Query 019080
Match_columns 346
No_of_seqs 47 out of 49
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nqj_A Class 1 collagenase; be 83.9 4.5 0.00015 33.8 8.1 89 63-155 14-107 (119)
2 3jqw_A COLH protein, collagena 78.7 11 0.00038 31.3 8.7 87 64-158 13-105 (121)
3 3htk_A Structural maintenance 75.3 20 0.00067 25.6 8.4 52 223-274 4-55 (60)
4 3oja_B Anopheles plasmodium-re 67.0 23 0.00077 34.7 9.2 54 237-290 536-589 (597)
5 3hnw_A Uncharacterized protein 63.2 23 0.0008 30.0 7.4 58 217-274 68-125 (138)
6 3na7_A HP0958; flagellar bioge 62.2 32 0.0011 31.1 8.6 41 238-281 132-172 (256)
7 2eqb_B RAB guanine nucleotide 53.6 56 0.0019 26.7 7.8 55 218-272 6-60 (97)
8 4ani_A Protein GRPE; chaperone 44.0 59 0.002 29.7 7.2 45 223-267 58-102 (213)
9 3hnw_A Uncharacterized protein 43.8 91 0.0031 26.4 7.9 53 219-271 77-129 (138)
10 3mov_A Lamin-B1; LMNB1, B-type 37.8 33 0.0011 27.5 4.0 62 224-285 12-73 (95)
11 3iox_A AGI/II, PA; alpha helix 37.4 82 0.0028 32.3 7.7 43 228-270 38-80 (497)
12 3sjb_C Golgi to ER traffic pro 36.9 31 0.0011 28.1 3.8 60 199-271 7-68 (93)
13 2bzb_A Conserved domain protei 35.7 62 0.0021 24.2 5.0 49 226-281 3-51 (62)
14 4h22_A Leucine-rich repeat fli 35.5 1E+02 0.0035 25.5 6.7 57 224-284 37-93 (103)
15 2i52_A Hypothetical protein; s 35.0 11 0.00039 32.0 0.9 72 36-108 23-96 (121)
16 3a7p_A Autophagy protein 16; c 34.8 1.6E+02 0.0056 25.7 8.3 50 223-272 81-130 (152)
17 3na7_A HP0958; flagellar bioge 34.8 1.6E+02 0.0056 26.4 8.7 61 228-288 115-175 (256)
18 1wt6_A Myotonin-protein kinase 31.9 1.8E+02 0.0063 23.1 7.3 45 227-271 27-71 (81)
19 4etp_A Kinesin-like protein KA 31.8 1.2E+02 0.0042 29.5 7.7 53 225-284 4-56 (403)
20 3bas_A Myosin heavy chain, str 31.7 1.4E+02 0.0046 23.3 6.6 20 229-248 12-31 (89)
21 2yib_D RNA-directed RNA polyme 31.6 33 0.0011 36.7 3.8 47 189-236 376-425 (770)
22 4etp_A Kinesin-like protein KA 31.2 91 0.0031 30.4 6.7 39 221-259 7-45 (403)
23 3aco_A Pacsin2, protein kinase 30.8 1.3E+02 0.0046 27.7 7.6 47 224-270 192-238 (350)
24 2pus_A IBDV VP1 RNA-dependant 29.4 17 0.00059 39.1 1.3 28 189-216 397-427 (852)
25 3bas_A Myosin heavy chain, str 29.1 1.9E+02 0.0064 22.5 7.0 10 226-235 16-25 (89)
26 2yi9_A RNA-directed RNA polyme 29.1 41 0.0014 36.0 4.0 47 189-236 376-425 (799)
27 2iec_A Uncharacterized protein 29.1 17 0.00057 31.4 1.0 71 36-109 20-95 (131)
28 3mud_A DNA repair protein XRCC 28.7 2E+02 0.0069 25.7 7.9 59 205-263 105-167 (175)
29 1gk4_A Vimentin; intermediate 28.0 2E+02 0.007 22.0 7.9 28 239-266 16-43 (84)
30 3jqw_A COLH protein, collagena 27.4 36 0.0012 28.2 2.7 24 187-213 89-115 (121)
31 3oja_A Leucine-rich immune mol 25.9 2.7E+02 0.0093 26.6 9.0 55 228-282 421-475 (487)
32 2bsj_A Chaperone protein SYCT; 25.4 33 0.0011 29.2 2.1 20 34-53 7-26 (133)
33 3iox_A AGI/II, PA; alpha helix 25.3 2.7E+02 0.0091 28.6 9.0 27 248-274 79-105 (497)
34 2fic_A Bridging integrator 1; 24.7 1.1E+02 0.0037 26.9 5.5 38 240-280 181-218 (251)
