEIEELAIKAAKALGLDVVGIDLLESE-DR-GLLVNEVNPNPEFKNSV 262 (277)
T ss_pred -cCCCHHHHHHHHHHHHHhCCCeEEEEEEEcC-CC-CeEEEEEcCCcchhhhH
Confidence 1123568999999999999999999999975 34 69999999999998764
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.94 E-value=6.2e-26 Score=204.03 Aligned_cols=168 Identities=28% Similarity=0.457 Sum_probs=97.8
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.||+.++++|++ ++||+|+|.++.+ .+.+.+.+...+ +||+|+||+. |+ .+.+|.++.+.+++..+
T Consensus 2 ~dK~~~~~~l~~-------~gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~--g~-~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 2 EDKLLTLQLLAK-------AGIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLR--GS-SGRGVFLINSPDELESLLD 69 (190)
T ss_dssp HBHHHHHHHHHH-------TT-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH
T ss_pred CCHHHHHHHHHH-------CCcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCC--CC-CCCEEEEecCHHHHHHHHH
Confidence 589999999997 6899999999853 334444444443 8999999987 44 68899999999887653
Q ss_pred -----CCCeEEEecccCCC-eEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC
Q 019076 197 -----EPPMLLQEFVNHGG-ILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP 270 (346)
Q Consensus 197 -----~~p~v~QEfI~h~G-~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p 270 (346)
+.++++|+||++.+ +++||+|||++++.+.+++.++ ++|+++ .+. ++..++ ..
T Consensus 70 ~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~n--------~~~------g~~~~~----~~ 128 (190)
T PF08443_consen 70 AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRTN--------LSR------GGKVEP----YD 128 (190)
T ss_dssp -----TTT-EEEE----SS---EEEEEETTEEEEEEE-----------------------------------EE------
T ss_pred HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchhh--------hcc------CceEEE----ec
Confidence 57999999999885 9999999999998766655443 245543 111 222222 11
Q ss_pred ChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 271 PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 271 ~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
..+++.++|.+++++||++++|||++..+ +++||+|||.+|||++++..
T Consensus 129 l~~e~~~~a~~~~~~lgl~~~giDi~~~~---~~~~v~EvN~~~~~~~~~~~ 177 (190)
T PF08443_consen 129 LPEEIKELALKAARALGLDFAGIDILDTN---DGPYVLEVNPNPGFRGIEEA 177 (190)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEEET---TEEEEEEEETT---TTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEEEecC---CCeEEEEecCCchHhHHHHH
Confidence 23568999999999999999999977653 36999999999999998664
No 8
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.89 E-value=8.2e-22 Score=190.40 Aligned_cols=228 Identities=16% Similarity=0.218 Sum_probs=151.4
Q ss_pred ccccCCcEEEEecCCCCCC---------------C---------------CCCccEEEEcccchh-----hHHHHHHHHH
Q 019076 57 THTNKGISFVAIDQNRPLS---------------D---------------QGPFDVVLHKLSGME-----WCKIIEDYRQ 101 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~---------------~---------------q~~fDvilhK~t~~~-----~~~~l~~y~~ 101 (346)
++.++|+++..+++++... + ...||++|.|-.... ....+.++.+
T Consensus 26 aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le 105 (312)
T TIGR01380 26 EAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYIYATYLLELAD 105 (312)
T ss_pred HHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCChhhhHHHHHHHHHH
Confidence 3339999999888864210 0 136899999974321 1223444444
Q ss_pred hCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 102 KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 102 ~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
. -|+.|+||+++++.+.||.++++.+. ++|+|++.. +...+.+.+.. .+ |+|+||+. |+ ++
T Consensus 106 ~-~g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~-~~~~~~~~~~~--~g-~vVvKPl~--G~-~G 166 (312)
T TIGR01380 106 P-TGTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTR-DKAEIRAFLAE--HG-DIVLKPLD--GM-GG 166 (312)
T ss_pred h-CCCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeC-CHHHHHHHHHH--cC-CEEEEECC--CC-CC
Confidence 3 57999999999999999998766531 699999764 34334333332 34 99999998 55 67
Q ss_pred eeeEEEeCh-hhh-------hcc-CCCeEEEecccC-CCeEEEEEEECCEEEE--EEeecCCCcccchhhcccceeeccc
Q 019076 182 HELFLAYDR-FSL-------SEL-EPPMLLQEFVNH-GGILFKIYIIGETIKV--VRRFSLPNVSKRELAKVVSVFRFPR 249 (346)
Q Consensus 182 h~m~lv~~~-~~L-------~~l-~~p~v~QEfI~h-~G~~~KV~VvG~~v~~--~~R~Slp~~~~~~~~~~~g~~~~~~ 249 (346)
+++.++.+. ..+ ..+ ..|+++|+||+. .+.|+||+|+|++++. +.|.+.+ ++|++|
T Consensus 167 ~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai~R~~~~----gd~r~N-------- 234 (312)
T TIGR01380 167 EGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAVARIPAG----GEFRGN-------- 234 (312)
T ss_pred ceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEEEecCCC----CCcccc--------
Confidence 889988652 222 222 468999999986 3679999999999764 4454433 244433
Q ss_pred ccccccccCCCCCCCCCCCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEecCcCCeEEEEeccCC--CCCCCCccc--
Q 019076 250 VSSAAASADDADLDPGIAELPPRPLLERLARELR---HRLGLRLFNIDMIREHGMRDVFYVIDINYF--PGYGKMPDY-- 322 (346)
Q Consensus 250 vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~lGl~lfGvDvi~~~~~g~~~~ViDVN~f--Pg~~gv~~~-- 322 (346)
++. ++...+ .++.++..++|.+++ +++|+.+.|||+| + ++|+|||.. +||.++...
T Consensus 235 ~~~------Gg~~~~----~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---g----~~v~EvN~~~p~~~~~~~~~~g 297 (312)
T TIGR01380 235 LAV------GGRGEA----TELSERDREICADVAPELKRRGLLFVGIDVI---G----GYLTEVNVTSPTGIREIDRQKG 297 (312)
T ss_pred ccC------Cceeec----cCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe---C----CEEEEEecCCcchHHHHHhhhC
Confidence 111 222222 122355789999988 6779999999999 2 369999975 589777543
Q ss_pred ---HHHHHHHHHH
Q 019076 323 ---EHIFTDFLLS 332 (346)
Q Consensus 323 ---~~~l~~~l~~ 332 (346)
...+.+++.+
T Consensus 298 ~~ia~~i~d~l~~ 310 (312)
T TIGR01380 298 VNIAGMLWDAIEK 310 (312)
T ss_pred CCHHHHHHHHHHh
Confidence 4555555544
No 9
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.89 E-value=3.8e-22 Score=203.63 Aligned_cols=263 Identities=21% Similarity=0.294 Sum_probs=193.9
Q ss_pred CCcEEEEEEecccccccc-cchHHHHHHhhhcccccCCcEEEE----ecCCCCCCCCCCccEEEEcccchhhHHHHHHHH
Q 019076 26 PERLVVGYALTSKKKKSF-LQPKLEILARYILTHTNKGISFVA----IDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYR 100 (346)
Q Consensus 26 ~~~~~vGy~l~~kK~~~~-~~~~~~~~~r~~~~~~~~Gi~~v~----id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~ 100 (346)
.+..+||.|.+.||.+|- .+.-+.+++. -.-|+++. +-++.|++.|+-+||+|.-.+...-....++|+
T Consensus 38 ~r~i~vGICaM~kK~~SKPm~~il~rli~------f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~ 111 (1018)
T KOG1057|consen 38 ERQIVVGICAMAKKSKSKPMKEILERLIL------FKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYA 111 (1018)
T ss_pred ccceEEEEeechhhhccChHHHHHHHHHh------cceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHH
Confidence 345799999999996553 3344555665 22344433 346889999999999999998877788899998
Q ss_pred Hh-CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCh-hhHH---------HhhCCCCcEE
Q 019076 101 QK-HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI-PDQV---------FEAGLKLPLV 169 (346)
Q Consensus 101 ~~-~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~-~~~l---------~~~~l~fPvV 169 (346)
+. +| .|||.+..++.++||...|++|+. .||++|+..++.++..+- ...+ .-..+.-|+|
T Consensus 112 kLRnP--FviNdL~mQyll~DRR~Vy~iLe~-------~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFV 182 (1018)
T KOG1057|consen 112 KLRNP--FVINDLDMQYLLQDRREVYSILEA-------EGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFV 182 (1018)
T ss_pred HhcCC--eeeccccHHHHHHHHHHHHHHHHH-------cCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcc
Confidence 74 45 889999999999999999999996 699999999887654321 1111 1123567999
Q ss_pred EecCcCCCCCCceeeEEEeChhh-------hhcc---------------CCCeEEEecccCCCeEEEEEEECCEE-EEEE
Q 019076 170 AKPLVVDGSAKSHELFLAYDRFS-------LSEL---------------EPPMLLQEFVNHGGILFKIYIIGETI-KVVR 226 (346)
Q Consensus 170 vKP~~a~GS~~sh~m~lv~~~~~-------L~~l---------------~~p~v~QEfI~h~G~~~KV~VvG~~v-~~~~ 226 (346)
-||+. | +.|+++|.+.... |+++ ...++.+||++++|.|.|||.||..+ ++-.
T Consensus 183 EKPVs--~--EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEa 258 (1018)
T KOG1057|consen 183 EKPVS--A--EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEA 258 (1018)
T ss_pred cCCCC--c--ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhh
Confidence 99997 3 6899999998632 4443 24699999999999999999999996 5678
Q ss_pred eecCCCcccchhhcccc-eeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeE
Q 019076 227 RFSLPNVSKRELAKVVS-VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVF 305 (346)
Q Consensus 227 R~Slp~~~~~~~~~~~g-~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~ 305 (346)
|+| |-++.-..+..+| ..+|+.+ ..+..+.+|.+++-+++..++|||+++.+| .-
T Consensus 259 RKS-PvvDGkV~Rns~GKEvRYpv~--------------------Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G---~S 314 (1018)
T KOG1057|consen 259 RKS-PVVDGKVERNSDGKEVRYPVI--------------------LNSSEKQIARKVCIAFKQTVCGFDLLRANG---KS 314 (1018)
T ss_pred ccC-ccccceeeecCCCceeeceee--------------------cChhhHHHHhHHHhhccccccchHHhhcCC---ce
Confidence 888 5553211111111 1222221 123458899999999999999999999764 67
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHHH
Q 019076 306 YVIDINYFPGYGKMPDYEHIFTDFLL 331 (346)
Q Consensus 306 ~ViDVN~fPg~~gv~~~~~~l~~~l~ 331 (346)
||||||.|.-.++...|+.-.+..|-
T Consensus 315 YVcDVNGfSFVKns~kYYDd~AkIL~ 340 (1018)
T KOG1057|consen 315 YVCDVNGFSFVKNSNKYYDDCAKILG 340 (1018)
T ss_pred EEEeccceeeeecchhhhHHHHHHHh
Confidence 99999999999998888765555444
No 10
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.89 E-value=8.8e-21 Score=181.41 Aligned_cols=230 Identities=17% Similarity=0.188 Sum_probs=161.0
Q ss_pred ccccCCcEEEEecCCCCCCC---CCCccEEEEcccchh-hHHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhc
Q 019076 57 THTNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADL 131 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~~---q~~fDvilhK~t~~~-~~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l 131 (346)
+.+++|++++.|+.+..+.+ ...+|+||....+.. ....++.+.+. -+++++.+ +.++..|.||..+.+.|.+
T Consensus 31 al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~- 108 (304)
T PRK01372 31 ALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLEL-LGIPYTGSGVLASALAMDKLRTKLVWQA- 108 (304)
T ss_pred HHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-
Confidence 33489999999998866654 457899999864421 11345666655 48999876 7999999999999999986
Q ss_pred cccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEe
Q 019076 132 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQE 204 (346)
Q Consensus 132 ~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QE 204 (346)
.+|++|++..+.. .+.... ....++||+|+||..+. +|.++.++.+.+++.+. ..++++||
T Consensus 109 ------~gIp~p~~~~~~~-~~~~~~--~~~~~~~P~ivKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe 176 (304)
T PRK01372 109 ------AGLPTPPWIVLTR-EEDLLA--AIDKLGLPLVVKPAREG---SSVGVSKVKEEDELQAALELAFKYDDEVLVEK 176 (304)
T ss_pred ------CCCCCCCEEEEeC-cchHHH--HHhhcCCCEEEeeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 5899999998853 222222 23568999999999844 46889999999887542 56899999
Q ss_pred cccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHH
Q 019076 205 FVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLAREL 282 (346)
Q Consensus 205 fI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l 282 (346)
||+ |++|.|.|+|+++....+....+ +.++|......+.. ..+..+++ ...+.++++|.++
T Consensus 177 ~i~--G~E~~v~vi~~~~~~~~~~~~~~----------~~~~~~~~~~~g~~~~~~p~~~~~-----~~~~~l~~~a~~~ 239 (304)
T PRK01372 177 YIK--GRELTVAVLGGKALPVIEIVPAG----------EFYDYEAKYLAGGTQYICPAGLPA-----EIEAELQELALKA 239 (304)
T ss_pred ccC--CEEEEEEEECCCccceEEEEecC----------CEEeeeccccCCCeEEEeCCCCCH-----HHHHHHHHHHHHH
Confidence 996 99999999999865333222111 12222221111100 00111111 1134578999999
Q ss_pred HHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 283 RHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 283 ~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.++||+. +++||++.+. +| ++||+|||..||+.+-
T Consensus 240 ~~~lg~~g~~~iD~~~~~-~g-~~~viEvN~~p~~~~~ 275 (304)
T PRK01372 240 YRALGCRGWGRVDFMLDE-DG-KPYLLEVNTQPGMTSH 275 (304)
T ss_pred HHHhCCcceEEEEEEEcC-CC-CEEEEEecCCCCCCcc
Confidence 9999995 6679999985 34 6999999999999764
No 11
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.88 E-value=1.9e-20 Score=179.81 Aligned_cols=242 Identities=17% Similarity=0.176 Sum_probs=160.5
Q ss_pred HHHHhhhcccccCCcEEEEecCCCC-------CC--------CCCCccEEEEcccchhh-HHHHHHHHHhCCCeeeeCh-
Q 019076 49 EILARYILTHTNKGISFVAIDQNRP-------LS--------DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP- 111 (346)
Q Consensus 49 ~~~~r~~~~~~~~Gi~~v~id~~~~-------l~--------~q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp- 111 (346)
....+...+.+++|++++.|+.+.. +. ....+|+|+.-+.+... ...++...+. -|++++++
T Consensus 18 ~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gip~~g~~ 96 (315)
T TIGR01205 18 VSAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLEL-MGIPYTGSG 96 (315)
T ss_pred HHHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHH-cCCCccCCC
Confidence 3344444455689999999998761 11 11468999986543211 1245555544 57999886
Q ss_pred HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhH---HHhhCCCCcEEEecCcCCCCCCceeeEEEe
Q 019076 112 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQ---VFEAGLKLPLVAKPLVVDGSAKSHELFLAY 188 (346)
Q Consensus 112 ~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~---l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~ 188 (346)
+.++..|.||..+.+.|.+ ++|++|++.++..+.....+. .....++||+|+||..++ +|.++.++.
T Consensus 97 ~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~---~s~Gv~~v~ 166 (315)
T TIGR01205 97 VLASALSMDKLLTKLLWKA-------LGLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREG---SSVGVSKVK 166 (315)
T ss_pred HHHHHHHHCHHHHHHHHHH-------CCCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCC---CccCEEEEC
Confidence 8999999999999999996 689999999885222221110 112468999999998743 468899999
Q ss_pred Chhhhhcc-------CCCeEEEecccCCCeEEEEEEEC-CEEE-EEEeecCCCcccchhhcccceeeccccccccc--cc
Q 019076 189 DRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIG-ETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA--SA 257 (346)
Q Consensus 189 ~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG-~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~--~~ 257 (346)
|.++|... ..++++||||+ |++|.|.|+| ++.. ++.+.... ..+++|......+. ..
T Consensus 167 ~~~el~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 234 (315)
T TIGR01205 167 SEEELQAALDEAFEYDEEVLVEQFIK--GRELEVSILGNEEALPIIEIVPEI----------EGFYDYEAKYLDGSTEYV 234 (315)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECCCCccceEEecCCC----------CCeeCcccccCCCCeeEE
Confidence 99888643 56899999994 9999999999 4432 22211100 00122221111000 00
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 258 DDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 258 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
.+..+++ ...+.++++|.++.++||+ ++++||++++. .| ++||+|||..||+....
T Consensus 235 ~p~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~viEvN~~pg~~~~s 291 (315)
T TIGR01205 235 IPAPLDE-----ELEEKIKELALKAYKALGCRGLARVDFFLDE-EG-EIYLNEINTIPGMTAIS 291 (315)
T ss_pred eCCCCCH-----HHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCCcc
Confidence 1111211 1135689999999999999 68899999985 33 69999999999998643
No 12
>PRK05246 glutathione synthetase; Provisional
Probab=99.87 E-value=5.2e-21 Score=185.03 Aligned_cols=235 Identities=17% Similarity=0.239 Sum_probs=156.6
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCCC---------------C---------------CCCccEEEEcccchh-----
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPLS---------------D---------------QGPFDVVLHKLSGME----- 91 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l~---------------~---------------q~~fDvilhK~t~~~----- 91 (346)
.+.+.|+ ++|+++..+++++-.. . ...||+|+.|.....
T Consensus 23 ~l~~aa~------~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~ 96 (316)
T PRK05246 23 AMMLEAQ------RRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDMEYI 96 (316)
T ss_pred HHHHHHH------HcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCEEEEcCCCCCChHHH
Confidence 3555566 9999998887753110 0 124899999964321
Q ss_pred hHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEe
Q 019076 92 WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAK 171 (346)
Q Consensus 92 ~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvK 171 (346)
....+.+.++. .+++++|++++++.+.||+.+++.+. ++|+|.+.. +.+.+.+.+.. .+ |+|+|
T Consensus 97 ~~~~~l~~le~-~g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~~~~~--~~-~vVlK 160 (316)
T PRK05246 97 YATYLLERAER-PGTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRAFRAE--HG-DIILK 160 (316)
T ss_pred HHHHHHHHHHh-CCCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHHHHHH--CC-CEEEE
Confidence 22334444444 48999999999999999998776532 689998764 33333333333 33 99999
Q ss_pred cCcCCCCCCceeeEEEeC-hhhh-------hcc-CCCeEEEecccCC-CeEEEEEEECCEEEE--EEeecCCCcccchhh
Q 019076 172 PLVVDGSAKSHELFLAYD-RFSL-------SEL-EPPMLLQEFVNHG-GILFKIYIIGETIKV--VRRFSLPNVSKRELA 239 (346)
Q Consensus 172 P~~a~GS~~sh~m~lv~~-~~~L-------~~l-~~p~v~QEfI~h~-G~~~KV~VvG~~v~~--~~R~Slp~~~~~~~~ 239 (346)
|+. |+ ++.++.++.. ..++ ... ..|+++|+||+.. +.|+||+|+|+++.+ +.|.+.. ++|+
T Consensus 161 P~~--G~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~~R~~~~----~~~r 233 (316)
T PRK05246 161 PLD--GM-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYALARIPAG----GETR 233 (316)
T ss_pred ECC--CC-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhheeEecCCC----CCcc
Confidence 998 55 6788998854 3322 222 4699999999865 679999999999875 4554432 2444
Q ss_pred cccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEecCcCCeEEEEeccCC-C-
Q 019076 240 KVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR---HRLGLRLFNIDMIREHGMRDVFYVIDINYF-P- 314 (346)
Q Consensus 240 ~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~lGl~lfGvDvi~~~~~g~~~~ViDVN~f-P- 314 (346)
+| ++. ++...+ .+..+...++|.+++ +.+|+.++|||++ + . ||+|||.+ |
T Consensus 234 tN--------~~~------Gg~~~~----~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli---~---~-~l~EvN~~~p~ 288 (316)
T PRK05246 234 GN--------LAA------GGRGEA----TPLTERDREICAAIGPELKERGLIFVGIDVI---G---D-YLTEINVTSPT 288 (316)
T ss_pred cC--------ccC------CceEec----cCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe---C---C-EEEEEeCCCch
Confidence 33 222 222222 112355789998888 5779999999999 2 2 59999976 6
Q ss_pred CCCCCccc-----HHHHHHHHHHHHH
Q 019076 315 GYGKMPDY-----EHIFTDFLLSLEQ 335 (346)
Q Consensus 315 g~~gv~~~-----~~~l~~~l~~~i~ 335 (346)
||.+++.. +..+.+++.+.+.
T Consensus 289 ~~~~~~~~tg~~ia~~i~~~~~~~~~ 314 (316)
T PRK05246 289 GIREIERLTGVDIAGMLWDAIEAKLA 314 (316)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 88888654 5667777666554
No 13
>PRK12458 glutathione synthetase; Provisional
Probab=99.87 E-value=9.7e-21 Score=184.86 Aligned_cols=215 Identities=17% Similarity=0.227 Sum_probs=144.6
Q ss_pred CccEEEEcccch---hhHHHHHH------HHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEc
Q 019076 79 PFDVVLHKLSGM---EWCKIIED------YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT 149 (346)
Q Consensus 79 ~fDvilhK~t~~---~~~~~l~~------y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~ 149 (346)
.||+|++|-... .....+.. ...+..+++++|++++++.+.||..+++ |. .+++|+|++..
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~-l~---------~~~vP~T~v~~ 148 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQS-FP---------EEVRPTTHISR 148 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHh-hc---------cCCCCCEEEeC
Confidence 589999996432 22333332 1223468999999999999999998754 33 15799998774
Q ss_pred cCCCChhhHHHhhCCCC-cEEEecCcCCCCCCceeeEEEeChhh--hhcc------CCCeEEEecccCC-CeEEEEEEEC
Q 019076 150 KDSLSIPDQVFEAGLKL-PLVAKPLVVDGSAKSHELFLAYDRFS--LSEL------EPPMLLQEFVNHG-GILFKIYIIG 219 (346)
Q Consensus 150 ~~~~~~~~~l~~~~l~f-PvVvKP~~a~GS~~sh~m~lv~~~~~--L~~l------~~p~v~QEfI~h~-G~~~KV~VvG 219 (346)
+.+.+.+.+ ...++ |+|+||+. |+ +++++.++.+.+. +..+ ..++++||||+.. +.++||+|+|
T Consensus 149 -~~~~~~~~~--~~~~~~pvVvKPl~--G~-gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~ 222 (338)
T PRK12458 149 -NKEYIREFL--EESPGDKMILKPLQ--GS-GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLN 222 (338)
T ss_pred -CHHHHHHHH--HHcCCCeEEEEECC--CC-CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEEC
Confidence 333333322 23444 59999998 54 6789999986653 3221 4689999999863 6799999999
Q ss_pred CEEE------EEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh---CCcE
Q 019076 220 ETIK------VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL---GLRL 290 (346)
Q Consensus 220 ~~v~------~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l---Gl~l 290 (346)
++++ ++.++.... ++|++| .+. ++...+ .++.+..+++|.++..+| ||.+
T Consensus 223 g~~v~~~g~~~a~~R~~~~---~d~RsN--------~~~------Gg~~~~----~~l~~~~~~ia~~~~~~l~~~GL~~ 281 (338)
T PRK12458 223 GEPLERDGHYAAMRRVPAG---GDVRSN--------VHA------GGSVVK----HTLTKEELELCEAIRPKLVRDGLFF 281 (338)
T ss_pred CEEEeeccceeEEEEecCC---CCeeec--------ccC------CCcccC----cCCCHHHHHHHHHHHHHHhhcCCeE
Confidence 9988 655543221 244432 111 222222 123456899999999988 9999
Q ss_pred eEEEEEEecCcCCeEEEEeccC-CC-CCCCC-----cccHHHHHHHHHHHHHhh
Q 019076 291 FNIDMIREHGMRDVFYVIDINY-FP-GYGKM-----PDYEHIFTDFLLSLEQSK 337 (346)
Q Consensus 291 fGvDvi~~~~~g~~~~ViDVN~-fP-g~~gv-----~~~~~~l~~~l~~~i~~~ 337 (346)
.|||+| + .+|+|||. +| |+.++ .|+...+.+++.+.+..+
T Consensus 282 ~gVDli---~----~~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~~~~~~~ 328 (338)
T PRK12458 282 VGLDIV---G----DKLVEVNVFSPGGLTRINKLNKIDFVEDIIEALERKVQRK 328 (338)
T ss_pred EeEEEE---C----CEEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHHHHHhHH
Confidence 999999 2 15899998 78 55543 345678888888877554
No 14
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.86 E-value=6.4e-20 Score=189.40 Aligned_cols=244 Identities=16% Similarity=0.199 Sum_probs=156.7
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCCCC-CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHH
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSDQG-PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSM 124 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~-~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~ 124 (346)
..+++.|+ ++|++++.+|.+..+-.-+ .-+.++.+ .....++++.++..|.||..+
T Consensus 245 ~~Ii~~a~------~~Gi~~~~~~se~~~~~L~~g~~~~~~~-----------------~s~~~~~s~~ai~~~~DK~~t 301 (547)
T TIGR03103 245 RIIVDEAR------RRGIEVEVLDAEGGLFRLSLGGRSIRCR-----------------ESLSELTSAVAMSLCDDKRLT 301 (547)
T ss_pred HHHHHHHH------HcCCcEEEECCCCCEEEecCCceEEEEE-----------------eccCCCCCHHHHHHhcCHHHH
Confidence 45666777 9999999987554221100 01111111 122367799999999999999
Q ss_pred HHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE-EeChhhhhcc-------
Q 019076 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSEL------- 196 (346)
Q Consensus 125 ~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l-v~~~~~L~~l------- 196 (346)
.++|++ +|||+|++.++. +.+.+.+.. ..++ |+|+||.. |+ ++.+|.+ +.++++|.+.
T Consensus 302 k~lL~~-------aGIpVP~~~~~~-~~~~~~~~~--~~~G-~vVVKP~~--G~-~G~Gv~v~v~~~~eL~~a~~~a~~~ 367 (547)
T TIGR03103 302 RRLVSE-------AGLQVPEQQLAG-NGEAVEAFL--AEHG-AVVVKPVR--GE-QGKGISVDVRTPDDLEAAIAKARQF 367 (547)
T ss_pred HHHHHH-------cCcCCCCEEEEC-CHHHHHHHH--HHhC-CEEEEECC--CC-CCcCeEEecCCHHHHHHHHHHHHhc
Confidence 999996 589999999885 333333322 2355 79999987 54 6899997 8999887642
Q ss_pred CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchh---h-----cc-------cce-----------------
Q 019076 197 EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKREL---A-----KV-------VSV----------------- 244 (346)
Q Consensus 197 ~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~---~-----~~-------~g~----------------- 244 (346)
...+++|+|| .|.++|++|||++++++.++-.+.+-.+.. . .| ++.
T Consensus 368 ~~~vlvEe~i--~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g 445 (547)
T TIGR03103 368 CDRVLLERYV--PGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAG 445 (547)
T ss_pred CCcEEEEEec--cCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcC
Confidence 4589999999 599999999999998755443343211100 0 00 000
Q ss_pred eecccccccc---------cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 245 FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 245 ~~~~~vs~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+++.+|...+ ..+.++.... ++. ...+...++|.++++++||.+.|||+|.++-++..++|||||..||
T Consensus 446 ~~~~~V~~~G~~v~l~~~~Nl~tGg~~~d-vtd-~~~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pg 523 (547)
T TIGR03103 446 LDLDDVLPEGQRLRVRRTANLHTGGTIHD-VTE-QLHPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANERPG 523 (547)
T ss_pred CCccccCCCCCEEEEecCCcccCCCeeEe-ccc-ccCHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCCcc
Confidence 1111111100 0011222111 011 1345689999999999999999999999754444689999999999
Q ss_pred CCCCc--ccHHHHHHHH
Q 019076 316 YGKMP--DYEHIFTDFL 330 (346)
Q Consensus 316 ~~gv~--~~~~~l~~~l 330 (346)
+.+.+ +..+.++|+|
T Consensus 524 l~~h~~~~~~~~~~d~l 540 (547)
T TIGR03103 524 LANHEPQPTAERFIDLL 540 (547)
T ss_pred ccccCCCchHHHHHHHh
Confidence 99664 3344555544
No 15
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.85 E-value=2.5e-19 Score=171.61 Aligned_cols=227 Identities=17% Similarity=0.229 Sum_probs=155.8
Q ss_pred ccccCCcEEEEecCCCCCC----CCCCccEEEEcccchhh-HHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHh
Q 019076 57 THTNKGISFVAIDQNRPLS----DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVAD 130 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~----~q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~ 130 (346)
+.++.|++++.|+.+..+. ....+|++|..+.+... ...++.+.+. -|++++.+ +.++..|+||..+.+.|+
T Consensus 27 al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~-~gip~~G~~~~a~~i~~DK~~~k~~l~- 104 (299)
T PRK14571 27 ALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDF-LGIRYTGSDAFSSMICFDKLLTYRFLK- 104 (299)
T ss_pred HHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHh-
Confidence 3458899999998875432 23579999999866321 1456777765 57999865 899999999998888876
Q ss_pred ccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEE
Q 019076 131 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQ 203 (346)
Q Consensus 131 l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~Q 203 (346)
++|++|++..+.. .. ....++||+|+||..++ +|.+|.++.|.++|... ..++++|
T Consensus 105 -------~~ip~p~~~~~~~-~~------~~~~l~~P~vvKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVE 167 (299)
T PRK14571 105 -------GTVEIPDFVEIKE-FM------KTSPLGYPCVVKPRREG---SSIGVFICESDEEFQHALKEDLPRYGSVIVQ 167 (299)
T ss_pred -------cCCCCCCEEEEec-hh------hhhhcCCCEEEecCCCC---CcCCEEEECCHHHHHHHHHHHHhhCCcEEEE
Confidence 2699999988742 11 23458999999998743 46889999999887542 3579999
Q ss_pred ecccCCCeEEEEEEECCE----EEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHH
Q 019076 204 EFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLER 277 (346)
Q Consensus 204 EfI~h~G~~~KV~VvG~~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~ 277 (346)
|||+ |+++.|.|+|+. +....... + ...+++|......+.. ..+..+++. ..+.+++
T Consensus 168 eyI~--G~E~sv~vl~~~~~~~vl~~~e~~-~---------~~~~~~~~~k~~~g~~~~~~p~~l~~~-----~~~~i~~ 230 (299)
T PRK14571 168 EYIP--GREMTVSILETEKGFEVLPILELR-P---------KRRFYDYVAKYTKGETEFILPAPLNPE-----EERLVKE 230 (299)
T ss_pred cccc--ceEEEEEEEcCCCCeeeeceEEEe-c---------CCCccccccccCCCCeeEEeCCCCCHH-----HHHHHHH
Confidence 9995 999999999763 22221111 1 0112222221111100 011122111 1345889
Q ss_pred HHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 278 LARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 278 lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
+|.++.++||+ ++++||++.+. | ++||+|||..||+.....+
T Consensus 231 ~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~~~s~~ 273 (299)
T PRK14571 231 TALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGLTELSDL 273 (299)
T ss_pred HHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCCCccCHH
Confidence 99999999997 68889999863 3 6999999999999876544
No 16
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.82 E-value=2.8e-18 Score=167.06 Aligned_cols=214 Identities=19% Similarity=0.200 Sum_probs=145.6
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC--
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-- 154 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~-- 154 (346)
.+|+++.=+.+... ...++.+.+. .|++.+-+ +.+...++||..+-+.|++ .+||+|+++.+......
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~a~~l~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLEL-LGIPYVGCGVLASALSMDKILTKRLLAA-------AGIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEeccccchh
Confidence 58999876644211 1346777755 57888754 7899999999999999996 59999999988543221
Q ss_pred hhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEe
Q 019076 155 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRR 227 (346)
Q Consensus 155 ~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R 227 (346)
.... ....++||+|+||..++| |.++.++.+.++|.. ...++++|+||+ |+.+.|.|+|+...
T Consensus 153 ~~~~-~~~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~~~~---- 222 (333)
T PRK01966 153 SLAE-IEAKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGNDPK---- 222 (333)
T ss_pred hHHH-HHHhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECCCCe----
Confidence 1111 234689999999986433 678999999998864 357899999996 89999999996311
Q ss_pred ecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCe
Q 019076 228 FSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDV 304 (346)
Q Consensus 228 ~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~ 304 (346)
.++. +++....++|+|...+..+.. ..++.+++. ..+.++++|.++.++||+ .++.+|++.+. +| +
T Consensus 223 -~~~~---~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g-~ 291 (333)
T PRK01966 223 -ASVP---GEIVKPDDFYDYEAKYLDGSAELIIPADLSEE-----LTEKIRELAIKAFKALGCSGLARVDFFLTE-DG-E 291 (333)
T ss_pred -Eccc---EEEecCCceEcHHHccCCCCceEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CC-C
Confidence 0111 111111235555444322110 112222211 245689999999999998 56679999974 34 6
Q ss_pred EEEEeccCCCCCCCCcc
Q 019076 305 FYVIDINYFPGYGKMPD 321 (346)
Q Consensus 305 ~~ViDVN~fPg~~gv~~ 321 (346)
+||+|||..||++...-
T Consensus 292 ~~vlEiNt~Pg~t~~s~ 308 (333)
T PRK01966 292 IYLNEINTMPGFTPISM 308 (333)
T ss_pred EEEEEeeCCCCCCcccH
Confidence 99999999999986543
No 17
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.82 E-value=9.6e-19 Score=172.41 Aligned_cols=217 Identities=18% Similarity=0.230 Sum_probs=148.3
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeeeChH-HHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC----
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS---- 152 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp~-~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~---- 152 (346)
.+|+++.-+.+... -..+|.+.+. -|++.+.+. .+...|+||..+-+.|++ ++||||++..+....
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~-~giPy~Gs~~~asal~~DK~~tK~~l~~-------~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKV-MDIPCVGAGILGSAISINKYFCKLLLKS-------FNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHH-------cCCCCCCEEEEeccccccc
Confidence 58999988865321 1357777765 689999988 599999999999999996 689999988774321
Q ss_pred -CChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEE
Q 019076 153 -LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKV 224 (346)
Q Consensus 153 -~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v~~ 224 (346)
+...+. ....++||+|+||.. .|| |.||.++.+.++|.. .+..+++||||. |+++.|.|+|+....
