BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019078
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 20 GYYVGIDPRKKLVILGIRGTHTVYDLITDIVSSGSEEVTFEGYSTHFGTAEAARWFLNHE 79
GY + D ++K + L RGT++ ITDIV + S+ +G H G + +N
Sbjct: 65 GYVLRSD-KQKTIYLVFRGTNSFRSAITDIVFNFSDYKPVKGAKVHAGFLSSYEQVVNDY 123
Query: 80 MGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKK 117
+++ L +H +++ + GHSLGGA L M L ++
Sbjct: 124 FPVVQEQLTAHPTYKVIVTGHSLGGAQALLAGMDLYQR 161
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 13 NSSVMRPGYYVGIDPRKKLVILGIRGTHTVYDLITDIVSSGSEEVTFEGYSTHFGTAEAA 72
+S++ Y+ +D V+L RG+++V + + D + +G G +
Sbjct: 57 DSTITDTAGYIAVDHTNSAVVLAFRGSYSVRNWVADATFVHTNPGLCDGCLAELGFWSSW 116
Query: 73 RWFLNHEMGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKKSFKELGFSPDIVTAV 132
+ + + +++ + + + L +VGHSLG A+ +L A LR K +
Sbjct: 117 KLVRDDIIKELKEVVAQNPNYELVVVGHSLGAAVATLAATDLRGKGYPSAKL-------Y 169
Query: 133 AYATPPCVSRELAE 146
AYA+P + LA+
Sbjct: 170 AYASPRVGNAALAK 183
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 22 YVGIDPRKKLVILGIRGTHTVYDLITDI------------VSSGSEEVTFEGYSTHFGTA 69
Y+ +D K + L IRGTH++ D+ITDI ++ S T + H G
Sbjct: 71 YLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFI 130
Query: 70 EAARWFLNHEMGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKKSFKELGFSPDIV 129
++ N + +E + +++ + GHSLGGA L + L+ G P +V
Sbjct: 131 QSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVN-----GHDPLVV 185
Query: 130 T 130
T
Sbjct: 186 T 186
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 20 GYYVGIDPRKKLVILGIRGTHTVYDLITDIVSSGSEEVTFEGYSTHFGTAEAARWFLNHE 79
G YV DP +K +++ RG+ + + +T++ + G H G A
Sbjct: 63 GGYVATDPTRKEIVVSFRGSINIRNWLTNLDFDQDDCSLTSGCGVHSGFQNAWNEISAAA 122
Query: 80 MGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKKSFKELGFSP-DIVTAVAYATPP 138
+ + +++ F++ VGHSLGGA+ +L LR +G +P DI T Y +P
Sbjct: 123 TAAVAKARKANPSFKVVSVGHSLGGAVATLAGANLR------IGGTPLDIYT---YGSPR 173
Query: 139 CVSRELA 145
+ +LA
Sbjct: 174 VGNTQLA 180
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 22 YVGIDPRKKLVILGIRGTHTVYDLITDIVSSGSE-EVTFEGYSTHFGTAEAARWFLNHEM 80
++ +D KL++L RG+ ++ + I ++ E G H G + R +
Sbjct: 66 FLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLR 125
Query: 81 GTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKKSFKELGFSPDIVTAVAYATPPCV 140
+ + H +R+ GHSLGGA+ ++ LR + + +Y P
Sbjct: 126 QKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYD--------IDVFSYGAPRVG 177
Query: 141 SRELAE 146
+R AE
Sbjct: 178 NRAFAE 183
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 22 YVGIDPRKKLVILGIRGTHTVYDLITDIVSSGSE-EVTFEGYSTHFGTAEAARWFLNHEM 80
++ +D KL++L RG+ ++ + I ++ E G H G + R +
Sbjct: 66 FLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLR 125
Query: 81 GTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKKSFKELGFSPDIVTAVAYATPPCV 140
+ + H +R+ GH+LGGA+ ++ LR + + +Y P
Sbjct: 126 QKVEDAVREHPDYRVVFTGHALGGALATVAGADLRGNGYD--------IDVFSYGAPRVG 177
Query: 141 SRELAE 146
+R AE
Sbjct: 178 NRAFAE 183
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 1 MLRESNILKFEKNSSVMRPGYYVGIDPRKKLVILGIRGTHTVYDLITDIVSSGSEEVTFE 60
+++ + L ++ N+ V R D K + I+ RG+ ++ + I D+
Sbjct: 51 IIKTWSTLIYDTNAMVARG------DSEKTIYIV-FRGSSSIRNWIADLTFVPVSYPPVS 103
Query: 61 GYSTHFGTAEAARWFLNHEMGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKK 117
G H G ++ N + T+ + + +++ + GHSLGGA V L A+ L ++
Sbjct: 104 GTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATVLLCALDLYQR 160
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 1 MLRESNILKFEKNSSVMRPGYYVGIDPRKKLVILGIRGTHTVYDLITDIVSSGSEEVTFE 60
+++ + L ++ N+ V R D K + I+ RG+ ++ + I D+
Sbjct: 51 IIKTWSTLIYDTNAMVARG------DSEKTIYIV-FRGSSSIRNWIADLTFVPVSYPPVS 103
Query: 61 GYSTHFGTAEAARWFLNHEMGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKK 117
G H G ++ N + T+ + + +++ + GHSLGGA L A+ L ++
Sbjct: 104 GTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQR 160
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 1 MLRESNILKFEKNSSVMRPGYYVGIDPRKKLVILGIRGTHTVYDLITDIVSSGSEEVTFE 60
