Query 019080
Match_columns 346
No_of_seqs 47 out of 49
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0713 Molecular chaperone (D 100.0 2.4E-39 5.2E-44 313.3 2.8 245 8-289 76-321 (336)
2 KOG1690 emp24/gp25L/p24 family 90.5 1.6 3.5E-05 41.5 8.7 29 185-213 93-123 (215)
3 COG1422 Predicted membrane pro 82.6 2.7 5.8E-05 39.8 5.4 39 231-269 72-111 (201)
4 PF03961 DUF342: Protein of un 69.9 63 0.0014 33.0 11.6 99 187-285 280-408 (451)
5 KOG1962 B-cell receptor-associ 58.7 40 0.00088 32.3 7.3 60 223-282 150-209 (216)
6 PF05546 She9_MDM33: She9 / Md 58.4 47 0.001 31.8 7.6 52 224-275 32-83 (207)
7 PF13094 CENP-Q: CENP-Q, a CEN 55.9 79 0.0017 27.8 8.3 63 219-281 22-84 (160)
8 PF13711 DUF4160: Domain of un 55.5 27 0.00058 26.7 4.6 46 193-241 17-62 (66)
9 PRK14143 heat shock protein Gr 55.3 69 0.0015 31.0 8.3 48 221-268 64-111 (238)
10 cd07651 F-BAR_PombeCdc15_like 54.6 76 0.0017 29.4 8.3 55 224-278 150-204 (236)
11 PF11418 Scaffolding_pro: Phi2 51.7 44 0.00095 28.4 5.6 68 218-285 6-73 (97)
12 PF10805 DUF2730: Protein of u 51.2 81 0.0018 26.5 7.2 54 222-275 47-102 (106)
13 PRK14139 heat shock protein Gr 50.3 88 0.0019 29.2 7.9 46 223-268 31-76 (185)
14 KOG2589 Histone tail methylase 50.1 14 0.0003 38.5 2.9 72 131-214 180-251 (453)
15 PRK14154 heat shock protein Gr 49.5 81 0.0017 30.1 7.7 44 225-268 53-96 (208)
16 PF12325 TMF_TATA_bd: TATA ele 48.3 86 0.0019 27.3 7.1 37 235-271 65-101 (120)
17 cd00890 Prefoldin Prefoldin is 48.2 98 0.0021 25.4 7.2 18 189-206 65-82 (129)
18 cd07655 F-BAR_PACSIN The F-BAR 47.7 98 0.0021 29.5 8.0 52 223-274 167-218 (258)
19 PRK14158 heat shock protein Gr 47.7 1.2E+02 0.0026 28.6 8.4 48 222-269 38-85 (194)
20 PHA00489 scaffolding protein 47.6 48 0.001 28.3 5.2 66 217-282 6-71 (101)
21 PF01105 EMP24_GP25L: emp24/gp 46.2 6.7 0.00014 33.1 0.0 65 189-253 70-141 (183)
22 PF08317 Spc7: Spc7 kinetochor 45.9 1.2E+02 0.0026 29.9 8.5 56 221-276 213-268 (325)
23 PF14453 ThiS-like: ThiS-like 45.5 16 0.00034 28.3 1.9 22 177-198 33-54 (57)
24 PRK14162 heat shock protein Gr 44.9 1.3E+02 0.0027 28.4 8.1 48 221-268 36-83 (194)
25 PRK14148 heat shock protein Gr 44.2 1.3E+02 0.0028 28.4 8.0 45 224-268 40-84 (195)
26 PF10498 IFT57: Intra-flagella 44.0 1.1E+02 0.0023 31.3 8.1 61 222-285 253-313 (359)
27 smart00787 Spc7 Spc7 kinetocho 44.0 1.3E+02 0.0028 30.0 8.5 56 221-276 208-263 (312)
28 PF01025 GrpE: GrpE; InterPro 43.7 25 0.00054 30.6 3.2 60 225-284 12-80 (165)
29 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.3 1.8E+02 0.004 24.9 8.1 43 222-264 15-57 (132)
30 PRK14160 heat shock protein Gr 40.7 1.6E+02 0.0035 28.1 8.3 46 223-268 60-105 (211)
31 PRK14140 heat shock protein Gr 40.5 1.6E+02 0.0035 27.6 8.1 47 222-268 35-81 (191)
32 PF01920 Prefoldin_2: Prefoldi 40.3 1E+02 0.0022 24.4 6.0 61 186-254 38-99 (106)
33 PRK14145 heat shock protein Gr 40.2 1.7E+02 0.0037 27.6 8.3 47 222-268 43-89 (196)
34 PF02183 HALZ: Homeobox associ 39.9 93 0.002 22.8 5.1 37 242-278 2-38 (45)
35 PF06103 DUF948: Bacterial pro 39.5 1.9E+02 0.0042 22.9 7.9 58 221-278 23-80 (90)
36 PRK05771 V-type ATP synthase s 38.9 2E+02 0.0043 30.8 9.5 39 221-259 212-250 (646)
37 PF05278 PEARLI-4: Arabidopsis 38.4 1.4E+02 0.0029 29.8 7.6 39 226-264 202-240 (269)
38 PRK14155 heat shock protein Gr 38.4 98 0.0021 29.4 6.4 42 226-267 15-56 (208)
39 PF03791 KNOX2: KNOX2 domain ; 37.7 1.2E+02 0.0026 23.2 5.5 27 238-264 9-35 (52)
40 PF02996 Prefoldin: Prefoldin 37.4 1.6E+02 0.0035 24.0 6.9 19 188-206 54-72 (120)
41 PF15030 DUF4527: Protein of u 36.6 2.3E+02 0.0049 28.3 8.7 63 221-283 13-75 (277)
42 PF04949 Transcrip_act: Transc 36.5 2.1E+02 0.0046 26.5 7.9 53 223-275 90-142 (159)
43 KOG0964 Structural maintenance 36.2 1.3E+02 0.0029 35.0 7.9 56 226-281 420-475 (1200)
44 TIGR00408 proS_fam_I prolyl-tR 36.1 49 0.0011 34.3 4.4 98 2-110 232-361 (472)
45 PHA02562 46 endonuclease subun 35.5 2.1E+02 0.0046 29.3 8.8 67 214-280 289-365 (562)
46 cd07647 F-BAR_PSTPIP The F-BAR 35.2 2.3E+02 0.005 26.5 8.4 53 224-276 153-205 (239)
47 PHA03161 hypothetical protein; 35.1 1.4E+02 0.0031 27.4 6.6 48 221-268 58-105 (150)
48 PRK14147 heat shock protein Gr 35.0 1.7E+02 0.0038 26.8 7.3 42 226-267 20-61 (172)
49 cd07681 F-BAR_PACSIN3 The F-BA 34.6 1.3E+02 0.0029 29.3 6.8 49 223-271 167-215 (258)
50 PRK08661 prolyl-tRNA synthetas 34.5 72 0.0016 33.1 5.3 103 2-114 237-371 (477)
51 PF09903 DUF2130: Uncharacteri 34.4 1.9E+02 0.0042 28.2 7.9 61 224-284 173-237 (267)
52 COG3883 Uncharacterized protei 34.1 2.5E+02 0.0054 27.9 8.6 62 221-282 42-106 (265)
53 PRK14151 heat shock protein Gr 34.1 2E+02 0.0042 26.6 7.5 46 222-267 18-63 (176)
54 PF05377 FlaC_arch: Flagella a 33.6 1.5E+02 0.0033 23.0 5.6 17 226-242 9-25 (55)
55 smart00721 BAR BAR domain. 33.3 92 0.002 27.9 5.2 37 239-278 171-207 (239)
56 PRK11637 AmiB activator; Provi 33.2 2.7E+02 0.0059 28.2 9.0 28 221-248 44-71 (428)
57 PRK14153 heat shock protein Gr 33.1 1.2E+02 0.0026 28.6 6.0 45 224-268 33-77 (194)
58 PRK14146 heat shock protein Gr 32.7 2.1E+02 0.0045 27.3 7.6 44 224-267 54-97 (215)
59 PRK14141 heat shock protein Gr 32.4 1.9E+02 0.004 27.6 7.2 40 228-267 35-74 (209)
60 PRK14144 heat shock protein Gr 32.2 1.9E+02 0.004 27.5 7.2 44 224-267 45-88 (199)
61 PRK10884 SH3 domain-containing 31.8 2.6E+02 0.0057 26.3 8.1 28 221-248 90-117 (206)
62 PRK14157 heat shock protein Gr 31.3 1.6E+02 0.0034 28.6 6.6 39 229-267 82-120 (227)
63 PF11559 ADIP: Afadin- and alp 31.3 2.7E+02 0.0058 24.1 7.6 49 223-271 72-120 (151)
64 PF04111 APG6: Autophagy prote 30.3 3.3E+02 0.0072 27.0 8.9 31 222-252 48-78 (314)
65 PF10211 Ax_dynein_light: Axon 30.1 3.9E+02 0.0084 24.6 8.8 48 233-280 122-169 (189)
66 PF08614 ATG16: Autophagy prot 30.0 3.4E+02 0.0073 24.7 8.3 51 223-273 129-179 (194)
67 PHA02562 46 endonuclease subun 29.8 2.4E+02 0.0052 28.9 8.1 58 222-282 172-236 (562)
68 COG1777 Predicted transcriptio 29.3 4.1E+02 0.0088 25.9 8.9 98 186-283 73-177 (217)
69 KOG0774 Transcription factor P 29.1 1.3E+02 0.0029 30.2 5.9 39 233-274 102-140 (334)
70 PRK14156 heat shock protein Gr 29.0 2.1E+02 0.0046 26.6 6.8 41 227-267 30-70 (177)
71 PF10146 zf-C4H2: Zinc finger- 29.0 3.8E+02 0.0083 25.8 8.8 50 225-274 54-103 (230)
72 PF01765 RRF: Ribosome recycli 28.9 4.2E+02 0.0091 23.6 9.8 61 214-277 82-162 (165)
73 PF07200 Mod_r: Modifier of ru 28.7 3.1E+02 0.0067 23.6 7.5 42 224-265 55-96 (150)
74 PF07888 CALCOCO1: Calcium bin 28.7 2.8E+02 0.0061 30.2 8.6 50 227-276 160-216 (546)
75 PF14347 DUF4399: Domain of un 28.5 42 0.00091 27.6 2.0 25 179-203 49-74 (87)
76 COG1579 Zn-ribbon protein, pos 28.3 2.9E+02 0.0063 27.0 7.9 56 222-280 115-170 (239)
77 COG3883 Uncharacterized protei 28.0 2.7E+02 0.0058 27.6 7.7 52 224-279 59-111 (265)
78 cd07672 F-BAR_PSTPIP2 The F-BA 28.0 3.4E+02 0.0075 25.9 8.3 46 223-268 153-198 (240)
79 PF08581 Tup_N: Tup N-terminal 27.8 3E+02 0.0065 22.5 6.8 41 224-264 32-72 (79)
80 TIGR01069 mutS2 MutS2 family p 27.7 2.7E+02 0.0059 31.1 8.5 13 114-126 402-414 (771)
81 PF05377 FlaC_arch: Flagella a 27.3 2E+02 0.0044 22.3 5.4 23 226-248 2-24 (55)
82 COG4026 Uncharacterized protei 27.3 3.1E+02 0.0067 27.3 7.9 30 245-274 128-157 (290)
83 PF10368 YkyA: Putative cell-w 27.2 2E+02 0.0043 27.0 6.4 46 239-284 90-136 (204)
84 KOG1850 Myosin-like coiled-coi 26.6 2.4E+02 0.0052 29.2 7.2 61 223-284 115-175 (391)
