Query 019077
Match_columns 346
No_of_seqs 354 out of 2085
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:29:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0648 Predicted NUDIX hydrol 100.0 7.3E-44 1.6E-48 332.3 13.6 265 81-345 11-278 (295)
2 cd04670 Nudix_Hydrolase_12 Mem 99.9 4.8E-22 1E-26 166.3 13.1 126 184-313 1-126 (127)
3 PRK00241 nudC NADH pyrophospha 99.8 3.2E-20 7E-25 174.1 13.0 176 131-317 71-255 (256)
4 cd04679 Nudix_Hydrolase_20 Mem 99.8 3.1E-19 6.8E-24 148.9 13.9 111 185-298 2-115 (125)
5 cd03430 GDPMH GDP-mannose glyc 99.8 3.9E-19 8.4E-24 152.9 14.8 115 183-300 10-134 (144)
6 PRK15434 GDP-mannose mannosyl 99.8 1E-18 2.2E-23 152.9 15.5 113 185-300 17-139 (159)
7 cd03671 Ap4A_hydrolase_plant_l 99.8 5.9E-19 1.3E-23 151.9 13.1 117 184-303 2-136 (147)
8 cd04684 Nudix_Hydrolase_25 Con 99.8 8.3E-19 1.8E-23 145.8 13.6 113 186-302 1-121 (128)
9 PRK09438 nudB dihydroneopterin 99.8 6.7E-19 1.5E-23 151.4 12.6 126 184-318 6-146 (148)
10 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 8E-19 1.7E-23 148.5 12.7 118 185-302 2-119 (137)
11 COG2816 NPY1 NTP pyrophosphohy 99.8 9.4E-20 2E-24 170.0 7.2 161 132-300 83-253 (279)
12 cd04680 Nudix_Hydrolase_21 Mem 99.8 6.8E-19 1.5E-23 145.1 11.4 108 187-300 2-110 (120)
13 cd04681 Nudix_Hydrolase_22 Mem 99.8 1.7E-18 3.7E-23 145.1 13.7 107 187-296 3-113 (130)
14 cd04678 Nudix_Hydrolase_19 Mem 99.8 2.2E-18 4.7E-23 144.4 14.2 113 185-298 2-117 (129)
15 PRK00714 RNA pyrophosphohydrol 99.8 2.1E-18 4.6E-23 150.3 14.5 127 183-312 6-149 (156)
16 cd04696 Nudix_Hydrolase_37 Mem 99.8 2.1E-18 4.6E-23 144.0 13.9 112 185-302 2-118 (125)
17 cd03673 Ap6A_hydrolase Diadeno 99.8 1.7E-18 3.7E-23 144.5 12.9 120 186-314 2-129 (131)
18 cd04673 Nudix_Hydrolase_15 Mem 99.8 2.8E-18 6.1E-23 141.6 14.0 113 186-303 1-119 (122)
19 PRK15472 nucleoside triphospha 99.8 2E-18 4.2E-23 147.3 13.2 117 187-304 5-131 (141)
20 PF00293 NUDIX: NUDIX domain; 99.8 2.8E-18 6.1E-23 143.0 13.9 118 185-302 2-123 (134)
21 cd04669 Nudix_Hydrolase_11 Mem 99.8 3.6E-18 7.9E-23 142.3 14.2 108 187-302 2-118 (121)
22 PLN02325 nudix hydrolase 99.8 1.6E-18 3.5E-23 149.2 12.2 119 180-300 4-127 (144)
23 cd04676 Nudix_Hydrolase_17 Mem 99.8 4.2E-18 9.2E-23 141.2 14.1 112 185-302 2-121 (129)
24 cd04683 Nudix_Hydrolase_24 Mem 99.8 3.3E-18 7.1E-23 141.4 13.2 111 187-300 2-116 (120)
25 cd03427 MTH1 MutT homolog-1 (M 99.8 7.1E-18 1.5E-22 142.6 15.1 122 188-315 4-125 (137)
26 cd03674 Nudix_Hydrolase_1 Memb 99.8 6E-18 1.3E-22 144.1 14.7 121 186-315 3-137 (138)
27 cd04700 DR1025_like DR1025 fro 99.8 5.5E-18 1.2E-22 145.2 14.3 119 181-301 9-128 (142)
28 cd04677 Nudix_Hydrolase_18 Mem 99.8 3.8E-18 8.2E-23 143.0 12.7 114 182-301 4-125 (132)
29 cd04672 Nudix_Hydrolase_14 Mem 99.8 6.9E-18 1.5E-22 140.6 14.0 111 185-303 2-117 (123)
30 cd04682 Nudix_Hydrolase_23 Mem 99.8 3.2E-18 6.8E-23 142.4 11.9 113 188-301 3-117 (122)
31 cd03675 Nudix_Hydrolase_2 Cont 99.8 8.4E-18 1.8E-22 141.7 14.3 126 187-316 2-129 (134)
32 PRK10546 pyrimidine (deoxy)nuc 99.8 1.4E-17 3E-22 140.4 15.1 124 187-317 5-128 (135)
33 cd03672 Dcp2p mRNA decapping e 99.8 3.3E-18 7.2E-23 147.4 11.1 111 186-301 2-114 (145)
34 cd04671 Nudix_Hydrolase_13 Mem 99.8 1.2E-17 2.7E-22 139.8 13.7 109 187-302 2-113 (123)
35 cd04687 Nudix_Hydrolase_28 Mem 99.8 1.2E-17 2.7E-22 139.9 13.6 114 186-302 2-125 (128)
36 COG1051 ADP-ribose pyrophospha 99.8 1.7E-17 3.6E-22 143.2 14.0 119 181-301 6-125 (145)
37 cd03429 NADH_pyrophosphatase N 99.8 1.4E-17 3E-22 140.8 13.0 106 187-298 2-107 (131)
38 PRK10776 nucleoside triphospha 99.8 3.7E-17 8E-22 135.9 15.2 121 187-314 6-126 (129)
39 cd04691 Nudix_Hydrolase_32 Mem 99.7 1.9E-17 4.2E-22 137.1 12.6 106 188-299 3-109 (117)
40 cd04688 Nudix_Hydrolase_29 Mem 99.7 3.2E-17 7E-22 136.8 13.9 110 186-302 2-122 (126)
41 cd04697 Nudix_Hydrolase_38 Mem 99.7 1.3E-17 2.8E-22 139.8 11.6 111 187-300 2-114 (126)
42 cd04699 Nudix_Hydrolase_39 Mem 99.7 1.4E-17 3.1E-22 138.5 11.2 113 186-301 2-117 (129)
43 cd03426 CoAse Coenzyme A pyrop 99.7 1.5E-17 3.3E-22 145.0 11.7 112 187-299 4-119 (157)
44 cd04511 Nudix_Hydrolase_4 Memb 99.7 6.2E-17 1.4E-21 136.3 14.2 113 177-296 5-117 (130)
45 TIGR00586 mutt mutator mutT pr 99.7 1.1E-16 2.5E-21 133.2 14.7 115 186-304 5-119 (128)
46 cd04693 Nudix_Hydrolase_34 Mem 99.7 2.5E-17 5.4E-22 137.9 10.7 110 187-300 2-115 (127)
47 cd04695 Nudix_Hydrolase_36 Mem 99.7 5.1E-17 1.1E-21 137.0 12.1 114 188-305 2-121 (131)
48 cd04664 Nudix_Hydrolase_7 Memb 99.7 5.6E-17 1.2E-21 135.9 12.1 112 187-302 3-122 (129)
49 cd03425 MutT_pyrophosphohydrol 99.7 1.4E-16 3E-21 130.8 14.2 113 188-304 4-116 (124)
50 cd04689 Nudix_Hydrolase_30 Mem 99.7 8.7E-17 1.9E-21 134.1 12.9 108 186-298 2-114 (125)
51 cd04690 Nudix_Hydrolase_31 Mem 99.7 9.2E-17 2E-21 132.2 12.8 107 188-302 3-114 (118)
52 PRK15393 NUDIX hydrolase YfcD; 99.7 1E-16 2.2E-21 143.0 13.6 129 186-320 38-170 (180)
53 cd03428 Ap4A_hydrolase_human_l 99.7 8.3E-17 1.8E-21 134.7 11.3 119 186-314 3-128 (130)
54 cd04667 Nudix_Hydrolase_10 Mem 99.7 1.7E-16 3.7E-21 130.0 11.7 103 190-303 4-106 (112)
55 cd04686 Nudix_Hydrolase_27 Mem 99.7 1.8E-16 3.9E-21 133.9 12.0 107 187-298 2-119 (131)
56 cd04692 Nudix_Hydrolase_33 Mem 99.7 1.6E-16 3.4E-21 136.2 11.3 113 186-298 3-127 (144)
57 PRK11762 nudE adenosine nucleo 99.7 5.3E-16 1.2E-20 138.8 14.6 115 186-301 48-162 (185)
58 cd04694 Nudix_Hydrolase_35 Mem 99.7 3.1E-16 6.7E-21 134.9 12.1 113 186-298 2-131 (143)
59 cd04666 Nudix_Hydrolase_9 Memb 99.7 4E-16 8.7E-21 130.6 12.3 108 188-301 3-118 (122)
60 cd02885 IPP_Isomerase Isopente 99.7 3.6E-16 7.8E-21 137.3 11.4 114 185-301 30-151 (165)
61 PLN03143 nudix hydrolase; Prov 99.6 1.5E-15 3.3E-20 144.2 13.4 222 45-299 16-266 (291)
62 TIGR02150 IPP_isom_1 isopenten 99.6 1E-15 2.2E-20 133.6 11.0 113 185-302 27-146 (158)
63 PRK03759 isopentenyl-diphospha 99.6 1.2E-15 2.6E-20 136.4 11.6 113 185-300 34-154 (184)
64 cd02883 Nudix_Hydrolase Nudix 99.6 4E-15 8.7E-20 120.9 13.5 112 187-302 2-116 (123)
65 cd04685 Nudix_Hydrolase_26 Mem 99.6 2.3E-15 5E-20 127.9 11.4 116 187-302 2-129 (133)
66 PRK05379 bifunctional nicotina 99.6 4.6E-15 9.9E-20 144.8 14.6 116 181-298 199-322 (340)
67 TIGR00052 nudix-type nucleosid 99.6 9.4E-15 2E-19 131.0 12.5 116 185-300 44-167 (185)
68 cd04661 MRP_L46 Mitochondrial 99.6 5E-15 1.1E-19 125.4 9.9 99 195-299 11-121 (132)
69 PRK10707 putative NUDIX hydrol 99.6 2E-14 4.3E-19 129.3 13.5 113 186-299 31-147 (190)
70 PRK10729 nudF ADP-ribose pyrop 99.6 3.5E-14 7.6E-19 128.9 14.9 115 186-300 50-173 (202)
71 PRK08999 hypothetical protein; 99.6 3.1E-14 6.6E-19 137.1 14.6 114 187-304 7-120 (312)
72 KOG3084 NADH pyrophosphatase I 99.6 7.1E-16 1.5E-20 144.7 2.2 115 178-297 180-297 (345)
73 PRK15009 GDP-mannose pyrophosp 99.5 2E-13 4.2E-18 123.0 14.1 114 186-300 46-168 (191)
74 cd03676 Nudix_hydrolase_3 Memb 99.5 7.1E-14 1.5E-18 124.3 11.0 108 190-298 39-158 (180)
75 cd04674 Nudix_Hydrolase_16 Mem 99.5 4E-13 8.7E-18 111.9 13.1 57 187-245 6-62 (118)
76 cd04665 Nudix_Hydrolase_8 Memb 99.5 2.6E-13 5.6E-18 113.1 11.8 100 188-295 3-102 (118)
77 cd04662 Nudix_Hydrolase_5 Memb 99.5 3E-13 6.5E-18 113.6 12.2 104 187-292 2-126 (126)
78 TIGR02705 nudix_YtkD nucleosid 99.5 9.4E-13 2E-17 114.7 15.7 125 184-319 23-151 (156)
79 PLN02709 nudix hydrolase 99.5 5.1E-13 1.1E-17 122.3 13.2 114 186-299 34-156 (222)
80 cd03670 ADPRase_NUDT9 ADP-ribo 99.4 2.6E-12 5.6E-17 115.0 12.6 111 197-316 49-184 (186)
81 PLN02552 isopentenyl-diphospha 99.4 3.6E-12 7.7E-17 118.9 13.8 130 186-316 57-225 (247)
82 cd04663 Nudix_Hydrolase_6 Memb 99.4 2.8E-12 6.1E-17 107.9 11.6 52 188-244 3-56 (126)
83 COG0494 MutT NTP pyrophosphohy 99.3 8.3E-11 1.8E-15 97.5 13.0 102 197-301 24-137 (161)
84 PLN02791 Nudix hydrolase homol 99.3 5.2E-11 1.1E-15 125.9 13.8 113 186-298 33-158 (770)
85 cd03431 DNA_Glycosylase_C DNA 99.2 3.2E-10 7E-15 92.5 12.5 110 190-312 7-116 (118)
86 KOG2839 Diadenosine and diphos 99.2 1.2E-10 2.6E-15 98.6 8.1 111 185-299 9-126 (145)
87 KOG3069 Peroxisomal NUDIX hydr 98.9 2.6E-09 5.7E-14 97.1 7.8 113 186-298 44-163 (246)
88 KOG3041 Nucleoside diphosphate 98.9 1E-08 2.2E-13 90.8 11.3 100 197-298 88-194 (225)
89 PF14815 NUDIX_4: NUDIX domain 98.9 1.2E-08 2.6E-13 83.8 10.2 106 190-302 2-107 (114)
90 COG1443 Idi Isopentenyldiphosp 98.8 9.7E-09 2.1E-13 89.6 7.9 116 186-302 34-157 (185)
91 PLN02839 nudix hydrolase 98.7 5.2E-07 1.1E-11 88.0 15.5 112 186-297 206-326 (372)
92 COG4119 Predicted NTP pyrophos 98.4 2.4E-06 5.3E-11 70.9 9.1 120 187-310 5-147 (161)
93 KOG4195 Transient receptor pot 97.8 0.00013 2.9E-09 66.1 8.9 40 197-240 139-178 (275)
94 KOG0142 Isopentenyl pyrophosph 97.7 7.5E-05 1.6E-09 66.8 5.6 130 186-316 53-204 (225)
95 PRK10880 adenine DNA glycosyla 97.4 0.0008 1.7E-08 66.2 9.8 113 186-313 231-343 (350)
96 COG4112 Predicted phosphoester 97.4 0.0012 2.5E-08 57.4 8.8 107 190-297 66-186 (203)
97 KOG2937 Decapping enzyme compl 97.0 9.7E-05 2.1E-09 70.7 -1.1 106 184-296 81-190 (348)
98 PRK13910 DNA glycosylase MutY; 95.4 0.1 2.3E-06 50.1 9.7 29 188-218 189-217 (289)
99 KOG4432 Uncharacterized NUDIX 94.9 0.086 1.9E-06 50.2 7.2 114 186-299 230-377 (405)
100 KOG4432 Uncharacterized NUDIX 94.9 0.043 9.4E-07 52.2 5.2 86 186-271 27-140 (405)
101 KOG4313 Thiamine pyrophosphoki 94.4 0.14 3E-06 47.6 7.2 109 186-295 134-255 (306)
102 COG1194 MutY A/G-specific DNA 93.9 0.18 3.9E-06 49.3 7.1 112 178-313 228-339 (342)
103 PF13869 NUDIX_2: Nucleotide h 93.5 0.2 4.4E-06 45.0 6.2 41 197-242 58-98 (188)
104 KOG1689 mRNA cleavage factor I 90.2 0.56 1.2E-05 41.2 5.0 39 197-240 84-122 (221)
105 TIGR01084 mutY A/G-specific ad 85.1 1.9 4.1E-05 41.1 5.8 32 188-219 230-261 (275)
106 KOG4548 Mitochondrial ribosoma 83.0 4 8.7E-05 38.2 6.7 98 197-299 139-248 (263)
107 COG4111 Uncharacterized conser 80.6 7.2 0.00016 36.7 7.4 56 186-249 26-82 (322)
108 PF03487 IL13: Interleukin-13; 43.5 21 0.00045 23.9 2.0 24 216-239 13-36 (43)
109 KOG0558 Dihydrolipoamide trans 43.1 8.4 0.00018 37.9 0.2 37 1-37 1-38 (474)
110 PF12860 PAS_7: PAS fold 40.9 12 0.00026 29.8 0.7 43 187-233 5-47 (115)
111 KOG2937 Decapping enzyme compl 36.3 9.5 0.00021 37.2 -0.6 66 176-244 229-296 (348)
112 PF14443 DBC1: DBC1 36.0 81 0.0018 26.6 4.9 35 211-245 23-60 (126)
113 cd09232 Snurportin-1_C C-termi 31.2 20 0.00044 32.1 0.7 69 163-231 4-78 (186)
114 PF07026 DUF1317: Protein of u 22.1 2.3E+02 0.0051 20.6 4.6 16 211-226 21-36 (60)
No 1
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-44 Score=332.30 Aligned_cols=265 Identities=45% Similarity=0.797 Sum_probs=250.7
Q ss_pred CCCCCCccccccCCccCCCCcEEeCCCCCCCChHHHHHHHHHHhHHhHhcCceeEEEEccccccCchHHHHhcccceecC
Q 019077 81 DITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHA 160 (346)
Q Consensus 81 ~~~~~~~~~~~~~~~~d~~~g~~v~~~~~~~~~~~f~~~l~~sl~~w~~~~~r~vw~~l~~~~~~l~~~a~~~gf~~H~~ 160 (346)
...++++..+.+.+..|+|+||+++....+-|...|.+.|++|+.+|+.+|++++|++++...+++++.|++.||.+||+
T Consensus 11 ~~~~~~~~~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHa 90 (295)
T KOG0648|consen 11 RMDSMSVGSSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHA 90 (295)
T ss_pred CCCccccchhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecc
Confidence 45567888899999999999999999766669999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeeccccCCCCCCCCCCccceEEEEEEEeCCCeEEEEeec-CCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHh
Q 019077 161 EPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIPTGYINKSEDLFSGAVREVKEET 239 (346)
Q Consensus 161 ~~~~~~l~~wl~~~~~~lp~~~~~~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EET 239 (346)
+..|+|++.|++..+.++|.++.|+++|+++|+|.+++||++++. +.....|.|++|+|.|++||++.++|+||++|||
T Consensus 91 e~~~~~l~~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeet 170 (295)
T KOG0648|consen 91 ESLYVMLTSWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEET 170 (295)
T ss_pred cccceeeeeeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHh
Confidence 999999999999999999999999999999999988999999986 5666889999999999999999999999999999
Q ss_pred CCceeeeEEEEEEeeeccccc--eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHH
Q 019077 240 GVDTIFLEMVAFRHVHLVAFE--KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKA 317 (346)
Q Consensus 240 Gl~v~~~~ll~~~~~~~~~~~--~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~ 317 (346)
|++.++.+++.+++.|...+. ++++||+|.+++.+.+++.+..|+..++||+++++..+|..+...+++.+...|+++
T Consensus 171 gid~ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~Ic~~~ 250 (295)
T KOG0648|consen 171 GIDTEFVEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGICLNR 250 (295)
T ss_pred CcchhhhhHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhhhHHH
Confidence 999999999999999988777 899999999999999999999999999999999999999988777899999999999
Q ss_pred hcCCCCCccccccccccccccccceecC
Q 019077 318 YDDRFNGFIAHELASKLDGKLSCLYHND 345 (346)
Q Consensus 318 ~~~~~~g~~~~~l~~~f~~~~~~~y~~~ 345 (346)
+...|.|+....++.++..+..++|+|+
T Consensus 251 ~~~~~~~~~~~~l~~~~~~k~~~ly~~~ 278 (295)
T KOG0648|consen 251 LEEFYLGLTAIVLTTTYTGKESYLYYNE 278 (295)
T ss_pred HhhhcCCccceeccccccCccccccccc
Confidence 9999999999999999999999999985
No 2
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=4.8e-22 Score=166.31 Aligned_cols=126 Identities=56% Similarity=0.988 Sum_probs=100.7
Q ss_pred cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD 263 (346)
Q Consensus 184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~ 263 (346)
|.++|+++|+|++++|||++++.. .++.|.+|||++++||++.+||+||++||||+++.....++....+...+....