35 3swy_A Cyclic nucleotide-gated 24.4 1.9E+02 0.0067 20.6 6.8 40 221-260 2-41 (46)
36 1fxk_C Protein (prefoldin); ar 24.2 2.8E+02 0.0095 22.2 8.1 16 189-204 66-81 (133)
37 2l6l_A DNAJ homolog subfamily 24.1 27 0.00093 29.1 1.4 34 85-121 116-149 (155)
38 1wn4_A Vontr protein; helix, p 23.9 32 0.0011 22.5 1.4 14 50-63 2-15 (28)
39 2x3v_A Syndapin I, protein kin 22.9 3.3E+02 0.011 24.7 8.6 47 224-270 183-229 (337)
40 4dzo_A Mitotic spindle assembl 22.8 1.9E+02 0.0064 24.1 6.3 38 224-261 4-41 (123)
41 1gk6_A Vimentin; intermediate 22.6 1.4E+02 0.0049 21.6 4.9 30 222-251 5-34 (59)
42 3nmd_A CGMP dependent protein 22.6 1.1E+02 0.0036 23.9 4.3 23 225-247 20-42 (72)
43 3w03_C DNA repair protein XRCC 22.0 1.9E+02 0.0066 25.8 6.6 51 205-255 122-183 (184)
44 2c0s_A Conserved domain protei 21.0 89 0.0031 23.4 3.6 46 226-278 3-48 (64)
45 3u06_A Protein claret segregat 20.4 2.3E+02 0.0078 27.8 7.3 52 227-285 6-57 (412)
46 3rrk_A V-type ATPase 116 kDa s 20.0 2.7E+02 0.0093 25.6 7.5 38 222-259 231-268 (357)
No 1
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=83.91 E-value=4.5 Score=33.77 Aligned_cols=89 Identities=11% Similarity=0.253 Sum_probs=59.2
Q ss_pred HCCCceeeecCC-cceeecceeccc-eeEEEEEechhhhccceEEEEEeCCCCceEEEEeeccCCCcceeEEeeecc-cc
Q 019080 63 LNGTVTVRPLPI-GTSVSGKVEKQC-AHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSE-KT 139 (346)
Q Consensus 63 ~nG~v~v~~L~~-G~~v~~kVeKQ~-AhFf~I~itee~~~~GvVi~c~S~~~SKFKLl~FD~e~~Gg~~l~lqeeS~-K~ 139 (346)
.|+.-++.||++ |+.+.|.+..+. ..+|+++|++. .=|=|.+.+.....+-.++|+.+.=--+ ++.-+.+. +.
T Consensus 14 Nnsf~~An~l~~~n~~v~G~l~~~D~~D~y~f~v~~~---g~v~I~l~~~~~~~~~w~ly~~~dl~ny-v~y~~~~gn~~ 89 (119)
T 1nqj_A 14 NDSSDKATVIPNFNTTMQGSLLGDDSRDYYSFEVKEE---GEVNIELDKKDEFGVTWTLHPESNINDR-ITYGQVDGNKV 89 (119)
T ss_dssp ------CEECCSSSCCEEEEECTTCCEEEEEEEESSC---EEEEEEEEESSSSEEEEEEEECC----C-CEECEEETTEE
T ss_pred CCCHHHcceeccCCeEEEEEeCCCCCcEEEEEECCCC---CeEEEEEEeCCCCCEEEEEEccCCCccc-eEEeecCCCcE
Confidence 566678899999 999999999977 99999999964 4466888888888899999998740022 34323222 22
Q ss_pred -Ccce-eeeeeeeceeee
Q 019080 140 -GKVT-SAGMYFLHFQVY 155 (346)
Q Consensus 140 -~k~T-~A~myFlpf~vy 155 (346)
+++. .+|-|+|-..-|
T Consensus 90 ~~~~~~~pGkYYl~Vy~y 107 (119)
T 1nqj_A 90 SNKVKLRPGKYYLLVYKY 107 (119)
T ss_dssp EEEEEECSEEEEEEEEEE
T ss_pred EEEEEcCCcEEEEEEEEe
Confidence 3333 699999954333
No 2
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=78.75 E-value=11 Score=31.26 Aligned_cols=87 Identities=17% Similarity=0.409 Sum_probs=64.4
Q ss_pred CCCceeeecCC-cceeecceeccc-eeEEEEEechhhhccceEEEEEeCCCCceEEEEeeccCCCcceeEEeeecccc--
Q 019080 64 NGTVTVRPLPI-GTSVSGKVEKQC-AHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKT-- 139 (346)
Q Consensus 64 nG~v~v~~L~~-G~~v~~kVeKQ~-AhFf~I~itee~~~~GvVi~c~S~~~SKFKLl~FD~e~~Gg~~l~lqeeS~K~-- 139 (346)
|..-++.||++ |+.+.|.+..+. ..+|+++|+.. .=|=|.+.+..+..|..++|+.+ +-+ ++.-+.+...