85 PF12777 MT: Microtubule-bindi 26.3 3.4E+02 0.0073 27.0 8.2 38 222-259 226-263 (344)
86 PF07820 TraC: TraC-like prote 26.3 3E+02 0.0064 23.5 6.6 20 226-245 4-23 (92)
87 PF00647 EF1G: Elongation fact 26.2 51 0.0011 28.5 2.2 54 152-216 49-102 (107)
88 PF03112 DUF244: Uncharacteriz 25.9 78 0.0017 29.2 3.4 52 217-282 62-115 (158)
89 PRK00409 recombination and DNA 25.9 3.3E+02 0.0072 30.4 8.8 24 30-53 335-363 (782)
90 PF12777 MT: Microtubule-bindi 25.7 2.8E+02 0.006 27.6 7.5 45 220-264 4-48 (344)
91 cd07671 F-BAR_PSTPIP1 The F-BA 25.4 4E+02 0.0087 25.5 8.2 49 224-272 153-201 (242)
92 PF13863 DUF4200: Domain of un 25.4 3.9E+02 0.0084 22.1 8.5 20 226-245 9-28 (126)
93 PF04888 SseC: Secretion syste 25.3 4.5E+02 0.0097 25.3 8.7 64 222-285 242-305 (306)
94 PF06148 COG2: COG (conserved 25.1 1E+02 0.0022 26.3 3.8 55 219-280 57-111 (133)
95 KOG0239 Kinesin (KAR3 subfamil 25.1 3.2E+02 0.007 30.2 8.4 60 225-284 249-311 (670)
96 PF10146 zf-C4H2: Zinc finger- 25.0 3.8E+02 0.0083 25.8 8.0 28 230-257 73-100 (230)
97 PRK10884 SH3 domain-containing 24.9 2.3E+02 0.0051 26.7 6.5 29 221-249 97-125 (206)
98 KOG0964 Structural maintenance 24.8 2.3E+02 0.0051 33.2 7.4 52 222-273 326-377 (1200)
99 PF07106 TBPIP: Tat binding pr 24.6 4.9E+02 0.011 23.0 8.5 70 176-260 37-108 (169)
100 PRK09039 hypothetical protein; 24.5 4.2E+02 0.0092 26.6 8.6 58 225-282 145-203 (343)
101 PF08053 Tna_leader: Tryptopha 24.4 29 0.00062 22.6 0.3 10 331-340 10-19 (24)
102 PF04111 APG6: Autophagy prote 24.4 5.2E+02 0.011 25.7 9.1 24 224-247 64-87 (314)
103 PRK14161 heat shock protein Gr 24.3 3.6E+02 0.0078 24.9 7.5 41 228-268 23-63 (178)
104 PF14523 Syntaxin_2: Syntaxin- 24.2 3.1E+02 0.0067 21.7 6.3 32 234-265 67-98 (102)
105 PF05852 DUF848: Gammaherpesvi 24.1 3.2E+02 0.0069 25.0 6.9 24 222-245 59-82 (146)
106 PF09554 RE_HaeII: HaeII restr 23.9 51 0.0011 33.2 2.0 62 37-103 157-221 (338)
107 PF13851 GAS: Growth-arrest sp 23.8 6E+02 0.013 23.7 8.9 20 244-263 120-139 (201)
108 PF10481 CENP-F_N: Cenp-F N-te 23.7 3.1E+02 0.0067 27.8 7.3 63 221-283 15-91 (307)
109 COG3352 FlaC Putative archaeal 23.7 3.5E+02 0.0076 25.1 7.1 33 229-261 70-102 (157)
110 smart00503 SynN Syntaxin N-ter 23.6 3.3E+02 0.0072 21.7 6.4 29 235-263 86-114 (117)
111 PRK13452 atpC F0F1 ATP synthas 23.5 3.9E+02 0.0084 23.8 7.3 37 226-262 92-131 (145)
112 PF15079 DUF4546: Domain of un 23.5 3.2E+02 0.007 26.0 7.0 39 221-259 51-89 (205)
113 PF11594 Med28: Mediator compl 23.4 2.9E+02 0.0063 24.0 6.2 48 222-274 13-60 (106)
114 cd00214 Calpain_III Calpain, s 23.4 2.3E+02 0.005 24.5 5.8 33 128-160 50-82 (150)
115 PF09866 DUF2093: Uncharacteri 23.3 48 0.001 24.5 1.3 10 189-198 2-11 (42)
116 PF05278 PEARLI-4: Arabidopsis 23.2 4.8E+02 0.01 26.1 8.4 62 222-283 191-252 (269)
117 PF13851 GAS: Growth-arrest sp 23.1 5E+02 0.011 24.2 8.2 62 224-285 62-133 (201)
118 PF08939 DUF1917: Domain of un 23.0 52 0.0011 31.8 1.8 18 189-206 192-209 (243)
119 PF09728 Taxilin: Myosin-like 22.9 2.5E+02 0.0054 27.9 6.6 55 222-276 112-166 (309)
120 COG5200 LUC7 U1 snRNP componen 22.5 5.2E+02 0.011 25.5 8.3 77 205-283 93-171 (258)
121 KOG4405 GDP dissociation inhib 22.2 49 0.0011 35.3 1.6 27 198-239 42-68 (547)
122 cd07680 F-BAR_PACSIN1 The F-BA 22.2 4.9E+02 0.011 25.4 8.3 51 222-272 166-216 (258)
123 PRK14163 heat shock protein Gr 22.1 4.5E+02 0.0098 25.2 7.8 42 226-267 42-83 (214)
124 PRK09806 tryptophanase leader 21.9 34 0.00074 22.6 0.3 10 331-340 10-19 (26)
125 COG4026 Uncharacterized protei 21.7 3.9E+02 0.0084 26.6 7.4 53 220-276 138-190 (290)
126 TIGR00409 proS_fam_II prolyl-t 21.6 1.3E+02 0.0029 32.1 4.7 45 3-55 423-472 (568)
127 PF02388 FemAB: FemAB family; 21.5 4.9E+02 0.011 26.5 8.4 51 226-276 244-300 (406)
128 PRK04778 septation ring format 21.1 2.6E+02 0.0056 29.7 6.6 54 224-277 348-401 (569)
129 PF06295 DUF1043: Protein of u 20.7 5E+02 0.011 22.5 7.2 23 224-246 25-47 (128)
130 COG1579 Zn-ribbon protein, pos 20.6 3.4E+02 0.0074 26.5 6.8 36 224-259 10-45 (239)
131 PRK09039 hypothetical protein; 20.6 5.7E+02 0.012 25.6 8.6 65 218-282 131-195 (343)
132 cd07307 BAR The Bin/Amphiphysi 20.5 4.9E+02 0.011 21.5 7.7 34 239-275 129-162 (194)
133 cd07664 BAR_SNX2 The Bin/Amphi 20.5 5.2E+02 0.011 24.7 8.0 46 221-266 130-187 (234)
134 KOG0288 WD40 repeat protein Ti 20.4 4.6E+02 0.01 28.0 8.0 35 222-256 18-52 (459)
135 COG2098 Uncharacterized protei 20.3 86 0.0019 27.6 2.4 72 39-111 22-96 (116)
136 cd07657 F-BAR_Fes_Fer The F-BA 20.2 4.3E+02 0.0093 25.2 7.3 36 226-261 114-149 (237)
137 TIGR03510 XapX XapX domain. Th 20.2 85 0.0018 23.8 2.1 18 35-52 8-25 (49)
138 PRK11677 hypothetical protein; 20.1 5.1E+02 0.011 23.1 7.3 46 223-268 28-77 (134)
139 KOG1962 B-cell receptor-associ 20.1 3.3E+02 0.0072 26.3 6.5 45 220-264 154-198 (216)
No 1
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-39 Score=313.33 Aligned_cols=245 Identities=26% Similarity=0.315 Sum_probs=225.8
Q ss_pred ccccccCccccccccceeEEcccCcchh-HHHHHHHHHhcCCCccccccHHHHHHHHCCCceeeecCCcceeecceeccc
Q 019080 8 SIFNYKSFQAIDAEGMDMEIDLSNLGTV-NTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQC 86 (346)
Q Consensus 8 ~~~d~~g~~a~~~~~~d~EiDlSelGtv-~r~f~ALFskLGVPIkT~Is~kVLeeA~nG~v~v~~L~~G~~v~~kVeKQ~ 86 (346)
++||..|.++++.++.+++ +|.. +++|+|+|+++|| +|+++++++| +|.|..|+..+++|+
T Consensus 76 k~YD~~GEegL~~~~~~~~-----~g~~~~~~f~~~f~dfg~----~~~g~~~~e~---------~~~g~~V~~~~e~~~ 137 (336)
T KOG0713|consen 76 KHYDTYGEEGLKDENKDGE-----GGGGGNDIFSAFFGDFGV----TVGGNPLEEA---------LPKGSDVSSDLEKQL 137 (336)
T ss_pred HHHHhhhHhhhcccccccc-----cCCcccchHHHhhccccc----ccCCCcccCC---------CCCCceEEeehhhch
Confidence 5899999999999986666 4444 6999999999999 8999999998 889999999999999
Q ss_pred eeEEEEEechhhhccceEEEEEeCCCCceEEEEeeccCCCcceeEEeeeccccCcceeeeeeeeceeeeeecccchhhhh
Q 019080 87 AHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAI 166 (346)
Q Consensus 87 AhFf~I~itee~~~~GvVi~c~S~~~SKFKLl~FD~e~~Gg~~l~lqeeS~K~~k~T~A~myFlpf~vy~l~~~~n~~~~ 166 (346)
+|||.++++++++.+||++.|+++.+++||+++|++++++|+...||+..-++.+. ..++.
T Consensus 138 ~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~-------------------~k~~~ 198 (336)
T KOG0713|consen 138 EHFYMGNFVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPN-------------------VKLVL 198 (336)
T ss_pred hhhhcccHHHHHhccCceeecCcccccCChhhheeeccCCChhhhhhhhhhccCCc-------------------cceee
Confidence 99999999999999999999999999999999999999888777788766666655 33444
Q ss_pred cCCCchhhhhhhcccCccceeeccCCceEEEEecCcccccceEEEEEEeccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019080 167 AKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIE 246 (346)
Q Consensus 167 ~kd~~~afF~~Ld~~q~~e~~~L~pG~Hlf~VYGDNwfk~a~ytie~l~~~~~~~~~~~I~~vE~~l~~KK~EL~~Fe~E 246 (346)
.+++...+|++|+.++++++..++.+.|++||||||||+.+.|++..++..++....+.+.++|++|+.++.||..|+.|
T Consensus 199 e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~ 278 (336)
T KOG0713|consen 199 EEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGH 278 (336)
T ss_pred cCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchh
Confidence 67888999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhccccccc
Q 019080 247 YRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLS 289 (346)
Q Consensus 247 Y~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~~~~~ 289 (346)
|++|++++.++.+++..+.+++..+|+.|+++++.|++..+..
