BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019077
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 181 SPSHQIGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEET 239
S SHQ+GV G V ++ R++LVV+++ MWK P G ED+ AVREV EET
Sbjct: 22 SMSHQVGVAGAVFDESTRKILVVQDR--NKLKNMWKFPGGLSEPEEDIGDTAVREVFEET 79
Query: 240 GVDTIFLEMVAFRHVHLV--AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
G+ + F +++ R H AF KSD+ +C LKP SF I ++E +WM L + K
Sbjct: 80 GIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAK 139
Query: 298 QPFYLEDDMSRKVIDICIKAYDDRFN--GFIAHELASKLDGKLSCLYHND 345
++ +V + + Y + F+ EL + G LYH +
Sbjct: 140 TEN--TTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLFYKLYHKE 187
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT- 243
++G GG V N KREVL+++++ G W P G+ E L AVREV EETGV
Sbjct: 2 ELGAGGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56
Query: 244 IFLEMVAFRHVHLVAFEKSDLLFVC 268
+ L + R+V+ E+ F+
Sbjct: 57 VLLPLYPTRYVNPKGVEREVHWFLM 81
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT- 243
++G GG V N KREVL+++++ G W P G+ E L AVREV E+TGV
Sbjct: 2 ELGAGGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESLEEAAVREVWEQTGVRAE 56
Query: 244 IFLEMVAFRHVHLVAFEKSDLLFVC 268
+ L + R+V+ E+ F+
Sbjct: 57 VLLPLYPTRYVNPKGVEREVHWFLM 81
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 186 IGVGGFVMNDKREVLVVKE-KCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
I V + N+K E L+++ + R+ +G W +P G +N E L G REV EETG+ +
Sbjct: 9 ISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMV 68
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 180 GSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEET 239
G P + + D R VL+ + +S +G+W+ P G + E + VRE+ EE
Sbjct: 4 GLPILLVTAAALIDPDGR-VLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEEL 62
Query: 240 GVDTIF--LEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
GVDT L +AF F L+ C S+ +E Q W+ E +
Sbjct: 63 GVDTRASCLAPLAFASHSYDTFHLLXPLYACR----SWRGRATAREGQTLAWVRAERLRE 118
Query: 298 QP 299
P
Sbjct: 119 YP 120
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 193 MNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
++++ EVL+++E R C G W +P G + E + REVKEE G+
Sbjct: 28 LSEQDEVLLIQE-AKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGL 75
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 179 PGSPSH----QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVRE 234
PGS H ++G G ++ D R +L+ +++ P + G W +P G ++ E + RE
Sbjct: 19 PGSMQHTEQPRVGCGAAIVRDGRILLIKRKRAPEA--GCWGLPGGKVDWLEPVERAVCRE 76
Query: 235 VKEETGV 241
++EE G+
Sbjct: 77 IEEELGI 83
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 188 VGGFVMNDKREVLVVKEKC----PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
G ++N++ ++L+V+EK P +G+W IP+G + E+ AVRE EETG+
Sbjct: 16 AGVVLLNERGDILLVQEKGIPGHPEK-AGLWHIPSGAVEDGENPQDAAVREACEETGL 72
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 214 WKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF--RHVHLVAFEKSDLLFVCMLK 271
W P G++ ED A+RE +EE G++ L ++ R ++ VA K + + +
Sbjct: 38 WTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAE 97
Query: 272 PLSFEITI-YEKEIQAAKWMPLEE 294
+++ I E QA +W+ LEE
Sbjct: 98 VKDYDVEIRLSHEHQAYRWLGLEE 121
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 19/120 (15%)
Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE 247
V + D + +L+ + +G+W+ G + E VRE++EE G++ E
Sbjct: 12 VAAIIERDGK-ILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGE 70
Query: 248 MVAF-------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
VA R +HL A+ D F T+ E QA W EE ++ P
Sbjct: 71 YVASHQREVSGRIIHLHAWHVPD-----------FHGTLQAHEHQALVWCSPEEALQYPL 119
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 10/129 (7%)
Query: 175 PCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVRE 234
P +P S I V +++ VL+ + +S +G+W+ P G + + E + +RE
Sbjct: 19 PGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRE 78
