RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019076
(346 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 316 bits (811), Expect = e-107
Identities = 95/335 (28%), Positives = 162/335 (48%), Gaps = 23/335 (6%)
Query: 26 PERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLH 85
+ VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++H
Sbjct: 16 LKGKRVGYWLSEKKIKKLNFQAFAELCR------KRGMEVVQLNLSRPIEEQGPLDVIIH 69
Query: 86 KLS------------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNL 133
KL+ +E ++Y HPE +LDP AI+ L +R + + +
Sbjct: 70 KLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEA 129
Query: 134 SDCNGKVRVPRQMVITK-DSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 192
+ ++ P M +T + + GL P + K V G+ SHE+ + +++
Sbjct: 130 YMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEG 188
Query: 193 LSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSS 252
L+ ++PP ++Q F+NH +L+K++++GE+ VV+R SL N S + F VS
Sbjct: 189 LNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK 248
Query: 253 AAASADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDI 310
+S+ +LD G+ E P ++ L+R LR LG+ LF ID+I + VIDI
Sbjct: 249 PESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTGQ-HAVIDI 307
Query: 311 NYFPGYGKMPDYEHIFTDFLLSLEQSKCRKRPATA 345
N FPGY + ++ + + ++ Q + AT
Sbjct: 308 NAFPGYEGVSEFFTDLLNHIATVLQGQSTAMAATG 342
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 285 bits (731), Expect = 1e-95
Identities = 62/334 (18%), Positives = 125/334 (37%), Gaps = 32/334 (9%)
Query: 21 SGVLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPF 80
+ + + + L K+K+ + + L D+ P
Sbjct: 4 GSMTTKQTVSLFIWLPESKQKTLFISTKNHTQF------ELNNIIFDVTLSTELPDKEPN 57
Query: 81 DVVLHKLSG-MEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGK 139
++ + + + Y + HP+V L+ + +R+ + +
Sbjct: 58 AIITKRTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NN 110
Query: 140 VRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPP 199
+ +P + + + L LP + KP G+ +H++ + ++ + ++ P
Sbjct: 111 IPIPNSFSVKSKE-EVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFP 169
Query: 200 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVV-------SVFRFPRV-- 250
L Q ++NH + K++ IG T+K R SLPNV + + V + +P
Sbjct: 170 CLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVI 229
Query: 251 -------SSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRD 303
+SA DP + L + LA ++R LG++L ID I+E+ +
Sbjct: 230 DKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGN 289
Query: 304 VFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSK 337
V+D+N FP YG D++ L +
Sbjct: 290 -PLVVDVNVFPSYGGKVDFDWFVEKVALCYTEVA 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 1e-11
Identities = 65/429 (15%), Positives = 136/429 (31%), Gaps = 115/429 (26%)
Query: 9 HKEDEEDEEEKQSGVLQPERL------VVGYALTSKKKKSFLQPKLEIL--ARYILTHTN 60
E + + + Q +RL Y ++ + L+ L L A+ +L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 61 KGI--SFVAID--QNRPLSDQGPFDV-------------VLHKLSGMEWCKIIEDYRQ-- 101
G ++VA+D + + + F + VL L + +I ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRS 217
Query: 102 ---KHPEVTILDPPDAIKHLHNRQS------MLQDVADLNLSDC-NGKVRVPRQMVITKD 151
+ ++ I ++ L + +L +V + + N ++ ++ T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRF 274
Query: 152 SLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGI 211
+ D + A + + + L L Y +L P +L
Sbjct: 275 K-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLT------TN 326
Query: 212 LFKIYIIGETIKV-VRRFS-LPNVSKRELAKVVSVF---------R--------FP---R 249
++ II E+I+ + + +V+ +L ++ R FP
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 250 VSSAAAS---ADDADLDPG--IAELPPRPLLER-----------LARELR---------H 284