T Consensus 13 nsf~~An~l~~~n~~v~G~l~~~dd~D~y~F~V~~~---g~v~I~l~~~~~~~~~w~ly~~~--~ny-v~y~~~~gn~~~ 86 (121)
T 3jqw_A 13 NSKETASGPIVPGIPVSGTIENTSDQDYFYFDVITP---GEVKIDINKLGYGGATWVVYDEN--NNA-VSYATDDGQNLS 86 (121)
T ss_dssp CSGGGCBCCCCTTSCEEEEECSTTCCEEEEEEESSC---EEEEEEEEECSSSEEEEEEECTT--SCE-EEECEECSSEEE
T ss_pred CCHHHccccccCCcEEEEEeCCcCCeeEEEEEeCCC---CeEEEEEEecCCCcEEEEEEeCC--CCe-EEEeccCCCEEE
Confidence 44466888999 999999999666 99999999986 44678888888899999999999 333 4555443333
Q ss_pred Ccce--eeeeeeeceeeeeec
Q 019080 140 GKVT--SAGMYFLHFQVYRMD 158 (346)
Q Consensus 140 ~k~T--~A~myFlpf~vy~l~ 158 (346)
+++. .+|=|+|. ||+.+
T Consensus 87 ~~~~~~~pGkYYl~--Vy~y~ 105 (121)
T 3jqw_A 87 GKFKADKPGRYYIH--LYMFN 105 (121)
T ss_dssp EEEEECSCEEEEEE--EEEEE
T ss_pred EEEEeCCCeeEEEE--EEEec
Confidence 3332 67999995 45544
No 3
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=75.30 E-value=20 Score=25.61 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 274 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~ 274 (346)
.+.+..+|..+.....+.+.-+.+|.+++.++..++..+..-+..|.++=.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888899999999999999888888888777443
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.00 E-value=23 Score=34.72 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhcccccccc
Q 019080 237 RKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLST 290 (346)
Q Consensus 237 K~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~~~~~~ 290 (346)
++++.++|.|-.+..++.+++-.+..+.+++++.+-++-.+.-+.+-.+|++.+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344444444444555555555555555555555655555555555555555443
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.22 E-value=23 Score=30.05 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=44.3
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 019080 217 KSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 274 (346)
Q Consensus 217 ~~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~ 274 (346)
+..-...+++...|.+|..+.+|+..++.|-.+++.+.+++......-..++++|-.+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566778888888888888888888888888888888887777777777776554
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=62.20 E-value=32 Score=31.12 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhh
Q 019080 238 KELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSS 281 (346)
Q Consensus 238 ~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s 281 (346)
.++...+.++.+.++..++.+.....+ +..|.++|+++-..
T Consensus 132 ~~l~~~~~~l~~~~~~~~~~~~e~~~e---~~~l~~~r~~l~~~ 172 (256)
T 3na7_A 132 KEMLELEKLALELESLVENEVKNIKET---QQIIFKKKEDLVEK 172 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 333333333444444444444333333 56667788765443
No 7
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.56 E-value=56 Score=26.73 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=42.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 019080 218 SYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL 272 (346)
Q Consensus 218 ~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL 272 (346)
.+....++|+..|.++.....|+.++..++.+..++-.++-....+-.+++.+|=
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999988888777776665555555565553
No 8
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=44.02 E-value=59 Score=29.66 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 267 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 267 (346)
.+.+...+++|...+.++..++..|.-+++-|+-.-.|..+|.+.