T Consensus 279 ~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 321 (336)
T KOG0713|consen 279 YVEVSRKKITWPGARTRKKGEGMPLLKNRNEKGNLYVTFDVEF 321 (336)
T ss_pred hhhhhhhhccccchhhhhhhccchhhhccchhcceeEEecccC
Confidence 9999999999999999999999999999999999998876554
No 2
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.55 E-value=1.6 Score=41.51 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=23.8
Q ss_pred ceeeccCCceEEEEec--CcccccceEEEEE
Q 019080 185 EVSELKAGTHIFAVYG--DNFFKTATYTIEA 213 (346)
Q Consensus 185 e~~~L~pG~Hlf~VYG--DNwfk~a~ytie~ 213 (346)
+-+.+.||+|-||+|- ++||..++-.+.+
T Consensus 93 tFta~~~GeH~IC~~s~s~awf~~aklRvhl 123 (215)
T KOG1690|consen 93 TFTALTPGEHRICIQSNSTAWFNGAKLRVHL 123 (215)
T ss_pred EEEccCCCceEEEEecccchhhccceEEEEE
Confidence 3377889999999984 4999999877665
No 3
>COG1422 Predicted membrane protein [Function unknown]
Probab=82.56 E-value=2.7 Score=39.84 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHH
Q 019080 231 AQILRKRKELREFEIEYRKALA-RFQEATNRYSQEKQSVD 269 (346)
Q Consensus 231 ~~l~~KK~EL~~Fe~EY~eak~-kf~ev~~r~~~e~~~id 269 (346)
+.|.+.|++++.||+||+||++ ..+++++|.+++..++-
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~ 111 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMM 111 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4678889999999999999987 47779999999875553
No 4
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=69.95 E-value=63 Score=33.02 Aligned_cols=99 Identities=16% Similarity=0.293 Sum_probs=61.0
Q ss_pred eeccCCceEEE------EecCcccccceEEEEEE----------ecc-ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 187 SELKAGTHIFA------VYGDNFFKTATYTIEAL----------CAK-SYEDNSQKLKDIEAQILRKRKELREFEIEYRK 249 (346)
Q Consensus 187 ~~L~pG~Hlf~------VYGDNwfk~a~ytie~l----------~~~-~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~e 249 (346)
+.|.++.|+++ +.|-+.+-........+ .+. ......+++++++.++...+++|.+++.....
T Consensus 280 s~v~a~~~i~v~~~~g~IiGG~i~a~~~i~a~~lGs~~~~~T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~ 359 (451)
T PF03961_consen 280 SKVKAGGSIIVNGGKGRIIGGEIKAGNGIEAKSLGSEAGTKTEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLKK 359 (451)
T ss_pred hheecCCeEEEeCCCCEEECcEEEEcccEEEEeecccccccEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888887 44444332222222212 111 22455666777888888888777777776533
Q ss_pred H-------------HHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhccc
Q 019080 250 A-------------LARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 285 (346)
Q Consensus 250 a-------------k~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~ 285 (346)
. ++.+..+...+.+..+.+.+|..++.++.+++...
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 360 LKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred hhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 34666677777777777888887777777776554
No 5
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.66 E-value=40 Score=32.35 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhh
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 282 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~ 282 (346)
.++.....+.+...++|+++-++++..+.++.+++......-..+.|-||..=+...++.
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777777777777777777777777888886655554444
No 6
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=58.41 E-value=47 Score=31.79 Aligned_cols=52 Identities=25% Similarity=0.414 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR 275 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~R 275 (346)
..|..+..++...=.+|.....+=++|++.|..++.+-..-.-+|++||...
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666666666666677777777788888888888888888899999763
No 7
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=55.85 E-value=79 Score=27.76 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=53.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhh
Q 019080 219 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSS 281 (346)
Q Consensus 219 ~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s 281 (346)
+....+..+..|.+|..-.+.|..++.|+....+.++.....+.+....+..+-++|++--..
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677788999999999999999999999999999999999988888888888887554433
No 8
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=55.45 E-value=27 Score=26.69 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=33.1
Q ss_pred ceEEEEecCcccccceEEEEEEeccccchhhhhHHHHHHHHHHHHHHHH
Q 019080 193 THIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELR 241 (346)
Q Consensus 193 ~Hlf~VYGDNwfk~a~ytie~l~~~~~~~~~~~I~~vE~~l~~KK~EL~ 241 (346)
-|+-+.||| ..|+|.|.-+..-...=-..+++.|++=+..-+++|.
T Consensus 17 pHvHv~~g~---~~a~i~l~~l~~~~G~l~~k~l~~i~~~i~~~~~~l~ 62 (66)
T PF13711_consen 17 PHVHVRYGG---FEAKIWLEPLEVNEGFLPRKELRKILEWIEENQEELL 62 (66)
T ss_pred CeEEEEcCC---cEEEEEecchHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 499999999 7888888875543332234568888888887777775
No 9
>PRK14143 heat shock protein GrpE; Provisional
Probab=55.32 E-value=69 Score=30.95 Aligned_cols=48 Identities=27% Similarity=0.504 Sum_probs=41.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
+....+..++++|...+.|+..++..|+-+++-|+-.-.|..+|.+.+
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~ 111 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDL 111 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568889999999999999999999999999999999998886543
No 10
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=54.56 E-value=76 Score=29.45 Aligned_cols=55 Identities=11% Similarity=0.244 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHh
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 278 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~i 278 (346)
.++.+.+..+...+.+++..+.+|..+...+.....+|.+++..+=..+-.=|+-
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~ 204 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEE 204 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999987776665544443
No 11
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=51.74 E-value=44 Score=28.40 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=55.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhccc
Q 019080 218 SYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 285 (346)
Q Consensus 218 ~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~ 285 (346)
.+.+..++|-.-|..-..+-+-|.+++.-|......|.+++.-..+-+.+-++|+..-.+++...+..
T Consensus 6 e~ed~LnkL~npEl~~sErTeaLqqlr~~~~sf~sEy~dlT~~~eKl~aek~DL~vsNskLFrQ~~lt 73 (97)
T PF11418_consen 6 EHEDILNKLGNPELTESERTEALQQLRESYTSFHSEYEDLTEALEKLTAEKEDLIVSNSKLFRQHGLT 73 (97)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhCCC
Confidence 44566778888888888888999999999999999999999988887777899999999988666544
No 12
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=51.23 E-value=81 Score=26.50 Aligned_cols=54 Identities=17% Similarity=0.396 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q 019080 222 NSQKLKDIEAQILRK--RKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR 275 (346)
Q Consensus 222 ~~~~I~~vE~~l~~K--K~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~R 275 (346)
..+.++.+|.++... +.++.+++-+..++.....++-.++..-..-++-||..+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~ 102 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENE 102 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999998 999999999999999999999999988877777777654
No 13
>PRK14139 heat shock protein GrpE; Provisional
Probab=50.32 E-value=88 Score=29.20 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
...+..++++|...++|+..++..|.-+++-|+-...|..+|.+.+
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~ 76 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKA 76 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888999999999999999999999999998887554
No 14
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=50.13 E-value=14 Score=38.46 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=44.7
Q ss_pred EEeeeccccCcceeeeeeeeceeeeeecccchhhhhcCCCchhhhhhhcccCccceeeccCCceEEEEecCcccccceEE
Q 019080 131 ALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYT 210 (346)
Q Consensus 131 ~lqeeS~K~~k~T~A~myFlpf~vy~l~~~~n~~~~~kd~~~afF~~Ld~~q~~e~~~L~pG~Hlf~VYGDNwfk~a~yt 210 (346)
+++-.++|. .|-++.=|--..|.|=..|+--.+-+.+.+- ..-..-|+||+-|=|.||+|||-.-|-.
T Consensus 180 SvmyStRk~----caqLwLGPaafINHDCrpnCkFvs~g~~tac--------vkvlRDIePGeEITcFYgs~fFG~~N~~ 247 (453)
T KOG2589|consen 180 SVMYSTRKR----CAQLWLGPAAFINHDCRPNCKFVSTGRDTAC--------VKVLRDIEPGEEITCFYGSGFFGENNEE 247 (453)
T ss_pred eeeeecccc----hhhheeccHHhhcCCCCCCceeecCCCceee--------eehhhcCCCCceeEEeecccccCCCCce
Confidence 444444443 3445554544444444445554444555555 3334669999999999999999988866
Q ss_pred EEEE
Q 019080 211 IEAL 214 (346)
Q Consensus 211 ie~l 214 (346)
-+|.
T Consensus 248 CeC~ 251 (453)
T KOG2589|consen 248 CECV 251 (453)
T ss_pred eEEe
Confidence 5554
No 15
>PRK14154 heat shock protein GrpE; Provisional
Probab=49.50 E-value=81 Score=30.05 Aligned_cols=44 Identities=23% Similarity=0.466 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 225 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 225 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
.+..++++|...++++..++..|.-+++-|+-.-.|..+|.+.+
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777788888888888888888888888877776543
No 16
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.30 E-value=86 Score=27.35 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 019080 235 RKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 271 (346)
Q Consensus 235 ~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideL 271 (346)
....++..++.++.+...+|+.+..=|++..+.+++|
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3334444455566666666666666666666666655
No 17
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.15 E-value=98 Score=25.42 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=11.4
Q ss_pred ccCCceEEEEecCccccc
Q 019080 189 LKAGTHIFAVYGDNFFKT 206 (346)
Q Consensus 189 L~pG~Hlf~VYGDNwfk~ 206 (346)
|.+.++++---|.|||-.
T Consensus 65 i~~~~~v~v~iG~~~~ve 82 (129)
T cd00890 65 VKDDDKVLVDLGTGVYVE 82 (129)
T ss_pred ECCCCEEEEEecCCEEEE
Confidence 446667777777766643
No 18
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=47.71 E-value=98 Score=29.48 Aligned_cols=52 Identities=17% Similarity=0.368 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 274 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~ 274 (346)
..+|.+++.++.....++.+-+.+|..+.....+...+|.+++..+=+.+-.
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~ 218 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQE 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999889999988777655543
No 19
>PRK14158 heat shock protein GrpE; Provisional
Probab=47.69 E-value=1.2e+02 Score=28.56 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=41.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 269 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~id 269 (346)
..+.+..+|.+|...+.|+..++..|.-+++-|+-.-.|..+|.+.+.
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~ 85 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL 85 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999999999999999888876543
No 20
>PHA00489 scaffolding protein
Probab=47.57 E-value=48 Score=28.33 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=54.3
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhh
Q 019080 217 KSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 282 (346)
Q Consensus 217 ~~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~ 282 (346)
+.+.+..++|-+-|..-..+-+-|.+++.-|......|.++|.-+.+-+.+-++|+..-.+++..+
T Consensus 6 eehe~iLnkL~dpEl~~sErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLFrql 71 (101)
T PHA00489 6 EEHEAILNKLGDPELTESERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLFRQL 71 (101)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHc
Confidence 455667788888888888888899999999999999999988877777777788888888887443
No 21
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=46.23 E-value=6.7 Score=33.10 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred ccCCceEEEEecCcccc----cceEEEEEEecc---ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 189 LKAGTHIFAVYGDNFFK----TATYTIEALCAK---SYEDNSQKLKDIEAQILRKRKELREFEIEYRKALAR 253 (346)
Q Consensus 189 L~pG~Hlf~VYGDNwfk----~a~ytie~l~~~---~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~k 253 (346)
-++|+|-||+.+..+-. .+++.|..-... ......+.+..+|.+|......|+..+.|....+.+
T Consensus 70 ~~~G~y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r 141 (183)
T PF01105_consen 70 KESGEYQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLRER 141 (183)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccCCCEEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999998873 444444442211 112345557777777777777776666665444433
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.88 E-value=1.2e+02 Score=29.90 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=43.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRD 276 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re 276 (346)
...++|.+.+.+|..+|.++...+.+-.+...+.++...+-.+-..+|.++=+.|+
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888899999999999998888888888877776666666666555544
No 23
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=45.53 E-value=16 Score=28.35 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.4
Q ss_pred hhcccCccceeeccCCceEEEE
Q 019080 177 RLEGLQPCEVSELKAGTHIFAV 198 (346)
Q Consensus 177 ~Ld~~q~~e~~~L~pG~Hlf~V 198 (346)
=|.+|+..+-..|++|++|||+
T Consensus 33 I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 33 ILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred EEcCcccCCccccCCCCEEEEE
Confidence 4899999999999999999997
No 24
>PRK14162 heat shock protein GrpE; Provisional
Probab=44.92 E-value=1.3e+02 Score=28.39 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
+..+.+..++.+|...+.++..++..|.-+++-|+-.-.|+.+|.+.+
T Consensus 36 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~ 83 (194)
T PRK14162 36 EKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQL 83 (194)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668888889999999999999999999999999999998886543
No 25
>PRK14148 heat shock protein GrpE; Provisional
Probab=44.16 E-value=1.3e+02 Score=28.37 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
..+..++.+|...++++..++..|.-+++-|+-...|..+|...+
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~ 84 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNA 84 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888889999999999999999999999999999998886543
No 26
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.02 E-value=1.1e+02 Score=31.26 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhccc
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 285 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~ 285 (346)
..++|..=|..|-+ .|...-.||+.++.+..++..+|.+-.+.|.++..+=.+|-.++-..