T Consensus 159 ~~~~~~~-~~~~lg~PviVKP~~-~Gs--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~~~ 232 (364)
T PRK14570 159 KEGIKKD-IKEVLGYPVIVKPAV-LGS--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNEQIK 232 (364)
T ss_pred hHHHHHH-HHHhcCCCEEEEeCC-CCC--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCCCce
Confidence 111111 234689999999985 344 678999999988765 256799999995 999999999985211
Q ss_pred EEeecCCCcccchhhc-ccceeeccccccc--ccc---cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019076 225 VRRFSLPNVSKRELAK-VVSVFRFPRVSSA--AAS---ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIR 297 (346)
Q Consensus 225 ~~R~Slp~~~~~~~~~-~~g~~~~~~vs~~--~~~---~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~ 297 (346)
+ +|. .+... ...+|+|...+.. +.+ ..++.++++ ..+.++++|.++.++||+. ++.||+++
T Consensus 233 v----~~~---~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e-----~~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 233 I----FTP---GEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTK-----HLLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred E----eee---EEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHH-----HHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 0 111 11111 1134555443321 100 112222211 1357899999999999995 55699999
Q ss_pred ecCcCCeEEEEeccCCCCCCCCccc
Q 019076 298 EHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 298 ~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
+...| ++||+|||..||+.....+
T Consensus 301 ~~~~g-~~yvlEiNt~PG~t~~S~~ 324 (364)
T PRK14570 301 EKDTG-LIYLNEINTIPGFTDISMF 324 (364)
T ss_pred ECCCC-cEEEEEeeCCCCCCcccHH
Confidence 74223 6999999999999876444
No 18
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.82 E-value=2.3e-18 Score=165.04 Aligned_cols=227 Identities=16% Similarity=0.181 Sum_probs=153.9
Q ss_pred ccCCcEEEEecCCC-CCC---CCCCccEEEEcccchhh-HHHHHHHHHhCCCeeeeC-hHHHHHHhcCHHHHHHHHHhcc
Q 019076 59 TNKGISFVAIDQNR-PLS---DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLN 132 (346)
Q Consensus 59 ~~~Gi~~v~id~~~-~l~---~q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VID-p~~ai~~l~dR~~~~~~L~~l~ 132 (346)
++.|++++.+|.+. .+. ...++|+++.=+.+... ...++...+. -|++++. ++.++..|+||..+-+.|++
T Consensus 32 ~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~-~gip~~Gs~~~a~~l~~DK~~~k~~l~~-- 108 (296)
T PRK14569 32 ISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEM-LEIKHTSSSMKSSVITMDKMISKEILMH-- 108 (296)
T ss_pred HHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHHCHHHHHHHHHH--
Confidence 47899999999863 211 13468988875544221 2456677665 4677764 56999999999999999986
Q ss_pred ccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc------CCCeEEEecc
Q 019076 133 LSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------EPPMLLQEFV 206 (346)
Q Consensus 133 ~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l------~~p~v~QEfI 206 (346)
++||||++..+.. .. . ....++||+|+||..+ | .|.++.+|.+.++|... ..++++||||
T Consensus 109 -----~gIptp~~~~~~~-~~---~--~~~~~~~P~vVKP~~g-g--ss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI 174 (296)
T PRK14569 109 -----HRMPTPMAKFLTD-KL---V--AEDEISFPVAVKPSSG-G--SSIATFKVKSIQELKHAYEEASKYGEVMIEQWV 174 (296)
T ss_pred -----CCCCCCCeEEEch-hh---h--hHhhcCCCEEEEeCCC-C--CCcCeEEcCCHHHHHHHHHHHHhcCCEEEEccc
Confidence 6999999987742 11 1 2356899999999863 3 36899999999988642 2479999999
Q ss_pred cCCCeEEEEEEECCEEE-EEEeecCCCcccchhhcccceeecccccccccc-cCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 019076 207 NHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS-ADDADLDPGIAELPPRPLLERLARELRH 284 (346)
Q Consensus 207 ~h~G~~~KV~VvG~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~-~~~~~~~~~~~~~p~~~~~~~lA~~l~~ 284 (346)
.|++|.|.|+|+.+. .+...+.. .+++|.......+. ..++.+.+ .....++++|.++.+
T Consensus 175 --~G~E~tv~vl~~~~~~~~~i~~~~-----------~~~~~~~k~~~~~~~~~P~~l~~-----~~~~~i~~~a~~~~~ 236 (296)
T PRK14569 175 --TGKEITVAIVNDEVYSSVWIEPQN-----------EFYDYESKYSGKSIYHSPSGLCE-----QKELEVRQLAKKAYD 236 (296)
T ss_pred --ccEEEEEEEECCcCcceEEEecCC-----------CcCChhhccCCCcEEEeCCCCCH-----HHHHHHHHHHHHHHH
Confidence 489999999998742 22222211 11222221111100 01112211 124568999999999
Q ss_pred HhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 285 RLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 285 ~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
+||+. +++||++.+. +| ++||+|||..||++.-..+
T Consensus 237 ~Lg~~G~~rvD~~~~~-~g-~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 237 LLGCSGHARVDFIYDD-RG-NFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred HhCCceEEEEEEEEcC-CC-CEEEEEeeCCCCCCCcCHH
Confidence 99975 6679999874 33 6999999999999865443
No 19
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.81 E-value=1.2e-18 Score=185.31 Aligned_cols=193 Identities=16% Similarity=0.221 Sum_probs=132.2
Q ss_pred eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE-E
Q 019076 109 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-A 187 (346)
Q Consensus 109 IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l-v 187 (346)
-++..+++.+.||..+.++|++ .+||+|++..+. +.+++.+ ....++||+|+||.. |+ ++.+|.+ +
T Consensus 203 ~~s~~a~~i~~DK~~tk~lL~~-------~GIPvP~~~~v~-s~~~a~~--~a~~iG~PvVVKP~~--G~-~G~GV~~~v 269 (727)
T PRK14016 203 QTSAIAVDIACDKELTKRLLAA-------AGVPVPEGRVVT-SAEDAWE--AAEEIGYPVVVKPLD--GN-HGRGVTVNI 269 (727)
T ss_pred CCcHHHHHHhCCHHHHHHHHHH-------CCcCCCCeeEeC-CHHHHHH--HHHHcCCCEEEEECC--CC-CCCceEEec
Confidence 6788999999999999999996 589999999774 3333323 234689999999986 54 6789998 8
Q ss_pred eChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhh------c--cc----c-----
Q 019076 188 YDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA------K--VV----S----- 243 (346)
Q Consensus 188 ~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~------~--~~----g----- 243 (346)
.++++|.+. ..++++|+||+ |.+|||+|+|++++++.|+-.+.+..+... . |. |
T Consensus 270 ~~~~el~~a~~~a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~ 347 (727)
T PRK14016 270 TTREEIEAAYAVASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEK 347 (727)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccC
Confidence 999887642 46899999995 999999999999998777755544211000 0 00 0
Q ss_pred ------------------eeecccccccc---------cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEE
Q 019076 244 ------------------VFRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMI 296 (346)
Q Consensus 244 ------------------~~~~~~vs~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi 296 (346)
-++..+|...+ ..+.++.......++ .+...++|.++++++|++++|||++
T Consensus 348 ~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i--~~~~~~~a~~aa~~~gl~~~GvDi~ 425 (727)
T PRK14016 348 PLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEV--HPENAAIAERAAKIIGLDIAGVDVV 425 (727)
T ss_pred cccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEeccccc--CHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 01111111111 011111111100112 3558999999999999999999999
Q ss_pred EecC----cCCeEEEEeccCCCCCCC
Q 019076 297 REHG----MRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 297 ~~~~----~g~~~~ViDVN~fPg~~g 318 (346)
.++- ...++.|||||..||+..
T Consensus 426 ~~di~~p~~~~~~~iiEvN~sPgi~~ 451 (727)
T PRK14016 426 CEDISKPLEEQGGAIVEVNAAPGLRM 451 (727)
T ss_pred ecCcccccccCCcEEEEEcCCcchhh
Confidence 8641 012478999999999985
No 20
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.80 E-value=5.5e-18 Score=180.29 Aligned_cols=230 Identities=13% Similarity=0.155 Sum_probs=147.8
Q ss_pred hhcccccCCcEEEEecCCCCCCCCC---CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHh
Q 019076 54 YILTHTNKGISFVAIDQNRPLSDQG---PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVAD 130 (346)
Q Consensus 54 ~~~~~~~~Gi~~v~id~~~~l~~q~---~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~ 130 (346)
.++++.++||.+..+|.+..+...+ ..+.++. -.....|+..+...+.||..|.++|++
T Consensus 437 li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~------------------~~~t~~~s~~s~~~~~DK~~tk~lL~~ 498 (752)
T PRK02471 437 LLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKN------------------GNMTSKDNYISPLIMENKVVTKKILAE 498 (752)
T ss_pred HHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEe------------------ccccCCCHHHHHHHhhCHHHHHHHHHH
Confidence 3334449999999999875443211 1222211 124667889999999999999999996
Q ss_pred ccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC---hhhhhc-------cCCCe
Q 019076 131 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD---RFSLSE-------LEPPM 200 (346)
Q Consensus 131 l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~---~~~L~~-------l~~p~ 200 (346)
+|||+|++.++. +.+.+...+ ..-++||+|+||.. |+ +|.++.++.+ .+++.+ ....+
T Consensus 499 -------~GIpvP~~~~~~-~~e~a~~~~-~~~~g~PvVVKP~~--g~-~G~GV~~~~~~~~~eel~~A~~~a~~~~~~v 566 (752)
T PRK02471 499 -------AGFPVPAGDEFT-SLEEALADY-SLFADKAIVVKPKS--TN-FGLGISIFKEPASLEDYEKALEIAFREDSSV 566 (752)
T ss_pred -------CCcCCCCEEEEc-CHHHHHHHH-HHhcCCCEEEEECC--CC-CcCCeEEecCcCCHHHHHHHHHHHHhcCCcE
Confidence 699999999885 332222221 22248999999997 44 6789988754 455433 24679
Q ss_pred EEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhc--------cc----ce-----------------------e
Q 019076 201 LLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAK--------VV----SV-----------------------F 245 (346)
Q Consensus 201 v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~--------~~----g~-----------------------~ 245 (346)
++|||| .|++|+|+|||++++++.++..+++..+...+ |. |. +
T Consensus 567 lVEEfI--~G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~ 644 (752)
T PRK02471 567 LVEEFI--VGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGL 644 (752)
T ss_pred EEEecc--cCCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCC
Confidence 999999 49999999999999876555546554322111 11 00 1
Q ss_pred eccccccccc---------ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecC------cCCeEEEEec
Q 019076 246 RFPRVSSAAA---------SADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHG------MRDVFYVIDI 310 (346)
Q Consensus 246 ~~~~vs~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~------~g~~~~ViDV 310 (346)
++.+|...+. .+.++... ..+.. ..+...++|.++++++|+.++||||+.++- .+.++.||||
T Consensus 645 ~l~sVp~~Ge~v~L~~~~NlstGg~~~-dvtd~-ih~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~~~~~~~IiEv 722 (752)
T PRK02471 645 TPDSIPKKGEIVYLRENSNISTGGDSI-DMTDD-MDDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASPEHPNYGIIEL 722 (752)
T ss_pred CccccCCCCCEEEecCCCccCCCCeeE-ecccc-cCHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccccCCCeEEEEe
Confidence 1111111110 00111110 11111 245589999999999999999999998641 1115789999
Q ss_pred cCCCCCC
Q 019076 311 NYFPGYG 317 (346)
Q Consensus 311 N~fPg~~ 317 (346)
|..||+.
T Consensus 723 N~~P~l~ 729 (752)
T PRK02471 723 NFNPAMY 729 (752)
T ss_pred cCCCchh
Confidence 9999975
No 21
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.80 E-value=8.9e-18 Score=164.47 Aligned_cols=215 Identities=17% Similarity=0.180 Sum_probs=141.7
Q ss_pred CccEEE---EcccchhhHHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC-
Q 019076 79 PFDVVL---HKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL- 153 (346)
Q Consensus 79 ~fDvil---hK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~- 153 (346)
.+|+++ |.-.++. ..+|.+.+. -|++++ .++.++..|+||..|.+.|++ ++|++|+++.+.+...
T Consensus 88 ~~d~~f~~~hg~~gEd--g~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~-------~GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGED--GRIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQ-------SGQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCC--cHHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEEccccc
Confidence 467754 4433333 247777764 578887 458899999999999999986 6899999998853221
Q ss_pred -ChhhHH-HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECC----
Q 019076 154 -SIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGE---- 220 (346)
Q Consensus 154 -~~~~~l-~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~---- 220 (346)
...+.. ....++||+|+||.. .| .|.++.++.+.++|.+. ..++++|||| .|++|.|.|+|+
T Consensus 158 ~~~~~~~~~~~~l~~PvvVKP~~-gg--sS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI--~G~E~sv~vi~~~~~g 232 (347)
T PRK14572 158 NSPRKTLLKLESLGFPQFLKPVE-GG--SSVSTYKITNAEQLMTLLALIFESDSKVMSQSFL--SGTEVSCGVLERYRGG 232 (347)
T ss_pred cChHHHHHHHHhcCCCEEEecCC-CC--CCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCc--ccEEEEEEEEeCccCC
Confidence 111111 124689999999986 33 36899999999988652 4679999999 489999999973
Q ss_pred EEEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019076 221 TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIR 297 (346)
Q Consensus 221 ~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~ 297 (346)
++... .+|-. +.....++|+|...+..+.. ..++.+++. ..+.++++|.++.++||+. +.++|++.
T Consensus 233 ~~~~~---~l~~~---ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~~Lg~~G~~rvD~~~ 301 (347)
T PRK14572 233 KRNPI---ALPAT---EIVPGGEFFDFESKYKQGGSEEITPARISDQ-----EMKRVQELAIRAHESLGCKGYSRTDFII 301 (347)
T ss_pred CCCce---ecccE---EEecCCCccCHHHccCCCCeEEEECCCCCHH-----HHHHHHHHHHHHHHHhCCcceeEEEEEE
Confidence 21100 01100 11111234454443322111 012222211 2346899999999999987 55799999
Q ss_pred ecCcCCeEEEEeccCCCCCCCCccc
Q 019076 298 EHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 298 ~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
+. | .+||+|||..||+.....+
T Consensus 302 ~~--~-~~~vlEiNt~PG~t~~S~~ 323 (347)
T PRK14572 302 VD--G-EPHILETNTLPGMTETSLI 323 (347)
T ss_pred EC--C-cEEEEeeeCCCCCCcccHH
Confidence 63 2 6999999999999876444
No 22
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.79 E-value=1e-17 Score=163.80 Aligned_cols=212 Identities=19% Similarity=0.249 Sum_probs=144.2
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|+++.-+.+... ...+|.+.+. .|++.+ .++.+...|+||..+.+.|++ ++|++|+++++.... ..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~-~~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKN-------AGIATPAFWTVTADE-RP- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------cCcCcCCEEEEECCc-hh-
Confidence 47988877765221 2457777764 678877 567899999999999999986 589999999885322 11
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEE--EE--E
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETI--KV--V 225 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v--~~--~ 225 (346)
....++||+|+||..+ || |.++.++.+.++|.. .+..+++||||+ |+.+.|.|+|+.- .+ +
T Consensus 160 ---~~~~l~~P~iVKP~~~-gs--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~~~~~~~~~ 231 (343)
T PRK14568 160 ---DAATLTYPVFVKPARS-GS--SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNGADLVVGEV 231 (343)
T ss_pred ---hhhhcCCCEEEEeCCC-CC--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCCCCcceecc
Confidence 2346899999999863 33 689999999999864 356899999995 8999999998741 11 1
Q ss_pred EeecCCCcccchhhcccceeeccccccccc-ccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCC-cEeEEEEEEecCc
Q 019076 226 RRFSLPNVSKRELAKVVSVFRFPRVSSAAA-SADDADLDPGIAELP--PRPLLERLARELRHRLGL-RLFNIDMIREHGM 301 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~-~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~ 301 (346)
.+.. ...++|+|+....... .......-| .+++ ..+.++++|.++.++||+ .++.+|++.+. +
T Consensus 232 ~~i~----------~~~~~~~~~~k~~~~~g~~~~~~~~P--a~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~ 298 (343)
T PRK14568 232 DQIR----------LSHGFFRIHQENEPEKGSENSTIIVP--ADISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-D 298 (343)
T ss_pred eEEe----------cCCCccchhhhhccccCCCCeeEEeC--CCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-C
Confidence 1111 1123444443221100 000000111 1122 235689999999999999 67779999984 3
Q ss_pred CCeEEEEeccCCCCCCCCccc
Q 019076 302 RDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 302 g~~~~ViDVN~fPg~~gv~~~ 322 (346)
| .+||+|||..||+.....+
T Consensus 299 g-~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 299 G-TVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred C-CEEEEEeeCCCCCCccCHH
Confidence 4 6899999999999865433
No 23
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.77 E-value=3.3e-18 Score=185.05 Aligned_cols=194 Identities=15% Similarity=0.206 Sum_probs=130.5
Q ss_pred eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE-E
Q 019076 109 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-A 187 (346)
Q Consensus 109 IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l-v 187 (346)
.|+..++..+.||..+.++|.+ ++||+|++.++. +.+.+.+ ....++||+|+||.. |+ .+.++.+ +
T Consensus 202 ~~s~ia~~ia~DK~~tk~lL~~-------~GIpvP~~~~~~-s~~ea~~--~~~~ig~PvVVKP~~--g~-~G~GV~l~v 268 (864)
T TIGR02068 202 RTSAIAVEIACDKDLTKEILSD-------AGVPVPEGTVVQ-SAEDAWE--AAQDLGYPVVIKPYD--GN-HGRGVTINI 268 (864)
T ss_pred CCcHHHHHHHcCHHHHHHHHHH-------cCcCCCCEEEEC-CHHHHHH--HHHHcCCCEEEEECC--CC-CccCEEEEe
Confidence 4678899999999999999996 699999999885 3322322 234589999999997 44 5788998 8
Q ss_pred eChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhh------c--cc----c-----
Q 019076 188 YDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA------K--VV----S----- 243 (346)
Q Consensus 188 ~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~------~--~~----g----- 243 (346)
.+++++.+. ..++++|+||+ |++|+|+|+|++++++.++-.+++..+... . |. |
T Consensus 269 ~s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~ 346 (864)
T TIGR02068 269 LTRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDK 346 (864)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccC
Confidence 999887642 46899999995 899999999999987766655554321110 0 00 0
Q ss_pred ------------------eeeccccccccc---------ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEE
Q 019076 244 ------------------VFRFPRVSSAAA---------SADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMI 296 (346)
Q Consensus 244 ------------------~~~~~~vs~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi 296 (346)
-++.++|...+. .+.++.......++ .+...++|.++++++||+++|||++
T Consensus 347 ~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i--~~~~~~~a~~aa~~~gl~i~gvD~i 424 (864)
T TIGR02068 347 PLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEI--HPENAATAVRAAKIIGLDIAGVDIV 424 (864)
T ss_pred CccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEeccccc--CHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 001111111110 00111110000112 3458999999999999999999999
Q ss_pred EecCc----CCeEEEEeccCCCCCCCC
Q 019076 297 REHGM----RDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 297 ~~~~~----g~~~~ViDVN~fPg~~gv 319 (346)
.++-+ +.++.|||||..||+...
T Consensus 425 ~~di~~~~~~~~~~iiEvN~~p~~~~h 451 (864)
T TIGR02068 425 TEDISRPLRDTDGAIVEVNAAPGLRMH 451 (864)
T ss_pred ecCCCCCccccCcEEEEEcCCcchhhc
Confidence 85311 124689999999998743
No 24
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.77 E-value=1.4e-18 Score=158.30 Aligned_cols=165 Identities=20% Similarity=0.309 Sum_probs=109.4
Q ss_pred CccccCcEEEEccCCCChhh-HHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCC
Q 019076 138 GKVRVPRQMVITKDSLSIPD-QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHG 209 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~-~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~ 209 (346)
.||+||+++++......... .-....++||+|+||. ..|| |.|+.+|++.++|.. ++.++++|||| +
T Consensus 5 ~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~-~~Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~ 79 (203)
T PF07478_consen 5 AGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPA-SEGS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--S 79 (203)
T ss_dssp TT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEES-STST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----S
T ss_pred cCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEEC-CCCc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--c
Confidence 59999999999643221100 0124579999999998 5565 788999999998865 35789999999 7
Q ss_pred CeEEEEEEECCE---EEEEEeecCCCcccchhhcccceeeccccccc--c--cccCCCCCCCCCCCCCChHHHHHHHHHH
Q 019076 210 GILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA--A--ASADDADLDPGIAELPPRPLLERLAREL 282 (346)
Q Consensus 210 G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~--~--~~~~~~~~~~~~~~~p~~~~~~~lA~~l 282 (346)
|++|.|.|+|+. +.-... .....++|+|...... . ....++.+++. ..+.++++|.++
T Consensus 80 G~E~tv~vl~~~~~~~~~~~e----------i~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~-----~~~~i~~~a~~a 144 (203)
T PF07478_consen 80 GREFTVGVLGNGEPRVLPPVE----------IVFPSEFYDYEAKYQPADSETEYIIPADLSEE-----LQEKIKEIAKKA 144 (203)
T ss_dssp SEEEEEEEEESSSTEEEEEEE----------EEESSSEEEHHHHHSGCCSCEEEESS-SS-HH-----HHHHHHHHHHHH
T ss_pred ccceEEEEEecCCcccCceEE----------EEcCCCceehhheeccCCCceEEEecCCCCHH-----HHHHHHHHHHHH
Confidence 999999999944 332222 2222356666665432 1 11122233221 246789999999
Q ss_pred HHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCCCCcccHH
Q 019076 283 RHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYGKMPDYEH 324 (346)
Q Consensus 283 ~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~ 324 (346)
.++||+.-++ ||+..+. +| ++|++|||..||+.....++.
T Consensus 145 ~~~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt~~S~~p~ 185 (203)
T PF07478_consen 145 FKALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLTPTSLFPR 185 (203)
T ss_dssp HHHTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-STTSHHHH
T ss_pred HHHHcCCCceeEEEEecc-CC-ceEEEeccCcccccCCCHHHH
Confidence 9999998887 9999975 34 799999999999987655543
No 25
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.74 E-value=1.1e-16 Score=154.41 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=122.2
Q ss_pred eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCC-cEEEecCcCCCCCCceeeEEE
Q 019076 109 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGSAKSHELFLA 187 (346)
Q Consensus 109 IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~f-PvVvKP~~a~GS~~sh~m~lv 187 (346)
.|+.+..-.|.||+.+.++|++ ++||+|+|.++.....+. +.+...--++ |+|+||+. || +++++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~~-~~l~~~~~~~~~VVVKPl~--Gs-~GrGI~~i 94 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQA-------AGITVPELYGVIHNQAEV-KTIHNIVKDHPDFVIKPAQ--GS-GGKGILVI 94 (317)
T ss_pred cCCchhccccccHHHHHHHHHH-------cCCCCCCEEEecCchhhH-HHHHHHHccCCCEEEEECC--CC-CccCeEEE
Confidence 4777888899999999999986 699999999885433232 2222222256 69999998 77 88999999
Q ss_pred eChhhhh--------------------------ccCCC--eEEEecc--cCC---------CeEEEEEEECCEEEE-EEe
Q 019076 188 YDRFSLS--------------------------ELEPP--MLLQEFV--NHG---------GILFKIYIIGETIKV-VRR 227 (346)
Q Consensus 188 ~~~~~L~--------------------------~l~~p--~v~QEfI--~h~---------G~~~KV~VvG~~v~~-~~R 227 (346)
.+.++.. .+..+ .++|||+ +|+ ..++||+|+|+++.+ +.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R 174 (317)
T TIGR02291 95 TSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMR 174 (317)
T ss_pred EeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEE
Confidence 7753311 12222 5667886 332 269999999999875 455
Q ss_pred ecCC--Ccccchhhccccee---eccc--ccccccccCCCCCCCC------CCCCCChHHHHHHHHHHHHHhCCcEeEEE
Q 019076 228 FSLP--NVSKRELAKVVSVF---RFPR--VSSAAASADDADLDPG------IAELPPRPLLERLARELRHRLGLRLFNID 294 (346)
Q Consensus 228 ~Slp--~~~~~~~~~~~g~~---~~~~--vs~~~~~~~~~~~~~~------~~~~p~~~~~~~lA~~l~~~lGl~lfGvD 294 (346)
.+.. +|..|- ..+|.. +-.+ +...+.....-...|. ..+.|..+++.++|.++.+++|+.++|+|
T Consensus 175 ~~~~~~~~~tN~--~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~GvD 252 (317)
T TIGR02291 175 LPTRASDGKANL--HQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGVD 252 (317)
T ss_pred ccCccCCccccc--ccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4432 232211 001111 0000 0000000000001111 12234456789999999999999999999
Q ss_pred EEEecCcCCeEEEEeccCCCCCC
Q 019076 295 MIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 295 vi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
++++.+ ++++|+|||..|||.
T Consensus 253 ii~~~~--~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 253 MVLDKE--EGPLVLELNARPGLA 273 (317)
T ss_pred EEEeCC--CCEEEEEeCCCCCCC
Confidence 999743 269999999999998
No 26
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.71 E-value=5.6e-16 Score=163.43 Aligned_cols=195 Identities=13% Similarity=0.200 Sum_probs=128.4
Q ss_pred eeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCC-CCcEEEecCcCCCCCCceee
Q 019076 106 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVVDGSAKSHEL 184 (346)
Q Consensus 106 v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l-~fPvVvKP~~a~GS~~sh~m 184 (346)
+.-.|+..+...|.||..+-++|.+ +|||||++.++.+ .....+. ...+ +||+|+||.. |+ .|.|+
T Consensus 461 ~ts~tS~ia~~i~~DK~~TK~iL~~-------aGIPVP~g~~~~~-~~~a~~~--~~~~~g~PVVVKP~~--g~-~G~GV 527 (737)
T TIGR01435 461 MTSKDNYVSPLIMENKVVTKKVLAE-------AGFRVPFGDEFSS-QALALEA--FSLFENKAIVVKPKS--TN-YGLGI 527 (737)
T ss_pred ecCCccHHHHHHhcCHHHHHHHHHH-------cCcCCCCEEEECC-HHHHHHH--HHHhcCCCEEEeeCC--CC-CcCCe
Confidence 4556888999999999999999996 6999999998853 2222121 2234 7999999986 43 57889
Q ss_pred EEEeC---hhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhc--------cc----
Q 019076 185 FLAYD---RFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAK--------VV---- 242 (346)
Q Consensus 185 ~lv~~---~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~--------~~---- 242 (346)
.++.+ .+++.+ ....+++||||. |++|+|+|||+++.++.++-.+++..+...+ |.
T Consensus 528 si~~~~~~~eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~R 605 (737)
T TIGR01435 528 TIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLR 605 (737)
T ss_pred EEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCccc
Confidence 99877 455432 245799999994 9999999999999876666556664332111 10
Q ss_pred ce----------------------eeccccccccc---------ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEe
Q 019076 243 SV----------------------FRFPRVSSAAA---------SADDADLDPGIAELPPRPLLERLARELRHRLGLRLF 291 (346)
Q Consensus 243 g~----------------------~~~~~vs~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lf 291 (346)
|. +++.+|...+. .+.+++.. +++. ...+..+++|.++++++|+.++
T Consensus 606 g~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~i-DvTd-~ihp~~~~lA~~aa~algl~i~ 683 (737)
T TIGR01435 606 GTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSI-DMTD-EMDDSYKQIAIRIATAVGAAIC 683 (737)
T ss_pred CCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceE-eccc-ccCHHHHHHHHHHHHhcCCCEE
Confidence 00 01111111100 00111110 1111 1235579999999999999999
Q ss_pred EEEEEEecCcC------CeEEEEeccCCCCCC
Q 019076 292 NIDMIREHGMR------DVFYVIDINYFPGYG 317 (346)
Q Consensus 292 GvDvi~~~~~g------~~~~ViDVN~fPg~~ 317 (346)
|||+|.++-+. ..+.|||||..||+.
T Consensus 684 GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~ 715 (737)
T TIGR01435 684 GVDLIIPDETIPDTDKHAIWGVIEANFNPAMH 715 (737)
T ss_pred EEEEEecCCCCCccccccceEEEEEcCCcchh
Confidence 99999864211 237899999999965
No 27
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.70 E-value=3.2e-15 Score=161.21 Aligned_cols=240 Identities=15% Similarity=0.088 Sum_probs=159.4
Q ss_pred ccCCcEEEEecCCCC--C--C---------------------C-CCCccEEEEcccchhh-HHHHHHHHHhCCCeeeeC-
Q 019076 59 TNKGISFVAIDQNRP--L--S---------------------D-QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD- 110 (346)
Q Consensus 59 ~~~Gi~~v~id~~~~--l--~---------------------~-q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VID- 110 (346)
.+.|+++++||.++. . . . ...+|+++.=+.+... -..+|.+.+. -|++.+-
T Consensus 480 ~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~~le~-~gipy~Gs 558 (809)
T PRK14573 480 SPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVVLPILHGPFGEDGTMQGFLEI-IGKPYTGP 558 (809)
T ss_pred cccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEEEEcCCCCCCCChHHHHHHHH-cCCCeeCC
Confidence 567999998887652 0 0 0 0247888877655311 1457888765 5677654
Q ss_pred hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC--CChhhH--HHhhCCCCcEEEecCcCCCCCCceeeEE
Q 019076 111 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS--LSIPDQ--VFEAGLKLPLVAKPLVVDGSAKSHELFL 186 (346)
Q Consensus 111 p~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~--~~~~~~--l~~~~l~fPvVvKP~~a~GS~~sh~m~l 186 (346)
++.+...++||..+-+.|++ .||+||++..+.... ...... -....++||+|+||.. .|| |.|+.+
T Consensus 559 ~~~asal~~DK~~~K~~l~~-------~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~-~Gs--S~Gv~~ 628 (809)
T PRK14573 559 SLAFSAIAMDKVLTKRFASD-------VGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAH-LGS--SIGVFE 628 (809)
T ss_pred CHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEechhcccChHHHHHHHHHhcCCCEEEeeCC-CCC--CCCEEE
Confidence 77889999999999999986 589999998885311 111110 1235699999999985 444 679999
Q ss_pred EeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeeccccccc-cc---
Q 019076 187 AYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA-AA--- 255 (346)
Q Consensus 187 v~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~-~~--- 255 (346)
|.++++|.+ .+.++++||||. +|+.+-|.|+|+.-.... .+ +. .+.....++|+|...+.. +.
T Consensus 629 v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~~~~~~-~~-~~---~e~~~~~~f~dy~~Ky~~~g~~~~ 702 (809)
T PRK14573 629 VHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDGSSAYV-IA-GP---HERRGSGGFIDYQEKYGLSGKSSA 702 (809)
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCCCCceE-ec-cc---eEEccCCCeeCchhcccCCCCCce
Confidence 999998764 256899999986 589999999998621100 01 11 011112246666554421 10
Q ss_pred -ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 256 -SADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 256 -~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
...++.+++. ..+.++++|.++.++||+.-++ ||++.+.+ | .+||+|||..||+.....+
T Consensus 703 ~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~-g-~~yv~EiNt~PG~t~~s~~ 764 (809)
T PRK14573 703 QIVFDLDLSKE-----SQEQVLELAERIYRLLQGKGSCRIDFFLDEE-G-NFWLSEMNPIPGMTEASPF 764 (809)
T ss_pred EEecCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEcCC-C-CEEEEEeeCCCCCCcccHH
Confidence 0012222211 2457899999999999998776 99999753 3 6999999999999875333
No 28
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.65 E-value=1.4e-14 Score=142.70 Aligned_cols=221 Identities=12% Similarity=0.169 Sum_probs=140.9
Q ss_pred cCCcEEEEecCCCCCCC-----------------------CCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHH
Q 019076 60 NKGISFVAIDQNRPLSD-----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 116 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~~-----------------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~ 116 (346)
++|+.++.+|.+..-.. ...+|+|+.=... .....+..+ ++ .|+++..++++++
T Consensus 20 ~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~-v~~~~~~~l-~~-~g~~~~~~~~~~~ 96 (380)
T TIGR01142 20 RLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEA-IATDALFEL-EK-EGYFVVPNARATK 96 (380)
T ss_pred HcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCc-cCHHHHHHH-Hh-cCCeeCCCHHHHH
Confidence 88999998888642110 1135555542211 112223333 33 3577788999999
Q ss_pred HhcCHHHHHHHH-HhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc
Q 019076 117 HLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE 195 (346)
Q Consensus 117 ~l~dR~~~~~~L-~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~ 195 (346)
.+.||..+.+.+ .+ ++|++|++..+.+ .+++.+ ....++||+|+||.. |+ +|.++.++.++++|..
T Consensus 97 ~~~dK~~~~~~~~~~-------~gip~p~~~~~~~-~~~~~~--~~~~~g~P~VvKP~~--g~-~s~gv~~v~~~~el~~ 163 (380)
T TIGR01142 97 LTMNREGIRRLAAEE-------LGLPTSRYMFADS-LDELRE--AVEKIGYPCVVKPVM--SS-SGKGQSVVRGPEDIEK 163 (380)
T ss_pred HhhCHHHHHHHHHHH-------CCCCCCCceEeCC-HHHHHH--HHHHcCCCEEEEECC--Cc-CCCCeEEECCHHHHHH
Confidence 999999888875 54 5899999998853 222322 234689999999986 44 5789999999998754
Q ss_pred c-----------CCCeEEEecccCCCeEEEEEEE---CCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCC
Q 019076 196 L-----------EPPMLLQEFVNHGGILFKIYII---GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD 261 (346)
Q Consensus 196 l-----------~~p~v~QEfI~h~G~~~KV~Vv---G~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~ 261 (346)
. ..++++||||+ ++..+.|.++ ++++... ....+.. ..+.+.. ...+..
T Consensus 164 ~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~~~~~~~g~~~~~--~~~~~~~------~~~~~~~--------~~~p~~ 226 (380)
T TIGR01142 164 AWEYAQEGARGGAGRVIVEEFID-FDYEITLLTVRHVDGNTTFC--APIGHRQ------IDGDYHE--------SWQPQE 226 (380)
T ss_pred HHHHHHhhccCCCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcceEE------eCCeeEE--------EECCCC
Confidence 2 35799999996 3678888777 3332221 1111110 0111100 000112
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCCcc
Q 019076 262 LDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPD 321 (346)
Q Consensus 262 ~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~ 321 (346)
+++ ...+.++++|.++.++||. .++++|++.+.+ ++||+|||.-||-.+...
T Consensus 227 l~~-----~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~---~~~viEinpR~~~~~~~~ 279 (380)
T TIGR01142 227 MSE-----KALEEAQRIAKRITDALGGYGLFGVELFVKGD---EVIFSEVSPRPHDTGMVT 279 (380)
T ss_pred CCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEECC---cEEEEEeecCCCCCceEE
Confidence 211 1135678999999999998 677899998742 599999999999776554
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.64 E-value=5.1e-14 Score=137.89 Aligned_cols=178 Identities=16% Similarity=0.213 Sum_probs=122.1
Q ss_pred CeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceee
Q 019076 105 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 184 (346)
Q Consensus 105 ~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m 184 (346)
|+++..++++++.++||..+-+.|.+ ++|++|++..+.+ .+++.+ ....++||+|+||.. |+.+|.++
T Consensus 83 g~~~~p~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~-~~~~~~--~~~~~g~P~vvKp~~--~g~~g~Gv 150 (352)
T TIGR01161 83 GVKLFPSPDALAIIQDRLTQKQFLQK-------LGLPVPPFLVIKD-EEELDA--ALQELGFPVVLKART--GGYDGRGQ 150 (352)
T ss_pred CCeECCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCccEeCC-HHHHHH--HHHHcCCCEEEEeCC--CCCCCCCE
Confidence 56788999999999999999999986 5899999998853 222322 224689999999986 32257899
Q ss_pred EEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEEC---CEEEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 185 FLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIG---ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 185 ~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG---~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
.++.+.+++... ..++++||||+ .|..+.|.++. +++.++.. ..+. ...+...++.
T Consensus 151 ~~v~~~~el~~a~~~~~~~~~lvEe~I~-~~~E~sv~~~~~~~G~~~~~~~--~~~~------~~~g~~~~~~------- 214 (352)
T TIGR01161 151 YRIRNEADLPQAAKELGDRECIVEEFVP-FERELSVIVARSADGETAFYPV--VENI------HQDGILRYVV------- 214 (352)
T ss_pred EEECCHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEECC--cccE------EeCCEEEEEE-------
Confidence 999999988653 34899999996 46888887763 23332110 0010 0112111100
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 257 ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 257 ~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
.+..+++. ..+.++++|.++.++||+ .++++|++++. +| .+||+|||.-||=.|
T Consensus 215 -~p~~~~~~-----~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg-~~~v~EinpR~~~sg 269 (352)
T TIGR01161 215 -APAAVPDA-----IQARAEEIARRLMEELGYVGVLAVEMFVLP-DG-RLLINELAPRVHNSG 269 (352)
T ss_pred -CCCCCCHH-----HHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CC-cEEEEEecCCCCCcC
Confidence 01122111 145689999999999998 47789999874 34 599999999998544
No 30
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=5.2e-14 Score=136.24 Aligned_cols=240 Identities=19% Similarity=0.184 Sum_probs=166.3
Q ss_pred cCCcEEEEecCCCCCC---CC-------CCccEEEEcccchhh-HHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHH
Q 019076 60 NKGISFVAIDQNRPLS---DQ-------GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDV 128 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~---~q-------~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L 128 (346)
..|.+...+|...... .. ..+|+++..+.+... -..+|.|++..-==.|.-|..+-..++||..+-.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~ 111 (317)
T COG1181 32 GFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLF 111 (317)
T ss_pred hcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHH
Confidence 5788888888866333 12 578898887766321 134666665421126788999999999998877666
Q ss_pred HhccccCCCCccccCcEEEEccCC-CChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCe
Q 019076 129 ADLNLSDCNGKVRVPRQMVITKDS-LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPM 200 (346)
Q Consensus 129 ~~l~~~~~~~~I~~P~~~~i~~~~-~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~ 200 (346)
.. .+++++..+.+..+. .+..-.-...+++||++|||. --|| |-++..+.+.+++.. .+..+
T Consensus 112 ~~-------~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~-~~gS--Svg~~~v~~~~d~~~~~e~a~~~d~~v 181 (317)
T COG1181 112 KA-------EGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPA-REGS--SVGRSPVNVEGDLQSALELAFKYDRDV 181 (317)
T ss_pred HH-------CCCCccceeeeecccchhHHHHHhhcccCCCEEEEcC-Cccc--eeeEEEeeeccchHHHHHHHHHhCCce
Confidence 64 589999999886542 222111135689999999997 4566 778999999888764 36789
Q ss_pred EEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcc-cceeecccccccccc---cCCCCCCCCCCCCCChHHHH
Q 019076 201 LLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKV-VSVFRFPRVSSAAAS---ADDADLDPGIAELPPRPLLE 276 (346)
Q Consensus 201 v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~-~g~~~~~~vs~~~~~---~~~~~~~~~~~~~p~~~~~~ 276 (346)
++|+|++ |+.+.|-++|+.. ... .++ .++.... ..+|+|...+..+.. ...+.+++. ..+.++
T Consensus 182 l~e~~~~--~rei~v~vl~~~~-~~~--~l~---~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~-----~~~~i~ 248 (317)
T COG1181 182 LREQGIT--GREIEVGVLGNDY-EEQ--ALP---LGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDE-----IHEEIK 248 (317)
T ss_pred eeccCCC--cceEEEEecCCcc-cce--ecC---ceEEecCCCeEEeeeccccCCCCceeeCCCCCCHH-----HHHHHH
Confidence 9999997 9999999999975 111 111 1122222 467788776543211 112222211 246789
Q ss_pred HHHHHHHHHhC-CcEeEEEEEEecCcCCeEEEEeccCCCCCCCCcccH
Q 019076 277 RLARELRHRLG-LRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYE 323 (346)
Q Consensus 277 ~lA~~l~~~lG-l~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~ 323 (346)
++|.++.++|| ..+.++|++.+..+| ++|++|||..|||..+--|+
T Consensus 249 ~lA~~a~~alg~~g~~rvDf~~~~~~g-~~~l~EvNt~PG~t~~sl~P 295 (317)
T COG1181 249 ELALRAYKALGCLGLARVDFFVDDDEG-EFVLLEVNTNPGMTAMSLFP 295 (317)
T ss_pred HHHHHHHHhcCCCceEEEEEEEECCCC-CEEEEEEeCCCCCcccccch
Confidence 99999999999 999999999987344 79999999999988776663
No 31
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.62 E-value=3.8e-14 Score=140.04 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=126.7
Q ss_pred HHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCC
Q 019076 98 DYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 177 (346)
Q Consensus 98 ~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~G 177 (346)
++++++ ..+..+++++..+.||..+-+.|.+ .+||+|++..+.+ .+++.+ ....++||+|+||.. |
T Consensus 80 ~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~v~s-~~~l~~--~~~~~g~P~vlKp~~--~ 145 (372)
T PRK06019 80 DALAAR--VPVPPGPDALAIAQDRLTEKQFLDK-------LGIPVAPFAVVDS-AEDLEA--ALADLGLPAVLKTRR--G 145 (372)
T ss_pred HHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHH-------CCCCCCCceEeCC-HHHHHH--HHHHcCCcEEEEeCC--C
Confidence 344444 4677999999999999999999986 5899999998853 333322 224689999999985 3
Q ss_pred CCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcccchhhcccceeeccc
Q 019076 178 SAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPR 249 (346)
Q Consensus 178 S~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~ 249 (346)
...|+++.++.+.++|... ..++++||||+ .++.+-|.++++ ++.++. ...++. ..|.+.++.