Query: 235 VKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSF----EITIYEKEIQAAKWM 290
++EE GV V ++ + F +L PL F + +E Q KW+
Sbjct: 79 LEEELGVH------VQADNLFPLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNLKWI 132
Query: 291 PLEEFVKQP 299
+ + K P
Sbjct: 133 FINDLDKYP 141
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 214 WKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF--RHVHLVAFEKSDLLFVCMLK 271
W P G++ ED A+R +EE G++ L ++ R ++ VA K + + +
Sbjct: 43 WTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAE 102
Query: 272 PLSFEITI-YEKEIQAAKWMPLEE 294
+++ I E QA +W+ LEE
Sbjct: 103 VKDYDVEIRLSHEHQAYRWLGLEE 126
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
+ GG + D EVL++K + S +W P G I E AVREV EETGV
Sbjct: 2 KKEFSAGGVLFKD-GEVLLIK-----TPSNVWSFPKGNIEPGEKPEETAVREVWEETGVK 55
Query: 243 TIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEK-------EIQAAKWMPLEE 294
L+ + +H K + +F K + + + Y++ E++ AK+ P++E
Sbjct: 56 GEILDYIG--EIHYWYTLKGERIF----KTVKYYLMKYKEGEPRPSWEVKDAKFFPIKE 108
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 195 DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
D+ +VL+++ K W +P G++N++E +RE KEETGV
Sbjct: 54 DQLKVLLIQRKG-HPFRNSWALPGGFVNRNESTEDSVLRETKEETGV 99
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
++ VG +MN+ +++ W++P G I++ ED + A+RE++EETGV
Sbjct: 12 GYRRNVGICLMNNDKKIFAASR---LDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVT 68
Query: 243 T 243
+
Sbjct: 69 S 69
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
+I V G +M D V K ++ SG W P G I+K E A+REV EETG D
Sbjct: 95 RIPVRGAIMLDMSMQQCVLVKGWKASSG-WGFPKGKIDKDESDVDCAIREVYEETGFD 151
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
+I V G +M D V K ++ SG W P G I+K E A+REV EETG D
Sbjct: 100 RIPVRGAIMLDMSMQQCVLVKGWKASSG-WGFPKGKIDKDESDVDCAIREVYEETGFD 156
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 198 EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVH 255
++L+V+E G+W +P G+ + + + V+EVKEE G+D +VA H
Sbjct: 82 KILLVQEN-----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKH 134
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 169 YWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLF 228
+WIPV V GF+ D + +LV + S +G W+ P G I E
Sbjct: 20 HWIPV--------------VAGFLRKDGK-ILVGQRPENNSLAGQWEFPGGKIENGETPE 64
Query: 229 SGAVREVKEETGVDTIFLEM 248
RE+ EE G++ E+
Sbjct: 65 EALARELNEELGIEAEVGEL 84
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
+ L E P G W +P G+++++E A RE++EET + I
Sbjct: 52 KRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDI 99
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 192 VMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF 251
V++ + + LVV+E + +W P G++ E L A RE+ EETG+ +
Sbjct: 11 VVHAEGKFLVVEETI--NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFI-- 66
Query: 252 RHVHLVAFEKS---------DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
R +A +K+ +L +C +P ++ +I +W+ EE ++
Sbjct: 67 RMHQWIAPDKTPFLRFLFAIELEQICPTQP-------HDSDIDCCRWVSAEEILQ 114
>pdb|2QJO|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|C Chain C, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp
Length = 341
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 198 EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEET 239
VL+V+ + + G+ +P G+I ++E L G +RE+KEET
Sbjct: 215 HVLMVRRQA-KPGLGLIALPGGFIKQNETLVEGMLRELKEET 255
>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ5|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ6|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
pdb|3GZ6|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
Length = 240
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKS--EDLFSGAVREVKEETGVDTIFLEM 248
F +D++ +++ ++ G+W +P G+I+++ E L +R++ E+T V ++E
Sbjct: 30 FTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQ 89