T Consensus 253 ~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 253 TLEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred HHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 45555668999999999988888888777777776666666655443
No 27
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.95 E-value=1.3e+02 Score=30.03 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=44.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRD 276 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re 276 (346)
...++|.++..+|..+|+++..++.+-.+...+-++.+++-.+-..+|.++=+.|+
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999998888888887776666666666544443
No 28
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=43.73 E-value=25 Score=30.60 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---------HHHHHHHhHHHhhhhhcc
Q 019080 225 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQ---------SVDELLKQRDAIHSSFTV 284 (346)
Q Consensus 225 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~---------~ideLL~~Re~iy~s~~~ 284 (346)
++..++.+|...++++.+++..|....+.++....|..++.+ -+.+||.-.+.+...+-.
T Consensus 12 ~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~ 80 (165)
T PF01025_consen 12 EIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEA 80 (165)
T ss_dssp HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455555555555555555554444444432 244566655555444433
No 29
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.26 E-value=1.8e+02 Score=24.93 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQE 264 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e 264 (346)
..+.+...+.++...|.+|..-...+++|..+|+.=+.++..-
T Consensus 15 ~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~ 57 (132)
T PF07926_consen 15 LKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED 57 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456788888999999999999999999999999866666665
No 30
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.73 E-value=1.6e+02 Score=28.08 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
.+.+..+++++...++++..++..|+-+++-|+-.-.|..+|.+.+
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888999999999999999888888886553
No 31
>PRK14140 heat shock protein GrpE; Provisional
Probab=40.48 E-value=1.6e+02 Score=27.60 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
..+.|.+.+.+|...++|+..++..|.-+++-|+-.-.|..+|.+.+
T Consensus 35 ~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~ 81 (191)
T PRK14140 35 EAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAA 81 (191)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888889999999999999999999999888888886543
No 32
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.29 E-value=1e+02 Score=24.39 Aligned_cols=61 Identities=16% Similarity=0.375 Sum_probs=33.1
Q ss_pred eeeccCCceEEEEecCcccccceEEEEEEecc-ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 186 VSELKAGTHIFAVYGDNFFKTATYTIEALCAK-SYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARF 254 (346)
Q Consensus 186 ~~~L~pG~Hlf~VYGDNwfk~a~ytie~l~~~-~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf 254 (346)
...+.++..++.-.|+=|+.. ..+ .-....+++..++..|...++++...+.++.+.++..
T Consensus 38 L~~l~~~~~~y~~vG~~fv~~--------~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 38 LEKLDDDRKVYKSVGKMFVKQ--------DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHTSSTT-EEEEEETTEEEEE--------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcchhHHHHhHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788998889876543 111 1122334455555555555555555555555554443
No 33
>PRK14145 heat shock protein GrpE; Provisional
Probab=40.16 E-value=1.7e+02 Score=27.60 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
....+..++++|...++++..++.-|+-+++-|+-.-.|..+|.+.+
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~ 89 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEM 89 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888999999999999999999999999999998886543
No 34
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.91 E-value=93 Score=22.84 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHh
Q 019080 242 EFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 278 (346)
Q Consensus 242 ~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~i 278 (346)
+.|.+|.-.++.|+.....|..-..+.+.|.++-...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999988888888877765544
No 35
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.48 E-value=1.9e+02 Score=22.90 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=48.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHh
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 278 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~i 278 (346)
+....++++++.+..-.+++.....|-.+....-.+++++.....+.++.+...=.++
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456688889999999999999999999999999999999998888888887765444
No 36
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=38.90 E-value=2e+02 Score=30.84 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=27.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATN 259 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 259 (346)
.-.+.|+++++++...++|+.+.+.|-++....+.....
T Consensus 212 ~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~ 250 (646)
T PRK05771 212 TPSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888888888888887777776666655444
No 37
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.41 E-value=1.4e+02 Score=29.78 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019080 226 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQE 264 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e 264 (346)
|...+.+|....+||.+-|.|+.+++.+..++..|+.+-
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666666666666666665544
No 38
>PRK14155 heat shock protein GrpE; Provisional
Probab=38.35 E-value=98 Score=29.37 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 226 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
..+.+.+|...++|+..++..|.-+++-|+-.-.|..+|.+.
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 56 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMND 56 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777778888888888888888888888888877644
No 39
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=37.72 E-value=1.2e+02 Score=23.25 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019080 238 KELREFEIEYRKALARFQEATNRYSQE 264 (346)
Q Consensus 238 ~EL~~Fe~EY~eak~kf~ev~~r~~~e 264 (346)
-||++|=.-|-.++.+|++-..|--+|
T Consensus 9 pELDqFMeaYc~~L~kykeeL~~p~~E 35 (52)
T PF03791_consen 9 PELDQFMEAYCDMLVKYKEELQRPFQE 35 (52)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999988877665
No 40
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=37.42 E-value=1.6e+02 Score=23.99 Aligned_cols=19 Identities=5% Similarity=0.385 Sum_probs=11.1
Q ss_pred eccCCceEEEEecCccccc
Q 019080 188 ELKAGTHIFAVYGDNFFKT 206 (346)
Q Consensus 188 ~L~pG~Hlf~VYGDNwfk~ 206 (346)
.|.+.++++-=-|.|||-.
T Consensus 54 ~i~~~~~vlV~lG~~~~vE 72 (120)
T PF02996_consen 54 KIPDTDKVLVSLGAGYYVE 72 (120)
T ss_dssp E-SSTTEEEEEEETTEEEE
T ss_pred EeCCCCEEEEEeeCCeEEE
Confidence 3455566666667776643
No 41
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=36.59 E-value=2.3e+02 Score=28.28 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=55.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhc
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFT 283 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~ 283 (346)
+..-.++..-.|+++.+-.|+.--.-+||.++..+|++.-..+-+..+++|.+++.++--..+
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVt 75 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVT 75 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccc
Confidence 455568999999999999999999999999999999999999999999999999988765544
No 42
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=36.46 E-value=2.1e+02 Score=26.50 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR 275 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~R 275 (346)
..+|..+-.+|..-+.--.+=+.||.+|+..|.+....=.+.....-+|+.+=
T Consensus 90 RkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eS 142 (159)
T PF04949_consen 90 RKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSES 142 (159)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777788899999999999998776666655556665543
No 43
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.23 E-value=1.3e+02 Score=35.03 Aligned_cols=56 Identities=23% Similarity=0.434 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhh
Q 019080 226 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSS 281 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s 281 (346)
|.++|.++..+=+++++++..-.+.+.+-++.-..+...+++.++|+..|.+++-+
T Consensus 420 ~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 420 IEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777777777777777777777788888877766643
No 44
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=36.11 E-value=49 Score=34.32 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=51.6
Q ss_pred ccccccccccccCccccccccceeEEcccCcchhHHHHHHHHHh----cCCCcccccc----------------HHHHHH
Q 019080 2 SRHLDLSIFNYKSFQAIDAEGMDMEIDLSNLGTVNTMFAALFSK----LGVPIKTTIS----------------ANVLEE 61 (346)
Q Consensus 2 ~~~~~~~~~d~~g~~a~~~~~~d~EiDlSelGtv~r~f~ALFsk----LGVPIkT~Is----------------~kVLee 61 (346)
|+.+|++.-|..|-. .-+--..+|-..|++|||+-. -|.-+|..|+ ..+++.
T Consensus 232 sk~f~i~y~~~~g~~--------~~~h~~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~ 303 (472)
T TIGR00408 232 AKTFEIKFETPTGDK--------EYAYQTSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEA 303 (472)
T ss_pred cHhcCCEEECCCCCE--------EeeEEccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHH
Confidence 455666665655411 112235888778999999833 4444443322 235555
Q ss_pred HH--------CC-CceeeecCCcceeecce---eccceeEEEEEechhhhccceEEEEEeC
Q 019080 62 AL--------NG-TVTVRPLPIGTSVSGKV---EKQCAHFFGVTINDQQAEAGIVVRVTST 110 (346)
Q Consensus 62 A~--------nG-~v~v~~L~~G~~v~~kV---eKQ~AhFf~I~itee~~~~GvVi~c~S~ 110 (346)
|. .| .|.+.. . +.....+. ++..+. |.|.|+++++.+|.|...+-.
T Consensus 304 A~~l~~~Lr~~girv~lD~-r-~~s~gkk~k~Ae~~GvP-~~IiIG~~Ele~~~V~ik~rd 361 (472)
T TIGR00408 304 AREVRSRLKKAGFRVHIDD-R-DNRPGRKFYQWEIKGIP-LRIEVGPNDIEKNIAVISRRD 361 (472)
T ss_pred HHHHHHHHHHCCCEEEEEC-C-CCCHHHHHHHHHHCCCC-EEEEECcchhhCCeEEEEECC
Confidence 52 22 233321 1 11222233 223333 789999998888876655543
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.47 E-value=2.1e+02 Score=29.31 Aligned_cols=67 Identities=15% Similarity=0.381 Sum_probs=32.8
Q ss_pred EeccccchhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhh
Q 019080 214 LCAKSYEDNSQKLKDIEAQILRKRKELREFEIE----------YRKALARFQEATNRYSQEKQSVDELLKQRDAIHS 280 (346)
Q Consensus 214 l~~~~~~~~~~~I~~vE~~l~~KK~EL~~Fe~E----------Y~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~ 280 (346)
+|..+..+....+..++.++...+.++..++.. |.++..+..+.-.++.+.+..+..+...+..+-.
T Consensus 289 ~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ 365 (562)
T PHA02562 289 TCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKA 365 (562)
T ss_pred CCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444433455555555665555555555444 3444444444444444444455555555444433
No 46
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.22 E-value=2.3e+02 Score=26.49 Aligned_cols=53 Identities=8% Similarity=0.282 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRD 276 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re 276 (346)
.++.+++..+...+.++.+-+.+|+.+...+..+..+|.+++..+=+.+-.=|
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lE 205 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNME 205 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999887766664333
No 47
>PHA03161 hypothetical protein; Provisional
Probab=35.11 E-value=1.4e+02 Score=27.38 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=35.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
+....|..++..|..|++|+..+..-=+......++.+.|...-++++
T Consensus 58 ~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel 105 (150)
T PHA03161 58 SIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDI 105 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999888866666666666666655554333
No 48
>PRK14147 heat shock protein GrpE; Provisional
Probab=34.99 E-value=1.7e+02 Score=26.77 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 226 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
....+.+|...++|+..++..|.-+++-|+-.-.|..+|.+.