T Consensus 146 g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~-~~~E~sv~~~~~~~G~~~~~p--~~e~~~------~~gi~~~~~ 216 (372)
T PRK06019 146 GYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP-FEREVSVIVARGRDGEVVFYP--LVENVH------RNGILRTSI 216 (372)
T ss_pred CcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC-CCeEEEEEEEECCCCCEEEeC--CcccEE------eCCEEEEEE
Confidence 2368999999999988653 35899999997 478888877754 233211 111111 112222211
Q ss_pred ccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 250 VSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 250 vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.++.+++ ...++++++|.++.++||+. ++++|++++. +| ++||+|||.-|+-.|.
T Consensus 217 --------~pa~~~~-----~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~~~sg~ 272 (372)
T PRK06019 217 --------APARISA-----ELQAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRPHNSGH 272 (372)
T ss_pred --------CCCCCCH-----HHHHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCccCccc
Confidence 0112221 12456899999999999975 7789999864 33 6999999999986554
No 32
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.62 E-value=6e-15 Score=129.64 Aligned_cols=163 Identities=21% Similarity=0.319 Sum_probs=99.4
Q ss_pred HhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc
Q 019076 117 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL 196 (346)
Q Consensus 117 ~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l 196 (346)
+|.||..|.+++.+ .+|++|+++.+.. .+++.+. ...++||+|+||..+. +|.+|.++.+.++|.+.
T Consensus 1 ~~~dK~~~~~~~~~-------~gv~~P~~~~~~~-~~~~~~~--~~~~~~p~vvKp~~g~---gs~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKK-------AGVPVPKTRIVDS-EEELRAF--AEDLGFPFVVKPVDGS---GSRGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHH-------HTS----EEEECS-HHHHHHH--HHHSSSSEEEEESS-S---TTTT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHH-------cCcCCCCEEEECC-HHHHHHH--HHHcCCCEEEEcCccc---cCCCEEEeCCHHHHHHH
Confidence 57899999999997 4899999998853 3333332 3456799999999844 46899999999998764
Q ss_pred -----------CCCeEEEecccCCCeEE--EEEEECCEEEE--EEeecCCCcccchhhcccceeecccccccccccCCCC
Q 019076 197 -----------EPPMLLQEFVNHGGILF--KIYIIGETIKV--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD 261 (346)
Q Consensus 197 -----------~~p~v~QEfI~h~G~~~--KV~VvG~~v~~--~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~ 261 (346)
..++++||||+ |..+ .+++.++++++ +.+... ... .... ......... .
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~--g~e~~~~~~~~~G~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~-----------~ 131 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIP--GDEYSVDGVVDDGEVVFAGISRYVR-QSP-GHFS-GGVPTGYSV-----------P 131 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE-----SEEEEEEEEEETTEEEEEEEEEEEE-EET-CCCS-SSEEEEEEE-----------S
T ss_pred HHHHHHhcccCCccEEEEEeee--eeeEEEEEEEEcceEEEEEEEEEec-ccc-cccc-cceeeeeec-----------c
Confidence 25799999997 5555 66677777643 222211 100 0000 000000000 0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 262 LDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 262 ~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
. +.+..+.+++++.++.+++|. ..+++|++.+.+ | ++++||||.-+|
T Consensus 132 ~-----~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 132 S-----EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp -------CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred c-----ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 0 011136689999999999998 888999999974 5 799999998765
No 33
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.61 E-value=7.3e-14 Score=134.67 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=115.9
Q ss_pred eeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE
Q 019076 107 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 186 (346)
Q Consensus 107 ~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l 186 (346)
++.++++++..+.||..|.+.|.+ .+|++|+++.+.+ .+++.+.+....++||+|+||.. |+ .|.++.+
T Consensus 98 ~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~--g~-~s~gv~~ 166 (326)
T PRK12767 98 VLVSSKEVIEICNDKWLTYEFLKE-------NGIPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRD--GS-ASIGVFK 166 (326)
T ss_pred EEeCCHHHHHHHhcHHHHHHHHHH-------cCCCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCC--CC-CccCeEE
Confidence 567999999999999999999997 5899999987742 22222211235689999999976 43 5789999
Q ss_pred EeChhhhhcc---CCCeEEEecccCCCeEEEEEEE---CCEEE-EEEeecCCCcccchhhcccceeecccccccccccCC
Q 019076 187 AYDRFSLSEL---EPPMLLQEFVNHGGILFKIYII---GETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 187 v~~~~~L~~l---~~p~v~QEfI~h~G~~~KV~Vv---G~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
+.+.+++.+. ..++++|||| .|..+.+-++ ++++. +..+..+.. ..|. .. .
T Consensus 167 v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~~--------~~g~-----------~~-~ 224 (326)
T PRK12767 167 VNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIEV--------RAGE-----------TS-K 224 (326)
T ss_pred eCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeeee--------cCCc-----------ee-E
Confidence 9999998653 3589999999 5777765444 44443 333332210 0000 00 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+. ..+.+.+.+++.++.++||+ .+++||++++. | ++++||||.-++
T Consensus 225 ~~-------~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~~ 271 (326)
T PRK12767 225 GV-------TVKDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRFG 271 (326)
T ss_pred EE-------EcCCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 00 01235689999999999999 58889999985 3 699999997444
No 34
>PRK07206 hypothetical protein; Provisional
Probab=99.57 E-value=3e-13 Score=134.98 Aligned_cols=187 Identities=17% Similarity=0.192 Sum_probs=123.5
Q ss_pred HHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCC---cEEEecCc
Q 019076 98 DYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL---PLVAKPLV 174 (346)
Q Consensus 98 ~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~f---PvVvKP~~ 174 (346)
+.+.++-+.+.-++++++..++||..|.+.|.+ ++|++|++..+. +.+++.+.+ ..++| |+|+||..
T Consensus 86 a~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~-------~gi~~p~~~~~~-~~~e~~~~~--~~~g~~~~P~VvKP~~ 155 (416)
T PRK07206 86 DRLAEILTPQYSNDPALSSARRNKAEMINALAE-------AGLPAARQINTA-DWEEAEAWL--RENGLIDRPVVIKPLE 155 (416)
T ss_pred HHHHHhcCCCcCCChhhHHHhhCHHHHHHHHHH-------cCCCcccEEecC-CHHHHHHHH--HhcCCCCCCEEEeCCC
Confidence 334455666667899999999999999999996 589999999874 223333322 34566 99999987
Q ss_pred CCCCCCceeeEEEeChhhhhcc--------------CCCeEEEecccCCCeEEEE--EEECCEEEE--EEeecCCCcccc
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL--------------EPPMLLQEFVNHGGILFKI--YIIGETIKV--VRRFSLPNVSKR 236 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l--------------~~p~v~QEfI~h~G~~~KV--~VvG~~v~~--~~R~Slp~~~~~ 236 (346)
|+ +|.++.++.+.++|.+. ..++++||||. |..|-| ++.++++.+ +.+..-....
T Consensus 156 --g~-gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~-- 228 (416)
T PRK07206 156 --SA-GSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLN-- 228 (416)
T ss_pred --CC-CCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccC--
Confidence 43 57899999999987542 24799999995 777765 444666543 2322111110
Q ss_pred hhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCC
Q 019076 237 ELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 237 ~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fP 314 (346)
.+.+.+.. ..+.|. ..+..+.+.+++.++.++||+ ..+.+|++.+.+ ++++||||.-|
T Consensus 229 -----~~~~~~~~----------~~~~p~--~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~---g~~liEin~R~ 288 (416)
T PRK07206 229 -----SGSTVYDY----------DEFLDY--SEPEYQELVDYTKQALDALGIKNGPAHAEVMLTAD---GPRLIEIGARL 288 (416)
T ss_pred -----CCCceecc----------cccCCc--cHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCC---CCEEEEECCcc
Confidence 01000000 011110 012245688999999999998 578899998742 47899999999
Q ss_pred CCCCCcc
Q 019076 315 GYGKMPD 321 (346)
Q Consensus 315 g~~gv~~ 321 (346)
|=...+.
T Consensus 289 ~G~~~~~ 295 (416)
T PRK07206 289 DGGLHPD 295 (416)
T ss_pred CCCCccc
Confidence 8554443
No 35
>PRK06849 hypothetical protein; Provisional
Probab=99.56 E-value=1.1e-12 Score=130.04 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=114.4
Q ss_pred eeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE
Q 019076 107 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 186 (346)
Q Consensus 107 ~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l 186 (346)
+...++++++.|+||..+.+.+.+ .||++|++..+.+ .+++.+ +.....+||+|+||..++ +++++.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~-------~GipvP~t~~v~~-~~~l~~-~~~~~~~~P~vlKP~~~~---~~~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARS-------LGLSVPKTYLITD-PEAIRN-FMFKTPHTPYVLKPIYSR---FVRRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCEEEeCC-HHHHHH-HhhcCCCCcEEEEeCccc---CCCeEEE
Confidence 456889999999999999999997 4899999999853 333322 222224899999999744 4578888
Q ss_pred EeChhhhhcc----CCCeEEEecccCCCeEE--EEEEECCEEEEE-EeecCCCcccchhhcccceeecccccccccccCC
Q 019076 187 AYDRFSLSEL----EPPMLLQEFVNHGGILF--KIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 187 v~~~~~L~~l----~~p~v~QEfI~h~G~~~--KV~VvG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
+.+.+.+..+ ..|+++||||+ |..+ -.++.++++.+. .+. +.. ....+. .
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~--G~e~~~~~~~~~G~v~~~~~~~--~~~-----~~~~~~-----------~--- 227 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQ--GKEYCSYSIVRSGELRAHSCYK--PEY-----CAGSGA-----------Q--- 227 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEec--CCeEEEEEEEECCEEEEEEEee--ccc-----cCCCCc-----------e---
Confidence 8888777765 35799999996 5554 455567776542 211 110 000000 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
....+ . ..+.+.+++.++.++||++ .++||++.+. +| ++|+||||.=++
T Consensus 228 ~~~~~----~-~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g-~~~~iEiNpR~~ 277 (389)
T PRK06849 228 IAFQP----I-NHPRIEEFVTHFVKELNYTGQISFDFIETE-NG-DAYPIECNPRTT 277 (389)
T ss_pred eEeEE----C-CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CC-CEEEEEecCCCC
Confidence 00011 0 1356899999999999988 7789999873 45 799999997666
No 36
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.54 E-value=6.2e-13 Score=131.74 Aligned_cols=231 Identities=13% Similarity=0.192 Sum_probs=144.7
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCC--------------C---------CCCccEEEEcccchhhHHHHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLS--------------D---------QGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~--------------~---------q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
..+...++ +.|+.++.+|.+..-. + ...+|+|+.-..+ .....+... ++
T Consensus 25 ~~~~~a~~------~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~-~~~~~~~~l-~~ 96 (395)
T PRK09288 25 KEVAIEAQ------RLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEA-IATDALVEL-EK 96 (395)
T ss_pred HHHHHHHH------HCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCc-CCHHHHHHH-Hh
Confidence 34555566 8899999888753111 0 1246666653322 112223333 34
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
. ++.+..++++++.++||..+-+.+.+ ..+||+|++..+.+ .+++.+. ...++||+|+||.. |+ .|.
T Consensus 97 ~-g~~~~~~~~a~~~~~dK~~~k~~l~~------~~gip~p~~~~~~s-~~~l~~~--~~~~g~P~VvKP~~--g~-~s~ 163 (395)
T PRK09288 97 E-GFNVVPTARATRLTMNREGIRRLAAE------ELGLPTSPYRFADS-LEELRAA--VEEIGYPCVVKPVM--SS-SGK 163 (395)
T ss_pred c-CCeeCCCHHHHHHHhCHHHHHHHHHH------hCCCCCCCceEECC-HHHHHHH--HHhcCCCEEEEeCC--Cc-CCC
Confidence 3 67777889999999999998888742 25899999998853 3333222 24689999999985 43 578
Q ss_pred eeEEEeChhhhhcc-----------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCcccchhhcccceeecc
Q 019076 183 ELFLAYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFP 248 (346)
Q Consensus 183 ~m~lv~~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~ 248 (346)
++.++.+.++|.+. ..++++||||+ .|..+.|.++.+. .... ....+. . ..+.+..
T Consensus 164 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~sv~~~~~~~~~~~~~--~~~~~~-----~-~~~~~~~- 233 (395)
T PRK09288 164 GQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEITLLTVRAVDGGTHFC--APIGHR-----Q-EDGDYRE- 233 (395)
T ss_pred CeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcccE-----E-ECCEEEE-
Confidence 99999999887542 25899999996 4778888776432 2221 011111 0 0011100
Q ss_pred cccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 249 RVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 249 ~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
...+..+++ ...+.++++|.++.++||. ..+.+|++++.+ ++||||||.-||-.+....
T Consensus 234 -------~~~p~~l~~-----~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~~~~~~~~ 293 (395)
T PRK09288 234 -------SWQPQPMSP-----AALEEAQEIAKKVTDALGGRGLFGVELFVKGD---EVYFSEVSPRPHDTGMVTL 293 (395)
T ss_pred -------EECCCCCCH-----HHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---eEEEEEecCCCCCCcceee
Confidence 000112211 1134578899999999985 445699998642 6999999999986655443
No 37
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.53 E-value=1.4e-12 Score=135.68 Aligned_cols=244 Identities=14% Similarity=0.087 Sum_probs=154.5
Q ss_pred CCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCC-C--------------------CCccEEE
Q 019076 26 PERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSD-Q--------------------GPFDVVL 84 (346)
Q Consensus 26 ~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~-q--------------------~~fDvil 84 (346)
....+||....- .+...+...|+ +.|++++.+|.+..-.. + ...|+|.
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~------~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt 88 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAAS------QMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLT 88 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHH------HCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEE
Confidence 345678887766 22344555666 89999999998652110 0 0123331
Q ss_pred EcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCC
Q 019076 85 HKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL 164 (346)
Q Consensus 85 hK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l 164 (346)
.-... .....+ +.+++ -++++..+++++..|+||..+-+.|.+ ++|++|++..+.+ .+++.+ ....+
T Consensus 89 ~e~e~-v~~~~l-~~le~-~gi~v~ps~~al~i~~DK~~~K~~l~~-------~GIptp~~~~v~~-~~el~~--~~~~i 155 (577)
T PLN02948 89 VEIEH-VDVDTL-EALEK-QGVDVQPKSSTIRIIQDKYAQKVHFSK-------HGIPLPEFMEIDD-LESAEK--AGDLF 155 (577)
T ss_pred EecCC-CCHHHH-HHHHh-cCCccCCCHHHHHHhcCHHHHHHHHHH-------CCcCCCCeEEeCC-HHHHHH--HHHhc
Confidence 11000 012233 33333 356677899999999999999999986 5899999998852 222322 23468
Q ss_pred CCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcc
Q 019076 165 KLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVS 234 (346)
Q Consensus 165 ~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~ 234 (346)
+||+|+||.. |+.+|.++.++.++++|... ..++++|+||+ ..+.+-|.|+++ .+.++ |-.
T Consensus 156 g~P~VvKP~~--ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~-~~~EisV~v~r~~~G~i~~~-----p~~- 226 (577)
T PLN02948 156 GYPLMLKSRR--LAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP-FVKELAVMVARSRDGSTRCY-----PVV- 226 (577)
T ss_pred CCcEEEEeCC--CCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC-CCeEEEEEEEECCCCCEEEe-----cCc-
Confidence 9999999985 33367899999999887542 35899999995 348888888843 23321 211
Q ss_pred cchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCC
Q 019076 235 KRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 235 ~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
+.....+.+.+. ..++.+++. ..+.++++|.++.++||.. ++.+|++++. .| .+||+|||.-
T Consensus 227 --E~~~~~~~~~~~--------~~Pa~l~~~-----~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG-~v~v~EInpR 289 (577)
T PLN02948 227 --ETIHKDNICHVV--------EAPANVPWK-----VAKLATDVAEKAVGSLEGAGVFGVELFLLK-DG-QILLNEVAPR 289 (577)
T ss_pred --ccEEECCeeEEE--------EECCCCCHH-----HHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CC-cEEEEEEeCC
Confidence 100111111110 012223221 2456899999999999865 4569999975 34 6899999999
Q ss_pred CCCCCC
Q 019076 314 PGYGKM 319 (346)
Q Consensus 314 Pg~~gv 319 (346)
||..|.
T Consensus 290 pg~sGh 295 (577)
T PLN02948 290 PHNSGH 295 (577)
T ss_pred CCCCCc
Confidence 996653
No 38
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.53 E-value=5e-13 Score=148.04 Aligned_cols=218 Identities=17% Similarity=0.256 Sum_probs=138.5
Q ss_pred cCCcEEEEecCCCCC-C------C-----------------CCCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHH
Q 019076 60 NKGISFVAIDQNRPL-S------D-----------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDA 114 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-~------~-----------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~a 114 (346)
+.|++++.+|.+-.. + + ....|.|+.-..++... .+...+++ -|+.++ .++++
T Consensus 586 ~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~~g~~~~~-~la~~le~-~Gi~ilg~s~~a 663 (1066)
T PRK05294 586 EAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQTPL-KLAKALEA-AGVPILGTSPDA 663 (1066)
T ss_pred HCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEEeCchhHH-HHHHHHHH-CCCceeCCCHHH
Confidence 899999999876421 1 0 12346666555543322 33333444 477765 67899
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~ 194 (346)
+..+.||..+.+.|.+ .+|++|++..+.+ .++..+. ...++||+|+||.. |+ +|.+|.++.|+++|.
T Consensus 664 i~~~~DK~~~~~~L~~-------~GIp~P~~~~~~s-~ee~~~~--~~~igyPvvVKP~~--~~-Gg~Gv~iv~~~eeL~ 730 (1066)
T PRK05294 664 IDLAEDRERFSKLLEK-------LGIPQPPNGTATS-VEEALEV--AEEIGYPVLVRPSY--VL-GGRAMEIVYDEEELE 730 (1066)
T ss_pred HHHhCCHHHHHHHHHH-------cCcCCCCeEEECC-HHHHHHH--HHhcCCCeEEEeCC--CC-CCCcEEEECCHHHHH
Confidence 9999999999999986 5899999998853 2222222 34689999999976 43 678999999999886
Q ss_pred cc---------CCCeEEEecccCC-CeEEEEEEECCEEEE--EEe-ecCCCcccchhhcccceeecccccccccccCCCC
Q 019076 195 EL---------EPPMLLQEFVNHG-GILFKIYIIGETIKV--VRR-FSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD 261 (346)
Q Consensus 195 ~l---------~~p~v~QEfI~h~-G~~~KV~VvG~~v~~--~~R-~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~ 261 (346)
.+ ..|+++||||... ...+-+++-|+.+.+ ..+ .....+..++ ....+ ....
T Consensus 731 ~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gd-----s~~~~----------p~~~ 795 (1066)
T PRK05294 731 RYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGD-----SACSL----------PPQT 795 (1066)
T ss_pred HHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeEEEeeeEEeeeeccccCCC-----CcEEe----------cCCC
Confidence 52 4689999999633 223344443544433 111 1101110000 00000 0011
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 262 LDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 262 ~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+++ ...+.++++|.++.++||+ .++++|++.++ +++||||||.-|+
T Consensus 796 l~~-----~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~---~~~yViEiNpR~s 842 (1066)
T PRK05294 796 LSE-----EIIEEIREYTKKLALELNVVGLMNVQFAVKD---DEVYVIEVNPRAS 842 (1066)
T ss_pred CCH-----HHHHHHHHHHHHHHHHcCCeeeEEEEEEEEC---CeEEEEEEecCCC
Confidence 111 0135689999999999999 56679999874 3699999998876
No 39
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.51 E-value=2.2e-12 Score=142.74 Aligned_cols=217 Identities=18% Similarity=0.280 Sum_probs=138.2
Q ss_pred cCCcEEEEecCCCCC-C------C-----------------CCCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHH
Q 019076 60 NKGISFVAIDQNRPL-S------D-----------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDA 114 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-~------~-----------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~a 114 (346)
+.|++++.+|.+-.- + + ....|.|+.-..+... ..+...+++ .|++++ .++++
T Consensus 586 ~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~~gg~~~-~~la~~le~-~Gi~i~G~s~~~ 663 (1050)
T TIGR01369 586 ELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKALEE-AGVPILGTSPES 663 (1050)
T ss_pred hCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEccCcHhH-HHHHHHHHH-CCCcEECCCHHH
Confidence 899999999885311 1 0 1124555544433221 123333333 467665 78999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~ 194 (346)
+..+.||..+.+.|.+ .+|++|++..+. +.+++.+. ...++||+|+||.... +|.+|.+++|+++|.
T Consensus 664 i~~~~DK~~f~~lL~~-------~GIp~P~~~~v~-s~ee~~~~--~~~igyPvIVKP~~~~---Gg~gv~iv~~~eeL~ 730 (1050)
T TIGR01369 664 IDRAEDREKFSELLDE-------LGIPQPKWKTAT-SVEEAVEF--ASEIGYPVLVRPSYVL---GGRAMEIVYNEEELR 730 (1050)
T ss_pred HHHHCCHHHHHHHHHH-------CCcCCCCeEEEC-CHHHHHHH--HHhcCCCEEEEECCCC---CCCCeEEECCHHHHH
Confidence 9999999999999997 589999999885 33333221 3468999999998743 568999999999986
Q ss_pred cc---------CCCeEEEecccCCCeEEE--EEEECCEEEEE--Eee-cCCCcccchhhcccceeecccccccccccCCC
Q 019076 195 EL---------EPPMLLQEFVNHGGILFK--IYIIGETIKVV--RRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDA 260 (346)
Q Consensus 195 ~l---------~~p~v~QEfI~h~G~~~K--V~VvG~~v~~~--~R~-Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~ 260 (346)
.. +.|+++||||+ +|..+- +++.|+++.+. ... ...++..++ ....++ ..
T Consensus 731 ~~l~~a~~~s~~~~vlVeefI~-~G~E~~Vd~l~d~g~v~i~~i~e~~~~~gv~sGd-----s~~~~P----------~~ 794 (1050)
T TIGR01369 731 RYLEEAVEVSPEHPVLIDKYLE-DAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGD-----STCVLP----------PQ 794 (1050)
T ss_pred HHHHHHHHhCCCCCEEEeecCC-CCeEEEEEEEEeCCEEEEEEEEEeecccCCcCCC-----ceEEec----------CC
Confidence 52 46899999996 366554 45556666542 221 101110000 000000 00
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 261 DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 261 ~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
.+++ ...+.++++|.+++++||+. ++++|++++. +++||||||.-++
T Consensus 795 ~l~~-----~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~---~~~yvIEvNpR~s 842 (1050)
T TIGR01369 795 TLSA-----EIVDRIKDIVRKIAKELNVKGLMNIQFAVKD---GEVYVIEVNPRAS 842 (1050)
T ss_pred CCCH-----HHHHHHHHHHHHHHHHCCCcceEEEEEEEEC---CeEEEEEEeCCCC
Confidence 1111 01356899999999999974 4459999974 3799999999886
No 40
>PRK08462 biotin carboxylase; Validated
Probab=99.48 E-value=2.9e-12 Score=129.39 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=117.1
Q ss_pred CCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|+++ -.++++++.+.||..|.+.|.+ ++|++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 100 ~Gi~~~g~~~~~~~~~~dK~~~r~~l~~-------~gIp~pp~~~~~~~-~~~~~~~--~~~~~g~PvvvKP~~--g~-g 166 (445)
T PRK08462 100 HNIKFIGPSVEVMALMSDKSKAKEVMKR-------AGVPVIPGSDGALK-SYEEAKK--IAKEIGYPVILKAAA--GG-G 166 (445)
T ss_pred CCCeEECcCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEeCC--CC-C
Confidence 46654 5888999999999999999986 589998864 232 2222222 234689999999987 44 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-Ee-ecCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RR-FSLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~-~R-~Slp~~~~~~~~~~~ 242 (346)
|++|.++.++++|... +.++++||||+ +++.+.|.++|+. ++.. .| .+.... ..
T Consensus 167 s~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~-------~~ 238 (445)
T PRK08462 167 GRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFIN-NPRHIEVQILGDKHGNVIHVGERDCSLQRR-------HQ 238 (445)
T ss_pred CCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCC-CCeEEEEEEEECCCCCEEEEEeccccceec-------cc
Confidence 7899999999988642 24699999996 4677888888653 2221 11 111000 00
Q ss_pred ceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 243 SVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
..+ . . .+. .+++. ..+.+.++|.++.++||+.-++ ||++++.+ | ++||+|||.-+|-.
T Consensus 239 ~~~-----~----~-~p~~~l~~~-----~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiNpR~~~~ 298 (445)
T PRK08462 239 KLI-----E----E-SPAVVLDEK-----TRERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMNTRLQVE 298 (445)
T ss_pred ceE-----E----E-cCCCCCCHH-----HHHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEECCcCcC
Confidence 000 0 0 000 11110 1356899999999999997555 99999753 3 69999999988754
No 41
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.48 E-value=3.3e-12 Score=139.18 Aligned_cols=178 Identities=17% Similarity=0.214 Sum_probs=118.8
Q ss_pred HHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 100 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 100 ~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
+.++-+++- ++++++..++||..|-+.|.+ ++|++|++..+.+ ..+..+. ...++||+|+||..+.
T Consensus 88 lae~lglpg-~~~ea~~~~~dK~~~r~~L~~-------~GIp~P~~~~v~~-~~e~~~~--~~~~~~PvVVKP~~g~--- 153 (887)
T PRK02186 88 VARRLGLPA-ANTEAIRTCRDKKRLARTLRD-------HGIDVPRTHALAL-RAVALDA--LDGLTYPVVVKPRMGS--- 153 (887)
T ss_pred HHHHhCcCC-CCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEEEeCC-HHHHHHH--HHhCCCCEEEEeCCCC---
Confidence 334445554 567999999999999999996 5899999998853 2222221 2468999999998743
Q ss_pred CceeeEEEeChhhhhcc--------CCCeEEEecccCCCeEEEE--EEECCEE--EEEEeecCCCcccchhhcccceeec
Q 019076 180 KSHELFLAYDRFSLSEL--------EPPMLLQEFVNHGGILFKI--YIIGETI--KVVRRFSLPNVSKRELAKVVSVFRF 247 (346)
Q Consensus 180 ~sh~m~lv~~~~~L~~l--------~~p~v~QEfI~h~G~~~KV--~VvG~~v--~~~~R~Slp~~~~~~~~~~~g~~~~ 247 (346)
+|.++.++.|.++|... ..++++||||+ |..|-| ++.++.+ ..+.++....-+ .+... |
T Consensus 154 gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i~~~g~~~i~~i~~k~~~~~~--~~ve~-g---- 224 (887)
T PRK02186 154 GSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKHLGPPP--HFVEI-G---- 224 (887)
T ss_pred CCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEEEECCcEEEEEEEeeecCCCC--CeEEe-c----
Confidence 57899999999887542 46899999995 666655 4444443 234444321100 00000 0
Q ss_pred ccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 248 PRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 248 ~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
...+..+++ +..+.+.+++.++.++||+ ..+++|++.+. ++++|||||.-+|=
T Consensus 225 --------~~~P~~l~~-----~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~---~g~~liEIn~R~~G 279 (887)
T PRK02186 225 --------HDFPAPLSA-----PQRERIVRTVLRALDAVGYAFGPAHTELRVRG---DTVVIIEINPRLAG 279 (887)
T ss_pred --------cccCCCCCH-----HHHHHHHHHHHHHHHHcCCCcCceEEEEEEEC---CCEEEEEECCCCCC
Confidence 000111111 1245688999999999998 56889999874 25899999987763
No 42
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.47 E-value=3.2e-12 Score=126.81 Aligned_cols=212 Identities=13% Similarity=0.137 Sum_probs=129.4
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHH
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSM 124 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~ 124 (346)
..+.++|+ +.+++++.+.++.++ ...+.+..++ -|+.++ .++++++.+.||..+
T Consensus 17 ~~l~~~~~------~~~id~vi~g~E~~l------------------~~~~~d~l~~-~Gi~~~g~s~~a~~l~~dK~~~ 71 (379)
T PRK13790 17 QAILDFAK------QQNVDWVVIGPEQPL------------------IDGLADILRA-NGFKVFGPNKQAAQIEGSKLFA 71 (379)
T ss_pred HHHHHHHH------HhCCCEEEECCcHHH------------------HHHHHHHHHh-CCCcEECCCHHHHHHhCCHHHH
Confidence 44566677 777777776665432 1234444444 467766 555999999999999
Q ss_pred HHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--------
Q 019076 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------- 196 (346)
Q Consensus 125 ~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------- 196 (346)
-+.|++ ++||+|++..+. +.+++.+. ...++||+|+||.. |+ +|.+|.++.|.+++.+.
T Consensus 72 k~~l~~-------~gIptp~~~~~~-~~~ea~~~--~~~~g~PvVvKp~~--~~-~gkGV~iv~~~~el~~a~~~~~~~~ 138 (379)
T PRK13790 72 KKIMEK-------YNIPTADYKEVE-RKKDALTY--IENCELPVVVKKDG--LA-AGKGVIIADTIEAARSAIEIMYGDE 138 (379)
T ss_pred HHHHHH-------CCCCCCCEEEEC-CHHHHHHH--HHhcCCCEEEEeCC--CC-CCCCEEEECCHHHHHHHHHHHHhcC
Confidence 999996 689999998874 22222222 23689999999974 43 67999999999887541
Q ss_pred -CCCeEEEecccCCCeEEEEEEE--CCEEEE---EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC
Q 019076 197 -EPPMLLQEFVNHGGILFKIYII--GETIKV---VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP 270 (346)
Q Consensus 197 -~~p~v~QEfI~h~G~~~KV~Vv--G~~v~~---~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p 270 (346)
..++++||||. |..+-|.++ |+.+.. ..+.....++ +++..+ +++ .+...|. ..++
T Consensus 139 ~~~~vlvEe~i~--G~E~sv~~~~~g~~~~~~~~~~~~~kr~~~-~d~g~~----------tgg----~~~~~p~-~~l~ 200 (379)
T PRK13790 139 EEGTVVFETFLE--GEEFSLMTFVNGDLAVPFDCIAQDHKRAFD-HDEGPN----------TGG----MGAYCPV-PHIS 200 (379)
T ss_pred CCCeEEEEEccc--CceEEEEEEeeCCEEEeccccccccccccc-CCCCCc----------CCC----CceEeeC-CCCC
Confidence 34799999995 677766554 554321 1111000000 011100 000 0001110 0011
Q ss_pred ---ChHHHHHHHHHHHHHh---CCcEeE---EEEEEecCcCCeEEEEeccCCCCC
Q 019076 271 ---PRPLLERLARELRHRL---GLRLFN---IDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 271 ---~~~~~~~lA~~l~~~l---Gl~lfG---vDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
.+...++++.++.++| |+.++| +|++... . ++||+|+|.-||-
T Consensus 201 ~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~--g~~viEiN~R~G~ 252 (379)
T PRK13790 201 DDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-D--GPKVIEFNARFGD 252 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-C--CeEEEEEEcccCC
Confidence 0112278888888888 666666 6999864 2 4899999998874
No 43
>PLN02735 carbamoyl-phosphate synthase
Probab=99.44 E-value=6.2e-12 Score=139.28 Aligned_cols=225 Identities=16% Similarity=0.219 Sum_probs=141.1
Q ss_pred cCCcEEEEecCCCCC------------------------CCCCCccEEEEcccchhh---HHHHH--HHHHhCCCeee-e
Q 019076 60 NKGISFVAIDQNRPL------------------------SDQGPFDVVLHKLSGMEW---CKIIE--DYRQKHPEVTI-L 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l------------------------~~q~~fDvilhK~t~~~~---~~~l~--~y~~~~p~v~V-I 109 (346)
+.|++++.+|.+-.- .....+|+|+.=+.++.. ...+. ..++. -|+++ -
T Consensus 55 e~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~-~GI~~~G 133 (1102)
T PLN02735 55 EEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEK-YGVELIG 133 (1102)
T ss_pred HcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHH-CCCEEEC
Confidence 899999999986421 012457888876544221 11122 12233 45544 4
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCC-CcEEEecCcCCCCCCceeeEEEe
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGSAKSHELFLAY 188 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-fPvVvKP~~a~GS~~sh~m~lv~ 188 (346)
.+++++..+.||..+-+.|.+ .|||+|++..+.+ .++..+ ....++ ||+|+||..+. +|.++.+++
T Consensus 134 ~~~~ai~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s-~eea~~--~~~~iG~yPvVVKP~~~~---GG~Gv~iv~ 200 (1102)
T PLN02735 134 AKLDAIKKAEDRELFKQAMEK-------IGLKTPPSGIATT-LDECFE--IAEDIGEFPLIIRPAFTL---GGTGGGIAY 200 (1102)
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeeEeCC-HHHHHH--HHHHhCCCCEEEEeCCCC---CCCceEEEC
Confidence 688999999999999999986 5899999998853 222222 134577 99999998733 456899999
Q ss_pred Chhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 189 DRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 189 ~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
|+++|... ..++++||||. +.+.|-|-|++|. +..+ .+..+++.....+ | +.+. .
T Consensus 201 n~eEL~~a~~~a~~~s~~~~VLVEe~I~-G~kE~ev~Vl~D~~g~~i~v--~~ie~~dp~gvh~--G----~s~~----v 267 (1102)
T PLN02735 201 NKEEFETICKAGLAASITSQVLVEKSLL-GWKEYELEVMRDLADNVVII--CSIENIDPMGVHT--G----DSIT----V 267 (1102)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecC-CCeEEEEEEEEcCCCCEEEE--eeEEEEcCCcccc--C----CEEE----E
Confidence 99998653 35799999995 2378999988762 2211 0111110000000 0 0000 0
Q ss_pred cCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 257 ADDA-DLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 257 ~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+ ++ .+++. ....++++|.++.++||+ ..+++|++.+..+| ++|||||| |.+.+..
