Query 019076
Match_columns 346
No_of_seqs 204 out of 489
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 4E-60 1.4E-64 461.5 32.4 304 27-340 17-337 (346)
2 1z2n_X Inositol 1,3,4-trisphos 100.0 4.4E-36 1.5E-40 286.4 25.7 292 24-337 7-321 (324)
3 3t7a_A Inositol pyrophosphate 100.0 3E-34 1E-38 271.0 21.0 276 23-338 2-314 (330)
4 1i7n_A Synapsin II; synapse, p 100.0 1.6E-30 5.4E-35 249.1 23.1 243 56-339 33-308 (309)
5 2p0a_A Synapsin-3, synapsin II 100.0 9.1E-30 3.1E-34 246.8 21.1 241 57-338 50-324 (344)
6 1pk8_A RAT synapsin I; ATP bin 100.0 3.7E-29 1.3E-33 247.1 20.1 244 55-339 144-420 (422)
7 3r5x_A D-alanine--D-alanine li 99.9 8.7E-23 3E-27 192.9 19.2 235 52-320 25-274 (307)
8 4eg0_A D-alanine--D-alanine li 99.9 2E-22 7E-27 192.1 20.8 237 56-322 39-292 (317)
9 1uc8_A LYSX, lysine biosynthes 99.9 1E-22 3.5E-27 188.6 17.5 227 47-320 15-260 (280)
10 3se7_A VANA; alpha-beta struct 99.9 3.8E-22 1.3E-26 192.9 19.5 207 79-320 90-316 (346)
11 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 3.5E-21 1.2E-25 180.9 20.4 230 58-319 30-280 (306)
12 2i87_A D-alanine-D-alanine lig 99.8 1.7E-20 5.9E-25 182.3 17.4 209 78-319 86-316 (364)
13 1ehi_A LMDDL2, D-alanine:D-lac 99.8 5.3E-20 1.8E-24 180.2 20.7 215 78-319 92-326 (377)
14 4fu0_A D-alanine--D-alanine li 99.8 3.3E-20 1.1E-24 180.2 18.7 214 79-320 97-323 (357)
15 3k3p_A D-alanine--D-alanine li 99.8 6.5E-20 2.2E-24 180.4 20.1 259 28-319 37-346 (383)
16 3tqt_A D-alanine--D-alanine li 99.8 1.5E-19 5.2E-24 177.1 21.9 215 79-321 98-328 (372)
17 3ln6_A Glutathione biosynthesi 99.8 2.5E-20 8.4E-25 197.3 16.2 234 57-330 436-746 (750)
18 2fb9_A D-alanine:D-alanine lig 99.8 2.4E-19 8.2E-24 171.7 21.0 207 77-320 74-296 (322)
19 3i12_A D-alanine-D-alanine lig 99.8 5.8E-19 2E-23 172.0 23.8 210 79-320 98-326 (364)
20 1e4e_A Vancomycin/teicoplanin 99.8 2E-19 6.9E-24 173.3 20.1 206 79-319 90-315 (343)
21 3e5n_A D-alanine-D-alanine lig 99.8 1.7E-19 5.8E-24 177.4 19.7 210 79-320 117-345 (386)
22 2pvp_A D-alanine-D-alanine lig 99.8 8.6E-19 3E-23 171.3 18.9 222 79-336 107-346 (367)
23 3lwb_A D-alanine--D-alanine li 99.8 5.7E-19 1.9E-23 172.9 15.3 215 79-320 109-341 (373)
24 3ln7_A Glutathione biosynthesi 99.8 5.5E-19 1.9E-23 186.9 14.7 247 46-330 436-752 (757)
25 1gsa_A Glutathione synthetase; 99.8 1.1E-17 3.6E-22 157.2 14.9 193 79-319 79-293 (316)
26 3q2o_A Phosphoribosylaminoimid 99.7 2.6E-15 8.9E-20 146.9 23.5 241 27-318 13-283 (389)
27 3ax6_A Phosphoribosylaminoimid 99.7 2.4E-15 8.1E-20 146.4 22.3 218 60-318 22-266 (380)
28 3orq_A N5-carboxyaminoimidazol 99.7 1.6E-14 5.6E-19 141.0 23.1 223 47-318 26-279 (377)
29 3k5i_A Phosphoribosyl-aminoimi 99.6 2E-15 6.8E-20 149.0 16.5 183 105-320 108-298 (403)
30 3vot_A L-amino acid ligase, BL 99.6 1.6E-14 5.6E-19 142.6 22.9 173 110-321 102-298 (425)
31 4dim_A Phosphoribosylglycinami 99.6 4.7E-15 1.6E-19 145.1 18.7 231 47-322 21-288 (403)
32 4ffl_A PYLC; amino acid, biosy 99.6 5.5E-15 1.9E-19 142.9 18.7 206 46-316 14-247 (363)
33 3aw8_A PURK, phosphoribosylami 99.6 8.8E-15 3E-19 141.8 19.9 218 60-318 20-267 (369)
34 3df7_A Putative ATP-grAsp supe 99.6 3.3E-15 1.1E-19 142.2 14.8 181 78-317 68-252 (305)
35 1kjq_A GART 2, phosphoribosylg 99.6 6.6E-15 2.3E-19 143.3 17.1 227 46-319 24-288 (391)
36 2z04_A Phosphoribosylaminoimid 99.6 1.6E-15 5.6E-20 146.5 12.4 218 47-319 15-260 (365)
37 2dwc_A PH0318, 433AA long hypo 99.6 8.9E-15 3E-19 144.8 16.4 228 46-319 32-301 (433)
38 4e4t_A Phosphoribosylaminoimid 99.6 2.3E-14 7.8E-19 142.2 19.2 240 27-318 34-308 (419)
39 3eth_A Phosphoribosylaminoimid 99.6 3.4E-14 1.2E-18 138.3 19.3 223 47-319 15-248 (355)
40 2pn1_A Carbamoylphosphate synt 99.6 2.2E-14 7.7E-19 136.3 13.6 168 104-316 97-275 (331)
41 2r85_A PURP protein PF1517; AT 99.5 1E-13 3.4E-18 131.5 16.3 226 46-316 14-290 (334)
42 3vmm_A Alanine-anticapsin liga 99.5 4E-13 1.4E-17 135.4 18.3 196 79-315 102-332 (474)
43 2ip4_A PURD, phosphoribosylami 99.5 1.4E-13 4.7E-18 135.6 14.0 179 104-317 84-285 (417)
44 3ouz_A Biotin carboxylase; str 99.5 6.6E-13 2.2E-17 132.0 18.5 176 104-317 102-300 (446)
45 2yrx_A Phosphoribosylglycinami 99.5 5E-13 1.7E-17 133.2 17.1 203 78-318 82-313 (451)
46 1a9x_A Carbamoyl phosphate syn 99.5 5.3E-13 1.8E-17 146.5 18.7 219 60-315 39-305 (1073)
47 3lp8_A Phosphoribosylamine-gly 99.5 4.7E-13 1.6E-17 133.6 16.7 223 78-337 82-336 (442)
48 2yw2_A Phosphoribosylamine--gl 99.5 2E-13 7E-18 134.5 13.6 203 79-318 62-292 (424)
49 1vkz_A Phosphoribosylamine--gl 99.5 3.4E-13 1.2E-17 133.0 14.9 181 107-319 93-295 (412)
50 2vpq_A Acetyl-COA carboxylase; 99.5 8.7E-13 3E-17 131.1 17.2 184 96-317 90-296 (451)
51 2xcl_A Phosphoribosylamine--gl 99.5 6.5E-13 2.2E-17 130.8 15.8 204 79-318 62-292 (422)
52 1a9x_A Carbamoyl phosphate syn 99.5 6.8E-13 2.3E-17 145.6 17.3 216 60-315 591-847 (1073)
53 3mjf_A Phosphoribosylamine--gl 99.4 7E-13 2.4E-17 131.9 13.9 190 96-317 83-297 (431)
54 1ulz_A Pyruvate carboxylase N- 99.4 6.8E-13 2.3E-17 131.9 13.7 177 104-317 97-295 (451)
55 2dzd_A Pyruvate carboxylase; b 99.4 1E-12 3.5E-17 131.1 14.4 183 96-317 96-300 (461)
56 3jrx_A Acetyl-COA carboxylase 99.4 1.1E-12 3.8E-17 135.3 13.9 185 97-317 157-384 (587)
57 2qk4_A Trifunctional purine bi 99.4 1.5E-12 5.2E-17 129.6 14.2 182 104-318 111-319 (452)
58 3glk_A Acetyl-COA carboxylase 99.4 1.7E-12 5.9E-17 132.8 14.4 185 97-317 141-368 (540)
59 2w70_A Biotin carboxylase; lig 99.4 3.1E-12 1.1E-16 127.0 15.9 182 97-317 92-296 (449)
60 1w96_A ACC, acetyl-coenzyme A 99.3 6.8E-12 2.3E-16 128.5 14.2 178 106-317 158-375 (554)
61 3hbl_A Pyruvate carboxylase; T 99.3 3E-11 1E-15 133.1 19.5 181 97-317 95-298 (1150)
62 3u9t_A MCC alpha, methylcroton 99.3 4E-12 1.4E-16 133.3 11.9 176 104-316 124-321 (675)
63 3n6r_A Propionyl-COA carboxyla 99.3 4.1E-12 1.4E-16 133.3 10.1 182 97-317 92-296 (681)
64 3va7_A KLLA0E08119P; carboxyla 99.3 3.5E-11 1.2E-15 133.2 17.1 183 96-316 120-324 (1236)
65 2qf7_A Pyruvate carboxylase pr 99.2 3E-11 1E-15 133.3 12.5 183 97-317 111-316 (1165)
66 2pbz_A Hypothetical protein; N 98.9 1.4E-08 4.9E-13 97.3 14.4 170 103-315 81-271 (320)
67 2r7k_A 5-formaminoimidazole-4- 98.8 8.2E-08 2.8E-12 93.4 16.5 177 103-315 107-316 (361)
68 2cqy_A Propionyl-COA carboxyla 98.8 2.9E-11 9.8E-16 96.2 -7.1 91 115-219 3-108 (108)
69 3tig_A TTL protein; ATP-grAsp, 98.4 2.3E-06 8E-11 83.6 12.6 132 78-218 38-209 (380)
70 1wr2_A Hypothetical protein PH 98.2 5.8E-07 2E-11 82.0 4.4 93 118-221 19-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.4 0.00018 6.1E-09 70.7 6.8 89 122-221 6-108 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.3 0.00026 8.8E-09 69.4 6.8 92 120-222 4-117 (388)
73 2fp4_B Succinyl-COA ligase [GD 97.0 0.00071 2.4E-08 66.4 6.4 91 120-221 4-123 (395)
74 2io8_A Bifunctional glutathion 96.6 0.015 5.1E-07 60.2 12.4 154 55-229 400-600 (619)
75 3n6x_A Putative glutathionylsp 91.6 0.11 3.8E-06 51.9 3.8 141 78-230 268-451 (474)
76 2vob_A Trypanothione synthetas 89.3 4.4 0.00015 42.0 13.4 153 56-229 417-615 (652)
77 3mwd_A ATP-citrate synthase; A 88.2 2.1 7.2E-05 42.1 9.7 81 140-221 26-127 (425)
78 3pff_A ATP-citrate synthase; p 67.5 10 0.00036 40.3 7.4 95 125-221 12-127 (829)
79 3k1t_A Glutamate--cysteine lig 33.3 1.1E+02 0.0037 29.7 7.5 58 167-227 278-359 (432)
80 2xko_C PIPX, global nitrogen r 31.6 12 0.00042 28.4 0.5 19 203-221 4-24 (89)
81 1vlv_A Otcase, ornithine carba 31.1 65 0.0022 30.2 5.6 73 27-112 57-142 (325)
82 1dxh_A Ornithine carbamoyltran 30.6 49 0.0017 31.2 4.7 73 27-112 44-129 (335)
83 1duv_G Octase-1, ornithine tra 30.5 49 0.0017 31.2 4.6 73 27-112 43-128 (333)
84 3s99_A Basic membrane lipoprot 30.5 79 0.0027 29.7 6.2 80 23-107 21-112 (356)
85 2w37_A Ornithine carbamoyltran 30.3 54 0.0019 31.3 4.9 73 27-112 66-151 (359)
86 3tpf_A Otcase, ornithine carba 29.1 62 0.0021 30.1 5.0 74 27-113 35-121 (307)
87 3n5b_B ASR0485 protein; PII, P 27.1 17 0.00058 28.7 0.6 24 198-221 22-47 (112)
88 2ef0_A Ornithine carbamoyltran 25.5 63 0.0022 30.0 4.3 73 27-112 44-129 (301)
89 4a8t_A Putrescine carbamoyltra 25.0 1.1E+02 0.0037 28.9 5.9 73 27-112 62-147 (339)
90 4f2g_A Otcase 1, ornithine car 24.2 60 0.0021 30.2 3.9 73 27-112 44-129 (309)
91 1oth_A Protein (ornithine tran 23.7 1.1E+02 0.0038 28.6 5.7 73 27-112 45-130 (321)
92 4ep1_A Otcase, ornithine carba 23.4 75 0.0026 30.0 4.5 73 27-112 69-154 (340)
93 3gd5_A Otcase, ornithine carba 23.3 73 0.0025 29.9 4.4 74 27-113 47-133 (323)
94 4a8p_A Putrescine carbamoyltra 22.9 1.1E+02 0.0037 29.1 5.5 73 27-112 40-125 (355)
95 1pvv_A Otcase, ornithine carba 21.3 1.1E+02 0.0039 28.4 5.2 73 27-112 45-130 (315)
96 4h31_A Otcase, ornithine carba 20.8 1.3E+02 0.0044 28.5 5.6 71 27-110 69-152 (358)
97 4ekn_B Aspartate carbamoyltran 20.8 1.1E+02 0.0036 28.5 4.9 90 26-127 38-145 (306)
98 3n6x_A Putative glutathionylsp 20.0 70 0.0024 31.7 3.6 24 287-312 141-164 (474)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=4e-60 Score=461.54 Aligned_cols=304 Identities=31% Similarity=0.538 Sum_probs=255.9
Q ss_pred CcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccc------------hhhHH
Q 019076 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSG------------MEWCK 94 (346)
Q Consensus 27 ~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~------------~~~~~ 94 (346)
++++|||||++||.++|+++.|.+.++ ++|++++.||+++++..|++||++|||+++ ..+.+
T Consensus 17 ~~~~vG~~l~~kk~~~~~~~~l~~al~------~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~ 90 (346)
T 2q7d_A 17 KGKRVGYWLSEKKIKKLNFQAFAELCR------KRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVH 90 (346)
T ss_dssp TTCEEEEECCHHHHHHHTHHHHHHHHH------TTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHH
T ss_pred CceEEEEEECcccchhhhHHHHHHHHH------hCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHH
Confidence 578999999999999999999999999 999999999999999999999999999987 36778
Q ss_pred HHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccC-CCChhhHHHhhCCCCcEEEecC
Q 019076 95 IIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 95 ~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~-~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+++|...|+|++||||+++|++|.||+.|++.|+++......++|++|+|+++.+. ..++.+.+...+++||+|+||+
T Consensus 91 ~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 170 (346)
T 2q7d_A 91 RFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTR 170 (346)
T ss_dssp HHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECS
T ss_pred HHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEec
Confidence 899998889999999999999999999999999998543334469999999999643 2445455555789999999999
Q ss_pred cCCCCCCceeeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeeccc--cc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPR--VS 251 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~--vs 251 (346)
.++||+ +|+|+++++.++|..++.|+|+||||+|+|++|||||||+++++++|+|+|+|..+. +..++|+|.. ++
T Consensus 171 ~g~Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~ 247 (346)
T 2q7d_A 171 VAHGTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVS 247 (346)
T ss_dssp BCSSTT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTS
T ss_pred CCCcce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeec
Confidence 999996 999999999999999999999999999999999999999999999999999886543 2346677754 67
Q ss_pred ccccccCCCCCCC--CCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCcccHHHHHHH
Q 019076 252 SAAASADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDF 329 (346)
Q Consensus 252 ~~~~~~~~~~~~~--~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l~~~ 329 (346)
+++.++.....++ ...++++.++++++|.+++++||++++|||+|++.++| +|||+|||+||||+|+++++..++++
T Consensus 248 ~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~~g~~~~~~~i~~~ 326 (346)
T 2q7d_A 248 KPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGYEGVSEFFTDLLNH 326 (346)
T ss_dssp STTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCCTTCTTHHHHHHHH
T ss_pred cCCccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCccccccchHHHHHHHH
Confidence 6664431111111 12345667889999999999999999999999986445 69999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 019076 330 LLSLEQSKCRK 340 (346)
Q Consensus 330 l~~~i~~~~~~ 340 (346)
+.+.++++...
T Consensus 327 l~~~~~~~~~~ 337 (346)
T 2q7d_A 327 IATVLQGQSTA 337 (346)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHhhccCCC
Confidence 99999876653
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=100.00 E-value=4.4e-36 Score=286.39 Aligned_cols=292 Identities=20% Similarity=0.349 Sum_probs=216.9
Q ss_pred CCCCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEE--EEecCCCCCCCCC-CccEEEEcccch--hhHHHHHH
Q 019076 24 LQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISF--VAIDQNRPLSDQG-PFDVVLHKLSGM--EWCKIIED 98 (346)
Q Consensus 24 ~~~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~--v~id~~~~l~~q~-~fDvilhK~t~~--~~~~~l~~ 98 (346)
...+..+||++..+++. + + .+...++++|+++ +.+|++.++..++ ++|+++++.++. .+.+.++.
T Consensus 7 ~~~~~m~i~il~~~~~~-s-----~----~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~ 76 (324)
T 1z2n_X 7 TTKQTVSLFIWLPESKQ-K-----T----LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRK 76 (324)
T ss_dssp ---CEEEEEEECCHHHH-H-----H----HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHH
T ss_pred ccCCcEEEEEEEchhhh-h-----h----hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHH
Confidence 33456789999977654 2 2 5566677999999 9999977777666 899999999774 45667777
Q ss_pred HHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCC
Q 019076 99 YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS 178 (346)
Q Consensus 99 y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS 178 (346)
+...+++++++|+++++..+.||..+.+.|++ +||++|+++++.+ .+++.+.+...+++||+|+||..+.||
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~dK~~~~~~l~~-------~gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~ 148 (324)
T 1z2n_X 77 YEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NNIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGT 148 (324)
T ss_dssp HHHHCTTSEEETCHHHHHHHTBHHHHHHHHHH-------TTCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSS
T ss_pred HHHhCCCCeEeCCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCC
Confidence 77777899999999999999999999999997 5899999998853 223333333345779999999986666
Q ss_pred CCceeeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecc----------
Q 019076 179 AKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFP---------- 248 (346)
Q Consensus 179 ~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~---------- 248 (346)
..+|++.++.+.++|..+..++++||||++.|++++|+|+|+++..+.|++++++..+...+ ...|++.
T Consensus 149 ~~s~gv~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~ 227 (324)
T 1z2n_X 149 FNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKS-VDFNNQHLEDILSWPEG 227 (324)
T ss_dssp SGGGEEEEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCCE-EEEETTBGGGGGGSCTT
T ss_pred ccceeeEEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCccc-eeeccccchhhhccccc
Confidence 66799999999999999889999999999889999999999999888888887764322111 1122221
Q ss_pred cccccc-------cc-cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 249 RVSSAA-------AS-ADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 249 ~vs~~~-------~~-~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
.+++.. .. +.... .+......+.+.++++|.++.++||+.++|||++++.++| ++||+|||.+|||++++
T Consensus 228 ~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g-~~~vlEvN~~Pg~~~~~ 305 (324)
T 1z2n_X 228 VIDKQDIIENSANRFGSKILE-DPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQG-NPLVVDVNVFPSYGGKV 305 (324)
T ss_dssp SSCHHHHHHHHTTTTCCCBCS-CTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEECGGGCS-SCEEEEEEESCCTTSCB
T ss_pred cccccccccccccchhhcccc-CCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCC-CEEEEEEcCCCCcCCCC
Confidence 111100 00 00000 0111111222579999999999999999999999874344 68999999999999999
Q ss_pred ccHHHHHHHHHHHHHhh
Q 019076 321 DYEHIFTDFLLSLEQSK 337 (346)
Q Consensus 321 ~~~~~l~~~l~~~i~~~ 337 (346)
++. .+.+++.+.+.++
T Consensus 306 ~~~-~i~~~l~~~~~~~ 321 (324)
T 1z2n_X 306 DFD-WFVEKVALCYTEV 321 (324)
T ss_dssp CHH-HHHHHHHHHHHC-
T ss_pred CHH-HHHHHHHHHHHHh
Confidence 987 8888888887654
No 3
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=100.00 E-value=3e-34 Score=271.05 Aligned_cols=276 Identities=20% Similarity=0.247 Sum_probs=198.9
Q ss_pred CCCCCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEe----cCCCCCCCCCCccEEEEcccchhhHHHHHH
Q 019076 23 VLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAI----DQNRPLSDQGPFDVVLHKLSGMEWCKIIED 98 (346)
Q Consensus 23 ~~~~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~i----d~~~~l~~q~~fDvilhK~t~~~~~~~l~~ 98 (346)
+++.+.++||.|.+.||.+|- |.-.-|.|.+. ..-++++.- -++.|.++++-+|++|...++..-.+...+
T Consensus 2 ~~~~~~~~~gvcam~~k~~s~--pm~~il~rl~~---~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~ 76 (330)
T 3t7a_A 2 SFTERQIVVGICSMAKKSKSK--PMKEILERISL---FKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVA 76 (330)
T ss_dssp ----CCEEEEEESCHHHHTSH--HHHHHHHHHTT---STTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHH
T ss_pred CCCCCceEEEEEecccccccH--HHHHHHHHhcc---cCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHH
Confidence 345678999999999997663 33333444221 223444432 236788899999999999998766777888
Q ss_pred HHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC--------hhhHH--HhhCCCCcE
Q 019076 99 YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS--------IPDQV--FEAGLKLPL 168 (346)
Q Consensus 99 y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~--------~~~~l--~~~~l~fPv 168 (346)
|.+. -+.++||++.++..++||..++++|++ ++||||+++++.++... ..+.+ ....+++|+
T Consensus 77 y~~l-r~p~~INd~~~q~~~~DK~~~~~iL~~-------~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPf 148 (330)
T 3t7a_A 77 YAKL-RNPFVINDLNMQYLIQDRREVYSILQA-------EGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPF 148 (330)
T ss_dssp HHHH-HCCEESBCSTHHHHHTBHHHHHHHHHH-------TTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSE
T ss_pred HHHH-hCCceeCCHHHHHHHHHHHHHHHHHHH-------cCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCe
Confidence 8865 346999999999999999999999997 69999999999754320 00111 124578999
Q ss_pred EEecCcCCCCCCceeeEEEeChhh---hh-------------------ccCCCeEEEecccCCCeEEEEEEECCEEE-EE
Q 019076 169 VAKPLVVDGSAKSHELFLAYDRFS---LS-------------------ELEPPMLLQEFVNHGGILFKIYIIGETIK-VV 225 (346)
Q Consensus 169 VvKP~~a~GS~~sh~m~lv~~~~~---L~-------------------~l~~p~v~QEfI~h~G~~~KV~VvG~~v~-~~ 225 (346)
|+||+. || .|+++|.+.... .. .-+.++++||||+++|+|+||||||+++. ++
T Consensus 149 VeKPv~--Gs--dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am 224 (330)
T 3t7a_A 149 VEKPVS--AE--DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAE 224 (330)
T ss_dssp EEEESB--TT--CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEE
T ss_pred eEcccc--cc--cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEE
Confidence 999998 54 566666665432 11 11457999999999999999999999975 57
Q ss_pred EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeE
Q 019076 226 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVF 305 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~ 305 (346)
.|+| |.. .++|++| .. . ++...+ ....++.+++|.++++++|++++|||++++++ ++
T Consensus 225 ~R~s-p~~-~G~~r~N--------~~-g-----G~~~~~----v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~---~~ 281 (330)
T 3t7a_A 225 ARKS-PAL-DGKVERD--------SE-G-----KEVRYP----VILNAREKLIAWKVCLAFKQTVCGFDLLRANG---QS 281 (330)
T ss_dssp EEEC-TTS-SCBCCBC--------TT-S-----CBCCEE----CCCCHHHHHHHHHHHHHTTBSEEEEEEEEETT---EE
T ss_pred EEeC-CCC-CCcEEEc--------CC-C-----Cceeee----ecCCHHHHHHHHHHHHHhCCceEEEEEEEECC---cc
Confidence 7776 421 1345543 11 1 111111 22346689999999999999999999999753 68
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHHHHHHHhhc
Q 019076 306 YVIDINYFPGYGKMPDYEHIFTDFLLSLEQSKC 338 (346)
Q Consensus 306 ~ViDVN~fPg~~gv~~~~~~l~~~l~~~i~~~~ 338 (346)
||+|||.||-.++..+|+..+...|.+.+.++.
T Consensus 282 ~V~EVNg~~fvk~~~~yyd~~a~il~~~~~~~~ 314 (330)
T 3t7a_A 282 YVCDVNGFSFVKNSMKYYDDCAKILGNIVMREL 314 (330)
T ss_dssp EEEEEEESCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888888887766653
No 4
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.97 E-value=1.6e-30 Score=249.10 Aligned_cols=243 Identities=13% Similarity=0.140 Sum_probs=179.5
Q ss_pred cccccCCcEEEEecCCCCCC-----CCC-------CccEEEEcccchh------hHHHHHHHHHhCCCeeeeChHHHHHH
Q 019076 56 LTHTNKGISFVAIDQNRPLS-----DQG-------PFDVVLHKLSGME------WCKIIEDYRQKHPEVTILDPPDAIKH 117 (346)
Q Consensus 56 ~~~~~~Gi~~v~id~~~~l~-----~q~-------~fDvilhK~t~~~------~~~~l~~y~~~~p~v~VIDp~~ai~~ 117 (346)
+.++..++++..++...++. ..| .+|++|.|..+.. ++. +.++++. .|+++||++++|.+
T Consensus 33 e~a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~D~vi~R~~~~~~~~~~~~r~-vl~~le~-~GvpviN~~~sI~~ 110 (309)
T 1i7n_A 33 EQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRH-LVIGMQY-AGLPSINSLESIYN 110 (309)
T ss_dssp EEECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCCSSTTCCCHH-HHHHHHH-TTCCEESCHHHHHH
T ss_pred HHHhhcCceEEEEcCCCceEEeehhhcCCccceeccCCEEEEecccccccccchHHH-HHHHHHH-CCccccCCHHHHHH
Confidence 55667788888877755322 122 5899999997632 343 3444443 68999999999999
Q ss_pred hcCH----HHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhh
Q 019076 118 LHNR----QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 193 (346)
Q Consensus 118 l~dR----~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L 193 (346)
|.|| ..++++|+++++ +++|.|++.... + ..+. ...++||+|+||+. || ++.+|.++.+++++
T Consensus 111 ~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~~-~---~~~~--~~~~g~PvVvK~~~--Gs-~G~GV~lv~~~~~~ 177 (309)
T 1i7n_A 111 FCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYYP-N---HREM--LTLPTFPVVVKIGH--AH-SGMGKVKVENHYDF 177 (309)
T ss_dssp TSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-S---GGGG--SSCCCSSEEEEESS--CS-TTTTEEEECSHHHH
T ss_pred hCCccHHHHHHHHHHHhCCC----CCCCCCCEEeeC-C---hhhh--hhccCCCEEEEeCC--CC-ceeCeEEECCHHHH
Confidence 9999 567788887532 255854444332 2 1222 23479999999998 76 89999999999887
Q ss_pred hcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCC
Q 019076 194 SEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 266 (346)
Q Consensus 194 ~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~ 266 (346)
.++ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|++|.+ ++..
T Consensus 178 ~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~a~~Rr~~~----g~wrtN~~---------------~~~~---- 233 (309)
T 1i7n_A 178 QDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSIS----GNWKTNTG---------------SAML---- 233 (309)
T ss_dssp HHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSC----TTTSCSCC---------------CSSE----
T ss_pred HHHHHHHhccCCeEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCCeecCC---------------ccee----
Confidence 653 56789999999 79999999999999999999743 35654411 1111
Q ss_pred CCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccC--CCCCCCCcc-cHHHHHHHHHHHHHhhcc
Q 019076 267 AELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY--FPGYGKMPD-YEHIFTDFLLSLEQSKCR 339 (346)
Q Consensus 267 ~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~~~ViDVN~--fPg~~gv~~-~~~~l~~~l~~~i~~~~~ 339 (346)
..++++++.+++|.++++++ |++++|||++.+.+ | ++||+|||. +||++|.+. ....+++++.+.+++.+.
T Consensus 234 e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~-g-~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~~ 308 (309)
T 1i7n_A 234 EQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKD-G-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLLS 308 (309)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred eecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHcC
Confidence 12345677899999999999 89999999998753 3 589999999 999998864 456788888888876653
No 5
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.97 E-value=9.1e-30 Score=246.83 Aligned_cols=241 Identities=12% Similarity=0.149 Sum_probs=176.1
Q ss_pred ccccCCcEEEEecCCCCCC-----CCC--------CccEEEEcccchh------hHHHHHHHHHhCCCeeeeChHHHHHH
Q 019076 57 THTNKGISFVAIDQNRPLS-----DQG--------PFDVVLHKLSGME------WCKIIEDYRQKHPEVTILDPPDAIKH 117 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~-----~q~--------~fDvilhK~t~~~------~~~~l~~y~~~~p~v~VIDp~~ai~~ 117 (346)
.++..++++..++...+.. ..| .+|++|.|..+.. ++. +.++++. .|+++||++++|.+
T Consensus 50 qa~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~r~~~~D~vi~R~~~~~~~~~~~yr~-vl~~le~-~GvpviN~~~sI~~ 127 (344)
T 2p0a_A 50 QAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRS-LVIGLQY-GGLPAVNSLYSVYN 127 (344)
T ss_dssp EECGGGEEEEEETTSCEEEEEC----------CEECCSEEEECSCSEEGGGTEECHH-HHHHHHH-TTCCEESCHHHHHH
T ss_pred hhhhcceEEEEEcCcccEEEeecccCCccccccCCCCCEEEEeccccccccchhHHH-HHHHHHH-CCceecCCHHHHHh
Confidence 3445568888877755322 112 6899999997632 443 4444443 68999999999999
Q ss_pred hcCH----HHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhh
Q 019076 118 LHNR----QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 193 (346)
Q Consensus 118 l~dR----~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L 193 (346)
|.|| ..++++|.++++ +++|.|++.... +...+ ...++||+|+||+. || ++.+|.++.+++++
T Consensus 128 ~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~~-~~~~~-----~~~~g~PvVvK~~~--Gs-~G~GV~lve~~~~~ 194 (344)
T 2p0a_A 128 FCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFFP-NHKPM-----VTAPHFPVVVKLGH--AH-AGMGKIKVENQLDF 194 (344)
T ss_dssp TTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SSTTC-----CCCSSSSEEEEESS--CC-TTTTEEEECSHHHH
T ss_pred hCCchHHHHHHHHHHHHCCC----CCCCCCCEEecC-chhhh-----hhccCCCEEEEeCC--CC-ceeCeEEECCHHHH
Confidence 9999 677888887542 355854444342 22211 23579999999998 76 89999999999888
Q ss_pred hcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCC
Q 019076 194 SEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 266 (346)
Q Consensus 194 ~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~ 266 (346)
.++ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|++|.+ ++..
T Consensus 195 ~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vva~~R~~~~----g~wrtN~~---------------~~~~---- 250 (344)
T 2p0a_A 195 QDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSNYKAYMRTSIS----GNWKANTG---------------SAML---- 250 (344)
T ss_dssp HHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTSS---------------SEEE----
T ss_pred HHHHHHHhccCCeEEEEeccC-CCccEEEEEECCEEEEEEEecCC----CCCeecCC---------------ceEE----
Confidence 742 56788999999 79999999999999999998743 24554421 1111
Q ss_pred CCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccC--CCCCCCCccc-HHHHHHHHHHHHHhhc
Q 019076 267 AELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY--FPGYGKMPDY-EHIFTDFLLSLEQSKC 338 (346)
Q Consensus 267 ~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~~~ViDVN~--fPg~~gv~~~-~~~l~~~l~~~i~~~~ 338 (346)
..++++++.+++|.++++++ |++++|||++++.+ | ++||+|||. .|++++.+.. ...+.+++.+.+.++.
T Consensus 251 e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~-G-~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~ 324 (344)
T 2p0a_A 251 EQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKD-G-RDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLP 324 (344)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC
T ss_pred EeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhc
Confidence 12344677899999999999 89999999998753 3 589999999 9999987743 4567777777776654
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.96 E-value=3.7e-29 Score=247.11 Aligned_cols=244 Identities=11% Similarity=0.133 Sum_probs=178.7
Q ss_pred hcccccCCcEEEEecCCCCCC-----CCC-------CccEEEEcccchh------hHHHHHHHHHhCCCeeeeChHHHHH
Q 019076 55 ILTHTNKGISFVAIDQNRPLS-----DQG-------PFDVVLHKLSGME------WCKIIEDYRQKHPEVTILDPPDAIK 116 (346)
Q Consensus 55 ~~~~~~~Gi~~v~id~~~~l~-----~q~-------~fDvilhK~t~~~------~~~~l~~y~~~~p~v~VIDp~~ai~ 116 (346)
++.++..+|++..++....+. ..| .+|++|.|..+.. |+. +.++++. .|++|||++++|.