T Consensus 58 ~~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~ 102 (213)
T 4ani_A 58 AEELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEA 102 (213)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888999999999999999999999999988888888654
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.83 E-value=91 Score=26.39 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=45.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 019080 219 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 271 (346)
Q Consensus 219 ~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideL 271 (346)
.....+.|.+.+.+|...|+||.+.+.++.++.+..++...++......+..|
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566779999999999999999999999999999999888888877767666
No 10
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.77 E-value=33 Score=27.50 Aligned_cols=62 Identities=8% Similarity=-0.032 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhccc
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 285 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~ 285 (346)
++|..++++...--..|...+..|....+.+..++..+..+-+.+..=+...-.-|..+++.
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 73 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDV 73 (95)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555555555544444444444444444443
No 11
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=37.42 E-value=82 Score=32.31 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 019080 228 DIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDE 270 (346)
Q Consensus 228 ~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ide 270 (346)
+.-++=..++.|....+...-++++.|++...+|.++....+.
T Consensus 38 e~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~ 80 (497)
T 3iox_A 38 ANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQK 80 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455555555555555555554444444443333
No 12
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=36.92 E-value=31 Score=28.07 Aligned_cols=60 Identities=10% Similarity=0.188 Sum_probs=0.0
Q ss_pred ecCcccccceEEEEEEeccccchhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 019080 199 YGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREF--EIEYRKALARFQEATNRYSQEKQSVDEL 271 (346)
Q Consensus 199 YGDNwfk~a~ytie~l~~~~~~~~~~~I~~vE~~l~~KK~EL~~F--e~EY~eak~kf~ev~~r~~~e~~~ideL 271 (346)
|.|+|+..- +|. +....+.+..=.+++..|.||+.. |-|| ++|.+.--++.+.+++++.+
T Consensus 7 Yh~~wi~~l------~~~---s~~a~~~~~lk~E~~~lk~E~~stSaQDeF----AKWaKL~Rk~DKl~~ele~l 68 (93)
T 3sjb_C 7 YHEKWISKF------APG---NELSKKYLAKVKERHELKEFNNSISAQDNY----AKWTKNNRKLDSLDKEINNL 68 (93)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHTTSCTTTCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------ccC---cHhHHHHHHHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHH
No 13
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=35.72 E-value=62 Score=24.18 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhh
Q 019080 226 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSS 281 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s 281 (346)
++.+..+|..+|+||..+-.+| .--...|-+++|| +|.||-+=..+...
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~----Gl~~~~vI~~SQe---LD~LIn~Y~k~~~~ 51 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARH----GLDHDKVLLFSRD---LDKLINKFMNVKDK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHH---HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHHH---HHHHHHHHHHHhcc
Confidence 4678889999999998886665 2345566788888 89999876555433
No 14
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=35.50 E-value=1e+02 Score=25.47 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhcc
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTV 284 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~ 284 (346)
++|.+.|..+..-+.|.+.-.+|+..-+. ....++.+...+.+-|++|+++..+=+.
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr----~~~~L~~~~~~lk~~L~qRD~LI~E~~~ 93 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKH----AHSILQFQFAEVKEALKQREEMLEPKLA 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333332 3334555566678889999887765443
No 15
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=35.00 E-value=11 Score=31.99 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=42.2
Q ss_pred HHHHHHHHHh-cCCCccccccHHHHHHHHCCCceeeecCCcceeecc-eeccceeEEEEEechhhhccceEEEEE
Q 019080 36 NTMFAALFSK-LGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGK-VEKQCAHFFGVTINDQQAEAGIVVRVT 108 (346)
Q Consensus 36 ~r~f~ALFsk-LGVPIkT~Is~kVLeeA~nG~v~v~~L~~G~~v~~k-VeKQ~AhFf~I~itee~~~~GvVi~c~ 108 (346)
|--+||||.| .|.||- .=++..||.|..-.+.+.|--....|+-. +.+....|=+.+++-+.++--++|++-
T Consensus 23 GIklGALyHQFvGtPV~-~eta~sLE~AIE~si~~QP~v~~v~V~I~d~~~~~~~~~Yt~L~G~mldV~i~v~y~ 96 (121)
T 2i52_A 23 GIKLGAIFHQYTGIPVN-SENASMAEEFIERSTMIQPFVENVRISINNVKRSSGTYSYSSLNEKMLHAEVLINYN 96 (121)
T ss_dssp HHHHHHHHHHHTTCEEC-TTTHHHHHHHHHHHHTTSTTEEEEEEEECCC------CCCEECCTTTEEEEEEEEET
T ss_pred hhhhhhhhhhccCCccC-cccHHHHHHHHHHHHhcCCceEEEEEEEehhhcccCCCCeeEeecccEEEEEEEEEC
Confidence 4457999999 599995 45677888884333222222211111111 122122355889999999999998876
No 16