T Consensus 268 a-Pa~tL~~~-----~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVN--PR~s~ss 325 (1102)
T PLN02735 268 A-PAQTLTDK-----EYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDG-EVMIIEMN--PRVSRSS 325 (1102)
T ss_pred E-eCCCCCHH-----HHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCC-cEEEEEec--CCCCCcc
Confidence 0 11 11110 134689999999999998 58889999974334 79999999 4444443
No 44
>PRK05586 biotin carboxylase; Validated
Probab=99.42 E-value=4.6e-12 Score=128.10 Aligned_cols=179 Identities=12% Similarity=0.190 Sum_probs=118.3
Q ss_pred CCee-eeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~-VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|++ +--+++++..+.||..+-+.+.+ ++|++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 98 ~gi~~~g~s~~~~~~~~DK~~~k~~l~~-------~GIpvp~~~~~~~~-~~~e~~~--~~~~igyPvvvKP~~--gg-g 164 (447)
T PRK05586 98 CNIVFIGPDSETIELMGNKSNAREIMIK-------AGVPVVPGSEGEIE-NEEEALE--IAKEIGYPVMVKASA--GG-G 164 (447)
T ss_pred CCCcEECcCHHHHHhhCCHHHHHHHHHH-------CCCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEECC--CC-C
Confidence 4554 56788999999999999999986 589999874 232 2222222 234689999999987 44 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCcccchhhcccce
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSV 244 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~ 244 (346)
|++|.++.++++|.+. +.++++||||+ +++.+.|.|+++. +.....+... +. ..+...
T Consensus 165 g~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~-g~~ei~v~v~~d~~G~~~~~~~~~~~-~~----~~~~~~ 238 (447)
T PRK05586 165 GRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE-NPKHIEFQILGDNYGNVVHLGERDCS-LQ----RRNQKV 238 (447)
T ss_pred CCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC-CCeEEEEEEEECCCCCEEEEeceecc-eE----ecccce
Confidence 7999999999987542 35799999996 3478888888753 3222111000 00 000000
Q ss_pred eecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 245 FRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 245 ~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.. .+....+++ ...+.+.++|.++.++||+.-.+ +|++++. +| ++||+|||.-||..
T Consensus 239 ~~---------~~p~~~l~~-----~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNpR~~~~ 296 (447)
T PRK05586 239 LE---------EAPSPVMTE-----ELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNTRIQVE 296 (447)
T ss_pred EE---------EcCCCCCCH-----HHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEECCCCCC
Confidence 00 000001111 01346899999999999998776 9999974 34 69999999888754
No 45
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.42 E-value=1.8e-11 Score=125.64 Aligned_cols=176 Identities=13% Similarity=0.211 Sum_probs=119.5
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|++++ .++++++.+.||..+.+.+.+ .+||+|++... -.+.+++.+ ....++||+|+||.. |+ +|
T Consensus 98 ~gi~~iGps~~~i~~~~DK~~~k~~l~~-------~GVpv~p~~~~~v~~~~e~~~--~a~~igyPvvIKp~~--Gg-GG 165 (499)
T PRK08654 98 AGIVFIGPSSDVIEAMGSKINAKKLMKK-------AGVPVLPGTEEGIEDIEEAKE--IAEEIGYPVIIKASA--GG-GG 165 (499)
T ss_pred CCCcEECCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCCcCcCCCCHHHHHH--HHHHhCCCEEEEeCC--CC-CC
Confidence 467665 568999999999999999986 58999877642 122222222 234689999999986 33 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhcccc
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~~g 243 (346)
.+|.++.++++|.+. +.++++|+||. +++.+-|-|+||. +....|. |...- ...
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~-~~r~ieVqvl~d~~G~vv~l~~recsiqrr-------~qk 237 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLE-KPRHIEIQILADKHGNVIHLGDRECSIQRR-------HQK 237 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeeccccccC-------ccc
Confidence 899999999988542 35799999997 4677888888764 2233332 21100 000
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
... .+ ++ .+++ ...+.+.++|.++.+++|..-.| ||++.++ + ++|++|||.-++..
T Consensus 238 ~ie---------~~-Pa~~l~~-----~~~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpRlqve 295 (499)
T PRK08654 238 LIE---------EA-PSPIMTP-----ELRERMGEAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTRLQVE 295 (499)
T ss_pred eEE---------EC-CCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECCCCCC
Confidence 000 00 00 1111 12456899999999999999877 9999863 3 69999999988754
No 46
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.40 E-value=6e-12 Score=128.09 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=119.5
Q ss_pred CCee-eeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~-VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|++ +-.++++++.|.||..+.+.+.+ ++||+|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 101 ~gi~~igps~~ai~~~~DK~~~r~~l~~-------~GIp~~p~~~~~v~-~~~e~~~--~~~~igyPvvvKp~~--gg-g 167 (467)
T PRK12833 101 AGLIFVGPDAQTIRTMGDKARARRTARR-------AGVPTVPGSDGVVA-SLDAALE--VAARIGYPLMIKAAA--GG-G 167 (467)
T ss_pred cCCCccCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcCcCcC-CHHHHHH--HHHHhCCCEEEEECC--CC-C
Confidence 3554 45678999999999999999986 589998775 442 2222222 234689999999986 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE--E-EEEEee-cCCCcccchhhcccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET--I-KVVRRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~--v-~~~~R~-Slp~~~~~~~~~~~g 243 (346)
|.+|.++.++++|... +..+++|+||+. |+.+-|-|+||. + ....|. +.... ...
T Consensus 168 g~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r~-------~~k 239 (467)
T PRK12833 168 GRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDGERVVHLFERECSLQRR-------RQK 239 (467)
T ss_pred CCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCCCcEEEEEEeecccccC-------Ccc
Confidence 7899999999988642 356999999973 789999888774 2 233331 11100 000
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.+.. +....+++ ...+.+.++|.++.++||+.-.+ +|++.+..+| .+||+|||.-++..
T Consensus 240 i~e~---------~p~~~l~~-----~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g-~~~~iEvNpR~~~~ 299 (467)
T PRK12833 240 ILEE---------APSPSLTP-----AQRDALCASAVRLARQVGYRGAGTLEYLFDDARG-EFYFIEMNTRIQVE 299 (467)
T ss_pred EEEE---------CCCCCCCH-----HHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCC-CEEEEEEECCCCcc
Confidence 0000 00001111 12456899999999999998654 9999975334 69999999888743
No 47
>PLN02735 carbamoyl-phosphate synthase
Probab=99.40 E-value=2.2e-11 Score=134.91 Aligned_cols=222 Identities=15% Similarity=0.220 Sum_probs=141.8
Q ss_pred cCCcEEEEecCCCCCC-------C-----------------CCCccEEEEcccchh---hHHHHHHHHHhCC--------
Q 019076 60 NKGISFVAIDQNRPLS-------D-----------------QGPFDVVLHKLSGME---WCKIIEDYRQKHP-------- 104 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~-------~-----------------q~~fDvilhK~t~~~---~~~~l~~y~~~~p-------- 104 (346)
+.|++.+.+|-+-.-. + ....|.|+.=..++. ....+.+++.+++
T Consensus 606 ~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~ 685 (1102)
T PLN02735 606 DAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNG 685 (1102)
T ss_pred HcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcC
Confidence 8999999988753221 1 123566665444322 2234455544332
Q ss_pred Ce-eeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 105 EV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 105 ~v-~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
++ ++--++++|+.+.||..+-+.|.+ .+||+|++..+.+ .+++.+ ....++||+|+||.. |+ +|.+
T Consensus 686 gi~i~G~s~e~i~i~~DK~~~k~~l~~-------~GIp~p~~~~v~s-~eea~~--~a~~iGyPvvVKP~~--g~-gG~G 752 (1102)
T PLN02735 686 NVKIWGTSPDSIDAAEDRERFNAILNE-------LKIEQPKGGIARS-EADALA--IAKRIGYPVVVRPSY--VL-GGRA 752 (1102)
T ss_pred CeEEECCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeeEeCC-HHHHHH--HHHhcCCCeEEEeCC--CC-CCCc
Confidence 43 456889999999999999999986 5899999987742 222222 235689999999986 33 4689
Q ss_pred eEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEeecCCCcccchhhcccceeecccc
Q 019076 184 LFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRFSLPNVSKRELAKVVSVFRFPRV 250 (346)
Q Consensus 184 m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~-~~R~Slp~~~~~~~~~~~g~~~~~~v 250 (346)
|.+|++.++|... +.|+++|+||. +|+.+-|-+++| .+.+ ..+.-... .|.......
T Consensus 753 ~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~~---------~gvhsGds~ 822 (1102)
T PLN02735 753 MEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-DATEIDVDALADSEGNVVIGGIMEHIEQ---------AGVHSGDSA 822 (1102)
T ss_pred EEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-CcEEEEEEEEECCCCCEEEecceEeeec---------cCccCCCcc
Confidence 9999999998653 35899999996 489999999975 2322 11110000 000000000
Q ss_pred cccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEeccCCCC
Q 019076 251 SSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 251 s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lf-GvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
. ......+++. ..+.++++|.+++++||..-+ ++|++++.+ | ++||+|||.-||
T Consensus 823 ~----~~P~~~L~~e-----~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~d-g-~~yviEiNpR~s 877 (1102)
T PLN02735 823 C----SLPTQTIPSS-----CLATIRDWTTKLAKRLNVCGLMNCQYAITPS-G-EVYIIEANPRAS 877 (1102)
T ss_pred E----EecCCCCCHH-----HHHHHHHHHHHHHHHcCCcceeeEEEEEcCC-C-cEEEEEEeCCCC
Confidence 0 0000011110 135688999999999997644 599999632 3 699999999998
No 48
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.39 E-value=4.5e-11 Score=122.05 Aligned_cols=177 Identities=12% Similarity=0.193 Sum_probs=116.9
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcE-EEEc-cCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQ-MVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~-~~i~-~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|++++ .++++++.+.||..+.+.+.+ .+||+|+. .... .+.+++.+ ....++||+|+||.. |+ +
T Consensus 97 ~Gi~~iGps~~~i~~~~DK~~~k~~l~~-------~gIpvpp~~~~~~~~~~~~~~~--~~~~igyPvvvKP~~--gg-G 164 (478)
T PRK08463 97 AGIIFIGPKSEVIRKMGNKNIARYLMKK-------NGIPIVPGTEKLNSESMEEIKI--FARKIGYPVILKASG--GG-G 164 (478)
T ss_pred CCCceecCCHHHHHhhCcHHHHHHHHHH-------cCCCCCCCccccCCCCHHHHHH--HHHHhCCCEEEEeCC--CC-C
Confidence 467766 668999999999999999986 58999774 3332 12222222 234689999999986 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---E-EEEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---I-KVVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v-~~~~R~-Slp~~~~~~~~~~~ 242 (346)
|.+|.++.++++|... +.++++|+||+ +++.+-+-|+|+. + ....|. +... .
T Consensus 165 g~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~-~~~~iev~v~~d~~g~v~~~~er~~s~~~--------~- 234 (478)
T PRK08463 165 GRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV-NPRHIEFQILGDNYGNIIHLCERDCSIQR--------R- 234 (478)
T ss_pred CCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEEeccCCcccc--------c-
Confidence 7899999999988542 35799999997 3676777777654 2 223331 1100 0
Q ss_pred ceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 243 SVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
++.. ...+ +. .+++. ..+.+.++|.++.++||+.-+| +|++++. +| ++||+|||.-++..
T Consensus 235 -----~~~~--ie~~-P~~~l~~~-----~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R~~~~ 296 (478)
T PRK08463 235 -----HQKV--IEIA-PCPSISDN-----LRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTRIQVE 296 (478)
T ss_pred -----cCce--EEEC-CCCCCCHH-----HHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCcCCC
Confidence 0000 0000 00 12111 1345788999999999988777 9999975 33 69999999888755
No 49
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.39 E-value=4.2e-11 Score=132.74 Aligned_cols=216 Identities=20% Similarity=0.351 Sum_probs=137.5
Q ss_pred cCCcEEEEecCCCC-CC------C-----------------CCCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHH
Q 019076 60 NKGISFVAIDQNRP-LS------D-----------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDA 114 (346)
Q Consensus 60 ~~Gi~~v~id~~~~-l~------~-----------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~a 114 (346)
+.|++.+.+|.+-. .+ + ...+|.|+.-..+.. ...+..-+++ .|+.++ .++++
T Consensus 587 ~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~~-~~~la~~le~-~Gi~ilG~s~e~ 664 (1068)
T PRK12815 587 KEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQT-AINLAKGLEE-AGLTILGTSPDT 664 (1068)
T ss_pred HcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcHH-HHHHHHHHHH-CCCeEECCcHHH
Confidence 88999999987631 11 0 123455554333321 1222222333 466654 67999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~ 194 (346)
+..+.||..+.+.|.+ .+|++|++..+.+ .+++.+ ....++||+|+||.... +|.+|.+++++++|.
T Consensus 665 i~~~~DK~~f~~ll~~-------~GIp~P~~~~~~s-~ee~~~--~~~~igyPvVVKP~~~~---Gg~gv~iv~~~eeL~ 731 (1068)
T PRK12815 665 IDRLEDRDRFYQLLDE-------LGLPHVPGLTATD-EEEAFA--FAKRIGYPVLIRPSYVI---GGQGMAVVYDEPALE 731 (1068)
T ss_pred HHHHcCHHHHHHHHHH-------cCcCCCCeEEeCC-HHHHHH--HHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHH
Confidence 9999999999999997 5899999998853 322222 23468999999998633 578999999999886
Q ss_pred cc-------CCCeEEEecccCCCeEEEEEEEC--CEEEE--EE-eecCCCcccchhhcccceeecccccccccccCCCCC
Q 019076 195 EL-------EPPMLLQEFVNHGGILFKIYIIG--ETIKV--VR-RFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADL 262 (346)
Q Consensus 195 ~l-------~~p~v~QEfI~h~G~~~KV~VvG--~~v~~--~~-R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~ 262 (346)
++ ..|+++|||| .|..+-|.++. +.+.+ +. +.....+.. | ++. ....+..+
T Consensus 732 ~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~dg~~v~i~~i~e~~e~~gv~s-------G----ds~----~v~pp~~l 794 (1068)
T PRK12815 732 AYLAENASQLYPILIDQFI--DGKEYEVDAISDGEDVTIPGIIEHIEQAGVHS-------G----DSI----AVLPPQSL 794 (1068)
T ss_pred HHHHHhhcCCCCEEEEEee--cCceEEEEEEEcCCceEEeeEEEEeeccCCcC-------C----Cee----EEECCCCC
Confidence 53 4689999999 47777776663 33332 11 111000000 0 000 00001112
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 263 DPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 263 ~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
++ ...+.+++++.++.++||+. +++||++++. +++||||||.-+|
T Consensus 795 ~~-----~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~---~~~yviEiNpR~s 840 (1068)
T PRK12815 795 SE-----EQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN---DEIYVLEVNPRAS 840 (1068)
T ss_pred CH-----HHHHHHHHHHHHHHHHcCCccEEEEEEEEEC---CcEEEEEEeCCCC
Confidence 11 12456899999999999965 6679999874 2699999999887
No 50
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.39 E-value=1.3e-11 Score=125.05 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=120.7
Q ss_pred HHHHHHHhCCCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccC-CCChhhHHHhhCCCCcEEEec
Q 019076 95 IIEDYRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKP 172 (346)
Q Consensus 95 ~l~~y~~~~p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~-~~~~~~~l~~~~l~fPvVvKP 172 (346)
.+|..++. -|+++ .=++.++..|+||..+-+++++ +|||||++..+..+ .+.+........++||+|+||
T Consensus 117 ~iQ~lLE~-lGIpy~gP~a~asai~mDK~~tK~l~~~-------aGIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP 188 (493)
T PRK06524 117 ETEALARQ-AGLEVMHPPAELRHRLDSKIVTTRLANE-------AGVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQT 188 (493)
T ss_pred HHHHHHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHH-------cCCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEE
Confidence 35555544 46776 6778899999999999998875 58999999875322 111112111224999999999
Q ss_pred CcCCCCCCceeeEEEeChhhhhcc-----C-CCeEEEecccCCCeEEEE--EEECCE-EEEE-EeecCCCcccchhhc-c
Q 019076 173 LVVDGSAKSHELFLAYDRFSLSEL-----E-PPMLLQEFVNHGGILFKI--YIIGET-IKVV-RRFSLPNVSKRELAK-V 241 (346)
Q Consensus 173 ~~a~GS~~sh~m~lv~~~~~L~~l-----~-~p~v~QEfI~h~G~~~KV--~VvG~~-v~~~-~R~Slp~~~~~~~~~-~ 241 (346)
.. +| .|+++.+|.++++|.++ . ..+++|+||+ |+.+-| ++-++. +... .+..++.. +... .
T Consensus 189 ~~-GG--SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~~yr 260 (493)
T PRK06524 189 PY-GD--SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELTPYR 260 (493)
T ss_pred CC-CC--CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccccccce---EEEEcc
Confidence 84 33 48999999999998764 2 4589999995 777765 544432 3221 12212210 1100 0
Q ss_pred cceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhC----CcEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 242 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLG----LRLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 242 ~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG----l~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
.|.+. ....++.+++. ..+.++++|.++.++|+ -++++||++++.++| ++|++|||.=|+=
T Consensus 261 ~G~~~--------~~i~PA~L~~e-----i~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~G 325 (493)
T PRK06524 261 GGWCG--------NDIWPGALPPA-----QTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLSG 325 (493)
T ss_pred CCeEE--------EEEccCCCCHH-----HHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCccc
Confidence 11110 00012222221 14568999999999993 455569999984333 7999999987774
No 51
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.38 E-value=1.9e-11 Score=123.72 Aligned_cols=177 Identities=12% Similarity=0.209 Sum_probs=115.3
Q ss_pred CCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|+++ -.++++++.|.||..+.+.|.+ ++|++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 98 ~Gi~~~g~~~~~~~~~~DK~~~r~~l~~-------~gip~pp~~~~~~~-~~~e~~~--~~~~ig~PvvvKP~~--g~-g 164 (449)
T TIGR00514 98 SGFTFIGPSAESIRLMGDKVSAIETMKK-------AGVPCVPGSDGLVE-DEEENVR--IAKRIGYPVIIKATA--GG-G 164 (449)
T ss_pred CCCcEECcCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccCcC-CHHHHHH--HHHHhCCCEEEEeCC--CC-C
Confidence 46654 4789999999999999999986 589998764 332 2222222 234689999999987 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-Ee-ecCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKVV-RR-FSLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~-~R-~Slp~~~~~~~~~~~ 242 (346)
|++|.++.+.++|... ..++++||||. +++.+-+-|+++ ++... .+ .+... . ..
T Consensus 165 s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~------~-~~ 236 (449)
T TIGR00514 165 GRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIE-NPRHVEIQVLADKYGNAIYLGERDCSIQR------R-HQ 236 (449)
T ss_pred CCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCC-CCeEEEEEEEEcCCCCEEEEeccccCcee------c-cc
Confidence 7899999999887642 24699999995 467777777764 23222 11 00000 0 00
Q ss_pred ceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 243 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
..+. ......+++. ..+.++++|.++.++||+.-.+ +|++++. +| .+||+|||.-++..
T Consensus 237 ~~~~---------~~p~~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g-~~~viEiNpR~~~~ 296 (449)
T TIGR00514 237 KLLE---------EAPSPALTPE-----LRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NG-EFYFMEMNTRIQVE 296 (449)
T ss_pred ceEE---------ECCCCCCCHH-----HHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CC-CEEEEEEECCCCCC
Confidence 0000 0000011110 2356889999999999997554 9999974 23 58999999888643
No 52
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.37 E-value=3.7e-11 Score=122.44 Aligned_cols=185 Identities=12% Similarity=0.177 Sum_probs=118.6
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCChhhHHHhhCCCCcEEEecCc
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLV 174 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~fPvVvKP~~ 174 (346)
.+..++ -|++++ .++++++.+.||..+.+.+.+ .+||+|++... -.+.++..+ ....++||+|+||..
T Consensus 91 a~~~e~-~Gi~~igps~~~i~~~~DK~~~r~~l~~-------~GIp~pp~~~~~~~~~~e~~~--~~~~igyPvvvKp~~ 160 (472)
T PRK07178 91 AEICAE-RGIKFIGPSAEVIRRMGDKTEARRAMIK-------AGVPVTPGSEGNLADLDEALA--EAERIGYPVMLKATS 160 (472)
T ss_pred HHHHHH-cCCCccCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCCcCcCCCCHHHHHH--HHHHcCCcEEEEeCC
Confidence 334443 466654 668999999999999999986 58999877532 112222222 235689999999987
Q ss_pred CCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---E-EEEEeecCCCcccch
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---I-KVVRRFSLPNVSKRE 237 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v-~~~~R~Slp~~~~~~ 237 (346)
|+ +|.+|.++.++++|.+. ..++++|+||. +++.+-|-|+++. + .+..|.- .+
T Consensus 161 --gg-Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~eiev~v~~d~~G~~v~~~er~~--s~---- 230 (472)
T PRK07178 161 --GG-GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPKHIEVQILADSHGNVVHLFERDC--SI---- 230 (472)
T ss_pred --CC-CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCeEEEEEEEEECCCCEEEEEcccc--ce----
Confidence 44 57999999999998642 34799999996 5777777777643 2 2222210 00
Q ss_pred hhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCC
Q 019076 238 LAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 238 ~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
. ..+... ........+++. ..+.+.++|.++.++||+.-.| +|++++.+ | ++||+|||.-++-
T Consensus 231 -~------~~~~~~--~e~~P~~~l~~~-----~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~y~iEiNpRl~~ 294 (472)
T PRK07178 231 -Q------RRNQKL--IEIAPSPQLTPE-----QRAYIGDLAVRAAKAVGYENAGTVEFLLDAD-G-EVYFMEMNTRVQV 294 (472)
T ss_pred -E------ecCcce--EEECCCCCCCHH-----HHHHHHHHHHHHHHHcCCCceeEEEEEEeCC-C-CEEEEEEeCCcCC
Confidence 0 000000 000000011111 1356789999999999996655 99999743 3 6999999988765
Q ss_pred C
Q 019076 317 G 317 (346)
Q Consensus 317 ~ 317 (346)
.
T Consensus 295 ~ 295 (472)
T PRK07178 295 E 295 (472)
T ss_pred C
Confidence 4
No 53
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.37 E-value=2.8e-11 Score=134.28 Aligned_cols=221 Identities=16% Similarity=0.222 Sum_probs=140.0
Q ss_pred cCCcEEEEecCCCCC-------C-----------------CCCCccEEEEcccchhhH---HHHH--HHHHhCCCeeee-
Q 019076 60 NKGISFVAIDQNRPL-------S-----------------DQGPFDVVLHKLSGMEWC---KIIE--DYRQKHPEVTIL- 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-------~-----------------~q~~fDvilhK~t~~~~~---~~l~--~y~~~~p~v~VI- 109 (346)
+.|++++.+|.+..- . ++..+|+|+.-+.++... ..+. ..+++ -|+.++
T Consensus 39 e~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~-~Gv~~~g 117 (1066)
T PRK05294 39 EEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEK-YGVELIG 117 (1066)
T ss_pred HcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHH-CCCEEEC
Confidence 789999999875421 0 123567777765443211 1121 12233 466665
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
-++++++.+.||..+.+.|.+ .|||+|++..+.+ .+++.+ ....++||+|+||.. |. +|+++.++.+
T Consensus 118 ~~~~~i~~~~DK~~~k~~l~~-------~Gipvp~~~~v~s-~~e~~~--~~~~ig~PvVVKP~~--g~-gg~Gv~iv~~ 184 (1066)
T PRK05294 118 AKLEAIDKAEDRELFKEAMKK-------IGLPVPRSGIAHS-MEEALE--VAEEIGYPVIIRPSF--TL-GGTGGGIAYN 184 (1066)
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------CCcCCCCeeeeCC-HHHHHH--HHHHcCCCeEEEcCC--CC-CCCCeEEECC
Confidence 578999999999999999986 5899999998853 322322 234689999999985 43 6789999999
Q ss_pred hhhhhcc---------CCCeEEEecccCCC-eEEEEEEECC---EEEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 190 RFSLSEL---------EPPMLLQEFVNHGG-ILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 190 ~~~L~~l---------~~p~v~QEfI~h~G-~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
+++|... ..++++||||+ | ..+-+-|+.+ .+..+. +..+++..... .++. .. .
T Consensus 185 ~eeL~~a~~~~~~~s~~~~vlvEe~I~--G~~Eisv~v~rd~~g~~~~~~--~~e~~dp~gih-~g~~-----~~----~ 250 (1066)
T PRK05294 185 EEELEEIVERGLDLSPVTEVLIEESLL--GWKEYEYEVMRDKNDNCIIVC--SIENIDPMGVH-TGDS-----IT----V 250 (1066)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEccc--CceEEEEEEEEcCCCCEEEEe--eeeecccccee-cCCe-----EE----E
Confidence 9998653 24799999995 5 5777777644 232221 11111100000 0000 00 0
Q ss_pred cCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 257 ADDA-DLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 257 ~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~--lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+ ++ .+++ ...+.++++|.++.++||+. .++||+..+..+| ++||+|||.-++
T Consensus 251 ~-Pa~~l~~-----~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 251 A-PAQTLTD-----KEYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred e-CCCCCCH-----HHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 0 11 1110 11346899999999999997 7789999975334 799999995554
No 54
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.36 E-value=3.7e-11 Score=120.47 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=80.4
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcC
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV 175 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a 175 (346)
.+..++ .|++++ .++++++.+.||..|-+.|++ ++||+|++..+. +.+++.+. ...++||+|+||..
T Consensus 79 ~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~~~--~~~~~~P~VvKP~~- 146 (420)
T PRK00885 79 VDAFRA-AGLPIFGPTKAAAQLEGSKAFAKDFMAR-------YGIPTAAYETFT-DAEEALAY--LDEKGAPIVVKADG- 146 (420)
T ss_pred HHHHHH-CCCcEECcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEEeC-CHHHHHHH--HHHcCCCEEEEeCC-
Confidence 333443 467766 567899999999999999996 589999998874 33323222 24589999999975
Q ss_pred CCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC
Q 019076 176 DGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 176 ~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
|+ +|.++.++.+.+++.+. ..++++||||+ |..|-|.++.+
T Consensus 147 -~~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 147 -LA-AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred -CC-CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 33 67899999999887541 24799999995 78888877743
No 55
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.36 E-value=3.2e-11 Score=133.52 Aligned_cols=221 Identities=16% Similarity=0.240 Sum_probs=140.1
Q ss_pred cCCcEEEEecCCCCC-------C-----------------CCCCccEEEEcccchh--hHH-HH--HHHHHhCCCeeee-
Q 019076 60 NKGISFVAIDQNRPL-------S-----------------DQGPFDVVLHKLSGME--WCK-II--EDYRQKHPEVTIL- 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-------~-----------------~q~~fDvilhK~t~~~--~~~-~l--~~y~~~~p~v~VI- 109 (346)
+.|++++.+|.+..- . .+..+|+|+.-+.++. ++. .+ ....++ -|+.++
T Consensus 38 e~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~-~Gv~~~G 116 (1050)
T TIGR01369 38 EEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEK-YGVEVLG 116 (1050)
T ss_pred HcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHH-CCCEEEC
Confidence 889999999886421 0 1245788877544322 111 11 122233 467665
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
.+++++..+.||..+.+.|.+ .++|+|++..+.+ .++..+ ....++||+|+||.. |+ +|.++.++.|
T Consensus 117 ~~~~ai~~~~DK~~~k~~l~~-------~Gipvp~~~~v~s-~~e~~~--~~~~igyPvIVKP~~--g~-gg~Gv~iv~~ 183 (1050)
T TIGR01369 117 TPVEAIKKAEDRELFREAMKE-------IGEPVPESEIAHS-VEEALA--AAKEIGYPVIVRPAF--TL-GGTGGGIAYN 183 (1050)
T ss_pred CCHHHHHHhCCHHHHHHHHHH-------CCCCCCCeeecCC-HHHHHH--HHHHhCCCeEEECCC--CC-CCCCeEEECC
Confidence 779999999999999999996 5899999998853 222222 234689999999985 43 6789999999
Q ss_pred hhhhhcc-----C----CCeEEEecccCCC-eEEEEEEECC---EEEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 190 RFSLSEL-----E----PPMLLQEFVNHGG-ILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 190 ~~~L~~l-----~----~p~v~QEfI~h~G-~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
+++|... . .++++||||+ | ..+-+-|+++ .+.++ .+..++++....+. +. +. .
T Consensus 184 ~eeL~~~~~~~~~~s~~~~vlVEe~I~--G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~gvh~g-~~-----i~----v 249 (1050)
T TIGR01369 184 REELKEIAERALSASPINQVLVEKSLA--GWKEIEYEVMRDSNDNCITV--CNMENFDPMGVHTG-DS-----IV----V 249 (1050)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEccc--CceEEEEEEEEeCCCCEEEE--eeceeccCcceecC-ce-----EE----E
Confidence 9998653 1 4799999996 5 5777777644 22221 11112111000000 00 00 0
Q ss_pred cCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccCCCC
Q 019076 257 ADDA-DLDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 257 ~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-fGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+ ++ .+++ .....++++|.++.++||+.- ++||++.+.++| ++||+|||.-++
T Consensus 250 ~-Pa~tl~~-----~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~ 303 (1050)
T TIGR01369 250 A-PSQTLTD-----KEYQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVS 303 (1050)
T ss_pred e-cCCCCCH-----HHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCcC
Confidence 0 11 1111 013458999999999999974 459999975334 799999997766
No 56
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.34 E-value=4.5e-11 Score=120.80 Aligned_cols=178 Identities=13% Similarity=0.187 Sum_probs=115.5
Q ss_pred CCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|+++ -.++++++.+.||..|.+.+.+ .+|++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 98 ~gi~~~g~~~~~~~~~~DK~~~r~~l~~-------~gIp~pp~~~~~v~-~~~~~~~--~~~~~g~PvvvKP~~--g~-g 164 (451)
T PRK08591 98 SGFTFIGPSAETIRLMGDKVTAKATMKK-------AGVPVVPGSDGPVD-DEEEALA--IAKEIGYPVIIKATA--GG-G 164 (451)
T ss_pred CCCceECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEECC--CC-C
Confidence 45654 4789999999999999999996 589998763 332 2222222 234689999999987 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EeecCCCcccchhhcccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRFSLPNVSKRELAKVVS 243 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~-~R~Slp~~~~~~~~~~~g 243 (346)
|.++.++.++++|.+. ...+++||||. +++.+-+-+++|. +... .|. . .+ .
T Consensus 165 s~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~-~-~~-----~---- 232 (451)
T PRK08591 165 GRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE-NPRHIEIQVLADGHGNAIHLGERD-C-SL-----Q---- 232 (451)
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeccc-c-cc-----e----
Confidence 7899999999987642 24699999996 3667777777543 3222 110 0 00 0
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
..+.... .......+++ ...+.+.++|.++.++||+.-.+ ||++.+. +| ++||+|||.-++..
T Consensus 233 --~~~~~~~--~~~p~~~l~~-----~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~~~ 296 (451)
T PRK08591 233 --RRHQKVL--EEAPSPAITE-----ELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQVE 296 (451)
T ss_pred --ecceeEE--EECCCCCCCH-----HHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCCcc
Confidence 0000000 0000001111 12456899999999999987554 9999974 33 69999999888644
No 57
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.33 E-value=8.6e-11 Score=130.13 Aligned_cols=177 Identities=12% Similarity=0.190 Sum_probs=119.3
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
.|+.++ .++++++.|.||..+.+.+.+ .+||+|++... ..+.+++.+ ....++||+|+||.. |+ +|
T Consensus 98 ~Gi~fiGps~e~i~~~~DK~~ar~la~~-------~GVPvpp~t~~~v~~~eea~~--~ae~iGyPvIVKP~~--GG-GG 165 (1143)
T TIGR01235 98 AGIIFIGPKAEVMDQLGDKVAARNLAIK-------AGVPVVPGTDGPPETMEEVLD--FAAAIGYPVIIKASW--GG-GG 165 (1143)
T ss_pred cCCcccCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccCcCCHHHHHH--HHHHcCCCEEEEECC--CC-CC
Confidence 466655 568999999999999999886 58999886521 122222222 234689999999976 43 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhcccc
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~~g 243 (346)
++|.++.++++|... +.++++|+||+ +++.+.|-|+|+. ++.+.|. |...
T Consensus 166 rG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~reIeVqVlgD~~G~vv~l~eRdcsvqr----------- 233 (1143)
T TIGR01235 166 RGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RPRHIEVQLLGDKHGNVVHLFERDCSVQR----------- 233 (1143)
T ss_pred CccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CCeEEEEEEEEeCCCCEEEEEeccccccc-----------
Confidence 899999999887542 35799999996 4788999999775 3334442 1110
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.++... ..+ ++ .+++ ...+.+.++|.++.++||..-+| ||++++.+ | ++|++|||.-++..
T Consensus 234 ---r~qk~i--e~a-Pa~~L~~-----e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~d-g-~~yfIEVNPRiqve 296 (1143)
T TIGR01235 234 ---RHQKVV--EVA-PAPYLSR-----EVRDEIAEYAVKLAKAVNYINAGTVEFLVDND-G-KFYFIEVNPRIQVE 296 (1143)
T ss_pred ---cCceEE--EEe-CCCCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEeCC-C-cEEEEEeecCCCcc
Confidence 000000 000 10 1111 12356899999999999987666 99999753 3 69999999988754
No 58
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.33 E-value=1.1e-10 Score=117.85 Aligned_cols=210 Identities=13% Similarity=0.073 Sum_probs=123.1
Q ss_pred HHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 95 IIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 95 ~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+.+.+++ -|++++ -+.++++.+.||..+-+.|.+ ++||||++..+. +.+++.+. ...++||+|+||.
T Consensus 77 ~~~d~l~~-~Gi~~~Gps~~aa~l~~dK~~~K~~l~~-------~GIptp~~~~~~-~~~e~~~~--~~~~g~PvVVKp~ 145 (434)
T PLN02257 77 GLADDLVK-AGIPTFGPSAEAAALEGSKNFMKDLCDK-------YKIPTAKYETFT-DPAAAKKY--IKEQGAPIVVKAD 145 (434)
T ss_pred HHHHHHHH-CCCCEECChHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEEeC-CHHHHHHH--HHHcCCCEEEEcC
Confidence 34444443 367765 667899999999999999986 699999998774 33323222 2468999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC--EEEEEEeecCCCcccchh
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKREL 238 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~--~v~~~~R~Slp~~~~~~~ 238 (346)
. |+ .|.+|.++.+.+++.+. ..++++||||. |..+-|.++.| .+.... .+.+
T Consensus 146 ~--~~-~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~~~pl~----~~~d---- 212 (434)
T PLN02257 146 G--LA-AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGENAIPLE----SAQD---- 212 (434)
T ss_pred C--CC-CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCcEEEEE----eeee----
Confidence 3 32 57899999998876431 25799999995 88888866533 222211 1100
Q ss_pred hcccceeecccccccccccCCCCCCCCCCCCCChHHH----HHHHH---HHHHHhCCcEeE---EEEEEecCcCCeEEEE
Q 019076 239 AKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLL----ERLAR---ELRHRLGLRLFN---IDMIREHGMRDVFYVI 308 (346)
Q Consensus 239 ~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~----~~lA~---~l~~~lGl~lfG---vDvi~~~~~g~~~~Vi 308 (346)
...+|+++...+.+. .+...|. ..++ .+.. ++++. +.-++.|+.+.| +|++++...| ++||+
T Consensus 213 --hkr~~d~d~g~ntgg---mg~~sp~-p~l~-~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vL 284 (434)
T PLN02257 213 --HKRVGDGDTGPNTGG---MGAYSPA-PVLT-PELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLL 284 (434)
T ss_pred --cccccCCCCCCCCCC---CeeEecC-CCCC-HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEE
Confidence 011222222221110 0111111 0011 2222 33332 333577887666 7988862223 59999
Q ss_pred eccCCCCCCCCc----ccHHHHHHHHHHHHHh
Q 019076 309 DINYFPGYGKMP----DYEHIFTDFLLSLEQS 336 (346)
Q Consensus 309 DVN~fPg~~gv~----~~~~~l~~~l~~~i~~ 336 (346)
|+|.-||...-. .+..-|.+.+...+..