Query: 249 VAFRHVHLVAFEKSDL----LFVCMLKPLSFE-ITIYEKEIQAAKWMPLEEFVKQPF 300
+ V D + VC +S++ I + KW PL + ++ P
Sbjct: 90 LC-----TVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPL 141
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 206 CPRSCS---GMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA 250
C R+ + G W +P G+ +E L GA RE EE E+ A
Sbjct: 56 CKRAIAPYRGKWTLPAGFXENNETLVQGAARETLEEANARVEIRELYA 103
>pdb|3GZ8|A Chain A, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|B Chain B, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|C Chain C, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|D Chain D, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
Length = 162
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKS--EDLFSGAVREVKEETGVDTIFLEM 248
F +D++ +++ ++ G+W +P G+I+++ E L +R++ E+T V ++E
Sbjct: 30 FTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQ 89
Query: 249 VAFRHVHLVAFEKSDL----LFVCMLKPLSFE-ITIYEKEIQAAKWMPLEEFVKQPF 300
+ V D + VC +S++ I + KW PL + ++ P
Sbjct: 90 LC-----TVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPL 141
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 211 SGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
S W P G I+K E+ +REVKEE G D
Sbjct: 27 SDSWSFPRGKISKDENDIDCCIREVKEEIGFD 58
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal Complex,
Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
Length = 129
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
QI VG + N+ E+ + + + + P G I E VRE++EE G+
Sbjct: 5 QIAVG-IIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITP- 62
Query: 245 FLEMVAFRHVHLVAFEKSDLLFVCMLKPLSF------EITIYEKEIQAAKWMPL 292
H FEK + F L F E + KE Q +WM L
Sbjct: 63 ---------QHFSLFEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQPGEWMSL 107
>pdb|2FB1|A Chain A, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|B Chain B, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|C Chain C, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|D Chain D, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
Length = 226
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA 250
F N+ L++ ++ G W + G++ K E + A R + E TG++ ++ E V
Sbjct: 21 FGFNEGEISLLLLKRNFEPAXGEWSLXGGFVQKDESVDDAAKRVLAELTGLENVYXEQVG 80
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 194 NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH 253
D + VL+++ R W+ TG + + E A+REVKEE +D + ++
Sbjct: 19 QDTKRVLMLQR---RDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDC 75
Query: 254 VHLVAFE 260
V FE
Sbjct: 76 QRTVEFE 82
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 214 WKIPTGYINKSEDLFSGAVREVKEETGV 241
W P G+++ ED + A+RE KEE +
Sbjct: 32 WTPPKGHVDPGEDEWQAAIRETKEEANI 59
>pdb|2GT4|A Chain A, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose
Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2
pdb|2GT4|B Chain B, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose
Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2
pdb|2GT4|C Chain C, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose
Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2
Length = 160
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD---TIFLE 247
F++ + R ++ ++ R G W +P G + K E L + R E G+ T
Sbjct: 23 FIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF 82
Query: 248 MVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEI 284
++H + F +D F L F + E+E+
Sbjct: 83 YGVWQHFYDDNFSGTD--FTTHFVVLGFRFRVSEEEL 117
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 209 SCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
S G + +P G N+ E +RE++EETG+
Sbjct: 34 SRGGRYNLPGGKANRGELRSQALIREIREETGL 66
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
+ V + D + +LV E+ PR + P G++ E + REV EETG +
Sbjct: 9 VTVAAVIEQDDKYLLV--EEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLP 66
Query: 246 LEMVAFRHVHLVAFEKSDLLFVCMLKPLSFE-ITIYEKEIQAAKWMPLEEF 295