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.85 E-value=1.6e+02 Score=25.73 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 019080 223 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL 272 (346)
Q Consensus 223 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL 272 (346)
.++|++.+..|..|.+-+..++-||.....++..+-.+...-.++=+.|+
T Consensus 81 ~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 81 EQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666666666666665555555444444
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.82 E-value=1.6e+02 Score=26.40 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhcccccc
Q 019080 228 DIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTL 288 (346)
Q Consensus 228 ~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~~~~ 288 (346)
++..++..++.++...+.++.+..+.+.+....+.....+++.-+..-..--..+....|+
T Consensus 115 e~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~ 175 (256)
T 3na7_A 115 NLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP 175 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 3333333334444444444444444444444444444444443333333334455555444
No 18
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.92 E-value=1.8e+02 Score=23.09 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 019080 227 KDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 271 (346)
Q Consensus 227 ~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideL 271 (346)
+.|=.+|...|.....|+++-+++.++.++...........+.+|
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888899999999999998877766665555553
No 19
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.84 E-value=1.2e+02 Score=29.48 Aligned_cols=53 Identities=11% Similarity=0.257 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhcc
Q 019080 225 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTV 284 (346)
Q Consensus 225 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~ 284 (346)
+|...+.+|...+.++.+.+.+..+++...+++..+|.+|. ..|..+|+.+.-
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~rr~l~n~~~e 56 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE-------TVRRTLHNELQE 56 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 45666666666666777777777667766677767776664 345666666643
No 20
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.68 E-value=1.4e+02 Score=23.29 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019080 229 IEAQILRKRKELREFEIEYR 248 (346)
Q Consensus 229 vE~~l~~KK~EL~~Fe~EY~ 248 (346)
.|.+|..+..|+.+.+..+.
T Consensus 12 ~eeEm~~~eeel~~lke~l~ 31 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLA 31 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 21
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase, IPNV; 3.80A {Infectious pancreatic necrosis virus}
Probab=31.64 E-value=33 Score=36.66 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=32.2
Q ss_pred ccCCceEEEEecCccc---ccceEEEEEEeccccchhhhhHHHHHHHHHHH
Q 019080 189 LKAGTHIFAVYGDNFF---KTATYTIEALCAKSYEDNSQKLKDIEAQILRK 236 (346)
Q Consensus 189 L~pG~Hlf~VYGDNwf---k~a~ytie~l~~~~~~~~~~~I~~vE~~l~~K 236 (346)
|.||+|++=||+|||+ ...=|+|-.-..+ ..-..+.++-++--|+..
T Consensus 376 l~~~e~~~lvYADN~YI~~~~~wySiDleKgE-an~t~~~a~ai~yyLLtR 425 (770)
T 2yib_D 376 LDNDEDLVMIYADNIYILQDNTWYSIDLEKGE-ANCTPQHMQAMMYYLLTR 425 (770)
T ss_dssp HHTTCCEEEEETTEEEEEETTEEEEEEETTGG-GGCCHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEeccEEEEECCeEEEecccccc-ccCCHHHHHHHHHHHHHc
Confidence 6799999999999996 4455666554443 223456666677777743
No 22
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.24 E-value=91 Score=30.37 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATN 259 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 259 (346)
...++|+.++.++.....++.+++.|+.++..++.+.-.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999998877544
No 23
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=30.84 E-value=1.3e+02 Score=27.66 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDE 270 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ide 270 (346)
.++.+.+.++...+.++.+-+.+|+.+..++.+...+|.+++..+-+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 238 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 238 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788889999999999999999999999999988888887755433
No 24
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs, transferase; 2.40A {Infectious bursal disease virus} PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Probab=29.36 E-value=17 Score=39.06 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=20.7
Q ss_pred ccCCceEEEEecCccc---ccceEEEEEEec
Q 019080 189 LKAGTHIFAVYGDNFF---KTATYTIEALCA 216 (346)
Q Consensus 189 L~pG~Hlf~VYGDNwf---k~a~ytie~l~~ 216 (346)
|.||+|++=||+|||+ ...=|+|-.-..
T Consensus 397 la~~~~~vlvYADN~YI~~~~~wySiDleKg 427 (852)
T 2pus_A 397 LAPEEPKALVYADNIYIVHSNTWYSIDLEKG 427 (852)
T ss_dssp HSSCCSEEEEETTEEEEEETTEEEEEEETTG
T ss_pred hCCCCceEEEEeccEEEEecCeEEEeccccc
Confidence 5799999999999996 345566554433
No 25
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.09 E-value=1.9e+02 Score=22.49 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 019080 226 LKDIEAQILR 235 (346)
Q Consensus 226 I~~vE~~l~~ 235 (346)
+...+.++..
