RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019076
(346 letters)
>gnl|CDD|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase.
Length = 328
Score = 574 bits (1482), Expect = 0.0
Identities = 219/321 (68%), Positives = 253/321 (78%), Gaps = 9/321 (2%)
Query: 21 SGVLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPF 80
S Q +R VVGYALT KK KSFLQP LE LAR +KGI VAID +RPLS+QGPF
Sbjct: 14 SSSSQQKRFVVGYALTPKKVKSFLQPSLEALAR------SKGIDLVAIDPSRPLSEQGPF 67
Query: 81 DVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKV 140
DV+LHKL G EW + +E+YR+KHP+VT+LDPPDAI+ LHNRQSMLQ VADL LSD G V
Sbjct: 68 DVILHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSV 127
Query: 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPM 200
VP+Q+V+ D SIPD V AGLK PLVAKPLV DGSAKSH++ LAYD+ LS+LEPP+
Sbjct: 128 GVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPL 187
Query: 201 LLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDA 260
+LQEFVNHGG+LFK+Y++G+ +K VRRFSLP+VS+ EL+ V FPRVS+AAASADDA
Sbjct: 188 VLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDA 247
Query: 261 D---LDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYG 317
D LDP +AELPPRP LE LARELR RLGLRLFN DMIREHG D +YVIDINYFPGY
Sbjct: 248 DNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYA 307
Query: 318 KMPDYEHIFTDFLLSLEQSKC 338
KMP YE + TDFLLSL Q K
Sbjct: 308 KMPGYETVLTDFLLSLVQKKY 328
>gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate
5/6-kinase. This family consists of several inositol 1,
3, 4-trisphosphate 5/6-kinase proteins. Inositol
1,3,4-trisphosphate is at a branch point in inositol
phosphate metabolism. It is dephosphorylated by specific
phosphatases to either inositol 3,4-bisphosphate or
inositol 1,3-bisphosphate. Alternatively, it is
phosphorylated to inositol 1,3,4,6-tetrakisphosphate or
inositol 1,3,4,5-tetrakisphosphate by inositol
trisphosphate 5/6-kinase.
Length = 307
Score = 451 bits (1163), Expect = e-161
Identities = 176/308 (57%), Positives = 226/308 (73%), Gaps = 8/308 (2%)
Query: 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHK 86
+R +VGYAL KK KSF+QP L LAR +GI V +D +RPLS+QGPFD+++HK
Sbjct: 6 KRYLVGYALAEKKIKSFIQPSLAELAR------KRGIDLVQLDPSRPLSEQGPFDIIIHK 59
Query: 87 LSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM 146
L+ EW +E++R+ HPEV +LDPP AI+ LHNRQSMLQ VADLNLS +G+ VP Q+
Sbjct: 60 LTDKEWRHRLEEFREAHPEVPVLDPPPAIRRLHNRQSMLQVVADLNLSMEDGRFGVPPQV 119
Query: 147 VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFV 206
V+ KD+ S+ +AGL PL+AKPLV DG+AKSHE+ L YD+ L++L+PP++LQEFV
Sbjct: 120 VVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSHEMSLVYDQEGLNKLQPPLVLQEFV 179
Query: 207 NHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD--P 264
NHGG+LFK+Y++GE + VV+R SLP+VS L + FRF +VS+ ASADDA+LD
Sbjct: 180 NHGGVLFKVYVVGEHVTVVKRRSLPDVSAGTLDRSSGSFRFSQVSNLTASADDAELDKIL 239
Query: 265 GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEH 324
IAE+PP P LE LAR LR LGLRLFN D+IR+ G D + VIDINYFPGY KMP+YE
Sbjct: 240 EIAEMPPDPFLEDLARALRRALGLRLFNFDIIRDAGTADRYLVIDINYFPGYAKMPEYET 299
Query: 325 IFTDFLLS 332
+ TDF S
Sbjct: 300 VLTDFFWS 307
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 183
Score = 38.8 bits (91), Expect = 0.001
Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 31/185 (16%)
Query: 140 VRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH------ELFLAYDRF-S 192
+ VP ++ + + P+V KP GS EL A +
Sbjct: 17 LPVPPFFLVDDEE---DLDAAAEEIGFPVVLKPRDGAGSLGVFRVDSAAELEAALAALAA 73
