BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019080
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZSY2|DNJ15_ARATH Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1
SV=1
Length = 410
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 279/344 (81%), Positives = 313/344 (90%), Gaps = 13/344 (3%)
Query: 3 RHLDLSIFNYKSFQAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEA 62
RH D + F+A+DA+GMDMEIDLSNLGTVNTMFAALFSKLGVPIKTT+SANVLEEA
Sbjct: 76 RHYDNA-----GFEALDADGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVSANVLEEA 130
Query: 63 LNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQ 122
+NGTVTVRPLPIGTSVSGKVEKQCAHFFGVTI++QQAE+G+VVRVTSTAQSKFKLLYFEQ
Sbjct: 131 MNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTISEQQAESGVVVRVTSTAQSKFKLLYFEQ 190
Query: 123 DTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQ 182
D++GGYGLALQE+ EKTGKVTSAGMYFLHFQVYRMD+T+NA+A AKDPESAFFKRLEGLQ
Sbjct: 191 DSSGGYGLALQEEREKTGKVTSAGMYFLHFQVYRMDTTVNALAAAKDPESAFFKRLEGLQ 250
Query: 183 PCEVSELKAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELRE 242
PCEVSELKAGTHIFAVYGDNFFKTA+YTIEALCAK+YED ++KLK+IEAQILRKR ELR+
Sbjct: 251 PCEVSELKAGTHIFAVYGDNFFKTASYTIEALCAKTYEDTTEKLKEIEAQILRKRNELRQ 310
Query: 243 FEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLSTSSVSGNNLSNGS 302
FE EYRKALARFQE TNRY+QEKQ+VDELLKQRD IHS+F+V KT SGNNLSNGS
Sbjct: 311 FETEYRKALARFQEVTNRYTQEKQTVDELLKQRDTIHSTFSVVKT-----PSGNNLSNGS 365
Query: 303 SSKVPGEDSK--GESPAEDGSSDGKDKSAKKKWFNLNLKGSDKK 344
SSK G++SK G+S E+G ++ +DKS K+KWFNLNLKGSDKK
Sbjct: 366 SSKAQGDESKGDGDSAGEEGGTENRDKS-KRKWFNLNLKGSDKK 408
>sp|Q8VXV4|DNJ16_ARATH Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2
SV=1
Length = 436
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/357 (53%), Positives = 253/357 (70%), Gaps = 25/357 (7%)
Query: 10 FNYKSFQAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTV 69
F+ F+A++AE ++E+DLS+LG VNT+FAALFSKLGVPIKT++SA +LEEALNG V+V
Sbjct: 81 FDSAGFEAVEAESQELELDLSSLGAVNTVFAALFSKLGVPIKTSVSATILEEALNGRVSV 140
Query: 70 RPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYG 129
PL +G +VS KVEKQCAHF+ VTI++++ AG+V RV S+++SKFKLLYF+Q+ N G
Sbjct: 141 DPLVLGQAVSKKVEKQCAHFYAVTISEEEVSAGLVCRVESSSKSKFKLLYFDQEANSGLS 200
Query: 130 LALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSEL 189
LALQEDS++TGK+TSAGMYFL F VYR+D T+N++A AKDPE+AFFK+L+G Q CEV+EL
Sbjct: 201 LALQEDSKRTGKITSAGMYFLGFPVYRLDHTINSMAQAKDPETAFFKKLDGFQQCEVTEL 260
Query: 190 KAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRK 249
KAGTH+FAVYGDNFFK +YTI+ LCA ++ + L+ +EAQIL KR EL +FE EYR+
Sbjct: 261 KAGTHVFAVYGDNFFKNVSYTIQVLCAAAFTQEKEDLRSVEAQILTKRAELAKFETEYRE 320
Query: 250 ALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLSTSSVSGNNLSNGS------- 302
L +F + T+RY+QE QS+DELLKQR+ IHS++T + SS S N + S
Sbjct: 321 VLVQFTDMTSRYAQEMQSIDELLKQRNEIHSAYTTIPLMKRSS-SKNRMRKSSFKKAAAK 379
Query: 303 ---------------SSKVPGEDSKGESPAEDGSSDGKDKSAKKKWFNLNLKGSDKK 344
+ K + P+ S+ K K KWFNL+LK KK
Sbjct: 380 APAPTEQEEEEEEEEEEEEESSRQKNKKPSTCDKSETLKK--KSKWFNLHLKLDKKK 434
>sp|Q6XL73|DNJ39_ARATH Chaperone protein dnaJ 39 OS=Arabidopsis thaliana GN=ATJ39 PE=2