T Consensus 144 veqa~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~-vlr~lE~-~GvpviNs~~sI~ 221 (422)
T 1pk8_A 144 VEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRS-LVIGLQY-AGIPSVNSLHSVY 221 (422)
T ss_dssp EEEECGGGEEEEEETTSCEEEEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHH-HHHHHHH-TTCCEESCHHHHH
T ss_pred HHHHhhcCceEEEEcCCceeEEeehhhcCCccccccCCCEEEEeccccccccchhHHH-HHHHHHH-CCccccCCHHHHH
Confidence 456777888888877655322 112 5899999997633 443 4444444 6899999999999
Q ss_pred HhcCH----HHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhh
Q 019076 117 HLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 192 (346)
Q Consensus 117 ~l~dR----~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~ 192 (346)
+|.|| ..++++|.++++ +++|.|.+.... +. .+. ...++||+|+||+. || ++.+|.++.++++
T Consensus 222 ~~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~~-~~---~~~--i~~~g~PvVvKp~~--GS-~G~GV~lve~~~~ 288 (422)
T 1pk8_A 222 NFCDKPWVFAQMVRLHKKLGT----EEFPLIDQTFYP-NH---KEM--LSSTTYPVVVKMGH--AH-SGMGKVKVDNQHD 288 (422)
T ss_dssp HTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SG---GGC--CCCSSSSEEEEESS--CC-TTTTEEEECSHHH
T ss_pred HhCCccHHHHHHHHHHHhCCC----CCCCCCceEecC-ch---hhh--hhccCCCEEEEeCC--CC-ceeCeEEeCCHHH
Confidence 99999 567788877532 255744444342 21 121 23578999999998 76 8999999999988
Q ss_pred hhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCC
Q 019076 193 LSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG 265 (346)
Q Consensus 193 L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~ 265 (346)
+..+ +..+++||||+ .|+|+||+|||+++++++|++.. ++|++|.+ .+..
T Consensus 289 l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vva~~Rr~~~----g~WrtNvg---------------~g~~--- 345 (422)
T 1pk8_A 289 FQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQNYKAYMRTSVS----GNWKTNTG---------------SAML--- 345 (422)
T ss_dssp HHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTSS---------------CEEE---
T ss_pred HHHHHHHHhccCceEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCceeccC---------------ceee---
Confidence 7753 56789999999 79999999999999999998743 25655421 1111
Q ss_pred CCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccC--CCCCCCCcc-cHHHHHHHHHHHHHhhcc
Q 019076 266 IAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY--FPGYGKMPD-YEHIFTDFLLSLEQSKCR 339 (346)
Q Consensus 266 ~~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~~~ViDVN~--fPg~~gv~~-~~~~l~~~l~~~i~~~~~ 339 (346)
..++++++.+++|.++++++ |++++|||+|++.+ | ++||+|||. .||+++.+. ....+++++.+.++++..
T Consensus 346 -e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~d-G-~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i~~~~~ 420 (422)
T 1pk8_A 346 -EQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKD-G-RDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQALP 420 (422)
T ss_dssp -EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHHHCC--
T ss_pred -eeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCCCCCCccchhhhHHHHHHHHHHHHHHHhcc
Confidence 12344677899999999999 89999999998753 3 689999999 999998774 356788888888876653
No 7
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.90 E-value=8.7e-23 Score=192.88 Aligned_cols=235 Identities=14% Similarity=0.172 Sum_probs=160.6
Q ss_pred HhhhcccccCCcEEEEecCCCC---CCCCCCccEEEEcccchhhH-HHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHH
Q 019076 52 ARYILTHTNKGISFVAIDQNRP---LSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQ 126 (346)
Q Consensus 52 ~r~~~~~~~~Gi~~v~id~~~~---l~~q~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~ 126 (346)
.......++.|++++.+|.+.. +.....+|+++....+.... ..++.+.+. .|++++.| ++++..+.||..+.+
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~~~ 103 (307)
T 3r5x_A 25 NEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLES-LGIPYSGSNMLSSGICMDKNISKK 103 (307)
T ss_dssp HHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHH-HTCCBSSSCHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHH
Confidence 3333445589999999999853 33345899999988663211 234445443 47888865 999999999999999
Q ss_pred HHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCC
Q 019076 127 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPP 199 (346)
Q Consensus 127 ~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p 199 (346)
.|.+ .+|++|++.++.. .+..... ....++||+|+||..++ .|+++.++.+.++|... ..+
T Consensus 104 ~l~~-------~Gip~p~~~~~~~-~~~~~~~-~~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~~ 171 (307)
T 3r5x_A 104 ILRY-------EGIETPDWIELTK-MEDLNFD-ELDKLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDSE 171 (307)
T ss_dssp HHHH-------TTCCCCCEEEEES-SSCCCHH-HHHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSE
T ss_pred HHHH-------CCCCCCCEEEEeC-hhhhhHH-HHHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCC
Confidence 9997 5899999999864 2322221 22457899999998733 57899999999887653 578
Q ss_pred eEEEecccCCCeEEEEEEECCEEEEE-EeecCCCcccchhhcccceeeccccc-ccccccCCCCCCCCCCCCCChHHHHH
Q 019076 200 MLLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVS-SAAASADDADLDPGIAELPPRPLLER 277 (346)
Q Consensus 200 ~v~QEfI~h~G~~~KV~VvG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~vs-~~~~~~~~~~~~~~~~~~p~~~~~~~ 277 (346)
+++||||+ |+++.|.|+|+++..+ .+... .++++|.... ..+....+..+++. ..+.+++
T Consensus 172 ~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~p~~l~~~-----~~~~i~~ 233 (307)
T 3r5x_A 172 VVIEKYIK--GEEITCSIFDGKQLPIISIRHA-----------AEFFDYNAKYDDASTIEEVIELPAE-----LKERVNK 233 (307)
T ss_dssp EEEEECCC--SEEEEEEEETTEECCCEEEEEE-----------EEEETTEEEEEEEEEEEEECCCCHH-----HHHHHHH
T ss_pred EEEECCcC--CEEEEEEEECCEEeeEEEEEcC-----------CcccChhhcCCCCCCeEecCCCCHH-----HHHHHHH
Confidence 99999996 8999999999986322 21110 1112222111 11111111122110 1346799
Q ss_pred HHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 278 LARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 278 lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+|.++.++||+. ++++|+++++ | ++||+|||..||+.+..
T Consensus 234 ~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~~~s 274 (307)
T 3r5x_A 234 ASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGMTQAS 274 (307)
T ss_dssp HHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCCSTTS
T ss_pred HHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCCCccC
Confidence 999999999998 9999999983 3 79999999999998653
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.90 E-value=2e-22 Score=192.10 Aligned_cols=237 Identities=14% Similarity=0.088 Sum_probs=157.3
Q ss_pred cccccCCcEEEEecCCCCCCC---CCCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHh
Q 019076 56 LTHTNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 130 (346)
Q Consensus 56 ~~~~~~Gi~~v~id~~~~l~~---q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~ 130 (346)
...++.|++++.||.+..... ...+|+++.-+.+... ...++...+. -|++++ ++++++..++||..+.++|++
T Consensus 39 ~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~ 117 (317)
T 4eg0_A 39 QGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDF-YGIRYTGSGVLGSALGLDKFRTKLVWQQ 117 (317)
T ss_dssp HHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHH-HTCEESSCCHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH
Confidence 334489999999997654222 3579999988765321 1235566554 478888 677999999999999999997
Q ss_pred ccccCCCCccccCcEEEEccCCCChhhHH--HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeE
Q 019076 131 LNLSDCNGKVRVPRQMVITKDSLSIPDQV--FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPML 201 (346)
Q Consensus 131 l~~~~~~~~I~~P~~~~i~~~~~~~~~~l--~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v 201 (346)
+|||+|++.++.. .++..+.. ....++||+|+||..++ .|.++.++.+.++|.+. ..+++
T Consensus 118 -------~Gip~p~~~~~~~-~~~~~~~~~~~~~~~g~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~l 186 (317)
T 4eg0_A 118 -------TGVPTPPFETVMR-GDDYAARATDIVAKLGLPLFVKPASEG---SSVAVLKVKTADALPAALSEAATHDKIVI 186 (317)
T ss_dssp -------TTCCCCCEEEEET-TSCHHHHHHHHHHHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCSEEE
T ss_pred -------CCcCCCCEEEEEC-chhHHHHHHHHHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEE
Confidence 5899999999864 33332221 01458999999998743 47899999999987642 46899
Q ss_pred EEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHH
Q 019076 202 LQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLA 279 (346)
Q Consensus 202 ~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA 279 (346)
+||||++ |+++.|.|+|+++..+.+.... .++++|......+.. ..+..+++. ..+.++++|
T Consensus 187 vEe~i~~-G~E~~v~vl~~~~~~~~~i~~~----------~~~~~~~~k~~~g~~~~~~P~~l~~~-----~~~~l~~~a 250 (317)
T 4eg0_A 187 VEKSIEG-GGEYTACIAGDLDLPLIKIVPA----------GEFYDYHAKYVANDTQYLIPCGLPAE-----QETELKRIA 250 (317)
T ss_dssp EEECCCS-SEEEEEEEETTCCCCCEEEEC-------------------------CEEESSCSSCHH-----HHHHHHHHH
T ss_pred EEcCCCC-CcEEEEEEECCcccceEEEeeC----------CceechhhcccCCCeeEEcCCCCCHH-----HHHHHHHHH
Confidence 9999975 9999999999974322111111 123333332211100 011112110 135689999
Q ss_pred HHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 280 RELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 280 ~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
.++.++||+. ++++|++++. +| ++||+|||..||+....-+
T Consensus 251 ~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 251 RRAFDVLGCTDWGRADFMLDA-AG-NAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp HHHHHTTTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTTSHH
T ss_pred HHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCcccHH
Confidence 9999999996 8899999975 34 6999999999999876544
No 9
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.90 E-value=1e-22 Score=188.60 Aligned_cols=227 Identities=14% Similarity=0.170 Sum_probs=156.5
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCCCC-------CCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhc
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPLSD-------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLH 119 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~-------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~ 119 (346)
.+.+.++ ++|++++.+|.+..... ...+|+++++.........++++.+. -+++++++++++..+.
T Consensus 15 ~~~~a~~------~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~ 87 (280)
T 1uc8_A 15 MLFERAE------ALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTA-LGIPVVNRPEVIEACG 87 (280)
T ss_dssp HHHHHHH------HHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHH-TTCCEESCHHHHHHHH
T ss_pred HHHHHHH------HcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHH-CCCceeCCHHHHHHhC
Confidence 3455555 89999999998653311 24689666665432222345555554 4788899999999999
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||..+.+.|.+ .+|++|++..+.+ .+++.+. ...++||+|+||..++ +|+++.++.+.+++.+.
T Consensus 88 dK~~~~~~l~~-------~gi~~p~~~~~~~-~~~~~~~--~~~~~~p~vvKp~~g~---~~~gv~~v~~~~el~~~~~~ 154 (280)
T 1uc8_A 88 DKWATSVALAK-------AGLPQPKTALATD-REEALRL--MEAFGYPVVLKPVIGS---WGRLLAXXXXXXXXXXXXXX 154 (280)
T ss_dssp BHHHHHHHHHH-------TTCCCCCEEEESS-HHHHHHH--HHHHCSSEEEECSBCC---BCSHHHHHHHHHC-------
T ss_pred CHHHHHHHHHH-------cCcCCCCeEeeCC-HHHHHHH--HHHhCCCEEEEECCCC---Ccccceecccccccchhhhh
Confidence 99999999997 5899999998852 2222222 2347899999999743 47888888888776541
Q ss_pred --------CCCeEEEecccCCCeEEEEEEECCEEEEE-EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCC
Q 019076 197 --------EPPMLLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 267 (346)
Q Consensus 197 --------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~ 267 (346)
..++++||||+..+++++++++|+++... .|.+ . +|..+ ... ++...|.
T Consensus 155 ~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~-~-----~~~~~--------~~~------g~~~~p~-- 212 (280)
T 1uc8_A 155 KEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS-A-----HWITN--------TAR------GGQAENC-- 212 (280)
T ss_dssp -----CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC----------------------------------CEEC--
T ss_pred HhhhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEec-C-----Ccccc--------ccC------CccccCC--
Confidence 46899999998768999999999997654 3332 2 22211 000 1111121
Q ss_pred CCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 268 ELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 268 ~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
++ .+.++++|.++.++||+.++|+|++++.+ ++||+|||..||+..+.
T Consensus 213 ~l--~~~~~~~~~~~~~~lg~g~~~vD~~~~~~---g~~~iEiN~r~g~~~~~ 260 (280)
T 1uc8_A 213 PL--TEEVARLSVKAAEAVGGGVVAVDLFESER---GLLVNEVNHTMEFKNSV 260 (280)
T ss_dssp CC--CHHHHHHHHHHHHHTTCSEEEEEEEEETT---EEEEEEEETTCCCTTHH
T ss_pred CC--CHHHHHHHHHHHHHhCCCeEEEEEEEeCC---CeEEEEEeCCCCccchh
Confidence 11 34689999999999999999999999753 49999999999988753
No 10
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.89 E-value=3.8e-22 Score=192.90 Aligned_cols=207 Identities=18% Similarity=0.224 Sum_probs=142.6
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|++++-+.+.... ..++.+.+. .|++++.| +.++..++||..+.+.|++ .||++|++.++......
T Consensus 90 ~~D~v~~~lhG~~gedg~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~-- 159 (346)
T 3se7_A 90 RLDLVLPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARS-------AGIATPNFWTVTADEKI-- 159 (346)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCBCCCEEEEETTSCC--
T ss_pred CCCEEEEccCCCCCCChHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------cCcCcCCEEEEcCcHHH--
Confidence 579999888664321 245666654 56887765 8999999999999999997 58999999998643311
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCE----EEEE
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET----IKVV 225 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~ 225 (346)
....++||+|+||..++ .|.++.++.+.++|.. .+.++++||||+ |+++.|.|+++. +..+
T Consensus 160 ---~~~~lg~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~ 231 (346)
T 3se7_A 160 ---PTDQLTYPVFVKPARSG---SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEV 231 (346)
T ss_dssp ---CTTTCCSSEEEEESSCC---TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCC
T ss_pred ---HHHhcCCCEEEEeCCCC---CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEee
Confidence 23468999999998644 3788999999988765 257899999996 999999999872 2222
Q ss_pred EeecCCCcccchhhcccceeec----ccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEe
Q 019076 226 RRFSLPNVSKRELAKVVSVFRF----PRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIRE 298 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~----~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~ 298 (346)
.+... ..++|+| ......+.. ..+..+++. ..+.++++|.++.++||+ .++++|++++
T Consensus 232 ~e~~~----------~~~~~d~~q~~~~ky~~~~~~~~~pa~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~vD~~~~ 296 (346)
T 3se7_A 232 DQITL----------SHGFFKIHQESTPESGSDNSAVTVPADISTT-----SRSLVQDTAKAVYRALGCRGLSRVDLFLT 296 (346)
T ss_dssp EEECC----------C--------------CGGGSCEESSCCCCHH-----HHHHHHHHHHHHHHHHTCCEEEEEEEEEC
T ss_pred EEEec----------CCCCcCcccchhccccCCCeeEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEe
Confidence 22221 1234555 332221110 011112110 134689999999999999 6888999998
Q ss_pred cCcCCeEEEEeccCCCCCCCCc
Q 019076 299 HGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 299 ~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
.+ | ++|++|||..||+.+..
T Consensus 297 ~~-g-~~~vlEiN~rPG~t~~s 316 (346)
T 3se7_A 297 ED-G-KVVLNEVNTFPGMTSYS 316 (346)
T ss_dssp TT-S-CEEEEEEESSCCCSTTC
T ss_pred CC-C-CEEEEEEeCCCCCCccc
Confidence 53 4 69999999999998654
No 11
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.87 E-value=3.5e-21 Score=180.92 Aligned_cols=230 Identities=17% Similarity=0.182 Sum_probs=155.7
Q ss_pred cccCCcEEEEecCCCCCCC---CCCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhcc
Q 019076 58 HTNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLN 132 (346)
Q Consensus 58 ~~~~Gi~~v~id~~~~l~~---q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~ 132 (346)
+.++|++++.+|.+..... ...+|+++.+...... ...++...+. -+++++ ++++++..+.||..+.+.|++
T Consensus 30 l~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~-~g~~~~g~~~~~~~~~~dK~~~~~~l~~-- 106 (306)
T 1iow_A 30 LREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL-MGLPYTGSGVMASALSMDKLRSKLLWQG-- 106 (306)
T ss_dssp HHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHH--
T ss_pred HHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH--
Confidence 3389999999999753322 2478999988743110 0123344433 367776 889999999999999999997
Q ss_pred ccCCCCccccCcEEEEccCCCChhhH------HHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCC
Q 019076 133 LSDCNGKVRVPRQMVITKDSLSIPDQ------VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPP 199 (346)
Q Consensus 133 ~~~~~~~I~~P~~~~i~~~~~~~~~~------l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p 199 (346)
++|++|++..+... +..+. -....++||+|+||..+. .|.++.++.+.++|... ..+
T Consensus 107 -----~gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~---~~~gv~~v~~~~el~~~~~~~~~~~~~ 176 (306)
T 1iow_A 107 -----AGLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREG---SSVGMSKVVAENALQDALRLAFQHDEE 176 (306)
T ss_dssp -----TTCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCC---TTTTCEEESSGGGHHHHHHHHTTTCSE
T ss_pred -----CCCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhhCCC
Confidence 58999999988532 22110 012468999999998743 57899999999887642 578
Q ss_pred eEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeeccccc-cccc-ccCCCCCCCCCCCCCChHHHHH
Q 019076 200 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVS-SAAA-SADDADLDPGIAELPPRPLLER 277 (346)
Q Consensus 200 ~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs-~~~~-~~~~~~~~~~~~~~p~~~~~~~ 277 (346)
+++||||+ |++++|.++|+++..+.+....+ +.++|.... .++. ...+..+++ ...+.+.+
T Consensus 177 ~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~g~~~~~~p~~l~~-----~~~~~i~~ 239 (306)
T 1iow_A 177 VLIEKWLS--GPEFTVAILGEEILPSIRIQPSG----------TFYDYEAKFLSDETQYFCPAGLEA-----SQEANLQA 239 (306)
T ss_dssp EEEEECCC--CCEEEEEEETTEECCCEEEECSS----------SSSCHHHHHTCSCCEEESSCCCCH-----HHHHHHHH
T ss_pred EEEEeCcC--CEEEEEEEECCCccceEEEEeCC----------CeEchhheecCCCeeEEcCCCCCH-----HHHHHHHH
Confidence 99999996 89999999999864333222111 112221100 0000 001111111 01346889
Q ss_pred HHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 278 LARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 278 lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
+|.++.++||+. ++++|++++. +| ++|++|||..||+.+.
T Consensus 240 ~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 240 LVLKAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGMTSH 280 (306)
T ss_dssp HHHHHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCCSTT
T ss_pred HHHHHHHHcCCceEEEEEEEEcC-CC-CEEEEEecCCCCCCCC
Confidence 999999999996 9999999974 34 6999999999998764
No 12
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.85 E-value=1.7e-20 Score=182.29 Aligned_cols=209 Identities=16% Similarity=0.183 Sum_probs=138.6
Q ss_pred CCccEEEEcccch--hhHHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC-
Q 019076 78 GPFDVVLHKLSGM--EWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL- 153 (346)
Q Consensus 78 ~~fDvilhK~t~~--~~~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~- 153 (346)
..+|+|+..+.+. +. ..++...+. .|++++.| ++++..+.||..+.++|++ .||++|++..+.....
T Consensus 86 ~~~D~v~~~~~g~~~ed-~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~ 156 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGED-GTIQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEH-------RGLPQLPYISFLRSEYE 156 (364)
T ss_dssp SBCSEEEEECCCSSSCT-THHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHH-------HTCCCCCEEEEEHHHHH
T ss_pred cCCCEEEEeCCCCCCcC-HHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEechhhc
Confidence 3589999887432 11 234555543 46888765 8999999999999999997 4899999998853210
Q ss_pred -----ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCE
Q 019076 154 -----SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 154 -----~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
.+.+ ....++||+|+||..++ .|.+|.++.+.++|... +.++++||||+ |+++.|.|+|+.
T Consensus 157 ~~~~~~~~~--~~~~~g~PvvvKP~~g~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 229 (364)
T 2i87_A 157 KYEHNILKL--VNDKLNYPVFVKPANLG---SSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGND 229 (364)
T ss_dssp HHHHHHHHH--HHHHCCSSEEEEESSCS---SCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESS
T ss_pred ccchhHHHH--HHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCC
Confidence 1111 12458999999998744 36799999999887642 57899999996 899999999875
Q ss_pred ---EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCC-cEeEEEE
Q 019076 222 ---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGL-RLFNIDM 295 (346)
Q Consensus 222 ---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl-~lfGvDv 295 (346)
+....+. ....++|+|......+.. ....|. .++ ..+.++++|.++.++||+ .+++||+
T Consensus 230 ~~~~~~~~e~----------~~~~~~~~~~~k~~~g~~---~~~~pa--~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 294 (364)
T 2i87_A 230 YPEATWPGEV----------VKDVAFYDYKSKYKDGKV---QLQIPA--DLDEDVQLTLRNMALEAFKATDCSGLVRADF 294 (364)
T ss_dssp SCEECCCEEE----------CCSCCC-----------C---CEESSC--SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CcEEeeeEEE----------ecCCCcCCHHHcccCCCe---eEEeCC--CCCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2111111 111133444332211110 001111 111 134689999999999999 6889999
Q ss_pred EEecCcCCeEEEEeccCCCCCCCC
Q 019076 296 IREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 296 i~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
+++. +| ++||+|||..||+...
T Consensus 295 ~~~~-~g-~~~viEiN~rpg~t~~ 316 (364)
T 2i87_A 295 FVTE-DN-QIYINETNAMPGFTAF 316 (364)
T ss_dssp EECT-TC-CEEEEEEESSCCCSTT
T ss_pred EEec-CC-CEEEEEEeCCCCCCch
Confidence 9974 34 6999999999999754
No 13
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.85 E-value=5.3e-20 Score=180.16 Aligned_cols=215 Identities=18% Similarity=0.208 Sum_probs=146.3
Q ss_pred CCccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC--
Q 019076 78 GPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-- 153 (346)
Q Consensus 78 ~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~-- 153 (346)
..+|+||..+.+.... ..++...+. -|++++ ++++++..++||..+.++|++ +|||+|++.++.+..+
T Consensus 92 ~~~D~v~~~~~g~~gedg~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~ 163 (377)
T 1ehi_A 92 GDFDIFFPVVHGNLGEDGTLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTV-------NGIRNTKYIVVDPESANN 163 (377)
T ss_dssp CCCSEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHT-------TTCCCCCEEEECTTGGGG
T ss_pred cCCCEEEEecCCCCCcCHHHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCEEEEeccccch
Confidence 3689999888543211 235555554 578887 999999999999999999996 6899999999853221
Q ss_pred -ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCC-eEEEEEEECCE---
Q 019076 154 -SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGG-ILFKIYIIGET--- 221 (346)
Q Consensus 154 -~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G-~~~KV~VvG~~--- 221 (346)
...+ ....++||+|+||..++ .|.+|.++.+.++|... +.++++||||+ | +++.|.|+|+.
T Consensus 164 ~~~~~--~~~~~g~PvvVKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~ 236 (377)
T 1ehi_A 164 WSWDK--IVAELGNIVFVKAANQG---SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN--GARELEVGVIGNDQPL 236 (377)
T ss_dssp CCHHH--HHHHHCSCEEEEESSCC---TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--CSCEEEEEEEESSSCE
T ss_pred HHHHH--HHHhcCCCEEEEeCCCC---CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC--CCceEEEEEEcCCCcE
Confidence 1211 12357899999998743 46889999999887642 56899999995 7 99999999883
Q ss_pred EEEEEeecCCCcccchhhcccceeecccccccc-c--ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019076 222 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA-A--SADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIR 297 (346)
Q Consensus 222 v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~-~--~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~ 297 (346)
+....+.-....+ ...++|+|......+ . ...++.+++. ..+.++++|.++.++||+. +++||+++
T Consensus 237 ~~~~~ei~~~~~~-----~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~~ 306 (377)
T 1ehi_A 237 VSEIGAHTVPNQG-----SGDGWYDYNNKFVDNSAVHFQIPAQLSPE-----VTKEVKQMALDAYKVLNLRGEARMDFLL 306 (377)
T ss_dssp EEEEEEEECTTSS-----SSSCCCCHHHHTTCCTTCEEESSCCCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred EEeeEEEEecCCC-----CcCceeCHHhcccCCCCeeEEeCCCCCHH-----HHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 4433222111000 012344443322111 0 0112222111 1356899999999999997 88899999
Q ss_pred ecCcCCeEEEEeccCCCCCCCC
Q 019076 298 EHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 298 ~~~~g~~~~ViDVN~fPg~~gv 319 (346)
+. +| ++||+|||..||+...
T Consensus 307 ~~-~g-~~~vlEiN~rpg~t~~ 326 (377)
T 1ehi_A 307 DE-NN-VPYLGEPNTLPGFTNM 326 (377)
T ss_dssp CT-TC-CEEEEEEESSCCCSTT
T ss_pred eC-CC-CEEEEEEeCCCCCCcc
Confidence 74 34 6999999999998765
No 14
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.84 E-value=3.3e-20 Score=180.21 Aligned_cols=214 Identities=16% Similarity=0.229 Sum_probs=145.2
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC-h
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-I 155 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~-~ 155 (346)
.+|+++.=+.+.... ..++.+.+. -|++.+ -++.++..|.||..+.++|++ +|||+|++..+...... .
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSL-------AGISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEeecCCChHHH
Confidence 367776655442211 246666665 567776 678999999999999999997 58999999988532211 1
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEee
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRF 228 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~ 228 (346)
.+. ....++||+|+||..+ | .|.+|.+|.+.++|... +.++++|+|| .|+.+-|.|+|+.-..+.
T Consensus 169 ~~~-~~~~lg~PvvVKP~~g-g--~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i--~G~e~~v~vl~~~~~~~~-- 240 (357)
T 4fu0_A 169 MKE-IEANLTYPLFIKPVRA-G--SSFGITKVIEKQELDAAIELAFEHDTEVIVEETI--NGFEVGCAVLGIDELIVG-- 240 (357)
T ss_dssp HHH-HHHHCCSSEEEEETTC-S--SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECC--CSEEEEEEEEESSSEEEC--
T ss_pred HHH-HHHhcCCCEEEEECCC-C--CCCceEEeccHHhHHHHHHHHhccCCeEEEEEec--CCEEEEEEEEecCCceEE--
Confidence 111 2356999999999863 3 47899999999998653 5689999999 599999999987632211
Q ss_pred cCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeE
Q 019076 229 SLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVF 305 (346)
Q Consensus 229 Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~ 305 (346)
+- .+.....++++|......+.. ..++.+++. ..+.++++|.++.++||+. +++||++++. +| ++
T Consensus 241 --~v---~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~-----~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~-dg-~~ 308 (357)
T 4fu0_A 241 --RV---DEIELSSGFFDYTEKYTLKSSKIYMPARIDAE-----AEKRIQEAAVTIYKALGCSGFSRVDMFYTP-SG-EI 308 (357)
T ss_dssp --CC---EEEEECHHHHTSCSBCSSCCEEEESSCSCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CE
T ss_pred --EE---EEEEcccccccccccccCCCceEecCCCCCHH-----HHHHHHHHHHHHHHHhCCcceEEEEEEEeC-CC-CE
Confidence 00 011111234455544332211 122222221 1456899999999999995 7789999974 44 79
Q ss_pred EEEeccCCCCCCCCc
Q 019076 306 YVIDINYFPGYGKMP 320 (346)
Q Consensus 306 ~ViDVN~fPg~~gv~ 320 (346)
||+|||..||+....
T Consensus 309 ~vlEvNt~PG~t~~S 323 (357)
T 4fu0_A 309 VFNEVNTIPGFTSHS 323 (357)
T ss_dssp EEEEEESSCCCSTTC
T ss_pred EEEEEeCCCCCCccc
Confidence 999999999998643
No 15
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.84 E-value=6.5e-20 Score=180.39 Aligned_cols=259 Identities=15% Similarity=0.143 Sum_probs=160.0
Q ss_pred cEEEEEEe---cccccccccchHHHHHHhhhcccccCCcEEEEecCCCC------------------CCCC---------
Q 019076 28 RLVVGYAL---TSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRP------------------LSDQ--------- 77 (346)
Q Consensus 28 ~~~vGy~l---~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~------------------l~~q--------- 77 (346)
..+|+..+ |....= |+...........+.|+++++||.++. +...
T Consensus 37 ~~~v~vl~GG~S~E~ev-----Sl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (383)
T 3k3p_A 37 KETLVLLYGGRSAERDV-----SVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKI 111 (383)
T ss_dssp CEEEEEEEECSSTTHHH-----HHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEE
T ss_pred CCeEEEEeCCCCCcchH-----HHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccc
Confidence 34677766 333332 333334444445688999999998642 0000
Q ss_pred ------CCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCc-cccCcEEEE
Q 019076 78 ------GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGK-VRVPRQMVI 148 (346)
Q Consensus 78 ------~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~-I~~P~~~~i 148 (346)
..+|+++.-+.+... -..++.+.+. -|++++ .++.++..++||..+.++|++ .+ ||+|++.++
T Consensus 112 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~G~Ipvp~~~~~ 183 (383)
T 3k3p_A 112 KPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEV-LKMPYVGTNILSSSVAMDKITTNQVLES-------ATTIPQVAYVAL 183 (383)
T ss_dssp CGGGGCCTTCEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------HCCCCBCCEEEE
T ss_pred cccccccCCCEEEEcCCCCCcchHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHh-------CCCcCCCCEEEE
Confidence 157999987765321 1246666655 578776 568999999999999999997 48 999999998
Q ss_pred ccCCCC--hhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEEC
Q 019076 149 TKDSLS--IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIG 219 (346)
Q Consensus 149 ~~~~~~--~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG 219 (346)
...... .... ....++||+|+||..++ .|.++.++.++++|.+. +.++++||||+ |++|.|.|+|
T Consensus 184 ~~~~~~~~~~~~-~~~~lg~PvvVKP~~gg---ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~ 257 (383)
T 3k3p_A 184 IEGEPLESKLAE-VEEKLIYPVFVKPANMG---SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILG 257 (383)
T ss_dssp ETTSCHHHHHHH-HHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEE
T ss_pred eCccchhHHHHH-HHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEe
Confidence 643211 1111 23568999999998633 37899999999988642 57899999996 9999999998
Q ss_pred CEEEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEE
Q 019076 220 ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMI 296 (346)
Q Consensus 220 ~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi 296 (346)
+.-..+ +.+ .+.....++|+|...+..+.. ..++.+++. ..+.++++|.++.++||+. ++++|++
T Consensus 258 d~~~~~---~~~----~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~~vDf~ 325 (383)
T 3k3p_A 258 NTDVKT---TLP----GEIVKDVAFYDYEAKYIDNKITMAIPAEIDPV-----IVEKMRDYAATAFRTLGCCGLSRCDFF 325 (383)
T ss_dssp SSSCEE---CCC----EEEC-----------------CEESSCCCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCeeE---Eee----EEEecCCCccchhhcccCCCeeEEecCCCCHH-----HHHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 752110 111 111112345566554432211 112222111 2356899999999999997 7789999
Q ss_pred EecCcCCeEEEEeccCCCCCCCC
Q 019076 297 REHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 297 ~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
++. +| ++||+|||..||+...
T Consensus 326 ~~~-~g-~~~vlEINtrPG~t~~ 346 (383)
T 3k3p_A 326 LTE-DG-KVYLNELNTMPGFTQW 346 (383)
T ss_dssp ECT-TC-CEEEEEEESSCCCC--
T ss_pred EEC-CC-CEEEEEeeCCCCCCcc
Confidence 975 34 6999999999998854
No 16
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.84 E-value=1.5e-19 Score=177.06 Aligned_cols=215 Identities=10% Similarity=0.132 Sum_probs=140.2
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC--
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-- 154 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~-- 154 (346)
.+|+++.-+.+.... ..++.+.+. -|++++ .++.++..++||..|.+.|++ +|||+|++.++......
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRA-------GGIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------CCcCCCCEEEEechhhhhh
Confidence 589999887653211 246777765 578876 467899999999999999997 58999999998643321
Q ss_pred hhhHHHhhCCCCc-EEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEE
Q 019076 155 IPDQVFEAGLKLP-LVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVR 226 (346)
Q Consensus 155 ~~~~l~~~~l~fP-vVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~ 226 (346)
..+. ....++|| +|+||..++ .|.+|.++.++++|... +.++++||||+ |+.+.|.|+|+.-.
T Consensus 170 ~~~~-~~~~lg~P~vvVKP~~gg---ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~--- 240 (372)
T 3tqt_A 170 VYQR-LLDRWGTSELFVKAVSLG---SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAP--- 240 (372)
T ss_dssp HHHH-HHHHC---CEEEEESSCC---SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSC---
T ss_pred HHHH-HHHhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCc---
Confidence 1111 23568999 999998633 37899999999987642 57899999996 89999999988610
Q ss_pred eecCCCcccchhhcccceeeccccccccc---ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcC
Q 019076 227 RFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMR 302 (346)
Q Consensus 227 R~Slp~~~~~~~~~~~g~~~~~~vs~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g 302 (346)
+.+ +- .+.....++|+|......+. ...++.+++. ..+.++++|.++.++||+. ++++|++++. +|
T Consensus 241 ~~~-~~---~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-dg 310 (372)
T 3tqt_A 241 KAS-LP---GEIIPHHDYYSYDAKYLDPNGATTTTSVDLSES-----VTKQIQQIAIDAFKMVHCSGMARVDFFVTP-NN 310 (372)
T ss_dssp EEC-CC---EEEECC---------------CEEESCCCCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC
T ss_pred eEe-ee---EEEecCCCccchhhcccCCCceEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCccEEEEEEEEeC-CC
Confidence 001 11 11111224556654432221 1112222211 1356899999999999998 7789999975 34
Q ss_pred CeEEEEeccCCCCCCCCcc
Q 019076 303 DVFYVIDINYFPGYGKMPD 321 (346)
Q Consensus 303 ~~~~ViDVN~fPg~~gv~~ 321 (346)
++||+|||..||++...-
T Consensus 311 -~~~vlEINt~PG~t~~S~ 328 (372)
T 3tqt_A 311 -KVLVNEINTIPGFTNISM 328 (372)
T ss_dssp -CEEEEEEESSCCCSTTCH
T ss_pred -cEEEEEEECCCCcCccCH
Confidence 699999999999986543
No 17
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.83 E-value=2.5e-20 Score=197.27 Aligned_cols=234 Identities=16% Similarity=0.172 Sum_probs=156.6
Q ss_pred ccccCCcEEEEecCCCCCCCCC---CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccc
Q 019076 57 THTNKGISFVAIDQNRPLSDQG---PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNL 133 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~~q~---~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~ 133 (346)
.++++|++++.||++.++...+ .+|+++. ..+.-.++..++..+.||..+.++|++
T Consensus 436 aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~lL~~--- 494 (750)
T 3ln6_A 436 DVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKKILDE--- 494 (750)
T ss_dssp HHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHHHHHH---
T ss_pred HHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHHHHHH---
Confidence 3449999999999987655321 2333321 123556778899999999999999997
Q ss_pred cCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEe---Chhhhhc-------cCCCeEEE
Q 019076 134 SDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY---DRFSLSE-------LEPPMLLQ 203 (346)
Q Consensus 134 ~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~---~~~~L~~-------l~~p~v~Q 203 (346)
+|||+|++.++.+ .++..+. ....++||+|+||.. |+ .|.||.++. +.+++.+ ...++++|
T Consensus 495 ----~GIPvP~~~~~~~-~~ea~~~-~~~~~g~PvVVKP~~--G~-~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVE 565 (750)
T 3ln6_A 495 ----KHFPTPFGDEFTD-RKEALNY-FSQIQDKPIVVKPKS--TN-FGLGISIFKTSANLASYEKAIDIAFTEDSAILVE 565 (750)
T ss_dssp ----TTCCCCCCCCEET-TTTHHHH-HHHSSSSCEEEEETT--CC-SSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEE
T ss_pred ----CCcCCCCEEEECC-HHHHHHH-HHHhcCCcEEEEeCC--CC-CCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEE
Confidence 6999999998853 3333332 225689999999986 43 478999998 7777653 25789999
Q ss_pred ecccCCCeEEEEEEECCEEEEEEeecCCCcccch------hh--ccc----c-----------------------eeec-
Q 019076 204 EFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRE------LA--KVV----S-----------------------VFRF- 247 (346)
Q Consensus 204 EfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~------~~--~~~----g-----------------------~~~~- 247 (346)
|||+ |++++|+|+|++++.+.++-.+.+..+. +. .+. | -++.