Query: 193 LSELEPPMLLQEFVNHGGILFKI--YIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRV 250
E L++E++ G + + + + + VS+ V
Sbjct: 74 EVEDTREYLVEEYI--DGDEYHVDGLVDDGELVFL------GVSRYLGPPPPDFSE--GV 123
Query: 251 SSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDI 310
+ S + L + R L ER+ + L R G +F+++ +++I
Sbjct: 124 ELGSVSPGEDPLPEAL-----RELAERVLKALGLRNG--VFHLEFFLTP--DGRPVLLEI 174
Query: 311 NYFPG 315
N PG
Sbjct: 175 NPRPG 179
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 35.4 bits (82), Expect = 0.032
Identities = 59/309 (19%), Positives = 103/309 (33%), Gaps = 64/309 (20%)
Query: 38 KKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLS------------DQGPFDVVLH 85
K +F + + L + G + + + L+ + + L
Sbjct: 15 YKDTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLS 74
Query: 86 KLSGMEWCKIIEDY---------RQKHPE-VTILDPPDAIKHLHNRQSMLQDVADLNLSD 135
L ++ + +D R + V +++ P +I+ N + L
Sbjct: 75 LLDELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQSIRRCRN------KLYTTQLLA 128
Query: 136 CNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA--YDRFSL 193
G + VP +IT+D + V E L P+V KPL DGS +FL D L
Sbjct: 129 KAG-IPVPPT-LITRDPDEAAEFVAEH-LGFPVVLKPL--DGSG-GRGVFLVEDADPELL 182
Query: 194 SELE-------PPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFR 246
S LE +++QE++ + ++G V + + ++
Sbjct: 183 SLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPASGDFRSNLARG- 241
Query: 247 FPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFY 306
A EL E LA + LGL L +D+I E Y
Sbjct: 242 ------GRAEP---------CELTEE--EEELAVKAAPALGLGLVGVDII-EDKDGL--Y 281
Query: 307 VIDINYFPG 315
V ++N P
Sbjct: 282 VTEVNVSPT 290
>gnl|CDD|179554 PRK03204, PRK03204, haloalkane dehalogenase; Provisional.
Length = 286
Score = 31.8 bits (72), Expect = 0.51
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 265 GIAELP-----PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFY 306
G+AE+P RPLL RLARE+ LG + + GM+DV +
Sbjct: 199 GVAEMPKQILAARPLLARLAREVPATLGTK----PTLLVWGMKDVAF 241
>gnl|CDD|220974 pfam11085, YqhR, Conserved membrane protein YqhR. This family is
conserved in the Bacillaceae family of the Firmicutes.
The function is not known.
Length = 174
Score = 30.4 bits (69), Expect = 0.90
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 185 FLAYDRFSLSELEPPMLLQEFVNHG------GILFKIYIIG 219
+LAY F+ +E+ P M+L F G + I +IG
Sbjct: 40 YLAY-IFNFTEISPNMILLPFALGEWKKGWLGNVISIVLIG 79
>gnl|CDD|176121 cd08430, PBP2_IlvY, The C-terminal substrate binding of LysR-type
transcriptional regulator IlvY, which activates the
expression of ilvC gene that encoding acetohydroxy acid
isomeroreductase for the biosynthesis of branched amino
acids; contains the type 2 periplasmic binding fold. In
Escherichia coli, IlvY is required for the regulation of
ilvC gene expression that encodes acetohydroxy acid
isomeroreductase (AHIR), a key enzyme in the
biosynthesis of branched-chain amino acids (isoleucine,
valine, and leucine). The ilvGMEDA operon genes encode
remaining enzyme activities required for the
biosynthesis of these amino acids. Activation of ilvC
transcription by IlvY requires the additional binding of
a co-inducer molecule (either alpha-acetolactate or
alpha-acetohydoxybutyrate, the substrates for AHIR) to a
preformed complex of IlvY protein-DNA. Like many other
LysR-family members, IlvY negatively auto-regulates the
transcription of its own divergently transcribed ilvY
gene in an inducer-independent manner. This
substrate-binding domain has significant homology to the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 199
