BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019081
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 133/266 (50%), Gaps = 32/266 (12%)
Query: 58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
+ V T ++ + A ++K+I G + +D+ AT+ GI V ++ G ++ + A
Sbjct: 46 IIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLS---EAVA 102
Query: 118 ELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTG----ETLLGKTVFILGFGNIGVELA 169
E T+ L++ L+RK +R + + TG E+L GK V ILG G IG +A
Sbjct: 103 EFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIA 162
Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
+RL PFGVK+ W+ H +V+ + K + DI E K+D+V
Sbjct: 163 RRLIPFGVKLY----YWSRHRKVNVEKEL--------------KARYMDIDELLEKSDIV 204
Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
+ L L + T I+N+ + ++ G LVNI RG L+D +A+ ++ G L G DV
Sbjct: 205 ILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263
Query: 290 TEPFDPNDPILKFK-NVLITPHVGGV 314
EP ++ + K++ ++TPH G+
Sbjct: 264 KEPVREHE-LFKYEWETVLTPHYAGL 288
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 33/272 (12%)
Query: 77 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
+K+I VG++ + ++ + GI+V P +T + AEL + L+L R+ E
Sbjct: 77 LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 130
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187
AIE+ K G T G L TV I+G G IG +A+RL+PFGV + + T R
Sbjct: 131 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPR 190
Query: 188 SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF 247
Q+ ++ E A+++D +V SL T G+ NK F
Sbjct: 191 PEEAAEFQAEFVSTP------------------ELAAQSDFIVVACSLTPATEGLCNKDF 232
Query: 248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLI 307
MK+ ++ +NI+RG +++ + + L G + G+DV EP N P+L KN +I
Sbjct: 233 FQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVI 292
Query: 308 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 339
PH+G T + +M+ + + L G P+
Sbjct: 293 LPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 324
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 25/279 (8%)
Query: 58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
L V +D+ ++ A ++K++ + GVGL+ VD++AAT G+ V P T N S A
Sbjct: 47 LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 103
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
E + L+L R+ ++ + K +G + GKTV ++G G IG +A+R+ F
Sbjct: 104 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 163
Query: 176 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235
G ++A + S +++ L ++ +DDL+ ++AD + L
Sbjct: 164 GAYVVAYD-PYVS----PARAAQLGIELLSLDDLL-------------ARADFISVHLPK 205
Query: 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 295
+TAG+++K L+ K G ++VN ARGGL+D A+A + GH+ G+DV TEP
Sbjct: 206 TPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT- 264
Query: 296 NDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQL 333
+ P+ + V++TPH+G T E R+ V V L L
Sbjct: 265 DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 303
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 25/279 (8%)
Query: 58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
L V +D+ ++ A ++K++ + GVGL+ VD++AAT G+ V P T N S A
Sbjct: 48 LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 104
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
E + L+L R+ ++ + K +G + GKTV ++G G IG +A+R+ F
Sbjct: 105 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 164
Query: 176 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235
G ++A + S +++ L ++ +DDL+ ++AD + L
Sbjct: 165 GAYVVAYD-PYVS----PARAAQLGIELLSLDDLL-------------ARADFISVHLPK 206
Query: 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 295
+TAG+++K L+ K G ++VN ARGGL+D A+A + GH+ G+DV TEP
Sbjct: 207 TPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT- 265
Query: 296 NDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQL 333
+ P+ + V++TPH+G T E R+ V V L L
Sbjct: 266 DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 304
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 33/271 (12%)
Query: 77 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
+K+I VG++ + ++ + GI+V P +T + AEL + L+L R+ E
Sbjct: 75 LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 128
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187
AIE+ K G T G L TV I+G G IG +A+RL+PFGV + + T R