+ + S D D + +L L+E+ + EL+ H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 285 RLGLRLFNIDMIREHGMRDVFYVIDINYF---PGY--------GKMPDYEHIFTD--FLL 331
R + +NI + D+ YF G+ +M + +F D FL
Sbjct: 447 RSIVDHYNI--PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL- 503
Query: 332 SLEQSKCRK 340
+ K R
Sbjct: 504 ---EQKIRH 509
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 40.2 bits (94), Expect = 7e-04
Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 40/207 (19%)
Query: 107 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAG-LK 165
I+ P A + ++ +M + + R T +++ ++ AG ++
Sbjct: 101 VIVSPYAACELCFDKYTMYEYCLRQG-------IAHAR----TYATMASFEEALAAGEVQ 149
Query: 166 LPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVV 225
LP+ KP S + + + L +++QE ++G+ + V
Sbjct: 150 LPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQE-----------LLVGQELGV- 197
Query: 226 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHR 285
+ ++ ++ + + + + + R + L +
Sbjct: 198 --DAYVDLISGKVTSIFIKEKLTMRAG----------ETDKSRSVLRDDVFELVEHVLDG 245
Query: 286 LGLR-LFNIDMIREHGMRDVFYVIDIN 311
GL + D+ G Y+ +IN
Sbjct: 246 SGLVGPLDFDLFDVAG---TLYLSEIN 269
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 38.2 bits (89), Expect = 0.002
Identities = 33/275 (12%), Positives = 82/275 (29%), Gaps = 62/275 (22%)
Query: 61 KGISFVAIDQNR---PLSDQGP----FDVVL-HKLSGMEWCKIIEDYRQKHPEVTILDPP 112
G+ + + L ++ V L +S + +++ P
Sbjct: 23 LGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALG--IPVVNRP 80
Query: 113 DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEA--GLKLPLVA 170
+ I+ ++ + L+ + P+ + T ++ P+V
Sbjct: 81 EVIEACGDKWATSV-----ALAKAG--LPQPKTALATD-----REEALRLMEAFGYPVVL 128
Query: 171 KPL-------VVDGSAKSHELFLAYDRFSLSELE-PPMLLQEFVNHGGILFKIYIIG-ET 221
KP+ + + L + +QE+V G +++++G
Sbjct: 129 KPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERA 188
Query: 222 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARE 281
I + R S + ++ A++ L +A L+ +
Sbjct: 189 IAAIYRRSA---------------HWITNTARGGQAENCPLTEEVAR---------LSVK 224
Query: 282 LRHRLGLRLFNIDMIR-EHGMRDVFYVIDINYFPG 315
+G + +D+ E G V ++N+
Sbjct: 225 AAEAVGGGVVAVDLFESERG----LLVNEVNHTME 255
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.011
Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 89/280 (31%)
Query: 52 ARYIL----THT--NKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPE 105
A+ + H G S + I N P++ + +H G + +I E+Y
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVN------LTIH-FGGEKGKRIRENY----SA 1690
Query: 106 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK 165
+ D + + ++N T + + L
Sbjct: 1691 MIFETIVDG------KLKTEKIFKEINEH-------------STSYTFRSEKGL----LS 1727
Query: 166 LPLVAKP-LVVDGSA-----KSHELFLAYDRF---SLSE---LEPPMLLQEFVNHGGILF 213
+P L + A KS L A F SL E L + ++
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL---------ASLADVMS 1778
Query: 214 KIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG-IAELPPR 272
I ++VV R + V+V PR ++ ++PG +A +
Sbjct: 1779 ----IESLVEVVF--------YRGMTMQVAV---PRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 273 PLLERLARELRHRLGLRL----FNIDMIREHGMRDVFYVI 308
L+ + + R G + +N++ + YV
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVE-----NQQ---YVA 1855
Score = 34.3 bits (78), Expect = 0.069
Identities = 64/349 (18%), Positives = 122/349 (34%), Gaps = 114/349 (32%)
Query: 22 GVLQPERLVVGYALTSKKKKSFLQPKLEILARY--ILTHTNKGI---SFVAIDQNRPLSD 76
GV+Q + Y +T+K P E+ + H+ +G+ +A +D
Sbjct: 242 GVIQ----LAHYVVTAKLLG--FTPG-ELRSYLKGATGHS-QGLVTAVAIA------ETD 287
Query: 77 QGP--FDVVLHKLSGMEWCKIIEDYR--QKHPEVTILDPP----DAIKHLHNRQS-MLQD 127
F V ++ + + R + +P ++ PP D++++ S ML
Sbjct: 288 SWESFFVSVRKAITVLFFI----GVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLS- 340