T Consensus 16 m~~~eeel~~ 25 (89)
T 3bas_A 16 MKEQLKQMDK 25 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 26
>2yi9_A RNA-directed RNA polymerase; transferase, reverse transcriptase, IPNV; 2.20A {Infectious pancreatic necrosis virus} PDB: 2yi8_A 2yia_A 2yib_A
Probab=29.06 E-value=41 Score=36.04 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=31.9
Q ss_pred ccCCceEEEEecCccc---ccceEEEEEEeccccchhhhhHHHHHHHHHHH
Q 019080 189 LKAGTHIFAVYGDNFF---KTATYTIEALCAKSYEDNSQKLKDIEAQILRK 236 (346)
Q Consensus 189 L~pG~Hlf~VYGDNwf---k~a~ytie~l~~~~~~~~~~~I~~vE~~l~~K 236 (346)
|.||+|++=||+|||+ ...=|+|-.-..+ ..-..+.++-++--|+..
T Consensus 376 l~~~e~~~lvYADN~YI~~~~~wySiDleKgE-an~t~~~a~ai~yyLLtR 425 (799)
T 2yi9_A 376 LDNDEDLVMIYADNIYILQDNTWYSIDLEKGE-ANCTPQHMQAMMYYLLTR 425 (799)
T ss_dssp HHTTCCEEEEETTEEEEEETTEEEEEEETTGG-GGCCHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEeccEEEEecCeEEEecccccc-ccCCHHHHHHHHHHHHhc
Confidence 5799999999999996 4455666554443 223455666677777643
No 27
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=29.06 E-value=17 Score=31.38 Aligned_cols=71 Identities=11% Similarity=0.245 Sum_probs=46.0
Q ss_pred HHHHHHHHHh-cCCCccccccHHHHHHHHCCCceeeecCCcceeecc---eeccceeEE-EEEechhhhccceEEEEEe
Q 019080 36 NTMFAALFSK-LGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGK---VEKQCAHFF-GVTINDQQAEAGIVVRVTS 109 (346)
Q Consensus 36 ~r~f~ALFsk-LGVPIkT~Is~kVLeeA~nG~v~v~~L~~G~~v~~k---VeKQ~AhFf-~I~itee~~~~GvVi~c~S 109 (346)
|--+||||.| .|.||- .=++..||.|..-.+.+-|-- ..|.-. +.+....|= +.+++-+.++--++|++-.
T Consensus 20 GIklGALyHQFvGtPV~-~eta~sLE~AIE~si~~QP~v--v~V~I~~d~l~~~~~~~~~YteL~G~mLdV~i~v~y~~ 95 (131)
T 2iec_A 20 GITLGAIYHQFCGTPVS-PGTAEEVAKCIERAALLQPCV--IDARVEVDVSSEDTDNYGGYTEVSGRNLRVTIVTRCGE 95 (131)
T ss_dssp HHHHHHHHHHHTTCEEC-GGGHHHHHHHHHHHHTTSTTE--EEEEEEECCCGGGGCSTTSCEECCTTTEEEEEEEEETT
T ss_pred hhhhhhHhhhhcCCccC-cccHHHHHHHHHHHHhcCCeE--EEEEecHHHhhccccCCCCEEeeecccEEEEEEEEECC
Confidence 3457999998 599995 456778888854444433333 222221 233333554 6899999999999988863
No 28
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=28.66 E-value=2e+02 Score=25.66 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=42.7
Q ss_pred ccceEEEEEE---eccccch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019080 205 KTATYTIEAL---CAKSYED-NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQ 263 (346)
Q Consensus 205 k~a~ytie~l---~~~~~~~-~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~ 263 (346)
+++++.+=.+ .++...+ ..+=|.-.|..+....+++..+|.|....|.+|..+...+.+
T Consensus 105 k~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 105 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp SSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666333 3344444 444588889999999999999999999999988888766443
No 29
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=28.01 E-value=2e+02 Score=21.98 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 019080 239 ELREFEIEYRKALARFQEATNRYSQEKQ 266 (346)
Q Consensus 239 EL~~Fe~EY~eak~kf~ev~~r~~~e~~ 266 (346)
.|...+..|....+.+...+..+..+-+
T Consensus 16 ~l~e~e~~~~~~~~~~q~~i~~lE~eL~ 43 (84)
T 1gk4_A 16 QMREMEENFAVEAANYQDTIGRLQDEIQ 43 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333343334444444443333333
No 30
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=27.41 E-value=36 Score=28.15 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.1
Q ss_pred eec-cCCceEEEEecCcccc--cceEEEEE
Q 019080 187 SEL-KAGTHIFAVYGDNFFK--TATYTIEA 213 (346)
Q Consensus 187 ~~L-~pG~Hlf~VYGDNwfk--~a~ytie~ 213 (346)
..+ +||++++.||+ +. ...|+|.+
T Consensus 89 ~~~~~pGkYYl~Vy~---y~~~~g~Y~l~i 115 (121)
T 3jqw_A 89 FKADKPGRYYIHLYM---FNGSYMPYRINI 115 (121)
T ss_dssp EEECSCEEEEEEEEE---EECSCEEEEEEE
T ss_pred EEeCCCeeEEEEEEE---ecCCCccEEEEE
Confidence 346 99999999998 33 67898776
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.85 E-value=2.7e+02 Score=26.55 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhh
Q 019080 228 DIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 282 (346)
Q Consensus 228 ~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~ 282 (346)
+..+++...|..+.+-..++.+-..+..+--+|+..+.++++..+..-++-|...