T Consensus 566 efI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~ 643 (750)
T 3ln6_A 566 EYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVN 643 (750)
T ss_dssp ECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSS
T ss_pred eccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCcc
Confidence 9996 8999999999999875554434432110 00 000 0 0011
Q ss_pred --------------ccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEec------CcCCeEEE
Q 019076 248 --------------PRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREH------GMRDVFYV 307 (346)
Q Consensus 248 --------------~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~------~~g~~~~V 307 (346)
.|+|.++ .......+ ..+.++++|.++++++|+.+.|||+++++ ..++.++|
T Consensus 644 ~V~~~Ge~v~L~~~~Nls~Gg------~~~d~td~--i~p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~~~~~~~~i 715 (750)
T 3ln6_A 644 SIPPEGTKIELRRNSNISTGG------DSIDVTNT--MDPTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYSKDKKNATC 715 (750)
T ss_dssp CCCCTTCEEESCSSCCTTTTC------EEEECTTT--SCHHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCCTTTTCCEE
T ss_pred ccCCCCCEEEEeecccccCCC------ceeecccc--CCHHHHHHHHHHHHHhCCCeEEEEEEecCccccccccCCCeEE
Confidence 2222222 11110001 24568999999999999999999999974 11225899
Q ss_pred EeccCCCCCCCC--------cccHHHHHHHH
Q 019076 308 IDINYFPGYGKM--------PDYEHIFTDFL 330 (346)
Q Consensus 308 iDVN~fPg~~gv--------~~~~~~l~~~l 330 (346)
||||..||+.+. .+....++|+|
T Consensus 716 iEvN~~pg~~~h~~p~~g~~~~v~~~ii~~l 746 (750)
T 3ln6_A 716 IELNFNPLMYMHTYCQEGPGQSITPRILAKL 746 (750)
T ss_dssp EEEESSCCCHHHHSCSBSCCCCCHHHHHHHH
T ss_pred EEEcCCcchhhhcCcccCCCCcHHHHHHHHh
Confidence 999999998644 24556666655
No 18
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.83 E-value=2.4e-19 Score=171.71 Aligned_cols=207 Identities=15% Similarity=0.185 Sum_probs=144.7
Q ss_pred CCCccEEEEcccchhhH-HHHHHHHHhCCCeeeeC-hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC
Q 019076 77 QGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 154 (346)
Q Consensus 77 q~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VID-p~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~ 154 (346)
...+|+|+..+.+.... ..++...+. -|++++. ++.++..++||..+.+.|++ +||++|++..+.+..+
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~- 144 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQ-------AGVPVVPWVAVRKGEP- 144 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEEETTSC-
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEECchh-
Confidence 34689999988542110 234555543 4688875 49999999999999999997 5899999998864322
Q ss_pred hhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCC-eEEEEEEECCE---EE
Q 019076 155 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGG-ILFKIYIIGET---IK 223 (346)
Q Consensus 155 ~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G-~~~KV~VvG~~---v~ 223 (346)
+. . .++||+|+||..++ .|.++.++.++++|.+. +.++++||||+ | +++.|.|+|++ +.
T Consensus 145 --~~--~-~~g~PvvvKP~~g~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~ 214 (322)
T 2fb9_A 145 --PV--V-PFDPPFFVKPANTG---SSVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEAS 214 (322)
T ss_dssp --CC--C-CSCSCEEEEETTCC---TTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEE
T ss_pred --hh--h-ccCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEe
Confidence 11 1 68999999998744 36899999999887652 56899999995 7 99999999985 32
Q ss_pred EEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecC
Q 019076 224 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHG 300 (346)
Q Consensus 224 ~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~ 300 (346)
...+... ..++|+|......+.. ..++.+++. ..+.++++|.++.++||+ .++++|++++
T Consensus 215 ~~~ei~~----------~~~~~~~~~k~~~g~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~~~-- 277 (322)
T 2fb9_A 215 PVGEVRY----------EAPFYDYETKYTPGRAELLIPAPLDPG-----TQETVQELALKAYKVLGVRGMARVDFFLA-- 277 (322)
T ss_dssp EEEEEEE----------ECCEEETTTEEECCEEEEESSCCCCTT-----HHHHHHHHHHHHHHHHTCCSEEEEEEEEE--
T ss_pred eeEEEee----------CCCccCHHHcccCCCeEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEE--
Confidence 2211110 0123444332211110 112222211 245789999999999999 8999999997
Q ss_pred cCCeEEEEeccCCCCCCCCc
Q 019076 301 MRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 301 ~g~~~~ViDVN~fPg~~gv~ 320 (346)
+| ++||+|||..||+....
T Consensus 278 ~g-~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 278 EG-ELYLNELNTIPGFTPTS 296 (322)
T ss_dssp TT-EEEEEEEESSCCCSSSC
T ss_pred CC-cEEEEEEECCCCCCccc
Confidence 34 79999999999998654
No 19
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.83 E-value=5.8e-19 Score=171.99 Aligned_cols=210 Identities=12% Similarity=0.186 Sum_probs=144.2
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC---C
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS---L 153 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~---~ 153 (346)
.+|+++.=+.+.... ..++.+.+. -|++++.| +.++..++||..+.++|++ .||++|++.++.... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 169 (364)
T 3i12_A 98 TVDVIFPIVHGTLGEDGSLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRD-------AGLNIAPFITLTRTNRHAF 169 (364)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCBCCEEEEETTTGGGC
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHH-------CCCCCCCEEEEEccccchh
Confidence 579998776542211 246667655 57887764 7999999999999999996 589999999986432 1
Q ss_pred ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCE---EE
Q 019076 154 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET---IK 223 (346)
Q Consensus 154 ~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~---v~ 223 (346)
.+.+ ....++||+|+||..++ .|.++.++.+.++|... +.++++||||+ |+.+.|.|+|+. +.
T Consensus 170 ~~~~--~~~~lg~PvvVKP~~gg---ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~ 242 (364)
T 3i12_A 170 SFAE--VESRLGLPLFVKPANQG---SSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGNDNPQAS 242 (364)
T ss_dssp CHHH--HHHHHCSSEEEEETTCC---TTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEEE
T ss_pred hHHH--HHHhcCCCEEEEECCCC---CCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCCCceEe
Confidence 2322 23458899999998633 36899999999887642 57899999995 799999999876 12
Q ss_pred EEEeecCCCcccchhhcccceeeccccccccc---ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEec
Q 019076 224 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREH 299 (346)
Q Consensus 224 ~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~ 299 (346)
...+.. + ..++|+|......+. ...++.+++. ..+.++++|.++.++||+ .++++|++++.
T Consensus 243 ~~~ei~-~---------~~~~~~~~~ky~~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 243 TCGEIV-L---------NSEFYAYDTKYIDDNGAQVVVPAQIPSE-----VNDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEE-C---------CTTCC--TTTTSGGGGCEEESSCSSCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred eeEEEe-c---------CCCccCHHHcccCCCceEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 221111 1 123445544332211 1112222211 134689999999999999 47789999974
Q ss_pred CcCCeEEEEeccCCCCCCCCc
Q 019076 300 GMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 300 ~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+| ++|++|||..||+....
T Consensus 308 -~g-~~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 308 -DN-EVVINEINTLPGFTNIS 326 (364)
T ss_dssp -TC-CEEEEEEESSCCCSTTC
T ss_pred -CC-CEEEEEeeCCCCCCCCC
Confidence 34 69999999999998653
No 20
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.83 E-value=2e-19 Score=173.29 Aligned_cols=206 Identities=18% Similarity=0.256 Sum_probs=139.9
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|+|+..+.+... ...++...+. .+++++ .++.++..++||..+.+.|++ .+|++|++..+.+.. ...
T Consensus 90 ~~D~v~~~~~g~~ged~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~-~~~ 160 (343)
T 1e4e_A 90 HVDVAFSALHGKSGEDGSIQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKN-------AGIATPAFWVINKDD-RPV 160 (343)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCBCCCEEEECTTC-CCC
T ss_pred cCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------CCCCcCCEEEEechh-hhh
Confidence 46777766543210 1235555543 467876 679999999999999999997 589999999985432 221
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCE--EEE--E
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET--IKV--V 225 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~--v~~--~ 225 (346)
...++||+|+||..++ .|.+|.++.+.++|... +.++++||||+ |+++.|.|+|+. +.+ +
T Consensus 161 ----~~~~~~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~ 231 (343)
T 1e4e_A 161 ----AATFTYPVFVKPARSG---SSFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVVGEV 231 (343)
T ss_dssp ----GGGSCSCEEEEESSCC---TTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEECCC
T ss_pred ----hhccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCeEEeee
Confidence 1468999999999744 36789999999887642 57899999996 899999999764 211 1
Q ss_pred EeecCCCcccchhhcccceeecccccc----cccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEe
Q 019076 226 RRFSLPNVSKRELAKVVSVFRFPRVSS----AAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIRE 298 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~~~vs~----~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl~-lfGvDvi~~ 298 (346)
.+... ..++|+|..... .+.+. ..-|. .++ ..+.++++|.++.++||+. ++++|++++
T Consensus 232 ~ei~~----------~~~~~~~~~k~~~~~~~g~~~---~~~p~--~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~ 296 (343)
T 1e4e_A 232 DQIRL----------QYGIFRIHQEVEPEKGSENAV---ITVPA--DLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQ 296 (343)
T ss_dssp EEEEE----------SSSCCCGGGSSSGGGCCSSEE---ECSSC--SSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred EEEee----------CCCccCHhhcccccCCCCCee---EEeCC--CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEe
Confidence 11110 112344433221 11100 01111 122 1356899999999999994 889999997
Q ss_pred cCcCCeEEEEeccCCCCCCCC
Q 019076 299 HGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 299 ~~~g~~~~ViDVN~fPg~~gv 319 (346)
. +| ++||+|||..||+...
T Consensus 297 ~-~g-~~~viEiN~rpg~t~~ 315 (343)
T 1e4e_A 297 D-NG-RIVLNEVNTLPGFTSY 315 (343)
T ss_dssp T-TC-CEEEEEEESSCCCSTT
T ss_pred C-CC-CEEEEEeeCCCCCCcc
Confidence 4 34 6999999999999754
No 21
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.83 E-value=1.7e-19 Score=177.44 Aligned_cols=210 Identities=13% Similarity=0.198 Sum_probs=140.1
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC---C
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS---L 153 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~---~ 153 (346)
.+|+|+.=+.+.... ..++...+. -|++++ .++.++..++||..+.++|++ .|||+|++.++.... .
T Consensus 117 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 188 (386)
T 3e5n_A 117 QIDVVFPIVHGTLGEDGSLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRD-------ARLAVAPFVCFDRHTAAHA 188 (386)
T ss_dssp CCSEEEEEECSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHH-------TTCCBCCEEEEEHHHHTTC
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEEEeCcccchh
Confidence 578888776553221 246666655 567766 578999999999999999997 589999999985321 1
Q ss_pred ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEE-EE-
Q 019076 154 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETI-KV- 224 (346)
Q Consensus 154 ~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v-~~- 224 (346)
.+.+ ....++||+|+||..++| |.++.++.++++|... +.++++||||+ |+.+.|.|+|+.. .+
T Consensus 189 ~~~~--~~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~ 261 (386)
T 3e5n_A 189 DVDT--LIAQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA--GREIECAVLGNAVPHAS 261 (386)
T ss_dssp CHHH--HHHHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEECSSSCEEE
T ss_pred hHHH--HHHhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC--CeEEEEEEEeCCCceEE
Confidence 2222 234589999999986443 6889999999987642 56899999996 8999999998862 11
Q ss_pred -EEeecCCCcccchhhcccceeeccccccccc---ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEec
Q 019076 225 -VRRFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREH 299 (346)
Q Consensus 225 -~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~ 299 (346)
..+.. + ..++|+|......+. ...++.+++. ..+.++++|.++.++||+. ++++|++++.
T Consensus 262 ~~gei~-~---------~~~~~d~~~ky~~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~ 326 (386)
T 3e5n_A 262 VCGEVV-V---------HDAFYSYATKYISEHGAEIVIPADIDAQ-----TQQRIQQIAVQAYQALGCAGMARVDVFLCA 326 (386)
T ss_dssp EEEEEC-C--------------------------CEESSCSSCHH-----HHHHHHHHHHHHHHHHTCCSEEEEEEEECT
T ss_pred EeEEEE-e---------CCcccchhcccCCCCCeEEEECCCCCHH-----HHHHHHHHHHHHHHHhCCccEEEEEEEEEC
Confidence 11111 1 113445544322110 1112222211 1346899999999999997 7889999975
Q ss_pred CcCCeEEEEeccCCCCCCCCc
Q 019076 300 GMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 300 ~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+| ++|++|||..||+....
T Consensus 327 -dg-~~~vlEiN~~PG~t~~S 345 (386)
T 3e5n_A 327 -DG-RIVINEVNTLPGFTRIS 345 (386)
T ss_dssp -TC-CEEEEEEESSCCCSTTC
T ss_pred -CC-cEEEEEeECCCCCCccC
Confidence 34 69999999999987653
No 22
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.81 E-value=8.6e-19 Score=171.32 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=149.9
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC-Ch
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-SI 155 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~-~~ 155 (346)
.+|++|.-+.+.... ..++...+. -|++++ .++.++..++||..+.++|++ .||++|++.++..... +.
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 178 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKD-------LGIKTLDYVLLNEKNRANA 178 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHH-------HTCBCCCCEEECTTTGGGH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH-------CCcCCCCEEEEeCCchHHH
Confidence 478888776543211 235666654 578887 779999999999999999997 4899999998853221 12
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCC-eE---EEEEEECCEEEE
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGG-IL---FKIYIIGETIKV 224 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G-~~---~KV~VvG~~v~~ 224 (346)
. ....++||+|+||..++ .|.++.++.++++|.. .+.++++||||+ | ++ +.|.| ++++.+
T Consensus 179 ~---~~~~lg~PvvVKP~~g~---ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~--G~~E~svi~v~v-~g~~~~ 249 (367)
T 2pvp_A 179 L---DLMNFNFPFIVKPSNAG---SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ--GVKEYNLAGCKI-KKDFCF 249 (367)
T ss_dssp H---HHCCSCSCEEEEESSCC---TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT--TCEEEEEEEEEE-TTEEEE
T ss_pred H---HHhccCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC--CCceeeEEEEEE-CCEEEE
Confidence 1 13568999999998643 3688999999988764 256899999995 7 88 77888 887433
Q ss_pred -EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEecC
Q 019076 225 -VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHG 300 (346)
Q Consensus 225 -~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~ 300 (346)
..+.. +. .++|+|......+.+ ....|. .++ ..+.++++|.++.++||+. ++++|++++
T Consensus 250 ~~~ei~-~~---------~~~~d~~~ky~~g~~---~~~~Pa--~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~-- 312 (367)
T 2pvp_A 250 SYIEEP-NK---------QEFLDFKQKYLDFSR---NKAPKA--SLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-- 312 (367)
T ss_dssp EEEEET-TT---------TEEECCCCSSCCSCC---CSCCCC--CCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--
T ss_pred EEEEEe-cC---------CceEcccccccCCCe---eEEecC--CCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--
Confidence 22322 11 245565443322110 011121 122 1356899999999999985 889999997
Q ss_pred cCCeEEEEeccCCCCCCCCcccHHHHHHHHHHHHHh
Q 019076 301 MRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQS 336 (346)
Q Consensus 301 ~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~~i~~ 336 (346)
+| ++||+|||..||+.+..-++ -+.+.+.+++..
T Consensus 313 ~g-~~~vlEiN~rpg~t~~s~~p-~~~~l~~~li~~ 346 (367)
T 2pvp_A 313 EN-EVYLNEINPIPGSLANYLFD-DFKTTLENLAQS 346 (367)
T ss_dssp TT-EEEEEEEESSCGGGGGGGSS-SHHHHHHHHHHH
T ss_pred CC-eEEEEEEeCCCCCCcccccC-CHHHHHHHHHhC
Confidence 23 79999999999986433332 344444555444
No 23
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.80 E-value=5.7e-19 Score=172.90 Aligned_cols=215 Identities=16% Similarity=0.131 Sum_probs=144.4
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC-h
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-I 155 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~-~ 155 (346)
.+|+|+.=+.+... -..++.+.+. -|++++.| +.++..++||..|.++|++ +||++|+++++...... .
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 180 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAA-------DGLPVGAYAVLRPPRSTLH 180 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHH-------TTCCBCCEEEECTTCCCCC
T ss_pred CccEEEECCCCCCCccHHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHH-------cCcCCCCEEEEECcccchh
Confidence 58999877744211 1235666654 46888776 8999999999999999997 58999999998643321 1
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEE-----E
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETI-----K 223 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v-----~ 223 (346)
.+ ....++||+|+||..++ .|.++.++.++++|... +.++++||||+ |+.+.|.|+|+.- .
T Consensus 181 ~~--~~~~lg~PvvVKP~~gg---ss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~~~ 253 (373)
T 3lwb_A 181 RQ--ECERLGLPVFVKPARGG---SSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMPDGTLEAS 253 (373)
T ss_dssp HH--HHHHHCSCEEEEESBCS---TTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECTTSCEEEC
T ss_pred HH--HHHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECCCCceEEe
Confidence 12 24568999999998644 37889999999988642 57899999996 8999999998751 1
Q ss_pred EEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecC
Q 019076 224 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHG 300 (346)
Q Consensus 224 ~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~ 300 (346)
...+....... + ....+|+|......+.. ..++.+++. ..+.++++|.++.++||+ .++++|++++.
T Consensus 254 ~~~ei~~~~~~--~--~~~~~~d~~~ky~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 323 (373)
T 3lwb_A 254 TLGEIRVAGVR--G--REDSFYDFATKYLDDAAELDVPAKVDDQ-----VAEAIRQLAIRAFAAIDCRGLARVDFFLTD- 323 (373)
T ss_dssp CCEEEECCSTT--C--SEESSSCHHHHHTCTTCEEESSCCCCHH-----HHHHHHHHHHHHHHHTTCCSEEEEEEEEET-
T ss_pred eeeEEEccCCC--C--ccccccchhhcccCCCceEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCccEEEEEEEEEC-
Confidence 11111100000 0 00014444433221110 112222211 135689999999999999 58899999985
Q ss_pred cCCeEEEEeccCCCCCCCCc
Q 019076 301 MRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 301 ~g~~~~ViDVN~fPg~~gv~ 320 (346)
+| . ||+|||..||+....
T Consensus 324 dg-~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 324 DG-P-VINEINTMPGFTTIS 341 (373)
T ss_dssp TE-E-EEEEEESSCCCSTTS
T ss_pred CC-C-EEEEecCCCCCCccc
Confidence 34 6 999999999988644
No 24
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.79 E-value=5.5e-19 Score=186.87 Aligned_cols=247 Identities=14% Similarity=0.129 Sum_probs=158.3
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCCe-eeeChHHHHHHhcCHHHH
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV-TILDPPDAIKHLHNRQSM 124 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v-~VIDp~~ai~~l~dR~~~ 124 (346)
..+++.|+ ++||+++.|+++.++...+--|.+ .+. .++. ..-++..++..+.||..+
T Consensus 436 ~~Iv~~A~------~~gid~~vlg~e~~l~~lg~~~~~-~~i---------------g~~~~t~~~s~~aa~~~~DK~~t 493 (757)
T 3ln7_A 436 QALLFDVI------QKGIHTEILDENDQFLCLKYGDHI-EYV---------------KNGNMTSHDSYISPLIMENKVVT 493 (757)
T ss_dssp HHHHHHHH------HHTCEEEEEETTTTEEEEEETTEE-EEE---------------ETTTBCSSSBSHHHHHHHHSHHH
T ss_pred HHHHHHHH------HhCCCEEEECCCHHHHHhcccccc-eee---------------ccCccCCCCHHHHHHHhcCHHHH
Confidence 34555566 999999999998876432222221 111 1232 345788999999999999
Q ss_pred HHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEE----eChhhhhc-----
Q 019076 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA----YDRFSLSE----- 195 (346)
Q Consensus 125 ~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv----~~~~~L~~----- 195 (346)
.+.|.+ +|||+|++.++.+ .+++.+. ....++||+|+||.. |+ .|.||.++ .+.+++.+
T Consensus 494 k~lL~~-------~GIPvP~~~~~~~-~~ea~~~-~~~~~g~PvVVKP~~--g~-~G~GV~iv~~~v~~~eel~~al~~a 561 (757)
T 3ln7_A 494 KKVLQK-------AGFNVPQSVEFTS-LEKAVAS-YALFENRAVVIKPKS--TN-YGLGITIFQQGVQNREDFAKALEIA 561 (757)
T ss_dssp HHHHHH-------HTCCCCCEEEESC-HHHHHHG-GGGSSSSCEEEEESS--CS-TTTTCEECSSCCCCHHHHHHHHHHH
T ss_pred HHHHHH-------CCcCCCCEEEECC-HHHHHHH-HHHhcCCCEEEEeCC--CC-CCCCeEEecCCCCCHHHHHHHHHHH
Confidence 999997 5899999998852 2222121 124689999999986 33 47899998 78887754
Q ss_pred --cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhh--------ccc-------ce--------------
Q 019076 196 --LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA--------KVV-------SV-------------- 244 (346)
Q Consensus 196 --l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~--------~~~-------g~-------------- 244 (346)
.+..+++||||+ |++++|+|+|++++.+.++..+++..+... .|. +.
T Consensus 562 ~~~~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~ 639 (757)
T 3ln7_A 562 FREDKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQL 639 (757)
T ss_dssp HHHCSSEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHH
T ss_pred HhcCCcEEEEEcCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHH
Confidence 257899999994 899999999999987555543443211100 000 00
Q ss_pred ------eecccccccc---------cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecC------cCC
Q 019076 245 ------FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHG------MRD 303 (346)
Q Consensus 245 ------~~~~~vs~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~------~g~ 303 (346)
++..+|...| ..+.++..... +. ...+..+++|.++++++|+.+.||||++++- .+.
T Consensus 640 ~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dv-td-~i~p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~~~~ 717 (757)
T 3ln7_A 640 QLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDM-TD-EMHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNLT 717 (757)
T ss_dssp HHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEEC-TT-TSCHHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCSSTT
T ss_pred HHHHcCCCccccCCCCCEEEeecccccccCccceec-cc-cCCHHHHHHHHHHHHHhCCCEEEEEEEecCccccccccCC
Confidence 0111111111 01112221110 00 1246689999999999999999999999731 122
Q ss_pred eEEEEeccCCCCCCCC--------cccHHHHHHHH
Q 019076 304 VFYVIDINYFPGYGKM--------PDYEHIFTDFL 330 (346)
Q Consensus 304 ~~~ViDVN~fPg~~gv--------~~~~~~l~~~l 330 (346)
++.|||||..||+.+. .+....+.+++
T Consensus 718 ~~~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~l 752 (757)
T 3ln7_A 718 SWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKML 752 (757)
T ss_dssp TCEEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHH
T ss_pred CeEEEEEcCCcchhhhhccccCCCCchHHHHHHHh
Confidence 5799999999996644 24455666654
No 25
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.75 E-value=1.1e-17 Score=157.16 Aligned_cols=193 Identities=15% Similarity=0.167 Sum_probs=128.1
Q ss_pred CccEEEEcccch---hh--HHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC
Q 019076 79 PFDVVLHKLSGM---EW--CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 153 (346)
Q Consensus 79 ~fDvilhK~t~~---~~--~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~ 153 (346)
.+|+|+.+.... .+ ...+.+..+. .|++++|+++++..+.||..+.+.|. ++|++.++. +.+
T Consensus 79 ~~d~v~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~ 145 (316)
T 1gsa_A 79 DLDVILMRKDPPFDTEFIYATYILERAEE-KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKA 145 (316)
T ss_dssp GSSEEEECCCCCCCHHHHHHHHHHHHHHH-TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHH
T ss_pred cCCEEEEecCCCCchhhHHHHHHHHHHHH-cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHH
Confidence 378898877542 11 1233333334 46889999999999999988776542 899999884 222
Q ss_pred ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEe-Chhhhhc-------c-CCCeEEEecccCC-CeEEEEEEECCEEE
Q 019076 154 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY-DRFSLSE-------L-EPPMLLQEFVNHG-GILFKIYIIGETIK 223 (346)
Q Consensus 154 ~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~-~~~~L~~-------l-~~p~v~QEfI~h~-G~~~KV~VvG~~v~ 223 (346)
++.+.+. .++ |+|+||.. |+ +|+++.++. +.+++.. . ..++++||||+.. +.+++++++|+++.
T Consensus 146 ~~~~~~~--~~~-p~vvKP~~--g~-~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~ 219 (316)
T 1gsa_A 146 QLKAFWE--KHS-DIILKPLD--GM-GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPV 219 (316)
T ss_dssp HHHHHHH--HHS-SEEEECSS--CC-TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEEC
T ss_pred HHHHHHH--HcC-CEEEEECC--CC-CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEe
Confidence 2322222 245 99999987 43 578999998 7766543 2 3689999999853 79999999999975
Q ss_pred E--EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHH---hCCcEeEEEEEEe
Q 019076 224 V--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHR---LGLRLFNIDMIRE 298 (346)
Q Consensus 224 ~--~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~---lGl~lfGvDvi~~ 298 (346)
+ +.|.+.. +++..+ ++.++ ...|. ++ .+.++++|.+++++ +|+.++|+|++
T Consensus 220 ~~~~~r~~~~----~~~~~~--------~~~gg------~~~~~--~~--~~~~~~~a~~~~~~l~~~g~~~~~vD~~-- 275 (316)
T 1gsa_A 220 PYCLARIPQG----GETRGN--------LAAGG------RGEPR--PL--TESDWKIARQIGPTLKEKGLIFVGLDII-- 275 (316)
T ss_dssp SEEEEEECCS----SCSCCC--------GGGTC------EEEEE--EC--CHHHHHHHHHHHHHHHHTTCCEEEEEEE--
T ss_pred eeEEEEeCCC----CCceeE--------EccCC------ccccC--CC--CHHHHHHHHHHHHHHHhCCCcEEEEEec--
Confidence 3 4554321 122211 11111 11110 11 24578999999877 59999999998
Q ss_pred cCcCCeEEEEeccC-C-CCCCCC
Q 019076 299 HGMRDVFYVIDINY-F-PGYGKM 319 (346)
Q Consensus 299 ~~~g~~~~ViDVN~-f-Pg~~gv 319 (346)
| . ||+|||. + ||+..+
T Consensus 276 ---g-~-~~iEvN~r~~~~~~~~ 293 (316)
T 1gsa_A 276 ---G-D-RLTEINVTSPTCIREI 293 (316)
T ss_dssp ---T-T-EEEEEECSSCCCHHHH
T ss_pred ---C-C-EEEEEcCCCCcchHHH
Confidence 3 3 6999999 5 576543
No 26
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.69 E-value=2.6e-15 Score=146.87 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=152.5
Q ss_pred CcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCC---------------------CccEEEE
Q 019076 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQG---------------------PFDVVLH 85 (346)
Q Consensus 27 ~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~---------------------~fDvilh 85 (346)
+..+||..-.-. +...+...++ +.|++++.+|.+..-.... ..|+|..
T Consensus 13 ~~k~IlIlG~G~-----~g~~la~aa~------~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~ 81 (389)
T 3q2o_A 13 PGKTIGIIGGGQ-----LGRMMALAAK------EMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY 81 (389)
T ss_dssp TTSEEEEECCSH-----HHHHHHHHHH------HTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECCCH-----HHHHHHHHHH------HcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence 344666654432 2344566666 8999999999864221111 1233311
Q ss_pred cccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCC
Q 019076 86 KLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK 165 (346)
Q Consensus 86 K~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~ 165 (346)
-.. ......+ +.++++ ++ +-.+++++..+.||..+.+.|.+ .+|++|++..+.+ .+++.+. ...++
T Consensus 82 ~~e-~~~~~~~-~~l~~~-g~-~~~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~-~~~~~~~--~~~~g 147 (389)
T 3q2o_A 82 EFE-NIDYRCL-QWLEKH-AY-LPQGSQLLSKTQNRFTEKNAIEK-------AGLPVATYRLVQN-QEQLTEA--IAELS 147 (389)
T ss_dssp SCC-CCCHHHH-HHHHHH-SC-CTTCSHHHHHTTSHHHHHHHHHH-------TTCCCCCEEEESS-HHHHHHH--HHHHC
T ss_pred ccc-cccHHHH-HHHHhh-Cc-cCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEECC-HHHHHHH--HHhcC
Confidence 110 0111222 333333 23 66889999999999999999987 5899999998853 2223222 23578
Q ss_pred CcEEEecCcCCCCCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcccch
Q 019076 166 LPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRE 237 (346)
Q Consensus 166 fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~~~~ 237 (346)
||+|+||..+.| .+.+|.++.++++|.+. ..++++||||+ +++.+.|.++++ ++.+. |-. +
T Consensus 148 ~P~vvKp~~~~~--~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~-----~~~---e 216 (389)
T 3q2o_A 148 YPSVLKTTTGGY--DGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKVF-----PVA---E 216 (389)
T ss_dssp SSEEEEESSCCS--SSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEEC-----CCE---E
T ss_pred CCEEEEeCCCCC--CCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEEe-----cCe---e
Confidence 999999986332 36899999999998764 47999999997 459999999965 33221 100 0
Q ss_pred hhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 238 LAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 238 ~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
.....+.+.. ...+..+++. ..+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-
T Consensus 217 ~~~~~g~~~~--------~~~p~~l~~~-----~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg-~~~viEiNpR~~~ 281 (389)
T 3q2o_A 217 NIHVNNILHE--------SIVPARITEE-----LSQKAIAYAKVLADELELVGTLAVEMFATA-DG-EIYINELAPRPHN 281 (389)
T ss_dssp EEEETTEEEE--------EEESCSSCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCG
T ss_pred eEEcCCceEE--------EECCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-CEEEEEeeCCCCC
Confidence 0001122110 0011122211 1356899999999999996 8889999975 33 6999999999986
Q ss_pred CC
Q 019076 317 GK 318 (346)
Q Consensus 317 ~g 318 (346)
.+
T Consensus 282 s~ 283 (389)
T 3q2o_A 282 SG 283 (389)
T ss_dssp GG
T ss_pred ch
Confidence 63
No 27
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.69 E-value=2.4e-15 Score=146.35 Aligned_cols=218 Identities=13% Similarity=0.102 Sum_probs=141.4
Q ss_pred cCCcEEEEecCCCCC--CCC-------------------CCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHh
Q 019076 60 NKGISFVAIDQNRPL--SDQ-------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHL 118 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l--~~q-------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l 118 (346)
+.|++++.+|++..- ... ..+|+|+.-..+ .. ..+.+++++ -|+++.++++++..+
T Consensus 22 ~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~-~~-~~~~~~l~~-~gi~~~~~~~~~~~~ 98 (380)
T 3ax6_A 22 KMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEH-ID-VQTLKKLYN-EGYKIHPSPYTLEII 98 (380)
T ss_dssp HTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSC-SC-HHHHHHHHH-TTCEESSCHHHHHHH
T ss_pred HCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccC-CC-HHHHHHHHH-CCCeECCCHHHHHHh
Confidence 889999999985321 110 135666542211 11 223334444 467778999999999
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-C
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-E 197 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-~ 197 (346)
.||..+.+.|++ ++||+|++..+.+ .+ + ....++||+|+||..+. -.|.++.++.+.+++... +
T Consensus 99 ~dK~~~~~~l~~-------~gip~p~~~~~~~-~~---~--~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~~~el~~~~~ 163 (380)
T 3ax6_A 99 QDKFVQKEFLKK-------NGIPVPEYKLVKD-LE---S--DVREFGFPVVQKARKGG--YDGRGVFIIKNEKDLENAIK 163 (380)
T ss_dssp HSHHHHHHHHHH-------TTCCCCCEEECSS-HH---H--HHHTTCSSEEEEESCCC-------EEEECSGGGGGGCCC
T ss_pred cCHHHHHHHHHH-------cCCCCCCeEEeCC-HH---H--HHHhcCCCEEEEecCCC--CCCCCeEEECCHHHHHHHhc
Confidence 999999999997 5899999997742 11 2 23468999999998633 146899999999998764 4
Q ss_pred CCeEEEecccCCCeEEEEEEECC---EEEEEEe-ecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChH
Q 019076 198 PPMLLQEFVNHGGILFKIYIIGE---TIKVVRR-FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRP 273 (346)
Q Consensus 198 ~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R-~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~ 273 (346)
.++++||||+. |+++.|.++++ ++.+... ... +. ...+.++.. . .+..+++. ..+
T Consensus 164 ~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~~~~--~~-----~~~~~~~~~-------~-~p~~l~~~-----~~~ 222 (380)
T 3ax6_A 164 GETYLEEFVEI-EKELAVMVARNEKGEIACYPVVEMY--FD-----EDANICDTV-------I-APARIEEK-----YSK 222 (380)
T ss_dssp SSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEEEEC---------------CEE-------E-ESCSSCHH-----HHH
T ss_pred CCEEEEeccCC-CeeEEEEEEECCCCCEEEECCeeee--ec-----ccCCeeEEE-------E-CCCCCCHH-----HHH
Confidence 78999999963 89999999864 4443211 111 00 001111100 0 01112110 134
Q ss_pred HHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 274 LLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 274 ~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
.++++|.++.++||+ .++++|++.+. +| +++|+|||.-||..+
T Consensus 223 ~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g-~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 223 IAREIATSVVEALEGVGIFGIEMFLTK-QG-EILVNEIAPRPHNSG 266 (380)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEecCCCCCCc
Confidence 689999999999999 48899999975 34 699999999999754
No 28
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.65 E-value=1.6e-14 Score=141.03 Aligned_cols=223 Identities=15% Similarity=0.172 Sum_probs=145.3
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCCCC-C--------------------CCccEEEEcccchhhHHHHHHHHHhCCC
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPLSD-Q--------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPE 105 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~-q--------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~ 105 (346)
.+...++ +.|++++.+|++..-.. + ..+|+|..-... .....+....+. .