Score = 30.2 bits (69), Expect = 1.1
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 95 IIEDYRQKHPEVTIL----DPPDAIKHLHNRQSMLQDVA 129
I+E +R +HP+V I DP DAI + N ++ D+A
Sbjct: 18 ILERFRAQHPQVEIKLHTGDPADAIDKVLNGEA---DIA 53
>gnl|CDD|188316 TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic
binding protein. Partial phylogenetic profiling
(PMID:16930487) vs. the genome property of glycine
betaine biosynthesis from choline consistently reveals a
member of this ABC transporter periplasmic binding
protein as the best match, save for the betaine
biosynthesis enzymes themselves. Genomes often carry
several paralogs, one encoded together with the permease
and ATP-binding components and another encoded next to a
choline-sulfatase gene, suggesting that different
members of this protein family interact with shared
components and give some flexibility in substrate. Of
two members from Sinorhizobium meliloti 1021, one
designated ChoX has been shown experimentally to bind
choline (though not various related compounds such as
betaine) and to be required for about 60 % of choline
uptake. Members of this protein have an invariant Cys
residue near the N-terminus and likely are lipoproteins
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 290
Score = 30.0 bits (68), Expect = 1.7
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 14/73 (19%)
Query: 104 PEVTILDPPDAIKHLHNRQ----------SMLQDVADLNLSDCNGKV-RVPRQMVITKDS 152
P+VT L P L N +M D+ + G V + + K +
Sbjct: 38 PKVTTLSVPITYAGLKNGDLDVFLGNWMPAMEPDIKPYLEA---GSVEVLGPNLEGAKYT 94
Query: 153 LSIPDQVFEAGLK 165
L++P V +AG+K
Sbjct: 95 LAVPTYVADAGVK 107
>gnl|CDD|233971 TIGR02678, TIGR02678, TIGR02678 family protein. Members of this
protein belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria) [Hypothetical
proteins, Conserved].
Length = 375
Score = 29.8 bits (67), Expect = 2.1
Identities = 22/47 (46%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 247 FPRVSSAAASADDAD--LDPGIAELPPRPLLERLARELRHRLGLRLF 291
PR SA A D D L P AE P R R LRHRL RLF
Sbjct: 172 APRGPSAVAVPADHDERLAPLTAEEAPGTD-ARRWRALRHRLVRRLF 217
>gnl|CDD|198386 cd10439, GIY-YIG_COG3410, GIY-YIG domain of uncharacterized
bacterial protein structurally related to COG3410. This
family contains a group of uncharacterized bacterial
proteins. Although their function roles have not been
recognized, these proteins contain a putative GIY-YIG
domain in their N-terminus. Moreover, a conserved
domain COG3410 with unknown function has been found in
the C-terminus of most family members.
Length = 80
Score = 27.6 bits (62), Expect = 2.1
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 208 HGGILFKIYIIGETIKVVRRFS--LPNVSKRELAKVVSVF 245
+ K+YI GET ++RR L + K+ L + V
Sbjct: 9 YDKKKKKVYI-GETNNILRRLKQHLKDPEKKFLRDLNQVI 47
>gnl|CDD|225960 COG3426, COG3426, Butyrate kinase [Energy production and
conversion].
Length = 358
Score = 29.7 bits (67), Expect = 2.4
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 12 DEEDEEEKQSGVLQPERLVVGYALTSK---KKKSFLQPKLEILARYILTHTNKGISFVA- 67
DE ++ + SG+ + ER + +AL K ++ + K ++ H GIS A
Sbjct: 134 DEMEDVARFSGIPEIERKSIFHALNQKAVARRAAKEVGKRYEEMNIVVAHMGGGISVGAH 193
Query: 68 -----IDQNRPLSDQGPF 80
ID N L +GPF
Sbjct: 194 KQGRVIDVNNALDGEGPF 211
>gnl|CDD|153246 cd07984, LPLAT_LABLAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LABLAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as lipid A
biosynthesis lauroyl/myristoyl (LABLAT, HtrB)
acyltransferases and similar proteins.