T Consensus 1 ~~~~~~~~v~~~~~~vLl~~r~~~--~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 78 (127)
T cd04670 1 HTVGVGGLVLNEKNEVLVVQERNK--TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSD 78 (127)
T ss_pred CeeEEEEEEEcCCCeEEEEEccCC--CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCcee
Confidence 568899999998899999988743 579999999999999999999999999999999988887776555544455667
Q ss_pred EEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHH
Q 019077 264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDI 313 (346)
Q Consensus 264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~ 313 (346)
++|+|.+......+..+++|+.+++|++++++.+.++.+. +.+.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~--~~~~~~~~ 126 (127)
T cd04670 79 LYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE--VNRLILDI 126 (127)
T ss_pred EEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH--HHHHHHhh
Confidence 7788877544444556678899999999999988877653 44444443
No 3
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.83 E-value=3.2e-20 Score=174.10 Aligned_cols=176 Identities=22% Similarity=0.260 Sum_probs=125.5
Q ss_pred CceeEEEEccccccCchHHHHhcccceecC--------CCceeEeeccccCCC-CCCCCCCccceEEEEEEEeCCCeEEE
Q 019077 131 GKKGVWLKILSKQADLVPIAIQEGFSYHHA--------EPGYVMLTYWIPVEP-CMLPGSPSHQIGVGGFVMNDKREVLV 201 (346)
Q Consensus 131 ~~r~vw~~l~~~~~~l~~~a~~~gf~~H~~--------~~~~~~l~~wl~~~~-~~lp~~~~~~v~V~avVin~~~~VLL 201 (346)
+.|.+ ..++..++.+...|. +...||.. .+....-.+|...|+ |....|+.+.++|.++|.+ +++|||
T Consensus 71 ~lr~~-~~~~~~~~~~~~~a~-~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~~c~~~~yp~~~paViv~V~~-~~~iLL 147 (256)
T PRK00241 71 SLRQL-LDLDDGLFQLLGRAV-QLAEFYRSHRFCGYCGHPMHPSKTEWAMLCPHCRERYYPRIAPCIIVAVRR-GDEILL 147 (256)
T ss_pred hhhhh-ccCCHHHHHHHHHHH-HHHHHhhcCccccccCCCCeecCCceeEECCCCCCEECCCCCCEEEEEEEe-CCEEEE
Confidence 45555 566667777766666 55566654 112222234444444 7777888888887766654 589999
Q ss_pred EeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEEEecCCccccCCc
Q 019077 202 VKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYE 281 (346)
Q Consensus 202 vrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~l~~~~~~i~~~~ 281 (346)
+++.+.+ .|.|.+|||++|+||++++||+||++||||+++...++++.... ... ....+.|.+.. .++++.+++
T Consensus 148 ~rr~~~~--~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~-~~p-~~lm~~f~a~~--~~~~~~~~~ 221 (256)
T PRK00241 148 ARHPRHR--NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPW-PFP-HSLMLGFHADY--DSGEIVFDP 221 (256)
T ss_pred EEccCCC--CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEee-cCC-CeEEEEEEEEe--cCCcccCCc
Confidence 9988553 68999999999999999999999999999999988888875422 221 22345555554 345677777
Q ss_pred cccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHH
Q 019077 282 KEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKA 317 (346)
Q Consensus 282 ~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~ 317 (346)
+|+.+++|+++++++.++.. ..+.+.+|+.+++.
T Consensus 222 ~Ei~~a~W~~~del~~lp~~--~sia~~li~~~~~~ 255 (256)
T PRK00241 222 KEIADAQWFRYDELPLLPPS--GTIARRLIEDTVAL 255 (256)
T ss_pred ccEEEEEEECHHHCcccCCc--hHHHHHHHHHHHHh
Confidence 89999999999999887643 34778888877653
No 4
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3.1e-19 Score=148.85 Aligned_cols=111 Identities=21% Similarity=0.340 Sum_probs=85.3
Q ss_pred ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc--cccee
Q 019077 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--AFEKS 262 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~--~~~~~ 262 (346)
+++|+++|++++++|||++|.+.. ..+.|.+|||++|+||++.+||+||++||||+++...++++....... .....
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~-~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAP-EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWV 80 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCC-CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEE
Confidence 578999999988999999997432 578999999999999999999999999999999988888775543322 11234
Q ss_pred EEEEEEEEecCCccc-cCCccccceEEEEchhhhhcC
Q 019077 263 DLLFVCMLKPLSFEI-TIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 263 ~~~fv~~l~~~~~~i-~~~~~Ei~~~~Wv~~eel~~l 298 (346)
.++|++... .+.. ..+++|+.+++|++++++.+.
T Consensus 81 ~~~f~~~~~--~~~~~~~~~~E~~~~~W~~~~~l~~~ 115 (125)
T cd04679 81 APVYLAENF--SGEPRLMEPDKLLELGWFALDALPQP 115 (125)
T ss_pred EEEEEEeec--CCccccCCCccccEEEEeCHHHCCch
Confidence 445666543 2222 234578999999999999763
No 5
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.81 E-value=3.9e-19 Score=152.88 Aligned_cols=115 Identities=22% Similarity=0.338 Sum_probs=87.3
Q ss_pred ccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee--EEEEEEeeecc---
Q 019077 183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL--EMVAFRHVHLV--- 257 (346)
Q Consensus 183 ~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~--~ll~~~~~~~~--- 257 (346)
++.++|+++|+|.+++|||+||.+. ..+|.|.+|||+|+.||++.+||+||++||||+++... ++++.......
T Consensus 10 ~p~v~v~~vI~~~~g~vLl~~R~~~-p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~ 88 (144)
T cd03430 10 TPLVSIDLIVENEDGQYLLGKRTNR-PAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNF 88 (144)
T ss_pred CCeEEEEEEEEeCCCeEEEEEccCC-CCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccc
Confidence 3468999999999899999999853 36799999999999999999999999999999998766 66665432111
Q ss_pred ---cc--ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077 258 ---AF--EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 258 ---~~--~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
.. ....++|.|... .+.+...++|+.+++|+++++++++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~ 134 (144)
T cd03430 89 FGDDFSTHYVVLGYVLKLS--SNELLLPDEQHSEYQWLTSDELLADDD 134 (144)
T ss_pred ccCCCccEEEEEEEEEEEc--CCcccCCchhccEeEEecHHHHhcCCC
Confidence 11 123344555443 344455678999999999999987643
No 6
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.80 E-value=1e-18 Score=152.85 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=84.5
Q ss_pred ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceee--eEEEEEEeeeccc----
Q 019077 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF--LEMVAFRHVHLVA---- 258 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~--~~ll~~~~~~~~~---- 258 (346)
.++|+++|++++++|||+||... ...|.|++|||+|++||++++||+||++||||+++.. .++++........
T Consensus 17 ~~~v~~vI~~~~g~VLL~kR~~~-~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 95 (159)
T PRK15434 17 LISLDFIVENSRGEFLLGKRTNR-PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSG 95 (159)
T ss_pred eEEEEEEEECCCCEEEEEEccCC-CCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCC
Confidence 46899999988899999999843 3679999999999999999999999999999998743 3555543222111
Q ss_pred --cc--eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077 259 --FE--KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 259 --~~--~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
+. ...++|.+.. ..+++.++++|+.+++|++++++..+..
T Consensus 96 ~~~~~~~i~~~f~~~~--~~g~~~~~~~E~~~~~W~~~~el~~~~~ 139 (159)
T PRK15434 96 TDFTTHYVVLGFRLRV--AEEDLLLPDEQHDDYRWLTPDALLASDN 139 (159)
T ss_pred CccceEEEEEEEEEEe--cCCcccCChHHeeEEEEEeHHHhhhccc
Confidence 11 2333444544 4556666677999999999999988644
No 7
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.80 E-value=5.9e-19 Score=151.91 Aligned_cols=117 Identities=26% Similarity=0.366 Sum_probs=88.6
Q ss_pred cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEe-----eecc-
Q 019077 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH-----VHLV- 257 (346)
Q Consensus 184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~-----~~~~- 257 (346)
++++|+++++|++++|||++|.+.. +.|.+|||++++||++.+||+||++||||+++....+++... ..+.
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~---~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~ 78 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP---GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPE 78 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC---CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhh
Confidence 3478999999998999999998543 899999999999999999999999999999987777765421 1110
Q ss_pred ---------ccceeEEEEEEEEecCCccccCC---ccccceEEEEchhhhhcCCCCCc
Q 019077 258 ---------AFEKSDLLFVCMLKPLSFEITIY---EKEIQAAKWMPLEEFVKQPFYLE 303 (346)
Q Consensus 258 ---------~~~~~~~~fv~~l~~~~~~i~~~---~~Ei~~~~Wv~~eel~~l~~~~~ 303 (346)
..+...++|++.+......+..+ ++|+.+++|++++++.++..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~ 136 (147)
T cd03671 79 LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFK 136 (147)
T ss_pred hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhh
Confidence 01234466677665423344443 46999999999999999876653
No 8
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.80 E-value=8.3e-19 Score=145.80 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=85.5
Q ss_pred eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc-c-----c
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV-A-----F 259 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~-~-----~ 259 (346)
++|.++|+++ ++|||+++.+.+ .++.|.+|||++|+||++.+||+||++||||+++....+++....... . .
T Consensus 1 ~~~~~ii~~~-~~vLl~~~~~~~-~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04684 1 FGAYAVIPRD-GKLLLIQKNGGP-YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA 78 (128)
T ss_pred CeeEEEEEeC-CEEEEEEccCCC-CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence 3677888876 899999998554 679999999999999999999999999999999988777765433211 1 1
Q ss_pred ceeEEEEEEEEecCCccc--cCCccccceEEEEchhhhhcCCCCC
Q 019077 260 EKSDLLFVCMLKPLSFEI--TIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 260 ~~~~~~fv~~l~~~~~~i--~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
....++|.|... .... ...++|..+++|++++++......+
T Consensus 79 ~~~~~~f~~~~~--~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~ 121 (128)
T cd04684 79 HHLCVFYDARVV--GGALPVQEPGEDSHGAAWLPLDEAIERLLSP 121 (128)
T ss_pred cEEEEEEEEEEe--cCccccCCCCCCceeeEEECHHHhhccCCCH
Confidence 234456666553 2222 3456788999999999998776654
No 9
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.80 E-value=6.7e-19 Score=151.41 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=90.2
Q ss_pred cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCce--eeeEEEEEEee-------
Q 019077 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT--IFLEMVAFRHV------- 254 (346)
Q Consensus 184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v--~~~~ll~~~~~------- 254 (346)
+.++|+++++|++++|||++|.. .++.|.+|||++|+||++.+||+||++||||+++ ....++.....
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~---~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 82 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD---DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFP 82 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC---CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccch
Confidence 56889999999999999998863 3579999999999999999999999999999998 43333321100
Q ss_pred ------eccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHh
Q 019077 255 ------HLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAY 318 (346)
Q Consensus 255 ------~~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~ 318 (346)
.........++|.|... . ...++.+|+.+++|++++++.++...+ ..+.+++.++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~f~~~~~--~-~~~~~~~E~~~~~W~~~~e~~~~~~~~---~~~~~l~~~~~~~ 146 (148)
T PRK09438 83 HWRHRYAPGVTRNTEHWFCLALP--H-ERPVVLTEHLAYQWLDAREAAALTKSW---SNAEAIEQLVIRL 146 (148)
T ss_pred hhhhccccccCCceeEEEEEecC--C-CCccccCcccceeeCCHHHHHHHhcCh---hHHHHHHHHHHHh
Confidence 00111234556666542 2 222334599999999999999987665 3466666666554
No 10
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.79 E-value=8e-19 Score=148.54 Aligned_cols=118 Identities=23% Similarity=0.155 Sum_probs=88.4
Q ss_pred ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL 264 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~ 264 (346)
..+|+++++++++++||+++.+.+..++.|.+|||++|.||++.+||+||++||||+++.....++..............
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 81 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERIH 81 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccEE
Confidence 46789999999999999998765556789999999999999999999999999999999766666543322221122334
Q ss_pred EEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077 265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
+|++...........++.|+.+++|++++++.++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 82 LFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred EEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 55555532222145667889999999999998875543
No 11
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.79 E-value=9.4e-20 Score=169.97 Aligned_cols=161 Identities=22% Similarity=0.287 Sum_probs=123.8
Q ss_pred ceeEEEEccccccCchHHHHhcccceecC--------CCceeEeeccccCCC-CCCCCCCccceEEEEEEEeCCCeEEEE
Q 019077 132 KKGVWLKILSKQADLVPIAIQEGFSYHHA--------EPGYVMLTYWIPVEP-CMLPGSPSHQIGVGGFVMNDKREVLVV 202 (346)
Q Consensus 132 ~r~vw~~l~~~~~~l~~~a~~~gf~~H~~--------~~~~~~l~~wl~~~~-~~lp~~~~~~v~V~avVin~~~~VLLv 202 (346)
.|.+.-.++.....+...|+ +...||.. .+.+....+|...|+ |....||+..++|.++|++.+. +||.
T Consensus 83 lR~l~~~~~~~~~~~~~~a~-~l~~w~~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~~-ilLa 160 (279)
T COG2816 83 LRSLLTELDEGLFGLAARAV-QLLEWYRSHRFCGRCGTKTYPREGGWARVCPKCGHEHFPRIDPCVIVAVIRGDE-ILLA 160 (279)
T ss_pred HHHHhccCCHHHHHHHHHHH-HHHHHHhhCcCCCCCCCcCccccCceeeeCCCCCCccCCCCCCeEEEEEecCCc-eeec
Confidence 44444445555566666555 33444433 556666777777665 7888999999999888887655 8888
Q ss_pred eecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEEEecCCccccCCcc
Q 019077 203 KEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEK 282 (346)
Q Consensus 203 rr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~l~~~~~~i~~~~~ 282 (346)
++.++. +|++++.+|+||+|||+++|+.|||+||+||+++.+++++ +++++|.. .++..|.....+++|++|..
T Consensus 161 ~~~~h~--~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~---SQPWPfP~-SLMigf~aey~sgeI~~d~~ 234 (279)
T COG2816 161 RHPRHF--PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVG---SQPWPFPH-SLMLGFMAEYDSGEITPDEG 234 (279)
T ss_pred CCCCCC--CcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEe---ccCCCCch-hhhhhheeeeccccccCCcc
Confidence 888663 8999999999999999999999999999999999999888 56666663 34455555556788999999
Q ss_pred ccceEEEEchhh-hhcCCC
Q 019077 283 EIQAAKWMPLEE-FVKQPF 300 (346)
Q Consensus 283 Ei~~~~Wv~~ee-l~~l~~ 300 (346)
|+++++|++.+| ++.++-
T Consensus 235 Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 235 ELEDARWFSRDEVLPALPP 253 (279)
T ss_pred hhhhccccCHhHHhhhcCC
Confidence 999999999999 666653
No 12
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=6.8e-19 Score=145.05 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=82.9
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCcee-eeEEEEEEeeeccccceeEEE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI-FLEMVAFRHVHLVAFEKSDLL 265 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~-~~~ll~~~~~~~~~~~~~~~~ 265 (346)
+|.++|+|++++|||+++.. .+.|.+|||++++||++++||+||++||||+.+. ....++.............++
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~----~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTY----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIV 77 (120)
T ss_pred ceEEEEECCCCeEEEEEECC----CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEE
Confidence 57889999889999999873 3489999999999999999999999999999998 777776654433222333444
Q ss_pred EEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077 266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
|.|.. .......+++|+.+++|++++++++...
T Consensus 78 f~~~~--~~~~~~~~~~E~~~~~w~~~~~l~~~~~ 110 (120)
T cd04680 78 FRARA--DTQPVIRPSHEISEARFFPPDALPEPTT 110 (120)
T ss_pred EEecc--cCCCccCCcccEEEEEEECHHHCcccCC
Confidence 55543 3333345678999999999999988533
No 13
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.7e-18 Score=145.07 Aligned_cols=107 Identities=24% Similarity=0.463 Sum_probs=81.7
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc----cccee
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV----AFEKS 262 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~----~~~~~ 262 (346)
+|+++|++++++|||++|...+ .+|.|.+|||+++.||++.+||.||++||||+++....+++....... .....
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREP-GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL 81 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCC-CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence 5788889988999999987443 578999999999999999999999999999999987777654321111 11223
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEchhhhh
Q 019077 263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFV 296 (346)
Q Consensus 263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~ 296 (346)
.++|+|.+. ......+.+|+.+++|++++++.
T Consensus 82 ~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 82 DLFFVCQVD--DKPIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred EEEEEEEeC--CCCCcCChHHhheeEEecHHHCC
Confidence 446677653 33344556799999999999985
No 14
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.2e-18 Score=144.40 Aligned_cols=113 Identities=25% Similarity=0.367 Sum_probs=87.4
Q ss_pred ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec--ccccee
Q 019077 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL--VAFEKS 262 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~--~~~~~~ 262 (346)
+++|+++|+|++++|||++|... ...+.|.+|||++++||++.+||+||++||||+++...+.++...... ......
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~-~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS-HGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYV 80 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCC-CCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEE
Confidence 57899999999899999999843 367999999999999999999999999999999998877776543322 122245
Q ss_pred EEEEEEEEecCCcccc-CCccccceEEEEchhhhhcC
Q 019077 263 DLLFVCMLKPLSFEIT-IYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 263 ~~~fv~~l~~~~~~i~-~~~~Ei~~~~Wv~~eel~~l 298 (346)
.++|.|.......... .+.+|+.+++|++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 81 TIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 6677776643222222 14567889999999999987
No 15
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.79 E-value=2.1e-18 Score=150.32 Aligned_cols=127 Identities=22% Similarity=0.256 Sum_probs=93.0
Q ss_pred ccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee--------
Q 019077 183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV-------- 254 (346)
Q Consensus 183 ~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~-------- 254 (346)
.++++|+++|+|.+++|||+++.+ .++.|.+|||++++||++.+||.||++||||+++...++++....
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~---~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~ 82 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIG---QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPK 82 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcC---CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcH
Confidence 456789999999999999999973 248999999999999999999999999999999887777664310
Q ss_pred ------eccccceeEEEEEEEEecCCccccC---CccccceEEEEchhhhhcCCCCCccHHHHHHHH
Q 019077 255 ------HLVAFEKSDLLFVCMLKPLSFEITI---YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVID 312 (346)
Q Consensus 255 ------~~~~~~~~~~~fv~~l~~~~~~i~~---~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~ 312 (346)
.....+...++|++........+.+ +++|+.+++|++++++.++..+....+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~ 149 (156)
T PRK00714 83 RLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLK 149 (156)
T ss_pred HHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHH
Confidence 0001123456788876533334333 346899999999999998765544334444443
No 16
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.1e-18 Score=143.95 Aligned_cols=112 Identities=23% Similarity=0.383 Sum_probs=82.8
Q ss_pred ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc-cc--ce
Q 019077 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV-AF--EK 261 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~-~~--~~ 261 (346)
.++|+++|+|++++|||+|+.. +.|.|.+|||++++||++.+||+||++||||+++....++........ .+ ..