SV=2
Length = 414
Score = 320 bits (819), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 161/331 (48%), Positives = 230/331 (69%), Gaps = 9/331 (2%)
Query: 16 QAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIG 75
+A+ E D+E+DLS+LG VNT+FAALF+KLGV IKTT+SAN+L EALNGTVT PL +G
Sbjct: 90 EAVGPENEDLELDLSSLGAVNTIFAALFNKLGVQIKTTVSANLLGEALNGTVTTLPLMVG 149
Query: 76 TSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQED 135
VS KVEKQ AHF+ VT+ +++A+ G++ +V S+A++KFKLLYF+Q NGG LALQED
Sbjct: 150 QVVSRKVEKQSAHFYSVTLTEEEAQDGLICKVHSSAKNKFKLLYFDQVENGGLSLALQED 209
Query: 136 SEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHI 195
S KTGK+++AG+YF F VYR D +N+ A+++DPE+ FFKRL+ QP E++ELKAG+H+
Sbjct: 210 SRKTGKLSTAGLYFFGFPVYRFDHRVNSRALSRDPETGFFKRLDAFQPFEITELKAGSHV 269
Query: 196 FAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQ 255
FAVYGDNFFK+ +YT+E + + + + L+ EAQI+ KR EL +FE EY + A+F
Sbjct: 270 FAVYGDNFFKSVSYTLEIFSSAPFGNEKESLRSTEAQIVSKRTELLKFEAEYHEVFAQFT 329
Query: 256 EATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLSTSSVSGNNLSNGSSSKVPGEDSKGES 315
E ++ + E Q +DELLK+R+ I +++T+ S + S SS +
Sbjct: 330 EMASKCTGEVQEIDELLKRRNEICAAYTIFPPTKQGSSKSRSWSKKKSSLL-------ME 382
Query: 316 PAEDGSSDGKDKSA--KKKWFNLNLKGSDKK 344
P E+G +++ KKKW+N+ L+ KK
Sbjct: 383 PREEGEVAVREEGGVKKKKWYNIQLRQDKKK 413
>sp|C4XVQ6|MDM10_CLAL4 Mitochondrial distribution and morphology protein 10 OS=Clavispora
lusitaniae (strain ATCC 42720) GN=MDM10 PE=3 SV=1
Length = 459
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 14 SFQAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISAN--VLEEALNGTVTVRP 71
S QA D M LSN+ T+N A LFS P+K T+ L++A+ G + P
Sbjct: 48 STQATDHSASSMS--LSNMHTINGSLAYLFS--STPLKNTMGTRDVSLQDAVAGFRIIEP 103
Query: 72 LPIGTSV---SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGY 128
GT S V + + + EA ++ R++++AQ K + GG
Sbjct: 104 FFSGTHTKTDSSDVNRASLLYGRMYFPGTALEAMLIKRISASAQLLVKCINNPHIRKGGT 163
Query: 129 GLA-LQEDSEK 138
+ LQE++ +
Sbjct: 164 MIVYLQENTPR 174
>sp|Q7V843|LPXD_PROMM UDP-3-O-acylglucosamine N-acyltransferase OS=Prochlorococcus
marinus (strain MIT 9313) GN=lpxD PE=3 SV=1
Length = 347
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 163 AIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEA 213
A A+ +DP AF + LE L P S KAG H AV GD +I A
Sbjct: 81 AFAVLRDPRLAFAEALEQLHP--RSRPKAGVHPTAVIGDQVHLGQGISIGA 129
>sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2
Length = 1360
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 211 IEALCAKSYEDNSQKLKDIEAQILRK-RKELREFEIEYRKALARFQEATNRYSQEKQSVD 269
I+ C KSY N+ +L ++ ++++K ++ REFE + ++L F+E + E+ +VD
Sbjct: 1290 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFE-KMNQSLRLFREVC--LASERSTVD 1346
Query: 270 ELLKQRDAIHSSFTVTKTL 288
+A+H T+ K L
Sbjct: 1347 A-----EAVHKLLTLIKEL 1360
>sp|P49331|GTFD_STRMU Glucosyltransferase-S OS=Streptococcus mutans serotype c (strain
ATCC 700610 / UA159) GN=gtfD PE=3 SV=3
Length = 1462
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 45 KLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTI----NDQQAE 100
K+ I T L + +N V +P + S + H G + +D+ A