T Consensus 285 E~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g 316 (434)
T PLN02257 285 EYNVRFGDPECQVLMMRLESDLAQVLLAACKG 316 (434)
T ss_pred EEECCCCCCchheEehhhcCCHHHHHHHHHcC
Confidence 999999964222 2223355555555554
No 59
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.30 E-value=1.2e-10 Score=129.23 Aligned_cols=223 Identities=17% Similarity=0.237 Sum_probs=139.5
Q ss_pred cCCcEEEEecCCCCC-------C-----------------CCCCccEEEEcccchhhH---HHHH-H-HHHhCCCeeee-
Q 019076 60 NKGISFVAIDQNRPL-------S-----------------DQGPFDVVLHKLSGMEWC---KIIE-D-YRQKHPEVTIL- 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-------~-----------------~q~~fDvilhK~t~~~~~---~~l~-~-y~~~~p~v~VI- 109 (346)
+.|++++.+|.+... . ....+|+|+.=+.++... ..+. + .+++ -|+.++
T Consensus 39 e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~-~gv~l~g 117 (1068)
T PRK12815 39 EEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQ-YGVELLG 117 (1068)
T ss_pred HcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHH-CCCEEEC
Confidence 789999998875421 0 123578887754432221 1111 1 2333 467665
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
-+++++..+.||..+-+.|.+ .|||+|++..+.+ .+++.+ ....++||+|+||.. |. +|.++.++.|
T Consensus 118 ~~~~~i~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s-~ee~~~--~~~~igyPvVVKP~~--g~-gG~Gv~iv~~ 184 (1068)
T PRK12815 118 TNIEAIQKGEDRERFRALMKE-------LGEPVPESEIVTS-VEEALA--FAEKIGFPIIVRPAY--TL-GGTGGGIAEN 184 (1068)
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------cCcCCCCceeeCC-HHHHHH--HHHHcCCCEEEEECc--CC-CCCceEEECC
Confidence 578999999999999999986 5899999998853 222222 234689999999986 33 5688999999
Q ss_pred hhhhhcc---------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 190 RFSLSEL---------EPPMLLQEFVNHGG-ILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 190 ~~~L~~l---------~~p~v~QEfI~h~G-~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
+++|... ..++++||||+ | ..+-|-|+.|. +..+. +..+++.....+ | +.+. .
T Consensus 185 ~eEL~~a~~~~~~~s~~~~vLVEe~I~--G~~E~sv~v~rD~~g~~~~~~--~~e~~~p~gi~t--G----~s~~----v 250 (1068)
T PRK12815 185 LEELEQLFKQGLQASPIHQCLLEESIA--GWKEIEYEVMRDRNGNCITVC--NMENIDPVGIHT--G----DSIV----V 250 (1068)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEccC--CCeEEEEEEEEcCCCCEEEEE--eceecccccccC--C----ceEE----E
Confidence 9988653 14799999995 5 57888888653 32211 111211111100 0 0000 0
Q ss_pred cCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 257 ADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 257 ~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.++ .+++ .....++++|.++.++||+. .++||+..+.++| ++||+||| |.+.+.
T Consensus 251 -~Pa~~l~~-----~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g-~~~ViEIN--PR~~~s 306 (1068)
T PRK12815 251 -APSQTLTD-----DEYQMLRSASLKIISALGVVGGCNIQFALDPKSK-QYYLIEVN--PRVSRS 306 (1068)
T ss_pred -ecCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCC-cEEEEEEe--cCcccc
Confidence 011 1110 01345889999999999994 4569999975333 79999999 555443
No 60
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.28 E-value=1.1e-10 Score=117.67 Aligned_cols=178 Identities=14% Similarity=0.219 Sum_probs=112.9
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|++++ .++++++.+.||..|.+.|.+ ++|++|++... ..+.+++.+ ....++||+|+||.. |+ +|
T Consensus 98 ~g~~~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~~~~~~e~~~--~~~~~~~P~VvKP~~--g~-gs 165 (450)
T PRK06111 98 EGIVFIGPSADIIAKMGSKIEARRAMQA-------AGVPVVPGITTNLEDAEEAIA--IARQIGYPVMLKASA--GG-GG 165 (450)
T ss_pred CCCeEECCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcCcCcCCHHHHHH--HHHHhCCCEEEEeCC--CC-CC
Confidence 456654 668999999999999999996 58999986322 122222222 134689999999986 43 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EeecCCCcccchhhcccce
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKVV-RRFSLPNVSKRELAKVVSV 244 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~-~R~Slp~~~~~~~~~~~g~ 244 (346)
+++.++.+.++|.+. ..++++||||. ++..+-+.++++ .+... .+.. + +. ......
T Consensus 166 ~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~g~~~~~~~~~~-~-~~----~~~~~~ 238 (450)
T PRK06111 166 IGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE-DPRHIEIQLLADTHGNTVYLWEREC-S-VQ----RRHQKV 238 (450)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC-CCcEEEEEEEEcCCCCEEEEEeecc-c-cc----ccccce
Confidence 899999999887542 35799999996 345666655543 23322 2210 0 00 000000
Q ss_pred eecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 245 FRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 245 ~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
.. ... ...+++ .....++++|.++.++||+. ++.+|++.+.+ | ++||+|||.-++.
T Consensus 239 ~~-----~~p----~~~~~~-----~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~-g-~~~viEiN~R~~~ 295 (450)
T PRK06111 239 IE-----EAP----SPFLDE-----ETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQ-K-NFYFLEMNTRLQV 295 (450)
T ss_pred EE-----ecC----CCCCCH-----HHHHHHHHHHHHHHHHcCCCCceeEEEEEcCC-C-CEEEEEEECCcCC
Confidence 00 000 000111 12356889999999999995 55599999753 3 5999999988864
No 61
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.27 E-value=3.5e-10 Score=113.32 Aligned_cols=187 Identities=10% Similarity=0.086 Sum_probs=114.1
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCc-EEEecC
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPL 173 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fP-vVvKP~ 173 (346)
+.+..++ -+++++ .++++++.+.||..|.+.|.+ .+||+|++..+. +.+++.+. ...++|| +|+||.
T Consensus 80 ~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~-~~~~~~~~--~~~~g~P~~VvKp~ 148 (423)
T TIGR00877 80 LVDALEE-AGIPVFGPTKEAAQLEGSKAFAKDFMKR-------YGIPTAEYEVFT-DPEEALSY--IQEKGAPAIVVKAD 148 (423)
T ss_pred HHHHHHH-CCCeEECCCHHHHHHHCCHHHHHHHHHH-------CCCCCCCeEEEC-CHHHHHHH--HHhcCCCeEEEEEC
Confidence 3344444 356655 678899999999999999986 589999999885 33223222 2468999 999997
Q ss_pred cCCCCCCceeeEEEeChhhhhcc------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EeecCCCcccch
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL------------EPPMLLQEFVNHGGILFKIYII--GETIKVV--RRFSLPNVSKRE 237 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l------------~~p~v~QEfI~h~G~~~KV~Vv--G~~v~~~--~R~Slp~~~~~~ 237 (346)
. |+ +|.++.++.+.+++.+. ..++++||||+ |..|-|.++ |+.+.+. .|.-..... ++
T Consensus 149 ~--~~-gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~~~-~~ 222 (423)
T TIGR00877 149 G--LA-AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD--GEEVSLLAFVDGKTVIPMPPAQDHKRALE-GD 222 (423)
T ss_pred C--CC-CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc--CceEEEEEEEcCCeEEeceeeeeeeeccc-CC
Confidence 5 33 57899999999886541 24799999995 788887776 4444321 111000000 00
Q ss_pred hhcccceeecccccccccccCCCCCCCCCCCCCC---hHHHHHHHHHHHHHhC------CcEeEEEEEEecCcCCeEEEE
Q 019076 238 LAKVVSVFRFPRVSSAAASADDADLDPGIAELPP---RPLLERLARELRHRLG------LRLFNIDMIREHGMRDVFYVI 308 (346)
Q Consensus 238 ~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~---~~~~~~lA~~l~~~lG------l~lfGvDvi~~~~~g~~~~Vi 308 (346)
.+. + .++ .+...|. ..++. .+..++++..+.++|+ -.++.+|++++.+ ++||+
T Consensus 223 ----~~~---~---~g~----~~~~~p~-~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~---g~~vi 284 (423)
T TIGR00877 223 ----KGP---N---TGG----MGAYSPA-PVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKE---GPKVL 284 (423)
T ss_pred ----CCC---C---CCC----CceecCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECC---CcEEE
Confidence 000 0 000 0011111 01111 1223456666666663 2567799999742 38999
Q ss_pred eccCCCCCC
Q 019076 309 DINYFPGYG 317 (346)
Q Consensus 309 DVN~fPg~~ 317 (346)
|||.-+|-.
T Consensus 285 Ein~R~g~~ 293 (423)
T TIGR00877 285 EFNCRFGDP 293 (423)
T ss_pred EEEccCCCc
Confidence 999999844
No 62
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.26 E-value=2.2e-11 Score=106.75 Aligned_cols=151 Identities=22% Similarity=0.294 Sum_probs=77.6
Q ss_pred hcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-
Q 019076 118 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL- 196 (346)
Q Consensus 118 l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l- 196 (346)
|.||+.+++.|.+ .+|++|.++.... .....+|+|+||..++ +|.++.++.+.+++...
T Consensus 1 ~~dK~~~~~~L~~-------~gi~~P~~~~~~~----------~~~~~~~~viKp~~G~---Gg~~i~~~~~~~~~~~~~ 60 (161)
T PF02655_consen 1 CSDKLKTYKFLKE-------LGIPVPTTLRDSE----------PEPIDGPWVIKPRDGA---GGEGIRIVDSEDELEEFL 60 (161)
T ss_dssp -TSHHHHHHHHTT-------T-S--------EE----------SS--SSSEEEEESS----------B--SS--TTE---
T ss_pred CCCHHHHHHHHHc-------cCCCCCCcccccc----------ccccCCcEEEEeCCCC---CCCCeEEECCchhhcccc
Confidence 6899999999996 5899995443321 1123789999999844 56889999999888754
Q ss_pred CCCeEEEecccCCCeEEEEEEECCE----EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCCh
Q 019076 197 EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPR 272 (346)
Q Consensus 197 ~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~ 272 (346)
..-.++||||+ |.-+-+.++.+. +.++.|..+..-. ..|.| +++ .. + + ..+..
T Consensus 61 ~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~--------~~~~~----~G~-~~-~--~-----~~~~~ 117 (161)
T PF02655_consen 61 NKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDD--------GRFRY----CGG-IV-P--A-----DTPLK 117 (161)
T ss_dssp ----EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEE----EEE-EE-S-----------HH
T ss_pred ccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhcccc--------ceeee----ccc-cc-c--c-----CCchH
Confidence 33349999995 898888777533 3445665432100 00111 000 00 0 1 11225
Q ss_pred HHHHHHHHHHHHHh-CCc-EeEEEEEEecCcCCeEEEEeccCCC
Q 019076 273 PLLERLARELRHRL-GLR-LFNIDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 273 ~~~~~lA~~l~~~l-Gl~-lfGvDvi~~~~~g~~~~ViDVN~fP 314 (346)
+.+.++|.+++++| ||. ++|||+|.+. +++||||||-=|
T Consensus 118 ~~~~~~~~~i~~~l~gl~G~~giD~I~~~---~~~~viEINPR~ 158 (161)
T PF02655_consen 118 EEIIELARRIAEALPGLRGYVGIDFILDD---GGPYVIEINPRF 158 (161)
T ss_dssp HHHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEESS-
T ss_pred HHHHHHHHHHHHHcCCCeeeEeEEEEEeC---CcEEEEEEcCCC
Confidence 67999999999999 875 5589999875 369999999644
No 63
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.26 E-value=2.4e-10 Score=115.14 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=78.8
Q ss_pred HHHHHHhCCCeeeeChH-HHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCc
Q 019076 96 IEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 174 (346)
Q Consensus 96 l~~y~~~~p~v~VIDp~-~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~ 174 (346)
+.+..++ -|++++-|. .+.+.+.||..+-+.|.+ ++||||++..+. +.+++.+. ...++||+|+||..
T Consensus 84 lad~~~~-~Gip~~Gp~~~aa~le~dK~~~K~~l~~-------~gIpt~~~~~~~-~~~ea~~~--~~~~~~PvVVKp~~ 152 (426)
T PRK13789 84 FADWAAE-LGIPCFGPDSYCAQVEGSKHFAKSLMKE-------AKIPTASYKTFT-EYSSSLSY--LESEMLPIVIKADG 152 (426)
T ss_pred HHHHHHH-cCCCcCCCHHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEeeC-CHHHHHHH--HHhcCCCEEEEeCC
Confidence 3333333 467777554 477888999999999996 589999998774 33323222 23589999999973
Q ss_pred CCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
++.|.+|.++.+.+++.+. ...+++||||. |..+-|.++.+
T Consensus 153 ---~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~--G~E~Sv~~~~d 206 (426)
T PRK13789 153 ---LAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME--GQEASIFAISD 206 (426)
T ss_pred ---CCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC--CeEEEEEEEEC
Confidence 3367999999999876541 12699999994 89999888754
No 64
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.23 E-value=3.5e-10 Score=125.72 Aligned_cols=178 Identities=16% Similarity=0.219 Sum_probs=116.5
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE-EccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV-ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~-i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|+.++ .++++++.|.||..+.+.+.+ ++||+|++.. .-.+.+++.+ ....++||+|+||.. |+ +|
T Consensus 102 ~Gi~fiGps~eai~~~~DK~~~r~~l~~-------~GVPv~P~~~~~v~s~eea~~--~a~~iGyPvVVKP~~--Gg-GG 169 (1146)
T PRK12999 102 AGITFIGPTAEVLRLLGDKVAARNAAIK-------AGVPVIPGSEGPIDDIEEALE--FAEEIGYPIMLKASA--GG-GG 169 (1146)
T ss_pred cCCcccCCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccCCCCHHHHHH--HHHHhCCCEEEEECC--CC-CC
Confidence 456644 678999999999999999986 5899876553 2122222222 235689999999987 43 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEee-cCCCcccchhhcccc
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~-~~~R~-Slp~~~~~~~~~~~g 243 (346)
++|.++.++++|... +.++++|+||+ +++.+-|-++|+. +. ...|- |... . ...
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g~~~ieVqvl~D~~G~vv~l~erdcsvqr------r-~qk 241 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-NPRHIEVQILGDKHGNVVHLYERDCSVQR------R-HQK 241 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-CCeEEEEEEEEECCCCEEEEEccccceee------c-Ccc
Confidence 999999999987542 35799999997 4566777777643 22 22221 1100 0 000
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
... .+....+++ ...+.+.++|.++.+++|+.-.| +|++++.+ | ++|+||||.-++..
T Consensus 242 ~ie---------~aP~~~L~~-----~~~~~l~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEINpRlqve 300 (1146)
T PRK12999 242 VVE---------IAPAPGLSE-----ELRERICEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVNPRIQVE 300 (1146)
T ss_pred EEE---------EcCCCCCCH-----HHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEECCCCCc
Confidence 000 000001111 12456889999999999997766 99999853 3 69999999887643
No 65
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.22 E-value=8.8e-10 Score=107.19 Aligned_cols=186 Identities=19% Similarity=0.255 Sum_probs=129.2
Q ss_pred ccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHH
Q 019076 80 FDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQV 159 (346)
Q Consensus 80 fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l 159 (346)
.|+++.+.......++-.+|.+..-.+.+--+.++++.+.||..+++.+++ ++|++|++..+. +.+++..
T Consensus 67 Idv~~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~-------~~ipvp~~~~v~-t~~el~~-- 136 (329)
T PF15632_consen 67 IDVFVPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEA-------NGIPVPPYWRVR-TADELKA-- 136 (329)
T ss_pred CeEEEcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHh-------CCCCCCCEEEeC-CHHHHHH--
Confidence 466666665544445556665543223333568999999999999999996 689999999985 3333333
Q ss_pred HhhCCCCc---EEEecCcCCCCCCceeeEEEe-Chhhhhcc----------------------CCCeEEEecccCCCeEE
Q 019076 160 FEAGLKLP---LVAKPLVVDGSAKSHELFLAY-DRFSLSEL----------------------EPPMLLQEFVNHGGILF 213 (346)
Q Consensus 160 ~~~~l~fP---vVvKP~~a~GS~~sh~m~lv~-~~~~L~~l----------------------~~p~v~QEfI~h~G~~~ 213 (346)
+.+.+++| +.+||..+. ++.|..++. +.+++..+ -+|++++||+ +|..|
T Consensus 137 a~~~l~~~~~~~CvKP~~g~---gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL--~G~Ey 211 (329)
T PF15632_consen 137 AYEELRFPGQPLCVKPAVGI---GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYL--PGPEY 211 (329)
T ss_pred HHHhcCCCCceEEEecccCC---CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCC--CCCeE
Confidence 23456666 999999844 568899998 44444432 2579999999 58888
Q ss_pred EEEEEC--CEEE-EEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-
Q 019076 214 KIYIIG--ETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR- 289 (346)
Q Consensus 214 KV~VvG--~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~- 289 (346)
-|=|+. +++. ++.|+-.. . . ..+. .++.+.++|.++++.+||+
T Consensus 212 SVD~l~~~G~viaaV~R~K~G-~-----~--------------------q~l~-------~~~~l~e~a~~l~~~~~l~g 258 (329)
T PF15632_consen 212 SVDCLADEGRVIAAVPRRKLG-R-----R--------------------QVLE-------NDEELIELARRLAEAFGLDG 258 (329)
T ss_pred EEEEEecCCEEEEEEEEEecC-c-----e--------------------eEEE-------ECHHHHHHHHHHHHHhCCCc
Confidence 877774 4454 56665431 1 0 0110 1355899999999999997
Q ss_pred EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 290 LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 290 lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
++||++..|. .| .++++|||.=|+
T Consensus 259 ~~NiQ~r~d~-~g-~p~LLEINpR~s 282 (329)
T PF15632_consen 259 LFNIQFRYDE-DG-NPKLLEINPRPS 282 (329)
T ss_pred eEEEEEEEcC-CC-CEEEEEeCCCCc
Confidence 5689999864 34 699999998876
No 66
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.21 E-value=1.4e-09 Score=109.84 Aligned_cols=177 Identities=10% Similarity=0.037 Sum_probs=108.0
Q ss_pred Ceeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE-EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 105 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 105 ~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~-~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
|++++ .+.++++.+.||..|.+.|.+ ++|++|+++ ...+. .+... ....++||+|+||.. + +.|.
T Consensus 89 Gi~v~gps~~~a~~e~dK~~~k~~l~~-------~gIptp~~~~~~~~~-~e~~~--~~~~~~~PvVVKP~~--~-sggk 155 (435)
T PRK06395 89 GIKVASPTMEAAMIETSKMFMRYLMER-------HNIPGNINFNACFSE-KDAAR--DYITSMKDVAVKPIG--L-TGGK 155 (435)
T ss_pred CCcEECCCHHHHHHhhCHHHHHHHHHH-------CCcCCCcccceeCCh-HHHHH--HHHhhCCCEEEEeCC--C-CCCC
Confidence 67776 889999999999999999996 689998654 44322 22212 123468999999975 3 3678
Q ss_pred eeEEEeCh----hh-hh---c---cCCCeEEEecccCCCeEEEEEEE--CCEEEEE------EeecCCCcccchhhcccc
Q 019076 183 ELFLAYDR----FS-LS---E---LEPPMLLQEFVNHGGILFKIYII--GETIKVV------RRFSLPNVSKRELAKVVS 243 (346)
Q Consensus 183 ~m~lv~~~----~~-L~---~---l~~p~v~QEfI~h~G~~~KV~Vv--G~~v~~~------~R~Slp~~~~~~~~~~~g 243 (346)
+|.++.+. ++ +. + ...++|+|||+ .|..|-|.++ |+.++.. .|-.-.+. ..+.|
T Consensus 156 GV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl--~G~E~Svd~~~dg~~~~~l~~~~d~~r~~~~d~-----gp~tG 228 (435)
T PRK06395 156 GVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKM--TGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDH-----GPNTG 228 (435)
T ss_pred CeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeec--CCceEEEEEEEcCCeEEEecccceeeecccCCC-----CCccC
Confidence 99999542 22 22 1 13579999999 4777765444 6665431 11110000 00000
Q ss_pred eeecccccccccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCC------cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 244 VFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGL------RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl------~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
. .++.++....-|. ++ ..+.+++++.++.++||. .++.+++++.. ++++|||+|.=+|
T Consensus 229 -------g-mG~~s~~~~~~p~---l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~---~gp~ViE~n~R~g 294 (435)
T PRK06395 229 -------G-MGSISDRDFSLPF---LSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP---NGVKVIEINARFA 294 (435)
T ss_pred -------C-CccccCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC---CCcEEEEEeCCCC
Confidence 0 0111100000010 11 134568899999999994 55679999864 2589999998888
No 67
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.16 E-value=3.8e-09 Score=118.07 Aligned_cols=177 Identities=17% Similarity=0.247 Sum_probs=116.3
Q ss_pred CCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCc-EEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR-QMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~-~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|+++ -.++++++.+.||..+-+.+.+ ++||+|+ +.++. +.+++.+ ....++||+|+||.. |+ +|
T Consensus 97 ~Gi~~iGps~ea~~~~~DK~~ar~ll~~-------~GVPt~p~~~lv~-s~dea~~--~a~~igyPvVVKP~~--gg-GG 163 (1201)
T TIGR02712 97 AGIVFVGPTPEQIRKFGLKHTARELAEA-------AGVPLLPGTGLLS-SLDEALE--AAKEIGYPVMLKSTA--GG-GG 163 (1201)
T ss_pred cCCcEECCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCceeecC-CHHHHHH--HHHhcCCeEEEEECC--CC-CC
Confidence 35654 4668999999999999888886 5899855 55553 3222222 234689999999986 33 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-Eee-cCCCcccchhhcccc
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~-~R~-Slp~~~~~~~~~~~g 243 (346)
.+|.++.++++|... +.++++||||. +|+.+-|.+++|. +... .|. +... .+..
T Consensus 164 ~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~-g~~eveV~v~~Dg~g~vv~lg~rd~s~qr-------~~~k 235 (1201)
T TIGR02712 164 IGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE-NARHVEVQIFGDGKGKVVALGERDCSLQR-------RNQK 235 (1201)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCEEEEEEEEECCCCeEEEeeEEEeeeEe-------cCcc
Confidence 899999999987531 34699999997 4688888888642 3322 221 1100 0000
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
. +. .. +. .+++ ...+.+.++|.++.++||..-++ +|++.+..++ ++||+|||.=++..
T Consensus 236 ~-----ve----e~-Pap~l~~-----~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 236 V-----VE----ET-PAPNLPP-----ETRQALLAAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNTRLQVE 295 (1201)
T ss_pred E-----EE----Ec-CCCCCCH-----HHHHHHHHHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEECCcCcc
Confidence 0 00 00 00 1111 12356889999999999987555 9999985433 69999999988643
No 68
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.11 E-value=8.6e-10 Score=111.13 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=119.3
Q ss_pred HHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEc-cCCCChhhHHHhhCCCCcEEEecCc
Q 019076 97 EDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLV 174 (346)
Q Consensus 97 ~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~-~~~~~~~~~l~~~~l~fPvVvKP~~ 174 (346)
.+-.++ .++..|-| +++|+++.||+.+-+++.+ +|||+|+...-. .+.++..+ ....++||||+||..
T Consensus 92 ae~~~~-~gl~fiGP~~~~i~~mgdK~~ar~~~~~-------aGVP~vpgs~~~~~~~ee~~~--~a~~iGyPVivKa~~ 161 (449)
T COG0439 92 AEACAE-AGLTFIGPSAEAIRRMGDKITARRLMAK-------AGVPVVPGSDGAVADNEEALA--IAEEIGYPVIVKAAA 161 (449)
T ss_pred HHHHHH-cCCeeeCcCHHHHHHhhhHHHHHHHHHH-------cCCCcCCCCCCCcCCHHHHHH--HHHHcCCCEEEEECC
Confidence 333344 46777776 4678888899999999986 688888876110 11112222 235688999999986
Q ss_pred CCCCCCceeeEEEeChhhhhcc------------CCC-eEEEecccCCCeEEEEEEECCEE----EEEEee-cCCCcccc
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL------------EPP-MLLQEFVNHGGILFKIYIIGETI----KVVRRF-SLPNVSKR 236 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l------------~~p-~v~QEfI~h~G~~~KV~VvG~~v----~~~~R~-Slp~~~~~ 236 (346)
+. +|.||.+|.+.++|.+. ..| +++|+||+. .+-+=+-|+||.. ....|- |+....
T Consensus 162 Gg---Gg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~rhievqv~gD~~g~~i~l~eRdcsiqrr~-- 235 (449)
T COG0439 162 GG---GGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-PRHIEVQVLGDGHGNVIHLGERDCSIQRRH-- 235 (449)
T ss_pred CC---CcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-CceEEEEEEEcCcccEEEEEeccCCCcCCc--
Confidence 33 57999999999998653 234 999999984 4456777888873 335554 443210
Q ss_pred hhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019076 237 ELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 237 ~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg 315 (346)
..+- ..+....++++ ....+.+.|+++++.+|-.-+| +.++.+. +| ++|++|+|.==+
T Consensus 236 -----------qkvi---eeapsp~~~~e-----~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~-~~yfiEmN~Rlq 294 (449)
T COG0439 236 -----------QKVI---EEAPSPLLTEE-----LREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NG-EFYFIEMNTRLQ 294 (449)
T ss_pred -----------ccee---eecCCCCCCHH-----HHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CC-CEEEEEEecccc
Confidence 0000 00000011110 1345778889999999988888 9999985 34 699999997554
Q ss_pred CC
Q 019076 316 YG 317 (346)
Q Consensus 316 ~~ 317 (346)
-.
T Consensus 295 ve 296 (449)
T COG0439 295 VE 296 (449)
T ss_pred cC
Confidence 43
No 69
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=99.10 E-value=1.1e-09 Score=97.92 Aligned_cols=186 Identities=13% Similarity=0.170 Sum_probs=107.7
Q ss_pred ChHHHHHHhcCHHH----HHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeE
Q 019076 110 DPPDAIKHLHNRQS----MLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 185 (346)
Q Consensus 110 Dp~~ai~~l~dR~~----~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~ 185 (346)
|++.||..+.||=- ++++-.+++ ...+|.=.+.... +-. +. . ..-+||+|+| ++++- .+-|=.
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG----~e~FPLieQt~yp-nh~---em-~-s~~~fPvVvK--vG~~h-~G~GKv 67 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLG----PEKFPLIEQTYYP-NHR---EM-L-SAPRFPVVVK--VGHAH-AGMGKV 67 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHH----TTTS-B---EEES-SGG---GG-C-S-SSSSEEEE--ESS-S-TTTTEE
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhC----CcccccceeeecC-Chh---hh-c-cCCCCCEEEE--Ecccc-CceeEE
Confidence 78999999999942 333333343 2344444444332 111 11 1 2358999999 65433 234456
Q ss_pred EEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccC
Q 019076 186 LAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 258 (346)
Q Consensus 186 lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~ 258 (346)
+|.|...+.++ +.-+-++.||+ .-.|++|--||+++.++.|+|+.. .|++|.|.--
T Consensus 68 kv~n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~----nWK~N~gsa~------------ 130 (203)
T PF02750_consen 68 KVDNQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKANTGSAM------------ 130 (203)
T ss_dssp EE-SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSS----TSSTTSSSEE------------
T ss_pred EEccHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEccccc----cccccccchh------------
Confidence 99999888764 55678899995 477999999999999999999742 4566644111
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccCC-CCCCC--CcccHHHHHHHHHHHH
Q 019076 259 DADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINYF-PGYGK--MPDYEHIFTDFLLSLE 334 (346)
Q Consensus 259 ~~~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~~~ViDVN~f-Pg~~g--v~~~~~~l~~~l~~~i 334 (346)
+ .+.+..+..+.-..++++.+ ||+++++|+|... +| +.||+|||.. -++-| .++=...++|.+...+
T Consensus 131 ---l----Eqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dG-ke~Iievnds~m~L~g~~qeeDr~~I~dlV~~km 201 (203)
T PF02750_consen 131 ---L----EQIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DG-KEYIIEVNDSSMPLIGEHQEEDRRLIADLVVAKM 201 (203)
T ss_dssp ---E----EEE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-TT----GGGHHHHHHHHHHHHHHHH
T ss_pred ---e----eecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CC-CEEEEEecCCcccccchhHHHHHHHHHHHHHHHh
Confidence 1 12233455778888899999 9999999999875 56 6899999975 22222 1222345555555443
No 70
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.02 E-value=6.6e-09 Score=102.24 Aligned_cols=221 Identities=19% Similarity=0.259 Sum_probs=134.2
Q ss_pred cCCcEEEEecCCCC-CC-----------------------CCCCccEEEEcccchhh--H-HHHHH-HHHhCCCe-eeeC
Q 019076 60 NKGISFVAIDQNRP-LS-----------------------DQGPFDVVLHKLSGMEW--C-KIIED-YRQKHPEV-TILD 110 (346)
Q Consensus 60 ~~Gi~~v~id~~~~-l~-----------------------~q~~fDvilhK~t~~~~--~-~~l~~-y~~~~p~v-~VID 110 (346)
+.|+.++.|+.+-. +. .+...|.++.=+..+.. + -.+.+ ...+.-|+ +|.-
T Consensus 27 eeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs 106 (400)
T COG0458 27 EEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGS 106 (400)
T ss_pred hcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEec
Confidence 67999999988531 11 12446887777765321 1 11111 11111233 5689
Q ss_pred hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeCh
Q 019076 111 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 190 (346)
Q Consensus 111 p~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~ 190 (346)
++++|+.+.||..+.+.+.++ ++++| +.+.. ..+...+ ....++||+|+||..+- ++.+..+++|+
T Consensus 107 ~~eaI~iaeDr~~fke~m~ei-------gi~~P-~~~~~-~~~e~~~--~~~~ig~PvIVrP~~~l---GG~G~~i~~n~ 172 (400)
T COG0458 107 DPEAIEIAEDKKLFKEAMREI-------GIPVP-SRIAH-SVEEADE--IADEIGYPVIVKPSFGL---GGSGGGIAYNE 172 (400)
T ss_pred CHHHhhhhhhHHHHHHHHHHc-------CCCCC-ccccc-cHHHHhh--hHhhcCCCEEEecCcCC---CCCceeEEeCH
Confidence 999999999999999999984 88999 33332 1111212 24568999999998744 45678999999
Q ss_pred hhhhcc---------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCcccchhhcccceeecccccccccccC
Q 019076 191 FSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 258 (346)
Q Consensus 191 ~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~ 258 (346)
++|..+ -.+++++|+|. ++..|.+-|+-|. +.++. ++.|+++....+.+.
T Consensus 173 eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc--~men~dp~gvhtgds--------------- 234 (400)
T COG0458 173 EELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVC--NMENLDPMGVHTGDS--------------- 234 (400)
T ss_pred HHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEE--eCCccccccccccce---------------
Confidence 998764 24689999996 4566766665333 22222 223332212211110
Q ss_pred CCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 259 DADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 259 ~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
....|... .+ -...++..+.++.+.+|.. =.+|++..+.+++ +|||||||.=++
T Consensus 235 -i~vapaqt-l~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 235 -ITVAPAQT-LTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred -eeeccccc-cccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 00011000 00 0233566889999999988 1239999987655 899999996555
No 71
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.98 E-value=5.1e-08 Score=99.85 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=73.8
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccC-cEEEEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVP-RQMVITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P-~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
+.+..++ -|++++ .+.++.+.+.||..|-+.|.+ ++||+| ++..+. +.+++.+.+ ..+ +|+|+||.
T Consensus 85 lad~l~~-~Gi~v~Gps~~aa~le~dK~~~K~~l~~-------~gIpt~~~~~~~~-~~~ea~~~~--~~~-~PvVVKP~ 152 (486)
T PRK05784 85 VADVLRE-EGFPVFGASSKCARIEKSKVWARELMWK-------YSIPGRLRYKVFY-DVEEAAKFI--EYG-GSVAIKPA 152 (486)
T ss_pred HHHHHHh-CCCCEECCcHHHHHHhcCHHHHHHHHHH-------cCcCCCccceEeC-CHHHHHHHH--hhc-CCEEEeeC
Confidence 4444443 467664 788999999999988888886 689997 566553 333232222 223 69999997
Q ss_pred cCCCCCCceeeEEEeChhh---------h----hc----------cCCCeEEEecccCCCeEEEEEEEC
Q 019076 174 VVDGSAKSHELFLAYDRFS---------L----SE----------LEPPMLLQEFVNHGGILFKIYIIG 219 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~---------L----~~----------l~~p~v~QEfI~h~G~~~KV~VvG 219 (346)
. ++.|.+|.++.+.++ + .. ...++|+|||+. |..|-|.++.
T Consensus 153 ~---~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~ 216 (486)
T PRK05784 153 R---QAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD--GVEYTLQVLT 216 (486)
T ss_pred C---CCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC--CeEEEEEEEE
Confidence 4 346899999999652 1 11 135799999995 8888887774
No 72
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=98.94 E-value=6.6e-09 Score=95.33 Aligned_cols=161 Identities=16% Similarity=0.253 Sum_probs=97.7
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEc-cCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~-~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
||....+++.++ +||+|+..... .+.++..+ ....++||+++||..+. ++++|.+++|+++|.+.
T Consensus 1 Dk~~~~~~~~~~-------gvp~~pg~~~~~~~~eea~~--~a~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKL-------GVPVPPGSTVPISSVEEALE--FAEEIGYPVLIKASAGG---GGRGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHT-------T-BBSSBESSSBSSHHHHHH--HHHHH-SSEEEEETTSS---TTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CCCcCCCCCCCCCCHHHHHH--HHHhcCCceEEeecccc---cccccccccchhhhhhhhh
Confidence 677777888874 78888877541 12222222 23458999999998643 47999999999998753
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCE---E-EEEEee-cCCCcccchhhcccceeecccccccccccCCC
Q 019076 197 -----------EPPMLLQEFVNHGGILFKIYIIGET---I-KVVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDA 260 (346)
Q Consensus 197 -----------~~p~v~QEfI~h~G~~~KV~VvG~~---v-~~~~R~-Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~ 260 (346)
+.++++++|+. +.+.+-|=|++|. + +...|- +.+. ..++.. . .+...
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D~~gn~~~~~~~e~~~~~-hs~dsi---~------------~~P~~ 131 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRDGKGNVVHLGERECSEQR-HSQDSI---E------------EAPAQ 131 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEETTSEEEEEEEEEEEEEE-TTEEEE---E------------EES-S
T ss_pred hccccCccccccceEEEeeehh-hhhhhhhhhhhccccceeeeeeecccccc-ccccce---e------------Eeecc
Confidence 57999999997 4567778788663 2 233332 1111 101000 0 00001
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019076 261 DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 261 ~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg 315 (346)
.+++. ....++++|.++++.+|..-.| |=++.+..++ ++||+|+|..-+
T Consensus 132 ~L~~~-----~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~ 181 (211)
T PF02786_consen 132 TLSDE-----ERQKLREAAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQ 181 (211)
T ss_dssp SS-HH-----HHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--
T ss_pred ccchH-----HHHHHHHHHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCC
Confidence 12111 1356889999999999998776 9999985333 899999997665
No 73
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.93 E-value=2.9e-08 Score=94.46 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=135.2
Q ss_pred cCCcEEEEecCC--CCCC---------------------CCCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHH
Q 019076 60 NKGISFVAIDQN--RPLS---------------------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 116 (346)
Q Consensus 60 ~~Gi~~v~id~~--~~l~---------------------~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~ 116 (346)
..|++++.+|-= .|-. ++...|.|+.-.-. .....|.++.+ .|..||=...+.+
T Consensus 33 RLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEA-I~td~L~elE~--~G~~VVP~ArAt~ 109 (394)
T COG0027 33 RLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEA-IATDALVELEE--EGYTVVPNARATK 109 (394)
T ss_pred hcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhh-hhHHHHHHHHh--CCceEccchHHHH
Confidence 789999999972 2211 12334544443322 33455555543 5678888899999
Q ss_pred HhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc
Q 019076 117 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL 196 (346)
Q Consensus 117 ~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l 196 (346)
.++||..+-++..+ .-++||-++....+ .+++.+ ....++||+|+||+. +| -+||=+++.+++++.+.
T Consensus 110 ltMnRegiRrlAAe------eLglpTs~Y~fa~s-~~e~~~--a~~~iGfPcvvKPvM--SS-SGkGqsvv~~~e~ve~A 177 (394)
T COG0027 110 LTMNREGIRRLAAE------ELGLPTSKYRFADS-LEELRA--AVEKIGFPCVVKPVM--SS-SGKGQSVVRSPEDVEKA 177 (394)
T ss_pred hhhcHHHHHHHHHH------HhCCCCcccccccc-HHHHHH--HHHHcCCCeeccccc--cc-CCCCceeecCHHHHHHH
Confidence 99999765444443 13677888776642 222322 346799999999997 44 57999999999998763
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCC--c--ccchhhcccceeecccccccccccCCCC
Q 019076 197 -----------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPN--V--SKRELAKVVSVFRFPRVSSAAASADDAD 261 (346)
Q Consensus 197 -----------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~--~--~~~~~~~~~g~~~~~~vs~~~~~~~~~~ 261 (346)
..-+++++||+- +|-+-.+ ..|..-++ | +.+ .+..+|.| + ..