+ H + + L F + +SF+ + I A W ++E
Sbjct: 67 EVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEI 117
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
H+ V + + R +L V++ P +IP G I ED A RE+ EETG+
Sbjct: 32 EHKPAVAVIALREGR-MLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGL 89
>pdb|1RYA|A Chain A, Crystal Structure Of The E. Coli Gdp-Mannose Mannosyl
Hydrolase In Complex With Gdp And Mg
pdb|1RYA|B Chain B, Crystal Structure Of The E. Coli Gdp-Mannose Mannosyl
Hydrolase In Complex With Gdp And Mg
pdb|2GT2|A Chain A, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
pdb|2GT2|B Chain B, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
pdb|2GT2|C Chain C, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
pdb|2GT2|D Chain D, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
Length = 160
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD---TIFLE 247
F++ + R ++ ++ R G W +P G + K E L + R E G+ T
Sbjct: 23 FIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF 82
Query: 248 MVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEI 284
++H + F +D F L F + E+E+
Sbjct: 83 YGVWQHFYDDNFSGTD--FTTHYVVLGFRFRVSEEEL 117
>pdb|2I8T|A Chain A, Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp-Mannose Complex
pdb|2I8T|B Chain B, Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp-Mannose Complex
pdb|2I8U|A Chain A, Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp Product Complex
pdb|2I8U|B Chain B, Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp Product Complex
Length = 167
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD---TIFLE 247
F++ + R ++ ++ R G W +P G + K E L + R E G+ T
Sbjct: 23 FIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF 82
Query: 248 MVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEI 284
++H + F +D F L F + E+E+
Sbjct: 83 YGVWQHFYDDNFSGTD--FTTHYVVLGFRFRVAEEEL 117
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 192 VMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF 251
++ D +VL++++ PR G W P G + E + RE EETG+ E+
Sbjct: 10 IVVDHDQVLLLQK--PRR--GWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGI 65
Query: 252 RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEI 284
+V F++ ++ ML +F+ T +E E+
Sbjct: 66 --FSMVIFDEGKIVSEWML--FTFKATEHEGEM 94
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
H+ V + + R +L V++ P +IP G I ED A RE+ E+TG+
Sbjct: 32 EHKPAVAVIALREGR-MLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL 89
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
H+ V + + R +L V++ P +IP G I ED A R++ EETG+
Sbjct: 32 EHKPAVAVIALREGR-MLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRQLAEETGL 89
>pdb|3ID9|A Chain A, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
pdb|3ID9|B Chain B, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
Length = 171
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 25/151 (16%)
Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
Q+ V G ++ D++ VL+VK+K W +P G + E L +RE +EETG++
Sbjct: 23 QVRVTGILIEDEK-VLLVKQKVANRD---WSLPGGRVENGETLEEAXIREXREETGLE-- 76
Query: 245 FLEMVAFRHVHLVAFEKSDLLFVC---MLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301
V +K LL+VC P IT + I+ +P EF P +
Sbjct: 77 ------------VKIKK--LLYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIH 122
Query: 302 LEDDMSRKVIDICIKAYDDRFNGFIAHELAS 332
D + ++ + + F I+ LA+
Sbjct: 123 --DVQXVPINELSYYGFSETFINLISGGLAN 151
>pdb|3FXT|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|E Chain E, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|F Chain F, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|G Chain G, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|H Chain H, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
Length = 113
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 97 DEYDGVIINPENLPS----SANAFVSALRASLSNXXXXXXXXXXXXILSKQADLVPIAIQ 152
D + G+ + L + A AF L+A++ I Q+ + A