Sbjct: 329 KIETKISQTQQTQWLRDIINSFVKTQPNWNSQTESDTSAGEKDHLQGGALLYSNSDKTAY 388
Query: 101 AGIVVRV---TSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSA-GMYFLHFQVYR 156
A R+ T T+Q+ K YFE +++GGY L D + + V A + +LH+ +
Sbjct: 389 ANSDYRLLNRTPTSQTG-KPKYFEDNSSGGYDFLLANDIDNSNPVVQAEQLNWLHYLM-- 445
Query: 157 MDSTLNAIAIAKDPESAFFK-RLEGLQPCEVSELK-AGTHIFAVYG-DNFFKTATYTIEA 213
+I +A DPE+ F R++ + L+ A ++ A YG D K A +
Sbjct: 446 ---NYGSI-VANDPEANFDGVRVDAVDNVNADLLQIASDYLKAHYGVDKSEKNAINHLSI 501
Query: 214 LCAKSYEDNSQKLKDIEAQILRKRKELR 241
L A S +++ Q KD + L +LR
Sbjct: 502 LEAWS-DNDPQYNKDTKGAQLPIDNKLR 528
>sp|B1KLT8|TIG_SHEWM Trigger factor OS=Shewanella woodyi (strain ATCC 51908 / MS32)
GN=tig PE=3 SV=1
Length = 434
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 19/85 (22%)
Query: 26 EIDLSNLGTVNTMFAALFS---------------KLGVPIKTTISANVLEEALNGTVTVR 70
E+ +NL VN FA LF +G ++ + ANV E+ LNG +
Sbjct: 238 EVQAANLPEVNDEFATLFGVAEGGLEALKAEISKNMGRELEQALKANVKEQVLNGLLEQN 297
Query: 71 PLPIGTS-VSGKVE---KQCAHFFG 91
+ + S ++G+VE KQ FG
Sbjct: 298 EIELPASLIAGEVEVLRKQAMQRFG 322
>sp|Q62421|SH3G3_MOUSE Endophilin-A3 OS=Mus musculus GN=Sh3gl3 PE=2 SV=1
Length = 347
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 242 EFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFT--------VTKTLSTSSV 293
E ++E LA F EA Y ++ + + L+ + + S + K ++ SS
Sbjct: 206 ENDVEQVSQLAVFVEAALDYHRQSTEILQELQSKLELRISLASKVPKREFMPKPVNMSST 265
Query: 294 SGNNLSNGSSSKVPGEDSKGESPAEDGSSD 323
N + SSSK PG D+ + P G D
Sbjct: 266 DANGVGPSSSSKTPGTDTPADQPCCRGLYD 295
>sp|B9LEM3|RRF_CHLSY Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=frr PE=3 SV=1
Length = 185
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 138 KTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKA 191
+TG+ +SA + LH + Y M LN +A PE RL +QP + + +KA
Sbjct: 28 RTGRASSALVEHLHVEAYGMTMPLNQLANISVPEP----RLIVIQPYDANMIKA 77
>sp|A9WAG2|RRF_CHLAA Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=frr PE=3 SV=1
Length = 185
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 138 KTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKA 191
+TG+ +SA + LH + Y M LN +A PE RL +QP + + +KA
Sbjct: 28 RTGRASSALVEHLHVEAYGMTMPLNQLANISVPEP----RLIVIQPYDANMIKA 77
>sp|P35992|PTP10_DROME Tyrosine-protein phosphatase 10D OS=Drosophila melanogaster
GN=Ptp10D PE=1 SV=3
Length = 1631
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 50 IKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTS 109
I T+S V G VT+RPLP+ S IND + I+
Sbjct: 384 IVKTVSGKVTSWPATGDVTLRPLPVRNLRS--------------INDDKTNTMIITWEAD 429
Query: 110 TA--QSKFKLLYFEQDTNGGYGLALQEDSEK--TGKVTSAGMYFLHFQVY--RMDSTLNA 163
A Q +++++Y E +T G L D + + Y L Q +M+S +
Sbjct: 430 PASTQDEYRIVYHELETFNGDTSTLTTDRTRFTLESLLPGRNYSLSVQAVSKKMESNETS 489
Query: 164 IAIAKDPESAFFKRLEGLQ 182
I + P S + L+ ++
Sbjct: 490 IFVVTRPSSPIIEDLKSIR 508
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,062,729
Number of Sequences: 539616
Number of extensions: 4684871
Number of successful extensions: 17248
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 17041
Number of HSP's gapped (non-prelim): 297
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)