T Consensus 2 ~~~v~~~i~~~~~~iLL~r~~~---~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04696 2 LVTVGALIYAPDGRILLVRTTK---WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA 78 (125)
T ss_pred ccEEEEEEECCCCCEEEEEccC---CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCcc
Confidence 3678899999889999998752 468999999999999999999999999999999987776654322111 11 11
Q ss_pred e--EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077 262 S--DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 262 ~--~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
. .+.|.+.. ....+.. ++|+.+++|++++++.++++.+
T Consensus 79 ~~~~~~~~~~~--~~~~~~~-~~e~~~~~W~~~~el~~~~~~~ 118 (125)
T cd04696 79 HFVLFDFFART--DGTEVTP-NEEIVEWEWVTPEEALDYPLNS 118 (125)
T ss_pred EEEEEEEEEEe--cCCcccC-CcccceeEEECHHHHhcCCCCH
Confidence 2 22233433 2333333 4689999999999999998765
No 17
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.79 E-value=1.7e-18 Score=144.48 Aligned_cols=120 Identities=23% Similarity=0.379 Sum_probs=87.6
Q ss_pred eEEEEEEEeCC---CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc----c
Q 019077 186 IGVGGFVMNDK---REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV----A 258 (346)
Q Consensus 186 v~V~avVin~~---~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~----~ 258 (346)
.++++++++.+ ++|||+++.+ .+.|.+|||++++||++.+||.||++||||+++.....++....... .
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~----~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 77 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPR----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKR 77 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCC----CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCC
Confidence 46788888865 8999999973 37999999999999999999999999999999988777665433222 1
Q ss_pred cceeEEEEEEEEecCCccccC-CccccceEEEEchhhhhcCCCCCccHHHHHHHHHH
Q 019077 259 FEKSDLLFVCMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDIC 314 (346)
Q Consensus 259 ~~~~~~~fv~~l~~~~~~i~~-~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~ 314 (346)
......+|.+... ...... +++|+.+++|++++++.++...+ ..+.+++.+
T Consensus 78 ~~~~~~~~~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~ 129 (131)
T cd03673 78 VHKTVHWWLMRAL--GGEFTPQPDEEVDEVRWLPPDEARDRLSYP---NDRELLRAA 129 (131)
T ss_pred cceEEEEEEEEEc--CCCcccCCCCcEEEEEEcCHHHHHHHcCCH---hHHHHHHHh
Confidence 2234445555442 334443 57789999999999999875543 234555544
No 18
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=2.8e-18 Score=141.60 Aligned_cols=113 Identities=27% Similarity=0.471 Sum_probs=84.1
Q ss_pred eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc----cc-
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA----FE- 260 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~----~~- 260 (346)
++|+++|+++ ++|||++|.+. .+++.|.+|||++++||++++||+||++||||+++.....++........ ..
T Consensus 1 ~~v~~ii~~~-~~vLl~~r~~~-~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04673 1 VAVGAVVFRG-GRVLLVRRANP-PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEF 78 (122)
T ss_pred CcEEEEEEEC-CEEEEEEEcCC-CCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccce
Confidence 4677888875 79999999853 35789999999999999999999999999999998877777654433211 11
Q ss_pred -eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCc
Q 019077 261 -KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE 303 (346)
Q Consensus 261 -~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~ 303 (346)
...+.|.+.. ....+ ..++|+.+++|++++++.++++.+.
T Consensus 79 ~~~~~~~~~~~--~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~ 119 (122)
T cd04673 79 HYVLIDFLCRY--LGGEP-VAGDDALDARWVPLDELAALSLTES 119 (122)
T ss_pred EEEEEEEEEEe--CCCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence 2223344443 33443 3467899999999999999987764
No 19
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.78 E-value=2e-18 Score=147.33 Aligned_cols=117 Identities=16% Similarity=0.262 Sum_probs=80.2
Q ss_pred EEEEEEEeCCCeEEEEeec-CCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEe-----eeccccc
Q 019077 187 GVGGFVMNDKREVLVVKEK-CPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH-----VHLVAFE 260 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~-~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~-----~~~~~~~ 260 (346)
.+.+.+++.+++|||+||. .+...+|.|.+|||++|+||++.+||+||++||||+++....+..... .+....+
T Consensus 5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T PRK15472 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADG 84 (141)
T ss_pred eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCC
Confidence 3445555567899999987 344578999999999999999999999999999999876544321100 0111111
Q ss_pred ----eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCcc
Q 019077 261 ----KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED 304 (346)
Q Consensus 261 ----~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~ 304 (346)
...+++++.+...+..+.+ ++|+.+++|++++++.++++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l~~~~~~ 131 (141)
T PRK15472 85 RKEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHYDLNVAT 131 (141)
T ss_pred CceeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccccccHHH
Confidence 1122233333333444443 578999999999999999887654
No 20
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.78 E-value=2.8e-18 Score=142.97 Aligned_cols=118 Identities=28% Similarity=0.434 Sum_probs=91.8
Q ss_pred ceEEEEEEEeCCCeEEEEeecCCC-CCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccc---c
Q 019077 185 QIGVGGFVMNDKREVLVVKEKCPR-SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAF---E 260 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~~~~-~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~---~ 260 (346)
+.+|+++|++.+++|||++|.+.. ..++.|.+|||++++||++.+||+||+.||||+++.....+.......... +
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG 81 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence 478999999998999999999543 367999999999999999999999999999999997666665443333222 2
Q ss_pred eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077 261 KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 261 ~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
...++|++.+.........+..|+.+++|++++++.++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 123 (134)
T PF00293_consen 82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG 123 (134)
T ss_dssp EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence 455666666654333455555699999999999999987665
No 21
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.6e-18 Score=142.25 Aligned_cols=108 Identities=20% Similarity=0.324 Sum_probs=83.0
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF 266 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f 266 (346)
.|+++|++++++|||++|... ..+.|.+|||+||.||++.+||+||++||||+++....+++.... .+...++|
T Consensus 2 ~~~~ii~~~~~~vLL~~r~~~--~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f 75 (121)
T cd04669 2 RASIVIINDQGEILLIRRIKP--GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYF 75 (121)
T ss_pred ceEEEEEeCCCEEEEEEEecC--CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEE
Confidence 367788888799999998743 358999999999999999999999999999999987777765443 12345677
Q ss_pred EEEEecCCccccC---------CccccceEEEEchhhhhcCCCCC
Q 019077 267 VCMLKPLSFEITI---------YEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 267 v~~l~~~~~~i~~---------~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
.|... ++.+.. ++.+..+++|++++++..+++.+
T Consensus 76 ~~~~~--~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 76 LARVI--SGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred EEEEE--CCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 77653 222211 13446679999999999998766
No 22
>PLN02325 nudix hydrolase
Probab=99.78 E-value=1.6e-18 Score=149.15 Aligned_cols=119 Identities=19% Similarity=0.322 Sum_probs=87.1
Q ss_pred CCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc--
Q 019077 180 GSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV-- 257 (346)
Q Consensus 180 ~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~-- 257 (346)
.+++++++|+++|+++ ++|||+||... .+.|.|.+|||++|.||++.+||+||++||||+++...++++.......
T Consensus 4 ~~~~p~~~v~~vi~~~-~~vLL~rr~~~-~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~ 81 (144)
T PLN02325 4 GEPIPRVAVVVFLLKG-NSVLLGRRRSS-IGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEE 81 (144)
T ss_pred CCCCCeEEEEEEEEcC-CEEEEEEecCC-CCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecC
Confidence 4567789999888875 79999998843 2568999999999999999999999999999999998888876433221
Q ss_pred --ccceeEEEEEEEEecCCc-cccCCccccceEEEEchhhhhcCCC
Q 019077 258 --AFEKSDLLFVCMLKPLSF-EITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 258 --~~~~~~~~fv~~l~~~~~-~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
......++|.+....... ....+.+|..+++|+++++++...+
T Consensus 82 ~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~ 127 (144)
T PLN02325 82 PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLF 127 (144)
T ss_pred CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhh
Confidence 122344555555432211 1223345678899999999987433
No 23
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=4.2e-18 Score=141.19 Aligned_cols=112 Identities=26% Similarity=0.421 Sum_probs=83.9
Q ss_pred ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee--ec--ccc-
Q 019077 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV--HL--VAF- 259 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~--~~--~~~- 259 (346)
+++|.++|+|+++++||++|.. .+.|.+|||++++||++.+||+||++||||+++...++++.... +. ...
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 77 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRSD----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNG 77 (129)
T ss_pred cceEEEEEECCCCeEEEEEecC----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCC
Confidence 4678888999889999999883 38999999999999999999999999999999887776543211 11 111
Q ss_pred ---ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077 260 ---EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 260 ---~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
....++|.+... +.....+..|..+++|++++++.+++++.
T Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~el~~~~~~~ 121 (129)
T cd04676 78 DVRQYLDITFRCRVV--GGELRVGDDESLDVAWFDPDGLPPLLMHP 121 (129)
T ss_pred CcEEEEEEEEEEEee--CCeecCCCCceeEEEEEChhhCccccCCH
Confidence 223345555443 33333456788999999999999988775
No 24
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.3e-18 Score=141.41 Aligned_cols=111 Identities=25% Similarity=0.354 Sum_probs=80.3
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCcee--eeEEEEEEeeecc-ccceeE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI--FLEMVAFRHVHLV-AFEKSD 263 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~--~~~ll~~~~~~~~-~~~~~~ 263 (346)
+|.++|++ +++|||++|.+.+..+|.|.+|||++++||++.+||+||++||||+.+. ...+++..+.... ......
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIG 80 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEE
Confidence 56677766 5899999998555568999999999999999999999999999999986 3444554333222 123445
Q ss_pred EEEEEEEecCCccc-cCCccccceEEEEchhhhhcCCC
Q 019077 264 LLFVCMLKPLSFEI-TIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 264 ~~fv~~l~~~~~~i-~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
++|.+... .+.. ..+++|+.+++|++++++.....
T Consensus 81 ~~f~~~~~--~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 81 LFFTVRRW--SGEPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEEEEEee--cCccccCCCCcEeeEEEEchHHCcchhc
Confidence 56666542 2222 23457889999999999976543
No 25
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.78 E-value=7.1e-18 Score=142.56 Aligned_cols=122 Identities=24% Similarity=0.333 Sum_probs=86.7
Q ss_pred EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEE
Q 019077 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFV 267 (346)
Q Consensus 188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv 267 (346)
..++|.++ ++|||++|.... ..+.|.+|||+++.||++.+||+||++||||+++...++++.............+.++
T Consensus 4 ~~~~i~~~-~~vLL~~r~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (137)
T cd03427 4 TLCFIKDP-DKVLLLNRKKGP-GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFV 81 (137)
T ss_pred EEEEEEEC-CEEEEEEecCCC-CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEE
Confidence 34555554 899999998543 6799999999999999999999999999999999888887765443332122233333
Q ss_pred EEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077 268 CMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI 315 (346)
Q Consensus 268 ~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l 315 (346)
+.......... ++.|..+++|++++++.++++.+.+ +.+++.++
T Consensus 82 f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~ 125 (137)
T cd03427 82 FLATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPGD---REWLPLML 125 (137)
T ss_pred EEECCcccccC-CCCccccceEEcHhhcccccCCCCc---HHHHHHHh
Confidence 33333333333 3556678999999999988776643 45555555
No 26
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.77 E-value=6e-18 Score=144.12 Aligned_cols=121 Identities=25% Similarity=0.452 Sum_probs=85.7
Q ss_pred eEEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEE------Eeeeccc
Q 019077 186 IGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF------RHVHLVA 258 (346)
Q Consensus 186 v~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~------~~~~~~~ 258 (346)
.+|+++|+|++ ++|||++|.+ .|.|.+|||++|+||++.+||.||++||||+++......++ .......
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 78 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHP 78 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCC
Confidence 46788899987 9999999873 47899999999999999999999999999998765554321 1111110
Q ss_pred ----cc--eeEEEEEEEEecCCcccc-CCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077 259 ----FE--KSDLLFVCMLKPLSFEIT-IYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI 315 (346)
Q Consensus 259 ----~~--~~~~~fv~~l~~~~~~i~-~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l 315 (346)
.. ...+.|+|... .+... .+++|+.+++|++++++..+++.+ ..+.+++.++
T Consensus 79 ~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~---~~~~~i~~~~ 137 (138)
T cd03674 79 KRGVPGHLHLDLRFLAVAP--ADDVAPPKSDESDAVRWFPLDELASLELPE---DVRRLVEKAL 137 (138)
T ss_pred CCCCCCcEEEEEEEEEEcc--CccccCCCCCcccccEEEcHHHhhhccCCH---HHHHHHHHHh
Confidence 11 13345666543 33333 257799999999999998776654 3456666554
No 27
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.77 E-value=5.5e-18 Score=145.25 Aligned_cols=119 Identities=21% Similarity=0.303 Sum_probs=87.3
Q ss_pred CCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc-c
Q 019077 181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA-F 259 (346)
Q Consensus 181 ~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~-~ 259 (346)
++....+|+++|+|.+++|||+++... ..++.|++|||++++||++++||+||++||||+++...+.++........ .
T Consensus 9 ~~~~~~av~~vv~~~~~~vLL~~r~~~-~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 87 (142)
T cd04700 9 VEVEARAAGAVILNERNDVLLVQEKGG-PKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGV 87 (142)
T ss_pred cceeeeeEEEEEEeCCCcEEEEEEcCC-CCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCc
Confidence 345568899999998889999987633 35799999999999999999999999999999999887777644322111 1
Q ss_pred ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077 260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 260 ~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
....++|++........+ ...+|+.+++|++++++.++...
T Consensus 88 ~~~~~~f~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~ 128 (142)
T cd04700 88 LVLRHVWLAEPEGQTLAP-KFTDEIAEASFFSREDVAQLYAQ 128 (142)
T ss_pred EEEEEEEEEEecCCcccc-CCCCCEEEEEEECHHHhhhcccc
Confidence 122345666553221122 23478999999999999887543
No 28
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3.8e-18 Score=143.05 Aligned_cols=114 Identities=26% Similarity=0.352 Sum_probs=84.0
Q ss_pred CccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeee-cc---
Q 019077 182 PSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVH-LV--- 257 (346)
Q Consensus 182 ~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~-~~--- 257 (346)
|.+.++|++++++.+++|||++|.. .+.|.+|||+|++||++.+||+||++||||+++.....++..... ..
T Consensus 4 ~~~~~~~~~~v~~~~~~vLL~~r~~----~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04677 4 PLILVGAGVILLNEQGEVLLQKRSD----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKP 79 (132)
T ss_pred cccccceEEEEEeCCCCEEEEEecC----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecC
Confidence 4456889999999889999999873 378999999999999999999999999999999887777543211 01
Q ss_pred cc----ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077 258 AF----EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 258 ~~----~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
.. ....+++++.. ....+..+.+|+.+++|++++++.++...
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 80 NGDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred CCCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchhH
Confidence 01 12223343432 23344556788999999999999876543
No 29
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=6.9e-18 Score=140.58 Aligned_cols=111 Identities=23% Similarity=0.428 Sum_probs=85.8
Q ss_pred ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc-----c
Q 019077 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA-----F 259 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~-----~ 259 (346)
+++|.++|+++ ++|||+++++ .+.|.+|||++++||++.+||+||++||||+.+....++++....... .
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~~----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~ 76 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREKS----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPY 76 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEcC----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCce
Confidence 47888999986 8999999973 589999999999999999999999999999999777777765432221 1
Q ss_pred ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCc
Q 019077 260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE 303 (346)
Q Consensus 260 ~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~ 303 (346)
....++|.|... ...+... +|+.+++|++++++.+++++..
T Consensus 77 ~~~~~~f~~~~~--~~~~~~~-~E~~~~~W~~~~el~~l~~~~~ 117 (123)
T cd04672 77 QVYKLFFLCEIL--GGEFKPN-IETSEVGFFALDDLPPLSEKRN 117 (123)
T ss_pred EEEEEEEEEEec--CCcccCC-CceeeeEEECHHHCcccccCCc
Confidence 233456666653 3344443 7899999999999999887653
No 30
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3.2e-18 Score=142.41 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=79.6
Q ss_pred EEEEEEeCCCeEEEEeecC--CCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077 188 VGGFVMNDKREVLVVKEKC--PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL 265 (346)
Q Consensus 188 V~avVin~~~~VLLvrr~~--~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~ 265 (346)
|+++++.++++|||++|.. ...++|.|.+|||+++.||++++||+||++||||+++....+...............++
T Consensus 3 v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T cd04682 3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHV 82 (122)
T ss_pred eEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEE
Confidence 3344444459999999984 34578999999999999999999999999999999986433322221221122334455
Q ss_pred EEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077 266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
|.+...... ....+.+|+.+++|++++++.+....
T Consensus 83 f~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~ 117 (122)
T cd04682 83 FVVPLTARE-DAILFGDEGQALRLMTVEEFLAHEDA 117 (122)
T ss_pred EEEEEecCC-CccccCchhheeecccHHHHhhcccc
Confidence 666553222 24466789999999999999876543
No 31
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.77 E-value=8.4e-18 Score=141.74 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=87.2
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc--eeEE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE--KSDL 264 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~--~~~~ 264 (346)
+|++++. .++++||++|.+. .++.|.+|||++++||++.+||.||++||||+++....+++.........+ ...+
T Consensus 2 ~v~~ii~-~~~~vLlv~r~~~--~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (134)
T cd03675 2 TVAAVVE-RDGRFLLVEEETD--GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRF 78 (134)
T ss_pred eEEEEEE-ECCEEEEEEEccC--CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEE
Confidence 4666655 4579999999854 568999999999999999999999999999999987777665433322112 2234
Q ss_pred EEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077 265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK 316 (346)
Q Consensus 265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~ 316 (346)
+|++.+... ......++|+.++.|++++++.++........+.+.+..++.
T Consensus 79 ~f~~~~~~~-~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~ 129 (134)
T cd03675 79 AFAAELLEH-LPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLA 129 (134)
T ss_pred EEEEEECCC-CCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHh
Confidence 555655321 111233568999999999999988632222245666666553
No 32
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.76 E-value=1.4e-17 Score=140.44 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=87.1
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF 266 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f 266 (346)
.+.++|++++++|||++|...+.+.|.|.||||++++||++.+|++||++||||+++....+++...+..........+|
T Consensus 5 ~~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (135)
T PRK10546 5 DVVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAW 84 (135)
T ss_pred EEEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEE
Confidence 34445556778999999986556789999999999999999999999999999999877666654332222222222333
Q ss_pred EEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHH
Q 019077 267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKA 317 (346)
Q Consensus 267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~ 317 (346)
.+.. ..+. +...|..+++|++++++.++++++.+ +++++.+++.
T Consensus 85 ~~~~--~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~ 128 (135)
T PRK10546 85 HVPD--FHGE--LQAHEHQALVWCTPEEALRYPLAPAD---IPLLEAFMAL 128 (135)
T ss_pred EEEE--ecCc--ccccccceeEEcCHHHcccCCCCcCc---HHHHHHHHHh
Confidence 3332 2222 22456788999999999999887754 5566665544
No 33
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.76 E-value=3.3e-18 Score=147.42 Aligned_cols=111 Identities=28% Similarity=0.352 Sum_probs=75.9
Q ss_pred eEEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077 186 IGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL 264 (346)
Q Consensus 186 v~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~ 264 (346)
+.++++|+|++ ++|||+|+.+ .+.|+||||++|+||++.+||+||++||||+++......... ......+....