T Consensus 178 W~~A~~g~R~~~~RVIVE~fv~f---d~EiTlL------tvr~~~~~~~Fc~PIG-Hrq~dgdY--~-----------ES 234 (394)
T COG0027 178 WEYAQQGGRGGSGRVIVEEFVKF---DFEITLL------TVRAVDGTGSFCAPIG-HRQEDGDY--R-----------ES 234 (394)
T ss_pred HHHHHhcCCCCCCcEEEEEEecc---eEEEEEE------EEEEecCCCCcCCCcc-cccCCCCh--h-----------cc
Confidence 346999999974 3332221 11111111 0 000 01111211 0 01
Q ss_pred CCCCCCCCC--ChHHHHHHHHHHHHHhC-CcEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 262 LDPGIAELP--PRPLLERLARELRHRLG-LRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 262 ~~~~~~~~p--~~~~~~~lA~~l~~~lG-l~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
|.|. +|. ..+..+.||+++.++|| ..+|||.+.+. ||+.++-||---|-=.|+--.
T Consensus 235 WQP~--~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDTGmVTL 293 (394)
T COG0027 235 WQPQ--EMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDTGMVTL 293 (394)
T ss_pred cCcc--ccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCCCCCceEEE
Confidence 2221 111 12346789999999996 68999999985 468999999999987776543
No 74
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.92 E-value=7e-09 Score=92.27 Aligned_cols=137 Identities=24% Similarity=0.323 Sum_probs=73.4
Q ss_pred ccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeCh-hhhhc--------cCCCeEEEecccCC-C
Q 019076 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR-FSLSE--------LEPPMLLQEFVNHG-G 210 (346)
Q Consensus 141 ~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~-~~L~~--------l~~p~v~QEfI~h~-G 210 (346)
.+|+|++.. +.+.+.+.+...+ . +|+||+.+.| +.++.++... ..+.. -..|+++|+|++.= .
T Consensus 11 ~~P~T~vs~-~~~~i~~f~~~~~--~-~VlKPl~g~g---G~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 11 LIPPTLVSR-DKEEIRAFIEEHG--D-IVLKPLDGMG---GRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp CS--EEEES--HHHHHHHHHHHS--S-EEEEESS--T---TTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG
T ss_pred cCcCEEEEC-CHHHHHHHHHHCC--C-EEEEECCCCC---CcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccC
Confidence 369999874 4555555555544 2 9999998554 6778888774 22222 24689999999843 2
Q ss_pred eEEEEEEECCEEE-EEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh---
Q 019076 211 ILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL--- 286 (346)
Q Consensus 211 ~~~KV~VvG~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l--- 286 (346)
-|.|+++++++.. ++.|.+.. ++++.|. .. ++...+ . ++.+...++|.++...|
T Consensus 84 GDkRii~~nG~~~~av~R~P~~----gd~R~N~--------~~------Gg~~~~--~--~lt~~e~~i~~~i~~~L~~~ 141 (173)
T PF02955_consen 84 GDKRIILFNGEPSHAVRRIPAK----GDFRSNL--------AA------GGSAEP--A--ELTEREREICEQIGPKLRED 141 (173)
T ss_dssp -EEEEEEETTEE-SEEEEE--S----S-S---G--------GG------TSCEEE--E--E--HHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCEEhHHeecCCCC----CCceeee--------cc------CCceee--c--CCCHHHHHHHHHHHHHHhhc
Confidence 2899999999975 55554321 3444331 11 222211 1 12344577777777666
Q ss_pred CCcEeEEEEEEecCcCCeEEEEeccCC
Q 019076 287 GLRLFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 287 Gl~lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
|+-++|+|+| + + |+.|||.+
T Consensus 142 Gl~f~GiDvi---g--~--~l~EiNvt 161 (173)
T PF02955_consen 142 GLLFVGIDVI---G--D--KLTEINVT 161 (173)
T ss_dssp T--EEEEEEE---T--T--EEEEEE-S
T ss_pred CcEEEEEecc---c--c--ceEEEecc
Confidence 8999999999 3 2 68899965
No 75
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.83 E-value=1.7e-07 Score=88.75 Aligned_cols=193 Identities=17% Similarity=0.246 Sum_probs=114.8
Q ss_pred HHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 100 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 100 ~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
++++++++++|| ...||+.+++.|.+-. .-.=-.|.|..+. +.+++.+.+...+ -+++||.. ||
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~----~l~~~LP~T~~~~-~~~~l~~~L~~y~---~vylKP~~--Gs- 66 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDP----ELRPYLPETELLT-SFEDLREMLNKYK---SVYLKPDN--GS- 66 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCC----cchhhCCCceEcC-CHHHHHHHHHHCC---EEEEEeCC--CC-
Confidence 356789999998 4689999999999621 0112489998884 3344544444433 58999987 66
Q ss_pred CceeeEEEeChhh----------------------hhc-----c-CCCeEEEecccCC---C--eEEEEEEECC---EEE
Q 019076 180 KSHELFLAYDRFS----------------------LSE-----L-EPPMLLQEFVNHG---G--ILFKIYIIGE---TIK 223 (346)
Q Consensus 180 ~sh~m~lv~~~~~----------------------L~~-----l-~~p~v~QEfI~h~---G--~~~KV~VvG~---~v~ 223 (346)
.+.++..|....+ |.. + ..++++|+.|+-. | .||||.|--+ .|.
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 5666655544322 110 0 3489999999754 3 4999999933 354
Q ss_pred E---EEeecCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHH----HHHHHHHHHHhCC--cEeEE
Q 019076 224 V---VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLL----ERLARELRHRLGL--RLFNI 293 (346)
Q Consensus 224 ~---~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~----~~lA~~l~~~lGl--~lfGv 293 (346)
+ +.|.+.++ .+.+ ++++++....... +............+ ..+|..+.+.+|. .-+|+
T Consensus 147 vtg~~~Rva~~~----~ivT--------N~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGi 214 (262)
T PF14398_consen 147 VTGIVARVAKPG----SIVT--------NLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGI 214 (262)
T ss_pred EEEEEEEEcCCC----Ccee--------ccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEE
Confidence 3 67766543 1221 1222211000000 00000000012233 4555666666774 67799
Q ss_pred EEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 294 DMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 294 Dvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
|+-+|. .| ++++||||.-|+-..+...
T Consensus 215 Dl~iD~-~g-~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 215 DLGIDK-NG-KIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred EEEEcC-CC-CEEEEEEeCCCCcchhhcc
Confidence 999995 45 8999999999997766664
No 76
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.83 E-value=1.9e-08 Score=93.24 Aligned_cols=175 Identities=20% Similarity=0.211 Sum_probs=106.7
Q ss_pred CccEEEEcccc--h---hhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC
Q 019076 79 PFDVVLHKLSG--M---EWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 153 (346)
Q Consensus 79 ~fDvilhK~t~--~---~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~ 153 (346)
.+|+-|.=... . ...+.+++|.+ +-|. +++||+.|.||+.++..|+. .+++|.|..+..
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~~~-nLG~----S~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~~--- 136 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEYVE-NLGC----SPRAIRVAADKRLTYKALRD--------AVKQPPTREWAE--- 136 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHHhH-hhCC----CHHHHhHhhhHHHHHHHHhh--------hccCCCcccccc---
Confidence 46655544432 1 12355666643 3442 58999999999999999985 489998875421
Q ss_pred ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhccCCCeEEEecccCCCeEEEE-EEECCEEEE--EEeecC
Q 019076 154 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKI-YIIGETIKV--VRRFSL 230 (346)
Q Consensus 154 ~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV-~VvG~~v~~--~~R~Sl 230 (346)
..--.|+||..+||+ .++....+...+ +++||||+ |.-+.| ..+|+++.+ +-|.-+
T Consensus 137 ----------~~~k~ViKp~dgCgg---e~i~~~~~~pd~------~i~qEfIe--G~~lSVSL~~GEkv~pLsvNrQfi 195 (307)
T COG1821 137 ----------EPKKYVIKPADGCGG---EGILFGRDFPDI------EIAQEFIE--GEHLSVSLSVGEKVLPLSVNRQFI 195 (307)
T ss_pred ----------CCceEEecccccCCc---ceeeccCCCcch------hhHHHhcC--CcceEEEEecCCccccceechhhh
Confidence 122489999998875 344444333332 89999996 444444 455887654 222210
Q ss_pred CCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhC-C-cEeEEEEEEecCcCCeEEEE
Q 019076 231 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLG-L-RLFNIDMIREHGMRDVFYVI 308 (346)
Q Consensus 231 p~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG-l-~lfGvDvi~~~~~g~~~~Vi 308 (346)
.+ ..+.-.+.++ ..|. ..+..+.+.+.|.++.+.++ | .++|||++... .+|||
T Consensus 196 -~~-----------~~~~~~y~gg-------~~pi--~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVlsD----~pYvI 250 (307)
T COG1821 196 -IF-----------AGSELVYNGG-------RTPI--DHELKREAFEEAIRAVECIPGLNGYVGVDLVLSD----EPYVI 250 (307)
T ss_pred -hh-----------ccceeeeccC-------cCCC--CcHHHHHHHHHHHHHHHhhccccceeeEEEEecC----CcEEE
Confidence 00 0011111111 1111 11234567788888888887 4 57799999862 58999
Q ss_pred eccCCCC
Q 019076 309 DINYFPG 315 (346)
Q Consensus 309 DVN~fPg 315 (346)
|||.-|.
T Consensus 251 EINpR~T 257 (307)
T COG1821 251 EINPRPT 257 (307)
T ss_pred EecCCCC
Confidence 9999887
No 77
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.65 E-value=9.3e-08 Score=85.06 Aligned_cols=153 Identities=15% Similarity=0.186 Sum_probs=91.7
Q ss_pred CccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeE
Q 019076 138 GKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGIL 212 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~ 212 (346)
.+||||++..+.+ .+++.+ +...++||+|+|+.. |.-.++|..++.+.+++.+. ..++++|+||+. .+.
T Consensus 4 ~gip~~~~~~i~~-~~~l~~--a~~~iG~P~vlK~~~--~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~E 77 (172)
T PF02222_consen 4 LGIPTAPYATIDS-LEDLEE--AAESIGFPAVLKTRR--GGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DRE 77 (172)
T ss_dssp TT--B-EEEEESS-HHHHHH--HHHHHTSSEEEEESS--SSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SEE
T ss_pred cCCCCCCeEEECC-HHHHHH--HHHHcCCCEEEEccC--cCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cEE
Confidence 5899999999953 333433 234689999999875 33478999999999998764 579999999984 556
Q ss_pred EEEEEECCE---EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-
Q 019076 213 FKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL- 288 (346)
Q Consensus 213 ~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl- 288 (346)
+-|.|+.+. +.++ +..-|+. .++.+.+. ..++.+++. .....+++|.++.+.|+.
T Consensus 78 iSvivaR~~~G~~~~y--p~~en~~------~~~il~~s--------~~Pa~i~~~-----~~~~a~~ia~~i~~~l~~v 136 (172)
T PF02222_consen 78 ISVIVARDQDGEIRFY--PPVENVH------RDGILHES--------IAPARISDE-----VEEEAKEIARKIAEALDYV 136 (172)
T ss_dssp EEEEEEEETTSEEEEE--EEEEEEE------ETTEEEEE--------EESCSS-HH-----HHHHHHHHHHHHHHHHTSS
T ss_pred EEEEEEEcCCCCEEEE--cCceEEE------ECCEEEEE--------ECCCCCCHH-----HHHHHHHHHHHHHHHcCcE
Confidence 677666322 2111 0001111 11221111 012233221 245678999999999975
Q ss_pred cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 289 RLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 289 ~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
.+|+|.+.+.. +|++.||.||--=|--.|
T Consensus 137 Gv~~VE~Fv~~-~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 137 GVLAVEFFVTK-DGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp EEEEEEEEEET-TSTEEEEEEEESS--GGG
T ss_pred EEEEEEEEEec-CCCEEEEEeccCCccCcc
Confidence 67889999984 454599999986665443
No 78
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.62 E-value=7.3e-07 Score=87.48 Aligned_cols=161 Identities=14% Similarity=0.160 Sum_probs=93.5
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.||..++..|.+ +||++|+++. +. ..+.||+||||..|.|. -|.+..++.|.++|...
T Consensus 125 ~dKk~~yk~L~~-------aGI~~Pk~~~---~p---------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~ 184 (366)
T PRK13277 125 TGEKNYYWLLEK-------AGIPYPKLFK---DP---------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSE 184 (366)
T ss_pred cCHHHHHHHHHH-------cCCCCceeec---Cc---------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHH
Confidence 344456676764 6999999884 11 24789999999874442 27899999999988643
Q ss_pred ---C---------CCeEEEecccCCCeEE--EEEEE--CCEE--EEEEeecCCCcccchhhcccceeeccccccccc---
Q 019076 197 ---E---------PPMLLQEFVNHGGILF--KIYII--GETI--KVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA--- 255 (346)
Q Consensus 197 ---~---------~p~v~QEfI~h~G~~~--KV~Vv--G~~v--~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~--- 255 (346)
+ ..+++||||. |..| -+|+- -+++ ..+.|+---|++ |....+...+...
T Consensus 185 ~l~~~g~I~~~~~~~~iIQEyI~--G~ey~~d~F~s~l~g~ve~l~id~R~esn~d--------g~~r~pa~~ql~~~~~ 254 (366)
T PRK13277 185 ELIKAGVIDREDLKNARIEEYVI--GAHFNFNYFYSPIRDRLELLGIDRRIQSNLD--------GFVRLPAPQQLKLNEE 254 (366)
T ss_pred hhhhcCcccccccccceeEeccC--CCEEEEEEEEeccCCcEEEEEEeeccccccc--------cccccChhhhhhcccC
Confidence 1 2357999996 6544 45554 4533 334433222321 2211111000000
Q ss_pred --ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhC-------CcEeEEEEEEecCcCCeEEEEeccC
Q 019076 256 --SADDADLDPGIAELPPRPLLERLARELRHRLG-------LRLFNIDMIREHGMRDVFYVIDINY 312 (346)
Q Consensus 256 --~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG-------l~lfGvDvi~~~~~g~~~~ViDVN~ 312 (346)
....+...-...+. ..+.+.+++.++.++++ ..-|++|.+++.+ + .+||+|||.
T Consensus 255 p~~vv~G~~p~t~rEs-lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d-~-~~~V~EInp 317 (366)
T PRK13277 255 PRYIEVGHEPATIRES-LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPD-L-DFVVYDVAP 317 (366)
T ss_pred CceEEEcCccccchHH-HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCC-C-cEEEEEEcC
Confidence 00001111011111 24567888888888877 5667799998642 3 699999984
No 79
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=5e-07 Score=87.00 Aligned_cols=221 Identities=11% Similarity=0.181 Sum_probs=135.7
Q ss_pred CccEEEEcccc------hhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC
Q 019076 79 PFDVVLHKLSG------MEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS 152 (346)
Q Consensus 79 ~fDvilhK~t~------~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~ 152 (346)
..|.||.|... +.++..+.-+. ..|++.||++.++....||--...-|.++..+++...+|.=.+...-..
T Consensus 155 kPdfVlirqhA~~mA~~~d~rslvig~q--yagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnH- 231 (488)
T KOG3895|consen 155 KPDFVLIRQHAFSMALNEDYRSLVIGLQ--YAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNH- 231 (488)
T ss_pred cCCEEEEcccchhhccccchHHHHHHHH--hcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCc-
Confidence 35777777543 13344445554 4579999999999999999655555555544544455554444433111
Q ss_pred CChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEE
Q 019076 153 LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVV 225 (346)
Q Consensus 153 ~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~ 225 (346)
+.+. ..-.||+||| +++|- -+-|-..|.|.++|.++ +.-.-+|-||+ .-.|++|--||..+.++
T Consensus 232 ----K~m~-s~~tyPvVVk--vghah-sGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiD-aKYDiriQKIG~nYKay 302 (488)
T KOG3895|consen 232 ----KEML-SQPTYPVVVK--VGHAH-SGMGKIKVENHEDFQDIASVVALTKTYATAEPFID-AKYDIRIQKIGHNYKAY 302 (488)
T ss_pred ----hhhc-cCCCCcEEEE--ecccc-cccceeeecchhhhHhHHHHHHHHhhhhhcccccc-ccceeehhhhhhhHHHH
Confidence 1111 2346999999 54442 23344677888888775 45567899996 35689999999999999
Q ss_pred EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCe
Q 019076 226 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDV 304 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~ 304 (346)
+|.|+- +.|++|.|.--..+++ | .+.-+.-...+.+.+ ||+++.||.+... .| +
T Consensus 303 mRtsIs----gnWKtNtGSamLEQIa-----------------m--seRyklwvdtcse~fGgldICav~alhsK-dG-r 357 (488)
T KOG3895|consen 303 MRTSIS----GNWKTNTGSAMLEQIA-----------------M--SERYKLWVDTCSEMFGGLDICAVKALHSK-DG-R 357 (488)
T ss_pred hhhhhc----cCcccCchHHHHHHHH-----------------H--HHHHHHHHHHHHHhcCCcceEEeeeeecc-cc-h
Confidence 999984 2466665410000000 0 112233334455555 5899999999864 45 5
Q ss_pred EEEEeccC--CCCCCC-CcccHHHHHHHHHHHHHh
Q 019076 305 FYVIDINY--FPGYGK-MPDYEHIFTDFLLSLEQS 336 (346)
Q Consensus 305 ~~ViDVN~--fPg~~g-v~~~~~~l~~~l~~~i~~ 336 (346)
=||+|||. .|=+.. .++-.+.+.+.+..++..
T Consensus 358 d~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq 392 (488)
T KOG3895|consen 358 DYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQ 392 (488)
T ss_pred hheeeeccccccccccchhHHHHHHHHHHHHHhhh
Confidence 68999997 455553 333345555555555443
No 80
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.59 E-value=1.9e-06 Score=85.10 Aligned_cols=175 Identities=14% Similarity=0.231 Sum_probs=103.1
Q ss_pred CCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 104 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 104 p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
-++++.=..++++...||..+-+.|.+ +||++|+++ . +. ..+.||+|+||.. | ++|++
T Consensus 107 ~~~p~~gn~~~l~~e~dK~~~k~~L~~-------aGIp~p~~~--~-~~---------~~i~~PvIVKp~~--g-~ggkG 164 (358)
T PRK13278 107 FKVPMFGNREILRWEADRDKERKLLEE-------AGIRIPRKY--E-SP---------EDIDRPVIVKLPG--A-KGGRG 164 (358)
T ss_pred CCCCcCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEe--C-CH---------HHcCCCEEEEeCC--C-CCCCC
Confidence 345565567889999999999999886 589999973 1 11 1257999999954 4 37899
Q ss_pred eEEEeChhhhhcc------------CCCeEEEecccCCCeEE--EEEEE--CCEE--EEEEeecCCCcccchhhccccee
Q 019076 184 LFLAYDRFSLSEL------------EPPMLLQEFVNHGGILF--KIYII--GETI--KVVRRFSLPNVSKRELAKVVSVF 245 (346)
Q Consensus 184 m~lv~~~~~L~~l------------~~p~v~QEfI~h~G~~~--KV~Vv--G~~v--~~~~R~Slp~~~~~~~~~~~g~~ 245 (346)
+.++.+++++.+. ...+++||||. |..| -+|+. -+++ ..+-|+-..|++ +.+
T Consensus 165 v~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~--G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d--------~~~ 234 (358)
T PRK13278 165 YFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV--GVPYYFHYFYSPIKNRLELLGIDRRYESNID--------GLV 234 (358)
T ss_pred eEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC--CcEEEEEEEEeccCCeEEEEeeceeeeeccc--------cee
Confidence 9999999887531 36799999995 6655 34554 3553 334444333321 112
Q ss_pred ecccccccc-----cccCCCCCCCC-CCCCCChHHHHHHHHHHHHH----h-C--CcEeEEEEEEecCcCCeEEEEeccC
Q 019076 246 RFPRVSSAA-----ASADDADLDPG-IAELPPRPLLERLARELRHR----L-G--LRLFNIDMIREHGMRDVFYVIDINY 312 (346)
Q Consensus 246 ~~~~vs~~~-----~~~~~~~~~~~-~~~~p~~~~~~~lA~~l~~~----l-G--l~lfGvDvi~~~~~g~~~~ViDVN~ 312 (346)
..+...+.. .....+.+ |. ..+. ..+.+.+++.++.++ + | ..-|++|++++.+ + .++|+|||.
T Consensus 235 r~p~~~~~~~~~~p~~v~~Gn~-P~~~res-ll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d-~-~~~V~Eis~ 310 (358)
T PRK13278 235 RIPAKDQLELGIDPTYVVVGNI-PVVLRES-LLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDN-L-EIVVFEISA 310 (358)
T ss_pred eccchhhhhcccCCceeEecce-eccchHh-HHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCC-C-CEEEEEEeC
Confidence 111100000 00000111 10 0111 123345555555554 5 2 3456799999643 3 589999998
Q ss_pred CC
Q 019076 313 FP 314 (346)
Q Consensus 313 fP 314 (346)
=+
T Consensus 311 R~ 312 (358)
T PRK13278 311 RI 312 (358)
T ss_pred cc
Confidence 77
No 81
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.59 E-value=4.4e-06 Score=81.69 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=136.3
Q ss_pred ccCCcEEEEecCCCCCCC-CCCccEEEEcccch------------------hhHHHHHHHHHhCCCeeeeChHHHHHHhc
Q 019076 59 TNKGISFVAIDQNRPLSD-QGPFDVVLHKLSGM------------------EWCKIIEDYRQKHPEVTILDPPDAIKHLH 119 (346)
Q Consensus 59 ~~~Gi~~v~id~~~~l~~-q~~fDvilhK~t~~------------------~~~~~l~~y~~~~p~v~VIDp~~ai~~l~ 119 (346)
...|+.+..+|++..=.- |---+++..-..|. .+-...-++++.+ +.|-=++++++...
T Consensus 21 ~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~l~~~q 98 (375)
T COG0026 21 ARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDALRIAQ 98 (375)
T ss_pred HhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHHHHHHh
Confidence 389999999998653221 21112222222221 1112223333333 56777899999999
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||+..-+.|.+ .|++||++.++.+ .+++... ...++||.|+|... |.=+++|-.++.+.+++...
T Consensus 99 dR~~eK~~l~~-------~Gi~va~~~~v~~-~~el~~~--~~~~g~p~VlKtr~--gGYDGkGQ~~i~~~~~~~~~~~~ 166 (375)
T COG0026 99 DRLVEKQFLDK-------AGLPVAPFQVVDS-AEELDAA--AADLGFPAVLKTRR--GGYDGKGQWRIRSDADLELRAAG 166 (375)
T ss_pred hHHHHHHHHHH-------cCCCCCCeEEeCC-HHHHHHH--HHHcCCceEEEecc--ccccCCCeEEeeCcccchhhHhh
Confidence 99998888886 5899999999963 3344443 35688999999875 44588999999988766541
Q ss_pred ----CCCeEEEecccCCCeEEEEEEECCE-EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCC
Q 019076 197 ----EPPMLLQEFVNHGGILFKIYIIGET-IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP 271 (346)
Q Consensus 197 ----~~p~v~QEfI~h~G~~~KV~VvG~~-v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~ 271 (346)
..| |+++||+- .+.+-|.++-+. =.++.-+..-|+. ..|++.+... ++.+++ ..
T Consensus 167 ~~~~~~~-vlE~fV~F-~~EiSvi~aR~~~G~~~~yP~~eN~h------~~gIl~~sia--------Pa~i~~-----~~ 225 (375)
T COG0026 167 LAEGGVP-VLEEFVPF-EREISVIVARSNDGEVAFYPVAENVH------RNGILRTSIA--------PARIPD-----DL 225 (375)
T ss_pred hhccCce-eEEeeccc-ceEEEEEEEEcCCCCEEEecccceee------ecCEEEEEEe--------cCcCCH-----HH
Confidence 234 99999975 444666666221 0111111111221 1122221111 122211 12
Q ss_pred hHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 272 RPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 272 ~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
++..+++|.++.+.|+. .++||-+.+..+ | +.+|.|+=-=|--.|
T Consensus 226 ~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~d-g-~llvNEiAPRvHNSG 271 (375)
T COG0026 226 QAQAEEMAKKIAEELDYVGVLAVEFFVTPD-G-ELLVNEIAPRVHNSG 271 (375)
T ss_pred HHHHHHHHHHHHHHcCceEEEEEEEEEECC-C-cEEEeeccCCCCCcc
Confidence 45678999999999986 577899888753 3 799999876665444
No 82
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.58 E-value=3.4e-06 Score=80.98 Aligned_cols=162 Identities=23% Similarity=0.267 Sum_probs=99.2
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
+|-..+..+-||..++..|..+ +++.|...-+ +.+ ..-..++|.||+.+.|. + +-++.-
T Consensus 111 ~P~~~v~~~snk~~~~r~l~~l-------gmp~p~~~~~--------e~~--~~gekt~IlKPv~GaGG--~--~el~~~ 169 (389)
T COG2232 111 EPEVKVVEASNKLKFYRKLEVL-------GMPEPSEKKI--------EPL--EEGEKTLILKPVSGAGG--L--VELVKF 169 (389)
T ss_pred CcHHHHHHHHHHHhhhhhhhhc-------CCCCChhhhh--------hhh--hhcceeeEEeeccCCCc--e--eeeccc
Confidence 5555999999999999998875 5566643221 111 11245899999985442 2 333322
Q ss_pred hhhhhccCCCeEEEecccCCCeEEEEEEECCE----EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCC
Q 019076 190 RFSLSELEPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG 265 (346)
Q Consensus 190 ~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~ 265 (346)
.++.. ..++++|||| .|+-+-|-+|++. ...+-+.-+ ++. ....+.|.| .+.+.|-
T Consensus 170 ~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~QiI-~~~----~~~~~~f~Y-----------~GNlTP~ 229 (389)
T COG2232 170 DEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQII-DGL----RGEYSQFVY-----------KGNLTPF 229 (389)
T ss_pred ccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeeeee-ccc----cccccccee-----------ccCcCCC
Confidence 22222 3789999999 5999999999773 333433322 110 011122222 2344442
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 266 IAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 266 ~~~~p~~~~~~~lA~~l~~~lGl~lf-GvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
..+ ..+++++||..+-..|||--- |||++... . ++|||||| |=+.|.
T Consensus 230 ~~~--~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~--gpyViEVN--PR~qGt 277 (389)
T COG2232 230 PYE--EVEEAERLAEELVEELGLVGSNGVDFVLND-K--GPYVIEVN--PRIQGT 277 (389)
T ss_pred cch--hhHHHHHHHHHHHHHhccccccccceEeec-C--CcEEEEec--Ccccch
Confidence 111 135689999999999998644 79999974 2 48999999 444443
No 83
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.53 E-value=9.8e-06 Score=77.67 Aligned_cols=195 Identities=17% Similarity=0.188 Sum_probs=114.1
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEc-cC------CCC---hhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KD------SLS---IPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~-~~------~~~---~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
||.+....+.||..+.+++.+ .+|++|+.+... .+ ..+ +.+.+ ......++|+||.. ||
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~-------~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~viKP~~--G~- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRD-------YGIPVPEAIFNVGRDYFDLREQHSIEDLEEFL-RKHAPDRFVIKPAN--GS- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHH-------hcCCCCceEEeccceEEecccccCHHHHHHHH-HhccCCcEEEEeCC--CC-
Confidence 888999999999999999886 588999843211 10 111 11211 22234799999986 66
Q ss_pred CceeeEEEeChhh---------hh----ccC-CCeEEEecccCC---------C-eEEEEEEE-C-CEE---EEEEeecC
Q 019076 180 KSHELFLAYDRFS---------LS----ELE-PPMLLQEFVNHG---------G-ILFKIYII-G-ETI---KVVRRFSL 230 (346)
Q Consensus 180 ~sh~m~lv~~~~~---------L~----~l~-~p~v~QEfI~h~---------G-~~~KV~Vv-G-~~v---~~~~R~Sl 230 (346)
.++++.++...++ +. .+. ..+++||+|.-. + -.+||.++ . +.+ .++.|-+-
T Consensus 85 ~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~ 164 (285)
T PF14397_consen 85 GGKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGR 164 (285)
T ss_pred CccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCC
Confidence 6889988877652 11 111 279999998644 1 16798877 3 232 34677542
Q ss_pred CCcccchhhccccee---eccc-ccccc-cccCCCCC--CCC------CCCCCChHHHHHHHHHHHHHh-CCcEeEEEEE
Q 019076 231 PNVSKRELAKVVSVF---RFPR-VSSAA-ASADDADL--DPG------IAELPPRPLLERLARELRHRL-GLRLFNIDMI 296 (346)
Q Consensus 231 p~~~~~~~~~~~g~~---~~~~-vs~~~-~~~~~~~~--~~~------~~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi 296 (346)
.......+. .+|.. +-.. +...+ ....+... .|. ....|.=+++.++|.++++.+ ++.+.|.||.
T Consensus 165 ~~~~~DN~~-~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDva 243 (285)
T PF14397_consen 165 GGSGVDNFH-QGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVA 243 (285)
T ss_pred CCCcccccC-CCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEE
Confidence 111101111 11111 1111 00000 00011111 121 124554556889999988665 8999999999
Q ss_pred EecCcCCeEEEEeccCC--CCCCCC
Q 019076 297 REHGMRDVFYVIDINYF--PGYGKM 319 (346)
Q Consensus 297 ~~~~~g~~~~ViDVN~f--Pg~~gv 319 (346)
++. . ++++||.|+. ||+.-.
T Consensus 244 it~-~--Gp~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 244 ITE-D--GPVLLEGNARWDPGLMIQ 265 (285)
T ss_pred EcC-C--CcEEEEeeCCCCCCcHhh
Confidence 985 3 3899999999 998733
No 84
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.41 E-value=1.3e-06 Score=82.78 Aligned_cols=170 Identities=15% Similarity=0.212 Sum_probs=100.5
Q ss_pred eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCC-CCc-eeeEE
Q 019076 109 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS-AKS-HELFL 186 (346)
Q Consensus 109 IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS-~~s-h~m~l 186 (346)
+=+....+-+.+|=.+|..-.++ ++++|+|+.+++..+ . ....|.||+|+||-.+.|. ..+ -+...
T Consensus 103 lp~w~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d-~----~~~el~FPvILKP~mgg~~~~~araKa~~ 170 (415)
T COG3919 103 LPDWALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEID-T----LVDELTFPVILKPGMGGSVHFEARAKAFT 170 (415)
T ss_pred CCcHHHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhh-h----hhhheeeeEEecCCCCCcceeehhhheee
Confidence 33466777777777777777765 789999999964222 1 2346999999999864421 111 12344
Q ss_pred EeChhhhhcc---------CCCeEEEecccCCCeEEEE---EEECCE-E-EEEEeecCCCcccchhhcccceeecccccc
Q 019076 187 AYDRFSLSEL---------EPPMLLQEFVNHGGILFKI---YIIGET-I-KVVRRFSLPNVSKRELAKVVSVFRFPRVSS 252 (346)
Q Consensus 187 v~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV---~VvG~~-v-~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~ 252 (346)
+.+.++++.. ...+|+||||+-+|---.+ ++-.++ | .+..|+-.. + +.
T Consensus 171 a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rq-------------y--Pv--- 232 (415)
T COG3919 171 AADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQ-------------Y--PV--- 232 (415)
T ss_pred ccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhc-------------C--Cc---
Confidence 5556666532 3459999999977653222 223222 2 112222110 0 00
Q ss_pred cccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 253 AAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 253 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+........++++...+-+.|+++-+..+- .|..||+..|..+| .|.++|||--|+
T Consensus 233 ------dfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDG-s~KlldvNpRpw 289 (415)
T COG3919 233 ------DFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDG-SYKLLDVNPRPW 289 (415)
T ss_pred ------ccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCC-ceeEEeecCCCc
Confidence 001111123444444455666666665554 45569999998777 799999999987
No 85
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.41 E-value=1.9e-07 Score=89.13 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=35.8
Q ss_pred ccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc----cCCCeEEEecccCC----Ce-
Q 019076 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----LEPPMLLQEFVNHG----GI- 211 (346)
Q Consensus 141 ~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~----l~~p~v~QEfI~h~----G~- 211 (346)
.+|+|..+..+........ ...-.--+|+||.. |+ .+.|+.++.+.+++.+ ...++|+|+||+.+ |+
T Consensus 42 ~~p~t~~l~~~~~~~~~~~-~~~~~~~wI~KP~~--~~-rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grK 117 (292)
T PF03133_consen 42 FYPETFILPQDYKEFLKYF-EKNPKNLWIVKPSN--GS-RGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRK 117 (292)
T ss_dssp -------HHHHHHHHHHHH-HTTS---EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-
T ss_pred CCcceEecHHHHHHHHHHH-hcCCCCEEEEeccc--cC-CCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeee
Confidence 5788887743222222211 11112359999976 54 6899999999999885 46789999999865 65
Q ss_pred -EEEEEEE
Q 019076 212 -LFKIYII 218 (346)
Q Consensus 212 -~~KV~Vv 218 (346)
|+|+||+
T Consensus 118 FDlR~yvl 125 (292)
T PF03133_consen 118 FDLRVYVL 125 (292)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 7899887
No 86
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.26 E-value=2.8e-05 Score=78.41 Aligned_cols=175 Identities=18% Similarity=0.294 Sum_probs=112.7
Q ss_pred CCCeeeeChH-HHHHHhcCHHHHHHHHHhccccCCCCccccCcEE-EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 103 HPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 103 ~p~v~VIDp~-~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~-~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
..|+..|-|+ ++|+...||...-+++.. ++||+=+-+ -...+.+.+ .. ....++||+++|+.. +| +
T Consensus 93 ~~Gi~FiGP~~~aIrdMG~K~~sk~im~~-------AgVp~vpG~~g~~qs~e~~-~~-~a~eIgyPvMiKa~~-GG--G 160 (670)
T KOG0238|consen 93 DAGITFIGPPPSAIRDMGDKSTSKQIMKA-------AGVPLVPGYHGEDQSDEEA-KK-VAREIGYPVMIKATA-GG--G 160 (670)
T ss_pred HcCCeEECCCHHHHHHhcchHHHHHHHHh-------cCCccccCcccccccHHHH-HH-HHHhcCCcEEEEecc-CC--C
Confidence 4678888765 678888899888788775 455543322 111111112 11 346799999999985 33 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCEE----EEEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGETI----KVVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~v----~~~~R~-Slp~~~~~~~~~~~ 242 (346)
+.+|-++.+++++.+. +..++++.||. +.|-+-|-|.||+. ..-+|- |+.. + +
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~-npRHiEvQv~gD~hGnav~l~ERdCSvQR------R-n- 231 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID-NPRHIEVQVFGDKHGNAVHLGERDCSVQR------R-N- 231 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhcc-CCceEEEEEEecCCCcEEEecccccchhh------h-h-
Confidence 7899999999887653 45799999998 46667888888883 222221 2110 0 0
Q ss_pred ceeecccccccccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019076 243 SVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+. .... ...| .++ ....+.+.|+++++++|-.-+| |.+|.|.. +.+|++|+|.-=.
T Consensus 232 ------QK-----iiEE-aPap---~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~--~~FyFmEmNTRLQ 290 (670)
T KOG0238|consen 232 ------QK-----IIEE-APAP---NLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSK--DNFYFMEMNTRLQ 290 (670)
T ss_pred ------hh-----hhhc-CCCC---CCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCC--CcEEEEEeeceee
Confidence 00 0000 0001 111 1345789999999999999999 99999973 3799999997544
No 87
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.12 E-value=2.1e-05 Score=71.23 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=58.2
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcE-EEecCcCCCCCCceeeEEEeChhhhhc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPL-VAKPLVVDGSAKSHELFLAYDRFSLSE--- 195 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPv-VvKP~~a~GS~~sh~m~lv~~~~~L~~--- 195 (346)
+|..+-+.+++ ++|||+++.+.. +.++..+.+.. ..+|+ |+| +||.+.+.+|.++.+.++..+
T Consensus 2 SK~faK~fm~~-------~~IPTa~~~~f~-~~~~A~~~l~~--~~~p~~ViK---adGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKR-------YGIPTAKYKVFT-DYEEALEYLEE--QGYPYVVIK---ADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHH-------TT-SB--EEEES-SHHHHHHHHHH--HSSSEEEEE---ESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHH-------cCCCCCCeeEEC-CHHHHHHHHHh--cCCCceEEc---cCCCCCCCEEEEeCCHHHHHHHHH
Confidence 45555666775 699999888875 44444444443 46788 999 557778899999999865322
Q ss_pred -c---------CCCeEEEecccCCCeEEEEEEE--CCEEE
Q 019076 196 -L---------EPPMLLQEFVNHGGILFKIYII--GETIK 223 (346)
Q Consensus 196 -l---------~~p~v~QEfI~h~G~~~KV~Vv--G~~v~ 223 (346)
+ ..++|+|||+ .|..+-++++ |+++.