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~ 61 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQ 61 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667778888888888888888888888888888888654
No 49
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=34.57 E-value=1.3e+02 Score=29.34 Aligned_cols=49 Identities=18% Similarity=0.385 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 271 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideL 271 (346)
.++++++.+.+..-+.+..+-+.+|+++...-...+.+|..++..+=+.
T Consensus 167 ~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~ 215 (258)
T cd07681 167 QEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEI 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999988766443
No 50
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=34.48 E-value=72 Score=33.14 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=55.9
Q ss_pred ccccccccccccCccccccccceeEEcccCcchhHHHHHHHHHhcC----CCc-----cccc-----------cHHHHHH
Q 019080 2 SRHLDLSIFNYKSFQAIDAEGMDMEIDLSNLGTVNTMFAALFSKLG----VPI-----KTTI-----------SANVLEE 61 (346)
Q Consensus 2 ~~~~~~~~~d~~g~~a~~~~~~d~EiDlSelGtv~r~f~ALFskLG----VPI-----kT~I-----------s~kVLee 61 (346)
|+.+|++.-|..|-.- -+-| ..+|...|++|||+-..| .-+ |.+| ...+++.
T Consensus 237 s~~f~i~y~d~~g~~~----~v~~----~s~G~~~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~ 308 (477)
T PRK08661 237 AKAFDIKFQDKDGKLE----YVHQ----TSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEY 308 (477)
T ss_pred hHhcCCEEECCCCCEe----eeEE----ecccHHHHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHH
Confidence 4455666555544321 1222 378988999999996444 322 2322 3446665
Q ss_pred HH--------CC-Cceeee---cCCcceeecceeccceeEEEEEechhhhccceEEEEEeCCCCc
Q 019080 62 AL--------NG-TVTVRP---LPIGTSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSK 114 (346)
Q Consensus 62 A~--------nG-~v~v~~---L~~G~~v~~kVeKQ~AhFf~I~itee~~~~GvVi~c~S~~~SK 114 (346)
|. .| .|.+.. ..+|..+.. .++..+. |.|.|++.++.+|.|...+-..+.|
T Consensus 309 a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~-ae~~GvP-~~IiIG~~ele~~~V~ik~rdtgek 371 (477)
T PRK08661 309 AKELAEELKKAGIRVKLDDRSDKTPGWKFNE-WELKGVP-LRIEIGPRDLENNTVVLVRRDTLEK 371 (477)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHHHH-HHHCCCC-EEEEECcchhhcCeEEEEECCCCce
Confidence 52 22 344322 233333221 1233333 7899999999998877665544333
No 51
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=34.42 E-value=1.9e+02 Score=28.22 Aligned_cols=61 Identities=21% Similarity=0.374 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhcc
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKAL----ARFQEATNRYSQEKQSVDELLKQRDAIHSSFTV 284 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak----~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~ 284 (346)
.+++...+....|-.-|-.|+++++.-+ ..|+.+..++..+..+++.+.+.|++....++.
T Consensus 173 ~~~k~~~~~~~~k~~~l~~fe~~~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~~ 237 (267)
T PF09903_consen 173 AKYKKEQENKKEKMEDLYNFEEEFRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLLS 237 (267)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666677778888877655 457779999999999999999999999999874
No 52
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.09 E-value=2.5e+02 Score=27.90 Aligned_cols=62 Identities=11% Similarity=0.219 Sum_probs=41.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHhHHHhhhhh
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEA---TNRYSQEKQSVDELLKQRDAIHSSF 282 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev---~~r~~~e~~~ideLL~~Re~iy~s~ 282 (346)
+...+.++++.+|...=+++......-.+.+++.++. ..++.++-.++.+-|..|++++..=
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777666666666666666666666664 3466666666677788888887653
No 53
>PRK14151 heat shock protein GrpE; Provisional
Probab=34.06 E-value=2e+02 Score=26.58 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
+......++++|...++|+..++..|.-+.+-|+-.-.|..+|.+.
T Consensus 18 ~~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~ 63 (176)
T PRK14151 18 EAAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEK 63 (176)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777888888888888877777777643
No 54
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.65 E-value=1.5e+02 Score=23.00 Aligned_cols=17 Identities=41% Similarity=0.425 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019080 226 LKDIEAQILRKRKELRE 242 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~ 242 (346)
+-+++..|.+-|+|+++
T Consensus 9 ~~~~~~~i~tvk~en~~ 25 (55)
T PF05377_consen 9 LPRIESSINTVKKENEE 25 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 55
>smart00721 BAR BAR domain.
Probab=33.30 E-value=92 Score=27.85 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHh
Q 019080 239 ELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 278 (346)
Q Consensus 239 EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~i 278 (346)
+|.+.+.|+..|+..|++....+..++ -.|+..|...
T Consensus 171 kl~~~e~el~~ak~~fe~~~~~l~~~l---~~l~~~~~~~ 207 (239)
T smart00721 171 KLAKAEEELRKAKQEFEESNAQLVEEL---PQLVASRVDF 207 (239)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHh
Confidence 466688999999999999999988884 6667777663
No 56
>PRK11637 AmiB activator; Provisional
Probab=33.21 E-value=2.7e+02 Score=28.21 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYR 248 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~ 248 (346)
+..++|++++.+|..+..+|.+.+.+=.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444433
No 57
>PRK14153 heat shock protein GrpE; Provisional
Probab=33.12 E-value=1.2e+02 Score=28.56 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
+++...+.+|...++++..++..|.-+++-|+-.-.|..+|.+.+
T Consensus 33 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~ 77 (194)
T PRK14153 33 PEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEEN 77 (194)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777888888888888888888888888888888776543
No 58
>PRK14146 heat shock protein GrpE; Provisional
Probab=32.71 E-value=2.1e+02 Score=27.31 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
+.+...+++|...++++..++..|+-+++-|+-...|..+|.+.
T Consensus 54 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~ 97 (215)
T PRK14146 54 ETETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVS 97 (215)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778888889999999999999999999998888888654
No 59
>PRK14141 heat shock protein GrpE; Provisional
Probab=32.45 E-value=1.9e+02 Score=27.61 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 228 DIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 228 ~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
..|.+|...++|+..++..|.-+++-|+-.-.|..+|.+.
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~ 74 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVAD 74 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667777777777777777777777777777544
No 60
>PRK14144 heat shock protein GrpE; Provisional
Probab=32.22 E-value=1.9e+02 Score=27.48 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
..+..+++.|...+.|+..++..|.-+++-|+-.-.|..+|.+.
T Consensus 45 ~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~ 88 (199)
T PRK14144 45 PSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVAN 88 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888888888888888888888888887644
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.76 E-value=2.6e+02 Score=26.35 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=18.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYR 248 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~ 248 (346)
...+.|.++|.++..-+++|+....++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3556677777777777777776665544
No 62
>PRK14157 heat shock protein GrpE; Provisional
Probab=31.34 E-value=1.6e+02 Score=28.59 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 229 IEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 229 vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
.|++|...++|+..++..|+-+++.|+-.-.|..+|.+.
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~ 120 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDR 120 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666666666543
No 63
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.30 E-value=2.7e+02 Score=24.08 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 271 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideL 271 (346)
...+...+.++.....|+...+...+.+.++..........+++++..+
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666777777777777777777666666665555444
No 64
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.31 E-value=3.3e+02 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALA 252 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~ 252 (346)
..++|+.+|.+-....+||.++|.|..+..+
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~ 78 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQ 78 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666655544433
No 65
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.13 E-value=3.9e+02 Score=24.64 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhh
Q 019080 233 ILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHS 280 (346)
Q Consensus 233 l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~ 280 (346)
......++..+++|..+...+..+...++........+.+..+++.|.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~ 169 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQ 169 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555444444444444444444443
No 66
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.02 E-value=3.4e+02 Score=24.72 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLK 273 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~ 273 (346)
.++|++.+.+|..|.+-+..++-||....-.|..+-.|...-..+=++|+.
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777777777777777777776666666665555555553
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.82 E-value=2.4e+02 Score=28.93 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhh
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYR-------KALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 282 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~-------eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~ 282 (346)
..+.+++.++++...+.++...+.+.. +..+.....+..++++ +++++++++.+....
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e---~~~l~~~~~~l~~~l 236 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNK---YDELVEEAKTIKAEI 236 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 344455555555555555555444432 2222223233333333 566666555554443
No 68
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=29.26 E-value=4.1e+02 Score=25.86 Aligned_cols=98 Identities=12% Similarity=0.207 Sum_probs=67.0
Q ss_pred eeeccCCceEEEEecCcccccceEEEEEEecc----cc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 186 VSELKAGTHIFAVYGDNFFKTATYTIEALCAK----SY---EDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEAT 258 (346)
Q Consensus 186 ~~~L~pG~Hlf~VYGDNwfk~a~ytie~l~~~----~~---~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~ 258 (346)
.--|.-+.||+-.|+-|+|..-.|-++.=-.+ +. ....+.|-+.=+.++.+.+++..+....++..+++.+..
T Consensus 73 YY~Is~~~rleV~lsp~~f~~~~~~~~~~~l~~~r~~~~~~~~s~~~~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~ 152 (217)
T COG1777 73 YYMISRNLRLEVTLSPNFFGAERFDLEEDDLESERSEVSKLFKSPEGISELISRLLEINREIEELSRAQTELQKQLNELM 152 (217)
T ss_pred eeeccCCeEEEEEecCcccceeccCccccchhhhhcchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999998877776652110 10 012233555666777788888888888888899999988
Q ss_pred HhhhhhHHHHHHHHHhHHHhhhhhc
Q 019080 259 NRYSQEKQSVDELLKQRDAIHSSFT 283 (346)
Q Consensus 259 ~r~~~e~~~ideLL~~Re~iy~s~~ 283 (346)
.|.+.+-...+....+|.-.+-=.+
T Consensus 153 ~rik~~ied~~~~~~~~~vl~~l~~ 177 (217)
T COG1777 153 DRIKEEIEDKDGDMTERIVLEYLLK 177 (217)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHh
Confidence 8888886666665555554443333
No 69
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=29.14 E-value=1.3e+02 Score=30.24 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 019080 233 ILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 274 (346)
Q Consensus 233 l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~ 274 (346)
-...|..|.+...+|..-+++|+++++.|+.- |..||.+
T Consensus 102 hsdYR~kL~qiR~iy~~ElekyeqaCneftth---V~nlL~e 140 (334)
T KOG0774|consen 102 HSDYRAKLLQIRQIYHNELEKYEQACNEFTTH---VMNLLRE 140 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 45678888888999999999999999888654 7777764
No 70
>PRK14156 heat shock protein GrpE; Provisional
Probab=29.04 E-value=2.1e+02 Score=26.56 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 227 KDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 227 ~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
...+++|...++++..++..|.-+++.|+-.-.|..+|...