T Consensus 2 p~~gaii~~~~~~~vLLvr~~~----~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~-~~~~~~~~~~~ 76 (145)
T cd03672 2 PVYGAIILNEDLDKVLLVKGWK----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDY-IELIIRGQNVK 76 (145)
T ss_pred CeeEEEEEeCCCCEEEEEEecC----CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceecccccee-eecccCCcEEE
Confidence 35788889865 7999999873 348999999999999999999999999999988653211111 11111122334
Q ss_pred EEEEEEecCCccccC-CccccceEEEEchhhhhcCCCC
Q 019077 265 LFVCMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 265 ~fv~~l~~~~~~i~~-~~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
+|++..........+ +++|+.+++|++++++.++...
T Consensus 77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 444432211122222 3578999999999999887544
No 34
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.2e-17 Score=139.81 Aligned_cols=109 Identities=24% Similarity=0.419 Sum_probs=81.7
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF 266 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f 266 (346)
.|+++++|.+++|||++|.+.+ .++.|.+|||++|.||++.+||+||++||||+++...+++...... .....++|
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~-~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~f 77 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRS-CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFVF 77 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCC-CCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEEE
Confidence 4678888888999999998443 5789999999999999999999999999999999888877654321 12344555
Q ss_pred EEEEecCCccccC---CccccceEEEEchhhhhcCCCCC
Q 019077 267 VCMLKPLSFEITI---YEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 267 v~~l~~~~~~i~~---~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
.|... ++.+.. ++.|+.+++|++++++ .+++.+
T Consensus 78 ~a~~~--~g~~~~~~~~~~e~~~~~W~~~~el-~~~~~~ 113 (123)
T cd04671 78 TGNIT--GGDLKTEKEADSESLQARWYSNKDL-PLPLRA 113 (123)
T ss_pred EEEEe--CCeEccCCCCCcceEEEEEECHHHC-CCccch
Confidence 55543 333322 3457889999999999 444443
No 35
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.2e-17 Score=139.87 Aligned_cols=114 Identities=22% Similarity=0.345 Sum_probs=81.5
Q ss_pred eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec--------c
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL--------V 257 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~--------~ 257 (346)
++|+++|++ +++|||+++.+. ..+.|.+|||++++||++++||+||++||||+++...+++.+..... .
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~--~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDD--GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPG 78 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcC--CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCC
Confidence 567788886 579999998743 35789999999999999999999999999999998766655433221 1
Q ss_pred ccceeEEEEEEEEecCCc-ccc-CCccccceEEEEchhhhhcCCCCC
Q 019077 258 AFEKSDLLFVCMLKPLSF-EIT-IYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 258 ~~~~~~~~fv~~l~~~~~-~i~-~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
......++|.|....... ... ..+.|..+++|++++++.++++.+
T Consensus 79 ~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 79 HFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred ceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 123345566666532111 111 123455789999999999988765
No 36
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.75 E-value=1.7e-17 Score=143.16 Aligned_cols=119 Identities=23% Similarity=0.384 Sum_probs=86.4
Q ss_pred CCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc-c
Q 019077 181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA-F 259 (346)
Q Consensus 181 ~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~-~ 259 (346)
+..+.++|++++...+ +|||++|...+ ..|.|.+|||+||.||++++||.||++||||+++...++++++...... .
T Consensus 6 ~~~p~~~v~~~i~~~~-~iLLvrR~~~p-~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r 83 (145)
T COG1051 6 YRTPLVAVGALIVRNG-RILLVRRANEP-GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPR 83 (145)
T ss_pred CCCcceeeeEEEEeCC-EEEEEEecCCC-CCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCc
Confidence 4556688888887654 99999999554 6789999999999999999999999999999999999999887666443 2
Q ss_pred ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077 260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 260 ~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
+.+..++++...........+.++...+.|+++++++.++.+
T Consensus 84 ~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~~ 125 (145)
T COG1051 84 GHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELPLP 125 (145)
T ss_pred eeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccccccc
Confidence 222222222222122222223347888999999999986443
No 37
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.75 E-value=1.4e-17 Score=140.83 Aligned_cols=106 Identities=24% Similarity=0.347 Sum_probs=81.8
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF 266 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f 266 (346)
+|.+++++++++|||++|++. ..|.|.+|||+++.||++.+||+||++||||+++.....++..... .. ....++|
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~--~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~-~~-~~~~~~f 77 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRF--PPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWP-FP-SSLMLGF 77 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCC--CCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCC-CC-ceEEEEE
Confidence 455667777799999999854 3689999999999999999999999999999999877777643221 11 2344556
Q ss_pred EEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077 267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l 298 (346)
++... ...+..+++|+.+++|++++++.++
T Consensus 78 ~~~~~--~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 78 TAEAD--SGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEc--CCcccCCchhhhccEeecHHHHhhc
Confidence 66553 3456667789999999999998874
No 38
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.75 E-value=3.7e-17 Score=135.87 Aligned_cols=121 Identities=17% Similarity=0.271 Sum_probs=84.5
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF 266 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f 266 (346)
.+.++|++++++|||+||...+.++|.|.||||++++||++.+||.||++||||+++.....++...+..........+|
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFW 85 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEE
Confidence 34456677778999999986566789999999999999999999999999999998766555544322222222222334
Q ss_pred EEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHH
Q 019077 267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDIC 314 (346)
Q Consensus 267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~ 314 (346)
.+... ... +...|..+++|++++++..++++... +++++.+
T Consensus 86 ~~~~~--~~~--~~~~e~~~~~W~~~~~l~~~~~p~~~---~~~~~~~ 126 (129)
T PRK10776 86 LVESW--EGE--PWGKEGQPGRWVSQVALNADEFPPAN---EPIIAKL 126 (129)
T ss_pred EEEEE--CCc--cCCccCCccEEecHHHCccCCCCccc---HHHHHHH
Confidence 44322 122 22457788899999999998887643 4555443
No 39
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.9e-17 Score=137.06 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=76.8
Q ss_pred EEEEEEeCCCeEEEEeecCCC-CCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077 188 VGGFVMNDKREVLVVKEKCPR-SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF 266 (346)
Q Consensus 188 V~avVin~~~~VLLvrr~~~~-~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f 266 (346)
|+++++++ ++|||+||.+.. ..+|.|.+|||++|+||++.+||+||++||||+++.....+........ ......+|
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~ 80 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY 80 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence 45566665 899999998433 4789999999999999999999999999999999755555544332221 22334455
Q ss_pred EEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077 267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP 299 (346)
Q Consensus 267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~ 299 (346)
.+.. ..+.+ ..+|+.+++|+++++++.++
T Consensus 81 ~~~~--~~~~~--~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 81 VVTF--WQGEI--PAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred EEEE--ecCCC--CcccccccEEcCHHHcchhh
Confidence 5543 23333 34789999999999998664
No 40
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.2e-17 Score=136.84 Aligned_cols=110 Identities=18% Similarity=0.315 Sum_probs=82.3
Q ss_pred eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec----cccce
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL----VAFEK 261 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~----~~~~~ 261 (346)
+.|.++|+++ ++|||+++.. .+.|.+|||++++||++.+||+||++||||+++.....++...... .....
T Consensus 2 ~~v~~vi~~~-~~vLl~~~~~----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04688 2 VRAAAIIIHN-GKLLVQKNPD----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHE 76 (126)
T ss_pred eEEEEEEEEC-CEEEEEEeCC----CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEE
Confidence 3566777765 4999998873 5799999999999999999999999999999998888776543211 11223
Q ss_pred eEEEEEEEEecCCcccc-------CCccccceEEEEchhhhhcCCCCC
Q 019077 262 SDLLFVCMLKPLSFEIT-------IYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 262 ~~~~fv~~l~~~~~~i~-------~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
..++|.|.+. .+... .++.|+.+++|++++++..+++.+
T Consensus 77 ~~~~f~~~~~--~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 77 IEFYYLVTLL--DESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred EEEEEEEEeC--CCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 4556666653 32322 245789999999999999887765
No 41
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.3e-17 Score=139.78 Aligned_cols=111 Identities=23% Similarity=0.391 Sum_probs=83.0
Q ss_pred EEEEEEEeCCCeEEEEeecC-CCCCCCceee-eeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077 187 GVGGFVMNDKREVLVVKEKC-PRSCSGMWKI-PTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL 264 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~-~~~~~g~W~l-PGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~ 264 (346)
++.++++|.+++|||++|.. ....+|.|.+ |||++++||++.+||+||++||||+++.....++..............
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK 81 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence 46788999999999998883 3346899999 699999999999999999999999998766655543332222222233
Q ss_pred EEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077 265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
+|.+.. ...+.++++|+.+++|++++++.++..
T Consensus 82 ~f~~~~---~~~~~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 82 VFSCVY---DGPLKLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred EEEEEE---CCCCCCCHhHhhheEEcCHHHHHHHhh
Confidence 454443 234556778999999999999987643
No 42
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.4e-17 Score=138.53 Aligned_cols=113 Identities=25% Similarity=0.391 Sum_probs=81.1
Q ss_pred eEEEEEEEeCCCeEEEEeecCCC-CCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc--ccee
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPR-SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA--FEKS 262 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~-~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~--~~~~ 262 (346)
++|+++|.+++++|||++|...+ ..+|.|.+|||++++||++.+||+||++||||+++....++.....+... ....
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI 81 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence 56778888877999999998443 35899999999999999999999999999999998877664333233222 1222
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077 263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
.++|.+.. ... ...+++|..+++|++++++..+.++
T Consensus 82 ~~~~~~~~--~~~-~~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 82 YLVFVCEA--LSG-AVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEEEeee--cCC-cccCChhheEEEEecHHHhhhhhcc
Confidence 23333332 222 2234568889999999998766554
No 43
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.74 E-value=1.5e-17 Score=144.97 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=84.7
Q ss_pred EEEEEEEeCC--CeEEEEeecCC-CCCCCceeeeeEEecCC-CCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee
Q 019077 187 GVGGFVMNDK--REVLVVKEKCP-RSCSGMWKIPTGYINKS-EDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS 262 (346)
Q Consensus 187 ~V~avVin~~--~~VLLvrr~~~-~~~~g~W~lPGG~ve~G-Es~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~ 262 (346)
+|.+++.+.+ ++|||+||... ..++|.|.+|||++|+| |++.+||+||++||||+++....+++.........+..
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 83 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV 83 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence 4556666644 79999999843 34789999999999999 99999999999999999998877776543332222334
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077 263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP 299 (346)
Q Consensus 263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~ 299 (346)
...|++.... ...+.++++|+.+++|++++++.+..
T Consensus 84 v~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~ 119 (157)
T cd03426 84 VTPVVGLVPP-PLPLVLNPDEVAEVFEVPLSFLLDPA 119 (157)
T ss_pred EEEEEEEECC-CCCCCCCHHHhheeEEEcHHHHhCcC
Confidence 4556665532 23556677899999999999998864
No 44
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.73 E-value=6.2e-17 Score=136.27 Aligned_cols=113 Identities=20% Similarity=0.281 Sum_probs=86.1
Q ss_pred CCCCCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec
Q 019077 177 MLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL 256 (346)
Q Consensus 177 ~lp~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~ 256 (346)
....++++.++|+++++++ ++|||++|.... ..|.|.+|||++|+||++++||.||++||||+++....++++....
T Consensus 5 ~~~~~~~~~~~v~~ii~~~-~~vLL~kr~~~~-~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~- 81 (130)
T cd04511 5 GYIHYQNPKIIVGCVPEWE-GKVLLCRRAIEP-RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP- 81 (130)
T ss_pred ccccCCCCcEEEEEEEecC-CEEEEEEecCCC-CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC-
Confidence 3345566677888777765 899999997443 6789999999999999999999999999999999877777655332
Q ss_pred cccceeEEEEEEEEecCCccccCCccccceEEEEchhhhh
Q 019077 257 VAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFV 296 (346)
Q Consensus 257 ~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~ 296 (346)
......++|.+.+. ...+. .+.|..+++|++++++.
T Consensus 82 -~~~~~~~~f~~~~~--~~~~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 82 -HISQVYMFYRARLL--DLDFA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred -CceEEEEEEEEEEc--CCccc-CCcchhceEEECHHHCC
Confidence 22345566777663 33333 35678899999999996
No 45
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=1.1e-16 Score=133.20 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=83.6
Q ss_pred eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL 265 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~ 265 (346)
..+.++|++++++|||++|...+.+.|.|+||||.+++||++.+|++||+.||||+++.....++...+..........+
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~ 84 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFW 84 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEE
Confidence 34555666777899999998766789999999999999999999999999999999987666655433333222223334
Q ss_pred EEEEEecCCccccCCccccceEEEEchhhhhcCCCCCcc
Q 019077 266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED 304 (346)
Q Consensus 266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~ 304 (346)
|.+... +... ...+..+++|++++++.+++++...
T Consensus 85 ~~~~~~--~~~~--~~~~~~~~~W~~~~~l~~~~~p~~~ 119 (128)
T TIGR00586 85 LLERWE--GGPP--GKEGQPEEWWVLVGLLADDFFPAAN 119 (128)
T ss_pred EEEEEc--CCCc--CcccccccEEeCHHHCCccCCCCCC
Confidence 444432 2221 2345677899999999999888754
No 46
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2.5e-17 Score=137.85 Aligned_cols=110 Identities=23% Similarity=0.277 Sum_probs=78.3
Q ss_pred EEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeEE--EEEEeeecccccee
Q 019077 187 GVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLEM--VAFRHVHLVAFEKS 262 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~l--l~~~~~~~~~~~~~ 262 (346)
.|.+++++++++|||++|. .+...+|.|.+| ||++++||++ +||+||++||||+++....+ +........ +..
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~--~~~ 78 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE--GFD 78 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC--CeE
Confidence 4677889988999999988 333467999998 8999999999 99999999999999764333 222211111 222
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077 263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
..+ ++........+.++.+|+.+++|++++++.++..
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 115 (127)
T cd04693 79 DYY-LFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIG 115 (127)
T ss_pred EEE-EEEecCcccccccCHHHhhhEEEeCHHHHHHHHh
Confidence 222 2222223345556678999999999999987643
No 47
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=5.1e-17 Score=136.96 Aligned_cols=114 Identities=21% Similarity=0.284 Sum_probs=77.7
Q ss_pred EEEEEE---eCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEE---EEeeeccccce
Q 019077 188 VGGFVM---NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA---FRHVHLVAFEK 261 (346)
Q Consensus 188 V~avVi---n~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~---~~~~~~~~~~~ 261 (346)
|++||+ +++++|||++|... .+|.|.+|||++++||++.+||+||++||||+++....... ...........
T Consensus 2 ~~~v~~~~~~~~~~vLl~~r~~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T cd04695 2 VSGVLLRSLDKETKVLLLKRVKT--LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRIL 79 (131)
T ss_pred ceEEEEEEcCCCCEEEEEEecCC--CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEE
Confidence 444554 35689999999854 57999999999999999999999999999999986543221 11111111112
Q ss_pred eEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccH
Q 019077 262 SDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDD 305 (346)
Q Consensus 262 ~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~ 305 (346)
...+|++... ....+.+ ++|+.+++|++++++.++...+.++
T Consensus 80 ~~~~f~~~~~-~~~~~~~-~~E~~~~~W~~~~e~~~~~~~~~~~ 121 (131)
T cd04695 80 MAPVFVGFVP-PHQEVVL-NHEHTEYRWCSFAEALELAPFPGQR 121 (131)
T ss_pred EEEEEEEEec-CCCcccc-CchhcccEecCHHHHHHhcCChhHH
Confidence 2334444442 1222333 4789999999999999987766543
No 48
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.72 E-value=5.6e-17 Score=135.95 Aligned_cols=112 Identities=24% Similarity=0.259 Sum_probs=83.5
Q ss_pred EEEEEEEeC--CCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee---eccc---
Q 019077 187 GVGGFVMND--KREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV---HLVA--- 258 (346)
Q Consensus 187 ~V~avVin~--~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~---~~~~--- 258 (346)
.|.+++++. +++|||++|... ++|.|.+|||+++.||++.+||+||++||||+.+....++..... ....
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~--~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK--YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNG 80 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC--CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCc
Confidence 466788887 899999999854 679999999999999999999999999999999876666554321 1111
Q ss_pred cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077 259 FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 259 ~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
.....++|++.+.. ......++|+.+++|++++++.++...+
T Consensus 81 ~~~~~~~f~~~~~~--~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 122 (129)
T cd04664 81 RVWTEHPFAFHLPS--DAVVTLDWEHDAFEWVPPEEAAALLLWE 122 (129)
T ss_pred eEEEEeEEEEEcCC--CCcccCCccccccEecCHHHHHHHHcCh
Confidence 12344566666532 2223346789999999999999886654
No 49
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.72 E-value=1.4e-16 Score=130.81 Aligned_cols=113 Identities=25% Similarity=0.375 Sum_probs=83.7
Q ss_pred EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEE
Q 019077 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFV 267 (346)
Q Consensus 188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv 267 (346)
+.+++.++++++||++|.+.+..+|.|.+|||+++.||++.++|.||++||||+++.....++...+..........+|.
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFL 83 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEE
Confidence 34555676699999999855567999999999999999999999999999999998776666544333322233334444
Q ss_pred EEEecCCccccCCccccceEEEEchhhhhcCCCCCcc
Q 019077 268 CMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED 304 (346)
Q Consensus 268 ~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~ 304 (346)
+... ...+ ...|..+++|++++++.+++++..+
T Consensus 84 ~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~~ 116 (124)
T cd03425 84 VELW--SGEP--QLLEHQELRWVPPEELDDLDFPPAD 116 (124)
T ss_pred Eeee--CCCc--ccccCceEEEeeHHHcccCCCCccc
Confidence 4332 2222 2457789999999999999988755
No 50
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.72 E-value=8.7e-17 Score=134.05 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=77.0
Q ss_pred eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc----cce
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA----FEK 261 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~----~~~ 261 (346)
+.|.++|++ +++|||+++. ..+.|.+|||++|+||++.+||+||++||||+++....+++........ ...
T Consensus 2 ~~~~~vi~~-~~~vLlv~~~----~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 76 (125)
T cd04689 2 LRARAIVRA-GNKVLLARVI----GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHE 76 (125)
T ss_pred eEEEEEEEe-CCEEEEEEec----CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEE
Confidence 467777775 6799999987 3478999999999999999999999999999999887777654332211 112
Q ss_pred eEEEEEEEEecCCcc-ccCCccccceEEEEchhhhhcC
Q 019077 262 SDLLFVCMLKPLSFE-ITIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 262 ~~~~fv~~l~~~~~~-i~~~~~Ei~~~~Wv~~eel~~l 298 (346)
..++|.+........ ....++|+.+++|++++++...
T Consensus 77 ~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 114 (125)
T cd04689 77 INHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLY 114 (125)
T ss_pred EEEEEEEEcccccccCCccCccceEEEEEccHHHcccC
Confidence 334555544321111 1223567899999999997644
No 51
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=9.2e-17 Score=132.20 Aligned_cols=107 Identities=20% Similarity=0.337 Sum_probs=78.9
Q ss_pred EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceee--eEEEEEEeeecccc---cee
Q 019077 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF--LEMVAFRHVHLVAF---EKS 262 (346)
Q Consensus 188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~--~~ll~~~~~~~~~~---~~~ 262 (346)
+.+++++.++++||++++ ..+.|.+|||++++||++++||+||++||||+++.. ...++......... ...