T Consensus 69 ~~~~~~~fg~~~~~vvIEE~l--~G~E~S~~a~~dG~~~~ 106 (194)
T PF01071_consen 69 EIFVDRKFGDAGSKVVIEEFL--EGEEVSLFALTDGKNFV 106 (194)
T ss_dssp HHHTSSTTCCCGSSEEEEE-----SEEEEEEEEEESSEEE
T ss_pred HhccccccCCCCCcEEEEecc--CCeEEEEEEEEcCCeEE
Confidence 1 3579999999 5998887666 77754
No 88
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.05 E-value=0.00023 Score=70.93 Aligned_cols=138 Identities=19% Similarity=0.312 Sum_probs=99.6
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHh-cCHHHH
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHL-HNRQSM 124 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l-~dR~~~ 124 (346)
..++++|+ +.+++++.|-|+.||.. -..-.|.+ .|++|.=|.....++ .+|..+
T Consensus 53 ~~lv~fA~------~~~idl~vVGPE~pL~~-----------------GvvD~l~~--~Gi~vFGPsk~AA~lE~SK~fa 107 (428)
T COG0151 53 EALVAFAK------EKNVDLVVVGPEAPLVA-----------------GVVDALRA--AGIPVFGPTKAAAQLEGSKAFA 107 (428)
T ss_pred HHHHHHHH------HcCCCEEEECCcHHHhh-----------------hhHHHHHH--CCCceeCcCHHHHHHHhhHHHH
Confidence 56677777 99999999999988752 22233332 578999888766655 488888
Q ss_pred HHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--------
Q 019076 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------- 196 (346)
Q Consensus 125 ~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------- 196 (346)
-..+.+ ++||++.+-+.. +.+.+.+.+ ...+.|+|+| ++|-+.+-++.++.+.++-.+.
T Consensus 108 K~fm~k-------~~IPta~y~~f~-~~e~a~ayi--~~~g~piVVK---adGLaaGKGV~V~~~~eeA~~a~~~~l~~~ 174 (428)
T COG0151 108 KDFMKK-------YGIPTAEYEVFT-DPEEAKAYI--DEKGAPIVVK---ADGLAAGKGVIVAMTLEEAEAAVDEMLEGN 174 (428)
T ss_pred HHHHHH-------cCCCcccccccC-CHHHHHHHH--HHcCCCEEEe---cccccCCCCeEEcCCHHHHHHHHHHHHhhc
Confidence 888886 689999888775 444444443 3578999999 4577778899999998664331
Q ss_pred -----CCCeEEEecccCCCeEEEEEEE--CCEEE
Q 019076 197 -----EPPMLLQEFVNHGGILFKIYII--GETIK 223 (346)
Q Consensus 197 -----~~p~v~QEfI~h~G~~~KV~Vv--G~~v~ 223 (346)
...+|++||+ +|..+-++++ |+.+.
T Consensus 175 ~fg~~g~~VVIEEfL--~GeE~S~~a~~DG~~v~ 206 (428)
T COG0151 175 AFGSAGARVVIEEFL--DGEEFSLQAFVDGKTVI 206 (428)
T ss_pred cccCCCCcEEEEecc--cceEEEEEEEEcCCeEE
Confidence 1459999999 5887766554 77654
No 89
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=97.99 E-value=6.2e-05 Score=76.90 Aligned_cols=176 Identities=14% Similarity=0.206 Sum_probs=112.2
Q ss_pred CCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccc-cCcEEEEccCCCChhhH-HHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVR-VPRQMVITKDSLSIPDQ-VFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~-~P~~~~i~~~~~~~~~~-l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
.|++.|=| +.+|+.+.||...-.++.+ .++| +|-+.= ..++..+. -....++||+.+|... +| +
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~-------AgVp~VPG~~g---~~qd~~~~~~~A~eiGyPVlIKAsa-GG--G 164 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAE-------AGVPTVPGYHG---PIQDAAELVAIAEEIGYPVLIKASA-GG--G 164 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHH-------cCCCccCCCCC---cccCHHHHHHHHHhcCCcEEEEecc-CC--C
Confidence 67888876 5788888999876666665 3454 343331 11222111 1246799999999874 33 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~~ 242 (346)
+.+|-++.+.+++.+. +.-|+++.|+.. -|-+-+-|+||+ |+.-.|- |+.. +
T Consensus 165 GKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSlQR------R--- 234 (645)
T COG4770 165 GKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSLQR------R--- 234 (645)
T ss_pred CCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccchhh------h---
Confidence 8999999999887653 457999999985 555788888887 2333442 3310 0
Q ss_pred ceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCC
Q 019076 243 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
|++-- ..+...-+++. ....+-+-|++++++.|-.-+| |-+|.+.+ + .+|++|+|.-=..
T Consensus 235 -----hQKVI--EEAPaP~l~~~-----~R~amg~aAv~~a~avgY~gAGTVEFivd~~-~-~f~FlEMNTRLQV 295 (645)
T COG4770 235 -----HQKVI--EEAPAPFLTEE-----TREAMGEAAVAAAKAVGYVGAGTVEFIVDAD-G-NFYFLEMNTRLQV 295 (645)
T ss_pred -----cchhh--hcCCCCCCCHH-----HHHHHHHHHHHHHHhcCCCcCceEEEEEcCC-C-cEEEEEeecceec
Confidence 11000 00000011111 1345788999999999999999 99999864 4 4999999975443
No 90
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=97.88 E-value=9.6e-05 Score=78.04 Aligned_cols=172 Identities=17% Similarity=0.282 Sum_probs=110.4
Q ss_pred CCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCcccc-CcEEEEccCCCChhhHH-HhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRV-PRQMVITKDSLSIPDQV-FEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~-P~~~~i~~~~~~~~~~l-~~~~l~fPvVvKP~~a~GS~~ 180 (346)
.|+..|-| ++.++.+.||..--..-.+. ++|+ |-+- ...+.+.+.+ -..+.+||+++|-.+++ +
T Consensus 104 aGI~FIGP~~e~ld~~GdKv~Ar~~A~~a-------gvPvipgt~---~~~~~~ee~~~fa~~~gyPvmiKA~~GG---G 170 (1149)
T COG1038 104 AGITFIGPKPEVLDMLGDKVKARNAAIKA-------GVPVIPGTD---GPIETIEEALEFAEEYGYPVMIKAAAGG---G 170 (1149)
T ss_pred cCCEEeCCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCC---CCcccHHHHHHHHHhcCCcEEEEEccCC---C
Confidence 67888877 67788888998654444432 4432 2110 0111122211 13568999999987644 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~~ 242 (346)
+++|-+|.++++|.+. +..++++.||. +.+-+-|-++||+ |+.++|- |... +
T Consensus 171 GRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCSvQR------R--- 240 (1149)
T COG1038 171 GRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVHLFERDCSVQR------R--- 240 (1149)
T ss_pred ccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEEEeecccchhh------c---
Confidence 8999999999988653 45799999998 4666889999988 4556663 2210 0
Q ss_pred ceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccC
Q 019076 243 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINY 312 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~ 312 (346)
|+.- -..+....++++ ...++-+-|.++++..|-.-+| +.++.+.+ | ++|+||||-
T Consensus 241 -----hQKV--VE~APa~~L~~~-----~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~-~fyFIEvNP 297 (1149)
T COG1038 241 -----HQKV--VEVAPAPYLSPE-----LRDEICDDAVKLARNIGYINAGTVEFLVDED-G-KFYFIEVNP 297 (1149)
T ss_pred -----ccee--EEecCCCCCCHH-----HHHHHHHHHHHHHHHcCCcccceEEEEEcCC-C-cEEEEEecC
Confidence 1100 000101122221 2456788999999999999999 99999864 4 689999994
No 91
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=97.47 E-value=0.0013 Score=68.47 Aligned_cols=175 Identities=16% Similarity=0.259 Sum_probs=108.2
Q ss_pred CCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCcccc-CcEE-EEccCCCChhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 103 HPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRV-PRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 103 ~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~-P~~~-~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
..|+..|-| |+-|..+.||..--++-.+. ++|+ |-|= -+. ..++..+.. ...++|+|.|-.. |.
T Consensus 129 ~AGi~fiGPspeVi~~mGDKv~AR~~Ai~a-------gVpvVPGTpgPit-t~~EA~eF~--k~yG~PvI~KAAy--GG- 195 (1176)
T KOG0369|consen 129 DAGIRFIGPSPEVIDSMGDKVAARAIAIEA-------GVPVVPGTPGPIT-TVEEALEFV--KEYGLPVIIKAAY--GG- 195 (1176)
T ss_pred hcCceEeCCCHHHHHHhhhHHHHHHHHHHc-------CCCccCCCCCCcc-cHHHHHHHH--HhcCCcEEEeecc--cC-
Confidence 357777765 67788889998655554443 4432 1110 000 111122222 3578999999655 44
Q ss_pred CceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhcc
Q 019076 180 KSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKV 241 (346)
Q Consensus 180 ~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~ 241 (346)
++++|-+|..-+++++. +..+.++.|++. -+-+-|-.+||+ ++.++|- |... +
T Consensus 196 GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSvQR------R-- 266 (1176)
T KOG0369|consen 196 GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSVQR------R-- 266 (1176)
T ss_pred CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccchhh------h--
Confidence 58999999998776542 467999999986 455788888888 4455653 2110 0
Q ss_pred cceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCC
Q 019076 242 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 242 ~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fP 314 (346)
|+.- -..+.-..++|. ..+.+..-|.++++..|-.-+| +.+++|. .| ++|+||||.-=
T Consensus 267 ------HQKV--VEiAPA~~Lp~~-----vR~~~~~davklAk~vgY~NAGTvEFLvD~-~g-~hYFIEvN~Rl 325 (1176)
T KOG0369|consen 267 ------HQKV--VEIAPAKTLPPE-----VRDAILTDAVKLAKHVGYENAGTVEFLVDQ-KG-RHYFIEVNPRL 325 (1176)
T ss_pred ------hcce--eEecccccCCHH-----HHHHHHHHHHHHHHHhCcccCCceEEEEcc-CC-CEEEEEecCce
Confidence 1100 000101122221 1345677899999999999999 9999986 45 68999999643
No 92
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.04 E-value=0.06 Score=50.38 Aligned_cols=184 Identities=15% Similarity=0.214 Sum_probs=101.0
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
|.-.-...|.||+..-.-+++.. .....|+.+-+..+.++ +....|.-++|+||..+||+ ..++.+
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~~-----g~~~l~pll~v~~~~~~----i~~~~Lp~~fViK~nhgsg~-----~~i~~d 75 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEKI-----GEEYLPPLLGVYDNPDD----IDFDSLPDKFVIKPNHGSGS-----NIIVRD 75 (239)
T ss_pred CCCccceecchHHHHHHHHHHhC-----CCceECceeecCCChhh----hhhhcCCCCEEEEEecCCCc-----EEEEeC
Confidence 34445567788987766666531 23345555544323222 23456778999998874442 344443
Q ss_pred hhh-----hh----c-----------------cCCCeEEEecccCC-C---eEEEEEEECCEEEEEEeecCCCcccchhh
Q 019076 190 RFS-----LS----E-----------------LEPPMLLQEFVNHG-G---ILFKIYIIGETIKVVRRFSLPNVSKRELA 239 (346)
Q Consensus 190 ~~~-----L~----~-----------------l~~p~v~QEfI~h~-G---~~~KV~VvG~~v~~~~R~Slp~~~~~~~~ 239 (346)
... ++ . +.+-+++++|+... | +|||+||.++++.+..--+-..- ..
T Consensus 76 k~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~---~~- 151 (239)
T PF14305_consen 76 KSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFG---NH- 151 (239)
T ss_pred CcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCC---Ce-
Confidence 321 11 1 13459999999987 4 59999999997543221111100 00
Q ss_pred cccceee--cccccccccccCCCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 240 KVVSVFR--FPRVSSAAASADDADLDPGIAELP-PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 240 ~~~g~~~--~~~vs~~~~~~~~~~~~~~~~~~p-~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
....|+ +..+.-.... . . ....+.| .-+++.++|.+|++- ..+.-||+-..+ ++.|+=|+=.+||-
T Consensus 152 -~~~~yd~dw~~l~~~~~~--~--~-~~~~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~---~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 152 -KRNFYDRDWNRLPFRSDY--P--P-DEDIPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD---GKIYFGELTFTPGA 220 (239)
T ss_pred -EEEEECcccCCCccccCC--C--C-CCCCCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC---CcEEEEeeecCCCC
Confidence 001111 1111000000 0 0 0111222 235688899988886 557789999754 37999999999996
Q ss_pred CCCccc
Q 019076 317 GKMPDY 322 (346)
Q Consensus 317 ~gv~~~ 322 (346)
.-.+-+
T Consensus 221 G~~~~~ 226 (239)
T PF14305_consen 221 GFEPFF 226 (239)
T ss_pred cCCCCC
Confidence 644433
No 93
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=96.81 E-value=0.0056 Score=66.06 Aligned_cols=194 Identities=21% Similarity=0.316 Sum_probs=119.6
Q ss_pred Ceeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 105 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 105 ~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
++.|+ -+|+.|...-||+...+.|.++ +|..|.+-.+.+ -++... -...++||+++.|-.-- | +-.
T Consensus 1017 ~~kilGTsP~~ID~AEnR~kFS~~Ld~i-------~v~Qp~Wkelt~-~~eA~~--F~~~VgYP~lvRPSYVL-S--GaA 1083 (1435)
T KOG0370|consen 1017 GVKILGTSPEMIDSAENRFKFSRMLDSI-------GVDQPAWKELTS-LEEAKK--FAEKVGYPVLVRPSYVL-S--GAA 1083 (1435)
T ss_pred CCeEecCChHhhhhhhhHHHHHHHHHHc-------CCCchhhhhhcc-HHHHHH--HHHhcCCceEeccccee-c--chh
Confidence 34443 4689999999999999999975 677787655532 222212 13568999999995321 1 236
Q ss_pred eEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE-EEEEEeecCCCcccchhhcccceeeccccccc
Q 019076 184 LFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET-IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA 253 (346)
Q Consensus 184 m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~-v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~ 253 (346)
|.+++++++|+.. +.|+|+-.||+ +++.+-|=.|+.. -.++.--|- . ..|.| +.++
T Consensus 1084 Mnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie-~AkEidvDAVa~~G~~~~haiSE-H------vEnAG------VHSG 1149 (1435)
T KOG0370|consen 1084 MNVVYSESDLKSYLEQASAVSPDHPVVISKFIE-GAKEIDVDAVASDGKVLVHAISE-H------VENAG------VHSG 1149 (1435)
T ss_pred hhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhc-ccceechhhhccCCeEEEEehhh-h------hhccc------ccCC
Confidence 9999999999864 57999999998 5676665444322 111111121 1 11111 1111
Q ss_pred ccccCCCCC-CCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEecc-----CCCCCCCCcccHH
Q 019076 254 AASADDADL-DPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDIN-----YFPGYGKMPDYEH 324 (346)
Q Consensus 254 ~~~~~~~~~-~~~~~~~p--~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN-----~fPg~~gv~~~~~ 324 (346)
++.+ -|. ..+. ..+.+++++.+++++|..+ =|++-+|..+ |...|||-| .||-..+.-++
T Consensus 1150 -----DAtlv~Pp-q~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lkVIECN~RaSRSFPFvSKtlgv-- 1218 (1435)
T KOG0370|consen 1150 -----DATLVLPP-QDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD---NELKVIECNVRASRSFPFVSKTLGV-- 1218 (1435)
T ss_pred -----ceeEeCCc-hhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC---CeEEEEEeeeeeeccccceehhcCc--
Confidence 1111 110 0010 1345889999999999986 4778888653 579999999 58877766655
Q ss_pred HHHHHHHHHHHh
Q 019076 325 IFTDFLLSLEQS 336 (346)
Q Consensus 325 ~l~~~l~~~i~~ 336 (346)
-|++.-.+.+..
T Consensus 1219 dfi~~At~~i~g 1230 (1435)
T KOG0370|consen 1219 DFIALATRAIMG 1230 (1435)
T ss_pred hHHHHHHHHHhC
Confidence 344444444444
No 94
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=96.77 E-value=0.003 Score=62.94 Aligned_cols=88 Identities=22% Similarity=0.198 Sum_probs=60.3
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCC-CcEEEecCcCC-CCCCceeeEEEeChhhhhcc----
Q 019076 123 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVD-GSAKSHELFLAYDRFSLSEL---- 196 (346)
Q Consensus 123 ~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-fPvVvKP~~a~-GS~~sh~m~lv~~~~~L~~l---- 196 (346)
..-++|++ .+||||++.++. +.++..+ ....++ ||+|+||..-. |...+.++.++.+.+++.+.
T Consensus 7 ~aK~ll~~-------~GIpvp~~~~~~-~~~ea~~--~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l 76 (386)
T TIGR01016 7 QAKQIFAK-------YGIPVPRGYVAT-SVEEAEE--IAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKL 76 (386)
T ss_pred HHHHHHHH-------cCCCCCCceeeC-CHHHHHH--HHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHH
Confidence 34456664 699999999884 3332222 234578 99999997322 33345689999888776431
Q ss_pred -C---------------CCeEEEecccCCCeEEEEEEECCE
Q 019076 197 -E---------------PPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 197 -~---------------~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
. ..+++|||+++ |+.+-|-+++|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~vlVEe~v~~-g~E~~v~i~~d~ 116 (386)
T TIGR01016 77 LGKELVTNQTDPLGQPVNKILIEEATDI-DKEYYLSIVIDR 116 (386)
T ss_pred hccceeecccCCCCCEeeEEEEEECccC-CceEEEEEEEcC
Confidence 1 14899999964 888888888875
No 95
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=96.54 E-value=0.0065 Score=60.60 Aligned_cols=90 Identities=21% Similarity=0.134 Sum_probs=61.5
Q ss_pred HHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCC-CCcEEEecCcC-CCCCCceeeEEEeChhhhhcc--
Q 019076 121 RQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 121 R~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l-~fPvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.+.+.++|.+ ++||+|++.++. +.++..+ ....+ +||+|+||..- .|.+.+++|.+..+.+++.+.
T Consensus 5 e~~ak~lL~~-------~gIpvp~~~~~~-~~~ea~~--~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~ 74 (388)
T PRK00696 5 EYQAKELFAK-------YGVPVPRGIVAT-TPEEAVE--AAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAK 74 (388)
T ss_pred HHHHHHHHHH-------cCCCCCCCeeeC-CHHHHHH--HHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHH
Confidence 3455566664 699999999885 3333322 22457 89999999742 344567799999888776431
Q ss_pred ----C-----------C---CeEEEecccCCCeEEEEEEECCE
Q 019076 197 ----E-----------P---PMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 197 ----~-----------~---p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
. . .+++|+|+++ |..+-+.+..|.
T Consensus 75 ~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~-~~E~~vg~~~D~ 116 (388)
T PRK00696 75 QILGMTLVTHQTGPKGQPVNKVLVEEGADI-AKEYYLSIVLDR 116 (388)
T ss_pred HhhccceeeeccCCCCCEEeEEEEEeccCC-CceEEEEEEEcC
Confidence 0 1 2899999964 778877777665
No 96
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.007 Score=61.64 Aligned_cols=73 Identities=15% Similarity=0.359 Sum_probs=47.4
Q ss_pred ccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhccCCCeEEEecccCC------CeEEE
Q 019076 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHG------GILFK 214 (346)
Q Consensus 141 ~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~------G~~~K 214 (346)
..|+++++..|-+++.+......-.. +||||-. |+.+-|+.++.....+.+ ..|+++|+||... -.|.+
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~-wIVkppa---saRg~gIrv~~kw~q~pk-~rpLvvQ~yieRP~ling~KFDlr 356 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEKNASRL-WIVKPPA---SARGIGIRVINKWSQFPK-DRPLVVQKYIERPLLINGSKFDLR 356 (662)
T ss_pred ccceeeeccccHHHHHHHHhhCcccc-EEecCcc---cccCcceEeccchhhCCC-cccHHHHHHhhcceeecCcceeEE
Confidence 68999988545444444333212222 8899874 445668888887776653 5699999998654 34667
Q ss_pred EEEE
Q 019076 215 IYII 218 (346)
Q Consensus 215 V~Vv 218 (346)
+||+
T Consensus 357 lYv~ 360 (662)
T KOG2156|consen 357 LYVV 360 (662)
T ss_pred EEEE
Confidence 6665
No 97
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=95.42 E-value=0.6 Score=39.59 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=65.4
Q ss_pred cEEEecCcCCCCCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcc
Q 019076 167 PLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKV 241 (346)
Q Consensus 167 PvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~ 241 (346)
|+-+||.. .+ +.-.=.++...+.|... +.++++.|.++ =...||+||+.++++...+..- +
T Consensus 3 ~~FiKP~~--~~-K~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~~-~--------- 68 (130)
T PF14243_consen 3 PVFIKPPD--DD-KSFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYRG-D--------- 68 (130)
T ss_pred CeEeCCCC--CC-CcceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecCC-C---------
Confidence 78889874 12 22111233334444432 56899999996 3778999999999988665421 1
Q ss_pred cceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHH-HHhCCcEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 242 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR-HRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 242 ~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~-~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
....+ ..+.+......+. ....-.-|.+||=+.. +| +.+|||+|.+=+
T Consensus 69 ------------------~~~~~------~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 69 ------------------WDLEP------DPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DG-GWALVEANDGWS 117 (130)
T ss_pred ------------------cccCC------CHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CC-CEEEEEecCccc
Confidence 01110 1222333333332 1556778889998874 44 689999997654
No 98
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.1 Score=53.73 Aligned_cols=56 Identities=13% Similarity=0.294 Sum_probs=43.3
Q ss_pred CCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc------------CCCeEEEecccCC----Ce--EEEEEEECCE
Q 019076 163 GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------------EPPMLLQEFVNHG----GI--LFKIYIIGET 221 (346)
Q Consensus 163 ~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l------------~~p~v~QEfI~h~----G~--~~KV~VvG~~ 221 (346)
+=..+.|+||- +.+.+.|+.++.+.+.+.+. +..+++|-||+++ |. ++|.||+=.+
T Consensus 197 ~~~~~wIvKP~---~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~ 270 (497)
T KOG2157|consen 197 SERSWWIVKPA---SKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTH 270 (497)
T ss_pred cccceEEeccc---cccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeec
Confidence 45789999975 45588999999988886554 3569999999987 44 5588888655
No 99
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=95.03 E-value=0.078 Score=53.93 Aligned_cols=139 Identities=22% Similarity=0.338 Sum_probs=84.7
Q ss_pred cCCcEEEEecCCCCCC-------CC-CCccEEEEcccchhh-------HHHHHHHHHhCCCeeeeChHHHHHHhcCHHHH
Q 019076 60 NKGISFVAIDQNRPLS-------DQ-GPFDVVLHKLSGMEW-------CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSM 124 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~-------~q-~~fDvilhK~t~~~~-------~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~ 124 (346)
++|++.+..|++. |+ .+ .+.|+|.=|+.+.+. ...++.|.. ..+++++|+.+ +.++||..
T Consensus 211 ~~G~~~vI~d~~~-L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~--~av~~vgsfrs-~l~hnK~i- 285 (445)
T PF14403_consen 211 EHGYDCVICDPRD-LEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRD--GAVCMVGSFRS-QLLHNKII- 285 (445)
T ss_pred HcCCceEecChHH-ceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhc--CCeEEecchhh-hhhhhhHH-
Confidence 8999999999965 33 12 378999888766322 344566654 45999999655 66799953
Q ss_pred HHHHHh-cc---ccC-CCC--ccccCcEEEEcc-------CCCChhhH-HHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 125 LQDVAD-LN---LSD-CNG--KVRVPRQMVITK-------DSLSIPDQ-VFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 125 ~~~L~~-l~---~~~-~~~--~I~~P~~~~i~~-------~~~~~~~~-l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
...|.+ .. ++. .+. .=.+|-|..+.. ...++.+. ++.. ==+|+||.-.. +||||++=-+
T Consensus 286 FaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r---~~lVLKP~D~Y---gg~GV~~G~e 359 (445)
T PF14403_consen 286 FAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANR---DRLVLKPNDEY---GGKGVYIGWE 359 (445)
T ss_pred HHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhch---hcEEecccccc---CCCCeEECCc
Confidence 444432 11 110 000 125899998854 11222222 1222 25999998744 4688877544
Q ss_pred --hhhhh----c-cCCCeEEEecccCC
Q 019076 190 --RFSLS----E-LEPPMLLQEFVNHG 209 (346)
Q Consensus 190 --~~~L~----~-l~~p~v~QEfI~h~ 209 (346)
.++.+ + ++.|+|+|||+.-.
T Consensus 360 ~~~eeW~~~l~~a~~~~yilQe~v~~~ 386 (445)
T PF14403_consen 360 TSPEEWEAALEEAAREPYILQEYVRPP 386 (445)
T ss_pred CCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 34433 3 36799999999764
No 100
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=94.80 E-value=0.23 Score=56.38 Aligned_cols=194 Identities=12% Similarity=0.189 Sum_probs=114.7
Q ss_pred HHHHHhCCCeeeeChHH-HHHHhcCHHHHHHHHHhccccC---CCCccccCcEE-----E-EccC------CCChhhHH-
Q 019076 97 EDYRQKHPEVTILDPPD-AIKHLHNRQSMLQDVADLNLSD---CNGKVRVPRQM-----V-ITKD------SLSIPDQV- 159 (346)
Q Consensus 97 ~~y~~~~p~v~VIDp~~-ai~~l~dR~~~~~~L~~l~~~~---~~~~I~~P~~~-----~-i~~~------~~~~~~~l- 159 (346)
-+.+..+ +++.|-||. ++.-+.||+...-+-+..+++- ...+|.++..- + +..+ ..+..+.+
T Consensus 155 Pe~L~~~-~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLe 233 (2196)
T KOG0368|consen 155 PERLSAN-GIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLE 233 (2196)
T ss_pred HHHHHhc-CcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHH
Confidence 3444443 588998886 4566779998777766655431 12345444432 1 1100 01111222
Q ss_pred HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecC
Q 019076 160 FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSL 230 (346)
Q Consensus 160 ~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Sl 230 (346)
+...+|||+.+|--.++ ++.|+-.+.+.+++..+ ..|+.+-.-.. ++|-+-|-.++|++--+.--.-
T Consensus 234 aae~IGfPvMIKASEGG---GGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~-~ARHlEVQlLaDqYGn~IsLfg 309 (2196)
T KOG0368|consen 234 AAEKIGFPVMIKASEGG---GGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLAD-QARHLEVQLLADQYGNVISLFG 309 (2196)
T ss_pred HHHhcCCceEEEeccCC---CCcceeeccchHHHHHHHHHHHhhCCCCceeeeeccc-CcceeeeehhhhhcCCEeEeec
Confidence 23459999999977644 46889999999998875 45787777775 4666777777777421111011
Q ss_pred CCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEe
Q 019076 231 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVID 309 (346)
Q Consensus 231 p~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViD 309 (346)
.|.+. ... |+.- -..-++.+.| ...-..+++-|.++++..|--=+| |..+....+| +||++|
T Consensus 310 RDCSi---QRR------hQKI---IEEAPatIap----~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~-~fyFLE 372 (2196)
T KOG0368|consen 310 RDCSI---QRR------HQKI---IEEAPATIAP----PETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG-EYYFLE 372 (2196)
T ss_pred ccchH---HHH------HHHH---HhhCCcccCC----HHHHHHHHHHHHHHHHhhcceecceEEEEEecCCC-cEEEEe
Confidence 12110 000 1100 0000112211 111356899999999999999999 9999987665 899999
Q ss_pred ccC
Q 019076 310 INY 312 (346)
Q Consensus 310 VN~ 312 (346)
.|-
T Consensus 373 LNP 375 (2196)
T KOG0368|consen 373 LNP 375 (2196)
T ss_pred cCc
Confidence 994
No 101
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=93.69 E-value=0.066 Score=49.63 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=44.8
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCC--CCceeeEE-EeChhhhhc
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS--AKSHELFL-AYDRFSLSE 195 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS--~~sh~m~l-v~~~~~L~~ 195 (346)
++-....++|.. .||++|++.++.+ .++..+ ....++||+++|-..++=. ++..++.+ +.++++++.
T Consensus 10 L~e~e~~~lL~~-------yGI~~~~~~~~~~-~~ea~~--~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~ 79 (222)
T PF13549_consen 10 LTEAEAKELLAA-------YGIPVPPTRLVTS-AEEAVA--AAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVRE 79 (222)
T ss_dssp E-HHHHHHHHHT-------TT------EEESS-HHHHHH--HHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHH
T ss_pred cCHHHHHHHHHH-------cCcCCCCeeEeCC-HHHHHH--HHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHH
Confidence 344566777774 6999999999853 322222 2346899999997654311 13345666 667766643
Q ss_pred c-----------C-----CCeEEEecccCCCeEEEEEEECC
Q 019076 196 L-----------E-----PPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 196 l-----------~-----~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
. . ..+++|+.++++|..+-|.+.-|
T Consensus 80 a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~D 120 (222)
T PF13549_consen 80 AFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRD 120 (222)
T ss_dssp HHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEEC
Confidence 2 1 24899999987788877665544
No 102
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=90.39 E-value=0.77 Score=41.93 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=43.5
Q ss_pred CccccCcEEEEccCCCChhhHHHhhCCCC-cEEEecCcC-CCCCCceeeEEEeChhhhhcc---------C---------
Q 019076 138 GKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVV-DGSAKSHELFLAYDRFSLSEL---------E--------- 197 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~f-PvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l---------~--------- 197 (346)
++|++|+..++.+ .++..+.. ..++. ++|+|+.+- +|--.+-++-++.+.++.... .
T Consensus 14 ~gi~vp~g~~a~s-~eea~~~~--~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~ 90 (202)
T PF08442_consen 14 YGIPVPRGVVATS-PEEAREAA--KELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGE 90 (202)
T ss_dssp TT----SEEEESS-HHHHHHHH--HHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEE
T ss_pred cCCCCCCeeecCC-HHHHHHHH--HHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCC
Confidence 6999999999963 33333322 23444 689999544 455566789999998776542 1
Q ss_pred --CCeEEEecccCCCeEEEEEEE
Q 019076 198 --PPMLLQEFVNHGGILFKIYII 218 (346)
Q Consensus 198 --~p~v~QEfI~h~G~~~KV~Vv 218 (346)
.-++++|+++|..-.|=-+++
T Consensus 91 ~v~~vlvee~v~~~~E~Ylsi~~ 113 (202)
T PF08442_consen 91 KVNKVLVEEFVDIKREYYLSITL 113 (202)
T ss_dssp EE--EEEEE---CCEEEEEEEEE
T ss_pred EeeEEEEEecCccCceEEEEEEe
Confidence 137999999987555533333
No 103
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=89.28 E-value=3.1 Score=40.33 Aligned_cols=91 Identities=18% Similarity=0.349 Sum_probs=61.9
Q ss_pred CeEEEecccCC-CeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHH
Q 019076 199 PMLLQEFVNHG-GILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLER 277 (346)
Q Consensus 199 p~v~QEfI~h~-G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~ 277 (346)
-+++.+|++-+ +..|||||-+.+++++..+.. +... .+. .... .....+.+
T Consensus 151 ~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~~~-~L~---------------------~~~~-----~I~~~I~~ 202 (299)
T PF07065_consen 151 ELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NYYD-FLE---------------------ELKE-----EIRSKIQE 202 (299)
T ss_pred EEEEeccccCCccceEEEEEECCEEEEEecccc-cccH-HHH---------------------HHHH-----HHHHHHHH
Confidence 37899998766 889999999999887655544 3210 000 0000 01223444
Q ss_pred HH-HHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 278 LA-RELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 278 lA-~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
.. ..+...+.+.=|-|||.+... .++.++||+|-|-+-.+
T Consensus 203 F~~~~I~~~~~~~~~v~DVyi~~~-~~~v~LID~NPf~~~Td 243 (299)
T PF07065_consen 203 FFEEHIKPKFPLDNYVFDVYITRD-KDKVWLIDFNPFGPRTD 243 (299)
T ss_pred HHHHHHHhhCCCCCEEEEEEEcCC-CCeEEEEEecCCcccCc
Confidence 44 566888999999999999864 24899999999988554
No 104
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=87.85 E-value=32 Score=36.48 Aligned_cols=130 Identities=14% Similarity=0.218 Sum_probs=83.8
Q ss_pred cccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHH-hcCHHHHHHHHHhccccCC
Q 019076 58 HTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKH-LHNRQSMLQDVADLNLSDC 136 (346)
Q Consensus 58 ~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~-l~dR~~~~~~L~~l~~~~~ 136 (346)
+.++.|.+|.+-|+.||..- +.+ .+. .-|+++.-|..--.. =.+|..+-..+.+
T Consensus 64 ~~e~~I~lVvvGPE~PL~~G---------l~~--------~l~--~~gi~~FGPs~~aAqlE~sK~fsK~fm~r------ 118 (788)
T KOG0237|consen 64 CKEHNINLVVVGPELPLVAG---------LAD--------VLR--SAGIPCFGPSKQAAQLEASKNFSKDFMHR------ 118 (788)
T ss_pred HHHcceeEEEECCchhhhhh---------hhh--------hhh--ccCcceeCchHHHHHhhhhHHHHHHHHHh------
Confidence 34899999999999988531 111 111 235777777643333 3466555555554
Q ss_pred CCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhh-hhcc------------CCCeEEE
Q 019076 137 NGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS-LSEL------------EPPMLLQ 203 (346)
Q Consensus 137 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~-L~~l------------~~p~v~Q 203 (346)
++|||-++-... +++.....+. ..--+++|+| |+|-+-+.++.+..+.++ ++.+ ..-+|++
T Consensus 119 -~~IPTA~y~~ft-~~e~a~sfi~-~~~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViE 192 (788)
T KOG0237|consen 119 -HNIPTAKYKTFT-DPEEAKSFIQ-SATDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIE 192 (788)
T ss_pred -cCCCcceeeeeC-CHHHHHHHHH-hCCCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehh
Confidence 689999887764 4444433332 2223789999 889988999999988654 3322 3569999
Q ss_pred ecccCCCeEEEEEEECC
Q 019076 204 EFVNHGGILFKIYIIGE 220 (346)
Q Consensus 204 EfI~h~G~~~KV~VvG~ 220 (346)
||.+ |-...++..=|
T Consensus 193 E~LE--GeEvS~laftD 207 (788)
T KOG0237|consen 193 ELLE--GEEVSFLAFTD 207 (788)
T ss_pred hhcC--cceEEEEEEec
Confidence 9995 66666655533
No 105
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=87.37 E-value=2.1 Score=43.07 Aligned_cols=79 Identities=11% Similarity=-0.034 Sum_probs=52.1
Q ss_pred CccccCcEEEEccCCCChhhHHHhhCCCCc-EEEecCc-CCCCCCceeeEEEeChhhhhcc-----C-------------
Q 019076 138 GKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLV-VDGSAKSHELFLAYDRFSLSEL-----E------------- 197 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~fP-vVvKP~~-a~GS~~sh~m~lv~~~~~L~~l-----~------------- 197 (346)
.||++|++.++.+ .++..+ ....++|| +|+|..+ ..|-..+.++.+..+.+++... .
T Consensus 15 yGIpvp~~~~~~~-~~ea~~--~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~ 91 (392)
T PRK14046 15 FGVAVPRGALAYS-PEQAVY--RARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGK 91 (392)
T ss_pred cCCCCCCceEECC-HHHHHH--HHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhhccCCCCC
Confidence 6999999998853 333322 23468995 5999754 3455677889998888776542 0
Q ss_pred --CCeEEEecccCCCeEEEEEEECC
Q 019076 198 --PPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 198 --~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
.-+++|+++++ ++.|-+-+.-|
T Consensus 92 ~v~~vlVe~~~~~-~~E~ylgi~~D 115 (392)
T PRK14046 92 PVQRVYVETADPI-ERELYLGFVLD 115 (392)
T ss_pred eeeeEEEEEecCC-CcEEEEEEEEC
Confidence 12899999985 45555544433
No 106
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=86.57 E-value=9.8 Score=38.39 Aligned_cols=163 Identities=20% Similarity=0.314 Sum_probs=89.7
Q ss_pred Hhhhcc-cccCCcEEEEecCCCC-CCCCC---------CccEEEEcccchhhHHHHHHHH--HhCCCeeeeChHHHHHHh
Q 019076 52 ARYILT-HTNKGISFVAIDQNRP-LSDQG---------PFDVVLHKLSGMEWCKIIEDYR--QKHPEVTILDPPDAIKHL 118 (346)
Q Consensus 52 ~r~~~~-~~~~Gi~~v~id~~~~-l~~q~---------~fDvilhK~t~~~~~~~l~~y~--~~~p~v~VIDp~~ai~~l 118 (346)
++|+.. +++.|++...+++..- +.+.| +.|++ -|+..-+|... .+|. -.+.++.+|||+-++- +
T Consensus 193 ~~yL~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~l-fKlyPwE~~~~-e~~~~~l~~~~~~~ieP~wk~l-l 269 (397)
T PHA02117 193 IAYLAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMC-FKLYPWEWMME-DEFSAEILVSQTRFIEPAWKMM-L 269 (397)
T ss_pred HHHHHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeee-eecccHHHHhh-CcchhhhhhCCcEEechhHHhH-h
Confidence 444444 4578888777666431 11222 23333 35554333211 1221 0135699999987765 4
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCC-CcEEEecCcCCCCCCceeeEEEeChhhhhcc-
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGSAKSHELFLAYDRFSLSEL- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l- 196 (346)
.|| .++.+|.++.- .+.--.|.+. +.+..... ...++ -..|.||+. |- ++.+|.|+.+...+...