T Consensus 30 ~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 30 TPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888889999999999999999888888888644
No 71
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.00 E-value=3.8e+02 Score=25.76 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 019080 225 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 274 (346)
Q Consensus 225 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~ 274 (346)
.|+.|...|...=..+.+-+.|=.+.+..-.....-|...+++||+++++
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333333333333444566667778888666
No 72
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=28.91 E-value=4.2e+02 Score=23.61 Aligned_cols=61 Identities=21% Similarity=0.393 Sum_probs=33.0
Q ss_pred Eeccc-cchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhhhhhHHHHHHHHH
Q 019080 214 LCAKS-YEDNSQK-LKDIEAQILRKRKELREFEIEYRKALARF------------------QEATNRYSQEKQSVDELLK 273 (346)
Q Consensus 214 l~~~~-~~~~~~~-I~~vE~~l~~KK~EL~~Fe~EY~eak~kf------------------~ev~~r~~~e~~~ideLL~ 273 (346)
+++|+ ..+..++ ++.+-.....-|..|+....++.+..++. ++++.+|..+ +|++++
T Consensus 82 v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~---id~~~~ 158 (165)
T PF01765_consen 82 VPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKK---IDELLK 158 (165)
T ss_dssp EE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34443 3343443 55666666666666666666665555444 3455555555 666766
Q ss_pred hHHH
Q 019080 274 QRDA 277 (346)
Q Consensus 274 ~Re~ 277 (346)
..++
T Consensus 159 ~kek 162 (165)
T PF01765_consen 159 KKEK 162 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 73
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=28.75 E-value=3.1e+02 Score=23.58 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEK 265 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~ 265 (346)
..|...=.++..+-.++...+.+|.+...+++++..+|...+
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~ 96 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA 96 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Confidence 345555566666667777777777777777777777776653
No 74
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.68 E-value=2.8e+02 Score=30.17 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhHHHHHHHHHhHH
Q 019080 227 KDIEAQILRKRKELREFEIEYRKA-------LARFQEATNRYSQEKQSVDELLKQRD 276 (346)
Q Consensus 227 ~~vE~~l~~KK~EL~~Fe~EY~ea-------k~kf~ev~~r~~~e~~~ideLL~~Re 276 (346)
..+|.+....|.++.+++.+.... ..++++++......+.+.+.|..++.
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~ 216 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLA 216 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433 33444444444444444555555443
No 75
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=28.48 E-value=42 Score=27.64 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=17.8
Q ss_pred cccCccceeeccCCceEEE-EecCcc
Q 019080 179 EGLQPCEVSELKAGTHIFA-VYGDNF 203 (346)
Q Consensus 179 d~~q~~e~~~L~pG~Hlf~-VYGDNw 203 (346)
+.=|......|.||+|.+. ++||+-
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~~d~~ 74 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQLGDGD 74 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEeCCCC
Confidence 3445555678999999998 566654
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.26 E-value=2.9e+02 Score=26.96 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhh
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHS 280 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~ 280 (346)
..+.+...++++...+.+|.+.++...++.+..++.+..-.++ ...+..+|+++-.
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~---~~~~~~~~~~L~~ 170 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE---GQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4456777778888888888888888888888888877766655 3556666665443
No 77
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.04 E-value=2.7e+02 Score=27.65 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH-HHhh
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR-DAIH 279 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~R-e~iy 279 (346)
.+|.++=.++...++|+.+.+.|..+.+.+-++.-++-.+. +++|+.| ..+|
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r----~~~l~~raRAmq 111 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER----QELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45666667777888888888888888888888888887777 6788887 4444
No 78
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=28.01 E-value=3.4e+02 Score=25.87 Aligned_cols=46 Identities=7% Similarity=0.233 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
..+++++++.+..-+.++.+-+.+|..+...+.++..+|..++...
T Consensus 153 ~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~ 198 (240)
T cd07672 153 VKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKA 198 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999986543
No 79
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=27.81 E-value=3e+02 Score=22.47 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQE 264 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e 264 (346)
.+|..-=.+|...|.-+..++.-.+.+|.+|++=+.|+..+
T Consensus 32 ~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 32 HKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666777777788888888888888777777766
No 80
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.69 E-value=2.7e+02 Score=31.08 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=9.4
Q ss_pred ceEEEEeeccCCC
Q 019080 114 KFKLLYFEQDTNG 126 (346)
Q Consensus 114 KFKLl~FD~e~~G 126 (346)
+-.||++|.=++|
T Consensus 402 ~~sLvLlDE~g~G 414 (771)
T TIGR01069 402 ENSLVLFDELGAG 414 (771)
T ss_pred CCcEEEecCCCCC
Confidence 3578999887654
No 81
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.35 E-value=2e+02 Score=22.29 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019080 226 LKDIEAQILRKRKELREFEIEYR 248 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY~ 248 (346)
|.++|..|.+....+...+.|--
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~ 24 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENE 24 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 82
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.33 E-value=3.1e+02 Score=27.26 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 019080 245 IEYRKALARFQEATNRYSQEKQSVDELLKQ 274 (346)
Q Consensus 245 ~EY~eak~kf~ev~~r~~~e~~~ideLL~~ 274 (346)
+||-+.+..|++.-.++.+...+-.+|+++
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~e 157 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKE 157 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333334333
No 83
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=27.21 E-value=2e+02 Score=26.97 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHhHHHhhhhhcc
Q 019080 239 ELREFEIEYRKALARFQEATN-RYSQEKQSVDELLKQRDAIHSSFTV 284 (346)
Q Consensus 239 EL~~Fe~EY~eak~kf~ev~~-r~~~e~~~ideLL~~Re~iy~s~~~ 284 (346)
-|..-+.|+..|....+.+-. ....+-..+.+.|+.|..+|+.|..
T Consensus 90 ai~~a~~e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~ 136 (204)
T PF10368_consen 90 AIEKAKEEFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYK 136 (204)
T ss_dssp HHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333 2456677788899999999988754
No 84
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=26.63 E-value=2.4e+02 Score=29.25 Aligned_cols=61 Identities=13% Similarity=0.329 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhcc
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTV 284 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~ 284 (346)
...|.+|+++|..-|.++.++-.+--+.-.++.+..++|...++.||.+...-+ .+..|--
T Consensus 115 qvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~ 175 (391)
T KOG1850|consen 115 QVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGK 175 (391)
T ss_pred HhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH
Confidence 345889999999999999999999899999999999999999999998887666 6666543
No 85
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.35 E-value=3.4e+02 Score=26.96 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATN 259 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 259 (346)
..+++...+++|..++.+|...+.+..+....|++.+.
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~ 263 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQK 263 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457777888888888888888877777777777665
No 86
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=26.30 E-value=3e+02 Score=23.49 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019080 226 LKDIEAQILRKRKELREFEI 245 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~ 245 (346)
+.+++++|...+++|.+.++
T Consensus 4 ~s~I~~eIekLqe~lk~~e~ 23 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAET 23 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666655555555443
No 87
>PF00647 EF1G: Elongation factor 1 gamma, conserved domain; InterPro: IPR001662 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents a conserved domain usually found near the C terminus of EF1B-gamma chains, a peptide of 410-440 residues. The gamma chain appears to play a role in anchoring the EF1B complex to the beta and delta chains and to other cellular components. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 1PBU_A.
Probab=26.25 E-value=51 Score=28.46 Aligned_cols=54 Identities=22% Similarity=0.435 Sum_probs=27.6
Q ss_pred eeeeeecccchhhhhcCCCchhhhhhhcccCccceeeccCCceEEEEecCcccccceEEEEEEec
Q 019080 152 FQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCA 216 (346)
Q Consensus 152 f~vy~l~~~~n~~~~~kd~~~afF~~Ld~~q~~e~~~L~pG~Hlf~VYGDNwfk~a~ytie~l~~ 216 (346)
+-.|++.++....-++..--.-||.|||.+....-- ..+|||+| -+..|.-+.+
T Consensus 49 ~~~Yky~~El~~~fmt~Nli~Gf~QRle~~rK~aFg-------~~~v~G~~----~~~~I~Gvwv 102 (107)
T PF00647_consen 49 FCDYKYNDELTMTFMTCNLIGGFFQRLEKLRKYAFG-------SMSVFGED----NNSDISGVWV 102 (107)
T ss_dssp EE--S-GGG---STTHHHHHHHHHHHGGGTGGGEEE---------EEES-S----TT-EEEEEEE
T ss_pred EEecCChhhhccceeehhHHHHHHHHHHHHhhhhee-------EEEEEecC----CCCceEEEEE
Confidence 334555555444444444446889999877553322 23789999 5678877665
No 88
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=25.93 E-value=78 Score=29.22 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=33.1
Q ss_pred cccchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH-HHhhhhh
Q 019080 217 KSYEDNSQK-LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR-DAIHSSF 282 (346)
Q Consensus 217 ~~~~~~~~~-I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~R-e~iy~s~ 282 (346)
...+++.+. |..-.-+|.+++.||++.|.|.++- +..++++|+.+ .+|-+.|
T Consensus 62 eI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~--------------ekp~Kd~LK~ki~~I~~~~ 115 (158)
T PF03112_consen 62 EIKTEQSAENLECSLMEIDSLQTELNKIQNENKKR--------------EKPIKDLLKIKIDEIMNKY 115 (158)
T ss_pred hccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh--------------hchHHHHHHHHHHHHHhhc
Confidence 444444333 7777778889999999999888432 22356666655 5555544
No 89
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.90 E-value=3.3e+02 Score=30.42 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=16.8
Q ss_pred cCcchhHHHH-----HHHHHhcCCCcccc
Q 019080 30 SNLGTVNTMF-----AALFSKLGVPIKTT 53 (346)
Q Consensus 30 SelGtv~r~f-----~ALFskLGVPIkT~ 53 (346)
.|+|+=.+.. .++..++|.|||-.
T Consensus 335 pN~gGKTt~lktigl~~~maq~G~~vpa~ 363 (782)
T PRK00409 335 PNTGGKTVTLKTLGLAALMAKSGLPIPAN 363 (782)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCcccC
Confidence 4566555443 56889999998875
No 90
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.69 E-value=2.8e+02 Score=27.55 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=33.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019080 220 EDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQE 264 (346)
Q Consensus 220 ~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e 264 (346)
....++|.+++.++..-+.+|...+++-.+....-+++....+.+
T Consensus 4 ~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~ 48 (344)
T PF12777_consen 4 ENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKE 48 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888877777777766655443
No 91
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=25.42 E-value=4e+02 Score=25.47 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL 272 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL 272 (346)
.++.+++.++...+.++.+=+.+|..+.+.+.++..+|.+++..+=+.+
T Consensus 153 keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~ 201 (242)
T cd07671 153 KQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVF 201 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999999999999999999999886654443
No 92
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.39 E-value=3.9e+02 Score=22.07 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019080 226 LKDIEAQILRKRKELREFEI 245 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~ 245 (346)
+-.|+..|..||.|+.....
T Consensus 9 ~~~~~~~l~~kr~e~~~~~~ 28 (126)
T PF13863_consen 9 MFLVQLALDTKREEIERREE 28 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 93
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=25.28 E-value=4.5e+02 Score=25.28 Aligned_cols=64 Identities=9% Similarity=0.277 Sum_probs=53.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhccc
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 285 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~ 285 (346)
...++.+..+++...+..+..++.-..++++.|.+..+.+.+-+..+-..+..+-......+..
T Consensus 242 ~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~Ia~~ 305 (306)
T PF04888_consen 242 LQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSGDTQAQIASS 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4456888888888888899999999999999999999999999988988888887776665543
No 94
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=25.15 E-value=1e+02 Score=26.25 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=24.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhh
Q 019080 219 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHS 280 (346)
Q Consensus 219 ~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~ 280 (346)
+-.....|..++..|...|..|.+|+.+-..+.. ......+++...|..|..+-.