T Consensus 26 ~la~aa~------~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~-~~~~~l~~l~~~-~- 96 (377)
T 3orq_A 26 MMAQSAQ------KMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFEN-ISAQQLKLLCEK-Y- 96 (377)
T ss_dssp HHHHHHH------HTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTT-SCHHHHHHHHHH-S-
T ss_pred HHHHHHH------HCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccc-cCHHHHHHHhhh-c-
Confidence 4555666 89999999998542110 0 013444221111 112233333333 2
Q ss_pred eeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeE
Q 019076 106 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 185 (346)
Q Consensus 106 v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~ 185 (346)
.+..++++++.+.||..+.+.|.+ .+||+|++..+. +.+++.+. ...++||+|+||.. |.++|+++.
T Consensus 97 -~v~p~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~--gg~~g~Gv~ 163 (377)
T 3orq_A 97 -NIPQGYQAIQLLQDRLTEKETLKS-------AGTKVVPFISVK-ESTDIDKA--IETLGYPFIVKTRF--GGYDGKGQV 163 (377)
T ss_dssp -CCTTTTHHHHHHHSHHHHHHHHHH-------TTCCBCCEEEEC-SSTHHHHH--HHHTCSSEEEEESS--SCCTTTTEE
T ss_pred -CCCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEEC-CHHHHHHH--HHHcCCCEEEEeCC--CCCCCCCeE
Confidence 455788999999999999999987 589999999885 33333332 34589999999986 322578999
Q ss_pred EEeChhhhhcc-----CCCeEEEecccCCC-eEEEEEEE-C--CEEEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 186 LAYDRFSLSEL-----EPPMLLQEFVNHGG-ILFKIYII-G--ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 186 lv~~~~~L~~l-----~~p~v~QEfI~h~G-~~~KV~Vv-G--~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
++.+++++.+. ..++++||||+ | +.+.|.++ + +++.++ |-. +.....+.+.. .
T Consensus 164 ~v~~~~el~~a~~~~~~~~~ivEe~i~--g~~E~sv~~~~~~~g~~~~~-----~~~---e~~~~~g~~~~--------~ 225 (377)
T 3orq_A 164 LINNEKDLQEGFKLIETSECVAEKYLN--IKKEVSLTVTRGNNNQITFF-----PLQ---ENEHRNQILFK--------T 225 (377)
T ss_dssp EECSTTSHHHHHHHHTTSCEEEEECCC--EEEEEEEEEEECGGGCEEEC-----CCE---EEEEETTEEEE--------E
T ss_pred EECCHHHHHHHHHhcCCCcEEEEccCC--CCEEEEEEEEEeCCCCEEEE-----CCE---eEEEECCEEEE--------E
Confidence 99999888653 47899999996 6 89999999 3 233321 110 00001121110 0
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 257 ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 257 ~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
..++.+ +..+.++++|.++.++||+. +++||++++.+ | ++||+|||.-||-.|
T Consensus 226 ~~Pa~l-------~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~-g-~~~v~EinpR~~~sg 279 (377)
T 3orq_A 226 IVPARI-------DKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSN-N-QLYVNEIAPRPHNSG 279 (377)
T ss_dssp EESCSS-------CCHHHHHHHHHHHHTTSCCCEEEEEEEEEETT-C-CEEEEEEESSCCGGG
T ss_pred ECCCCC-------CHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCC-C-cEEEEEeeCCcCCCC
Confidence 001122 12567899999999999997 88999999842 3 699999999999443
No 29
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.65 E-value=2e-15 Score=148.95 Aligned_cols=183 Identities=14% Similarity=0.169 Sum_probs=125.7
Q ss_pred CeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEcc-CCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 105 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITK-DSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 105 ~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~-~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
++++..++++++.+.||..+.+.|.+ .|||+|++..+.. +.+++.+ ....++||+|+||.. |+..|.+
T Consensus 108 g~~v~p~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~--~~~~~g~P~VvKp~~--gg~~g~G 176 (403)
T 3k5i_A 108 EVKIEPSWQAIRTIQNKFNQKEHLRK-------YGIPMAEHRELVENTPAELAK--VGEQLGYPLMLKSKT--MAYDGRG 176 (403)
T ss_dssp TSEESSCHHHHHHHTSHHHHHHHHHT-------TTCCBCCEEEESSCCHHHHHH--HHHHHCSSEEEEESS--SCCTTTT
T ss_pred CCccCcCHHHHHHhcCHHHHHHHHHH-------CCcCCCCEEEEcCCCHHHHHH--HHHHhCCCEEEEeCC--CCcCCCC
Confidence 77889999999999999999999986 5899999998852 2222222 224588999999985 3224789
Q ss_pred eEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccC
Q 019076 184 LFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 258 (346)
Q Consensus 184 m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~ 258 (346)
+.++.+++++... ..++++||||+ +|+.+.|.++++.--+. ..|-. +.....+.+... ..
T Consensus 177 v~~v~~~~el~~a~~~~~~~~~lvEe~i~-~~~E~sv~v~~~~~g~~---~~p~~---~~~~~~g~~~~~--------~~ 241 (403)
T 3k5i_A 177 NFRVNSQDDIPEALEALKDRPLYAEKWAY-FKMELAVIVVKTKDEVL---SYPTV---ETVQEDSICKLV--------YA 241 (403)
T ss_dssp EEEECSTTSHHHHHHHTTTSCEEEEECCC-EEEEEEEEEEECSSCEE---ECCCE---EEEEETTEEEEE--------EE
T ss_pred EEEECCHHHHHHHHHhcCCCcEEEecCCC-CCeEEEEEEEEcCCCEE---EeCCe---eeEEeCCEEEEE--------Ee
Confidence 9999999887653 46899999996 37999999997631110 11111 000011211100 00
Q ss_pred CCC-CCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 259 DAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 259 ~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+.. +++. ..+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.|..
T Consensus 242 Pa~~l~~~-----~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg-~~~v~EiNpR~~~sg~~ 298 (403)
T 3k5i_A 242 PARNVSDA-----INQKAQELARKAVAAFDGKGVFGVEMFLLE-DD-SIMLCEIASRIHNSGHY 298 (403)
T ss_dssp SCSSCCHH-----HHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TS-CEEEEEEESSCCGGGTT
T ss_pred CCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-cEEEEEeecCCCCCCce
Confidence 111 2211 1346789999999999996 7789999975 33 69999999999987543
No 30
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.65 E-value=1.6e-14 Score=142.55 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=115.2
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
.++++++.++||..|-+.|++ +|||+|++..+.+ .+++ ....++||+|+||.. |+ .|.+|.++.+
T Consensus 102 ~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~-~~~~----~~~~~g~P~vvKp~~--g~-gs~Gv~~v~~ 166 (425)
T 3vot_A 102 LPFTTMENCRNKNKTRSILQQ-------NGLNTPVFHEFHT-LADL----ENRKLSYPLVVKPVN--GF-SSQGVVRVDD 166 (425)
T ss_dssp CCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEESS-GGGG----TTCCCCSSEEEEESC--C------CEEECS
T ss_pred CCHHHHHHhhCHHHHHHHHHH-------CCCCCCceeccCc-HHHH----HHhhcCCcEEEEECC--CC-CCCCceEech
Confidence 578999999999999999997 5899999998853 2222 335799999999986 43 6899999999
Q ss_pred hhhhhcc------------------CCCeEEEecccCCCeEEEE--EEECCEEEE--EEeecCCCcccchhhcccceeec
Q 019076 190 RFSLSEL------------------EPPMLLQEFVNHGGILFKI--YIIGETIKV--VRRFSLPNVSKRELAKVVSVFRF 247 (346)
Q Consensus 190 ~~~L~~l------------------~~p~v~QEfI~h~G~~~KV--~VvG~~v~~--~~R~Slp~~~~~~~~~~~g~~~~ 247 (346)
+++|.+. +.++++||||+ |..|-| ++.++++.+ +.++....- ... ..+..
T Consensus 167 ~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~~---~~~-~~~~~-- 238 (425)
T 3vot_A 167 RKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSKG---PFF-EEGVY-- 238 (425)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCCC---SBC-CCCEE--
T ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccCC---Ccc-ccceE--
Confidence 9887542 46799999995 777655 445666543 233221110 000 00000
Q ss_pred ccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCCCCCCcc
Q 019076 248 PRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPD 321 (346)
Q Consensus 248 ~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~ 321 (346)
..++.+++. ....+.++|.++.++||+ .++++|++.+. +| ++|++|||.-||-.+++.
T Consensus 239 ---------~~Pa~l~~~-----~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG-~~~~iEiN~R~gG~~~~~ 298 (425)
T 3vot_A 239 ---------IAPAQLKEE-----TRLAIVKEVTGAVSALGIHQGPAHTELRLDK-DG-TPYVIEVGARIGGSGVSH 298 (425)
T ss_dssp ---------EESCCCCHH-----HHHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TC-CEEEEEEESSCGGGGHHH
T ss_pred ---------eecccCCHH-----HHHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CC-cEEEEEEecCCCCCCchH
Confidence 001122211 134578999999999998 48889999975 34 699999999997655543
No 31
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.65 E-value=4.7e-15 Score=145.06 Aligned_cols=231 Identities=17% Similarity=0.184 Sum_probs=145.0
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCC---------------C---------CCCCccEEEEcccchhhHHHHHHHHHh
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPL---------------S---------DQGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l---------------~---------~q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
.+.+.++ +.|+.++.+|...+- . ....+|+|+.-..+ .....+.+..++
T Consensus 21 ~~~~a~~------~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~-~~~~~~a~~~~~ 93 (403)
T 4dim_A 21 GLYKAAK------ELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLD-TGIVSLARICDK 93 (403)
T ss_dssp HHHHHHH------HHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCS-TTHHHHHHHHHH
T ss_pred HHHHHHH------HCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcc-hhHHHHHHHHHH
Confidence 4556666 899999999753211 0 12357887754222 222334444333
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
-|+ +-+++++++.+.||..+.+.|.+ .+|++|++..+. +.+++.+ ....++||+|+||..+. +|.
T Consensus 94 -~gl-~g~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~-~~~~~~~--~~~~~g~P~vvKp~~g~---gg~ 158 (403)
T 4dim_A 94 -ENL-VGLNEEAAIMCGDKYKMKEAFKK-------YNVNTARHFVVR-NENELKN--ALENLKLPVIVKATDLQ---GSK 158 (403)
T ss_dssp -HTC-SSCCHHHHHHHHCHHHHHHHHHH-------HTCCCCCEECCC-SHHHHHH--HHHTSCSSEEEECSCC-------
T ss_pred -cCc-CCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEeC-CHHHHHH--HHhcCCCCEEEEECCCC---CCC
Confidence 344 46889999999999999999987 489999998764 2222222 23568999999998733 578
Q ss_pred eeEEEeChhhhhcc---------CCCeEEEecccCCCeEEE--EEEECCEEEEEEeecCCCcccchhhcccceeeccccc
Q 019076 183 ELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFK--IYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVS 251 (346)
Q Consensus 183 ~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~K--V~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs 251 (346)
+|.++.+.++|.+. ..++++||||+ |..|- +++.++++.+..... +... .+.+ ...
T Consensus 159 Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~e~sv~~~~~~g~~~~~~~~~--~~~~------~~~~---~~~ 225 (403)
T 4dim_A 159 GIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE--GYEFGAQAFVYKNDVLFVMPHG--DETY------MSHT---AVP 225 (403)
T ss_dssp -CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC--SEEEEEEEEEETTEEEEEEEEE--EEEE------ESSS---EEE
T ss_pred CEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC--CcEEEEEEEEECCEEEEEEEec--ceec------cCCC---Ccc
Confidence 99999999988653 36799999996 66554 455677766532110 0000 0000 000
Q ss_pred ccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 252 SAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~--lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
. + ...+..+++. ..+.+.++|.++.++||+. .+++|++.++ +++|++|||.-||-.+++.+
T Consensus 226 ~-~-~~~p~~l~~~-----~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~---~~~~~iEiN~R~~~~~~~~~ 288 (403)
T 4dim_A 226 V-G-HYVPLDVKDD-----IIEKTKTEVKKAIKALGLNNCAVNVDMILKD---NEVYIIELTGRVGANCLPEL 288 (403)
T ss_dssp E-E-EEESCCSCHH-----HHHHHHHHHHHHHHHHTCCSEEEEEEEEEET---TEEEEEEEESSCCSTTHHHH
T ss_pred e-e-EEeCCCCCHH-----HHHHHHHHHHHHHHHcCCCCCcEEEEEEEEC---CcEEEEEEcCCCCCCcHHHH
Confidence 0 0 0001112111 1356789999999999997 5789999973 37999999999997765543
No 32
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.64 E-value=5.5e-15 Score=142.86 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=136.9
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCC----------------------CCCccEEEEcccchhhHHHHHHHHHhC
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSD----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKH 103 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~----------------------q~~fDvilhK~t~~~~~~~l~~y~~~~ 103 (346)
.++...|+ +.|++++.+|.+..-.. ...+|+|+.-...... ..+.....+.
T Consensus 14 ~~~~~~Ak------~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~~~~~ 86 (363)
T 4ffl_A 14 FEAAYLSK------KAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLAC-IEFLNSIKEK 86 (363)
T ss_dssp HHHHHHHH------HTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHH-HHHHHHHGGG
T ss_pred HHHHHHHH------HCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhH-HHHHHHHHHH
Confidence 34566677 99999999998642111 0235666544333222 2233333455
Q ss_pred CCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 104 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 104 p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
.++++..++++++.+.||..+-+.|.+ ++||+|++. .++||+|+||.. |+ +|.+
T Consensus 87 ~~~~~g~~~~a~~~~~dK~~~k~~l~~-------~gip~~~~~----------------~ig~P~vvKp~~--g~-g~~g 140 (363)
T 4ffl_A 87 FSCPVLFDFEAYRISRDKKKSKDYFKS-------IGVPTPQDR----------------PSKPPYFVKPPC--ES-SSVG 140 (363)
T ss_dssp CSSCBCCCHHHHHHHTSHHHHHHHHHH-------TTCCCCCBS----------------CSSSCEEEECSS--CC-TTTT
T ss_pred CCCccCCCHHHHHHhhCHHHHHHHHHh-------cCCCCCCce----------------ecCCCEEEEECC--CC-CCcC
Confidence 678888999999999999999999997 578888642 368999999986 33 5789
Q ss_pred eEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCE--EEEE--EeecCCCcccchhhcccceeecccccccccccCC
Q 019076 184 LFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGET--IKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 184 m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~--v~~~--~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
|.++.+.+++......+++|||| .|..+-|.++++. ..+. .+...++ ...+ +
T Consensus 141 v~~v~~~~~~~~~~~~~~~ee~i--~g~e~sv~~~~d~~~~~~~~~~~~~~~~----------------~~~~-~----- 196 (363)
T 4ffl_A 141 ARIIYDDKDLEGLEPDTLVEEYV--EGEVVSLEVVGDGSHFAVVKETLVHIDE----------------TYDC-H----- 196 (363)
T ss_dssp CEEEC------CCCTTCEEEECC--CSEEEEEEEEEESSCEEECCCEEEEECT----------------TSCE-E-----
T ss_pred eEEeccHHHhhhhccchhhhhhc--cCcEEEEEEEEECCeEEEEEEEEeccCC----------------cccc-e-----
Confidence 99999999999999999999999 4888988888543 2221 1111000 0000 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccC-CCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINY-FPGY 316 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~-fPg~ 316 (346)
.. .+.+..+.++++|.++.++||+. ++++|++.+. +++||+|||. |||.
T Consensus 197 -~~----~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~---~~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 197 -MV----TPLPANPLFRQISHDLAANLPLKGIMDVEAIFGP---KGLRVIEIDARFPSQ 247 (363)
T ss_dssp -EE----EECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEET---TEEEEEEEECSCCSS
T ss_pred -ee----cchhHHHHHHHHHHHHHHhCCccceeeeeeEEeC---CeEEEEEEeCCCCCC
Confidence 00 11223466899999999999986 6679999975 3699999999 7874
No 33
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.64 E-value=8.8e-15 Score=141.76 Aligned_cols=218 Identities=11% Similarity=0.058 Sum_probs=141.6
Q ss_pred cCCcEEEEecCCCCC--CCC------------------CCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhc
Q 019076 60 NKGISFVAIDQNRPL--SDQ------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLH 119 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l--~~q------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~ 119 (346)
+.|++++.+|++..- ... ..+|+|+.-.... ....++ ..++. | ++.+++++++.+.
T Consensus 20 ~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~~~~-~l~~~-g-~~g~~~~~~~~~~ 95 (369)
T 3aw8_A 20 PLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENV-PVEAAR-RLEGR-L-PLYPPAKALEVAQ 95 (369)
T ss_dssp TBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTC-CHHHHH-HHHHH-S-CBSSCHHHHHHHT
T ss_pred HcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCc-CHHHHH-HHHHc-C-CcCCCHHHHHHhc
Confidence 889998888875321 110 2467776544332 223333 33332 4 6788999999999
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||..+.+.|++ .+||+|++..+. +.+++.+ ....++||+|+||..+. -+|.++.++.+++++.+.
T Consensus 96 dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~~--~~~~~g~P~vvKp~~~~--~~g~Gv~~v~~~~el~~~~~~ 163 (369)
T 3aw8_A 96 DRLREKTFFQG-------LGVPTPPFHPVD-GPEDLEE--GLKRVGLPALLKTRRGG--YDGKGQALVRTEEEALEALKA 163 (369)
T ss_dssp CHHHHHHHHHH-------HTCCCCCEEEES-SHHHHHH--HHTTTCSSEEEEECCC--------EEEECSHHHHHHHHTT
T ss_pred CHHHHHHHHHH-------CCCCCCCceeeC-CHHHHHH--HHHHcCCCEEEEEcCCC--CCcceEEEECCHHHHHHHHHh
Confidence 99999999997 489999999885 2222222 23468999999998643 136789999999887653
Q ss_pred --CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCC
Q 019076 197 --EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELP 270 (346)
Q Consensus 197 --~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p 270 (346)
..++++||||+. |+.+.|.++++ ++.+..+. .+ .. ..+.++.+ . .+.. +++.
T Consensus 164 ~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~--~~-----~~-~~~~~~~~-------~-~p~~~l~~~----- 221 (369)
T 3aw8_A 164 LGGRGLILEGFVPF-DREVSLLAVRGRTGEVAFYPLV--EN-----RH-WGGILRLS-------L-APAPGASEA----- 221 (369)
T ss_dssp TCSSSEEEEECCCC-SEEEEEEEEECTTSCEEECCCE--EE-----EE-ETTEEEEE-------E-ESCTTCCHH-----
T ss_pred cCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEEECCe--ee-----ee-eCCEEEEE-------E-CCCCCCCHH-----
Confidence 468999999963 89999999974 44331110 00 00 01111110 0 0111 2110
Q ss_pred ChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 271 PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 271 ~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
..+.++++|.++.++||+. ++++|++.+. | +++++|||.-||..+
T Consensus 222 ~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~~~ 267 (369)
T 3aw8_A 222 LQKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHNSG 267 (369)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCCcc
Confidence 1346799999999999996 7889999975 3 799999999998754
No 34
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.63 E-value=3.3e-15 Score=142.18 Aligned_cols=181 Identities=16% Similarity=0.186 Sum_probs=122.8
Q ss_pred CCccEEEEcccchh-hHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 78 GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 78 ~~fDvilhK~t~~~-~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.++|+++.-..+.. ..+.+.+..+ .++..+.+++++++.+.||..+.+.|+ . +|++|++++
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~-~~g~~~g~~~~~~~~~~dK~~~~~~l~-------~-Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAE-KYCENLGSSSRAIAVTSDKWELYKKLR-------G-EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHH-TTSEESSCCHHHHHHHTSHHHHHHHHT-------T-TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHH-hcCCccCCCHHHHHHhcCHHHHHHHHH-------h-CCCCCCEec---------
Confidence 47898777644332 2233334443 367889999999999999999999988 4 899999884
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECC-EEEEEEeecCCCccc
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGE-TIKVVRRFSLPNVSK 235 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~-~v~~~~R~Slp~~~~ 235 (346)
..++||+|+||..++ +|.++.++.+ ...++++||||+ |+++.|.++++ .+..+.+.. .+
T Consensus 130 -----~~~~~P~vvKP~~g~---gs~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~--~~-- 189 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTAC---AGEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNE--QI-- 189 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEE--EE--
T ss_pred -----ccCCCCEEEEeCCCC---CCCCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEee--Ee--
Confidence 147899999999743 5788888887 567899999996 99999999954 343322110 00
Q ss_pred chhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh-CC-cEeEEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GL-RLFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl-~lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
... +.+.. + ..+..+++ +..+.++++|.++.++| |+ .++|+|++.+ | ++|++|||.-
T Consensus 190 ---~~~---~~~~g----~--~~p~~l~~-----~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~-~~~viEiNpR 248 (305)
T 3df7_A 190 ---INN---FRYAG----A--VVPARISD-----EVKREVVEEAVRAVECVEGLNGYVGVDIVYS---D-QPYVIEINAR 248 (305)
T ss_dssp ---EET---TEEEE----E--EESCCCCH-----HHHHHHHHHHHHHHTTSTTCCEEEEEEEEES---S-SEEEEEEESS
T ss_pred ---ccC---ceecc----c--cccCCCCH-----HHHHHHHHHHHHHHHHcCCCcCceEEEEEEC---C-CEEEEEEcCC
Confidence 000 11100 0 00112211 12357899999999999 95 5788999984 3 5899999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
||..
T Consensus 249 ~~~~ 252 (305)
T 3df7_A 249 LTTP 252 (305)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 9974
No 35
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.62 E-value=6.6e-15 Score=143.27 Aligned_cols=227 Identities=11% Similarity=0.142 Sum_probs=145.5
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCC--------------C---------CCCccEEEEcccchhhHHHHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLS--------------D---------QGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~--------------~---------q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
..+...++ +.|++++.+|.+..-. + +..+|+|+.-.-. ...+ +.+..++
T Consensus 24 ~~~~~a~~------~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~-~~~~-~~~~l~~ 95 (391)
T 1kjq_A 24 KEVAIECQ------RLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEA-IATD-MLIQLEE 95 (391)
T ss_dssp HHHHHHHH------TTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSC-SCHH-HHHHHHH
T ss_pred HHHHHHHH------HcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCc-CCHH-HHHHHHh
Confidence 34555566 8999999999753111 0 1246777653321 1122 2233333
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L-~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|+.+.+++++++.+.||..+.+.| ++ .+||+|++..+. +.+++.+. ...++||+|+||.. |+ +|
T Consensus 96 -~gi~~~~~~~~~~~~~dK~~~~~~l~~~-------~gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~--g~-gg 161 (391)
T 1kjq_A 96 -EGLNVVPCARATKLTMNREGIRRLAAEE-------LQLPTSTYRFAD-SESLFREA--VADIGYPCIVKPVM--SS-SG 161 (391)
T ss_dssp -TTCEESSCHHHHHHHHSHHHHHHHHHTT-------SCCCBCCEEEES-SHHHHHHH--HHHHCSSEEEEESC--C----
T ss_pred -CCCCcCCCHHHHHHhhCHHHHHHHHHHh-------CCCCCCCeeeeC-CHHHHHHH--HHhcCCCEEEEeCC--CC-CC
Confidence 4677889999999999999999998 54 589999999875 22223222 23478999999985 33 57
Q ss_pred eeeEEEeChhhhhcc-----------CCCeEEEecccCCCeEEEEEEECC--EEEEEEeecCCCcccchhhcccceeecc
Q 019076 182 HELFLAYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKRELAKVVSVFRFP 248 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~VvG~--~v~~~~R~Slp~~~~~~~~~~~g~~~~~ 248 (346)
.+|.++.+.+++... ..++++||||+. |.++.|.++++ .+... +.. +... ..+.+ .
T Consensus 162 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~~~-----~~~--~~~~-~~~~~--~ 230 (391)
T 1kjq_A 162 KGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVHFC-----APV--GHRQ-EDGDY--R 230 (391)
T ss_dssp CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEEEC-----CCE--EEEE-ETTEE--E
T ss_pred CCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeEEc-----cCc--ceEE-ECCEE--E
Confidence 899999999887542 468999999974 89999988843 32211 100 0000 00111 0
Q ss_pred cccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 249 RVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 249 ~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.. . .+..+++. ..+.+.++|.++.++||+ .++++|++.+.+ ++||+|||.-||-.+.
T Consensus 231 ~~-----~-~p~~l~~~-----~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 231 ES-----W-QPQQMSPL-----ALERAQEIARKVVLALGGYGLFGVELFVCGD---EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp EE-----E-ECCCCCHH-----HHHHHHHHHHHHHHHHCSSEEEEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred EE-----E-eCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEECCCCCCcc
Confidence 00 0 01112110 134688999999999999 778899999753 6999999999996544
No 36
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.62 E-value=1.6e-15 Score=146.54 Aligned_cols=218 Identities=13% Similarity=0.145 Sum_probs=124.9
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCCC-----CC-----------CCccEEEEcccchhhHHHHHHHHHhCCCeeeeC
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPLS-----DQ-----------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 110 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l~-----~q-----------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VID 110 (346)
.+...++ +.|++++.+|.+.... +. ..+|+|+....+.. .. +.+.++. ++.+
T Consensus 15 ~~~~a~~------~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~-~~-~~~~l~~----~~g~ 82 (365)
T 2z04_A 15 MTILEGR------KLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIK-DE-VLEKCES----KLIP 82 (365)
T ss_dssp HHHHHHG------GGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCC-HH-HHHHHTT----TBSS
T ss_pred HHHHHHH------HCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCc-HH-HHHHHhh----hcCC
Confidence 3455555 8999999999864221 10 23688887653322 22 3333322 6778
Q ss_pred hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeCh
Q 019076 111 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 190 (346)
Q Consensus 111 p~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~ 190 (346)
++++++.+.||..+.+.|++ ++|++|++..+. .+++.+. ...++||+|+||..+. -.|.++.++.+.
T Consensus 83 ~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~--~~~~~~~--~~~~~~P~vvKp~~~~--~~g~Gv~~v~~~ 149 (365)
T 2z04_A 83 NPQALYVKKSRIREKLFLKK-------HGFPVPEFLVIK--RDEIIDA--LKSFKLPVVIKAEKLG--YDGKGQYRIKKL 149 (365)
T ss_dssp CTHHHHHHTCHHHHHHHHHT-------TTCCCCCEEEC------------------CEEEECC-----------------
T ss_pred CHHHHHHhhCHHHHHHHHHH-------cCCCCCCEEEEc--HHHHHHH--HHhcCCCEEEEEcCCC--cCCCCeEEECCH
Confidence 99999999999999999986 589999999875 3233222 2457899999998643 135789999999
Q ss_pred hhhhcc------CCCeEEEecccCCCeEEEEEEECC---EEEEE--EeecCCCcccchhhcccceeecccccccccccCC
Q 019076 191 FSLSEL------EPPMLLQEFVNHGGILFKIYIIGE---TIKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 191 ~~L~~l------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
+++.+. ..++++||||+. |+++.|.++++ ++.+. .+. +. ..+.++.
T Consensus 150 ~el~~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~~~---------~~-~~~~~~~------------ 206 (365)
T 2z04_A 150 EDANQVVKNHDKEESFIIEEFVKF-EAEISCIGVRDREGKTYFYPQPFN---------KH-EEGILIY------------ 206 (365)
T ss_dssp ---------------CEEEECCCC-SEEEEEEEEECTTCCEEECCEEEE---------EE-ETTEEEE------------
T ss_pred HHHHHHHHHhccCCCEEEEccCCC-CEEEEEEEEECCCCCEEEECCEEE---------EE-eCCEeEE------------
Confidence 887653 368999999974 89999999953 44321 111 00 0111111
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
...|. .+ .+.++++|.++.++||+. ++++|++.+. +| +++++|||.-||..+.
T Consensus 207 -~~~p~--~~--~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g-~~~~iEiN~R~~~~~~ 260 (365)
T 2z04_A 207 -NYVPY--AK--LKEAEEITKRLMELLDIVGVFTVEFFLLK-DG-RVLINEFAPRVHNTGH 260 (365)
T ss_dssp -EEEEE--EC--CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGGGT
T ss_pred -EECCH--hH--HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CC-cEEEEEeccCcCCCce
Confidence 00110 01 456899999999999995 7889999974 34 6999999999987544
No 37
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.61 E-value=8.9e-15 Score=144.79 Aligned_cols=228 Identities=13% Similarity=0.174 Sum_probs=143.5
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCC--------------CC---------CCCccEEEEcccchhhHHHHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPL--------------SD---------QGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l--------------~~---------q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
..+...++ ++|++++.+|.+..- .+ +..+|+|+.-... .... +.+..++
T Consensus 32 ~~~~~a~~------~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~-~~~~-~~~~l~~ 103 (433)
T 2dwc_A 32 KEIAIEAQ------RLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEA-INLD-ALFEFEK 103 (433)
T ss_dssp HHHHHHHH------HTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSC-SCHH-HHHHHHH
T ss_pred HHHHHHHH------HCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECccc-CCHH-HHHHHHh
Confidence 34455566 899999999875311 00 1257888765432 1122 2233333
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L-~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|+++.+++++++.+.||..+.+.| ++ .+||+|++..+.+ .+++.+. ...++||+|+||.. |+ +|
T Consensus 104 -~gi~~~~~~~~~~~~~dK~~~k~~l~~~-------~gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~--g~-gg 169 (433)
T 2dwc_A 104 -DGYFVVPNARATWIAMHRERLRETLVKE-------AKVPTSRYMYATT-LDELYEA--CEKIGYPCHTKAIM--SS-SG 169 (433)
T ss_dssp -TTCCBSSCHHHHHHHHCHHHHHHHHHHT-------SCCCCCCEEEESS-HHHHHHH--HHHHCSSEEEEECC--C----
T ss_pred -cCCeeCCCHHHHHHhhCHHHHHHHHHHh-------cCCCCCCeeEeCC-HHHHHHH--HHhcCCCEEEEECC--Cc-CC
Confidence 4667789999999999999999998 65 5899999998752 2223222 23478999999985 33 67
Q ss_pred eeeEEEeChhhhhcc-----------CCCeEEEecccCCCeEEEEEEEC-----CEE-EEEEeecCCCcccchhhcccce
Q 019076 182 HELFLAYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIG-----ETI-KVVRRFSLPNVSKRELAKVVSV 244 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~VvG-----~~v-~~~~R~Slp~~~~~~~~~~~g~ 244 (346)
.+|.++.++++|... ..++++||||+. |.++.|.+++ +++ ..+. ....+. . ..+.
T Consensus 170 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~~~G~~~~~~~-~~~~~~-----~-~~~~ 241 (433)
T 2dwc_A 170 KGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVRHFDENGEIVTTFP-KPVGHY-----Q-IDGD 241 (433)
T ss_dssp ---EEECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEEEECTTSCEEEEEE-CCEEEE-----E-SSSS
T ss_pred CCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEecccCCCCEeEEEe-cccceE-----E-EcCE
Confidence 899999999887542 368999999974 8999998873 332 2111 110000 0 0011
Q ss_pred eecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 245 FRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 245 ~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
+. .. . .+..+++. ..+.+.++|.++.++||+ .++++|++++.+ ++||+|||.-||-.+.
T Consensus 242 ~~--~~-----~-~p~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 242 YH--AS-----W-QPAEISEK-----AEREVYRIAKRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHDTGM 301 (433)
T ss_dssp EE--EE-----E-ESCCCCHH-----HHHHHHHHHHHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred EE--EE-----E-cCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCCCcc
Confidence 10 00 0 01112110 134689999999999999 677899999753 6999999999997654
No 38
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.61 E-value=2.3e-14 Score=142.23 Aligned_cols=240 Identities=12% Similarity=0.100 Sum_probs=153.1
Q ss_pred CcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCC-----C---CC-------------CccEEEE
Q 019076 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLS-----D---QG-------------PFDVVLH 85 (346)
Q Consensus 27 ~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~-----~---q~-------------~fDvilh 85 (346)
+..+||..-.-. +...+...++ +.|++++.+|.+..-. + .. .+|+|+.
T Consensus 34 ~~~~IlIlG~G~-----lg~~~~~aa~------~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~ 102 (419)
T 4e4t_A 34 PGAWLGMVGGGQ-----LGRMFCFAAQ------SMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST 102 (419)
T ss_dssp TTCEEEEECCSH-----HHHHHHHHHH------HTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCH-----HHHHHHHHHH------HCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 344555554321 2344566666 9999999999753110 0 01 2567663
Q ss_pred cccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhC--
Q 019076 86 KLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAG-- 163 (346)
Q Consensus 86 K~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~-- 163 (346)
-... .. ..+.+++++. .++..++++++.+.||..+.+.|.+ .|||+|++..+.+ .+++.+. ...