T Consensus 270 snK-alLalLW~l~p---~hp~LLpay~----~~d~~~~~--~~~~~~~~yV~KPi~--gR-EG~nV~i~~~g~~~~~~~ 336 (397)
T PHA02117 270 SNK-GLLALLYERYP---DCPWLVPAYV----EDDFDREN--LFTLENPKYVSKPLL--SR-EGNNIHIFEYGGESEDTD 336 (397)
T ss_pred ccH-HHHHHHHHhcC---CCcccccccc----cccccccc--hhccccCCEEeccCC--Cc-CCCCEEEEECCeEEeccC
Confidence 888 66778877531 1222333222 11100000 00011 149999998 54 77889998664333222
Q ss_pred ----CCCeEEEecccCC---Ce--EEEEEEECCEEE-EEEeecC
Q 019076 197 ----EPPMLLQEFVNHG---GI--LFKIYIIGETIK-VVRRFSL 230 (346)
Q Consensus 197 ----~~p~v~QEfI~h~---G~--~~KV~VvG~~v~-~~~R~Sl 230 (346)
+.++|.|+|++=+ |. .+=++|||++.. +..|.+.
T Consensus 337 g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 337 GNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred CCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 4689999999853 33 568899999865 4577653
No 107
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=81.01 E-value=2.3 Score=41.50 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
+|..-+.+|.+ ++|+.|+-+ +++++ +.-|+|||..-|-| +++-.++.+.+++..-
T Consensus 124 ~~~~~~~lLek-------Agi~~P~~~---~~Pee---------Idr~VIVK~pgAkg---gRGyFiA~s~eef~ek~e~ 181 (361)
T COG1759 124 DRKLEYKLLEK-------AGLRIPKKY---KSPEE---------IDRPVIVKLPGAKG---GRGYFIASSPEEFYEKAER 181 (361)
T ss_pred chhhHHHHHHH-------cCCCCCccc---CChHH---------cCCceEEecCCccC---CceEEEEcCHHHHHHHHHH
Confidence 33344556664 689999855 23332 34499999875554 8999999999887542
Q ss_pred --C---------CCeEEEeccc
Q 019076 197 --E---------PPMLLQEFVN 207 (346)
Q Consensus 197 --~---------~p~v~QEfI~ 207 (346)
+ ....+||||-
T Consensus 182 l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 182 LLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HHHcCCcchhhhhhceeeEEee
Confidence 1 2477888884
No 108
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=77.67 E-value=6.8 Score=39.13 Aligned_cols=75 Identities=23% Similarity=0.169 Sum_probs=50.4
Q ss_pred CccccCcEEEEccCCCChhhHHHhhCCC-CcEEEecCcC-CCCCCceeeEEEeChhhhhcc-----C------------C
Q 019076 138 GKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-----E------------P 198 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~-fPvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l-----~------------~ 198 (346)
.|||+|+..++.+ .++..+ ....++ .|+|+|+.+- +|--++-++-++.+.++..+. . .
T Consensus 15 ~GiPvp~g~v~~s-~eea~~--~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~ 91 (387)
T COG0045 15 YGIPVPPGYVATS-PEEAEE--AAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVN 91 (387)
T ss_pred cCCCCCCceeeeC-HHHHHH--HHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceee
Confidence 6999999998863 333322 223455 7999999543 455566789999998876542 1 1
Q ss_pred CeEEEecccCCCeEEEE
Q 019076 199 PMLLQEFVNHGGILFKI 215 (346)
Q Consensus 199 p~v~QEfI~h~G~~~KV 215 (346)
-++++|+++|.-..|=+
T Consensus 92 ~vlvee~~~~~~~E~Yl 108 (387)
T COG0045 92 KVLVEEAVDIIKKEYYL 108 (387)
T ss_pred EEEEEecCCCccceEEE
Confidence 38999999976544433
No 109
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.59 E-value=2 Score=43.69 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=46.1
Q ss_pred cccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhccCCCeEEEecccCC-------CeE
Q 019076 140 VRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHG-------GIL 212 (346)
Q Consensus 140 I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~-------G~~ 212 (346)
-.-|+++.+..+-.++.+... ...-|+||||.. ++.+.+++++.+...-..+.. .++||||-.+ -.|
T Consensus 203 ~fyp~sw~lPa~l~df~a~~~--~~KrtfivkpDs---gaqg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd 276 (565)
T KOG2158|consen 203 MFYPTSWRLPAPLCDFPASTE--IMKRTFIVKPDS---GAQGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFD 276 (565)
T ss_pred cCCCccccCchHHHHHHHHHH--HhcccEEECCCC---CCCCcceeeechhhhhhHHHH-HHHHHHhcccccccccceee
Confidence 356777766433333333222 234499999875 346778999966655444332 6788888543 347
Q ss_pred EEEEEECCE
Q 019076 213 FKIYIIGET 221 (346)
Q Consensus 213 ~KV~VvG~~ 221 (346)
+|||++=..
T Consensus 277 ~rvy~likS 285 (565)
T KOG2158|consen 277 QRVYSLIKS 285 (565)
T ss_pred eeeeeeeec
Confidence 788877443
No 110
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=68.24 E-value=47 Score=35.52 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=67.9
Q ss_pred CCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 104 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 104 p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
+.+.+|+|+-++. +.|| .+|-+|.++.. .+.--.|.++ ..+ .. + .+-..|.||+. |- ++.+
T Consensus 482 ~~~~~iEP~Wk~l-lsNK-aiLplLW~l~p---~Hp~LLpayf----e~d--~~-l----~~~~yV~KPi~--GR-EG~n 542 (619)
T PRK10507 482 PEVLVFEPLWTVI-PGNK-AILPVLWSLFP---HHRYLLDTDF----TVN--DE-L----VKTGYAVKPIA--GR-CGSN 542 (619)
T ss_pred CceEEEcccHHhh-cccH-HHHHHHHHhCC---CCcccccccc----cCC--cc-c----ccCCeEeccCC--Cc-CCCC
Confidence 6799999987765 4888 77888887632 2322233222 111 11 1 11249999998 54 6778
Q ss_pred eEEEeCh-hhhhcc-----CCCeEEEecccCC---Ce--EEEEEEECCEEEE-EEeec
Q 019076 184 LFLAYDR-FSLSEL-----EPPMLLQEFVNHG---GI--LFKIYIIGETIKV-VRRFS 229 (346)
Q Consensus 184 m~lv~~~-~~L~~l-----~~p~v~QEfI~h~---G~--~~KV~VvG~~v~~-~~R~S 229 (346)
|.|+.+. ..+.+. +.+.|.|+|++=+ |. .+=+++|||+... ..|.+
T Consensus 543 V~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 543 IDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred EEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 9999763 222221 4679999999853 22 5678999998754 56755
No 111
>PLN02235 ATP citrate (pro-S)-lyase
Probab=66.11 E-value=20 Score=36.44 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=45.4
Q ss_pred CccccCcEEEEccCCCChhhHHHh-hCCCC-cEEEecCcC-CCCCCceeeEEEeChhhhhcc-----CC-----------
Q 019076 138 GKVRVPRQMVITKDSLSIPDQVFE-AGLKL-PLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-----EP----------- 198 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~~l~~-~~l~f-PvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l-----~~----------- 198 (346)
.+||+|+..++-.+.++..+.... ..|+. ++|+|+.+- +|--.+-++-++.+.++..+. ..
T Consensus 23 ~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v 102 (423)
T PLN02235 23 AGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPI 102 (423)
T ss_pred CCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCccE
Confidence 499999999872233333222111 12665 469999654 344566789999998886553 11
Q ss_pred -CeEEEecccCC
Q 019076 199 -PMLLQEFVNHG 209 (346)
Q Consensus 199 -p~v~QEfI~h~ 209 (346)
-++++|+++|.
T Consensus 103 ~~vLVEe~v~i~ 114 (423)
T PLN02235 103 TTFIVEPFVPHD 114 (423)
T ss_pred eEEEEEecCCCc
Confidence 25788888875
No 112
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=65.45 E-value=16 Score=31.32 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=45.2
Q ss_pred CCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCC------------ccEEEEcccchhhH
Q 019076 26 PERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWC 93 (346)
Q Consensus 26 ~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~------------fDvilhK~t~~~~~ 93 (346)
-...+|+..+.+.--+- .-+|+..+. +.|..++.++.+..-...|+ +|+|+.|......
T Consensus 37 l~gk~v~~lF~e~StRT--R~SFe~A~~------~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~- 107 (142)
T PF02729_consen 37 LKGKTVALLFFEPSTRT--RLSFEAAAN------RLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGA- 107 (142)
T ss_dssp TTTCEEEEEESS--HHH--HHHHHHHHH------HTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHH-
T ss_pred CCCCEEEEEecCCCchh--hhhHHHhhh------cceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchH-
Confidence 34566666655533221 124455555 99999999997542222222 8999999876433
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
++++. ++..++|||-.
T Consensus 108 --~~~~a-~~~~vPVINa~ 123 (142)
T PF02729_consen 108 --LEELA-EHSSVPVINAG 123 (142)
T ss_dssp --HHHHH-HHCSSEEEEEE
T ss_pred --HHHHH-HhccCCeEcCc
Confidence 44443 45689999854
No 113
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=57.76 E-value=10 Score=38.64 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=36.6
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCC---CCcEEEecCcC-CCCCCc-------eeeEEEeChh
Q 019076 123 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL---KLPLVAKPLVV-DGSAKS-------HELFLAYDRF 191 (346)
Q Consensus 123 ~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l---~fPvVvKP~~a-~GS~~s-------h~m~lv~~~~ 191 (346)
...++|++ .|||+|+..++.+ .++..+ ....+ ++|+|+|..+- +|--.+ -++.+..+ +
T Consensus 34 qaK~LL~~-------~GIpvp~~~va~t-~eea~~--aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-e 102 (422)
T PLN00124 34 QGAELMSK-------YGVNVPKGAAASS-LDEVKK--ALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-D 102 (422)
T ss_pred HHHHHHHH-------cCCCCCCceeeCC-HHHHHH--HHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-H
Confidence 44466664 6999999998853 332222 12345 68999999853 332222 35666655 5
Q ss_pred hhhc
Q 019076 192 SLSE 195 (346)
Q Consensus 192 ~L~~ 195 (346)
++.+
T Consensus 103 ea~~ 106 (422)
T PLN00124 103 KAEE 106 (422)
T ss_pred HHHH
Confidence 5443
No 114
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=55.66 E-value=6.9 Score=38.78 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=62.4
Q ss_pred hCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 102 KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 102 ~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
+.+++.+|+|+=.+ .+.|| .++-+|.+.- .+|.--.|... .+..... .+---|.||+. |- ++
T Consensus 248 ~~~~~~~lEPaWk~-ilsNK-~lLplLW~~f---PnHp~LL~t~F----~~~~~~~------~~~~yv~KPl~--gR-EG 309 (387)
T COG0754 248 ENARTIFLEPAWKS-ILSNK-ALLPLLWERF---PNHPNLLPTYF----EPDDEEK------LGESYVRKPLF--GR-EG 309 (387)
T ss_pred cCCCcEEechhHHH-Hhccc-cHHHHHHHhC---CCCcccccccC----CCCcccc------chhhhhccccc--cc-cC
Confidence 45889999996554 45788 5677777631 12333333322 1111111 11126999998 44 56
Q ss_pred eeeEEEeC-hhhhhcc-----CCCeEEEecccCCCeEEEEEEECCEEE
Q 019076 182 HELFLAYD-RFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGETIK 223 (346)
Q Consensus 182 h~m~lv~~-~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~~v~ 223 (346)
-++.|+.+ .+.+.+. +.++|+|||.+-+-.--+.|+||.-++
T Consensus 310 aNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgSw~v 357 (387)
T COG0754 310 ANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLPKFGDSYYQVGSWVV 357 (387)
T ss_pred CCeeEEecCCceeecCCCCccccchhhhhhccCcccCCeeEEEEEEEE
Confidence 68999987 4445544 357899999987755445666665443
No 115
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=53.02 E-value=3.9 Score=45.18 Aligned_cols=179 Identities=15% Similarity=0.221 Sum_probs=93.8
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHH-HhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQV-FEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l-~~~~l~fPvVvKP~~a~GS~~s 181 (346)
+++.|+ -|.+.|...-||-...+.|.++ +.++-++...+ .+.+.+ +...++||+|+....+-|.
T Consensus 481 ~~vkvLgt~i~ti~ttedr~lfa~am~ei-------~e~ia~s~a~~----sie~al~aae~l~ypvivRaayalgg--- 546 (1435)
T KOG0370|consen 481 YGVKVLGTPIQTIITTEDRDLFARALNEI-------NEKIAPSEAVS----TIEEALEAAERLGYPVIVRAAYALGG--- 546 (1435)
T ss_pred cchhhhCCCcccceeeccHHHHHHHHHhh-------cccccchhhHh----HHHHHHHHHHhcCcHHHHHHHHHhcC---
Confidence 344443 3567788888998888888864 23333333222 122222 3567999999997655443
Q ss_pred eeeEEEeChhhhhccC-------CCeEEEecccCCCe-EEEEEEECCEE-EEEEeecCCCcccchhhcccceeecccccc
Q 019076 182 HELFLAYDRFSLSELE-------PPMLLQEFVNHGGI-LFKIYIIGETI-KVVRRFSLPNVSKRELAKVVSVFRFPRVSS 252 (346)
Q Consensus 182 h~m~lv~~~~~L~~l~-------~p~v~QEfI~h~G~-~~KV~VvG~~v-~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~ 252 (346)
-+-....|+++|.++. +.++++.=+. |+ .+-+=||.|.. .|+.--.+.|+++-...+.+...
T Consensus 547 lgSgfa~n~eeL~~l~~~a~a~s~QilvekSlk--GwkevEyevvrDa~~nciTvcnmen~DplgihtGdSiV------- 617 (1435)
T KOG0370|consen 547 LGSGFANNEEELQDLAAQALALSPQILVEKSLK--GWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSIV------- 617 (1435)
T ss_pred ccccccccHHHHHHHHhhccccCceeeehhhhc--cccceEEEEEeccccchhhhcCCcccCcceeeccceEE-------
Confidence 2334578999998762 3355555442 43 44455666653 13222234444432222111100
Q ss_pred cccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCC
Q 019076 253 AAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 253 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fP 314 (346)
.+....++.+ .-..++..|.++-+.||.- =+++-...+..+ -.|+|||||+-=
T Consensus 618 ---vapsqtlsd~-----ey~mlrttaikVirhlgvvGEcniQyaL~p~s-~~y~IiEVNarL 671 (1435)
T KOG0370|consen 618 ---VAPSQTLSDE-----EYQMLRTTAIKVIRHLGVVGECNIQYALNPYS-LEYRIIEVNARL 671 (1435)
T ss_pred ---EeeccccChH-----HHHHHHhcchhheeccCCcccccceeeecccc-eeEEEEEEEeEE
Confidence 0000011100 0134677788888888753 223555555433 379999999643
No 116
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=45.15 E-value=43 Score=27.94 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=21.7
Q ss_pred CCccEEEEcccch---hh--HHHHHHHHHhCCCeeeeChHHHHH
Q 019076 78 GPFDVVLHKLSGM---EW--CKIIEDYRQKHPEVTILDPPDAIK 116 (346)
Q Consensus 78 ~~fDvilhK~t~~---~~--~~~l~~y~~~~p~v~VIDp~~ai~ 116 (346)
..||+|+.|---. .| .-++-+.+ ++.|+.|||.|++++
T Consensus 77 ~~~DvvlmRkDPPfD~~yi~aT~lLe~a-~~~gv~VvN~P~~lR 119 (119)
T PF02951_consen 77 DDFDVVLMRKDPPFDMEYIYATYLLELA-ERQGVLVVNDPQSLR 119 (119)
T ss_dssp GGSSEEEEE--S---HHHHHHHHHHHHH-HHTT-EEES-HHHHH
T ss_pred ccCCEEEEecCCCCChHHHHHHHHHHHh-hhCCcEEEeChhhcC
Confidence 4589999886332 22 22333444 347999999999985
No 117
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=40.46 E-value=28 Score=34.22 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=18.7
Q ss_pred CCcEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 287 GLRLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 287 Gl~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
-+.++|+|++++. +| +++|||.|.--+
T Consensus 67 ~~~~~g~Dl~r~~-dG-~w~VleDn~~~P 93 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DG-RWRVLEDNTRAP 93 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-SS-
T ss_pred EEEEEEEeeeECC-CC-CEEEEEecCCCC
Confidence 4889999999986 45 799999997644
No 118
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=38.42 E-value=21 Score=28.23 Aligned_cols=19 Identities=26% Similarity=0.765 Sum_probs=16.1
Q ss_pred EecccCC--CeEEEEEEECCE
Q 019076 203 QEFVNHG--GILFKIYIIGET 221 (346)
Q Consensus 203 QEfI~h~--G~~~KV~VvG~~ 221 (346)
+.|+||+ |-+|+|..+|+.
T Consensus 3 E~YLNHPtFGlLy~Vc~~~e~ 23 (88)
T PF12058_consen 3 ETYLNHPTFGLLYRVCPVDEG 23 (88)
T ss_dssp --EEEETTTEEEEEEEEECTT
T ss_pred cccccCCccchheeeeeCCCc
Confidence 5799999 999999999987
No 119
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=37.97 E-value=53 Score=29.57 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=36.0
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEE---cccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHH
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLH---KLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQS 123 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilh---K~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~ 123 (346)
.+++..+ +.|+.+..|+++.+|+ .|.+|+- .+.+....+.|.+|.+ +-|.+|+.+...+..-.++..
T Consensus 34 ~~y~al~------~~gi~vDvv~~~~dL~---~Ykllv~P~~~~l~~~~~~~L~~yV~-~GG~li~~~~tg~~d~~~~~~ 103 (207)
T PF08532_consen 34 GWYRALR------ELGIPVDVVSPDDDLS---GYKLLVLPSLYILSPEFAERLRAYVE-NGGTLILTPRTGVKDENGRVR 103 (207)
T ss_dssp HHHHHHH------TTT--EEEE-TTS--T---T-SEEEES--SC--HHH---HHHHHT--SS-EEE-TTTT-B-TTS---
T ss_pred HHHHHHH------HcCCceEEecCcCCcc---cCcEEEEeeEEEEChHHHHHHHHHHH-CCCEEEEEcccCCcCCCCcCc
Confidence 3455566 8999999999988666 4887773 2334456688999985 478999998888777777753
No 120
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.60 E-value=2.5e+02 Score=27.02 Aligned_cols=85 Identities=16% Similarity=0.291 Sum_probs=49.7
Q ss_pred eEEEecc-cCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHH
Q 019076 200 MLLQEFV-NHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERL 278 (346)
Q Consensus 200 ~v~QEfI-~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~l 278 (346)
+++-++- -|.+..|||||=.++.+....+-..|.. +. ++. ..+.++.+
T Consensus 165 LvLrkWc~l~p~~EFRcFVKsn~lvg~~QRd~tnyY--d~-----------l~e------------------~kd~~k~l 213 (334)
T KOG2983|consen 165 LVLRKWCPLKPEMEFRCFVKSNELVGICQRDVTNYY--DV-----------LLE------------------EKDLLKGL 213 (334)
T ss_pred hhHhhhcCCCcCceEEEEEeccceeeeeeccchhHH--HH-----------HHH------------------HHHHHHHH
Confidence 3444433 3468999999999998765544433321 00 000 01222333
Q ss_pred HHH-----HHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 279 ARE-----LRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 279 A~~-----l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
... +.-.+--.=|-|||-++.. ++.++||+|-|=|-+
T Consensus 214 I~eff~d~i~~kF~dedfvfDVYi~k~--~kv~lID~Npf~~~T 255 (334)
T KOG2983|consen 214 IEEFFKDKILFKFPDEDFVFDVYITKE--RKVWLIDFNPFCGST 255 (334)
T ss_pred HHHHHHhhhhccCCCCCeeEEEEecCC--CcEEEEeccCccCcc
Confidence 322 3334555667899998753 489999999997744
No 121
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=33.52 E-value=1.3e+02 Score=30.35 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=37.4
Q ss_pred EEEecCcCCCCCCceeeEEEeChhhhhccC----------------CCeEEEecccCCCe------EEEEEEECCEEEE
Q 019076 168 LVAKPLVVDGSAKSHELFLAYDRFSLSELE----------------PPMLLQEFVNHGGI------LFKIYIIGETIKV 224 (346)
Q Consensus 168 vVvKP~~a~GS~~sh~m~lv~~~~~L~~l~----------------~p~v~QEfI~h~G~------~~KV~VvG~~v~~ 224 (346)
+|+|... |+ .+-++..|.+.+++..++ ..+++||=|.+--+ .==||+||.+|++
T Consensus 260 ViVKADa--GT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vvg 335 (403)
T TIGR02049 260 VIVKADA--GT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVTG 335 (403)
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEeE
Confidence 5678443 65 677778888888887652 24899998876532 1147888888876
No 122
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=31.91 E-value=71 Score=31.43 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCC------------CCccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q------------~~fDvilhK~t~~~~~ 93 (346)
...+|+..+.+.- +-+ -+|+..+. +.|..++.+|++..-... .=+|+|+.|.....
T Consensus 45 ~gk~v~~lF~epSTRTR---~SFe~A~~------~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y~D~iviR~~~~~-- 113 (331)
T PRK02102 45 EGKNIALIFEKTSTRTR---CAFEVAAI------DLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQE-- 113 (331)
T ss_pred CCCEEEEEeCCCChhHH---HHHHHHHH------HcCCCEEEcCcccccCCCCcCHHHHHHHHhhcCCEEEEECCchH--
Confidence 3555665544332 322 35566666 999999998875421111 12899999987633
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
.++++. ++-+++|||=.
T Consensus 114 -~~~~~a-~~~~vPVINa~ 130 (331)
T PRK02102 114 -IVEELA-KYSGVPVWNGL 130 (331)
T ss_pred -HHHHHH-HhCCCCEEECC
Confidence 344443 34679999943
No 123
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=30.37 E-value=86 Score=30.89 Aligned_cols=74 Identities=11% Similarity=0.217 Sum_probs=46.4
Q ss_pred CcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCC-CCCC-----------CCccEEEEcccchhhHH
Q 019076 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRP-LSDQ-----------GPFDVVLHKLSGMEWCK 94 (346)
Q Consensus 27 ~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~-l~~q-----------~~fDvilhK~t~~~~~~ 94 (346)
...+|+..+.+.-.+- .-+|+..+. +.|..++.+|++.. +... .=+|+|+.|.....
T Consensus 44 ~gk~l~~lF~epSTRT--R~SFE~A~~------~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~~--- 112 (334)
T PRK12562 44 TGKNIALIFEKDSTRT--RCSFEVAAY------DQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQE--- 112 (334)
T ss_pred CCCEEEEEECCCCchh--HHHHHHHHH------HcCCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCchH---
Confidence 4566776655433222 135676667 99999999987542 2211 12899999987633
Q ss_pred HHHHHHHhCCCeeeeChH
Q 019076 95 IIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 95 ~l~~y~~~~p~v~VIDp~ 112 (346)
.++++. ++-+++|||-.
T Consensus 113 ~~~~~a-~~~~vPVINa~ 129 (334)
T PRK12562 113 VVETLA-EYAGVPVWNGL 129 (334)
T ss_pred HHHHHH-HhCCCCEEECC
Confidence 344443 45679999953
No 124
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=29.60 E-value=1.6e+02 Score=29.77 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=34.8
Q ss_pred EEEecCcCCCCCCceeeEEEeChhhhhccC----------------CCeEEEecccCCCe------EEEEEEECCEEEE-
Q 019076 168 LVAKPLVVDGSAKSHELFLAYDRFSLSELE----------------PPMLLQEFVNHGGI------LFKIYIIGETIKV- 224 (346)
Q Consensus 168 vVvKP~~a~GS~~sh~m~lv~~~~~L~~l~----------------~p~v~QEfI~h~G~------~~KV~VvG~~v~~- 224 (346)
+|+|... |+ .+-|+..|.+.+++..++ ..+++||=|.+--+ .==||+||.+|++
T Consensus 263 V~VKAD~--GT-YGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvgg 339 (404)
T PF08886_consen 263 VFVKADA--GT-YGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDRYVVGG 339 (404)
T ss_dssp EEEEEE---GG-G-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 6789544 66 777788889999987662 24899998876421 3358999999876
Q ss_pred EEe
Q 019076 225 VRR 227 (346)
Q Consensus 225 ~~R 227 (346)
..|
T Consensus 340 fyR 342 (404)
T PF08886_consen 340 FYR 342 (404)
T ss_dssp EEE
T ss_pred EEE
Confidence 344
No 125
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=29.27 E-value=92 Score=30.71 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=44.4
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCC------------CccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~------------~fDvilhK~t~~~~~ 93 (346)
...+|+..+.+.- +-. -+|+..+. +.|-.++.+|.+..-...| =+|+|+.|.....
T Consensus 44 ~gk~l~~lF~epSTRTR---~SFe~A~~------~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~-- 112 (336)
T PRK03515 44 TGKNIALIFEKDSTRTR---CSFEVAAY------DQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQE-- 112 (336)
T ss_pred CCCEEEEEecCCChhHH---HHHHHHHH------HcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChH--
Confidence 4556665544332 322 35566666 9999999998754211111 1899999987643
Q ss_pred HHHHHHHHhCCCeeeeCh
Q 019076 94 KIIEDYRQKHPEVTILDP 111 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp 111 (346)
.++++. ++-+++|||=
T Consensus 113 -~~~~~a-~~~~vPVINa 128 (336)
T PRK03515 113 -IVETLA-EYAGVPVWNG 128 (336)
T ss_pred -HHHHHH-HhCCCCEEEC
Confidence 345553 4567999994
No 126
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=27.38 E-value=87 Score=30.24 Aligned_cols=36 Identities=22% Similarity=0.570 Sum_probs=26.5
Q ss_pred HHHHHHhCCcE------eEEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 280 RELRHRLGLRL------FNIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 280 ~~l~~~lGl~l------fGvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
..+.+..|.++ =-||+++.. ++..|+||+|++-|=.
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~gG 220 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGSGG 220 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecCCC
Confidence 44455577776 559999954 4589999999998843
No 127
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=27.28 E-value=90 Score=30.21 Aligned_cols=74 Identities=9% Similarity=0.161 Sum_probs=45.5
Q ss_pred CcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCC------------CccEEEEcccchhhHH
Q 019076 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCK 94 (346)
Q Consensus 27 ~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~------------~fDvilhK~t~~~~~~ 94 (346)
...+|+..+.+.-.+. .-+|+..++ +.|-.++.++.+..-...| =+|+|..|.....
T Consensus 42 ~gk~v~~lF~e~STRT--R~SFe~A~~------~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~--- 110 (304)
T PRK00779 42 KGKTLAMIFEKPSTRT--RVSFEVGMA------QLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHE--- 110 (304)
T ss_pred CCCEEEEEecCCCchH--HHHHHHHHH------HcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChh---
Confidence 4556665554433221 135677677 9999999998754211111 1899999987633
Q ss_pred HHHHHHHhCCCeeeeChH
Q 019076 95 IIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 95 ~l~~y~~~~p~v~VIDp~ 112 (346)
.+.++. ++-+++|||=-
T Consensus 111 ~~~~~a-~~~~vPVINag 127 (304)
T PRK00779 111 TLEELA-EYSTVPVINGL 127 (304)
T ss_pred HHHHHH-HhCCCCEEeCC
Confidence 344443 45679999954
No 128
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=24.92 E-value=1e+02 Score=29.77 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=46.1
Q ss_pred CcEEEEEEec-ccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCC------------CccEEEEcccchhhH
Q 019076 27 ERLVVGYALT-SKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~-~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~------------~fDvilhK~t~~~~~ 93 (346)
...+|+-.+. ++-+-. -+|+..+. +.|-..+.++.+..-...| =+|+|+.|.....
T Consensus 37 ~gk~~~~lF~epSTRTR---~SFE~A~~------~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~-- 105 (302)
T PRK14805 37 AGKSVVMLFEKPSLRTR---VSFDIGIN------KLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHS-- 105 (302)
T ss_pred CCCEEEEEecCCCchHH---HHHHHHHH------HcCCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCChh--
Confidence 4556665444 333332 36677777 9999999998753211111 2899999987633
Q ss_pred HHHHHHHHhCCCeeeeChHH
Q 019076 94 KIIEDYRQKHPEVTILDPPD 113 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~~ 113 (346)
.++++. ++-+++|||-..
T Consensus 106 -~~~~~a-~~~~vPVINa~~ 123 (302)
T PRK14805 106 -TIEQLA-EHGSVPVINALC 123 (302)
T ss_pred -HHHHHH-HhCCCCEEECCC
Confidence 344543 456799999654
No 129
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=24.90 E-value=1e+02 Score=29.74 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=44.8
Q ss_pred CcEEEEEEecc-cccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCC------------CccEEEEcccchhhH
Q 019076 27 ERLVVGYALTS-KKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~-kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~------------~fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+ +-+-+ -+|+..+. +.|-.++.+|.+..=...| =+|+|+.|..+...
T Consensus 38 ~gk~v~~lF~epSTRTR---~SFe~A~~------~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~- 107 (304)
T TIGR00658 38 KGKTLALIFEKPSTRTR---VSFEVAAY------QLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHED- 107 (304)
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHH------HcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHH-
Confidence 45566654443 33332 36677777 9999999998754211112 28999999876433
Q ss_pred HHHHHHHHhCCCeeeeCh
Q 019076 94 KIIEDYRQKHPEVTILDP 111 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp 111 (346)
++++. ++-+++|||=
T Consensus 108 --~~~~a-~~~~vPVINa 122 (304)
T TIGR00658 108 --VEELA-KYASVPVING 122 (304)
T ss_pred --HHHHH-HhCCCCEEEC
Confidence 44443 4567999994
No 130
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=24.60 E-value=1.3e+02 Score=29.61 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=44.8
Q ss_pred CcEEEEEEecc-cccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCC------------CccEEEEcccchhhH
Q 019076 27 ERLVVGYALTS-KKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~-kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~------------~fDvilhK~t~~~~~ 93 (346)
...+|+..+.+ +-+-+ -+|+..+. +.|-.++.+|.+..-...| =+|+|+.|.....
T Consensus 44 ~gk~l~~lF~epSTRTR---~SFe~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~-- 112 (332)
T PRK04284 44 KGKNIALIFEKDSTRTR---CAFEVAAY------DQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQR-- 112 (332)
T ss_pred CCCEEEEEecCCChhHH---HHHHHHHH------HcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchH--
Confidence 45566655544 33322 35666677 9999999998864211111 2899999987633
Q ss_pred HHHHHHHHhCCCeeeeCh
Q 019076 94 KIIEDYRQKHPEVTILDP 111 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp 111 (346)
.++++. ++-+++|||=
T Consensus 113 -~~~~~a-~~s~vPVINa 128 (332)
T PRK04284 113 -TVETLA-EYSGVPVWNG 128 (332)
T ss_pred -HHHHHH-HhCCCCEEEC
Confidence 344443 3457999994
No 131
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=24.20 E-value=96 Score=30.01 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=45.2
Q ss_pred cEEEEEEe-cccccccccchHHHHHHhhhcccccCCcEEEEecC-CCCCCCCC------------CccEEEEcccchhhH
Q 019076 28 RLVVGYAL-TSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQ-NRPLSDQG------------PFDVVLHKLSGMEWC 93 (346)
Q Consensus 28 ~~~vGy~l-~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~-~~~l~~q~------------~fDvilhK~t~~~~~ 93 (346)
..+|+..+ .++-+-+ -+|+..+. +.|-..+.++. +..-...| =+|+|+.|.....
T Consensus 39 gk~v~~lF~~pSTRTR---~SFe~A~~------~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~-- 107 (301)
T TIGR00670 39 GKILANLFFEPSTRTR---LSFETAMK------RLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEG-- 107 (301)
T ss_pred CCEEEEEeccCCchhH---hHHHHHHH------HcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchh--
Confidence 44555444 3443433 36677777 99999999988 43211111 1899999987633
Q ss_pred HHHHHHHHhCCCeeeeChHH
Q 019076 94 KIIEDYRQKHPEVTILDPPD 113 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~~ 113 (346)
.+.++. ++-+++|||-..
T Consensus 108 -~~~~~a-~~s~vPVINa~~ 125 (301)
T TIGR00670 108 -AARLAA-EVSEVPVINAGD 125 (301)
T ss_pred -HHHHHH-hhCCCCEEeCCC
Confidence 344443 446799999865
No 132
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=23.54 E-value=1.6e+02 Score=24.78 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=39.4
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEccc---chhhHHHHHHHHHhCCCeeeeChHHHH
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS---GMEWCKIIEDYRQKHPEVTILDPPDAI 115 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t---~~~~~~~l~~y~~~~p~v~VIDp~~ai 115 (346)
.+++..+ +.|+.+..|+++..+. .|++|+.=.. +....+.|.+|.++ .|+++.-+-...
T Consensus 30 ~~~~~l~------~~gi~~d~v~~~~~l~---~y~~vi~P~~~~~~~~~~~~l~~~v~~-GG~li~~~~s~~ 91 (154)
T cd03143 30 ALYRALR------ELGIPVDVVPPDADLS---GYKLVVLPDLYLLSDATAAALRAYVEN-GGTLVAGPRSGA 91 (154)
T ss_pred HHHHHHH------HCCCCEEEECCCCCcc---cCCEEEECchhcCCHHHHHHHHHHHHC-CCEEEEecCcCc
Confidence 3455555 8899999998776554 7888875332 23456788899864 677777654333
No 133
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=21.89 E-value=1.5e+02 Score=29.20 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=45.3
Q ss_pred CcEEEEEEeccc-ccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCC------------CccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSK-KKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~k-K~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~------------~fDvilhK~t~~~~~ 93 (346)
...+|+..+.+. -+-+ -+|+..++ +.|-.++.++.+..-...| =+|+|+.|......
T Consensus 45 ~gk~v~~lF~epSTRTR---~SFe~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~- 114 (334)
T PRK01713 45 KGKNIALIFEKTSTRTR---CAFEVAAY------DQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSI- 114 (334)
T ss_pred CCCEEEEEeCCCCchHH---HHHHHHHH------HcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchHH-
Confidence 456666655443 3322 35666677 9999999998754211111 28999999876333
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
++++. ++-+++|||-.
T Consensus 115 --~~~~a-~~~~vPVINa~ 130 (334)
T PRK01713 115 --VNELA-EYAGVPVFNGL 130 (334)
T ss_pred --HHHHH-HhCCCCEEECC
Confidence 44443 34679999953
No 134
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=20.10 E-value=1.6e+02 Score=28.58 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=46.0
Q ss_pred CcEEEEEEec-ccccccccchHHHHHHhhhcccccCCcEEEEecCCCC-CC------C-----CCC-ccEEEEcccchhh
Q 019076 27 ERLVVGYALT-SKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRP-LS------D-----QGP-FDVVLHKLSGMEW 92 (346)
Q Consensus 27 ~~~~vGy~l~-~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~-l~------~-----q~~-fDvilhK~t~~~~ 92 (346)
...+++-.+. ++-+-+ -+|+..++ +.|-..+.++.+.. +. + -.= +|+|..|......
T Consensus 44 ~gk~~~~lF~~pSTRTR---~SFe~A~~------~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~ 114 (305)
T PRK00856 44 RGKTVANLFFEPSTRTR---LSFELAAK------RLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGA 114 (305)
T ss_pred CCcEEEEEeccCCcchH---HHHHHHHH------HcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHH
Confidence 4555664443 333332 36677777 99999999987541 11 1 122 8999999876444
Q ss_pred HHHHHHHHHhCCCeeeeChHH
Q 019076 93 CKIIEDYRQKHPEVTILDPPD 113 (346)
Q Consensus 93 ~~~l~~y~~~~p~v~VIDp~~ 113 (346)
++++. ++..++|||-..
T Consensus 115 ---~~~~a-~~~~vPVINa~~ 131 (305)
T PRK00856 115 ---ARLLA-ESSDVPVINAGD 131 (305)
T ss_pred ---HHHHH-HHCCCCEEECCC
Confidence 44443 346799999764
Done!