Length = 192
Score = 29.1 bits (66), Expect = 2.7
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 21/68 (30%)
Query: 273 PLLERLARELRHRLGLRLFNIDMIREHGMRD----------VFYVIDINYFPGYGKMPDY 322
PLL+RL R R G RL R G+R+ V + D +
Sbjct: 56 PLLDRLITRGRERFGARLIP----RGGGLRELIRALKKGEIVGILPDQDPGRK------- 104
Query: 323 EHIFTDFL 330
+F F
Sbjct: 105 GGVFVPFF 112
>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family,
redox active TRX domains; composed of eukaryotic
proteins involved in oxidative protein folding in the
endoplasmic reticulum (ER) by acting as catalysts and
folding assistants. Members of this family include PDI
and PDI-related proteins like ERp72, ERp57 (or ERp60),
ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI,
ERp57, ERp72, P5, PDIR and ERp46 are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins usually contain multiple copies of a redox
active TRX (a) domain containing a CXXC motif, and may
also contain one or more redox inactive TRX-like (b)
domains. Only one a domain is required for the oxidase
function but multiple copies are necessary for the
isomerase function. The different types of PDIs may show
different substrate specificities and tissue-specific
expression, or may be induced by stress. PDIs are in
their reduced form at steady state and are oxidized to
the active form by Ero1, which is localized in the ER
through ERp44. Some members of this family also contain
a DnaJ domain in addition to the redox active a domains;
examples are ERdj5 and Pfj2. Also included in the family
is the redox inactive N-terminal TRX-like domain of
ERp29.
Length = 101
Score = 27.6 bits (62), Expect = 3.3
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 272 RPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVID---INYFPGYGKMP-DYEH 324
P E+LA+EL+ + + +D + + + V I FP K P YE
Sbjct: 34 APEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEG 90
>gnl|CDD|221300 pfam11898, DUF3418, Domain of unknown function (DUF3418). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 582 to 594 amino acids in length. This domain is
found associated with pfam07717, pfam00271, pfam04408.
Length = 586
Score = 29.4 bits (67), Expect = 3.4
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 266 IAELPPR--PLLERLARELRHRLGLRL----FNIDMIREHGMRDVFYVID 309
+ L P PLL+ LARELR G+R+ ++++ + H +R F V+D
Sbjct: 219 LEALEPGEGPLLDALARELRRMTGVRIPPDDWDLEALPPH-LRMNFRVVD 267
>gnl|CDD|148278 pfam06576, DUF1133, Protein of unknown function (DUF1133). This
family consists of a number of hypothetical proteins
from Escherichia coli O157:H7 and Salmonella typhi. The
function of this family is unknown.
Length = 176
Score = 28.7 bits (64), Expect = 3.5
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNK-GISFVAIDQ----NRPLSD-----QGPF 80
V AL KK +P+LE R +L K ++ + +R +S+ G
Sbjct: 60 VNEALRRMKKSGIEKPELEAFFREMLNGKQKSWLAHCTDTEALKIDRVISEVLGEYPGLI 119
Query: 81 DVVL--HKLSGMEWCKIIEDYRQKHPEVTI 108
++ ++ GM K+ E+ +KHPE
Sbjct: 120 SILRQRYEGRGMSKRKMAEELNRKHPEWCF 149
>gnl|CDD|236961 PRK11716, PRK11716, DNA-binding transcriptional regulator IlvY;
Provisional.
Length = 269
Score = 28.2 bits (64), Expect = 6.3
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 94 KIIEDYRQKHPEVTIL----DPPDAIKHLHNRQ 122
I++ +R +HP V I D DA++ + + +
Sbjct: 84 PILDRFRAEHPLVEIKLTTGDAADAVEKVQSGE 116
>gnl|CDD|236160 PRK08136, PRK08136, glycosyl transferase family protein;
Provisional.
Length = 317
Score = 28.3 bits (64), Expect = 6.9
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 249 RVSSA----------AASADDA--DLDPG-IAELPPRPLLERLAR--ELRHRLGLR 289
RV+SA AD A L G A +P L LAR LR R+G+R
Sbjct: 123 RVTSAEIFEALGIPPTLHADQAQAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVR 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.403
Gapped
Lambda K H
0.267 0.0863 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,600,485
Number of extensions: 1889370
Number of successful extensions: 1931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1926
Number of HSP's successfully gapped: 37
Length of query: 346
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 248
Effective length of database: 6,590,910
Effective search space: 1634545680
Effective search space used: 1634545680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)