T Consensus 3 ~~~~v~~~~~~vLl~~r~----~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd04690 3 AAALILVRDGRVLLVRKR----GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVR 78 (118)
T ss_pred EEEEEEecCCeEEEEEEC----CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEE
Confidence 566777888899999987 357899999999999999999999999999999877 66665443322111 123
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077 263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
..+|.+... . .+. ...|+.+++|++++++...++.+
T Consensus 79 ~~~f~~~~~--~-~~~-~~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 79 ATVYVAELT--G-EPV-PAAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred EEEEEEccc--C-CcC-CCchhhccEEecHHHccccccCc
Confidence 345555442 2 332 35689999999999997766654
No 52
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.71 E-value=1e-16 Score=143.03 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=87.8
Q ss_pred eEEEEEEEeCCCeEEEEeecC-CCCCCCce-eeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077 186 IGVGGFVMNDKREVLVVKEKC-PRSCSGMW-KIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD 263 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~-~~~~~g~W-~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~ 263 (346)
.++.++|+|++++|||++|.. +...+|.| .+|||++++||++.+||+||++||||+.+.....++.............
T Consensus 38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 117 (180)
T PRK15393 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWG 117 (180)
T ss_pred EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEE
Confidence 556778888889999999873 33356776 5899999999999999999999999998765555543322222112222
Q ss_pred EEEEEEEecCCccccCCccccceEEEEchhhhhcC--CCCCccHHHHHHHHHHHHHhcC
Q 019077 264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ--PFYLEDDMSRKVIDICIKAYDD 320 (346)
Q Consensus 264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l--~~~~~~~~~~~ii~~~l~~~~~ 320 (346)
.+|.+.. .+...++++|+.+++|++++++.++ .+.+. . ...+..++....+
T Consensus 118 ~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~--~-~~~l~~~l~~~~~ 170 (180)
T PRK15393 118 ALFSCVS---HGPFALQEEEVSEVCWMTPEEITARCDEFTPD--S-LKALALWLTRNAK 170 (180)
T ss_pred EEEEEEe---CCCCCCChHHeeEEEECCHHHHhhhhhhcCcc--H-HHHHHHHHHhhcc
Confidence 3444433 3455667789999999999999987 34332 2 3445555544443
No 53
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.71 E-value=8.3e-17 Score=134.68 Aligned_cols=119 Identities=28% Similarity=0.416 Sum_probs=85.2
Q ss_pred eEEEEEEEeCC---CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEE-eeec---cc
Q 019077 186 IGVGGFVMNDK---REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR-HVHL---VA 258 (346)
Q Consensus 186 v~V~avVin~~---~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~-~~~~---~~ 258 (346)
.++++|+++.+ .+|||++++. +.|.+|||++++||++.+||+||++||||+++....+++.. .... ..
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~-----~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 77 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY-----GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRG 77 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC-----CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccC
Confidence 45777777744 3799999883 89999999999999999999999999999999876664211 1111 11
Q ss_pred cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHH
Q 019077 259 FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDIC 314 (346)
Q Consensus 259 ~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~ 314 (346)
......+|++.... ...+..+ +|+.+++|++++++.++.... -++.+++++
T Consensus 78 ~~~~~~~f~~~~~~-~~~~~~~-~E~~~~~W~~~~e~~~~~~~~---~~~~~~~~~ 128 (130)
T cd03428 78 KLKTVTYFLAELRP-DVEVKLS-EEHQDYRWLPYEEALKLLTYE---DLKAVLDKA 128 (130)
T ss_pred cceEEEEEEEEeCC-CCccccc-cceeeEEeecHHHHHHHcCch---hHHHHHHHh
Confidence 23455667776542 3344444 789999999999999886544 245565554
No 54
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.7e-16 Score=130.01 Aligned_cols=103 Identities=21% Similarity=0.320 Sum_probs=76.5
Q ss_pred EEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEE
Q 019077 190 GFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCM 269 (346)
Q Consensus 190 avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~ 269 (346)
++|...+++|||++|. .|.|.+|||++++||++.+||.||++||||+++.....+..... ......+|.+.
T Consensus 4 ~~i~~~~~~vLlv~r~-----~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~ 74 (112)
T cd04667 4 TVICRRGGRVLLVRKS-----GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVAS 74 (112)
T ss_pred EEEEecCCEEEEEEcC-----CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEE
Confidence 3444556899999986 28999999999999999999999999999999876665554321 12234556665
Q ss_pred EecCCccccCCccccceEEEEchhhhhcCCCCCc
Q 019077 270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE 303 (346)
Q Consensus 270 l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~ 303 (346)
+. .......++|+.+++|++++++.++..+..
T Consensus 75 ~~--~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 106 (112)
T cd04667 75 VP--PSAQPKPSNEIADCRWLSLDALGDLNASAA 106 (112)
T ss_pred cC--CcCCCCCchheeEEEEecHHHhhhcccchh
Confidence 43 222333467899999999999999877653
No 55
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.8e-16 Score=133.89 Aligned_cols=107 Identities=21% Similarity=0.386 Sum_probs=75.6
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCce-eeeEEEEEEee-e--cc----c
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT-IFLEMVAFRHV-H--LV----A 258 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v-~~~~ll~~~~~-~--~~----~ 258 (346)
+|+++|+++ ++|||+++.+ .+.|.||||+||+||++.+||+||++||||+.+ .....++.... . .. .
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~----~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~ 76 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR----YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADI 76 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC----CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCce
Confidence 467788874 7999999873 368999999999999999999999999999987 44555554321 1 11 1
Q ss_pred cceeEEEEEEEEecCCccccCCcccc---ceEEEEchhhhhcC
Q 019077 259 FEKSDLLFVCMLKPLSFEITIYEKEI---QAAKWMPLEEFVKQ 298 (346)
Q Consensus 259 ~~~~~~~fv~~l~~~~~~i~~~~~Ei---~~~~Wv~~eel~~l 298 (346)
+....++|+|.+.........+..|. .+++|++++++.+-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 77 FHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred eEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 22345678887653333333433333 36899999998764
No 56
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.6e-16 Score=136.21 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=81.3
Q ss_pred eEEEEEEEeCC---CeEEEEeecC-CCCCCCceee-eeEEecCCCCHHHHHHHHHHHHhCCceee--eEEEEEEeeecc-
Q 019077 186 IGVGGFVMNDK---REVLVVKEKC-PRSCSGMWKI-PTGYINKSEDLFSGAVREVKEETGVDTIF--LEMVAFRHVHLV- 257 (346)
Q Consensus 186 v~V~avVin~~---~~VLLvrr~~-~~~~~g~W~l-PGG~ve~GEs~~eAA~REv~EETGl~v~~--~~ll~~~~~~~~- 257 (346)
.+|.++|+|.+ ++||+++|.. ....+|.|.+ |||++++||++.+||+||++||||+.+.. ...++.......
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 82 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH 82 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccc
Confidence 35778889876 8999999983 3457899999 59999999999999999999999998753 333443322211
Q ss_pred --c--cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077 258 --A--FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 258 --~--~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l 298 (346)
. ......+|++........+.++++|+.+++|++++++.++
T Consensus 83 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 127 (144)
T cd04692 83 IGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAEL 127 (144)
T ss_pred cCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHH
Confidence 0 1123456666553222345566789999999999999765
No 57
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.69 E-value=5.3e-16 Score=138.84 Aligned_cols=115 Identities=18% Similarity=0.107 Sum_probs=86.9
Q ss_pred eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL 265 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~ 265 (346)
.+|.++.++++++|||+++.+.+.....|+||||.+|+||++++||+||++||||+++.....++.....+.......++
T Consensus 48 ~~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~ 127 (185)
T PRK11762 48 GAVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNI 127 (185)
T ss_pred CEEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEE
Confidence 34666667778899999998777788899999999999999999999999999999999988887665544444444445
Q ss_pred EEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077 266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
|++.... ......++.|..++.|++++++.++...
T Consensus 128 f~a~~~~-~~~~~~~e~E~i~~~~~~~~e~~~~~~~ 162 (185)
T PRK11762 128 VLAEDLY-PERLEGDEPEPLEVVRWPLADLDELLAR 162 (185)
T ss_pred EEEEccc-cccCCCCCCceeEEEEEcHHHHHHHHHc
Confidence 5554321 1122335667778999999999876443
No 58
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=3.1e-16 Score=134.94 Aligned_cols=113 Identities=17% Similarity=0.288 Sum_probs=80.3
Q ss_pred eEEEEEEEeCCCeEEEEeecC-CCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee----EEEEEEeeecc---
Q 019077 186 IGVGGFVMNDKREVLVVKEKC-PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL----EMVAFRHVHLV--- 257 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~-~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~----~ll~~~~~~~~--- 257 (346)
++|.++|+|.+++|||++|.. ...++|.|.+|||++++||++.+||+||++||||+.+... ++++.......
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~ 81 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence 467888899999999999983 3357899999999999999999999999999999988753 45543321111
Q ss_pred ---c--cceeEEEEEEEEecC----CccccCCccccceEEEEchhhhhcC
Q 019077 258 ---A--FEKSDLLFVCMLKPL----SFEITIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 258 ---~--~~~~~~~fv~~l~~~----~~~i~~~~~Ei~~~~Wv~~eel~~l 298 (346)
. ......++++..... ...+.++++|+.+++|++++++.++
T Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 1 122333333322211 1134456689999999999998764
No 59
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.68 E-value=4e-16 Score=130.55 Aligned_cols=108 Identities=22% Similarity=0.181 Sum_probs=78.0
Q ss_pred EEEEEEeCC---CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee-EEEEEEeeeccc----c
Q 019077 188 VGGFVMNDK---REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL-EMVAFRHVHLVA----F 259 (346)
Q Consensus 188 V~avVin~~---~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~-~ll~~~~~~~~~----~ 259 (346)
+++|+++.+ ++|||+++.+ .+.|.+|||+||.||++.+||+||++||||+++... ..++........ .
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~----~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~ 78 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRR----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPP 78 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecC----CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCc
Confidence 566666643 7899999873 289999999999999999999999999999998777 777655433222 1
Q ss_pred ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077 260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 260 ~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
.....+|.+.... ......+.|+.+++|++++++.++...
T Consensus 79 ~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 79 RCEVAVFPLEVTE--ELDEWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred eEEEEEEEEEEec--cccCCcccCceEEEEecHHHHHHhcCC
Confidence 2344555555432 222223456789999999999877544
No 60
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.67 E-value=3.6e-16 Score=137.31 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=83.0
Q ss_pred ceEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeEEE-EEE-eeecccc-
Q 019077 185 QIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLEMV-AFR-HVHLVAF- 259 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~ll-~~~-~~~~~~~- 259 (346)
..+|+++|+|++++|||++|. .....+|.|.+| ||++++||++++||+||++||||+.+....++ ... +......
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 109 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG 109 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence 466778889999999999998 334578999997 89999999999999999999999998776664 221 1111111
Q ss_pred ---ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077 260 ---EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 260 ---~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
.....+|.+... ....++.+|+.+++|++++++.++...
T Consensus 110 ~~~~~i~~~f~~~~~---~~~~~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 110 LVEHEIDHVFFARAD---VTLIPNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred ceeeEEEEEEEEEeC---CCCCCCccceeEEEEECHHHHHHHHHh
Confidence 112334444432 234456789999999999999886543
No 61
>PLN03143 nudix hydrolase; Provisional
Probab=99.65 E-value=1.5e-15 Score=144.24 Aligned_cols=222 Identities=17% Similarity=0.170 Sum_probs=124.8
Q ss_pred cccceeeccccccCccccccCCccceeeccccccCCCCCCC-CccccccCCccCCCCcEEeCCCCCCCChHHHHHHHHHH
Q 019077 45 KGSSTSTSAKLKSSLMPSLFGGGSVIKKKEINVLSPDITAP-IFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRAS 123 (346)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~g~~v~~~~~~~~~~~f~~~l~~s 123 (346)
+..+.++|++.++++++++ ++++. ++++.+... +..+.++|.+.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 64 (291)
T PLN03143 16 MAHKEASSSSSSSPLTHSI-----------------TLPGQPGQPVLVVAA--------------PGISSSDFRKAIDSS 64 (291)
T ss_pred cceehhccCCCCCCceeEE-----------------EccCCCCCceeEecC--------------CCCCHHHHHhHhcCh
Confidence 5556677788888999999 88877 666655544 334667887776665
Q ss_pred h-HHhHhcCceeEEEEccccccCchHHHHhcccceecCCCceeEeeccccC--CCCCCCCCCc-cceEEEEEEE-eCCCe
Q 019077 124 L-SNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPV--EPCMLPGSPS-HQIGVGGFVM-NDKRE 198 (346)
Q Consensus 124 l-~~w~~~~~r~vw~~l~~~~~~l~~~a~~~gf~~H~~~~~~~~l~~wl~~--~~~~lp~~~~-~~v~V~avVi-n~~~~ 198 (346)
+ ++|...=....-+. ....-.+-...+ ++..|....-+|+.+..-.-+ ....++..-. +..+|+++++ +.+++
T Consensus 65 ~~~~w~~~~~~~~~~~-~~~~~~~~~~~~-~~vd~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge 142 (291)
T PLN03143 65 LFRQWLKNLQSESGIL-AYGSMSLKQVLI-QGVDMFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGE 142 (291)
T ss_pred HHHHHHHHhhhccccc-cCCCceeEEEEE-EEEecccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCC
Confidence 5 77754321110000 001111111112 222222334445444322111 1122332222 1235555554 44444
Q ss_pred --EEEEeecCCCCCCCceeeeeEEecCC-CCHHHHHHHHHHHHhCCceeeeEEEEE-----------EeeeccccceeEE
Q 019077 199 --VLVVKEKCPRSCSGMWKIPTGYINKS-EDLFSGAVREVKEETGVDTIFLEMVAF-----------RHVHLVAFEKSDL 264 (346)
Q Consensus 199 --VLLvrr~~~~~~~g~W~lPGG~ve~G-Es~~eAA~REv~EETGl~v~~~~ll~~-----------~~~~~~~~~~~~~ 264 (346)
|+|+++.+.+.+...|++|||.+|++ |++.+||+||++||||+.+...++... .+..+........
T Consensus 143 ~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~ 222 (291)
T PLN03143 143 TYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEIS 222 (291)
T ss_pred EEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEE
Confidence 99999998777788999999999984 899999999999999998653333221 1122222222334
Q ss_pred EEEEEEecCCc---------cccCCccccceEEEEchhhhhcCC
Q 019077 265 LFVCMLKPLSF---------EITIYEKEIQAAKWMPLEEFVKQP 299 (346)
Q Consensus 265 ~fv~~l~~~~~---------~i~~~~~Ei~~~~Wv~~eel~~l~ 299 (346)
+|++....... .-..++.|..++.|++++++..+.
T Consensus 223 Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~ 266 (291)
T PLN03143 223 LFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMT 266 (291)
T ss_pred EEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence 45543321111 011245677889999999988875
No 62
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.64 E-value=1e-15 Score=133.64 Aligned_cols=113 Identities=16% Similarity=0.239 Sum_probs=80.6
Q ss_pred ceEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeE--EEEEEee-ecccc
Q 019077 185 QIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLE--MVAFRHV-HLVAF 259 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~--ll~~~~~-~~~~~ 259 (346)
..+|+++|+|.+++|||+||. .+...+|.|.+| ||+++.|| .+||+||++|||||++...+ .+..... .....
T Consensus 27 h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~ 104 (158)
T TIGR02150 27 HRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAW 104 (158)
T ss_pred EEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCC
Confidence 356778899999999999988 444578999998 79999999 49999999999999987654 2221111 11111
Q ss_pred c--eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077 260 E--KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 260 ~--~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
+ ....+|.+.. . ..+.++++|+.+++|++++++.++...+
T Consensus 105 g~~~~~~~f~~~~--~-~~~~~~~~Ev~~~~W~~~~el~~~~~~~ 146 (158)
T TIGR02150 105 GEHELCPVFFARA--P-VPLNPNPEEVAEYRWVSLEELKEILKAP 146 (158)
T ss_pred CcEEEEEEEEEec--C-CcccCChhHeeeEEEeCHHHHHHHHhcC
Confidence 2 2334444443 2 2456667799999999999998875443
No 63
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.64 E-value=1.2e-15 Score=136.43 Aligned_cols=113 Identities=15% Similarity=0.280 Sum_probs=81.4
Q ss_pred ceEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeE-EEEEEee-eccccc
Q 019077 185 QIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLE-MVAFRHV-HLVAFE 260 (346)
Q Consensus 185 ~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~-ll~~~~~-~~~~~~ 260 (346)
..+|+++|+|++++|||+||. .....+|.|.+| ||++++||++++||+||++||||+++.... +++.... .....+
T Consensus 34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 113 (184)
T PRK03759 34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNG 113 (184)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCC
Confidence 356778899989999999987 333467889987 899999999999999999999999986433 2322211 111111
Q ss_pred ----eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077 261 ----KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 261 ----~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
....+|++... +.+.++++|+.+++|++++++.++..
T Consensus 114 ~~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~ 154 (184)
T PRK03759 114 IVENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVD 154 (184)
T ss_pred ceeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHH
Confidence 22345555442 35566778999999999999987644
No 64
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.64 E-value=4e-15 Score=120.93 Aligned_cols=112 Identities=27% Similarity=0.470 Sum_probs=81.6
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc--ccceeEE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--AFEKSDL 264 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~--~~~~~~~ 264 (346)
++++++++.++++||++|... ..|.|.+|||+++.||++.++|+||+.||+|+.+.............. .......
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~--~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS--PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVF 79 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC--CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEE
Confidence 567788888799999999854 579999999999999999999999999999998865444443322221 1223444
Q ss_pred EEEEEEecCCccc-cCCccccceEEEEchhhhhcCCCCC
Q 019077 265 LFVCMLKPLSFEI-TIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 265 ~fv~~l~~~~~~i-~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
+|.+... .... ..++.|..+.+|++++++.+++...
T Consensus 80 ~~~~~~~--~~~~~~~~~~e~~~~~w~~~~~l~~~~~~~ 116 (123)
T cd02883 80 VFLARLV--GGEPTLLPPDEISEVRWVTLDELPALALSP 116 (123)
T ss_pred EEEEEeC--CCCcCCCCCCccceEEEEcHHHCccccccc
Confidence 5555543 2222 2456788899999999998865544
No 65
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=2.3e-15 Score=127.88 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=80.9
Q ss_pred EEEEEEEeCCCeEEEEeecCC-CCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCce-eeeEEEEEEe----eeccccc
Q 019077 187 GVGGFVMNDKREVLVVKEKCP-RSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT-IFLEMVAFRH----VHLVAFE 260 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~-~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v-~~~~ll~~~~----~~~~~~~ 260 (346)
++.++++|.+++|||+++... ....+.|.+|||+++.||++.+||.||++||||+++ ....++.... .......