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 421 EMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 3555555555555566666666666666666677777666666665555544443
No 32
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=25.40 E-value=33 Score=29.24 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhcCCCcccc
Q 019080 34 TVNTMFAALFSKLGVPIKTT 53 (346)
Q Consensus 34 tv~r~f~ALFskLGVPIkT~ 53 (346)
|...++-+||+|+|+|-||+
T Consensus 7 tf~~L~~~lF~KlGl~~~~~ 26 (133)
T 2bsj_A 7 TFTELMQQLFLKLGLNHQVN 26 (133)
T ss_dssp CHHHHHHHHHHHHTCCCCCC
T ss_pred cHHHHHHHHHHHcCCCCCCC
Confidence 35567899999999998875
No 33
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.31 E-value=2.7e+02 Score=28.64 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 019080 248 RKALARFQEATNRYSQEKQSVDELLKQ 274 (346)
Q Consensus 248 ~eak~kf~ev~~r~~~e~~~ideLL~~ 274 (346)
.+.++.|+.....|.++.++++..|++
T Consensus 79 ~~~~AeY~~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 79 QKDLADYPVKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555555666666666666666664
No 34
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=24.75 E-value=1.1e+02 Score=26.87 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhh
Q 019080 240 LREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHS 280 (346)
Q Consensus 240 L~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~ 280 (346)
|.+.|.|+.+|+..|+++.+.+..| +..|...|-..+.
T Consensus 181 l~kae~el~~ak~~ye~ln~~L~~e---Lp~l~~~~~~~~~ 218 (251)
T 2fic_A 181 IAKAEEELIKAQKVFEEMNVDLQEE---LPSLWNSRVGFYV 218 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4457888999999999988777777 5666666655544
No 35
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.45 E-value=1.9e+02 Score=20.56 Aligned_cols=40 Identities=8% Similarity=0.213 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019080 221 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNR 260 (346)
Q Consensus 221 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r 260 (346)
+..+++..+|..|..-..-+..+-.||..++.+-..-+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~ 41 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999888888888888887777665544433
No 36
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.19 E-value=2.8e+02 Score=22.23 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=10.8
Q ss_pred ccCCceEEEEecCccc
Q 019080 189 LKAGTHIFAVYGDNFF 204 (346)
Q Consensus 189 L~pG~Hlf~VYGDNwf 204 (346)
|.+-+|++---|.|||
T Consensus 66 i~~~~~V~v~lG~g~~ 81 (133)
T 1fxk_C 66 LKDTSEVIMSVGAGVA 81 (133)
T ss_dssp CCSTTEEEEEEETTEE
T ss_pred ECCCCEEEEEcCCCEE
Confidence 4456667777777776
No 37
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=24.10 E-value=27 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.383 Sum_probs=25.6
Q ss_pred cceeEEEEEechhhhccceEEEEEeCCCCceEEEEee
Q 019080 85 QCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFE 121 (346)
Q Consensus 85 Q~AhFf~I~itee~~~~GvVi~c~S~~~SKFKLl~FD 121 (346)
+|..+|. |+++++..|+||.|.|=+ =.|+++|-+
T Consensus 116 rCG~~f~--i~~~~l~~~~~v~C~sCS-l~~~v~~~~ 149 (155)
T 2l6l_A 116 RCGGKYS--VSKDEAEEVSLISCDTCS-LIIELLHYN 149 (155)
T ss_dssp SSSCEEE--EETTHHHHCCEEECSSSS-CEEEEECCC
T ss_pred CCCCeEE--ecHHHhCCCCEEECCCCc-eEEEEEEcc
Confidence 4778886 557777789999999977 567777654
No 38
>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=23.87 E-value=32 Score=22.46 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=12.5
Q ss_pred ccccccHHHHHHHH
Q 019080 50 IKTTISANVLEEAL 63 (346)
Q Consensus 50 IkT~Is~kVLeeA~ 63 (346)
++|.||--+||||+
T Consensus 2 l~T~~sNplLEEAL 15 (28)
T 1wn4_A 2 LETQKPNHLLEEAL 15 (28)
T ss_dssp CTTSSTTHHHHHHH
T ss_pred cccccccHHHHHHH
Confidence 57999999999994
No 39
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=22.95 E-value=3.3e+02 Score=24.65 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDE 270 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ide 270 (346)
.++.+++.++...+.++.+-+.+|+.+...+.+....|..++..+=+
T Consensus 183 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 229 (337)
T 2x3v_A 183 EQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFE 229 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45778888999999999999999999999999998888887655433