Query: 128 VADLNLSD-------CNG------KVRV-----PRQMVIT--KDSLSIPDQVFEAGLKLP 167
+++L N +V + + +V++ SL GL L
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL--------YGLNLT 392
Query: 168 LVAKPLVVDGSAKSHELF----LAYD-RFSL-------SE-LEP--PMLLQEFVNHGGIL 212
L K G +S F L + RF L S L P ++ ++ V + +
Sbjct: 393 L-RKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKN-NVS 449
Query: 213 FKIYIIGETIKV----------VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDA-- 260
F + I++ +R S ++S+R + + R P V + A
Sbjct: 450 FN----AKDIQIPVYDTFDGSDLRVLS-GSISER-IVDC--IIRLP-VKWETTTQFKATH 500
Query: 261 --DLDPGIAELPPRPLLERLARELRHRLGLRL-----FNIDMIREHGMR 302
D PG A L L + G+R+ +I+ ++G +
Sbjct: 501 ILDFGPGGA-----SGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 32.7 bits (74), Expect = 0.20
Identities = 37/272 (13%), Positives = 71/272 (26%), Gaps = 110/272 (40%)
Query: 3 LNGEISHKE--DEEDEE------EKQSGVL------QPERLVVGYALTSKKKKSFLQPKL 48
++G++ ++ E +E + G+L QP ++ A K L P
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 49 EILARYILTHTNKGIS---FVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPE 105
A G S + A L L+
Sbjct: 1757 ATFA---------GHSLGEYAA----------------LASLAD---------------- 1775
Query: 106 VTILDPPDAIKHLHNRQSMLQDVA--DLNLSDCNGKVRV-PRQMVITKDSLSIPDQVFEA 162
++ ++ + R +Q D G + + P ++ S + +
Sbjct: 1776 --VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA-----ASFSQEALQY 1828
Query: 163 GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNH---GGILFKIYII- 218
VV+ K + E VN+ Y+
Sbjct: 1829 -----------VVERVGKRTGWLV-----------------EIVNYNVENQ----QYVAA 1856
Query: 219 GET------IKVVRRFSLPNVSKRELAKVVSV 244
G+ V+ L + EL K +S+
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 32.2 bits (73), Expect = 0.26
Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 56/228 (24%)
Query: 111 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPD-QVFEAGLKLPLV 169
A ++ ++ M V+ + +T ++ D + + PL+
Sbjct: 130 GVQAAENARDKNKMRDAFNKAG-------VKSIKNKRVT----TLEDFRAALEEIGTPLI 178
Query: 170 AKPLVVDGSA------KSHELFLAYDRFS----------LSELEPPMLLQEFV------N 207
KP + S + ++R + E P + +EF+
Sbjct: 179 LKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDW 238
Query: 208 HGGILFKIYIIGETIKVVRRFSLPNVS-KRELAKVVSV-FRFPRVSSAAASADDADLDPG 265
+ + YI E I + + K P + LD
Sbjct: 239 YQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGFTETSHITP-----------SILDEE 287
Query: 266 IAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDIN 311
+ + A++ LGL+ + ++ +I+
Sbjct: 288 AKK-----KIVEAAKKANEGLGLQNCATHTEIKLMKN--REPGLIESA 328
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 31.4 bits (71), Expect = 0.40
Identities = 61/347 (17%), Positives = 111/347 (31%), Gaps = 95/347 (27%)
Query: 22 GVLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFV-AIDQNRPLSDQGPF 80
G ++VVG +KK KS +P EIL R L + F + N P+ +
Sbjct: 1 GSFTERQIVVGICSMAKKSKS--KPMKEILERISLFKYITVVVFEEEVILNEPVENWPLC 58
Query: 81 DVVLHKLS-GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGK 139
D ++ S G K + + ++P I D + +R+ + +
Sbjct: 59 DCLISFHSKGFPLDKAVAYAKLRNP-FVINDLNMQ-YLIQDRREVYSILQAEG------- 109
Query: 140 VRVPRQMVITKDSLSIPDQVFEAG----------LKLPLVAKPLVVDGSAKSHELFLAYD 189
+ +PR ++ +D + + G + P V KP+ SA+ H +++ Y
Sbjct: 110 ILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPV----SAEDHNVYIYYP 165
Query: 190 RFS--------------LSELEPPM--------LLQEFVNHGGILFKIYIIGETI----- 222
+ S P + +EF+ G K+Y +G
Sbjct: 166 TSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEA 225
Query: 223 -------KVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLL 275
V R + +E+ V L R
Sbjct: 226 RKSPALDGKVER----DSEGKEVRYPV-------------------------ILNAR--E 254
Query: 276 ERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322
+ +A ++ + D++R +G YV D+N F Y