+++ + L ++ N+ V R D K + I+ RG+ ++ + I D+
Sbjct: 51 IIKTWSTLIYDTNAMVARG------DSEKTIYIV-FRGSSSIRNWIADLTFVPVSYPPVS 103
Query: 61 GYSTHFGTAEAARWFLNHEMGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKK 117
G H G ++ N + T+ + + +++ + GHSLGGA L A+ L ++
Sbjct: 104 GTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQR 160
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 1 MLRESNILKFEKNSSVMRPGYYVGIDPRKKLVILGIRGTHTVYDLITDIVSSGSEEVTFE 60
+++ + L ++ N+ V R D K + I+ RG+ ++ + I D+
Sbjct: 51 IIKTWSTLIYDTNAMVARG------DSEKTIYIV-FRGSSSIRNWIADLTFVPVSYPPVS 103
Query: 61 GYSTHFGTAEAARWFLNHEMGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKK 117
G H G ++ N + T+ + + +++ + GHSLGGA L A+ L ++
Sbjct: 104 GTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQR 160
>pdb|3G7N|A Chain A, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
pdb|3G7N|B Chain B, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
Length = 258
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 22 YVGIDPRKKLVILGIRGTHTVYDLITDI-VSSGSEEVTFEGYSTHFGTAEAAR--WFLNH 78
+VG KK + + +RG+ T+ D + DI ++ + E++ + + W H
Sbjct: 48 FVGYSTEKKTIAVIMRGSTTITDFVNDIDIALITPELSGVTFPSDVKIMRGVHRPWSAVH 107
Query: 79 E--MGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKK 117
+ + ++ + + + L VGHSLGGA+ S+ + L +
Sbjct: 108 DTIITEVKALIAKYPDYTLEAVGHSLGGALTSIAHVALAQN 148
>pdb|3QLI|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLI|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 254 VLEQEGDDGTVPEELFVPGTVYYLKRDVDTNTRSSDSRGREFFTL 298
VL+ D G + E+ PG V ++R V TN R + RGR FT
Sbjct: 252 VLKDRNDLG-IHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTF 295
>pdb|3S8D|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3S8D|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 254 VLEQEGDDGTVPEELFVPGTVYYLKRDVDTNTRSSDSRGREFFTL 298
VL+ D G + E+ PG V ++R V TN R + RGR FT
Sbjct: 252 VLKDRNDLG-IHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTF 295
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 75 FLNHEMGTIRQCLESHKGFRLRLVGHSLGGAIVSLLAMMLRKKSFKELGFSPDIVTAVAY 134
FLN ++G + ++ + GHS GGA+ S LA+ L+ +L + DI T + +
Sbjct: 155 FLNEKIGPEGKA-------KICVTGHSKGGALSSTLALWLKDIQGVKLSQNIDIST-IPF 206
Query: 135 ATPPCVSRELAESCSD 150
A P + + A+ D
Sbjct: 207 AGPTAGNADFADYFDD 222
>pdb|3FWX|A Chain A, The Crystal Structure Of The Peptide Deformylase From
Vibrio Cholerae O1 Biovar El Tor Str. N16961
pdb|3FWX|B Chain B, The Crystal Structure Of The Peptide Deformylase From
Vibrio Cholerae O1 Biovar El Tor Str. N16961
Length = 169
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 251 NATVLEQEGDDGTVPEELFVPGTVYYLKRDVDTNTRSSDSRGREF 295
N ++E+ G+DG L VPG + R + ++ D G+E+
Sbjct: 75 NPEIIEKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 94 RLRLVGHSLGGAIVSLLAMMLRKKSFKELGFSPDIVTAVAYATP 137
+ LVGHS GG + S+LA G PD++ V P
Sbjct: 120 NIYLVGHSQGGVVASMLA-----------GLYPDLIKKVVLLAP 152
>pdb|4A3Q|A Chain A, The 2.15 Angstrom Resolution Crystal Structure Of
Staphylococcus Aureus Alanine Racemase
pdb|4A3Q|B Chain B, The 2.15 Angstrom Resolution Crystal Structure Of
Staphylococcus Aureus Alanine Racemase
Length = 382
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 34 LGIRGTHTVYDLITDIVSSGSEEVTFEGYSTHFGTAE 70
LGI+ T+T Y + +I+ E++ FEG THF A+
Sbjct: 139 LGIKDTNT-YQEVIEIIQQ-YEQLVFEGVFTHFACAD 173
>pdb|3MDQ|A Chain A, Crystal Structure Of An Exopolyphosphatase (Chu_0316) From
Cytophaga Hutchinsonii Atcc 33406 At 1.50 A Resolution
Length = 315
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 38 GTHTVYDLITDIVSSGSEEVTFEGYSTHFGTAEAARWFLNHEMGTIRQCLESHKGFRLRL 97
GT+T + LITDIV+ + E + G + F+ E + L++ K FR+ L
Sbjct: 12 GTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEE--AXDRALDTLKKFRVIL 69
Query: 98 VGHSL 102
H++
Sbjct: 70 DEHAV 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,336,197
Number of Sequences: 62578
Number of extensions: 344783
Number of successful extensions: 772
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 19
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)