T Consensus 57 Fv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~-------~l~~~~~~i~~~l~~~~~l~~ 111 (133)
T PF06148_consen 57 FVSLSTNLVGMDEKIEELRKPLSQFREEVESVRD-------ELDNTQEEIEDKLEERKELRE 111 (133)
T ss_dssp -----------------HHHHHHHHHHHHHHHHH-------S-STTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445577888888888889999888877755544 445555556666666655543
No 95
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=25.12 E-value=3.2e+02 Score=30.24 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---HhHHHhhhhhcc
Q 019080 225 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL---KQRDAIHSSFTV 284 (346)
Q Consensus 225 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL---~~Re~iy~s~~~ 284 (346)
++...++.+..-+.+...+..|+-+.+........+++.....+.+-. .+|.++|+...-
T Consensus 249 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 249 ELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILE 311 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666666666666666666666666666666 888899998764
No 96
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.97 E-value=3.8e+02 Score=25.77 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 230 EAQILRKRKELREFEIEYRKALARFQEA 257 (346)
Q Consensus 230 E~~l~~KK~EL~~Fe~EY~eak~kf~ev 257 (346)
+.+.-..++.+..+..||..++..-+++
T Consensus 73 ~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 73 ESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444443
No 97
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.92 E-value=2.3e+02 Score=26.67 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRK 249 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~e 249 (346)
....+|.+++++|.+.+.+.++-..|..+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45556777777777776666555555544
No 98
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.82 E-value=2.3e+02 Score=33.20 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLK 273 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~ 273 (346)
....++.++..|..++.||.+.++.|.+....=.-...|..+-.+.-.+||.
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~ 377 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLA 377 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888999999999999999999987776655555566655555555553
No 99
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.64 E-value=4.9e+02 Score=22.96 Aligned_cols=70 Identities=23% Similarity=0.371 Sum_probs=44.4
Q ss_pred hhhcccCccceeeccCCceEEEEecCcccccceEEEEEEec-cccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 176 KRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCA-KSYE-DNSQKLKDIEAQILRKRKELREFEIEYRKALAR 253 (346)
Q Consensus 176 ~~Ld~~q~~e~~~L~pG~Hlf~VYGDNwfk~a~ytie~l~~-~~~~-~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~k 253 (346)
+.||.+-. .|.-+.=+||-= ++. +|. +... ...+++..++.+|...++|+...+.++..+.+.
T Consensus 37 k~Ld~L~~-------~g~i~~K~~GKq-----kiY---~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 37 KALDSLVE-------EGKIVEKEYGKQ-----KIY---FANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHh-------CCCeeeeeecce-----EEE---eeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666533 566666677631 111 232 2211 245668888888888888888888888888887
Q ss_pred HHHHHHh
Q 019080 254 FQEATNR 260 (346)
Q Consensus 254 f~ev~~r 260 (346)
.......
T Consensus 102 L~~L~~~ 108 (169)
T PF07106_consen 102 LASLSSE 108 (169)
T ss_pred HHHHhcC
Confidence 7765543
No 100
>PRK09039 hypothetical protein; Validated
Probab=24.49 E-value=4.2e+02 Score=26.58 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHhHHHhhhhh
Q 019080 225 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS-VDELLKQRDAIHSSF 282 (346)
Q Consensus 225 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~-ideLL~~Re~iy~s~ 282 (346)
+|..+++||...-.+|...|....++..+.++.-.++..-... +.+|-.-|.+++..+
T Consensus 145 qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 145 QIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444444444555555555555555555544444444422 555555577776444
No 101
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=24.41 E-value=29 Score=22.60 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=7.4
Q ss_pred ccceeeeecC
Q 019080 331 KKWFNLNLKG 340 (346)
Q Consensus 331 ~kw~n~~~~~ 340 (346)
.||||+.-|-
T Consensus 10 skwfnidnki 19 (24)
T PF08053_consen 10 SKWFNIDNKI 19 (24)
T ss_pred eeeEeccCee
Confidence 5899987553
No 102
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.36 E-value=5.2e+02 Score=25.68 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEY 247 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY 247 (346)
++|.++|.+-.....||.+.+.|-
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 103
>PRK14161 heat shock protein GrpE; Provisional
Probab=24.31 E-value=3.6e+02 Score=24.95 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019080 228 DIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 228 ~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 268 (346)
..+++|...++|+..++..|.-+++.|+-...|..+|.+.+
T Consensus 23 ~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~ 63 (178)
T PRK14161 23 TANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEA 63 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777788888888888888888888887776443
No 104
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=24.18 E-value=3.1e+02 Score=21.73 Aligned_cols=32 Identities=22% Similarity=0.541 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 019080 234 LRKRKELREFEIEYRKALARFQEATNRYSQEK 265 (346)
Q Consensus 234 ~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~ 265 (346)
...|-...++..+|..++..|+.+..+|.+.+
T Consensus 67 ~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~ 98 (102)
T PF14523_consen 67 RQQKLQREKLSRDFKEALQEFQKAQRRYAEKE 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888888888888888888887654
No 105
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=24.12 E-value=3.2e+02 Score=24.96 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEI 245 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~ 245 (346)
..+.+..++..|..|+.|+..+..
T Consensus 59 ~~~~v~~~~~~i~~k~~El~~L~~ 82 (146)
T PF05852_consen 59 IKNKVSSLETEISEKKKELSHLKK 82 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567777777777777766554
No 106
>PF09554 RE_HaeII: HaeII restriction endonuclease; InterPro: IPR019058 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes Type-2 restriction enzyme NgoBI, and HaeII. They recognise the double-stranded sequence RGCGCY and cleaves after C-5.
Probab=23.95 E-value=51 Score=33.25 Aligned_cols=62 Identities=21% Similarity=0.347 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCccccccHH---HHHHHHCCCceeeecCCcceeecceeccceeEEEEEechhhhccce
Q 019080 37 TMFAALFSKLGVPIKTTISAN---VLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAGI 103 (346)
Q Consensus 37 r~f~ALFskLGVPIkT~Is~k---VLeeA~nG~v~v~~L~~G~~v~~kVeKQ~AhFf~I~itee~~~~Gv 103 (346)
-+|-+|.+.|||.|+-+++-+ +|.|-.+-+-.+..|....+ --++.||||||-||.+ |+.|+
T Consensus 157 aLf~~li~~l~v~v~i~~~~~n~~Ll~Ef~dft~kil~l~~~~~----~~~~~Aki~RVGVTNA-ADRGL 221 (338)
T PF09554_consen 157 ALFETLINQLNVKVEIDLPENNYDLLKEFEDFTKKILNLNPSNP----SLTLNAKIYRVGVTNA-ADRGL 221 (338)
T ss_pred HHHHHHHHHhCcEEEEecCchhhHHHHHHHHHHHHHhccCCCCc----cccccceeEEeccccc-hhcch
Confidence 356778889999998888765 33343333322333322222 2368899999999987 44454
No 107
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=23.83 E-value=6e+02 Score=23.66 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 019080 244 EIEYRKALARFQEATNRYSQ 263 (346)
Q Consensus 244 e~EY~eak~kf~ev~~r~~~ 263 (346)
+.|..+...+|+.++..+.+
T Consensus 120 e~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 120 EQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 108
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.71 E-value=3.1e+02 Score=27.81 Aligned_cols=63 Identities=27% Similarity=0.434 Sum_probs=39.6
Q ss_pred hhhhhHHHHHHHHHHHHHHH--HHHHHHHHH-----HHHHHHHHHHhhhhh-------HHHHHHHHHhHHHhhhhhc
Q 019080 221 DNSQKLKDIEAQILRKRKEL--REFEIEYRK-----ALARFQEATNRYSQE-------KQSVDELLKQRDAIHSSFT 283 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL--~~Fe~EY~e-----ak~kf~ev~~r~~~e-------~~~ideLL~~Re~iy~s~~ 283 (346)
....+|+++|.|+...|+|- ++|+-|=.| .+.+.++....|... ++.-+.|=+.|+.|-.++-
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 46789999999999888874 345555443 455555554444332 3344556666776665543
No 109
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=23.68 E-value=3.5e+02 Score=25.10 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019080 229 IEAQILRKRKELREFEIEYRKALARFQEATNRY 261 (346)
Q Consensus 229 vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~ 261 (346)
+=+++...|+||..++++|...+.-|+.++.++
T Consensus 70 ~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~ 102 (157)
T COG3352 70 QKKQLQDIKEELERLEENIKDLVSLYELVSRDF 102 (157)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335667888999999999999999998887743
No 110
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=23.64 E-value=3.3e+02 Score=21.72 Aligned_cols=29 Identities=10% Similarity=0.478 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019080 235 RKRKELREFEIEYRKALARFQEATNRYSQ 263 (346)
Q Consensus 235 ~KK~EL~~Fe~EY~eak~kf~ev~~r~~~ 263 (346)
.++.....+..+|.+++..|..+=.+|.+
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQRLQRKYRE 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555543
No 111
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=23.55 E-value=3.9e+02 Score=23.76 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 019080 226 LKDIEAQILRKRKELREFE---IEYRKALARFQEATNRYS 262 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe---~EY~eak~kf~ev~~r~~ 262 (346)
+.++|+.+.+-++.|++.+ .++..|..+...+..|+.
T Consensus 92 ~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~ 131 (145)
T PRK13452 92 QAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLK 131 (145)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543 256666666666666654
No 112
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=23.52 E-value=3.2e+02 Score=25.97 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=30.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATN 259 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 259 (346)
+..++|++|-.+|..|=+||.+++..+-.-.-+-.|-|+
T Consensus 51 eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~EFVE 89 (205)
T PF15079_consen 51 ELKNELREVREELKEKMEEIKQIKDIMDKDFDKLHEFVE 89 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 678899999999999999999999876554444444333
No 113
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=23.43 E-value=2.9e+02 Score=24.03 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 274 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~ 274 (346)
..+-+|+.|+=-+.||.+|+-.++|+. -++=.+.|+.|++.-++||..
T Consensus 13 FlD~aRq~e~~FlqKr~~LS~~kpe~~-----lkEEi~eLK~ElqRKe~Ll~K 60 (106)
T PF11594_consen 13 FLDVARQMEAFFLQKRFELSAYKPEQV-----LKEEINELKEELQRKEQLLQK 60 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999998872 234456666777777777644
No 114
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=23.36 E-value=2.3e+02 Score=24.53 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=23.0
Q ss_pred ceeEEeeeccccCcceeeeeeeeceeeeeeccc
Q 019080 128 YGLALQEDSEKTGKVTSAGMYFLHFQVYRMDST 160 (346)
Q Consensus 128 ~~l~lqeeS~K~~k~T~A~myFlpf~vy~l~~~ 160 (346)
+-|.|++...+..+.-..+++.++|.+|.++.+
T Consensus 50 v~i~L~q~~~r~~~~~~~~~~~IGf~v~~~~~~ 82 (150)
T cd00214 50 VLIALMQKNRRHLRKKGLDLLTIGFHVYKVPGE 82 (150)
T ss_pred EEEEeccCCcchhcccCCCcceEEEEEEEeCCc
Confidence 556777776555444345688899999999753
No 115
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=23.26 E-value=48 Score=24.54 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=8.6
Q ss_pred ccCCceEEEE
Q 019080 189 LKAGTHIFAV 198 (346)
Q Consensus 189 L~pG~Hlf~V 198 (346)
|+||+|+.|-
T Consensus 2 l~pG~~V~CA 11 (42)
T PF09866_consen 2 LSPGSFVRCA 11 (42)
T ss_pred ccCCCEEEEE
Confidence 6899999985
No 116
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.16 E-value=4.8e+02 Score=26.05 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhc
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFT 283 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~ 283 (346)
...+....+..|..++.||...+.|-.++.+...++..|.+.-+...-+|=-.|-.+...++
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888899999999999999999999999998877777777667766666543
No 117
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=23.05 E-value=5e+02 Score=24.15 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhccc
Q 019080 224 QKLKDIEAQILRKRKELREFEIE----------YRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 285 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~E----------Y~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~ 285 (346)
+-|+..+.+...-+.+|..+++. +...........-.+....+....|-.+|+++|..|...