No 40
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=22.83 E-value=1.9e+02 Score=24.06 Aligned_cols=38 Identities=8% Similarity=0.257 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019080 224 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRY 261 (346)
Q Consensus 224 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~ 261 (346)
.+|.+.+++|....+-++.++.-|.+.-..|.+++..+
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888888888888887777643
No 41
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.63 E-value=1.4e+02 Score=21.61 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKAL 251 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak 251 (346)
.-..|..+|++|...|.+|..--.||.+.+
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~Ll 34 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLL 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999888986654
No 42
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.58 E-value=1.1e+02 Score=23.89 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 019080 225 KLKDIEAQILRKRKELREFEIEY 247 (346)
Q Consensus 225 ~I~~vE~~l~~KK~EL~~Fe~EY 247 (346)
.|++++..|..|.+||+.-+.--
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I 42 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALI 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777776665543
No 43
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.00 E-value=1.9e+02 Score=25.84 Aligned_cols=51 Identities=12% Similarity=0.226 Sum_probs=34.1
Q ss_pred ccceEEEEEEec---cccch--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 205 KTATYTIEALCA---KSYED--------NSQKLKDIEAQILRKRKELREFEIEYRKALARFQ 255 (346)
Q Consensus 205 k~a~ytie~l~~---~~~~~--------~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ 255 (346)
++.+|.+-++.. +...+ ..+.+.+..+++..+.+|-..++.|..+++++++
T Consensus 122 ~di~frLGSv~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 122 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp TTEEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeeeeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667888655554 32222 4456677777777777777777777777777765
No 44
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=21.00 E-value=89 Score=23.43 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHh
Q 019080 226 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 278 (346)
Q Consensus 226 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~i 278 (346)
++.+..+|..+|.||.++-.+| .--...|-+++|| .|.||-+=..+
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~----Gl~~~~vI~~SQe---LD~LIn~Y~k~ 48 (64)
T 2c0s_A 3 VTKLNDRIEAKKKELIYLVEKY----GFTHHKVISFSQE---LDRLLNLLIEL 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CTTSHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHHH---HHHHHHHHHHH
Confidence 4678889999999998876555 2234456677777 78888764433
No 45
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.41 E-value=2.3e+02 Score=27.76 Aligned_cols=52 Identities=12% Similarity=0.186 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHhhhhhccc
Q 019080 227 KDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 285 (346)
Q Consensus 227 ~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ideLL~~Re~iy~s~~~~ 285 (346)
..+|+++...|+++.+.+.+..+.++...+...++.++ -.+|..+|+.+...
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-------~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS-------NMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 55667777777777777777766666666666655544 25677788777543
No 46
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.01 E-value=2.7e+02 Score=25.59 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019080 222 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATN 259 (346)
Q Consensus 222 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 259 (346)
..++|+++++.|...+++|.++..++.+.+..+.+.+.
T Consensus 231 l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~ 268 (357)
T 3rrk_A 231 MKERARLAPEELVGIREEVARLSRESGEALIALWTRAK 268 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444444444443
Done!