T Consensus 103 ~~e~-~~-~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~v~~-~~e~~~~--~~~~~ 168 (419)
T 4e4t_A 103 EFEN-VP-AASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEA-------SGVPVAPHVVIES-AAALAAL--DDAAL 168 (419)
T ss_dssp CCTT-CC-HHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHH-------TTCCBCCEEEECS-HHHHHTS--CHHHH
T ss_pred ccCc-CC-HHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHH-------cCcCCCCeEEECC-HHHHHHH--HHhhc
Confidence 2211 12 2233344444 4788999999999999999999987 5899999998852 2222221 123
Q ss_pred --CCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCc
Q 019076 164 --LKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNV 233 (346)
Q Consensus 164 --l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~ 233 (346)
+ ||+|+||.. .|+ .+.++.++.+++++... ..++++||||+. ++.+.|.++++ .+.++ |-.
T Consensus 169 ~~~-~P~VvKp~~-~g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~~-----~~~ 239 (419)
T 4e4t_A 169 DAV-LPGILKTAR-LGY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAAF-----PLA 239 (419)
T ss_dssp HTT-CSEEEEESS-SCC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEEC-----CCE
T ss_pred ccc-CCEEEEecC-CCC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEEE-----eCe
Confidence 7 999999972 244 67899999999988653 468999999973 78899999853 22221 100
Q ss_pred ccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEecc
Q 019076 234 SKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDIN 311 (346)
Q Consensus 234 ~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN 311 (346)
+.....+.+... . .+.. +++. ..+.++++|.++.++||+. +++||++++. +| ++||+|||
T Consensus 240 ---e~~~~~g~~~~~-------~-~Pa~~l~~~-----~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG-~~~v~EiN 301 (419)
T 4e4t_A 240 ---QNVHHNGILALT-------I-VPAPAADTA-----RVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DG-SFVANEMA 301 (419)
T ss_dssp ---EEEEETTEEEEE-------E-ESCTTCCHH-----HHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TC-CEEEEEEE
T ss_pred ---EEEeeCCeEEEE-------E-cCCCCCCHH-----HHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CC-CEEEEEEe
Confidence 000011211110 0 0111 2211 1356889999999999996 7889999975 34 69999999
Q ss_pred CCCCCCC
Q 019076 312 YFPGYGK 318 (346)
Q Consensus 312 ~fPg~~g 318 (346)
.-||-.+
T Consensus 302 pR~~~sg 308 (419)
T 4e4t_A 302 PRPHNSG 308 (419)
T ss_dssp SSCCGGG
T ss_pred CCCCCCC
Confidence 9999654
No 39
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.60 E-value=3.4e-14 Score=138.30 Aligned_cols=223 Identities=8% Similarity=-0.003 Sum_probs=147.7
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCC--CCCCC-CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHH
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRP--LSDQG-PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQS 123 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~--l~~q~-~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~ 123 (346)
.+...|+ +.|+++ +|++.. -.-.+ .+|+|..-... .....+... ++. + .|..+++++..+.||..
T Consensus 15 m~~~aa~------~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~-v~~~~l~~l-~~~-~-~v~p~~~a~~~~~DK~~ 82 (355)
T 3eth_A 15 MLRQAGE------PLGIAV--WPVGLDAEPAAVPFQQSVITAEIER-WPETALTRQ-LAR-H-PAFVNRDVFPIIADRLT 82 (355)
T ss_dssp HHHHHHG------GGTCEE--EEECTTCCGGGCCCTTSEEEESCSC-CCCCHHHHH-HHT-C-TTBTTTTHHHHHHSHHH
T ss_pred HHHHHHH------HCCCEE--ECCCCCCCceEEcccCCEEEECcCC-cCHHHHHHH-Hhc-C-CcCCCHHHHHHhcCHHH
Confidence 4455566 999999 565432 11111 56777665432 222333333 333 3 78899999999999999
Q ss_pred HHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC--hhhhhc--cCCC
Q 019076 124 MLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD--RFSLSE--LEPP 199 (346)
Q Consensus 124 ~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~--~~~L~~--l~~p 199 (346)
+-+.|.+ .+||+|++..+. +.+++.+. ...++||+|+||.. .|+ .++++.++.+ +++|.+ +. +
T Consensus 83 ~k~~l~~-------~GIptp~~~~v~-~~~e~~~~--~~~~G~P~VvKp~~-~G~-~GkGv~~v~~~~~~el~~a~~~-~ 149 (355)
T 3eth_A 83 QKQLFDK-------LHLPTAPWQLLA-ERSEWPAV--FDRLGELAIVKRRT-GGY-DGRGQWRLRANETEQLPAECYG-E 149 (355)
T ss_dssp HHHHHHH-------TTCCBCCEEEEC-CGGGHHHH--HHHHCSEEEEEESS-SCC-TTTTEEEEETTCGGGSCGGGTT-T
T ss_pred HHHHHHH-------CccCCCCEEEEC-CHHHHHHH--HHHcCCCEEEEecC-CCC-CCCeEEEEcCCCHHHHHHHhhC-C
Confidence 9999987 589999999885 33333332 24589999999985 234 6799999999 888765 24 7
Q ss_pred eEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHH
Q 019076 200 MLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLE 276 (346)
Q Consensus 200 ~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~ 276 (346)
+++||||+ .++.+-|.++++ .+.+ .|-. +.....+.+.+.. .+..+++. ..+.++
T Consensus 150 vivEe~I~-~~~Eisv~v~~~~~G~~~~-----~p~~---e~~~~~g~~~~~~--------~pa~l~~~-----~~~~~~ 207 (355)
T 3eth_A 150 CIVEQGIN-FSGEVSLVGARGFDGSTVF-----YPLT---HNLHQDGILRTSV--------AFPQANAQ-----QQARAE 207 (355)
T ss_dssp EEEEECCC-CSEEEEEEEEECTTSCEEE-----CCCE---EEEEETTEEEEEE--------ECSSCCHH-----HHHHHH
T ss_pred EEEEEccC-CCcEEEEEEEEcCCCCEEE-----ECCE---EEEeeCCeEEEEE--------CCCCCCHH-----HHHHHH
Confidence 99999997 478999999843 3332 1110 0000112222110 01122211 135689
Q ss_pred HHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 277 RLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 277 ~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
++|.++.++||.. ++++|++++. +++||+|||.-|+-.|.
T Consensus 208 ~~a~~i~~aLg~~G~~~vEf~~~~---~~~~v~EinpR~~~sg~ 248 (355)
T 3eth_A 208 EMLSAIMQELGYVGVMAMECFVTP---QGLLINELAPRVHNSGH 248 (355)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEEET---TEEEEEEEESSCCGGGT
T ss_pred HHHHHHHHHCCCeeEEEEEEEEEC---CcEEEEEeeCCCCCCcc
Confidence 9999999999985 7889999974 26999999999997554
No 40
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.56 E-value=2.2e-14 Score=136.31 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=101.9
Q ss_pred CCee-eeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 104 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 104 p~v~-VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
.|++ +.++++++..+.||..+.+.|.+ .+|++|+++.. .+++.+.+....++||+|+||..+. +|.
T Consensus 97 ~g~~~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~---~~~~~~~~~~~~~~~P~vvKp~~g~---g~~ 163 (331)
T 2pn1_A 97 IGVTVIVSPYAACELCFDKYTMYEYCLR-------QGIAHARTYAT---MASFEEALAAGEVQLPVFVKPRNGS---ASI 163 (331)
T ss_dssp TTCEECCCCHHHHHHHHBHHHHHHHHHH-------HTCCCCCEESS---HHHHHHHHHTTSSCSCEEEEESBC-------
T ss_pred CCcEEecCCHHHHHHhhCHHHHHHHHHH-------cCCCCCcEEec---HHHhhhhhhcccCCCCEEEEeCCCC---CCC
Confidence 4675 46889999999999999999997 48999998742 1122222212468999999998743 478
Q ss_pred eeEEEeChhhhhcc---CCCeEEEecccCCCeEEEEEEEC----CEEE-EEEeecCCCcccchhhcccceeecccccccc
Q 019076 183 ELFLAYDRFSLSEL---EPPMLLQEFVNHGGILFKIYIIG----ETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 254 (346)
Q Consensus 183 ~m~lv~~~~~L~~l---~~p~v~QEfI~h~G~~~KV~VvG----~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~ 254 (346)
++.++.+.+++... ..++++||||+ |..+.|.+++ +++. +..+..+. . ..|....
T Consensus 164 gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~~~-~-------~~g~~~~------- 226 (331)
T 2pn1_A 164 EVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEKLT-M-------RAGETDK------- 226 (331)
T ss_dssp -------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEEEE-E-------ETTEEEE-------
T ss_pred CeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEEEE-e-------cCCceeE-------
Confidence 99999999888764 46899999996 7999988875 3443 33332211 0 0111000
Q ss_pred cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccC-CCCC
Q 019076 255 ASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINY-FPGY 316 (346)
Q Consensus 255 ~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~-fPg~ 316 (346)
.. + +..+.+.++|.++.++||+ .++++|++.. +| ++|++|||. +||.
T Consensus 227 ------~~-~-----~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g-~~~~iEiN~R~~g~ 275 (331)
T 2pn1_A 227 ------SR-S-----VLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AG-TLYLSEINPRFGGG 275 (331)
T ss_dssp ------EE-E-----ECCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TT-EEEEEEEESSCCTT
T ss_pred ------eE-E-----eccHHHHHHHHHHHHHhCCcceEEEEEEEc--CC-CEEEEEEeCCCCCc
Confidence 00 0 1235689999999999999 6778999954 23 799999999 5664
No 41
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.54 E-value=1e-13 Score=131.46 Aligned_cols=226 Identities=15% Similarity=0.156 Sum_probs=132.2
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCC--------CC---CCC-c---------cEEEEcccchhhHHHHHHHHHhCC
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPL--------SD---QGP-F---------DVVLHKLSGMEWCKIIEDYRQKHP 104 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l--------~~---q~~-f---------DvilhK~t~~~~~~~l~~y~~~~p 104 (346)
..+.+.++ ++|++++.+|.+... .+ ..+ + |+|+.- .+.......+.+ +..
T Consensus 14 ~~l~~a~~------~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~~~--~e~~~~~~~~~l-e~~ 84 (334)
T 2r85_A 14 LQILKGAK------DEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPT--GSFVAHLGIELV-ENM 84 (334)
T ss_dssp HHHHHHHH------HTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEECCC--TTHHHHHCHHHH-HTC
T ss_pred HHHHHHHH------hCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEEEC--cchhhhhHHHHH-HHc
Confidence 34556666 899999999987421 01 112 2 555422 111111111222 346
Q ss_pred CeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceee
Q 019076 105 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 184 (346)
Q Consensus 105 ~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m 184 (346)
+++++++++++..+.||..+.+.|++ ++|++|++ +. +. ..++||+|+||..+. +|.++
T Consensus 85 g~~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~--~~-~~---------~~l~~P~vvKP~~g~---~s~Gv 142 (334)
T 2r85_A 85 KVPYFGNKRVLRWESDRNLERKWLKK-------AGIRVPEV--YE-DP---------DDIEKPVIVKPHGAK---GGKGY 142 (334)
T ss_dssp CSCBBSCTTHHHHHHSHHHHHHHHHH-------TTCCCCCB--CS-CG---------GGCCSCEEEEECC-------TTC
T ss_pred CCCccCCHHHHHHHHhHHHHHHHHHH-------cCCCCCCc--cC-Ch---------HHcCCCEEEEeCCCC---CCCCE
Confidence 78888999999999999999999986 58999998 32 11 126799999998733 57899
Q ss_pred EEEeChhhhhcc----------C--CCeEEEecccCCCeEEEEEE----ECCEEEEE---EeecCCCcccchhhc--ccc
Q 019076 185 FLAYDRFSLSEL----------E--PPMLLQEFVNHGGILFKIYI----IGETIKVV---RRFSLPNVSKRELAK--VVS 243 (346)
Q Consensus 185 ~lv~~~~~L~~l----------~--~p~v~QEfI~h~G~~~KV~V----vG~~v~~~---~R~Slp~~~~~~~~~--~~g 243 (346)
.++.+.++|... . .++++||||+ |..+-+.+ +++++.+. .|..... +.... ...
T Consensus 143 ~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~~---~~~~~~~~~~ 217 (334)
T 2r85_A 143 FLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESNV---DAIGRIPAKD 217 (334)
T ss_dssp EEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEEG---GGGGGSCHHH
T ss_pred EEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC--CceeEEEEeecCcCceeeeeeeccEEEecc---Cccccccccc
Confidence 999999887542 2 6899999995 77664221 22322111 1110000 00000 000
Q ss_pred eeec---ccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhC------CcEeEEEEEEecCcCCeEEEEeccCCC
Q 019076 244 VFRF---PRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLG------LRLFNIDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 244 ~~~~---~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG------l~lfGvDvi~~~~~g~~~~ViDVN~fP 314 (346)
.+.. +.....+.. +..+++ ...+.++++|.++.++|| ..++++|++++. +| ++||+|||.-|
T Consensus 218 ~~~~~~~~~~~~~g~~--p~~l~~-----~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g-~~~viEiN~R~ 288 (334)
T 2r85_A 218 QLEFDMDITYTVIGNI--PIVLRE-----SLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEISARI 288 (334)
T ss_dssp HTTSCCCCCEEEEEEE--ECCCCG-----GGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEECSC
T ss_pred ccccccCCceeeeCCC--CcccCH-----HHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CC-CEEEEEEeCCc
Confidence 0000 000000000 111211 124668999999999994 567789999974 33 69999999999
Q ss_pred CC
Q 019076 315 GY 316 (346)
Q Consensus 315 g~ 316 (346)
|-
T Consensus 289 g~ 290 (334)
T 2r85_A 289 VA 290 (334)
T ss_dssp CG
T ss_pred CC
Confidence 86
No 42
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.51 E-value=4e-13 Score=135.43 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=128.5
Q ss_pred CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhH
Q 019076 79 PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQ 158 (346)
Q Consensus 79 ~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~ 158 (346)
.+|+|+. .++ .....+.+..++ -|++ -.+++++..+.||..+.+.|.+ .||++|++..+.+ .+++.+
T Consensus 102 ~id~Vip-~sE-~~l~~~a~~~e~-~Gi~-g~~~~ai~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s-~ee~~~- 168 (474)
T 3vmm_A 102 GADAITT-NNE-LFIAPMAKACER-LGLR-GAGVQAAENARDKNKMRDAFNK-------AGVKSIKNKRVTT-LEDFRA- 168 (474)
T ss_dssp TCSEEEE-SCG-GGHHHHHHHHHH-TTCC-CSCHHHHHHTTCHHHHHHHHHH-------TTSCCCCEEEECS-HHHHHH-
T ss_pred CCCEEEE-CCc-ccHHHHHHHHHH-cCCC-CCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEEECC-HHHHHH-
Confidence 3566666 332 333344444444 4666 8899999999999999999997 5899999988852 222222
Q ss_pred HHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------------CCCeEEEecccCCC---------
Q 019076 159 VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------------EPPMLLQEFVNHGG--------- 210 (346)
Q Consensus 159 l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------------~~p~v~QEfI~h~G--------- 210 (346)
....++||+|+||..+. +|.+|.++.++++|.+. ..++++||||+..-
T Consensus 169 -~~~~lg~PvVVKP~~g~---gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~ 244 (474)
T 3vmm_A 169 -ALEEIGTPLILKPTYLA---SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGY 244 (474)
T ss_dssp -HHHHSCSSEEEEESSCC---TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSS
T ss_pred -HHHHcCCCEEEEECCCC---cCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccc
Confidence 23468999999998733 57899999999887532 36899999997321
Q ss_pred ---eEEEEEEECCEEEEE--EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 019076 211 ---ILFKIYIIGETIKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHR 285 (346)
Q Consensus 211 ---~~~KV~VvG~~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~ 285 (346)
..+.+++.++++.++ .++. +.. .+... + . . .+..+++. ..+.+.++|.++.++
T Consensus 245 ~~e~sv~~v~~dg~~~~v~i~~~~-~~~---~~~~~-~-------~----~-~Pa~l~~~-----~~~~l~~~a~~~~~a 302 (474)
T 3vmm_A 245 SDYISIEGIMADGEYFPIAIHDKT-PQI---GFTET-S-------H----I-TPSILDEE-----AKKKIVEAAKKANEG 302 (474)
T ss_dssp CSEEEEEEEEETTEEEEEEEEEEC-CCB---TTBCC-E-------E----E-ESCCCCHH-----HHHHHHHHHHHHHHH
T ss_pred cceeEEEEEEECCeEEEEEEEeec-cCC---Cccce-E-------E----E-ECCCCCHH-----HHHHHHHHHHHHHHH
Confidence 234456777775432 2221 110 00000 0 0 0 01122111 135689999999999
Q ss_pred hCCcEeE--EEEEEecCcCCeEEEEeccCCCC
Q 019076 286 LGLRLFN--IDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 286 lGl~lfG--vDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+|+.-.+ +|++.+. +| ++|+||||.-+|
T Consensus 303 lG~~g~~~~vef~~~~-dg-~~~~iEvNpR~~ 332 (474)
T 3vmm_A 303 LGLQNCATHTEIKLMK-NR-EPGLIESAARFA 332 (474)
T ss_dssp HTCCSEEEEEEEEEEG-GG-EEEEEEEESSCC
T ss_pred cCCCCccEEEEEEEcC-CC-CEEEEEEeCCCC
Confidence 9998776 9999975 34 799999997765
No 43
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.50 E-value=1.4e-13 Score=135.61 Aligned_cols=179 Identities=12% Similarity=0.069 Sum_probs=114.8
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
.|++++ .++++++.+.||..+.+.|++ .+||+|++..+. +.+++.+. ...++||+|+||.. |+ .|.
T Consensus 84 ~gi~~~g~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~-~~~~~~~~--~~~~~~P~vvKp~~--~~-gg~ 150 (417)
T 2ip4_A 84 RGLLLFGPTQKAAMIEGSKAFAKGLMER-------YGIPTARYRVFR-EPLEALAY--LEEVGVPVVVKDSG--LA-AGK 150 (417)
T ss_dssp HTCCEESCCHHHHHHHHCHHHHHHHHHH-------TCCCBCCEEEES-SHHHHHHH--HHHHCSSEEEECTT--SC-SST
T ss_pred CCCCEECccHHHHHHHcCHHHHHHHHHH-------cCCCCCCeeeeC-CHHHHHHH--HHHcCCCEEEEECC--CC-CCC
Confidence 467777 889999999999999999997 589999998874 22223222 23478999999986 33 578
Q ss_pred eeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEEC--CEEEEE--EeecCCCcccchhhcccceeeccc
Q 019076 183 ELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIG--ETIKVV--RRFSLPNVSKRELAKVVSVFRFPR 249 (346)
Q Consensus 183 ~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG--~~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~ 249 (346)
+|.++.+.+++.+. ..++++||||+ |.++.|.+++ +.+... .|..-+.. +.. .+ .++
T Consensus 151 Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~---~~~--~~-~~~-- 220 (417)
T 2ip4_A 151 GVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTDGETILPLLPSQDHKRLL---DGD--QG-PMT-- 220 (417)
T ss_dssp TCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEESSSCEEECCCBEECCEEE---TTT--EE-EEC--
T ss_pred CEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEeCCEEEEcchheechhhc---cCC--CC-CcC--
Confidence 99999999887642 26899999996 8899998883 334332 12111100 000 00 000
Q ss_pred ccccccccCCCCCCCCCCCCCC--hHHH-HHHHHHHHHHh---CC---cEeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 250 VSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GL---RLFNIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 250 vs~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~l~~~l---Gl---~lfGvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.. .+...|. .+++ .+.+ ++++.++.++| |+ .++++|++.+. +| +||+|||.-||-.
T Consensus 221 g~-------~~~~~p~--~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 285 (417)
T 2ip4_A 221 GG-------MGAVAPY--PMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGDP 285 (417)
T ss_dssp SC-------SEEEESC--CCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCTT
T ss_pred CC-------CeeeeCC--CCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCCc
Confidence 00 0001111 1111 1223 55577777776 44 45679999874 33 8999999999844
No 44
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.50 E-value=6.6e-13 Score=132.05 Aligned_cols=176 Identities=14% Similarity=0.228 Sum_probs=120.3
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
.|++++ .++++++.+.||..+.+.|.+ .||++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 102 ~g~~~~g~~~~~~~~~~dK~~~~~~l~~-------~Gip~p~~~~~~~~-~~~e~~~--~~~~~g~PvvvKp~~--g~-g 168 (446)
T 3ouz_A 102 HNIKFIGPSVEAMNLMSDKSKAKQVMQR-------AGVPVIPGSDGALA-GAEAAKK--LAKEIGYPVILKAAA--GG-G 168 (446)
T ss_dssp TTCEESSCCHHHHHHHHSHHHHHHHHHH-------TTCCBCSBCSSSCC-SHHHHHH--HHHHHCSSEEEEETT--CC-T
T ss_pred CCCceECcCHHHHHHhCCHHHHHHHHHH-------cCCCcCCCcccCCC-CHHHHHH--HHHHhCCCEEEEECC--CC-C
Confidence 467877 889999999999999999987 589999986 342 2222222 224588999999986 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~-~~~R~-Slp~~~~~~~~~~~ 242 (346)
|.+|.++.++++|.+. ..++++||||+ +++.+.|.|+++. +. ...|. +...- ..
T Consensus 169 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~-------~~ 240 (446)
T 3ouz_A 169 GRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQ-NPRHIEVQVIGDSFGNVIHVGERDCSMQRR-------HQ 240 (446)
T ss_dssp TCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEEET-------TE
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeceeeeeec-------Cc
Confidence 7899999999987642 57899999996 2388999888653 32 22221 11000 00
Q ss_pred ceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 243 SVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-fGvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.... .. +. .+++ ...+.+.++|.++.++||+.- +++|++.+.+ | ++|++|||.-|+-.
T Consensus 241 ~~~~---------~~-p~~~l~~-----~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~-g-~~~~iEiNpR~~g~ 300 (446)
T 3ouz_A 241 KLIE---------ES-PAILLDE-----KTRTRLHETAIKAAKAIGYEGAGTFEFLVDKN-L-DFYFIEMNTRLQVE 300 (446)
T ss_dssp EEEE---------EE-SCTTSCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT-C-CEEEEEEESSCCTT
T ss_pred eEEE---------EC-CCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceEEEEEEeCC-C-CEEEEEeECCCCCc
Confidence 0000 00 11 1111 113568899999999999964 5599999853 3 69999999999743
No 45
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.49 E-value=5e-13 Score=133.21 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=121.6
Q ss_pred CCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCh
Q 019076 78 GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI 155 (346)
Q Consensus 78 ~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~ 155 (346)
..+|+|+.- .+.. ...+.+.+++ .|++++ .++++++.+.||..+.+.|.+ .+||+|++..+. +.+++
T Consensus 82 ~~~d~vi~~--~E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~ 150 (451)
T 2yrx_A 82 QAIDLTIVG--PEAPLASGIVDRFMA-EGLRIFGPSQRAALIEGSKAFAKELMKK-------YGIPTADHAAFT-SYEEA 150 (451)
T ss_dssp TTCSEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHH-------TTCCBCCEEEES-CHHHH
T ss_pred cCCCEEEEC--CchHHHHHHHHHHHH-CCCCEeCccHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEEEC-CHHHH
Confidence 346666652 2222 1223333333 578887 788999999999999999987 589999998885 23223
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CC
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GE 220 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vv--G~ 220 (346)
.+. ...++||+|+||.. |+ .|.++.++.+.+++... ..++++||||+ |..+.|.++ |+
T Consensus 151 ~~~--~~~~~~PvVvKp~~--~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 151 KAY--IEQKGAPIVIKADG--LA-AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGE 223 (451)
T ss_dssp HHH--HHHHCSSEEEEECC-------CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETT
T ss_pred HHH--HHhcCCcEEEEeCC--CC-CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCC
Confidence 222 23478999999987 33 57899999999887532 26899999997 899998877 44
Q ss_pred EEEEE--EeecCCCcccchhhcccceeeccc-ccccccccCCCCCCCCCCCCCC--hHHH-HHHHHHHHHHh---CCc--
Q 019076 221 TIKVV--RRFSLPNVSKRELAKVVSVFRFPR-VSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GLR-- 289 (346)
Q Consensus 221 ~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~-vs~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~l~~~l---Gl~-- 289 (346)
.+..+ .|.. . ..+++.. ....+ .+...|. ..+++ .+.+ ++++.++.++| |+.
T Consensus 224 ~~~~~~~~~~~-~-----------~~~~~~~~~~~g~----~~~~~p~-~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 286 (451)
T 2yrx_A 224 KVYPLAIAQDH-K-----------RAYDGDEGPNTGG----MGAYSPV-PQISDEMMDAALEAILRPAAKALAAEGRPFL 286 (451)
T ss_dssp EEEECCCBEEC-C-----------EEETTTEEEECSC----SEEEESC-TTSCHHHHHHHHHHTHHHHHHHHHHTTCCCE
T ss_pred EEEEeeeEEec-c-----------ccccCCCCCCCCC----CeEEccC-CCCCHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 33321 1110 0 0000000 00000 0001110 00111 1223 55677777766 554
Q ss_pred -EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 290 -LFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 290 -lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
++++|++++. + +++|+|||.-||-.+
T Consensus 287 G~~~ve~~~~~-~--g~~viEiN~R~g~~~ 313 (451)
T 2yrx_A 287 GVLYAGLMATA-N--GPKVIEFNARFGDPE 313 (451)
T ss_dssp EEEEEEEEEET-T--EEEEEEEESSCCTTH
T ss_pred eEEEEEEEEeC-C--CcEEEEEecCCCCcH
Confidence 5668999975 2 499999999998543
No 46
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.49 E-value=5.3e-13 Score=146.49 Aligned_cols=219 Identities=16% Similarity=0.211 Sum_probs=141.9
Q ss_pred cCCcEEEEecCCCCCC-------C-----------------CCCccEEEEcccchhhH---HHHHH--HHHhCCCeeee-
Q 019076 60 NKGISFVAIDQNRPLS-------D-----------------QGPFDVVLHKLSGMEWC---KIIED--YRQKHPEVTIL- 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~-------~-----------------q~~fDvilhK~t~~~~~---~~l~~--y~~~~p~v~VI- 109 (346)
+.|++++.+|.+..-. + ...+|+|+.-....... ..+.+ ..++ -|+.++
T Consensus 39 ~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~-~gv~~~G 117 (1073)
T 1a9x_A 39 EEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEE-FGVTMIG 117 (1073)
T ss_dssp HHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHH-HTCEECS
T ss_pred HcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHH-cCCeeeC
Confidence 8999999999754220 0 12457776554432111 11222 3333 467887
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
.++++++.+.||..+.+.|.+ .|||+|++.++.+ .+++.+. ...++||+|+||..+.| |.++.++.+
T Consensus 118 ~~~~ai~~~~DK~~~k~~l~~-------~Gipvp~~~~v~~-~~ea~~~--~~~ig~PvVvKp~~~~G---g~Gv~iv~~ 184 (1073)
T 1a9x_A 118 ATADAIDKAEDRRRFDVAMKK-------IGLETARSGIAHT-MEEALAV--AADVGFPCIIRPSFTMG---GSGGGIAYN 184 (1073)
T ss_dssp SCHHHHHHHHSHHHHHHHHHH-------TTCCCCSEEEESS-HHHHHHH--HHHHCSSEEEEETTCCT---TTTCEEESS
T ss_pred CCHHHHHHhhCHHHHHHHHHH-------CCcCCCCEEEECC-HHHHHHH--HHHcCCCEEEEECCCCC---CCceEEeCC
Confidence 899999999999999999997 5899999998852 2222221 24589999999987444 678999999
Q ss_pred hhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE---EEE--E-EeecCCCcccchhhcccceeecccccccc
Q 019076 190 RFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKV--V-RRFSLPNVSKRELAKVVSVFRFPRVSSAA 254 (346)
Q Consensus 190 ~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~--~-~R~Slp~~~~~~~~~~~g~~~~~~vs~~~ 254 (346)
+++|.+. ..++++||||+ +.+.+.|-|++|. +.. . .+.. |. ...+ |. .+.
T Consensus 185 ~eel~~~~~~~~~~~~~~~vlvEe~I~-G~~E~~v~v~~d~~g~~v~~~~~e~~d-p~----~v~~--g~----s~~--- 249 (1073)
T 1a9x_A 185 REEFEEICARGLDLSPTKELLIDESLI-GWKEYEMEVVRDKNDNCIIVCSIENFD-AM----GIHT--GD----SIT--- 249 (1073)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEECCT-TSEEEEEEEEECTTCCEEEEEEEEESS-CT----TSCG--GG----SCE---
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEccC-CCeEEEEEEEEeCCCCEEEEEEEeccc-CC----cccc--Cc----EEE---
Confidence 9988653 24799999996 2379999999753 322 1 2211 11 0000 00 000
Q ss_pred cccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 255 ASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 255 ~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~--lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
. .++ .+++. ..+.+.++|.++.++||+. .+++|++++..+| ++||||||.-++
T Consensus 250 -~-~Pa~~l~~~-----~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g-~~~viEiNpR~~ 305 (1073)
T 1a9x_A 250 -V-APAQTLTDK-----EYQIMRNASMAVLREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 305 (1073)
T ss_dssp -E-ESCCSCCHH-----HHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred -E-ecCCCCCHH-----HHHHHHHHHHHHHHHcCcccCceEEEEEEECCCC-CEEEEEecCCCC
Confidence 0 011 11110 1346899999999999997 8899999975344 799999994443
No 47
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.49 E-value=4.7e-13 Score=133.60 Aligned_cols=223 Identities=10% Similarity=0.065 Sum_probs=134.7
Q ss_pred CCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCh
Q 019076 78 GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI 155 (346)
Q Consensus 78 ~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~ 155 (346)
...|+|+. ..+.. ...+.+..++ .|++++ .++++++.+.||..+.+.|++ ++||+|++..+. +.++.
T Consensus 82 ~~id~vv~--g~E~~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~-------~GIp~p~~~~~~-~~~ea 150 (442)
T 3lp8_A 82 EKIELVVI--GPETPLMNGLSDALTE-EGILVFGPSKAAARLESSKGFTKELCMR-------YGIPTAKYGYFV-DTNSA 150 (442)
T ss_dssp TTCCEEEE--CSHHHHHTTHHHHHHH-TTCEEESCCHHHHHHHHCHHHHHHHHHH-------HTCCBCCEEEES-SHHHH
T ss_pred hCCCEEEE--CCcHHHHHHHHHHHHh-cCCcEecCCHHHHHHhhCHHHHHHHHHH-------CCCCCCCEEEEC-CHHHH
Confidence 34677775 22221 2234444444 578887 899999999999999999987 489999999885 32223
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CC
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GE 220 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vv--G~ 220 (346)
.+. ...++||+|+||.. |+ .|.++.++.+.+++.+. ..++++||||+ |..+.|.++ |+
T Consensus 151 ~~~--~~~~g~PvVvKp~~--~~-gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~ 223 (442)
T 3lp8_A 151 YKF--IDKHKLPLVVKADG--LA-QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVDGS 223 (442)
T ss_dssp HHH--HHHSCSSEEEEESS--CC-TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEESS
T ss_pred HHH--HHHcCCcEEEeECC--CC-CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEECCC
Confidence 222 23589999999985 33 67899999999887532 25899999996 899988887 44
Q ss_pred EEEE--EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC--ChHHHHHH----HHHHHHHhCCcE--
Q 019076 221 TIKV--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERL----ARELRHRLGLRL-- 290 (346)
Q Consensus 221 ~v~~--~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~l----A~~l~~~lGl~l-- 290 (346)
.+.. ..+.- .....++. + .+ . .+ .+...|. ..++ ..+.+.+. +.++.+++|+.+
T Consensus 224 ~~~~~~~~~~~-~~~~~~~~----g-~~--~---gg----~g~~~P~-~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G 287 (442)
T 3lp8_A 224 NPVILGVAQDY-KTIGDNNK----G-PN--T---GG----MGSYSKP-NIITQEMEHIIIQKIIYPTIKAMFNMNIQFRG 287 (442)
T ss_dssp CEEEEEEEEEC-CEEEGGGE----E-EE--C---SC----SEEEECT-TSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEE
T ss_pred eEEEeEEeEee-eecccCCC----C-CC--C---CC----cEEEeeC-CCCCHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 4432 22211 11000000 0 00 0 00 0011111 0011 12234444 677778999854
Q ss_pred -eEEEEEEecCcCCeEEEEeccCCCCCCCCccc----HHHHHHHHHHHHHhh
Q 019076 291 -FNIDMIREHGMRDVFYVIDINYFPGYGKMPDY----EHIFTDFLLSLEQSK 337 (346)
Q Consensus 291 -fGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~----~~~l~~~l~~~i~~~ 337 (346)
+++|++.+.+ +++|||+|.-||-...+.. ..-|.+.+.+.+..+
T Consensus 288 ~~~ve~~~~~~---g~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~ 336 (442)
T 3lp8_A 288 LLFAGIIIKKN---EPKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGK 336 (442)
T ss_dssp EEEEEEEEETT---EEEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTC
T ss_pred EEEEEEEEeCC---CeEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCC
Confidence 4599999752 4999999999993221111 112455555555543
No 48
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.48 E-value=2e-13 Score=134.50 Aligned_cols=203 Identities=13% Similarity=0.070 Sum_probs=124.0
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|+|+.- .+... ..+.+..++ .|++++ .++++++.+.||..+.+.|.+ .+||+|++..+. +.+++.
T Consensus 62 ~~d~v~~~--~E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~ 130 (424)
T 2yw2_A 62 GVDFTIVG--PEAPLVEGIVDEFEK-RGLKIFGPNKEAAKLEGSKAFAKTFMKK-------YGIPTARYEVFT-DFEKAK 130 (424)
T ss_dssp TCSEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHH-------TTCCBCCEEEES-CHHHHH
T ss_pred CCCEEEEC--CchHHHHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHH-------cCCCCCCeEEEC-CHHHHH
Confidence 46777652 22221 123333333 578887 889999999999999999997 589999998874 222232
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CCE
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GET 221 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vv--G~~ 221 (346)
+. ...++||+|+||..+ + .|.+|.++.+.+++.+. ..++++||||+ |..+.|.++ |+.