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~ 81 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR 81 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence 578899999999999998743 235789999999999999999999999999999998 5444442221 1112223
Q ss_pred eeEEEEEEEEecCCcc-cc--CC-ccccceEEEEchhhhhcC--CCCC
Q 019077 261 KSDLLFVCMLKPLSFE-IT--IY-EKEIQAAKWMPLEEFVKQ--PFYL 302 (346)
Q Consensus 261 ~~~~~fv~~l~~~~~~-i~--~~-~~Ei~~~~Wv~~eel~~l--~~~~ 302 (346)
...++|++........ .. .. ..++.+++|++++++.+. .+.+
T Consensus 82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~~~~~~P 129 (133)
T cd04685 82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAATPETVYP 129 (133)
T ss_pred eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhCCCccCC
Confidence 4566777766421111 11 11 234668999999999887 4443
No 66
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.63 E-value=4.6e-15 Score=144.82 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=80.6
Q ss_pred CCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEe-----ee
Q 019077 181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH-----VH 255 (346)
Q Consensus 181 ~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~-----~~ 255 (346)
++...++|+++|++ +++|||++|...+ +.|.|.+|||++|+||++++||+||++||||+++....+.+... ..
T Consensus 199 ~~~~~vtv~avv~~-~g~VLLvrR~~~p-~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~ 276 (340)
T PRK05379 199 YPPTFVTVDAVVVQ-SGHVLLVRRRAEP-GKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH 276 (340)
T ss_pred CCCcceEEEEEEEE-CCEEEEEEecCCC-CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence 33445788888775 5799999998532 57999999999999999999999999999999876554432211 01
Q ss_pred cc--c-cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077 256 LV--A-FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 256 ~~--~-~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l 298 (346)
+. . .....++|.+.+..........++|..+++|++++++..+
T Consensus 277 p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 277 PGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence 11 1 1234556666654211111123568899999999999875
No 67
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.60 E-value=9.4e-15 Score=130.97 Aligned_cols=116 Identities=13% Similarity=0.013 Sum_probs=85.3
Q ss_pred ceEEEEEEEeC-CCeEEEEeecCCCC-----CCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc
Q 019077 185 QIGVGGFVMND-KREVLVVKEKCPRS-----CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA 258 (346)
Q Consensus 185 ~v~V~avVin~-~~~VLLvrr~~~~~-----~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~ 258 (346)
..+|++++++. +++|||+++.+.+. .+..|++|||++|+||++++||+||++||||+.+.....++.....+..
T Consensus 44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~ 123 (185)
T TIGR00052 44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGG 123 (185)
T ss_pred CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCC
Confidence 34677777875 48999999987654 5679999999999999999999999999999999887777655444443
Q ss_pred cceeEEEEEEEEecCC--ccccCCccccceEEEEchhhhhcCCC
Q 019077 259 FEKSDLLFVCMLKPLS--FEITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 259 ~~~~~~~fv~~l~~~~--~~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
......+|++...... .....+++|...+.|++++++.++..
T Consensus 124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~ 167 (185)
T TIGR00052 124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIK 167 (185)
T ss_pred CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHH
Confidence 4445566777653211 11122345667789999999987644
No 68
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.59 E-value=5e-15 Score=125.39 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=69.9
Q ss_pred CCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEE-----Eeee-c------ccccee
Q 019077 195 DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF-----RHVH-L------VAFEKS 262 (346)
Q Consensus 195 ~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~-----~~~~-~------~~~~~~ 262 (346)
+++++||+++... ..|.|.||||+||+||++.+||+||++||||+.+.. .+++. .... + ...+..
T Consensus 11 ~~~~~Llvk~~~~--~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (132)
T cd04661 11 DDTLVLLVQQKVG--SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAK 87 (132)
T ss_pred cCcEEEEEEeecC--CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccE
Confidence 4578999998732 358999999999999999999999999999998764 23221 1110 0 011233
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077 263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP 299 (346)
Q Consensus 263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~ 299 (346)
..+|.|.. .++++.+ ..|+.+++|++++++.++.
T Consensus 88 ~~~f~~~~--~~g~~~~-~~e~~~~~W~~~~el~~~l 121 (132)
T cd04661 88 VFFFKARY--MSGQFEL-SQNQVDFKWLAKEELQKYL 121 (132)
T ss_pred EEEEEEEE--ecCcccc-CCCcceeEecCHHHHHhhc
Confidence 45555654 3455443 4789999999999998753
No 69
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.59 E-value=2e-14 Score=129.34 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=82.1
Q ss_pred eEEEEEEEe--CCCeEEEEeec-CCCCCCCceeeeeEEecCC-CCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccce
Q 019077 186 IGVGGFVMN--DKREVLVVKEK-CPRSCSGMWKIPTGYINKS-EDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEK 261 (346)
Q Consensus 186 v~V~avVin--~~~~VLLvrr~-~~~~~~g~W~lPGG~ve~G-Es~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~ 261 (346)
.++.++.+. +++.||++||. ......|.|+||||.+|+| |++.+||+||++||||++...+..++.........+.
T Consensus 31 ~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~ 110 (190)
T PRK10707 31 QAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGY 110 (190)
T ss_pred CeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCc
Confidence 344444442 44689999977 3334679999999999985 6899999999999999999988888765533233344
Q ss_pred eEEEEEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077 262 SDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP 299 (346)
Q Consensus 262 ~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~ 299 (346)
....+++.+. ......++++|+.++.|+|++++.++.
T Consensus 111 ~~~~~v~~~~-~~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 111 QVTPVVGIIP-PDLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEEEEEEC-CCCCCCCChhhhheEEEEeHHHHhCcc
Confidence 4445555443 223455677899999999999998864
No 70
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.58 E-value=3.5e-14 Score=128.93 Aligned_cols=115 Identities=14% Similarity=0.026 Sum_probs=85.9
Q ss_pred eEEEEEEEeC-CCeEEEEeecCCCCC-----CCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccc
Q 019077 186 IGVGGFVMND-KREVLVVKEKCPRSC-----SGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAF 259 (346)
Q Consensus 186 v~V~avVin~-~~~VLLvrr~~~~~~-----~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~ 259 (346)
-+|+++++++ +++|||+++.+++.. +-.|++|+|.+|+||++.+||+||+.||||+.+.....+..+...+...
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~ 129 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGT 129 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcC
Confidence 4566777776 479999999977653 3689999999999999999999999999999998877776555544444
Q ss_pred ceeEEEEEEEEecC---CccccCCccccceEEEEchhhhhcCCC
Q 019077 260 EKSDLLFVCMLKPL---SFEITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 260 ~~~~~~fv~~l~~~---~~~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
....++|++..... ......+++|..++.|++++++.++..
T Consensus 130 ~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~ 173 (202)
T PRK10729 130 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVE 173 (202)
T ss_pred ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHH
Confidence 45566666654211 111234567778899999999987643
No 71
>PRK08999 hypothetical protein; Provisional
Probab=99.58 E-value=3.1e-14 Score=137.05 Aligned_cols=114 Identities=17% Similarity=0.232 Sum_probs=82.1
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF 266 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f 266 (346)
.+.++|++.+++|||++|...+.+.|.|.||||++++||++.+|+.||++||||+.+.....+....+..........+|
T Consensus 7 ~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y 86 (312)
T PRK08999 7 VAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVR 86 (312)
T ss_pred EEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEE
Confidence 34455667778999999986666889999999999999999999999999999999876555543332222222222333
Q ss_pred EEEEecCCccccCCccccceEEEEchhhhhcCCCCCcc
Q 019077 267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED 304 (346)
Q Consensus 267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~ 304 (346)
.+... ... ++..|..+++|++++++.+++++...
T Consensus 87 ~~~~~--~~~--~~~~e~~~~~Wv~~~el~~~~~~~~~ 120 (312)
T PRK08999 87 RVTAW--QGE--PHGREGQPLAWVAPDELAVYPFPPAN 120 (312)
T ss_pred EEEEe--cCc--ccCccCCccEEecHHHcccCCCCcch
Confidence 33321 222 33557788999999999999888754
No 72
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.57 E-value=7.1e-16 Score=144.66 Aligned_cols=115 Identities=22% Similarity=0.299 Sum_probs=86.6
Q ss_pred CCCCCccceEEEEEEEeCCC-eEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec
Q 019077 178 LPGSPSHQIGVGGFVMNDKR-EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL 256 (346)
Q Consensus 178 lp~~~~~~v~V~avVin~~~-~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~ 256 (346)
...||+..+.|..+|++.++ +.||.|++++ .+|+|..++|++|+|||++|||+||++||||++++.+.+... .+
T Consensus 180 n~~yPr~dPvVIm~li~~d~~~~LL~R~~r~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~as---QP 254 (345)
T KOG3084|consen 180 NVIYPRTDPVVIMLLIDHDGKHALLGRQKRY--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVAS---QP 254 (345)
T ss_pred CeeccCCCCeEEEEEEcCCCCEeeeecccCC--CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeec---CC
Confidence 45678888889999999775 5556665555 568999999999999999999999999999999998887663 44
Q ss_pred cc-cceeEEEEEEEEecCCccccCCcc-ccceEEEEchhhhhc
Q 019077 257 VA-FEKSDLLFVCMLKPLSFEITIYEK-EIQAAKWMPLEEFVK 297 (346)
Q Consensus 257 ~~-~~~~~~~fv~~l~~~~~~i~~~~~-Ei~~~~Wv~~eel~~ 297 (346)
++ ++.+.+...+.+...++.|..+.+ |.++++|++.+|+.+
T Consensus 255 WP~~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~ 297 (345)
T KOG3084|consen 255 WPLMPQSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS 297 (345)
T ss_pred CCCCchHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence 44 332222221222223477888877 999999999998754
No 73
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.52 E-value=2e-13 Score=123.02 Aligned_cols=114 Identities=12% Similarity=0.048 Sum_probs=86.1
Q ss_pred eEEEEEEEeC-CCeEEEEeecCCCC------CCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc
Q 019077 186 IGVGGFVMND-KREVLVVKEKCPRS------CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA 258 (346)
Q Consensus 186 v~V~avVin~-~~~VLLvrr~~~~~------~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~ 258 (346)
.+|++++++. +++|||+++.+++. .+-.|++|+|.+|+| ++++||+||++||||+.+..+..++.....+..
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~ 124 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG 124 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCcc
Confidence 4566777775 67999999998876 677899999999976 699999999999999999888877665555554
Q ss_pred cceeEEEEEEEEecC--CccccCCccccceEEEEchhhhhcCCC
Q 019077 259 FEKSDLLFVCMLKPL--SFEITIYEKEIQAAKWMPLEEFVKQPF 300 (346)
Q Consensus 259 ~~~~~~~fv~~l~~~--~~~i~~~~~Ei~~~~Wv~~eel~~l~~ 300 (346)
.....++|++..... ......+++|..++.|+|++++.++..
T Consensus 125 s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~ 168 (191)
T PRK15009 125 VTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIK 168 (191)
T ss_pred cCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHH
Confidence 455556666664211 111223467888999999999988753
No 74
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.52 E-value=7.1e-14 Score=124.33 Aligned_cols=108 Identities=15% Similarity=0.281 Sum_probs=76.3
Q ss_pred EEEEeCC--CeEEEEeec-CCCCCCCce-eeeeEEecCCCCHHHHHHHHHHHHhCCceeeeE---EEEEEe-ee--ccc-
Q 019077 190 GFVMNDK--REVLVVKEK-CPRSCSGMW-KIPTGYINKSEDLFSGAVREVKEETGVDTIFLE---MVAFRH-VH--LVA- 258 (346)
Q Consensus 190 avVin~~--~~VLLvrr~-~~~~~~g~W-~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~---ll~~~~-~~--~~~- 258 (346)
+++.|.+ ++||+.||. .+..++|.| .+|+|++++||++.+||+||++||||+++...+ .++... .. ...
T Consensus 39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~ 118 (180)
T cd03676 39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG 118 (180)
T ss_pred EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCc
Confidence 4566765 899999999 666789999 599999999999999999999999999987533 232111 11 111
Q ss_pred -cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077 259 -FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 259 -~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l 298 (346)
.....++|.+.+. .+..+.++++|+.++.|++++|+.++
T Consensus 119 ~~~e~~~~f~~~~~-~~~~~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 119 LQPEVEYVYDLELP-PDFIPAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred EeeeEEEEEEEEcC-CCCeeCCCCCcEeEEEEECHHHHHHH
Confidence 1122333444332 22345567889999999999999765
No 75
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=4e-13 Score=111.93 Aligned_cols=57 Identities=28% Similarity=0.360 Sum_probs=44.5
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceee
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~ 245 (346)
.+++++...+ .+||++|... ...|.|.||||++|+||++.+||.||++||||+++..
T Consensus 6 ~av~vl~~~~-~~lL~~r~~~-~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 6 VVVALLPVDD-GLLVIRRGIE-PGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred EEEEEEEECC-CEEEEEeecC-CCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 3334444444 4777776643 2579999999999999999999999999999998864
No 76
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.50 E-value=2.6e-13 Score=113.09 Aligned_cols=100 Identities=24% Similarity=0.279 Sum_probs=73.7
Q ss_pred EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEE
Q 019077 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFV 267 (346)
Q Consensus 188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv 267 (346)
|.+++++ ++++||+++. .+.|.+|||++++||++.+||.||++||||+.+.....++..............+|.
T Consensus 3 v~vi~~~-~~~vLl~~~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y~ 76 (118)
T cd04665 3 VLVICFY-DDGLLLVRHK-----DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVYP 76 (118)
T ss_pred EEEEEEE-CCEEEEEEeC-----CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEEE
Confidence 4445554 4799999886 357999999999999999999999999999999888888765544432233445565
Q ss_pred EEEecCCccccCCccccceEEEEchhhh
Q 019077 268 CMLKPLSFEITIYEKEIQAAKWMPLEEF 295 (346)
Q Consensus 268 ~~l~~~~~~i~~~~~Ei~~~~Wv~~eel 295 (346)
+... .........|+....|++.+..
T Consensus 77 a~~~--~~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 77 AVSA--QLEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEE--ecccccccccccCcEEeccCCc
Confidence 5553 2222234689999999997654
No 77
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.50 E-value=3e-13 Score=113.63 Aligned_cols=104 Identities=23% Similarity=0.278 Sum_probs=66.1
Q ss_pred EEEEEEEe---CCCeEEEEeecCC---CCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc
Q 019077 187 GVGGFVMN---DKREVLVVKEKCP---RSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE 260 (346)
Q Consensus 187 ~V~avVin---~~~~VLLvrr~~~---~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~ 260 (346)
++++|+++ +..+|||+++... ....+.|++|||+++.||++.+||+||++||||+++. ..++..... ....+
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~-~~~~~ 79 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSL-KQSGG 79 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEE-ECCCC
Confidence 35666665 2357999987421 1356899999999999999999999999999999876 223222111 11112
Q ss_pred eeEEEEEEE--------------EecCCccccCC-ccccceEEEEch
Q 019077 261 KSDLLFVCM--------------LKPLSFEITIY-EKEIQAAKWMPL 292 (346)
Q Consensus 261 ~~~~~fv~~--------------l~~~~~~i~~~-~~Ei~~~~Wv~~ 292 (346)
....+|++. +...+++.... .+|..+++|+++
T Consensus 80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 223333332 22223344443 478899999984
No 78
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.49 E-value=9.4e-13 Score=114.70 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=85.6
Q ss_pred cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD 263 (346)
Q Consensus 184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~ 263 (346)
+...|.++++.+ +++||+++.+ ..|.+|||++|+||++.+||.||++||||+.+.....++.+...........
T Consensus 23 ~~~~V~ii~~~~-~~~LL~~~~~-----~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~ 96 (156)
T TIGR02705 23 NPNHVLVIPRYK-DQWLLTEHKR-----RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVK 96 (156)
T ss_pred CCCEEEEEEEEC-CEEEEEEEcC-----CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEE
Confidence 334565555654 5899998863 3599999999999999999999999999999998888887655544333455
Q ss_pred EEEEEEEecCCccccCCccccceEE-EEchhhhhcCCCCCcc---HHHHHHHHHHHHHhc
Q 019077 264 LLFVCMLKPLSFEITIYEKEIQAAK-WMPLEEFVKQPFYLED---DMSRKVIDICIKAYD 319 (346)
Q Consensus 264 ~~fv~~l~~~~~~i~~~~~Ei~~~~-Wv~~eel~~l~~~~~~---~~~~~ii~~~l~~~~ 319 (346)
.+|++.... .. . .+|..+.. +++++++.+....... .+-...+..+++.++
T Consensus 97 ~vf~A~~~~--~~--~-~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~~ 151 (156)
T TIGR02705 97 DVYFAEVSA--LE--S-KDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERAK 151 (156)
T ss_pred EEEEEEEec--cc--c-CCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHHH
Confidence 566666542 12 2 24444444 7999998776543321 134455666666654
No 79
>PLN02709 nudix hydrolase
Probab=99.48 E-value=5.1e-13 Score=122.28 Aligned_cols=114 Identities=21% Similarity=0.266 Sum_probs=85.6
Q ss_pred eEEEEEEEeC------CCeEEEEeecC-CCCCCCceeeeeEEecCCC-CHHHHHHHHHHHHhCCceeeeEEEEEEeeecc
Q 019077 186 IGVGGFVMND------KREVLVVKEKC-PRSCSGMWKIPTGYINKSE-DLFSGAVREVKEETGVDTIFLEMVAFRHVHLV 257 (346)
Q Consensus 186 v~V~avVin~------~~~VLLvrr~~-~~~~~g~W~lPGG~ve~GE-s~~eAA~REv~EETGl~v~~~~ll~~~~~~~~ 257 (346)
.+|.+.++.. +.+|||++|.. ....+|.|+||||++|+|| ++.+||+||+.||+||....+++++.......
T Consensus 34 AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t 113 (222)
T PLN02709 34 SAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN 113 (222)
T ss_pred cEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC
Confidence 4455455532 34899999983 3357999999999999974 79999999999999999988898887655544
Q ss_pred ccceeEEEEEEEEec-CCccccCCccccceEEEEchhhhhcCC
Q 019077 258 AFEKSDLLFVCMLKP-LSFEITIYEKEIQAAKWMPLEEFVKQP 299 (346)
Q Consensus 258 ~~~~~~~~fv~~l~~-~~~~i~~~~~Ei~~~~Wv~~eel~~l~ 299 (346)
..+....-|++.+.. ....+.++.+|++++.|+|++++.+..
T Consensus 114 ~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~~ 156 (222)
T PLN02709 114 KKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKDK 156 (222)
T ss_pred CCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCCc
Confidence 445555666666542 123445678899999999999987654
No 80
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.41 E-value=2.6e-12 Score=114.97 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=69.1
Q ss_pred CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeE----------------EEEEEe-eecccc
Q 019077 197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE----------------MVAFRH-VHLVAF 259 (346)
Q Consensus 197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~----------------ll~~~~-~~~~~~ 259 (346)
-+||+++|. ..|.|.||||+||+||++.+||+||++||||+.+.... .+.++. ....+.
T Consensus 49 l~vLl~~r~----~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr 124 (186)
T cd03670 49 LQFVAIKRP----DSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPR 124 (186)
T ss_pred eEEEEEEeC----CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCC
Confidence 478888886 45899999999999999999999999999976532210 111110 111111
Q ss_pred ----c-eeEEEEEEEEecCC--ccccC-CccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077 260 ----E-KSDLLFVCMLKPLS--FEITI-YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK 316 (346)
Q Consensus 260 ----~-~~~~~fv~~l~~~~--~~i~~-~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~ 316 (346)
. ...+.|.+...... ....+ ..+|..+++|+++++++.+.+.| ..+++.+++
T Consensus 125 ~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~dH-----~~Il~~a~~ 184 (186)
T cd03670 125 NTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANH-----SQFLKKVAE 184 (186)
T ss_pred CCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccccCH-----HHHHHHHHH
Confidence 1 12233333321000 11122 24578999999999999887776 456665553
No 81
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.41 E-value=3.6e-12 Score=118.86 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=83.5
Q ss_pred eEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCC-----------------HHHHHHHHHHHHhCCceee-
Q 019077 186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSED-----------------LFSGAVREVKEETGVDTIF- 245 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs-----------------~~eAA~REv~EETGl~v~~- 245 (346)
.++.++|+|++|++||+||. .+..++|.|... +|++..||+ ..+||+||++|||||.+..