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443 222233333333344445555666677777777777643
No 118
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=22.96 E-value=52 Score=31.85 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=12.3
Q ss_pred ccCCceEEEEecCccccc
Q 019080 189 LKAGTHIFAVYGDNFFKT 206 (346)
Q Consensus 189 L~pG~Hlf~VYGDNwfk~ 206 (346)
=..+.||+|||--||...
T Consensus 192 ~~~~~~vIcVYT~Df~D~ 209 (243)
T PF08939_consen 192 DGDDRRVICVYTPDFRDR 209 (243)
T ss_dssp TTSS-EEEEEEES-TT-H
T ss_pred CCCCCEEEEEECCCCCCH
Confidence 447889999999998764
No 119
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=22.89 E-value=2.5e+02 Score=27.88 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=47.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRD 276 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re 276 (346)
.-..|.+|.++|....+.-.+...|..+...++...+..|..-.+..+.+++.++
T Consensus 112 Fq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~ke 166 (309)
T PF09728_consen 112 FQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKE 166 (309)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3456889999999998888889999999999999999999988888888888875
No 120
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=22.52 E-value=5.2e+02 Score=25.48 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=51.3
Q ss_pred ccceEEEEEEec--cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhh
Q 019080 205 KTATYTIEALCA--KSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 282 (346)
Q Consensus 205 k~a~ytie~l~~--~~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~ 282 (346)
.++|=.|.+--. ....++..+|+++|..+..--+-+-..=.|. +|+++-+.|-.-..+ -.+.+.|...|++||..+
T Consensus 93 ~~cn~~I~~a~~~~~~t~ee~~kI~e~~e~~~~~d~sIg~lg~e~-dalakrk~V~~a~~~-f~el~rl~~~rkei~~~v 170 (258)
T COG5200 93 LSCNDGIRAAGLEDRTTPEEFGKIKEKEELFNRVDESIGELGMEG-DALAKRKLVERACSA-FNELERLREERKEIKEAV 170 (258)
T ss_pred HHhcchhhhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345555555433 4566788899999998887777666666665 455555543332222 234688999999999988
Q ss_pred c
Q 019080 283 T 283 (346)
Q Consensus 283 ~ 283 (346)
.
T Consensus 171 ~ 171 (258)
T COG5200 171 Y 171 (258)
T ss_pred H
Confidence 7
No 121
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.17 E-value=49 Score=35.29 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=19.0
Q ss_pred EecCcccccceEEEEEEeccccchhhhhHHHHHHHHHHHHHH
Q 019080 198 VYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKE 239 (346)
Q Consensus 198 VYGDNwfk~a~ytie~l~~~~~~~~~~~I~~vE~~l~~KK~E 239 (346)
-||+|| ++|++. .|.++|..-+.+|.+
T Consensus 42 yYGg~w---aSfSms------------~ihe~~e~~l~~~d~ 68 (547)
T KOG4405|consen 42 YYGGNW---ASFSMS------------MIHEVEEAALTKKDH 68 (547)
T ss_pred ccCCcc---cceeec------------hhhhhhHHHHhhhhc
Confidence 499999 788865 566666665555554
No 122
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=22.16 E-value=4.9e+02 Score=25.37 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL 272 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL 272 (346)
...++.++..++...+.+..+=+.+|..++....+.+.+|..++..+=+-+
T Consensus 166 s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~ 216 (258)
T cd07680 166 TPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQC 216 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999987765544
No 123
>PRK14163 heat shock protein GrpE; Provisional
Probab=22.11 E-value=4.5e+02 Score=25.24 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 226 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
+...+.+|...++++..++..|.-+++.|+-.-.|..+|.+.
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~ 83 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVT 83 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777777777777777666543
No 124
>PRK09806 tryptophanase leader peptide; Provisional
Probab=21.90 E-value=34 Score=22.61 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=7.5
Q ss_pred ccceeeeecC
Q 019080 331 KKWFNLNLKG 340 (346)
Q Consensus 331 ~kw~n~~~~~ 340 (346)
.||||+.-|-
T Consensus 10 skwfnidnki 19 (26)
T PRK09806 10 SKWFNIDNKI 19 (26)
T ss_pred eeEEeccCee
Confidence 5899997653
No 125
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.75 E-value=3.9e+02 Score=26.60 Aligned_cols=53 Identities=28% Similarity=0.458 Sum_probs=31.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 019080 220 EDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRD 276 (346)
Q Consensus 220 ~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re 276 (346)
.+.++++.+.-+.--..++|+...|.||.++..+-+. +..|.....+.++.+.
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~----le~E~s~LeE~~~~l~ 190 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR----LEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhch
Confidence 3455555555555556677788888888777666544 3334444445555443
No 126
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=21.58 E-value=1.3e+02 Score=32.11 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=27.3
Q ss_pred cccccccccccCccccccccceeEEcccCcc-hhHHHHHHHHHhc----CCCcccccc
Q 019080 3 RHLDLSIFNYKSFQAIDAEGMDMEIDLSNLG-TVNTMFAALFSKL----GVPIKTTIS 55 (346)
Q Consensus 3 ~~~~~~~~d~~g~~a~~~~~~d~EiDlSelG-tv~r~f~ALFskL----GVPIkT~Is 55 (346)
+.+++...|..|= ...+.| ...| +++|++||++-.. |+-.|..|.
T Consensus 423 ~~~~~~~~d~~g~----~~~~~m----gcyGIGvsRli~aiie~~~D~~Gl~wP~~iA 472 (568)
T TIGR00409 423 EALKATFLDENGK----NQFMTM----GCYGIGVSRLVSAIAEQHHDERGIIWPKAIA 472 (568)
T ss_pred HhcCCEEECCCCC----EEEEEE----eCCcchHHHHHHHHHHHhCccCCCcCChhhC
Confidence 4455555555551 123444 3777 5899999999876 655444443
No 127
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.50 E-value=4.9e+02 Score=26.46 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 019080 226 LKDIEAQILRKRKELREFEIEY------RKALARFQEATNRYSQEKQSVDELLKQRD 276 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY------~eak~kf~ev~~r~~~e~~~ideLL~~Re 276 (346)
+..++.++....+++.+++... ..-++..++-...+.++.+++.+|++...
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~ 300 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYG 300 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444444444432 23334444455566666666666655543
No 128
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.14 E-value=2.6e+02 Score=29.72 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDA 277 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~ 277 (346)
+.++.++.+|....+++...+....+....|.++..++..-.+.++++-+.+.+
T Consensus 348 ~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~e 401 (569)
T PRK04778 348 ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEK 401 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333333333333333333333333333333
No 129
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.68 E-value=5e+02 Score=22.47 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIE 246 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~E 246 (346)
.+..++|.+|...|.||.+-+.|
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~ 47 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQE 47 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888877766
No 130
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.61 E-value=3.4e+02 Score=26.47 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATN 259 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 259 (346)
-.|+.+..++.+.......++.+|.++++..+..-.
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~ 45 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNK 45 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544433
No 131
>PRK09039 hypothetical protein; Validated
Probab=20.56 E-value=5.7e+02 Score=25.65 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=53.4
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhh
Q 019080 218 SYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 282 (346)
Q Consensus 218 ~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~ 282 (346)
.+++...+|..+-.||..-|..|...+.+-.++.++-.+.-.++..-.+.++.+|++|..--..|
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~ 195 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY 195 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566888889999999999999999999999999999999999999999998865444444
No 132
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=20.48 E-value=4.9e+02 Score=21.46 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q 019080 239 ELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR 275 (346)
Q Consensus 239 EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~R 275 (346)
.+...+.++.+|+..|+.....|..++ ..+...|
T Consensus 129 ~l~~~~~~~~~ar~~y~~~~~~~~~~l---~~~~~~~ 162 (194)
T cd07307 129 KLAEAEEELQEAKEKYEELREELIEDL---NKLEEKR 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 566777778888888888777777774 4444444
No 133
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=20.47 E-value=5.2e+02 Score=24.73 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=24.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhhhhHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREF------------EIEYRKALARFQEATNRYSQEKQ 266 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~F------------e~EY~eak~kf~ev~~r~~~e~~ 266 (346)
......+.++..|..||.-+.++ +.|++++..+.+++..+|..-..
T Consensus 130 k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~ 187 (234)
T cd07664 130 KCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISK 187 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666554444 34666655554444444444333
No 134
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.43 E-value=4.6e+02 Score=27.98 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQE 256 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~e 256 (346)
...+|.+.|.+-...+.++-....||+..++++.+
T Consensus 18 ~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~ 52 (459)
T KOG0288|consen 18 LNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQE 52 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777777776666665
No 135
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.34 E-value=86 Score=27.64 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=56.7
Q ss_pred HHHHHHh-cCCCccccccHHHHHHHHCCCceeeecCCcceeecc--eeccceeEEEEEechhhhccceEEEEEeCC
Q 019080 39 FAALFSK-LGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGK--VEKQCAHFFGVTINDQQAEAGIVVRVTSTA 111 (346)
Q Consensus 39 f~ALFsk-LGVPIkT~Is~kVLeeA~nG~v~v~~L~~G~~v~~k--VeKQ~AhFf~I~itee~~~~GvVi~c~S~~ 111 (346)
+|||+.+ .|.|+- .=++.-||.|..-+..+-|--.+.+|.-. -+|-..-|=+.+++-+.++--|.|+|-++.
T Consensus 22 lGalyHqf~GtPvs-~~~a~~le~aI~esi~~QP~v~daeV~Id~~~~K~~~~~gYt~LsG~mLdV~l~v~~g~~~ 96 (116)
T COG2098 22 LGALYHQFVGTPVS-PGTAESLEKAIEESIKVQPFVEDAEVKIDRDKEKLDGEFGYTELSGEMLDVRLKVRYGGTV 96 (116)
T ss_pred hhhhhhhhcCCcCC-ccchHHHHHHHHHHHhcCCceeeEEEEecccccccccccceEEeccccEEEEEEEEECCEE
Confidence 5788887 588874 44677899998888888888888887766 455667788899999999999999987643
No 136
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=20.24 E-value=4.3e+02 Score=25.19 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019080 226 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRY 261 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~ 261 (346)
...+..++..--+||.+.+..|..+.+..+.+-.+|
T Consensus 114 ~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~ 149 (237)
T cd07657 114 RQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKF 149 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666666666665555555555444
No 137
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=20.22 E-value=85 Score=23.78 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCCCccc
Q 019080 35 VNTMFAALFSKLGVPIKT 52 (346)
Q Consensus 35 v~r~f~ALFskLGVPIkT 52 (346)
+|-++|++|+-++||||-
T Consensus 8 ~G~~vG~~~~~l~vp~PA 25 (49)
T TIGR03510 8 AGLLVGALYSLLKVPSPA 25 (49)
T ss_pred HHHHHHHHHHHhCCCCCC
Confidence 567889999999999984
No 138
>PRK11677 hypothetical protein; Provisional
Probab=20.14 E-value=5.1e+02 Score=23.13 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhHHHH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEY----RKALARFQEATNRYSQEKQSV 268 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY----~eak~kf~ev~~r~~~e~~~i 268 (346)
..+.+++|.+|...|.||.+-+.|= .+.-.-.+.++..|.+.-+++
T Consensus 28 ~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~Hl 77 (134)
T PRK11677 28 LRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHM 77 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999998888773 333344445556666555444
No 139
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.12 E-value=3.3e+02 Score=26.30 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=34.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019080 220 EDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQE 264 (346)
Q Consensus 220 ~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e 264 (346)
....+++...|+++..+..+|.+-++.+.+++++.++...-|-.-
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 346677888888888888888888888888888877766655554
Done!