T Consensus 131 ~~--~~~~~~PvvvKp~~g--~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~ 203 (424)
T 2yw2_A 131 EY--VEKVGAPIVVKADGL--A-AGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDR 203 (424)
T ss_dssp HH--HHHHCSSEEEEESSC--C-TTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTE
T ss_pred HH--HHHcCCcEEEEeCCC--C-CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCE
Confidence 22 234789999999863 3 57899999999887542 25899999996 889988777 554
Q ss_pred EEEE--EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCC--hHHH-HHHHHHHHHHh---CCc---E
Q 019076 222 IKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GLR---L 290 (346)
Q Consensus 222 v~~~--~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~l~~~l---Gl~---l 290 (346)
+... .|...... +.. .+ .+... .+...|. ..+++ .+.+ ++++.++.++| |++ +
T Consensus 204 ~~~~~~~~~~~~~~---~~~--~~---~~~g~-------~~~~~p~-~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~ 267 (424)
T 2yw2_A 204 YVPLPTSQDHKRLL---DED--KG---PNTGG-------MGAYSPT-PVINEEVEKRIREEIVERVIKGLKEEGIYYRGF 267 (424)
T ss_dssp EEECCCBEECCEEE---TTT--EE---EECSC-------SEEEESC-TTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEE
T ss_pred EEeecceeeccccc---cCC--CC---CCCCC-------CeeECCC-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeE
Confidence 4432 12110000 000 00 00000 0001110 00111 1223 46777777776 554 4
Q ss_pred eEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 291 FNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 291 fGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
+++|++.+. + ++||+|||.-||-.+
T Consensus 268 ~~ve~~~~~-~--g~~viEiN~R~g~~~ 292 (424)
T 2yw2_A 268 LYAGLMITK-E--GPKVLEFNVRLGDPE 292 (424)
T ss_dssp EEEEEEEET-T--EEEEEEEESSCCTTT
T ss_pred EEEEEEEeC-C--CcEEEEEecCCCCcH
Confidence 569999975 2 499999999999443
No 49
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.48 E-value=3.4e-13 Score=132.97 Aligned_cols=181 Identities=9% Similarity=0.069 Sum_probs=117.7
Q ss_pred eeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE
Q 019076 107 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 186 (346)
Q Consensus 107 ~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l 186 (346)
++-.++++++.+.||..+.+.|++ .+||+|++..+. +.+++.+ ....++||+|+||..+. .|.+|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~e~~~--~~~~~g~PvvvKp~~~~---gg~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKK-------YGIRTARFEVAE-TPEELRE--KIKKFSPPYVIKADGLA---RGKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEES-SHHHHHH--HHTTSCSSEEEEESSCC---SSCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEEEEC-CHHHHHH--HHHhcCCCEEEEeCCCC---CCCCEEE
Confidence 556899999999999999999997 589999998874 2222222 22468999999998633 5789999
Q ss_pred EeChhhhhcc-----------C--CCeEEEecccCCCeEEEEEEE--CCEEEEEEe-ecCCCcccchhhcccceeecccc
Q 019076 187 AYDRFSLSEL-----------E--PPMLLQEFVNHGGILFKIYII--GETIKVVRR-FSLPNVSKRELAKVVSVFRFPRV 250 (346)
Q Consensus 187 v~~~~~L~~l-----------~--~p~v~QEfI~h~G~~~KV~Vv--G~~v~~~~R-~Slp~~~~~~~~~~~g~~~~~~v 250 (346)
+.+.++|.+. . .++++||||+ |+.+.|.++ |+.+..+.. ...... ..+....+..
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~-------~~~~~~~~~g 230 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVILPFVRDYKRL-------MDGDRGPNTG 230 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEECCCCEECCEE-------ETTTEEEECS
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEECCCEEEEeeeeEeeeec-------cCCCCCCCCC
Confidence 9999887541 1 3899999996 899999888 443332210 000000 0000000000
Q ss_pred cccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh-----CC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 251 SSAAASADDADLDPGIAELPPRPLLERLARELRHRL-----GL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 251 s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-----Gl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.. +.. .+..+++. ..+.++++|.++.++| +. .++++|++++. + .+||+|||.-||-.+.
T Consensus 231 ~~-~~~-~P~~l~~~-----~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~--g~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 231 GM-GSW-GPVEIPSD-----TIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-G--DPYILEYNVRLGDPET 295 (412)
T ss_dssp CS-EEE-ECCCCCHH-----HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-T--EEEEEEEESSCCTTHH
T ss_pred Cc-eEE-ECCCCCHH-----HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-C--CcEEEEEecCCCCCcc
Confidence 00 000 01111110 1345789999999999 44 56679999975 2 3999999999986643
No 50
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.47 E-value=8.7e-13 Score=131.11 Aligned_cols=184 Identities=13% Similarity=0.193 Sum_probs=120.7
Q ss_pred HHHHHHhCCCeeeeC-hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEec
Q 019076 96 IEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKP 172 (346)
Q Consensus 96 l~~y~~~~p~v~VID-p~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP 172 (346)
+.+..+ ..|++++. ++++++.+.||..+.+.|++ ++||+|++. .+. +.+++.+. ...++||+|+||
T Consensus 90 ~~~~~~-~~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp 158 (451)
T 2vpq_A 90 FAELCE-ACQLKFIGPSYQSIQKMGIKDVAKAEMIK-------ANVPVVPGSDGLMK-DVSEAKKI--AKKIGYPVIIKA 158 (451)
T ss_dssp HHHHHH-TTTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCSBCSSCBS-CHHHHHHH--HHHHCSSEEEEE
T ss_pred HHHHHH-HcCCeEECCCHHHHHHhcCHHHHHHHHHH-------cCCCcCCCcccCcC-CHHHHHHH--HHhcCCcEEEEE
Confidence 344443 46788765 58999999999999999997 589998865 443 22222222 234789999999
Q ss_pred CcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEee-cCCCcc
Q 019076 173 LVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRF-SLPNVS 234 (346)
Q Consensus 173 ~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~-~~R~-Slp~~~ 234 (346)
.. |+ +|.+|.++.+.+++... +.++++||||+ +++.+.|.++++ ++.. ..|. +...
T Consensus 159 ~~--g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~~~~~-- 232 (451)
T 2vpq_A 159 TA--GG-GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIE-NFRHIEIQIVGDSYGNVIHLGERDCTIQR-- 232 (451)
T ss_dssp TT--CC-TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCC-SEEEEEEEEEECTTSCEEEEEEEEEEEEE--
T ss_pred CC--CC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC-CCeEEEEEEEEcCCCCEEEEeccccchhc--
Confidence 86 33 57899999999887542 46899999996 237888888753 3433 2221 1100
Q ss_pred cchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccC
Q 019076 235 KRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINY 312 (346)
Q Consensus 235 ~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-fGvDvi~~~~~g~~~~ViDVN~ 312 (346)
.....+. . .+.. +++. ..+.+.++|.++.++||+.- +++|++.+..+| ++||+|||.
T Consensus 233 -----~~~~~~~---------~-~P~~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~ 291 (451)
T 2vpq_A 233 -----RMQKLVE---------E-APSPILDDE-----TRREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNT 291 (451)
T ss_dssp -----TTEEEEE---------E-ESCTTCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEEC
T ss_pred -----cccceEE---------E-cCCCCCCHH-----HHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeC
Confidence 0000000 0 0111 1110 13468899999999999985 459999972234 699999999
Q ss_pred CCCCC
Q 019076 313 FPGYG 317 (346)
Q Consensus 313 fPg~~ 317 (346)
-|+-.
T Consensus 292 R~~~~ 296 (451)
T 2vpq_A 292 RIQVE 296 (451)
T ss_dssp SCCTT
T ss_pred CCCCc
Confidence 98754
No 51
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.47 E-value=6.5e-13 Score=130.83 Aligned_cols=204 Identities=10% Similarity=0.019 Sum_probs=123.9
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|+|+.- .+.. ...+.+..++ .|++++ .++++++.+.||..+.+.|++ .+||+|++..+. +.+++.
T Consensus 62 ~~d~v~~~--~E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~ 130 (422)
T 2xcl_A 62 QVGLTIVG--PEVPLIEGLVDEFEK-AGLHVFGPSKAAAIIEGSKQFAKDLMKK-------YDIPTAEYETFT-SFDEAK 130 (422)
T ss_dssp TEEEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHH-------TTCCBCCEEEES-CHHHHH
T ss_pred CCCEEEEC--CcHHHHHHHHHHHHH-CCCCEECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeEEEC-CHHHHH
Confidence 45666652 2222 1223333333 467777 889999999999999999997 589999998884 222232
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CCE
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GET 221 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vv--G~~ 221 (346)
+. ...++||+|+||.. |+ .|.++.++.+.+++... ..++++||||+ |..+.|.++ |+.
T Consensus 131 ~~--~~~~~~P~vvKp~~--~~-~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~dG~~ 203 (422)
T 2xcl_A 131 AY--VQEKGAPIVIKADG--LA-AGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFVKGEK 203 (422)
T ss_dssp HH--HHHHCSSEEEEESS--CG-GGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTE
T ss_pred HH--HHhcCCCEEEEeCC--CC-CCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEEcCCE
Confidence 22 23478999999986 33 67899999999887542 26899999997 899998887 454
Q ss_pred EEEE--EeecCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHH-HHHHHHHHHHh---CCc---Ee
Q 019076 222 IKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLL-ERLARELRHRL---GLR---LF 291 (346)
Q Consensus 222 v~~~--~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~l---Gl~---lf 291 (346)
+..+ .|..-... +.. .+. ++ ... +.. .+.. +++. ..+.+ ++++.++.++| |+. ++
T Consensus 204 ~~~~~~~~~~~~~~---~~~--~~~-~~--g~~-~~~-~p~~~l~~~-----~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (422)
T 2xcl_A 204 VYPMVIAQDHKRAF---DGD--KGP-NT--GGM-GAY-SPVPQISEE-----TVRHAVETIVKPAAKAMVQEGRSFTGVL 268 (422)
T ss_dssp EEECCCBEEEEEEE---GGG--EEE-EE--EEE-EEE-ESCTTSCHH-----HHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred EEecceeeeeehhc---CCC--CCC-CC--CCC-eeE-ccCCCCCHH-----HHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3321 11100000 000 000 00 000 000 0111 1110 01223 34777777776 554 46
Q ss_pred EEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 292 NIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 292 GvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
++|++.+. + +++|+|||.-||-.+
T Consensus 269 ~vd~~~~~-~--g~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 269 YAGLMLTE-N--GSKVIEFNARFGDPE 292 (422)
T ss_dssp EEEEEEET-T--EEEEEEEESSCCTTT
T ss_pred EeeEEEeC-C--CcEEEEEecCCCCcH
Confidence 68999975 2 499999999999554
No 52
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.46 E-value=6.8e-13 Score=145.64 Aligned_cols=216 Identities=18% Similarity=0.290 Sum_probs=131.7
Q ss_pred cCCcEEEEecCCCCCC--CC----------------------CCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHH
Q 019076 60 NKGISFVAIDQNRPLS--DQ----------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDA 114 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~--~q----------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~a 114 (346)
+.|++++.+|.+.... .. ...|.|+.-...... ..+.+.+++ .|++++ .++++
T Consensus 591 ~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d~Vi~~~g~~~~-~~la~~Le~-~Gi~i~G~~~~a 668 (1073)
T 1a9x_A 591 EDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEA-AGVPVIGTSPDA 668 (1073)
T ss_dssp HTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHH-TTCCBCSSCHHH
T ss_pred hcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcceEEeecCCchH-HHHHHHHHH-CCCCeeCCCHHH
Confidence 8999999999764221 00 113444432222111 123344443 578777 88999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~ 194 (346)
+..+.||..+.+.|.+ .+|++|++..+.+ .+++.+. ...++||+|+||..+. +|.+|.++.++++|.
T Consensus 669 i~~~~DK~~~~~ll~~-------~GIp~P~~~~~~s-~eea~~~--~~~ig~PvvVKP~~~~---gG~Gv~iv~~~~el~ 735 (1073)
T 1a9x_A 669 IDRAEDRERFQHAVER-------LKLKQPANATVTA-IEMAVEK--AKEIGYPLVVRASYVL---GGRAMEIVYDEADLR 735 (1073)
T ss_dssp HHHHHSHHHHHHHHHH-------HTCCCCCEEECCS-HHHHHHH--HHHHCSSEEEEC----------CEEEECSHHHHH
T ss_pred HHHhhCHHHHHHHHHH-------cCcCCCCceEECC-HHHHHHH--HHHcCCCEEEEECCCC---CCCCeEEECCHHHHH
Confidence 9999999999999987 4899999998742 2222221 2357999999998733 578999999999886
Q ss_pred cc---------CCCeEEEecccCCCe-EEEEEEECCE--EEE--EEeecCC-CcccchhhcccceeecccccccccccCC
Q 019076 195 EL---------EPPMLLQEFVNHGGI-LFKIYIIGET--IKV--VRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 195 ~l---------~~p~v~QEfI~h~G~-~~KV~VvG~~--v~~--~~R~Slp-~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
.. ..|+++||||+ |. .+-|-++++. +.+ +.+.-.+ ++..++ ....++ .
T Consensus 736 ~~~~~a~~~~~~~~vlvEefI~--g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd-----~~~~~P----------~ 798 (1073)
T 1a9x_A 736 RYFQTAVSVSNDAPVLLDHFLD--DAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD-----SACSLP----------A 798 (1073)
T ss_dssp HHHHHCC--------EEEBCCT--TCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGG-----CCEEES----------C
T ss_pred HHHHHHHhhCCCCcEEEEEccC--CCcEEEEEEEEECCeEEEEeeEEEEeccCCccCC-----ceEEec----------C
Confidence 53 35899999996 44 7877777443 332 2221111 111000 000000 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
..+++. ..+.++++|.++.++||+ .++++|+++++ +++||||||.-||
T Consensus 799 ~~l~~~-----~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~---~~~~viEvNpR~~ 847 (1073)
T 1a9x_A 799 YTLSQE-----IQDVMRQQVQKLAFELQVRGLMNVQFAVKN---NEVYLIEVNPRAA 847 (1073)
T ss_dssp SSCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECS---SCEEEEEEECSCC
T ss_pred CCCCHH-----HHHHHHHHHHHHHHHcCCcceEEEEEEEEC---CeEEEEEEECCCc
Confidence 011110 135689999999999999 78899999963 3699999999998
No 53
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.44 E-value=7e-13 Score=131.88 Aligned_cols=190 Identities=11% Similarity=0.004 Sum_probs=118.2
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCc
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 174 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~ 174 (346)
+.+..++ .|++++ .++++++.+.||..+.+.|.+ ++||+|++..+. +.++..+. ...++||+|+||..
T Consensus 83 ~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~-------~GIptp~~~~~~-~~~ea~~~--~~~~g~PvVvKp~~ 151 (431)
T 3mjf_A 83 VVDAFRA-AGLAIFGPTQAAAQLEGSKAFTKDFLAR-------HNIPSAEYQNFT-DVEAALAY--VRQKGAPIVIKADG 151 (431)
T ss_dssp HHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHH-------TTCSBCCEEEES-CHHHHHHH--HHHHCSSEEEEESS
T ss_pred HHHHHHh-cCCCeeCCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEeeC-CHHHHHHH--HHHcCCeEEEEECC
Confidence 4444444 478887 899999999999999999997 589999999885 33323232 23578999999985
Q ss_pred CCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEEC--CEEEEEEeecCCCcccchhh
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIG--ETIKVVRRFSLPNVSKRELA 239 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG--~~v~~~~R~Slp~~~~~~~~ 239 (346)
|+ .|.++.++.+.+++.+. ..++++||||+ |..+.|.++. +++..... .. ..+
T Consensus 152 --~~-gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~-----~~--~~~ 219 (431)
T 3mjf_A 152 --LA-AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVDGENVLPMAT-----SQ--DHK 219 (431)
T ss_dssp --SC-TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEESSCEEECCC-----BE--ECC
T ss_pred --CC-CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEcCCEEEEEEe-----eE--ece
Confidence 32 67899999999887542 25899999996 8999998884 34433110 00 000
Q ss_pred cccceeecccccccccccCCCCCCCCCCCCCC--hHHHHHH----HHHHHHHhCCcEe---EEEEEEecCcCCeEEEEec
Q 019076 240 KVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERL----ARELRHRLGLRLF---NIDMIREHGMRDVFYVIDI 310 (346)
Q Consensus 240 ~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~--~~~~~~l----A~~l~~~lGl~lf---GvDvi~~~~~g~~~~ViDV 310 (346)
..+++....+.+ ..+...|.. .++. .+.+.+. +.++.+++|+.+. ++|++.+. +| +++|||+
T Consensus 220 ---~~~~~~~g~~~g---g~g~~~P~~-~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g-~~~viEi 290 (431)
T 3mjf_A 220 ---RVGDGDTGPNTG---GMGAYSPAP-VVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DG-QPKVIEF 290 (431)
T ss_dssp ---EEETTTEEEECS---CSEEEESCT-TSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TS-CEEEEEE
T ss_pred ---ecccCCCCCCCC---CceEEeeCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CC-CeEEEEE
Confidence 001110000000 000111110 0110 1223332 4566678898654 49999975 33 5999999
Q ss_pred cCCCCCC
Q 019076 311 NYFPGYG 317 (346)
Q Consensus 311 N~fPg~~ 317 (346)
|.-||..
T Consensus 291 N~R~G~~ 297 (431)
T 3mjf_A 291 NCRFGDP 297 (431)
T ss_dssp CGGGSTT
T ss_pred ecCCCCc
Confidence 9999843
No 54
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.44 E-value=6.8e-13 Score=131.88 Aligned_cols=177 Identities=12% Similarity=0.172 Sum_probs=118.5
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
.|++++ .++++++.+.||..+.+.|.+ .+||+|++. .+. +.+++.+. ...++||+|+||..+. .
T Consensus 97 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp~~g~---g 163 (451)
T 1ulz_A 97 AGITFIGPHWKVIELMGDKARSKEVMKK-------AGVPVVPGSDGVLK-SLEEAKAL--AREIGYPVLLKATAGG---G 163 (451)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCCBCSSSCC-CHHHHHHH--HHHHCSSEEEEECSSS---S
T ss_pred CCCeEECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCCC---C
Confidence 577766 779999999999999999997 589999986 443 22222222 2347899999998633 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEeecCCCcccchhhcccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRFSLPNVSKRELAKVVS 243 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~-~~~R~Slp~~~~~~~~~~~g 243 (346)
|.+|.++.+.+++... ..++++||||+ +++.+.|.++++ ++. +..|.. + +. .....
T Consensus 164 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~~----~~~~~ 236 (451)
T 1ulz_A 164 GRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIE-NPKHIEYQVLGDKHGNVIHLGERDC-S-IQ----RRNQK 236 (451)
T ss_dssp CCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEEE-E-EE----ETTEE
T ss_pred CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccc-CCeEEEEEEEEcCCCCEEEEeeeec-c-cc----ccccc
Confidence 7899999999887542 46899999996 348899988864 343 332211 0 00 00000
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.+. . .+. .+++ ...+.+.++|.++.++||+. ++++|++++. +| ++||+|||.-|+-.
T Consensus 237 ~~~---------~-~P~~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 237 LVE---------I-APSLILTP-----EKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQVE 295 (451)
T ss_dssp EEE---------E-ESCSSCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCCTT
T ss_pred cee---------E-CCcccCCH-----HHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CC-CEEEEEeeCCCCcc
Confidence 000 0 011 1111 01346889999999999998 4569999974 33 69999999988743
No 55
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.43 E-value=1e-12 Score=131.08 Aligned_cols=183 Identities=11% Similarity=0.163 Sum_probs=121.8
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEec
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKP 172 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP 172 (346)
+.+..++ .|++++ .++++++.+.||..+.+.|.+ .+||+|++. .+. +.+++.+. ...++||+|+||
T Consensus 96 ~~~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp 164 (461)
T 2dzd_A 96 FAKRCRE-EGIIFIGPNENHLDMFGDKVKARHAAVN-------AGIPVIPGSDGPVD-GLEDVVAF--AEAHGYPIIIKA 164 (461)
T ss_dssp HHHHHHH-TTCEESSCCHHHHHHTTSHHHHHHHHHH-------TTCCBCCBCSSCCS-SHHHHHHH--HHHHCSCEEEEE
T ss_pred HHHHHHH-cCCEEECCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCCcccCcC-CHHHHHHH--HHhcCCcEEEEe
Confidence 3344444 467765 779999999999999999987 589999986 342 22222222 234789999999
Q ss_pred CcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEeecCCCccc
Q 019076 173 LVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRFSLPNVSK 235 (346)
Q Consensus 173 ~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~-~~~R~Slp~~~~ 235 (346)
..+. +|.+|.++.+.++|... ..++++||||+ +++.+.|.++++ ++. ...|.. + .
T Consensus 165 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~-- 236 (461)
T 2dzd_A 165 ALGG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIE-NPKHIEVQILGDYEGNIVHLYERDC-S-V-- 236 (461)
T ss_dssp STTC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCC-SCEEEEEEEEECTTCCEEEEEEEEE-E-E--
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCC-CCeEEEEEEEEcCCCCEEEEEeccc-c-c--
Confidence 8733 57899999999887542 46899999996 347888888864 233 333311 0 0
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~f 313 (346)
......... .. +. .+++ ...+.+.++|.++.+++|+..++ +|++.+. | ++||+|||.-
T Consensus 237 --~~~~~~~~~---------~~-P~~~l~~-----~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~R 296 (461)
T 2dzd_A 237 --QRRHQKVVE---------VA-PSVSLSD-----ELRQRICEAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNPR 296 (461)
T ss_dssp --EETTEEEEE---------EE-SCTTSCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEESS
T ss_pred --cccccceEE---------EC-CcccCCH-----HHHHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEECC
Confidence 000000000 00 11 1111 01356889999999999998766 9999975 3 6999999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
||..
T Consensus 297 ~~~~ 300 (461)
T 2dzd_A 297 IQVE 300 (461)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 8743
No 56
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.42 E-value=1.1e-12 Score=135.32 Aligned_cols=185 Identities=14% Similarity=0.100 Sum_probs=123.3
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE--E--cc---------------------
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--I--TK--------------------- 150 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~--i--~~--------------------- 150 (346)
.+..++ .|++++ .++++++.+.||..+.+.+++ .|||+|++.. + ..
T Consensus 157 a~~le~-~Gi~~iGp~~~ai~~~~DK~~ak~ll~~-------aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (587)
T 3jrx_A 157 PELLCK-NGVAFLGPPSEAMWALGDKIASTVVAQT-------LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKG 228 (587)
T ss_dssp HHHHHT-TTCEESSCCHHHHHHHCSHHHHHHHHHH-------TTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTT
T ss_pred HHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHH-------cCCCCCCeecccccccccccccccccccccchhhcccc
Confidence 344443 578888 899999999999999999987 5889998764 0 00
Q ss_pred CCCChhhHH-HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC
Q 019076 151 DSLSIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 151 ~~~~~~~~l-~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
...+..+.. ....++||+|+||..++ +|.+|.++.++++|.+. +.++++|+||+ +++.+-|-|++|
T Consensus 229 ~v~s~eea~~~a~~iGyPvVVKp~~Gg---GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~-g~rei~V~vl~D 304 (587)
T 3jrx_A 229 CVKDVDEGLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILAD 304 (587)
T ss_dssp SCCSHHHHHHHHHHHCSSEEEEETTCC---SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEEC
T ss_pred ccCCHHHHHHHHHhcCCeEEEEeCCCC---CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEc
Confidence 011111111 22458999999998633 57899999999987653 46899999996 249999999986
Q ss_pred E---E-EEEEee-cCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEE
Q 019076 221 T---I-KVVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNI 293 (346)
Q Consensus 221 ~---v-~~~~R~-Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGv 293 (346)
. + ....|. |... .+..... .+ ++. +++. ..+.+.++|.++++++|.. .++|
T Consensus 305 ~~G~vv~l~~rd~siqr--------------r~qk~ie--~a-Pa~~l~~~-----~~~~i~~~A~~~a~alGy~G~~~V 362 (587)
T 3jrx_A 305 QYGNAVSLFGRDCSIQR--------------RHQKIVE--EA-PATIAPLA-----IFEFMEQCAIRLAKTVGYVSAGTV 362 (587)
T ss_dssp SSSCEEEEEEEEEEEES--------------SSCEEEE--EE-SCCSSCHH-----HHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCEEEEeeeeccccc--------------cccceeE--ec-CCCCCCHH-----HHHHHHHHHHHHHHHcCCcceeEE
Confidence 4 3 233332 1110 0110000 00 111 1111 1356889999999999996 4559
Q ss_pred EEEEecCcCCeEEEEeccCCCCCC
Q 019076 294 DMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 294 Dvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
|++.+. +| ++|++|||.-|+-.
T Consensus 363 Efl~d~-dG-~~yflEINpRl~~e 384 (587)
T 3jrx_A 363 EYLYSQ-DG-SFHFLELNPRLQVE 384 (587)
T ss_dssp EEEECS-SS-CEEEEEEESSCCTT
T ss_pred EEEEeC-CC-CEEEEEEeCCCCCc
Confidence 999974 34 69999999999853
No 57
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.41 E-value=1.5e-12 Score=129.64 Aligned_cols=182 Identities=10% Similarity=0.037 Sum_probs=114.3
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCc-EEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fP-vVvKP~~a~GS~~s 181 (346)
.|++++ .++++++.+.||..+.+.|++ .+||+|++..+. +.+++.+. ...++|| +|+||..+. +|
T Consensus 111 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvvKp~~~~---gg 177 (452)
T 2qk4_A 111 AGVQCFGPTAEAAQLESSKRFAKEFMDR-------HGIPTAQWKAFT-KPEEACSF--ILSADFPALVVKASGLA---AG 177 (452)
T ss_dssp TTCCEESCCTTTTHHHHBHHHHHHHHHH-------TTCCBCCEEEES-SHHHHHHH--HHHCSSCEEEEEESBC------
T ss_pred cCCcEeCcCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEEC-CHHHHHHH--HHhCCCCeEEEEeCCCC---CC
Confidence 478887 889999999999999999987 589999999875 22223222 2358999 999998633 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEEC--CEEEEE--EeecCCCcccchhhcccce
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIG--ETIKVV--RRFSLPNVSKRELAKVVSV 244 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG--~~v~~~--~R~Slp~~~~~~~~~~~g~ 244 (346)
.+|.++.+.+++.+. ..++++||||+ |..+.|.+++ +.+..+ .|..-... +.. .+.
T Consensus 178 ~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~~~~---~~~--~~~ 250 (452)
T 2qk4_A 178 KGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFTDGKTVAPMPPAQDHKRLL---EGD--GGP 250 (452)
T ss_dssp CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEECSSCEEECCCBEEEEEEE---TTT--EEE
T ss_pred CCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEECCCEEEEcceeeeccccc---CCC--CCC
Confidence 899999999887542 25899999996 8999998883 333321 11100000 000 000
Q ss_pred eecccccccccccCCCC-CCCCCCCCCChHHHH-HHHHHHHHHh---CC---cEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 245 FRFPRVSSAAASADDAD-LDPGIAELPPRPLLE-RLARELRHRL---GL---RLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 245 ~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~-~lA~~l~~~l---Gl---~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
++.. . +.. .+.. +++. ..+.+. ++|.++.++| |+ .++++|++++. + ++||+|||.-||-
T Consensus 251 -~~g~--~-~~~-~P~~~l~~~-----~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~--g~~viEiN~R~~~ 317 (452)
T 2qk4_A 251 -NTGG--M-GAY-CPAPQVSND-----LLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-N--GPKVLEFNCRFGD 317 (452)
T ss_dssp -EEEE--E-EEE-ESCTTCCHH-----HHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-T--EEEEEEEESSCCT
T ss_pred -CCCC--c-eee-ccCccCCHH-----HHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-C--CcEEEEEeccCCC
Confidence 0000 0 000 0111 1110 022343 6777888776 44 46789999975 2 4999999999995
Q ss_pred CC
Q 019076 317 GK 318 (346)
Q Consensus 317 ~g 318 (346)
.+
T Consensus 318 ~~ 319 (452)
T 2qk4_A 318 PE 319 (452)
T ss_dssp TT
T ss_pred cH
Confidence 43
No 58
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.41 E-value=1.7e-12 Score=132.79 Aligned_cols=185 Identities=14% Similarity=0.096 Sum_probs=116.9
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE--E--cc---------------------
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--I--TK--------------------- 150 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~--i--~~--------------------- 150 (346)
.+..++ .|++++ .++++++.+.||..+.+.+.+ .|||+|++.. + ..
T Consensus 141 a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~ll~~-------~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (540)
T 3glk_A 141 PELLCK-NGVAFLGPPSEAMWALGDKIASTVVAQT-------LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKG 212 (540)
T ss_dssp HHHHHH-TTCEESSCCHHHHC---CHHHHHHHHHH-------TTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHT
T ss_pred HHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHHHH-------cCCCCCCccccccccccccccccccccccccccccccc
Confidence 334444 578888 899999999999999999987 5899998764 0 00
Q ss_pred CCCChhhHH-HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC
Q 019076 151 DSLSIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 151 ~~~~~~~~l-~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
...+..+.. ....++||+|+||..++ +|.+|.++.++++|.+. +.++++||||+ +++.+-|-|++|
T Consensus 213 ~v~s~~ea~~~a~~igyPvVVKp~~gg---GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~-g~rei~V~vl~d 288 (540)
T 3glk_A 213 CVKDVDEGLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILAD 288 (540)
T ss_dssp SCCSHHHHHHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS-SEEEEEEEEEEC
T ss_pred CcCCHHHHHHHHHhcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEc
Confidence 011111111 22458999999998633 57899999999987653 46899999995 238999999976
Q ss_pred E---EE-EEEee-cCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEE
Q 019076 221 T---IK-VVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNI 293 (346)
Q Consensus 221 ~---v~-~~~R~-Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGv 293 (346)
. +. ...|. +... .+..... .+ ++. +++ ...+.+.++|.++++++|+. .++|
T Consensus 289 ~~G~vv~l~~rd~s~qr--------------~~~k~ie--~~-Pa~~l~~-----~~~~~l~~~a~~~~~alG~~G~~~V 346 (540)
T 3glk_A 289 QYGNAVSLFGRDCSIQR--------------RHQKIVE--EA-PATIAPL-----AIFEFMEQCAIRLAKTVGYVSAGTV 346 (540)
T ss_dssp TTSCEEEEEEEEEEEC-----------------CCSEE--EE-SCTTSCH-----HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCEEEEeceeeeeee--------------cccceEE--ec-CCCCCCH-----HHHHHHHHHHHHHHHHcCCccceEE
Confidence 3 32 33332 2111 0110000 00 111 111 11356889999999999995 5569
Q ss_pred EEEEecCcCCeEEEEeccCCCCCC
Q 019076 294 DMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 294 Dvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
|++.+. +| ++|++|||.-|+-.
T Consensus 347 Ef~~d~-dg-~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 347 EYLYSQ-DG-SFHFLELNPRLQVE 368 (540)
T ss_dssp EEEEET-TS-CEEEEEEECSCCTT
T ss_pred EEEEcC-CC-CEEEEEEECCCCCc
Confidence 999975 34 69999999999854
No 59
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.41 E-value=3.1e-12 Score=127.05 Aligned_cols=182 Identities=11% Similarity=0.181 Sum_probs=120.6
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCh-hhHHHhhCCCCcEEEec
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSI-PDQVFEAGLKLPLVAKP 172 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~-~~~l~~~~l~fPvVvKP 172 (346)
.+..++ .|++++ .++++++.+.||..+.+.|.+ .+||+|++. .+. +.+++ .+. ...++||+|+||
T Consensus 92 ~~~~e~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~-~~~~~~~~~--~~~~g~PvvvKp 160 (449)
T 2w70_A 92 AEQVER-SGFIFIGPKAETIRLMGDKVSAIAAMKK-------AGVPCVPGSDGPLG-DDMDKNRAI--AKRIGYPVIIKA 160 (449)
T ss_dssp HHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------HTCCBCSBCSSCCC-SCHHHHHHH--HHHHCSSEEEEE
T ss_pred HHHHHH-cCCceECCCHHHHHHhcCHHHHHHHHHH-------cCCCcCCCcccccC-CHHHHHHHH--HHHhCCcEEEEE
Confidence 334443 467765 579999999999999999997 489999986 443 33322 222 234789999999
Q ss_pred CcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEeecCCCccc
Q 019076 173 LVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRFSLPNVSK 235 (346)
Q Consensus 173 ~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~-~~~R~Slp~~~~ 235 (346)
..+. +|.+|.++.+.+++... +.++++||||+ +++.+.|.++++ ++. ...|.. . ..
T Consensus 161 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~~~~~~~G~~~~~~~~~~-~-~~- 233 (449)
T 2w70_A 161 SGGG---GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLE-NPRHVEIQVLADGQGNAIYLAERDC-S-MQ- 233 (449)
T ss_dssp TTCC---TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEE-E-EE-
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccC-CCeEEEEEEEEcCCCCEEEEeceec-c-cc-
Confidence 8733 57899999999887542 46899999996 348899888853 343 333311 0 00
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
........ . .+. .+++. ..+.+.++|.++.++||+. ++++|++.+. | ++||+|||.-
T Consensus 234 ---~~~~~~~~---------~-~p~~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R 292 (449)
T 2w70_A 234 ---RRHQKVVE---------E-APAPGITPE-----LRRYIGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTR 292 (449)
T ss_dssp ---ETTEEEEE---------E-ESCTTCCHH-----HHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECS
T ss_pred ---cCCcceee---------e-CCcccCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECC
Confidence 00000000 0 011 12110 1356889999999999986 4669999975 3 7999999998
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
|+-.