Sbjct: 30 DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 89
Query: 153 EGFSYHHAEPGYVMLTYWIPVEP 175
GF +HHAE LT W+ P
Sbjct: 90 LGFCFHHAESDSSTLTLWLREGP 112
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA 250
V+ +R +L +K++ +G W G + + E + GA RE++EE+G L + A
Sbjct: 31 LVLQPQRVLLGMKKRG--FGAGRWNGFGGKVQEGETIEDGARRELQEESG-----LTVDA 83
Query: 251 FRHVHLVAFE 260
V + FE
Sbjct: 84 LHKVGQIVFE 93
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 192 VMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
++ND +L+V+ K +W +P G++ E + +RE+ EET ++
Sbjct: 216 IVND--HILMVQRKA-HPGKDLWALPGGFLECDETIAQAIIRELFEETNIN 263
>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool
Sanitization Enzyme
pdb|3ZR0|A Chain A, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR0|B Chain B, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR1|A Chain A, Crystal Structure Of Human Mth1
pdb|3ZR1|B Chain B, Crystal Structure Of Human Mth1
Length = 156
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA 250
V+ +R +L +K++ +G W G + + E + GA RE++EE+G L + A
Sbjct: 11 LVLQPQRVLLGMKKRG--FGAGRWNGFGGKVQEGETIEDGARRELQEESG-----LTVDA 63
Query: 251 FRHVHLVAFE 260
V + FE
Sbjct: 64 LHKVGQIVFE 73
>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase
pdb|3Q1P|B Chain B, Crystal Structure Of Cdp-Chase
Length = 205
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 168 TYWIPVEPCMLP--GSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSE 225
T W VE G + ++ + V +++ +L VKEK G W +P G+ +
Sbjct: 49 TDWEVVEKLFASETGYQTPKVDIRAVVFQNEK-LLFVKEKS----DGKWALPGGWADVGY 103
Query: 226 DLFSGAVREVKEETGVDTIFLEMVA 250
A +EV EETG + +++A
Sbjct: 104 TPTEVAAKEVFEETGYEVDHFKLLA 128
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 168 TYWIPVEPCML--PGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSE 225
T W VE G + ++ + V +++ +L VKEK G W +P G+ +
Sbjct: 49 TDWEVVEKLFASETGYQTPKVDIRAVVFQNEK-LLFVKEKS----DGKWALPGGWADVGY 103
Query: 226 DLFSGAVREVKEETGVDTIFLEMVA 250
A +EV EETG + +++A
Sbjct: 104 TPTEVAAKEVFEETGYEVDHFKLLA 128
>pdb|3K5L|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp Lt(0,
3) Ternary Complex
pdb|3K5M|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Ddgtp Lt(-2,
2) Ternary Complex
pdb|3K5N|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna Binary
Complex
pdb|3K5N|B Chain B, Crystal Structure Of E.Coli Pol Ii-Abasic Dna Binary
Complex
pdb|3K5O|A Chain A, Crystal Structure Of E.Coli Pol Ii
pdb|3K5O|B Chain B, Crystal Structure Of E.Coli Pol Ii
pdb|3K57|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Datp Ternary
Complex
pdb|3K58|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Dttp Ternary
Complex
pdb|3K59|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Dctp Ternary
Complex
pdb|3MAQ|A Chain A, Crystal Structure Of E.coli Pol Ii-normal Dna-dgtp Ternary
Complex
Length = 786
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 277 ITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSR-KVIDICIKAYDDRFN--GFIAHELASK 333
+T+YE +++ + +E F+ P ++E DM +++ +K + D +++ ++ +
Sbjct: 104 VTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT 163
Query: 334 LDGKLSCL 341
G+L C+
Sbjct: 164 RHGELYCI 171
>pdb|1Q8I|A Chain A, Crystal Structure Of Escherichia Coli Dna Polymerase Ii
Length = 783
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 277 ITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSR-KVIDICIKAYDDRFN--GFIAHELASK 333
+T+YE +++ + +E F+ P ++E DM +++ +K + D +++ ++ +
Sbjct: 101 VTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT 160
Query: 334 LDGKLSCL 341
G+L C+
Sbjct: 161 RHGELYCI 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,935,268
Number of Sequences: 62578
Number of extensions: 387926
Number of successful extensions: 768
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 53
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)