T Consensus 57 ra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~ 136 (247)
T PLN02552 57 RAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDV 136 (247)
T ss_pred EEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcccc
Confidence 46788999999999999998 666789999666 355444322 6789999999999999643
Q ss_pred ----eEEEEEEee-eccc------c----ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC-CC---ccHH
Q 019077 246 ----LEMVAFRHV-HLVA------F----EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF-YL---EDDM 306 (346)
Q Consensus 246 ----~~ll~~~~~-~~~~------~----~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~-~~---~~~~ 306 (346)
...++.... .... . ...+.+++. ......++.++++|+.+++|++++++.++.. .+ -...
T Consensus 137 ~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~~~~~tpw 215 (247)
T PLN02552 137 PVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEMMRKESGLKLSPW 215 (247)
T ss_pred ccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHHHhhcCCcccCHH
Confidence 333332111 1111 0 122233222 2223447788899999999999999998632 11 1225
Q ss_pred HHHHHHHHHH
Q 019077 307 SRKVIDICIK 316 (346)
Q Consensus 307 ~~~ii~~~l~ 316 (346)
++.+++.++.
T Consensus 216 ~~~~~~~~l~ 225 (247)
T PLN02552 216 FRLIVDNFLM 225 (247)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 82
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.40 E-value=2.8e-12 Score=107.95 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=41.8
Q ss_pred EEEEEEeCCC--eEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCcee
Q 019077 188 VGGFVMNDKR--EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244 (346)
Q Consensus 188 V~avVin~~~--~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~ 244 (346)
|.+++.+.++ +||+.+.. . +.|.+|||.+++||++.+||+||++||||+++.
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~----~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~ 56 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP----L-AGFQIVKGTVEPGETPEAAALRELQEESGLPSF 56 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC----C-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeee
Confidence 4456666554 67666654 2 459999999999999999999999999999973
No 83
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.27 E-value=8.3e-11 Score=97.53 Aligned_cols=102 Identities=26% Similarity=0.449 Sum_probs=66.4
Q ss_pred CeEEEEeecCCCCCCCceeeeeEEecCCCCHHH-HHHHHHHHHhCCcee--eeEEEEEEeeecccc----ceeEEE-EEE
Q 019077 197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFS-GAVREVKEETGVDTI--FLEMVAFRHVHLVAF----EKSDLL-FVC 268 (346)
Q Consensus 197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~e-AA~REv~EETGl~v~--~~~ll~~~~~~~~~~----~~~~~~-fv~ 268 (346)
++||++++.... +.|.+|||++|+||++.+ ||+||++||||+.+. ....++......... ...... +.+
T Consensus 24 ~~vl~~~~~~~~---~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (161)
T COG0494 24 GEVLLAQRRDDG---GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFVA 100 (161)
T ss_pred CEEeEEEccccC---CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEEEEEEee
Confidence 789999988432 699999999999998888 999999999999988 445444433322221 111111 222
Q ss_pred EEec-CCccccCC---ccccceEEEEchhhhhcCCCC
Q 019077 269 MLKP-LSFEITIY---EKEIQAAKWMPLEEFVKQPFY 301 (346)
Q Consensus 269 ~l~~-~~~~i~~~---~~Ei~~~~Wv~~eel~~l~~~ 301 (346)
.... ....+... ..|...+.|++++++......
T Consensus 101 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 137 (161)
T COG0494 101 EVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLA 137 (161)
T ss_pred eccccccccccccCCCcchhhceeeeeHHHccccccc
Confidence 1110 11111111 257899999999998877544
No 84
>PLN02791 Nudix hydrolase homolog
Probab=99.26 E-value=5.2e-11 Score=125.88 Aligned_cols=113 Identities=22% Similarity=0.335 Sum_probs=81.7
Q ss_pred eEEEEEEEeC-CCeEEEEeec-CCCCCCCceee-eeEEecCCCCHHHHHHHHHHHHhCCceee--eEEEEEEeee----c
Q 019077 186 IGVGGFVMND-KREVLVVKEK-CPRSCSGMWKI-PTGYINKSEDLFSGAVREVKEETGVDTIF--LEMVAFRHVH----L 256 (346)
Q Consensus 186 v~V~avVin~-~~~VLLvrr~-~~~~~~g~W~l-PGG~ve~GEs~~eAA~REv~EETGl~v~~--~~ll~~~~~~----~ 256 (346)
.+|.++|+|. +++|||+||. .+..++|.|.+ +||+++.||+..+||+||+.||+||.+.. ..+++..... .
T Consensus 33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~ 112 (770)
T PLN02791 33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIND 112 (770)
T ss_pred EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccC
Confidence 5678889996 6999999998 66678999999 69999999999999999999999998643 2333322111 1
Q ss_pred c--ccceeEEEEEEEEecC--CccccCCccccceEEEEchhhhhcC
Q 019077 257 V--AFEKSDLLFVCMLKPL--SFEITIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 257 ~--~~~~~~~~fv~~l~~~--~~~i~~~~~Ei~~~~Wv~~eel~~l 298 (346)
. .....+.+|++..... ..++.++++|+.+++|++++|+.++
T Consensus 113 g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~ 158 (770)
T PLN02791 113 GKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA 158 (770)
T ss_pred CCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence 1 1112334455433111 1256778899999999999999754
No 85
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.19 E-value=3.2e-10 Score=92.46 Aligned_cols=110 Identities=18% Similarity=0.289 Sum_probs=74.8
Q ss_pred EEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEE
Q 019077 190 GFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCM 269 (346)
Q Consensus 190 avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~ 269 (346)
++++.+++++||.||...+.++|+|+||+|.++.+|+.+++..||+.||.++ ....++...+....+.....+|.+.
T Consensus 7 ~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~~ 83 (118)
T cd03431 7 VVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLAR 83 (118)
T ss_pred EEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEEE
Confidence 3444557899999999778899999999999999999999999999998875 1122332223333333333445554
Q ss_pred EecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHH
Q 019077 270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVID 312 (346)
Q Consensus 270 l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~ 312 (346)
.. ... .+..+.+|++++++.+++++. ..+++++
T Consensus 84 ~~--~~~-----~~~~~~~W~~~eel~~~~~p~---~~~kil~ 116 (118)
T cd03431 84 LE--GDL-----LAPDEGRWVPLEELDEYALPT---VMRKILE 116 (118)
T ss_pred Ee--CCC-----cCccccEEccHHHHhhCCCCH---HHHHHHH
Confidence 42 111 244678999999999998765 3445543
No 86
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.15 E-value=1.2e-10 Score=98.56 Aligned_cols=111 Identities=23% Similarity=0.345 Sum_probs=73.5
Q ss_pred ceEEEEEEEeCC---CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEE-EEEeeecccc-
Q 019077 185 QIGVGGFVMNDK---REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMV-AFRHVHLVAF- 259 (346)
Q Consensus 185 ~v~V~avVin~~---~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll-~~~~~~~~~~- 259 (346)
+..++++.+..+ -+|||+.-.++ +..|-+|+|++|++|+..+||.||+.||.|+.....+++ ++.+......
T Consensus 9 r~vagCi~~r~~~~~ieVLlvsSs~~---~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~ 85 (145)
T KOG2839|consen 9 RLVAGCICYRSDKEKIEVLLVSSSKK---PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHR 85 (145)
T ss_pred EEEEEeeeeeecCcceEEEEEecCCC---CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhc
Confidence 455666666633 38999998843 468999999999999999999999999999999888854 4432222211
Q ss_pred cee-EEEEEEEEecCCccccC-CccccceEEEEchhhhhcCC
Q 019077 260 EKS-DLLFVCMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQP 299 (346)
Q Consensus 260 ~~~-~~~fv~~l~~~~~~i~~-~~~Ei~~~~Wv~~eel~~l~ 299 (346)
... ..+|..... ..-+.-+ ...|..+.+|+.++|.....
T Consensus 86 ~~~k~~~~~l~v~-e~le~wp~~~~~~r~r~W~~ledA~~~~ 126 (145)
T KOG2839|consen 86 TKPKGVMYVLAVT-EELEDWPESEHEFREREWLKLEDAIELC 126 (145)
T ss_pred ccccceeehhhhh-hhcccChhhhcccceeEEeeHHHHHHHH
Confidence 111 122222211 1112222 23458899999999987764
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.93 E-value=2.6e-09 Score=97.14 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=80.2
Q ss_pred eEEEEEEEeC---CCeEEEEeec-CCCCCCCceeeeeEEecCCC-CHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc
Q 019077 186 IGVGGFVMND---KREVLVVKEK-CPRSCSGMWKIPTGYINKSE-DLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE 260 (346)
Q Consensus 186 v~V~avVin~---~~~VLLvrr~-~~~~~~g~W~lPGG~ve~GE-s~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~ 260 (346)
.+|...+++. +-+||+.+|. .-..+.|.-+||||..|+++ +-..+|.||..||+|++.+...+++.........+
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~ 123 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSG 123 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccC
Confidence 3444444543 2579999998 44568899999999999965 77789999999999999988888775444333333
Q ss_pred eeEEEEEEEEecCC--ccccCCccccceEEEEchhhhhcC
Q 019077 261 KSDLLFVCMLKPLS--FEITIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 261 ~~~~~fv~~l~~~~--~~i~~~~~Ei~~~~Wv~~eel~~l 298 (346)
....-+++.+.... ....++..|+.++.|+|++++..-
T Consensus 124 ~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 124 WSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred cccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 33333444332221 345677899999999999998764
No 88
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.93 E-value=1e-08 Score=90.85 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=68.5
Q ss_pred CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeE--EEEEEeeeccccceeEEEEEEEEe---
Q 019077 197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE--MVAFRHVHLVAFEKSDLLFVCMLK--- 271 (346)
Q Consensus 197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~--ll~~~~~~~~~~~~~~~~fv~~l~--- 271 (346)
-.++|+++.+++.++-..++|+|.+|.||+++.||+||++||||+.-+... ...+.++ ...+......++.++
T Consensus 88 ~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DP--Gltn~~~~iv~v~idg~~ 165 (225)
T KOG3041|consen 88 PYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDP--GLTNCNLCIVVVDIDGDV 165 (225)
T ss_pred EEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCC--CCCCCceEEEEEEecCCC
Confidence 468899999998888899999999999999999999999999999844322 2333333 222222233333332
Q ss_pred cCCc--cccCCccccceEEEEchhhhhcC
Q 019077 272 PLSF--EITIYEKEIQAAKWMPLEEFVKQ 298 (346)
Q Consensus 272 ~~~~--~i~~~~~Ei~~~~Wv~~eel~~l 298 (346)
+.+. ...+++.|..++.-++..++.+.
T Consensus 166 pEnqrp~q~ledgEfIev~~i~~~~L~~~ 194 (225)
T KOG3041|consen 166 PENQRPVQQLEDGEFIEVFLIPLSELWRE 194 (225)
T ss_pred ccccCccccCCCCceEEEEEeeHHHHHHH
Confidence 1121 12345678888888888887653
No 89
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.90 E-value=1.2e-08 Score=83.83 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=65.3
Q ss_pred EEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEE
Q 019077 190 GFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCM 269 (346)
Q Consensus 190 avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~ 269 (346)
+++++.++++||.||...+.++|+|+||.-.++. +...+++.+.+.+..|+.+...+.++...+...++.....+|.+.
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~~ 80 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEVE 80 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEEE
T ss_pred EEEEEeCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEEE
Confidence 5788899999999999888999999999988874 334666666777888988776666665545555444455566665
Q ss_pred EecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077 270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 270 l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
+..... .+..+.+|++++++.+++++.
T Consensus 81 ~~~~~~------~~~~~~~W~~~~~l~~~~~p~ 107 (114)
T PF14815_consen 81 VSADPP------AEPEEGQWVSLEELDQYPLPT 107 (114)
T ss_dssp EE-SS----------TTEEEEEGGGGGGS---H
T ss_pred ecCCCC------CCCCCcEEEEHHHHhhCCCCH
Confidence 542111 145788999999999998875
No 90
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.84 E-value=9.7e-09 Score=89.57 Aligned_cols=116 Identities=15% Similarity=0.222 Sum_probs=85.9
Q ss_pred eEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeEE---E-EEEeeeccc-
Q 019077 186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLEM---V-AFRHVHLVA- 258 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~l---l-~~~~~~~~~- 258 (346)
.+..++++|.+|++|+.||. .+..+++.|.-- .|+--+||+..+|++|-+.+|+||+...... + .+.+.....
T Consensus 34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~ 113 (185)
T COG1443 34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPD 113 (185)
T ss_pred hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCC
Confidence 45678999999999999999 777899999865 4888899999999999999999999873222 2 122222222
Q ss_pred -cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077 259 -FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302 (346)
Q Consensus 259 -~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~ 302 (346)
.....+.++...+..+ .+.++++|+.+++|++.+++.++....
T Consensus 114 ~~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~~ 157 (185)
T COG1443 114 GIVENEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDAT 157 (185)
T ss_pred CcceeeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcCC
Confidence 2233444554444233 667778999999999999998875443
No 91
>PLN02839 nudix hydrolase
Probab=98.69 E-value=5.2e-07 Score=87.97 Aligned_cols=112 Identities=20% Similarity=0.300 Sum_probs=75.7
Q ss_pred eEEEEEEEe-CCCeEEEEeec-CCCCCCCcee-eeeEEecCCCCHHHHHHHHHHHHhCCceee---eEEEEEEeeec-cc
Q 019077 186 IGVGGFVMN-DKREVLVVKEK-CPRSCSGMWK-IPTGYINKSEDLFSGAVREVKEETGVDTIF---LEMVAFRHVHL-VA 258 (346)
Q Consensus 186 v~V~avVin-~~~~VLLvrr~-~~~~~~g~W~-lPGG~ve~GEs~~eAA~REv~EETGl~v~~---~~ll~~~~~~~-~~ 258 (346)
+.+.+++.. .+.++.+.||. .+..++|+|. +.+|.+..||++.++++||+.||.||.... ..-.+...... ..
T Consensus 206 VHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~ 285 (372)
T PLN02839 206 VHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQ 285 (372)
T ss_pred EEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcC
Confidence 334444443 33578888888 7778999998 568999999999999999999999997542 22223222111 11
Q ss_pred cc-eeEEEEEEEEe-cCCccccCCccccceEEEEchhhhhc
Q 019077 259 FE-KSDLLFVCMLK-PLSFEITIYEKEIQAAKWMPLEEFVK 297 (346)
Q Consensus 259 ~~-~~~~~fv~~l~-~~~~~i~~~~~Ei~~~~Wv~~eel~~ 297 (346)
.+ .....|++.+. +.+...++++.|++++.+++++|+.+
T Consensus 286 ~g~~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~ 326 (372)
T PLN02839 286 YCFKRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVAN 326 (372)
T ss_pred CccccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHH
Confidence 11 23455566554 22333466789999999999999874
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.37 E-value=2.4e-06 Score=70.89 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=70.2
Q ss_pred EEEEEEEe-CC--CeEEEEeecCC---CCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee-EEEEEEeeecccc
Q 019077 187 GVGGFVMN-DK--REVLVVKEKCP---RSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL-EMVAFRHVHLVAF 259 (346)
Q Consensus 187 ~V~avVin-~~--~~VLLvrr~~~---~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~-~ll~~~~~~~~~~ 259 (346)
.+++++.. .. -.|||++--++ ....|.|++|.|....||++..||.||..||+||.++-. ..++.. ...-
T Consensus 5 SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~---kQ~G 81 (161)
T COG4119 5 SAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSL---KQSG 81 (161)
T ss_pred cceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhh---ccCC
Confidence 34555554 22 34666654422 124689999999999999999999999999999988421 112211 1111
Q ss_pred ceeEEEEEEEE----------------ecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHH
Q 019077 260 EKSDLLFVCML----------------KPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKV 310 (346)
Q Consensus 260 ~~~~~~fv~~l----------------~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~i 310 (346)
++..+.|.... .+.++..+. =.|+..+.|+++++...-....+..++..+
T Consensus 82 GKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~-FPEVDRagWF~l~eAr~Kil~gQRpfldrL 147 (161)
T COG4119 82 GKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRK-FPEVDRAGWFPLAEARTKILKGQRPFLDRL 147 (161)
T ss_pred CcEEEEEeeeeeeehhhhhcceeeeecCCCCCcccc-CcccccccceecHHHHhHHhhccchHHHHH
Confidence 23333333221 122222111 247889999999998765554443333333
No 93
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.00013 Score=66.06 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=35.8
Q ss_pred CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhC
Q 019077 197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG 240 (346)
Q Consensus 197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETG 240 (346)
-+++.+||. ..+.|.+|||.||+||.+-.+.+||+.||.=
T Consensus 139 le~vavkr~----d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 139 LEFVAVKRP----DNGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred eEEEEEecC----CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 467788887 6789999999999999999999999999974
No 94
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.67 E-value=7.5e-05 Score=66.79 Aligned_cols=130 Identities=14% Similarity=0.204 Sum_probs=85.3
Q ss_pred eEEEEEEEeCCCeEEEEeec-CCCCCCCceee---------eeEEec-CCCCHHHHHHHHHHHHhCCceeeeE-----EE
Q 019077 186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKI---------PTGYIN-KSEDLFSGAVREVKEETGVDTIFLE-----MV 249 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~l---------PGG~ve-~GEs~~eAA~REv~EETGl~v~~~~-----ll 249 (346)
.+..++++|.++++||+||. .+-.+++.|.- |+..-+ .+..+..||+|-+.-|+||..+.+. ++
T Consensus 53 RaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~l 132 (225)
T KOG0142|consen 53 RAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFL 132 (225)
T ss_pred heeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccc
Confidence 45678999999999999998 55567787762 222221 1346789999999999999876543 34
Q ss_pred EEEeee---ccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCcc---HHHHHHHHHHHH
Q 019077 250 AFRHVH---LVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED---DMSRKVIDICIK 316 (346)
Q Consensus 250 ~~~~~~---~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~---~~~~~ii~~~l~ 316 (346)
+..+.. ...+|...+-|+..+.. +-.++++++|+.+++|++.+|+..+--.+.. ..++.+.+.++-
T Consensus 133 trihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~~l~ 204 (225)
T KOG0142|consen 133 TRIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISENFLF 204 (225)
T ss_pred eeeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhccccCCChHHHHHHHHHHH
Confidence 333221 22345445555544442 4567778899999999999999876332221 266666665543
No 95
>PRK10880 adenine DNA glycosylase; Provisional
Probab=97.43 E-value=0.0008 Score=66.15 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=61.7
Q ss_pred eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL 265 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~ 265 (346)
....++++.+++++|+.||...+.++|+|+||.. +.. ...++..|+.|+.......++...+...++......
T Consensus 231 ~~~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~ 303 (350)
T PRK10880 231 RTGYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--ADE-----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVP 303 (350)
T ss_pred EEEEEEEEEECCEEEEEECCccChhhccccCCCC--cch-----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEE
Confidence 3444555666789999999977889999999963 211 124566688887532221122222222222212223
Q ss_pred EEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHH
Q 019077 266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDI 313 (346)
Q Consensus 266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~ 313 (346)
|.+... ...... . ..+..|++++++.+++++. ..+++++.