T Consensus 293 ~~~~ 296 (449)
T 2w70_A 293 IQVE 296 (449)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 8743
No 60
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.34 E-value=6.8e-12 Score=128.54 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=116.0
Q ss_pred eeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-----ccC-----------------CCChhhHH-Hh
Q 019076 106 VTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-----TKD-----------------SLSIPDQV-FE 161 (346)
Q Consensus 106 v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-----~~~-----------------~~~~~~~l-~~ 161 (346)
+.++ .++++++.+.||..+.+.+++ .+||+|++..+ ..+ ..+..+.. ..
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQS-------AKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHH-------TTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHH-------CCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 5554 557799999999999999987 58899987543 000 01222211 12
Q ss_pred hCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEee
Q 019076 162 AGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRF 228 (346)
Q Consensus 162 ~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~---~v~-~~~R~ 228 (346)
..++||+|+||..+. +|.+|.++.++++|... ..++++||||+ +|+.+.|.++++ ++. ...|.
T Consensus 231 ~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~-g~~e~sv~vl~d~~G~vv~l~~~~ 306 (554)
T 1w96_A 231 KRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISLFGRD 306 (554)
T ss_dssp HHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeee
Confidence 357899999998633 57899999999887642 46899999997 468899988865 333 22331
Q ss_pred -cCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeE
Q 019076 229 -SLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVF 305 (346)
Q Consensus 229 -Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~ 305 (346)
+..+. ...... . . +.. +++ ...+.+.++|.++.++||+ +.+++|++++..+| ++
T Consensus 307 ~~~~~~-------~~k~~~---~------~-P~~~l~~-----~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg-~~ 363 (554)
T 1w96_A 307 CSVQRR-------HQKIIE---E------A-PVTIAKA-----ETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-KF 363 (554)
T ss_dssp EEEEET-------TEEEEE---E------E-SCCSSCH-----HHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-CE
T ss_pred eeeEee-------ccceee---e------C-CCcCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CE
Confidence 11100 000000 0 0 011 111 0135688999999999999 56679999962233 69
Q ss_pred EEEeccCCCCCC
Q 019076 306 YVIDINYFPGYG 317 (346)
Q Consensus 306 ~ViDVN~fPg~~ 317 (346)
||+|||.-+|-.
T Consensus 364 ~~iEiN~R~~g~ 375 (554)
T 1w96_A 364 YFLELNPRLQVE 375 (554)
T ss_dssp EEEEEECSCCTT
T ss_pred EEEEeeCCCCcc
Confidence 999999988754
No 61
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.33 E-value=3e-11 Score=133.14 Aligned_cols=181 Identities=11% Similarity=0.172 Sum_probs=117.6
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+..++ -|++++ .++++++.+.||..+.+.+.+ ++||+|++. .+. +.+++.+ ....++||+|+||.
T Consensus 95 a~~le~-~Gi~~iGp~~eai~~~~DK~~~r~ll~~-------aGIPvpp~~~~~v~-s~eea~~--~a~~iGyPvVVKP~ 163 (1150)
T 3hbl_A 95 ARRCAE-EGIKFIGPHLEHLDMFGDKVKARTTAIK-------ADLPVIPGTDGPIK-SYELAKE--FAEEAGFPLMIKAT 163 (1150)
T ss_dssp HHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCCBCSSCBC-SSSTTTT--TGGGTCSSEEEECC
T ss_pred HHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCccccCCC-CHHHHHH--HHHHcCCCEEEEeC
Confidence 334444 477777 889999999999999999987 589999987 443 3333323 23468999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCccc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSK 235 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~ 235 (346)
.++ +|.+|.++.++++|... +.++++||||+ +.+.+-|-|+++. +....|. |...
T Consensus 164 ~Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~-G~reieV~vl~d~~G~vv~l~er~~s~qr--- 236 (1150)
T 3hbl_A 164 SGG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYID-NPKHIEVQVIGDEHGNIVHLFERDCSVQR--- 236 (1150)
T ss_dssp C----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCS-SCEEEEEEEEECSSSCEEEEEEEEEEEES---
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccC-CCcEEEEEEEEeCCCCEEEEEeeccceec---
Confidence 633 57899999999887542 35799999996 2388888888763 3333332 1110
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~f 313 (346)
. +... ...+ +. .+++. ..+.+.++|.++.+++|+.-+| +|++.+.+ ++|+||||.-
T Consensus 237 -----~------~~k~--~e~~-Pa~~l~~~-----~~~~l~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINpR 294 (1150)
T 3hbl_A 237 -----R------HQKV--VEVA-PSVGLSPT-----LRQRICDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNPR 294 (1150)
T ss_dssp -----S------SCEE--EEES-SCSSCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEECS
T ss_pred -----c------Ccee--EEec-CCCCCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeCC
Confidence 0 0000 0000 11 11111 1356889999999999987655 99999753 6999999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
++-.
T Consensus 295 ~~g~ 298 (1150)
T 3hbl_A 295 VQVE 298 (1150)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9843
No 62
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.33 E-value=4e-12 Score=133.30 Aligned_cols=176 Identities=13% Similarity=0.157 Sum_probs=116.0
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
.|++++ .++++++.+.||..+.+.+.+ .+||+|++... ..+.+++.+ ....++||+|+||..++ +|
T Consensus 124 ~Gi~~iGp~~~ai~~~~DK~~~k~~l~~-------~GVpvpp~~~~~~~s~~e~~~--~a~~igyPvvvKp~~G~---Gg 191 (675)
T 3u9t_A 124 AGLLFLGPPAAAIDAMGSKSAAKALMEE-------AGVPLVPGYHGEAQDLETFRR--EAGRIGYPVLLKAAAGG---GG 191 (675)
T ss_dssp TTCEESSCCHHHHHHHTSHHHHHHHHHH-------TTCCBCCCCCSCCCCTTHHHH--HHHHSCSSBCCBCCC-------
T ss_pred cCCceeCCCHHHHHHhchHHHHHHHHHH-------cCcCcCCccccCCCCHHHHHH--HHHhCCCcEEEEECCCC---CC
Confidence 467776 789999999999999999987 58999997642 123333333 23458999999998633 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EE-EEEEee-cCCCcccchhhcccc
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TI-KVVRRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v-~~~~R~-Slp~~~~~~~~~~~g 243 (346)
.+|.++.++++|.+. +.++++||||+. .+.+-|-|+++ ++ ....|. |....
T Consensus 192 ~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g-~reiev~v~~d~~G~vv~l~~rd~s~qr~---------- 260 (675)
T 3u9t_A 192 KGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLK-PRHVEIQVFADRHGHCLYLNERDCSIQRR---------- 260 (675)
T ss_dssp --CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSS-CBCEEEEEEECSSSCEEEEEEEECCCBSS----------
T ss_pred ccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCC-CcEEEEEEEEcCCCCEEEEeccccceeec----------
Confidence 899999999887642 357999999962 37788888765 33 334442 22110
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 244 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
++..- ..+ +. .+++. ..+.+.++|.++.+++|+ +.+++|++.+. +| ++|++|||.-|+-
T Consensus 261 ----~qk~i--e~~-Pa~~l~~~-----~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG-~~~~iEiNpR~~~ 321 (675)
T 3u9t_A 261 ----HQKVV--EEA-PAPGLGAE-----LRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RG-QFFFMEMNTRLQV 321 (675)
T ss_dssp ----SSBCE--EEE-SCSSCCHH-----HHHHHHHHHHHHHHHTTCCSEEEEECCBCT-TS-CBCBCEEESSCCT
T ss_pred ----cceEE--EEC-CCCCCCHH-----HHHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEeccccccC
Confidence 00000 000 10 11110 135688999999999999 56779999875 34 6999999999974
No 63
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.31 E-value=4.1e-12 Score=133.35 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=85.7
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+..++ -|++++ .++++++.+.||..+.+.+.+ .+||+|++. .+. +.+++.+ ....++||+|+||.
T Consensus 92 a~~le~-~Gi~~iGp~~~ai~~~~dK~~~k~~l~~-------~GVPvpp~~~~~~~-s~~e~~~--~a~~igyPvVvKp~ 160 (681)
T 3n6r_A 92 AEALEA-EGVIFVGPPKGAIEAMGDKITSKKIAQE-------ANVSTVPGYMGLIE-DADEAVK--ISNQIGYPVMIKAS 160 (681)
T ss_dssp HHHHHT-TTCCCSSSCHHHHHHTTSHHHHHHHHHT-------TTCCCCCC------------------------------
T ss_pred HHHHHH-cCCceECCCHHHHHHhCCHHHHHHHHHH-------cCcCcCCccccCcC-CHHHHHH--HHHhcCCcEEEEEC
Confidence 344444 478877 789999999999999999986 589999975 333 3333323 23468999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCccc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSK 235 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~ 235 (346)
. |+ +|.+|.++.++++|... +.++++||||+ +++.+-|.|++|. +....|. |...
T Consensus 161 ~--gg-ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~-g~rei~V~v~~d~~G~vv~l~~rd~s~qr--- 233 (681)
T 3n6r_A 161 A--GG-GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVT-QPRHIEIQVLCDSHGNGIYLGERECSIQR--- 233 (681)
T ss_dssp ---------------------------------------------CC-SCEEEEEEEECCSSSCCEEEEEEECCCEE---
T ss_pred C--CC-CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccC-CCcEEEEEEEEeCCCCEEEEeeeecceec---
Confidence 6 33 57899999999887653 24799999996 2489999999764 2333332 2210
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
.++... ..+ +. .+++. ..+.+.++|.++.+++|+. .+++|++.+. +| ++|++|||.-
T Consensus 234 -----------~~~k~~--e~~-Pa~~l~~~-----~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg-~~~~lEiNpR 292 (681)
T 3n6r_A 234 -----------RNQKVV--EEA-PSPFLDEA-----TRRAMGEQAVALAKAVGYASAGTVEFIVDG-QK-NFYFLEMNTR 292 (681)
T ss_dssp -----------TTEECE--EEE-SCSSCCHH-----HHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TS-CCCCCEEECS
T ss_pred -----------cCccEE--Eec-CCCCCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CC-CEEEEecccc
Confidence 000000 000 11 12111 1356789999999999996 4459999985 34 6999999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
|+-.
T Consensus 293 ~~~~ 296 (681)
T 3n6r_A 293 LQVE 296 (681)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9744
No 64
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.29 E-value=3.5e-11 Score=133.21 Aligned_cols=183 Identities=17% Similarity=0.232 Sum_probs=82.8
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcE-EEEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQ-MVITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~-~~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
+.+..++ .|++++ .++++++.+.||..+.+.+.+ ++||+|+. .++. +.+++.+ ....++||+|+||.
T Consensus 120 ~a~~le~-~Gi~~iGps~eai~~~~DK~~ak~ll~~-------aGIPvpp~~~~v~-s~eea~~--~a~~iGyPvVVKP~ 188 (1236)
T 3va7_A 120 FSDRCSQ-ENIVFVGPSGDAIRKLGLKHSAREIAER-------AKVPLVPGSGLIK-DAKEAKE--VAKKLEYPVMVKST 188 (1236)
T ss_dssp HHHHHHT-TTCEESSCCHHHHHHHHSTTHHHHHHHH-------TTCCCCC------------------------------
T ss_pred HHHHHHH-CCCCeeCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeeEecC-CHHHHHH--HHHHcCCCEEEEeC
Confidence 3344443 577776 888999999999999999987 58999884 4443 3333323 23468999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEee-cCCCccc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSK 235 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~-~~R~-Slp~~~~ 235 (346)
. |+ +|.+|.++.++++|.+. +.++++||||+ +++.+.|.|++|. +.. ..|. |...
T Consensus 189 ~--Gg-GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~-G~rEisV~vl~Dg~g~vv~l~~rd~s~qr--- 261 (1236)
T 3va7_A 189 A--GG-GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN-NARHVEIQMMGDGFGKAIAIGERDCSLQR--- 261 (1236)
T ss_dssp ------------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEEE---
T ss_pred C--CC-CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC-CCeEEEEEEEecCCceEEEEeeeeeeeee---
Confidence 6 33 57899999999887642 24699999996 2489999988753 322 2221 1100
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
.+... ...+ +. .+++. ..+.+.++|.++.+++|+. .++||++.+..++ ++|+||||.-
T Consensus 262 -----------~~~k~--~e~~-Pa~~l~~~-----~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpR 321 (1236)
T 3va7_A 262 -----------RNQKV--IEET-PAPNLPEA-----TRAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNAR 321 (1236)
T ss_dssp -----------TTEEE--EEEE-SCSSCCHH-----HHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECS
T ss_pred -----------cCcce--EEEc-CCCCCCHH-----HHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECC
Confidence 00000 0000 11 12111 1356889999999999996 6679999985334 7999999998
Q ss_pred CCC
Q 019076 314 PGY 316 (346)
Q Consensus 314 Pg~ 316 (346)
++-
T Consensus 322 l~g 324 (1236)
T 3va7_A 322 LQV 324 (1236)
T ss_dssp CCT
T ss_pred CCC
Confidence 863
No 65
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.23 E-value=3e-11 Score=133.32 Aligned_cols=183 Identities=16% Similarity=0.173 Sum_probs=85.7
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+..++ .|++++ .++++++.+.||..+.+.+.+ .+||+|++. .+. +.+++.+. ...++||+|+||.
T Consensus 111 a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~-------~GIPvp~~~~~~v~-s~eea~~~--a~~igyPvVVKp~ 179 (1165)
T 2qf7_A 111 VDACNK-AGIIFIGPKADTMRQLGNKVAARNLAIS-------VGVPVVPATEPLPD-DMAEVAKM--AAAIGYPVMLKAS 179 (1165)
T ss_dssp HHHHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHH-------TTCCBC--------------------------------
T ss_pred HHHHHH-cCCceECCCHHHHHHHCCHHHHHHHHHH-------cCCCCCCeeCcCCC-CHHHHHHH--HHhcCCCEEEEeC
Confidence 333333 467775 678999999999999999987 589999987 443 33333221 2458999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEee-cCCCccc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSK 235 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~-~~~R~-Slp~~~~ 235 (346)
.+. +|.+|.++.++++|.+. +.++++||||+ +|+.+.|.+++|. +. ...|. +..
T Consensus 180 ~g~---GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~-gg~EisV~vl~D~~G~vv~l~~r~~s~~---- 251 (1165)
T 2qf7_A 180 WGG---GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVE-RARHVESQILGDTHGNVVHLFERDCSVQ---- 251 (1165)
T ss_dssp -------------------------------------------CCCS-SEEEEEEEEEECTTSCEEEEEEEEEEEE----
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecc-CCcEEEEEEEEcCCCcEEEEEeecccce----
Confidence 633 57899999999887642 25799999997 4789999998763 33 23331 110
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lf-GvDvi~~~~~g~~~~ViDVN~f 313 (346)
........ .+ +. .+++. ..+.+.++|.++.+++|+.-+ ++|++++..+| ++|+||||.-
T Consensus 252 ---r~~~~~~e---------~~-Pa~~l~~~-----~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~~~iEiNpR 312 (1165)
T 2qf7_A 252 ---RRNQKVVE---------RA-PAPYLSEA-----QRQELAAYSLKIAGATNYIGAGTVEYLMDADTG-KFYFIEVNPR 312 (1165)
T ss_dssp ---ETTEEEEE---------EE-SCTTCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECS
T ss_pred ---ecccceEE---------ec-ccccCCHH-----HHHHHHHHHHHHHHHcCCCcceeEEEEEECCCC-CEEEEEEEcC
Confidence 00000000 00 11 11110 135678999999999999854 59999982234 7999999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
+|..
T Consensus 313 ~~~~ 316 (1165)
T 2qf7_A 313 IQVE 316 (1165)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9853
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=98.91 E-value=1.4e-08 Score=97.29 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=95.1
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
..++++..+.+++....||...-+.|.+ .|||+|+++. .+++ .++||+|+||.. |+ +|+
T Consensus 81 ~~~~p~~p~~~~l~~~~dr~~~~~~l~~-------~Gip~P~~~~----~ee~-------~i~~PviVKp~~--g~-ggk 139 (320)
T 2pbz_A 81 KAKARFFGNRRFLKWETTFELQDKALEG-------AGIPRVEVVE----PEDA-------KPDELYFVRIEG--PR-GGS 139 (320)
T ss_dssp TCCSCCBSCSSGGGGGSCHHHHHHHHHH-------HTCCBCCBCC----SCCC-------CSSCCEEEECC---------
T ss_pred HcCCCcCCCHHHHHHHHhHHHHHHHHHH-------CCcCCCCeeC----HhHc-------CcCCcEEEEECC--CC-CCC
Confidence 5678899999999999999877788886 4899999872 2221 489999999987 55 689
Q ss_pred eeEEEeChhhhhcc----CCCeEEEecccCCCeEEEE--E--EECCEEE-EEEeecCCCcccchhhcccceeecccc---
Q 019076 183 ELFLAYDRFSLSEL----EPPMLLQEFVNHGGILFKI--Y--IIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRV--- 250 (346)
Q Consensus 183 ~m~lv~~~~~L~~l----~~p~v~QEfI~h~G~~~KV--~--VvG~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~v--- 250 (346)
|+.++.+ ++|... ..++++||||+ |..+-+ | ++-+++. +..+.-+.+. +|.+..+.+
T Consensus 140 G~~~v~~-eel~~~~~~~~~~~IiEEfI~--g~~~~~~~f~~~~~g~~e~~~~~~r~e~~--------~g~~~~p~~~~~ 208 (320)
T 2pbz_A 140 GHFIVEG-SELEERLSTLEEPYRVERFIP--GVYLYVHFFYSPILERLELLGVDERVLIA--------DGNARWPVKPLP 208 (320)
T ss_dssp ------C-EECSCCCC----CCEEEECCC--SCEEEEEEEEETTTTEEEEEEEEEEEETT--------CSSSSSCCSCCC
T ss_pred CEEEECh-HHHHHHHHhcCCCEEEEeeec--eEecceeEEeccccCceeEEEecceEEEE--------CCeeecccCCCc
Confidence 9999999 998754 25899999997 554431 1 1222322 1111111110 111111000
Q ss_pred -cccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh------C-CcEeEEEEEEecCcCCeEEEEeccCC-CC
Q 019076 251 -SSAAASADDADLDPGIAELPPRPLLERLARELRHRL------G-LRLFNIDMIREHGMRDVFYVIDINYF-PG 315 (346)
Q Consensus 251 -s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l------G-l~lfGvDvi~~~~~g~~~~ViDVN~f-Pg 315 (346)
+-.+.. +..+++ ...+.+.++|.++.++| | ...+++| + .. +| +++|+|||.= +|
T Consensus 209 ~~~~G~~--P~~~~~-----~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~-~~-dg-~~~v~EIapR~~G 271 (320)
T 2pbz_A 209 YTIVGNR--AIALRE-----SLLPQLYDYGLAFVRTMRELEPPGVIGPFALH-F-AY-DG-SFKAIGIASRIDG 271 (320)
T ss_dssp CCEEEEE--ECEECG-----GGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-E-EC-SS-SCEEEEEESSBCS
T ss_pred eeeecCC--CCccCH-----HHHHHHHHHHHHHHHHHHhhccCCceeeEEEE-E-cC-CC-cEEEEEecCCCCC
Confidence 000000 111111 12456889999999998 4 5677899 5 32 23 6899999995 44
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.83 E-value=8.2e-08 Score=93.44 Aligned_cols=177 Identities=12% Similarity=0.150 Sum_probs=102.3
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
..++++.-+..+++...||...-+.|.+ ++||||+++ . +.+ .++||+|+||.. | +.++
T Consensus 107 ~~g~~v~g~~~a~~~e~~k~~~k~~l~~-------~GIptp~~~--~-~~~---------e~~~PvVVK~~~--~-a~Gk 164 (361)
T 2r7k_A 107 SFLVPMFGNRRILRWESERSLEGKLLRE-------AGLRVPKKY--E-SPE---------DIDGTVIVKFPG--A-RGGR 164 (361)
T ss_dssp TCCSCBBSCGGGGGTTTCHHHHHHHHHH-------TTCCCCCEE--S-SGG---------GCCSCEEEECSC--C-CC--
T ss_pred HcCCCcCCCHHHHHHhhhHHHHHHHHHH-------cCcCCCCEe--C-CHH---------HcCCCEEEeeCC--C-CCCC
Confidence 4567777777777778888877777776 589999862 2 211 236899999874 3 3689
Q ss_pred eeEEEeChhhhhcc------------C--CCeEEEecccCCCeEEEE---E-EECCEEE--EEEeecCCC------cccc
Q 019076 183 ELFLAYDRFSLSEL------------E--PPMLLQEFVNHGGILFKI---Y-IIGETIK--VVRRFSLPN------VSKR 236 (346)
Q Consensus 183 ~m~lv~~~~~L~~l------------~--~p~v~QEfI~h~G~~~KV---~-VvG~~v~--~~~R~Slp~------~~~~ 236 (346)
|+.++.+.+++.+. . .++++||||+ |..+-+ | ++++++. .+.++-.-+ +...
T Consensus 165 Gv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~--G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~ 242 (361)
T 2r7k_A 165 GYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV--GTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAK 242 (361)
T ss_dssp -EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC--SEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHH
T ss_pred CEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc--eEEeeEEEEecccCCeeEEEEecceEEeecccceecchh
Confidence 99999999887542 1 4699999996 666542 1 1244322 222220000 0000
Q ss_pred hhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh-------CCcEeEEEEEEecCcCCeEEEEe
Q 019076 237 ELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-------GLRLFNIDMIREHGMRDVFYVID 309 (346)
Q Consensus 237 ~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-------Gl~lfGvDvi~~~~~g~~~~ViD 309 (346)
+.... +.. +..+-.+.. +..+++. ..+.+.++|.++.++| ....++++++++. +| +++|+|
T Consensus 243 ~~~~~-~~~--p~~v~~G~~--Pa~l~~~-----~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg-~i~V~E 310 (361)
T 2r7k_A 243 DQLEM-NIN--PSYVITGNI--PVVIRES-----LLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NL-ELVVFE 310 (361)
T ss_dssp HHHTC-CCC--CCEEEEEEE--ECCCCGG-----GHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TS-CEEEEE
T ss_pred hhhcc-cCC--CceEEecCc--CCcCCHH-----HHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CC-CEEEEE
Confidence 00000 000 000000000 1122211 2466899999999998 3667789999864 23 689999
Q ss_pred ccCCCC
Q 019076 310 INYFPG 315 (346)
Q Consensus 310 VN~fPg 315 (346)
||.=||
T Consensus 311 IapR~g 316 (361)
T 2r7k_A 311 MSARVD 316 (361)
T ss_dssp EESSBC
T ss_pred EcCCCC
Confidence 999666
No 68
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.9e-11 Score=96.24 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=63.5
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 192 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~ 192 (346)
+..++||..+.++|.+ .+||+|+++ .+. +.+++.+ ....++||+|+||..+. +|.++.++.+.++
T Consensus 3 ~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~-~~~~~~~--~~~~~~~P~vvKp~~~~---~~~gv~~v~~~~e 69 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKK-------AEVNTIPGFDGVVK-DAEEAVR--IAREIGYPVMIKASAGG---GGKGMRIAWDDEE 69 (108)
T ss_dssp CCCCCCCCCSTTCCCS-------SCCCCCSCCCSCBS-SHHHHHH--HHHHHCSSEEEEETTSC---CTTTCEEESSHHH
T ss_pred hhhhcCHHHHHHHHHH-------cCCCCCCCcccccC-CHHHHHH--HHHhcCCCEEEEECCCC---CCccEEEeCCHHH
Confidence 3456788777666664 689999987 553 2222222 12357999999999733 4679999999988
Q ss_pred hhcc-------------CCCeEEEecccCCCeEEEEEEEC
Q 019076 193 LSEL-------------EPPMLLQEFVNHGGILFKIYIIG 219 (346)
Q Consensus 193 L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG 219 (346)
|... ..++++||||+. .+.+.|.|+|
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 70 TRDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 7542 367999999962 3577777766
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.39 E-value=2.3e-06 Score=83.57 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=81.2
Q ss_pred CCccEEEEcccchhhHHHHHHHHHhCCC-eeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCC---
Q 019076 78 GPFDVVLHKLSGMEWCKIIEDYRQKHPE-VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDS--- 152 (346)
Q Consensus 78 ~~fDvilhK~t~~~~~~~l~~y~~~~p~-v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~--- 152 (346)
..||++..-....-+.. +..+|+ .-.||-......+..|..+...+++.. ......=..|+|+++ ..+-
T Consensus 38 ~~~dl~W~~~~~~p~~~-----l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~~~~~f~P~ty~L~P~~~~~p 111 (380)
T 3tig_A 38 PKFNLMLGERNRLPFGR-----LGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-ELTETCTWFPESYVIYPTNEKTP 111 (380)
T ss_dssp SCCSEEECCSSSCCGGG-----SSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHHTTCTTSCCEEECCC------
T ss_pred CceeEEEecCCCCCHHH-----hccCCCcceEEeecCCcccccccHHHHHHHHHhh-hcccccCcCCcceeeCccccccc
Confidence 36888886432211200 112355 357888888899999998888886521 000112357888877 2210
Q ss_pred -----------------CChhhHH------HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc----CCCeEEEec
Q 019076 153 -----------------LSIPDQV------FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL----EPPMLLQEF 205 (346)
Q Consensus 153 -----------------~~~~~~l------~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l----~~p~v~QEf 205 (346)
++..+.+ ...+-+.++|+||.. || .+.|+.++.+.+++.++ ..++|+|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~--~s-rG~GI~l~~~~~~i~~~~~~~~~~~VvQkY 188 (380)
T 3tig_A 112 AMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSS--GA-KGEGILISSDATELLDFIDNQGQVHVIQKY 188 (380)
T ss_dssp ------------------CCHHHHHHHHHHHHTTCCCCEEEEESC--C-----CCBCCSCSHHHHHHHHHHTSCEEEEEC
T ss_pred cccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCc--cC-CCCCEEEeCCHHHHHHHHhccCCcEEEEec
Confidence 1111111 124567899999986 54 78999999998887653 578999999
Q ss_pred ccC------CCe--EEEEEEE
Q 019076 206 VNH------GGI--LFKIYII 218 (346)
Q Consensus 206 I~h------~G~--~~KV~Vv 218 (346)
|.. +|+ |+|+||+
T Consensus 189 I~~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 189 LESPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp CSSBCCBTTTTBCEEEEEEEE
T ss_pred ccCceeecCCCceeEEEEEEE
Confidence 986 564 8899998
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.25 E-value=5.8e-07 Score=81.98 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=67.9
Q ss_pred hcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCC--CCCCceeeEE-EeChhhhh
Q 019076 118 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD--GSAKSHELFL-AYDRFSLS 194 (346)
Q Consensus 118 l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~--GS~~sh~m~l-v~~~~~L~ 194 (346)
.+||..+.++|.+ .|||+|++.++.+ .++..+ ....++||+|+||...+ |-..+.++.+ +.+.+++.
T Consensus 19 ~l~k~~~k~ll~~-------~GIp~p~~~~~~~-~~ea~~--~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKA-------YGLPVPEEKLAKT-LDEALE--YAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHT-------TTCCCCCCEEESS-HHHHHH--HHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHH-------cCcCCCCeEEeCC-HHHHHH--HHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 4799999999986 6999999998853 222222 23458999999998641 0014677888 79998876
Q ss_pred cc----------------CCCeEEEecccCCCeEEEEEEECCE
Q 019076 195 EL----------------EPPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 195 ~l----------------~~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
+. ...+++||||+ +|+.+-|.+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 42 15799999998 5889988888775
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.43 E-value=0.00018 Score=70.73 Aligned_cols=89 Identities=19% Similarity=0.074 Sum_probs=63.6
Q ss_pred HHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcC-CCCCCceeeEEEeChhhhhcc----
Q 019076 122 QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL---- 196 (346)
Q Consensus 122 ~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l---- 196 (346)
+..-++|++ .|||+|++.++.+ .++..+ ....++||+|+||... .|...+.+|.++.+++++.+.
T Consensus 6 ~~aK~lL~~-------~GIpvp~~~~~~s-~eea~~--aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~ 75 (397)
T 3ufx_B 6 YQAKEILAR-------YGVPVPPGKVAYT-PEEAKR--IAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAI 75 (397)
T ss_dssp HHHHHHHHH-------TTCCCCCEEEESS-HHHHHH--HHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHH-------CCCCCCCeEEECC-HHHHHH--HHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHh
Confidence 345566765 6999999999853 222222 2345789999999862 233356799999998887542
Q ss_pred ---------CCCeEEEecccCCCeEEEEEEECCE
Q 019076 197 ---------EPPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 197 ---------~~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
...+++|||+++ |+.+-|.++.|.
T Consensus 76 ~~~~~~g~~~~~vlVEe~v~~-g~El~vgv~~D~ 108 (397)
T 3ufx_B 76 LGMNIKGLTVKKVLVAEAVDI-AKEYYAGLILDR 108 (397)
T ss_dssp TTCEETTEECCCEEEEECCCE-EEEEEEEEEEET
T ss_pred hhhhccCCccceEEEEEeecC-CeeEEEEEEecC
Confidence 147999999974 888988888776
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.35 E-value=0.00026 Score=69.36 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=65.4
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCc-EEEecCcCC-CCCCceeeEEEeChhhhhcc-
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVD-GSAKSHELFLAYDRFSLSEL- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fP-vVvKP~~a~-GS~~sh~m~lv~~~~~L~~l- 196 (346)
+.+.+-++|.+ ++||+|++.++.+ .++..+ ....++|| +|+||.... |-..+.+|.++.+.+++.+.
T Consensus 4 ~E~~aK~lL~~-------~GIpvp~~~~~~s-~eea~~--aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~ 73 (388)
T 2nu8_B 4 HEYQAKQLFAR-------YGLPAPVGYACTT-PREAEE--AASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFA 73 (388)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEEEESS-HHHHHH--HHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHH-------CCcCCCCeeEECC-HHHHHH--HHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHH
Confidence 45666777876 6999999998853 222222 23458999 999998632 22357799999998876531
Q ss_pred -------------------CCCeEEEecccCCCeEEEEEEECCEE
Q 019076 197 -------------------EPPMLLQEFVNHGGILFKIYIIGETI 222 (346)
Q Consensus 197 -------------------~~p~v~QEfI~h~G~~~KV~VvG~~v 222 (346)
..++++|+|+++ |+.+-|.++.|+.
T Consensus 74 ~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 74 ENWLGKRLVTYQTDANGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp HHHTTSEECCTTSCTTCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred HHHhhhhhhccccCCCCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 136999999974 7888888887763
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.05 E-value=0.00071 Score=66.42 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=62.7
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCC-cEEEecCcCCCC-CCc-------eeeEEEeCh
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGS-AKS-------HELFLAYDR 190 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~f-PvVvKP~~a~GS-~~s-------h~m~lv~~~ 190 (346)
+.+.+-++|.+ .+||+|++.++.+ .++..+ ....++| |+|+||...+|. -.+ .+|.++.+.
T Consensus 4 ~E~~aK~lL~~-------~GIpvp~~~~~~s-~~ea~~--~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~ 73 (395)
T 2fp4_B 4 QEYQSKKLMSD-------NGVKVQRFFVADT-ANEALE--AAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 73 (395)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEEEESS-HHHHHH--HHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCH
T ss_pred CHHHHHHHHHH-------CCcCCCCeEEECC-HHHHHH--HHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCH
Confidence 34556677775 6999999998853 322222 2345899 899999754443 112 569999998
Q ss_pred hhhhcc-----C---------------CCeEEEecccCCCeEEEEEEECCE
Q 019076 191 FSLSEL-----E---------------PPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 191 ~~L~~l-----~---------------~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
+++++. . ..+++|||++ .|+.+-|.++.|+
T Consensus 74 ~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~-~~~E~~v~i~~D~ 123 (395)
T 2fp4_B 74 EVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD-ISRETYLAILMDR 123 (395)
T ss_dssp HHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC-CSEEEEEEEEEET
T ss_pred HHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC-CceeEEEEEEEcc
Confidence 876532 1 2489999997 4888888888776
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=96.60 E-value=0.015 Score=60.19 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=94.6
Q ss_pred hcccccCCcEEEEec-CCCCCC--CCC--------CccEEEEcccchhhH-HHHH---------------------HHHH
Q 019076 55 ILTHTNKGISFVAID-QNRPLS--DQG--------PFDVVLHKLSGMEWC-KIIE---------------------DYRQ 101 (346)
Q Consensus 55 ~~~~~~~Gi~~v~id-~~~~l~--~q~--------~fDvilhK~t~~~~~-~~l~---------------------~y~~ 101 (346)
...+++.|++...++ ++. |. ..| +.|+| -|+..-+|. ..+. ++..
T Consensus 400 ~~~a~eaG~~~~~~~~i~d-l~~~~~G~l~d~dg~~I~~l-fklypwE~m~~~~~~~~~~~~~~~~~~~g~~~~g~~ll~ 477 (619)
T 2io8_A 400 EQALHQAGFETRILRGLDE-LGWDAAGQLIDGEGRLVNCV-WKTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLID 477 (619)
T ss_dssp HHHHHHTTCEEEEEESSTT-CEECSSSCEECTTSCBCCEE-EESSCHHHHHHHHHHC---CCSSCCCCSCCSSCCCCHHH
T ss_pred HHHHHHCCCceEEecchHh-EEECCCCcEECCCCCEeeeE-EecCCHHHHHHHhhhhcccccccccccccCccchHHHHH
Confidence 334559999999998 654 32 112 45555 345543332 1110 2221
Q ss_pred --hCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 102 --KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 102 --~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
+..++.+|+|+.++. +.|| .++.+|.++. + .+. -.+++.+ +... . +... ..|.||+. |.