Sbjct: 255 KLIAWKVCLAFKQTVCGFDLLRANG---QSYVCDVNGFSFVKNSMKY 298
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 30.2 bits (68), Expect = 1.1
Identities = 8/62 (12%), Positives = 20/62 (32%)
Query: 276 ERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQ 335
+ L +H + +++ + V+ + G G P+ F L+ +
Sbjct: 30 KTLCEIFKHAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMRH 89
Query: 336 SK 337
Sbjct: 90 PN 91
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 29.2 bits (66), Expect = 2.1
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 77 QGPFDVVL---HKLSGMEW-CKIIEDYRQKHPEVTIL 109
G VL +K + ++ K+++D + EV +
Sbjct: 28 LGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELH 64
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 28.5 bits (64), Expect = 3.1
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 77 QGPFDVVL---HKLSGMEW-CKIIEDYRQKHPEVTIL 109
G VL +K + ++ K+++D + EV +
Sbjct: 72 LGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELH 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.1
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 235 KRELAKVVSVFRF--PRVSSAAASADDADLD 263
K+ L K+ + + SA A A A ++
Sbjct: 19 KQALKKLQASLKLYAD--DSAPALAIKATME 47
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 27.6 bits (61), Expect = 4.4
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 278 LARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIF 326
L++ L L L L + D +E M D D + G ++
Sbjct: 21 LSQALATGLRLPLLSKDAFKEV-MFDGLGWSDREWSRRVGA-TAIMMLY 67
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane
protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Length = 133
Score = 27.1 bits (61), Expect = 5.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 142 VPRQMVITKDSLSI 155
+P Q V+TKDS++I
Sbjct: 23 IPPQEVLTKDSVTI 36
>3lr0_A Sensor protein; niaid, seattle structural genomics center for
infectious DIS ssgcid, PH, RISS, iodide phased,
burkholder melioidosis; 1.90A {Burkholderia
pseudomallei} PDB: 3lr3_A 3lr5_A
Length = 143
Score = 26.4 bits (58), Expect = 8.0
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 260 ADLDPGIAELPPRPLLERLARELRHRLG 287
+ P + + ++R RLG
Sbjct: 76 REKTDKFKLQPDESVNRLIEHDIRSRLG 103
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 26.8 bits (60), Expect = 8.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 142 VPRQMVITKDSLSI 155
VP Q ITKD++ +
Sbjct: 18 VPVQETITKDNVPV 31
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase,
NOS, INOS, alternative splicing, calcium,
calmodulin-binding, FAD, FMN, heme, iron, metal-binding;
HET: FMN; 2.50A {Homo sapiens}
Length = 219
Score = 27.1 bits (60), Expect = 8.0
Identities = 8/59 (13%), Positives = 17/59 (28%)
Query: 276 ERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLE 334
L ++ +D R + + ++ + G G P L L+
Sbjct: 59 WDLGALFSCAFNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFMLK 117
>3te8_A Sensor histidine kinase RISS; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
Length = 127
Score = 26.4 bits (58), Expect = 8.5
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 260 ADLDPGIAELPPRPLLERLARELRHRLG 287
+ P + + ++R RLG
Sbjct: 60 REKTDKFKLQPDESVNRLIEHDIRSRLG 87
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii}
Length = 113
Score = 26.0 bits (58), Expect = 9.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 142 VPRQMVITKDSLSI 155
VP Q VI KD++ +
Sbjct: 14 VPPQEVICKDNVVV 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.403
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,583,949
Number of extensions: 358435
Number of successful extensions: 1020
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1007
Number of HSP's successfully gapped: 33
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)