T Consensus 304 ~~~~~~--~~~~~~-~--~~~~~w~~~~~~~~~~~p~---~~~k~l~~ 343 (350)
T PRK10880 304 MWLPVS--SFTGCM-D--EGNGLWYNLAQPPSVGLAA---PVERLLQQ 343 (350)
T ss_pred EEEEcc--cccccc-C--CcCCeEechHHhcccCCcH---HHHHHHHH
Confidence 333221 110000 1 1234699999999998876 44555543
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.37 E-value=0.0012 Score=57.40 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=73.0
Q ss_pred EEEEeCCCeEEEEeecCCC---CCCCceeee-eEEecCCCC---HHH----HHHHHHHHHhCCc---eeeeEEEEEEeee
Q 019077 190 GFVMNDKREVLVVKEKCPR---SCSGMWKIP-TGYINKSED---LFS----GAVREVKEETGVD---TIFLEMVAFRHVH 255 (346)
Q Consensus 190 avVin~~~~VLLvrr~~~~---~~~g~W~lP-GG~ve~GEs---~~e----AA~REv~EETGl~---v~~~~ll~~~~~~ 255 (346)
+++.| .++||+-.|-..+ ...+.+++- ||++..++. ..+ .+.||+.||.++. ......+++....
T Consensus 66 vvi~~-edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd 144 (203)
T COG4112 66 VVIMD-EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDD 144 (203)
T ss_pred EEEec-CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCC
Confidence 34444 4599999887221 224566654 899987653 222 3679999999998 5557778887666
Q ss_pred ccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhc
Q 019077 256 LVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297 (346)
Q Consensus 256 ~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~ 297 (346)
....++.++-.++..+....++...+.+.-+.+|+.++++.+
T Consensus 145 ~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 145 TNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred CcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence 666666666655555433344555677788999999999987
No 97
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.05 E-value=9.7e-05 Score=70.66 Aligned_cols=106 Identities=26% Similarity=0.322 Sum_probs=67.2
Q ss_pred cceEEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee--EEEEEEeeeccccc
Q 019077 184 HQIGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL--EMVAFRHVHLVAFE 260 (346)
Q Consensus 184 ~~v~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~--~ll~~~~~~~~~~~ 260 (346)
..+..+++++|.. .++||++.- ....|.+|-|++...|+-.++|+|||.||||.+.... +..++ .....+
T Consensus 81 ~iPv~ga~ild~~~sr~llv~g~----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~I---e~nI~d 153 (348)
T KOG2937|consen 81 RIPVRGAIILDEKRSRCLLVKGW----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGI---ETNIRD 153 (348)
T ss_pred CCCCchHhhhhhhhhhhheeece----ecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCc---ccchhh
Confidence 3345677888865 789998876 3356999999999999999999999999999988531 11111 111111
Q ss_pred eeEEEEEEEEecCCccccCC-ccccceEEEEchhhhh
Q 019077 261 KSDLLFVCMLKPLSFEITIY-EKEIQAAKWMPLEEFV 296 (346)
Q Consensus 261 ~~~~~fv~~l~~~~~~i~~~-~~Ei~~~~Wv~~eel~ 296 (346)
.....|+.-....+..+.+. -.|++.+.|..++++.
T Consensus 154 q~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 154 QLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLV 190 (348)
T ss_pred ceeeeeeeccceeeeecchhhhccccceeeeehhhhc
Confidence 12222222111111111111 3588999999999983
No 98
>PRK13910 DNA glycosylase MutY; Provisional
Probab=95.44 E-value=0.1 Score=50.06 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEEEeCCCeEEEEeecCCCCCCCceeeee
Q 019077 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPT 218 (346)
Q Consensus 188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPG 218 (346)
..++++ .++++||.||. .+.++|+|+||+
T Consensus 189 ~~~~~~-~~~~~ll~kr~-~~l~~gl~~fP~ 217 (289)
T PRK13910 189 YLGVVI-QNNQIALEKIE-QKLYLGMHHFPN 217 (289)
T ss_pred EEEEEE-ECCEEEEEECC-CchhcccccCCC
Confidence 333444 46789999885 568999999996
No 99
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.92 E-value=0.086 Score=50.21 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=72.5
Q ss_pred eEEEEEEEe-CCCeEEEEeecCCCCCCC---------------------------ceeeeeEEecCCCCHHHHHHHHHHH
Q 019077 186 IGVGGFVMN-DKREVLVVKEKCPRSCSG---------------------------MWKIPTGYINKSEDLFSGAVREVKE 237 (346)
Q Consensus 186 v~V~avVin-~~~~VLLvrr~~~~~~~g---------------------------~W~lPGG~ve~GEs~~eAA~REv~E 237 (346)
-.|.++++| ...++.|+|+.+++.+.| ..+|-.|.|+..-+..+-|.||..|
T Consensus 230 dSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~ve 309 (405)
T KOG4432|consen 230 DSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARESVE 309 (405)
T ss_pred CceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHHHH
Confidence 457778887 345666666554433222 2345578888888899999999999
Q ss_pred HhCCceeeeE--EEEEEeeeccccceeEEEEEEEEecCC----ccccCCccccceEEEEchhhhhcCC
Q 019077 238 ETGVDTIFLE--MVAFRHVHLVAFEKSDLLFVCMLKPLS----FEITIYEKEIQAAKWMPLEEFVKQP 299 (346)
Q Consensus 238 ETGl~v~~~~--ll~~~~~~~~~~~~~~~~fv~~l~~~~----~~i~~~~~Ei~~~~Wv~~eel~~l~ 299 (346)
|.|+++...+ .+..+-+.....+-...+|+|.+.... +--..+++|+.++.-+++++++.+.
T Consensus 310 ecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~ 377 (405)
T KOG4432|consen 310 ECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLY 377 (405)
T ss_pred HhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHH
Confidence 9999986543 333333333334455667777664322 1122345678888889999987653
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.91 E-value=0.043 Score=52.16 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=56.6
Q ss_pred eEEEEEEEeCC-CeEEEEeecCCCCC-------------------------CCceeeeeEEecCCCCHHHHHHHHHHHHh
Q 019077 186 IGVGGFVMNDK-REVLVVKEKCPRSC-------------------------SGMWKIPTGYINKSEDLFSGAVREVKEET 239 (346)
Q Consensus 186 v~V~avVin~~-~~VLLvrr~~~~~~-------------------------~g~W~lPGG~ve~GEs~~eAA~REv~EET 239 (346)
-+|.+++++.+ .++|++|+.++... +-..++-+|.||..-++.+-|..||.||.
T Consensus 27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eec 106 (405)
T KOG4432|consen 27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEEC 106 (405)
T ss_pred cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence 45666666654 56777766533221 11345779999999999999999999999
Q ss_pred CCceeeeEEEEEEeeecc--ccceeEEEEEEEEe
Q 019077 240 GVDTIFLEMVAFRHVHLV--AFEKSDLLFVCMLK 271 (346)
Q Consensus 240 Gl~v~~~~ll~~~~~~~~--~~~~~~~~fv~~l~ 271 (346)
|+++...++..+...... ..+.....|+|.+.
T Consensus 107 gy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~ 140 (405)
T KOG4432|consen 107 GYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID 140 (405)
T ss_pred CCcCChhHceEEEEEEeccccCccchheeeeecc
Confidence 999988766544333222 22334456777654
No 101
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=94.44 E-value=0.14 Score=47.61 Aligned_cols=109 Identities=17% Similarity=0.255 Sum_probs=68.0
Q ss_pred eEEEEEEEeCC---CeEEEEeec-CCCCCCCcee-eeeEEecCCCCHHHHHHHHHHHHhCCceeeeEE-E--E---EEee
Q 019077 186 IGVGGFVMNDK---REVLVVKEK-CPRSCSGMWK-IPTGYINKSEDLFSGAVREVKEETGVDTIFLEM-V--A---FRHV 254 (346)
Q Consensus 186 v~V~avVin~~---~~VLLvrr~-~~~~~~g~W~-lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~l-l--~---~~~~ 254 (346)
+.+.+.|.+.+ -++.+.||+ .+..|+|.|. +.+|.+--|-.+.++|+.|..||..+......- + | +...
T Consensus 134 vhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~ 213 (306)
T KOG4313|consen 134 VHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKF 213 (306)
T ss_pred eeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEee
Confidence 34445555544 357788887 5567899997 668999999999999999999999998733221 1 1 1111
Q ss_pred eccccceeEEEEEEEEecCCcccc--CCccccceEEEEchhhh
Q 019077 255 HLVAFEKSDLLFVCMLKPLSFEIT--IYEKEIQAAKWMPLEEF 295 (346)
Q Consensus 255 ~~~~~~~~~~~fv~~l~~~~~~i~--~~~~Ei~~~~Wv~~eel 295 (346)
.....-....-|++.+. .+.++. +.+.|++.+..+++.|.
T Consensus 214 esr~~~~pe~qYVfDL~-l~~d~iP~~nDGEV~~F~Lltl~~~ 255 (306)
T KOG4313|consen 214 ESRQGLFPETQYVFDLE-LPLDFIPQNNDGEVQAFELLTLKDC 255 (306)
T ss_pred ehhhccCccceEEEecc-CchhhcCCCCCCceeeEeeecHHHH
Confidence 11110112345666654 233333 34567888777776654
No 102
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=93.85 E-value=0.18 Score=49.25 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=64.1
Q ss_pred CCCCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc
Q 019077 178 LPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV 257 (346)
Q Consensus 178 lp~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~ 257 (346)
.|.....+...+.++.+.+++++|.+|...+...|+|.+|....+. .. .+...+.|+.. +.++...+...
T Consensus 228 ~~k~~~~~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~--~~-----~~~~~~~~~~~---~~~~~~~H~ft 297 (342)
T COG1194 228 KPKKKLPRRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA--DL-----LDWLAADGLAA---EPLGAFRHTFT 297 (342)
T ss_pred CcccccchheeeEEEEccCcchhhhhCcccCceecccccccccccc--hh-----hhHhhhccccc---ccccceeeeee
Confidence 3344444566777778888999999999888899999999976544 22 22233334433 22322222222
Q ss_pred ccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHH
Q 019077 258 AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDI 313 (346)
Q Consensus 258 ~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~ 313 (346)
.+. ..+.+.... .. .+. +..|++++++...+++. .++++++.
T Consensus 298 h~~-l~i~~~a~~--~~-------~~~-~~~w~~~~~~~~~~l~~---p~~k~l~~ 339 (342)
T COG1194 298 HFR-LTIELRASA--SL-------VLS-DGRWYNLSDLESIGLPA---PVKKLLQQ 339 (342)
T ss_pred EEE-EEEEEEeec--cc-------CCC-CceeccccccccccccH---HHHHHHHH
Confidence 221 112222211 11 222 78999999999887765 44555544
No 103
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=93.47 E-value=0.2 Score=44.95 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=30.7
Q ss_pred CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCc
Q 019077 197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242 (346)
Q Consensus 197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~ 242 (346)
-.|||.|.. ...|.||||.+.+||+..++..|.+.+-.|..
T Consensus 58 PHvLLLq~~-----~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 58 PHVLLLQIG-----NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEEET-----TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred cEEEEEecc-----CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 579999864 34899999999999999999999999999975
No 104
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=90.18 E-value=0.56 Score=41.25 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=34.7
Q ss_pred CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhC
Q 019077 197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG 240 (346)
Q Consensus 197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETG 240 (346)
-.|||.|-. .-.+++|||.+++||+-.+...|-+-|-.|
T Consensus 84 PHvLLLQig-----~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 84 PHVLLLQIG-----NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred CeEEEEeeC-----CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 578887753 468999999999999999999999999999
No 105
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=85.10 E-value=1.9 Score=41.14 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=25.0
Q ss_pred EEEEEEeCCCeEEEEeecCCCCCCCceeeeeE
Q 019077 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTG 219 (346)
Q Consensus 188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG 219 (346)
...++.+.++++|+++|...+..+|+|+||+.
T Consensus 230 ~~~~~~~~~~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 230 YFLVLQNYDGEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred EEEEEEeCCCeEEEEeCCCCchhhccccCCCC
Confidence 33344456789999999977789999999973
No 106
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=82.96 E-value=4 Score=38.23 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=58.8
Q ss_pred CeEEEEeecCCCCCCCceeeeeEEe-cCCCCHHHHHHHHHHHHhCCceeeeEE----EEEEeeec-----ccc--ceeEE
Q 019077 197 REVLVVKEKCPRSCSGMWKIPTGYI-NKSEDLFSGAVREVKEETGVDTIFLEM----VAFRHVHL-----VAF--EKSDL 264 (346)
Q Consensus 197 ~~VLLvrr~~~~~~~g~W~lPGG~v-e~GEs~~eAA~REv~EETGl~v~~~~l----l~~~~~~~-----~~~--~~~~~ 264 (346)
.=+|||+++-. ..+.|.||-+.. +.|+++..+|.|++++-.|=.....-+ ++...... ... +....
T Consensus 139 ~LyLLV~~k~g--~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~f 216 (263)
T KOG4548|consen 139 KLYLLVKRKFG--KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVF 216 (263)
T ss_pred eEEEEEeeccC--ccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeE
Confidence 34788886511 357999999999 999999999999999988855432211 22110000 011 11233
Q ss_pred EEEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077 265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP 299 (346)
Q Consensus 265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~ 299 (346)
+|-|.+.+.+ .. +..-..+..|++-+++.+..
T Consensus 217 f~k~~lv~~~-~~--kn~n~edfvWvTkdel~e~l 248 (263)
T KOG4548|consen 217 FFKASLVANS-NQ--KNQNKEDFVWVTKDELGEKL 248 (263)
T ss_pred Eeeeeecccc-ch--hcccccceEEechHHHhhhc
Confidence 4444443221 11 22334569999999998864
No 107
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=80.59 E-value=7.2 Score=36.70 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=36.9
Q ss_pred eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHH-HHHHhCCceeeeEEE
Q 019077 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVRE-VKEETGVDTIFLEMV 249 (346)
Q Consensus 186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~RE-v~EETGl~v~~~~ll 249 (346)
++|.+.|.+..-+||-|.+.. .+|.|-.|++-.-.++-.|+ |.+.|+.....++.+
T Consensus 26 iaVvvAv~~~~p~VLtV~q~~--------aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQL 82 (322)
T COG4111 26 IAVVVAVTDGGPRVLTVRQGA--------ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQL 82 (322)
T ss_pred eEEEEEEcCCCceEEEecccc--------cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhh
Confidence 334434444556888887651 28999999986566666666 677788877665544
No 108
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=43.51 E-value=21 Score=23.88 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=12.0
Q ss_pred eeeEEecCCCCHHHHHHHHHHHHh
Q 019077 216 IPTGYINKSEDLFSGAVREVKEET 239 (346)
Q Consensus 216 lPGG~ve~GEs~~eAA~REv~EET 239 (346)
.-||...+|--+...+.||+-||.
T Consensus 13 ClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCCCCCchHHHHHHHHHH
Confidence 457888899989999999999996
No 109
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=43.11 E-value=8.4 Score=37.86 Aligned_cols=37 Identities=38% Similarity=0.388 Sum_probs=27.1
Q ss_pred Ccccccc-ccCcccCCccccccCCCCCCCCCCCCCCCC
Q 019077 1 MMAAALL-NGSRCSSGFRCQNFAKEPTTSLPKTRPFPM 37 (346)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (346)
|||.+|| +.|||++-..|-.---.-.-+++-++||.-
T Consensus 1 m~A~rllrt~s~~~~~~~Cv~~~~~~~~~~h~skp~~v 38 (474)
T KOG0558|consen 1 MMARRLLRTHSRLSSSSVCVPEYFSLSSSLHVSKPFFV 38 (474)
T ss_pred ChhHHhhhhcccccccchhHHHHHhhccCccccCcceE
Confidence 8999999 999999999996322233445667777743
No 110
>PF12860 PAS_7: PAS fold
Probab=40.88 E-value=12 Score=29.81 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=34.8
Q ss_pred EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHH
Q 019077 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVR 233 (346)
Q Consensus 187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~R 233 (346)
..|++++|.++++++..++ ....|.+|...+.+|-++.+.+.+
T Consensus 5 ~~Gv~v~D~~~rl~~~N~~----~~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 5 PQGVAVFDSDGRLVFWNQR----FRELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CceEEEEcCCCeEEeEcHH----HHHHhCCCHHHhcCCCCHHHHHHH
Confidence 3577899999999999888 567899999999888886665543
No 111
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=36.29 E-value=9.5 Score=37.17 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=47.5
Q ss_pred CCCCCCCccceEEEEEEEeCC--CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCcee
Q 019077 176 CMLPGSPSHQIGVGGFVMNDK--REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244 (346)
Q Consensus 176 ~~lp~~~~~~v~V~avVin~~--~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~ 244 (346)
++.|.+......+++++.+-+ .-+.++-+.. -+..|.||-|.+..||-..++++|+-.||+|....
T Consensus 229 ak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~---~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 229 AKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFA---KPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred hcCcccCccchhHHhhhhccccccceeeccccc---ccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 555555555566656666632 3344444433 34689999999999999999999999999998764
No 112
>PF14443 DBC1: DBC1
Probab=35.99 E-value=81 Score=26.59 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=25.3
Q ss_pred CCceeee--eEEecCC-CCHHHHHHHHHHHHhCCceee
Q 019077 211 SGMWKIP--TGYINKS-EDLFSGAVREVKEETGVDTIF 245 (346)
Q Consensus 211 ~g~W~lP--GG~ve~G-Es~~eAA~REv~EETGl~v~~ 245 (346)
+|.|.-- ||-.+.+ ..+..+|+|-++|-|||+...
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 4667644 4444443 368999999999999999754
No 113
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=31.17 E-value=20 Score=32.12 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=41.3
Q ss_pred ceeEeeccccCCCCCCCCCC---ccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEe---cCCCCHHHHH
Q 019077 163 GYVMLTYWIPVEPCMLPGSP---SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYI---NKSEDLFSGA 231 (346)
Q Consensus 163 ~~~~l~~wl~~~~~~lp~~~---~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~v---e~GEs~~eAA 231 (346)
+.+|+..|+.+.|..+...- ...+|...+|+-.+|++.+..|.+.....-.-.||||.- ..|+++.|++
T Consensus 4 ~~lml~Ewm~~~p~~l~~~w~~~~~P~G~R~lvv~~~g~t~~~~r~g~~~~~f~s~lP~g~~~~~~~g~tILDci 78 (186)
T cd09232 4 NQLMLSEWMVEVPDDLSEEWLVVPCPVGKRCLVVASKGKTVARSKNGRTLHRFSSALPGGSRKTSNSGYTILDCI 78 (186)
T ss_pred cceechhhcccCCCccCcceEEEECcCceEEEEEEeCCEEEEEeCCCCEEEecccCCCCCCcCCCCCCCEEEEEe
Confidence 45677777776655543321 122556666666678888887764433344567899873 3566665554
No 114
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.09 E-value=2.3e+02 Score=20.61 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.5
Q ss_pred CCceeeeeEEecCCCC
Q 019077 211 SGMWKIPTGYINKSED 226 (346)
Q Consensus 211 ~g~W~lPGG~ve~GEs 226 (346)
...|-+|||.|-.+--
T Consensus 21 ~~GWl~Pgg~vi~NPl 36 (60)
T PF07026_consen 21 KNGWLMPGGKVITNPL 36 (60)
T ss_pred cceeecCCCeeEcCHH
Confidence 3579999999987643
Done!