T Consensus 478 ~l~~~~v~iieP~~~~l-lsNK-ailalLw~l~-p--~hp-~LLpT~f---~~~~--~-l~~~----~yV~KPi~--gR- 538 (619)
T 2io8_A 478 VLLRPEVLVFEPLWTVI-PGNK-AILPILWSLF-P--HHR-YLLDTDF---TVND--E-LVKT----GYAVKPIA--GR- 538 (619)
T ss_dssp HHTCTTCEEESCGGGGT-TTST-THHHHHHHHS-T--TCT-TCCCEES---SCCH--H-HHHH----CEEEEETT--CC-
T ss_pred HHHhCCCEEECHHHHHH-hhhH-HHHHHHHHhC-C--CCC-CCCCeee---cCCc--c-cccC----CEEEccCC--CC-
Confidence 357799999999988 8999 4556666643 1 111 2334442 2211 1 1222 49999998 54
Q ss_pred CceeeEEEeC-hhhhhcc-----CCCeEEEecccCCCeE-----EEEEEECCEEE-EEEeec
Q 019076 180 KSHELFLAYD-RFSLSEL-----EPPMLLQEFVNHGGIL-----FKIYIIGETIK-VVRRFS 229 (346)
Q Consensus 180 ~sh~m~lv~~-~~~L~~l-----~~p~v~QEfI~h~G~~-----~KV~VvG~~v~-~~~R~S 229 (346)
++.+|.++.. .+.+.+. +.++|+|+|++-..++ +-+|+||++.. +..|.+
T Consensus 539 eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 539 CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 7788999876 2222222 4679999999987555 88999999976 467765
No 75
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=91.63 E-value=0.11 Score=51.94 Aligned_cols=141 Identities=16% Similarity=0.293 Sum_probs=74.8
Q ss_pred CCccEEEEcccchhh-------------HHHHHHHHHhCCCeeeeChHHHHHHhcCHHH--HHHHHHhccccCCCCcc-c
Q 019076 78 GPFDVVLHKLSGMEW-------------CKIIEDYRQKHPEVTILDPPDAIKHLHNRQS--MLQDVADLNLSDCNGKV-R 141 (346)
Q Consensus 78 ~~fDvilhK~t~~~~-------------~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~--~~~~L~~l~~~~~~~~I-~ 141 (346)
.+.|+|.-|+.+... ...++.|.+ -+|.++|++.+- .+.||.. .+-.+.+.-+... .-+ .
T Consensus 268 ~~VDVIyRRvdd~~lDpl~~~~dS~lGv~gLl~A~r~--G~V~i~Na~gsg-v~~dKal~a~Lp~l~~~~lgEe-~il~~ 343 (474)
T 3n6x_A 268 KRVDVIYRRIDDDFIDPLSFRPDSMLGVPGLLSVYRN--GGVTLANAVGTG-VADDKDTYIYVPEMIRFYLGEE-PILSN 343 (474)
T ss_dssp EEECEEEECSCGGGSCTTTSCTTCSSSCTTHHHHHHT--TSCEEESCTTTH-HHHSTTTGGGHHHHHHHHHCSC-CSSEE
T ss_pred eEEEEEEEcCCHHhcCccccCCCcccccHHHHHHHHc--CCEEEeCCCchh-hhcCcHHHHHhHHHHHHhCCHh-hhccC
Confidence 379999999965311 135666753 569999999995 7889841 1111111101111 112 3
Q ss_pred cCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEE--eChhhhhcc-----CCC--eEEEecccCC---
Q 019076 142 VPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA--YDRFSLSEL-----EPP--MLLQEFVNHG--- 209 (346)
Q Consensus 142 ~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv--~~~~~L~~l-----~~p--~v~QEfI~h~--- 209 (346)
+|.++ +. +.+.. +.+ .+++. -+|+||.. |+ ++.+|.+- .+.++..++ ..| +|+||+|.-+
T Consensus 344 VpT~~-c~-~~~~~-~~v-l~~l~-~lViKp~~--g~-gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P 415 (474)
T 3n6x_A 344 VPTYQ-LS-KADDL-KYV-LDNLA-ELVVKEVQ--GS-GGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCP 415 (474)
T ss_dssp CCCEE-TT-SHHHH-HHH-HHSGG-GEEEEECC--CE------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEE
T ss_pred CCcee-cC-CHHHH-HHH-Hhchh-heEEEecC--CC-CCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccc
Confidence 45433 32 22222 221 22222 69999987 43 45677652 233444442 467 9999999743
Q ss_pred ----C------eEEEEEEE-CCEEEE----EEeecC
Q 019076 210 ----G------ILFKIYII-GETIKV----VRRFSL 230 (346)
Q Consensus 210 ----G------~~~KV~Vv-G~~v~~----~~R~Sl 230 (346)
| .++|+|++ |+.+.+ ..|-++
T Consensus 416 ~~~~~~~~~r~~dlR~F~~~g~~~~v~pGgltRva~ 451 (474)
T 3n6x_A 416 TLVETGIAPRHVDLRPFVLSGKTVSLVPGALCRVAL 451 (474)
T ss_dssp EEETTEEEEEEEEEECEEEESSSEEECSCCEEEEEC
T ss_pred eeeCCceeeeeEEEEEEEEcCCceEEecceEEEEec
Confidence 2 47888988 654443 455544
No 76
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=89.33 E-value=4.4 Score=42.02 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=79.2
Q ss_pred cccccCCcEEEEec-CCCCCC--C-------C-CCccEEEEcccchhhHHHH-------------------HHHHH--hC
Q 019076 56 LTHTNKGISFVAID-QNRPLS--D-------Q-GPFDVVLHKLSGMEWCKII-------------------EDYRQ--KH 103 (346)
Q Consensus 56 ~~~~~~Gi~~v~id-~~~~l~--~-------q-~~fDvilhK~t~~~~~~~l-------------------~~y~~--~~ 103 (346)
..+++.|++...++ ++. |. + + .+.|++ -|+..-+|...- ..|.. ..
T Consensus 417 ~~a~eaG~~t~~~~~i~d-L~~~~~G~l~D~~g~~Id~l-fKLyPwE~m~~~~~~~~~~~~~~~~g~p~~g~~~~~~l~~ 494 (652)
T 2vob_A 417 QAAEAVGLEGKLCILFDE-FRFDDNGHVVDSDGVRVRNV-WKTWMWESAITDYYAAREERGENWKPSPKDKVRLCDLLLG 494 (652)
T ss_dssp HHHHHTTCEEEEEETTTT-CEECTTSCEECTTSCBCCEE-EECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHHHHHSS
T ss_pred HHHHHCCCcEEEecchhh-eEECCCCcEECCCCcEeeEE-EecCCHHHHHHhhhhcccccccccccCccchhHHHHHHhc
Confidence 33558999999987 653 32 1 2 266776 456654442111 02321 24
Q ss_pred C--CeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 P--EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p--~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
. .+.+|+|+-++. +.|| .++.+|.++.-. +.- .+++. .+... .+... ..|.||+. |- ++
T Consensus 495 ~~~~v~~ieP~wk~L-lsNK-aiLalLW~l~p~---hp~-LLpt~---f~~~~---~~~~~----~yV~KPi~--gR-eG 555 (652)
T 2vob_A 495 DDWEILYFEPMWKVI-PSNK-AILPMIYHNHPE---HPA-ILKAE---YELTD---ELRKH----GYAKKPIV--GR-VG 555 (652)
T ss_dssp SCTTSEEESCGGGGT-TTST-THHHHHHHHCTT---CTT-BCCEE---SSCCH---HHHHH----CEEEEECC-------
T ss_pred CCCceEEeChhHHHh-hcCH-HHHHHHHhcccC---CCC-CCchh---hcCCC---ccccC----CeEeccCC--CC-CC
Confidence 6 799999987764 5898 667778775211 221 23333 12221 11122 49999998 44 67
Q ss_pred eeeEEEeChhh-hhcc-----CCCeEEEecccCC-----CeEEEEEEECCEEE-EEEeec
Q 019076 182 HELFLAYDRFS-LSEL-----EPPMLLQEFVNHG-----GILFKIYIIGETIK-VVRRFS 229 (346)
Q Consensus 182 h~m~lv~~~~~-L~~l-----~~p~v~QEfI~h~-----G~~~KV~VvG~~v~-~~~R~S 229 (346)
.+|.++....+ ..+. +.++|+|||++-. -..+=+|++|++.. +..|-+
T Consensus 556 ~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 556 SNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp -----------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred CCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 78888754322 1221 4689999999854 23678999999976 467765
No 77
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=88.15 E-value=2.1 Score=42.07 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=53.7
Q ss_pred cccCcEEEEccCCCChhhHH-HhhCCC-CcEEEecCcC-CCCCCceeeEEEeChhhhhcc-----------C------CC
Q 019076 140 VRVPRQMVITKDSLSIPDQV-FEAGLK-LPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-----------E------PP 199 (346)
Q Consensus 140 I~~P~~~~i~~~~~~~~~~l-~~~~l~-fPvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l-----------~------~p 199 (346)
+..|++.++.. ..+..+.. ....++ ||+|+|+.+. .|-.+..+|.+..+.++.++. . .-
T Consensus 26 ~~~~~~~~~~~-~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~ 104 (425)
T 3mwd_A 26 QNRFKYARVTP-DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKN 104 (425)
T ss_dssp CSTTCCEEECT-TCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCC
T ss_pred cCCcceEEeCC-CCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEE
Confidence 45566777753 33333322 234577 9999999764 344567899999998776542 0 13
Q ss_pred eEEEecccCC-CeEEEEEEECCE
Q 019076 200 MLLQEFVNHG-GILFKIYIIGET 221 (346)
Q Consensus 200 ~v~QEfI~h~-G~~~KV~VvG~~ 221 (346)
+++|++++|+ ++.|-+-+.=|+
T Consensus 105 vlVe~~~~~~~~~E~ylgi~~Dr 127 (425)
T 3mwd_A 105 FLIEPFVPHSQAEEFYVCIYATR 127 (425)
T ss_dssp EEEEECCCCCGGGEEEEEEEEET
T ss_pred EEEEecccCCCCceEEEEEEecC
Confidence 8999999986 788877666554
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=67.49 E-value=10 Score=40.30 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=57.7
Q ss_pred HHHHHhccccCCCCccccCcEEEEccCCCChhhHHH-hhCCC-CcEEEecCcCC-CCCCceeeEEEeChhhhhcc-----
Q 019076 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVF-EAGLK-LPLVAKPLVVD-GSAKSHELFLAYDRFSLSEL----- 196 (346)
Q Consensus 125 ~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~-~~~l~-fPvVvKP~~a~-GS~~sh~m~lv~~~~~L~~l----- 196 (346)
-++|.+...+.+ ..+-.|++.++.. ..+..+... ...|+ +|+|+|+.+.. |-.+..+|.+..+.++.++.
T Consensus 12 K~ll~~~~~~~~-~~~~~~~~~~v~~-~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~iL 89 (829)
T 3pff_A 12 KELLYKFICTTS-AIQNRFKYARVTP-DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRL 89 (829)
T ss_dssp HHHHHHHCCCSS-CBCSTTCCEEECT-TCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTT
T ss_pred HHHHHHhCcccc-ccccCCceEEeCC-CCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHHH
Confidence 345555433211 1233566777743 333333222 23455 89999996653 44566789999998776542
Q ss_pred ----C--------CCeEEEecccCC-CeEEEEEEECCE
Q 019076 197 ----E--------PPMLLQEFVNHG-GILFKIYIIGET 221 (346)
Q Consensus 197 ----~--------~p~v~QEfI~h~-G~~~KV~VvG~~ 221 (346)
. .-+++|++++|+ ++.|-+-+.-|+
T Consensus 90 g~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr 127 (829)
T 3pff_A 90 GQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR 127 (829)
T ss_dssp TCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEET
T ss_pred HHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecC
Confidence 1 238999999986 788877776555
No 79
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=33.26 E-value=1.1e+02 Score=29.72 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=41.7
Q ss_pred c-EEEecCcCCCCCCceeeEEEeChhhhhccC----------------CCeEEEecccCCCe------EEEEEEECCEEE
Q 019076 167 P-LVAKPLVVDGSAKSHELFLAYDRFSLSELE----------------PPMLLQEFVNHGGI------LFKIYIIGETIK 223 (346)
Q Consensus 167 P-vVvKP~~a~GS~~sh~m~lv~~~~~L~~l~----------------~p~v~QEfI~h~G~------~~KV~VvG~~v~ 223 (346)
| +|+|... |+ .+-|+..|.+.+++..++ ..+++||=|.+--+ .==||+||.+|+
T Consensus 278 PfV~VKADa--GT-YGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vv 354 (432)
T 3k1t_A 278 PFVIVKADA--GT-YGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVV 354 (432)
T ss_dssp CCEEEEEEC--GG-GCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEE
T ss_pred ceEEEEcCC--CC-CCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECCEEE
Confidence 5 5899544 66 777788889999987762 24899998876522 335899999987
Q ss_pred E-EEe
Q 019076 224 V-VRR 227 (346)
Q Consensus 224 ~-~~R 227 (346)
+ ..|
T Consensus 355 GgFyR 359 (432)
T 3k1t_A 355 GGFYR 359 (432)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 6 344
No 80
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=31.62 E-value=12 Score=28.42 Aligned_cols=19 Identities=32% Similarity=0.898 Sum_probs=16.3
Q ss_pred EecccCC--CeEEEEEEECCE
Q 019076 203 QEFVNHG--GILFKIYIIGET 221 (346)
Q Consensus 203 QEfI~h~--G~~~KV~VvG~~ 221 (346)
+.|+||+ |-+|+|..+|+.
T Consensus 4 E~YLNHPtFGlLy~Vc~~~e~ 24 (89)
T 2xko_C 4 ENYLNHPTFGLLYQICSFGDS 24 (89)
T ss_dssp CCEEEETTTEEEEEEEECC-C
T ss_pred cccccCCccchhheeeeCCCc
Confidence 5699999 999999999887
No 81
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=31.13 E-value=65 Score=30.22 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=46.8
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCC------------CCccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q------------~~fDvilhK~t~~~~~ 93 (346)
+..+|+-.+.+.- +-+ -+|+..+. +.|-.++.++.+..-... .=+|+|..|.......
T Consensus 57 ~gk~la~lF~epSTRTR---~SFE~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~ 127 (325)
T 1vlv_A 57 KGMTLAMIFEKRSTRTR---LAFETAFA------EEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETV 127 (325)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHH------HTTCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHHH
T ss_pred CCCEEEEEeccCCcchH---HHHHHHHH------HcCCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCChHHH
Confidence 5677777665433 322 35666666 999999999875421111 1279999999875544
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
..+.+| .+++|||-.
T Consensus 128 ~~lA~~----~~vPVINa~ 142 (325)
T 1vlv_A 128 EKLAEY----SGVPVYNGL 142 (325)
T ss_dssp HHHHHH----HCSCEEESC
T ss_pred HHHHHh----CCCCEEeCC
Confidence 444444 468999954
No 82
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=30.60 E-value=49 Score=31.22 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=46.1
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCC------------ccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~------------fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+.- +-+ -+|+..+. +.|-.++.++++..-...|+ +|+|..|......
T Consensus 44 ~gk~la~lF~e~STRTR---~SFE~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~- 113 (335)
T 1dxh_A 44 KRKNIALIFEKTSTRTR---CAFEVAAY------DQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEI- 113 (335)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHH------HTTCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSCHHH-
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHH------HcCCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCChhH-
Confidence 4667777665432 322 35566666 99999999998642112221 7999999887443
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
++.+ +++.+++|||-.
T Consensus 114 --~~~l-A~~s~vPVINa~ 129 (335)
T 1dxh_A 114 --VEEL-AKFAGVPVFNGL 129 (335)
T ss_dssp --HHHH-HHHSSSCEEEEE
T ss_pred --HHHH-HHhCCCCEEcCC
Confidence 3333 344579999943
No 83
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=30.47 E-value=49 Score=31.17 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=46.7
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCC------------CCccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q------------~~fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+.- +-+ -+|+..+. +.|-.++.++.+..-... .=+|+|..|.......
T Consensus 43 ~gk~la~lF~e~STRTR---~SFE~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~ 113 (333)
T 1duv_G 43 TGKNIALIFEKDSTRTR---CSFEVAAY------DQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIV 113 (333)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHH------HTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHHH
T ss_pred CCCEEEEEecCCCccHH---HHHHHHHH------HcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCCchHH
Confidence 4667777665432 322 35666666 999999999886411111 2279999999875444
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
..+.+| .+++|||-.
T Consensus 114 ~~lA~~----~~vPVINa~ 128 (333)
T 1duv_G 114 ETLAEY----ASVPVWNGL 128 (333)
T ss_dssp HHHHHH----HSSCEEESC
T ss_pred HHHHHh----CCCCeEcCC
Confidence 444444 468999943
No 84
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=30.45 E-value=79 Score=29.69 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=41.1
Q ss_pred CCCCCcEEEEEEecccc-cccccchHHHHHHhhhcccccCC--cEEEEecCCCCCCC---------CCCccEEEEcccch
Q 019076 23 VLQPERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKG--ISFVAIDQNRPLSD---------QGPFDVVLHKLSGM 90 (346)
Q Consensus 23 ~~~~~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~G--i~~v~id~~~~l~~---------q~~fDvilhK~t~~ 90 (346)
+...+.++||+...-.. .++|++.-...+-+ .+++.| +++..++....-.+ +..+|+||- ++.
T Consensus 21 ~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~---~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~--~g~ 95 (356)
T 3s99_A 21 SMAEEKLKVGFIYIGPPGDFGWTYQHDQARKE---LVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFT--TSF 95 (356)
T ss_dssp -----CEEEEEECSSCGGGSSHHHHHHHHHHH---HHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE--CSG
T ss_pred cccCCCCEEEEEEccCCCchhHHHHHHHHHHH---HHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE--CCH
Confidence 34456899999995333 45776543332222 223778 88877765432111 134776664 232
Q ss_pred hhHHHHHHHHHhCCCee
Q 019076 91 EWCKIIEDYRQKHPEVT 107 (346)
Q Consensus 91 ~~~~~l~~y~~~~p~v~ 107 (346)
.....+.+.++++|+++
T Consensus 96 ~~~~~~~~vA~~~Pdv~ 112 (356)
T 3s99_A 96 GYMDPTVKVAKKFPDVK 112 (356)
T ss_dssp GGHHHHHHHHTTCTTSE
T ss_pred HHHHHHHHHHHHCCCCE
Confidence 33445666666777644
No 85
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=30.25 E-value=54 Score=31.26 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=46.3
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCC------------ccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~------------fDvilhK~t~~~~~ 93 (346)
...+|+..|.+.- +-+ -+|+..+. ++|-.++.++.+..-...|+ +|+|..|......
T Consensus 66 ~Gk~la~lF~e~STRTR---~SFE~A~~------~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~- 135 (359)
T 2w37_A 66 EGKNIALLFEKSSTRTR---SAFTTASI------DLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSD- 135 (359)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHH------HTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHCSEEEEESSCHHH-
T ss_pred CCCEEEEEecCCCccHH---HHHHHHHH------HcCCeEEEeCCccccCCCCcCHHHHHHHHHHhcCEEEEecCChHH-
Confidence 4667777665433 322 35666666 99999999988642222222 7999999887443
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
++.+ +++.+++|||-.
T Consensus 136 --~~~l-A~~s~vPVINa~ 151 (359)
T 2w37_A 136 --AEIL-ARDSGVPVWNGL 151 (359)
T ss_dssp --HHHH-HHHSSSCEEEEE
T ss_pred --HHHH-HHhCCCCEEcCC
Confidence 3333 344579999943
No 86
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=29.11 E-value=62 Score=30.09 Aligned_cols=74 Identities=9% Similarity=0.208 Sum_probs=46.5
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCC------------ccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~------------fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+.- +-+ -+|+..+. +.|-.++.++++..-...|+ +|+|..|......
T Consensus 35 ~gk~la~lF~e~STRTR---~SFe~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~- 104 (307)
T 3tpf_A 35 QDKTLAMIFEKNSTRTR---MAFELAIT------ELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHET- 104 (307)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHH------HTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSCHHH-
T ss_pred CCCEEEEEecCCCcchH---HhHHHHHH------HcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChHH-
Confidence 4566776665433 322 35666666 99999999988642112222 7999999987433
Q ss_pred HHHHHHHHhCCCeeeeChHH
Q 019076 94 KIIEDYRQKHPEVTILDPPD 113 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~~ 113 (346)
+++++ ++-+++|||-.+
T Consensus 105 --~~~lA-~~~~vPVINag~ 121 (307)
T 3tpf_A 105 --LLEFA-RYSKAPVINALS 121 (307)
T ss_dssp --HHHHH-HHCSSCEEEEEC
T ss_pred --HHHHH-HhCCCCEEeCCC
Confidence 33333 456799998543
No 87
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=27.06 E-value=17 Score=28.71 Aligned_cols=24 Identities=29% Similarity=0.737 Sum_probs=18.4
Q ss_pred CCeEEEecccCC--CeEEEEEEECCE
Q 019076 198 PPMLLQEFVNHG--GILFKIYIIGET 221 (346)
Q Consensus 198 ~p~v~QEfI~h~--G~~~KV~VvG~~ 221 (346)
.|+--+.|+||+ |-+|+|..+|+.
T Consensus 22 ~~ms~E~YLNHPTFGLLyrVc~~~e~ 47 (112)
T 3n5b_B 22 NPENSETYINHPTWGLLYRICMVDES 47 (112)
T ss_dssp ----CCCEEEETTTEEEEEEEEEETT
T ss_pred CCcchhhhccCCccchheeeeecCCc
Confidence 366667799999 999999999887
No 88
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=25.53 E-value=63 Score=29.98 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=46.0
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCC------------CCccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q------------~~fDvilhK~t~~~~~ 93 (346)
+..+|+-.+.+.- +-+ -+|+..++ +.|-.++.++.+..-... .=+|+|..|.......
T Consensus 44 ~gk~~~~lF~e~STRTR---~SFe~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~ 114 (301)
T 2ef0_A 44 KGKVLALLFEKPSLRTR---TTLEVAMV------HLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRHETV 114 (301)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHH------HTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSSHHHH
T ss_pred CCCEEEEEeccCCcchH---HHHHHHHH------HcCCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCChHHH
Confidence 5667777665433 322 35666666 999999999875411111 1279999999874433
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
+.+ +++-+++|||-.
T Consensus 115 ~~l----a~~~~vPVINa~ 129 (301)
T 2ef0_A 115 EAL----ARHAKVPVVNAL 129 (301)
T ss_dssp HHH----HHHCSSCEEEEE
T ss_pred HHH----HHHCCCCEEeCC
Confidence 333 344679999943
No 89
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=25.01 E-value=1.1e+02 Score=28.90 Aligned_cols=73 Identities=8% Similarity=0.109 Sum_probs=46.4
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCC------------ccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~------------fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+.- +-+ -+|+..+. +.|-.++.++++..-...|+ +|+|..|......
T Consensus 62 ~gk~la~lF~e~STRTR---~SFE~A~~------~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~~~~- 131 (339)
T 4a8t_A 62 KNKSLGMIFQQSSTRTR---VSFETAME------QLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHS- 131 (339)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHH------HTTCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSSHHH-
T ss_pred CCceEEEEecCCCchHH---HHHHHHHH------HcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHH-
Confidence 5667777664433 322 36677777 99999999988542212222 8999999887433
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
+++++ ++.+++|||-.
T Consensus 132 --~~~lA-~~~~vPVINag 147 (339)
T 4a8t_A 132 --IVDLA-NCATIPVINGM 147 (339)
T ss_dssp --HHHHH-HHCSSCEEECC
T ss_pred --HHHHH-HhCCCCEEECC
Confidence 33333 45679999954
No 90
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=24.16 E-value=60 Score=30.23 Aligned_cols=73 Identities=11% Similarity=0.189 Sum_probs=46.6
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCC------------ccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~------------fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+.- +-+ -+|+..+. +.|-.++.++++..-...|+ +|+|..|.....
T Consensus 44 ~gk~la~lF~e~STRTR---~SFE~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~-- 112 (309)
T 4f2g_A 44 HDRTLAMIFEKSSTRTR---LSFEAGIF------QLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQD-- 112 (309)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHH------HTTCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSCHH--
T ss_pred CCceEEEEecCCChhhH---hhHHHHHH------HcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCHH--
Confidence 4567777665433 322 35666666 99999999987531111111 799999988733
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
.++++ +++.+++|||-.
T Consensus 113 -~~~~l-A~~~~vPVINag 129 (309)
T 4f2g_A 113 -IIQRF-AENSRVPVINGL 129 (309)
T ss_dssp -HHHHH-HHTCSSCEEEEE
T ss_pred -HHHHH-HHhCCCCEEECC
Confidence 33444 456789999954
No 91
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=23.70 E-value=1.1e+02 Score=28.57 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=47.0
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCC------------ccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~------------fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+.- +-+ -+|+..+. +.|-.++.++.+..-...|+ +|+|+.|......
T Consensus 45 ~gk~l~~lF~e~STRTR---~SFe~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~- 114 (321)
T 1oth_A 45 QGKSLGMIFEKRSTRTR---LSTETGFA------LLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSD- 114 (321)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHH------HTTCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHH-
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHH------HcCCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCChhH-
Confidence 5667777665433 322 35677777 99999999988652112222 7999999987443
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
++.+ +++.+++|||-.
T Consensus 115 --~~~l-A~~~~vPVINa~ 130 (321)
T 1oth_A 115 --LDTL-AKEASIPIINGL 130 (321)
T ss_dssp --HHHH-HHHCSSCEEESC
T ss_pred --HHHH-HHhCCCCEEcCC
Confidence 3333 345679999943
No 92
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=23.37 E-value=75 Score=30.04 Aligned_cols=73 Identities=10% Similarity=0.147 Sum_probs=44.6
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCC------------ccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~------------fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+.- +-+ -+|+..+. +.|-.++.++++..-...|+ +|+|..|......
T Consensus 69 ~gK~la~lF~epSTRTR---~SFE~A~~------~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~~~- 138 (340)
T 4ep1_A 69 QGKILGLIFDKHSTRTR---VSFEAGMV------QLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHAD- 138 (340)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHH------HTTCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCHHH-
T ss_pred CCceEEEEecCCCccHH---HHHHHHHH------HcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhH-
Confidence 4567776665433 322 35666666 99999999988531111111 7999999887433
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
++.++ ++-+++|||-.
T Consensus 139 --~~~lA-~~~~vPVINag 154 (340)
T 4ep1_A 139 --VEELA-KESSIPVINGL 154 (340)
T ss_dssp --HHHHH-HHCSSCEEEEE
T ss_pred --HHHHH-HhCCCCEEeCC
Confidence 33333 45679999844
No 93
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=23.34 E-value=73 Score=29.88 Aligned_cols=74 Identities=5% Similarity=0.064 Sum_probs=42.9
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCC-CCC-----------CCCccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRP-LSD-----------QGPFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~-l~~-----------q~~fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+.- +-+ -+|+..+. +.|-.++.++.+.. +.. ..=+|+|+.|.......
T Consensus 47 ~gk~la~lF~e~STRTR---~SFE~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~ 117 (323)
T 3gd5_A 47 HGKVLGLVFLKASTRTR---VSFTVAMY------QLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTEL 117 (323)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHH------HTTCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSHHHH
T ss_pred CCCEEEEEecCCCcchH---hhHHHHHH------HcCCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHH
Confidence 4567777665433 322 35666666 99999999987531 111 11289999999874443
Q ss_pred HHHHHHHHhCCCeeeeChHH
Q 019076 94 KIIEDYRQKHPEVTILDPPD 113 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~~ 113 (346)
..+.+ +.+++|||-.+
T Consensus 118 ~~lA~----~~~vPVINag~ 133 (323)
T 3gd5_A 118 EEYAH----YAGIPVINALT 133 (323)
T ss_dssp HHHHH----HHCSCEEEEEC
T ss_pred HHHHH----hCCCCEEeCCC
Confidence 33333 35689998543
No 94
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=22.91 E-value=1.1e+02 Score=29.08 Aligned_cols=73 Identities=10% Similarity=0.144 Sum_probs=46.7
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCC-CCC-----------CCCccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRP-LSD-----------QGPFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~-l~~-----------q~~fDvilhK~t~~~~~ 93 (346)
...+|+-.|.+.- +-+ -+|+..+. +.|-.++.++++.. +.. ..=+|+|+.|......
T Consensus 40 ~gK~la~lF~epSTRTR---~SFE~A~~------~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~~~~- 109 (355)
T 4a8p_A 40 KNKSLGMIFQQSSTRTR---VSFETAME------QLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHS- 109 (355)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHH------HTTCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSSHHH-
T ss_pred CCCEEEEEecCCChhhH---hhHHHHHH------HcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHH-
Confidence 5667776665433 322 36677777 99999999987542 211 1128999999987433
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
++.+. ++-+++|||-.
T Consensus 110 --~~~lA-~~~~vPVINag 125 (355)
T 4a8p_A 110 --IVDLA-NCATIPVINGM 125 (355)
T ss_dssp --HHHHH-HHCSSCEEECC
T ss_pred --HHHHH-HhCCCCEEeCC
Confidence 33333 45679999954
No 95
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=21.27 E-value=1.1e+02 Score=28.39 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=46.4
Q ss_pred CcEEEEEEecccc-cccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCC------------CCccEEEEcccchhhH
Q 019076 27 ERLVVGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~kK-~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q------------~~fDvilhK~t~~~~~ 93 (346)
+..+|+-.+.+.- +-+ -+|+..+. +.|-.++.++.+..-... .=+|+|..|......
T Consensus 45 ~gk~la~lF~e~STRTR---~SFe~A~~------~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~- 114 (315)
T 1pvv_A 45 EGKTLAMIFQKPSTRTR---VSFEVAMA------HLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKD- 114 (315)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHH------HTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHH-
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHH------HcCCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCchHH-
Confidence 5677877665433 322 35677777 999999999875311111 227999999987443
Q ss_pred HHHHHHHHhCCCeeeeChH
Q 019076 94 KIIEDYRQKHPEVTILDPP 112 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VIDp~ 112 (346)
++.+ +++-+++|||-.
T Consensus 115 --~~~l-A~~~~vPVINa~ 130 (315)
T 1pvv_A 115 --VEDL-AKYATVPVINGL 130 (315)
T ss_dssp --HHHH-HHHCSSCEEEEE
T ss_pred --HHHH-HHhCCCCEEcCC
Confidence 3333 345679999954
No 96
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=20.83 E-value=1.3e+02 Score=28.48 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=46.1
Q ss_pred CcEEEEEEecc-cccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCC------------ccEEEEcccchhhH
Q 019076 27 ERLVVGYALTS-KKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWC 93 (346)
Q Consensus 27 ~~~~vGy~l~~-kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~------------fDvilhK~t~~~~~ 93 (346)
...+|+-.+.+ +-+-+ -+|+..+. ++|-.++.++.+..-...|+ +|+|+.|......
T Consensus 69 ~GK~la~lF~epSTRTR---~SFE~A~~------~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~- 138 (358)
T 4h31_A 69 LGKNIALIFEKASTRTR---CAFEVAAF------DQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFGQAI- 138 (358)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHH------HTTCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHH-
T ss_pred CCCEEEEEeCCCChhhH---HHHHHHHH------HcCCeEEECCcccccccCccchhHHHHHhhccCceeEecccchhH-
Confidence 45677776654 33332 36677777 99999999988642222222 8999999877433
Q ss_pred HHHHHHHHhCCCeeeeC
Q 019076 94 KIIEDYRQKHPEVTILD 110 (346)
Q Consensus 94 ~~l~~y~~~~p~v~VID 110 (346)
++++ +++.+++|||
T Consensus 139 --~~~l-a~~s~vPVIN 152 (358)
T 4h31_A 139 --VEEL-GAFAGVPVWN 152 (358)
T ss_dssp --HHHH-HHHSSSCEEE
T ss_pred --HHHh-hhhccCceEC
Confidence 3333 3456789998
No 97
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=20.75 E-value=1.1e+02 Score=28.47 Aligned_cols=90 Identities=10% Similarity=0.232 Sum_probs=52.2
Q ss_pred CCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecC-CCCCCCCCC------------ccEEEEcccchhh
Q 019076 26 PERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQ-NRPLSDQGP------------FDVVLHKLSGMEW 92 (346)
Q Consensus 26 ~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~-~~~l~~q~~------------fDvilhK~t~~~~ 92 (346)
-...+|+-.+.+.-.+- .-+|+..+. +.|-..+.++. +..-...|+ +|+|..|......
T Consensus 38 L~gk~la~lF~e~STRT--R~SFe~A~~------~LGg~~i~l~~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~ 109 (306)
T 4ekn_B 38 LEGKILATVFYEPSTRT--RLSFETAMK------RLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGA 109 (306)
T ss_dssp TTTCEEEEEESSCCHHH--HHHHHHHHH------HTTCEEEEECCCTTTTSSSSCCHHHHHHHHHHHCSEEEEECSSTTH
T ss_pred cCCceEEEEEcCCChhH--HhhHHHHHH------HcCCEEEEcCCcccccCCCCCCHHHHHHHHHHhCcEEEEEcCChHH
Confidence 35667777665433221 135666666 99999999986 331111222 6999999887443
Q ss_pred HHHHHHHHHhCCCeeeeChHH-----HHHHhcCHHHHHHH
Q 019076 93 CKIIEDYRQKHPEVTILDPPD-----AIKHLHNRQSMLQD 127 (346)
Q Consensus 93 ~~~l~~y~~~~p~v~VIDp~~-----ai~~l~dR~~~~~~ 127 (346)
...+ +++.+++|||-.+ -.+.|.|=+.+.+.
T Consensus 110 ~~~l----A~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~ 145 (306)
T 4ekn_B 110 ARLA----SEYSQVPIINAGDGSNQHPTQTLLDLYTIMRE 145 (306)
T ss_dssp HHHH----HHHCSSCEEESCSSSSCCHHHHHHHHHHHHHH
T ss_pred HHHH----HHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHH
Confidence 3333 3456799998643 23444454444333
No 98
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=20.00 E-value=70 Score=31.69 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.3
Q ss_pred CCcEeEEEEEEecCcCCeEEEEeccC
Q 019076 287 GLRLFNIDMIREHGMRDVFYVIDINY 312 (346)
Q Consensus 287 Gl~lfGvDvi~~~~~g~~~~ViDVN~ 312 (346)
=+.++|+|++++. +| +++|+|-|.
T Consensus 141 ~~~i~~~Dl~r~~-dG-~~~vlEdn~ 164 (474)
T 3n6x_A 141 YAHIAGVDLVRTG-EN-DFYVLEDNL 164 (474)
T ss_dssp SCSEEEEEEEECS-SS-CEEEEEEEC
T ss_pred EEEEEEEEEEECC-CC-CEEEEEeCC
Confidence 4789999999975 45 799999996
Done!