Sbjct: 129 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPR 188
Query: 188 SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF 247
Q+ ++ E A+++D +V SL T G+ NK F
Sbjct: 189 PEEAAEFQAEFVSTP------------------ELAAQSDFIVVACSLTPATEGLCNKDF 230
Query: 248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLI 307
K+ ++ +NI+RG +++ + + L G + G+DV EP N P+L KN +I
Sbjct: 231 FQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVI 290
Query: 308 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 338
PH+G T + + + + + L G P
Sbjct: 291 LPHIGSATHRTRNTXSLLAANNLLAGLRGEP 321
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 140/291 (48%), Gaps = 32/291 (10%)
Query: 58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
L V ++ ++ I+ A +++++ + G G++ VD+ AATR GI V P GN+ S A
Sbjct: 71 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 127
Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
ELT +++ L R+ + ++ E+KK G L GKT+ ILG G IG E+A R+
Sbjct: 128 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 184
Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
+ FG+K I + S L + E+I+ D +
Sbjct: 185 QSFGMKTIGYDPIISPEVSASFGVQQLPL---------------EEIWPL---CDFITVH 226
Query: 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292
L T G++N + + KKG +VN ARGG++D A+ L+ G G +DV EP
Sbjct: 227 TPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP 286
Query: 293 FDPND-PILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342
P D ++ +NV+ PH+G T+ + + + + + G LTG+
Sbjct: 287 --PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGV 335
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 27/255 (10%)
Query: 65 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
++ I A ++K+I + GVGL+ +D+ AA GI+V P ++ S AEL + LM
Sbjct: 55 KVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLM 111
Query: 125 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
+ RK +MR + KK + G L GKT+ I+GFG IG ++AK G+ I+
Sbjct: 112 FSVARKIAFADRKMREGVWAKKEAM--GIELEGKTIGIIGFGRIGYQVAKIANALGMNIL 169
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
+ + A V +D + ++DVV + L + T
Sbjct: 170 L-------YDPYPNEERAKEVNGKFVD-----------LETLLKESDVVTIHVPLVESTY 211
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 300
++N+ L MKK ++L+N +RG ++D A+ L+ G + G G+DV EP + P+
Sbjct: 212 HLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLT 271
Query: 301 KFKNVLITPHVGGVT 315
KF NV++TPH+G T
Sbjct: 272 KFDNVVLTPHIGAST 286
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 46/273 (16%)
Query: 65 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT------------GN 112
R+D+ + RA +K+I + VG++ VD+ AA GI+V PG +T
Sbjct: 54 RIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAV 113
Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
A E Y GL + + + + T+ ++G G IG +AKR
Sbjct: 114 ARRVVEGAAYARDGLWKAWHPELLLGLDLQG----------LTLGLVGMGRIGQAVAKRA 163
Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
FG++++ R+ L +++L+ E ADVV
Sbjct: 164 LAFGMRVVYHART----------PKPLPYPFLSLEELLKE-------------ADVVSLH 200
Query: 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292
L +T ++N+ L +MK+G++L+N ARG L+D EA+ L GHL G G+DV EP
Sbjct: 201 TPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEP 259
Query: 293 FDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV 325
P P+ N +ITPH+G + MA+V
Sbjct: 260 LPPGHPLYALPNAVITPHIGSAGRTTRERMAEV 292
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 25/285 (8%)
Query: 58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
L + + R+D A +++++ + VG + +DI AT+ GI V P +T A A
Sbjct: 49 LVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLA 108
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT------GETLLGKTVFILGFGNIGVELAKR 171
+ + K + + E KK GV G + GKT+ I+G G IG +AKR
Sbjct: 109 FALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
+ F ++I+ + S ++ L + ++DL+ E +D VV
Sbjct: 169 AKGFNMRIL-----YYSRTRKEEVERELNAEFKPLEDLLRE-------------SDFVVL 210
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
+ L ++T ++N+ L MKK ++L+NIARG ++D A+ L+ G + G G+DV E
Sbjct: 211 AVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270
Query: 292 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
P+ N+ + K NV++TPH+G + + MA++V + G
Sbjct: 271 PY-YNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRG 314
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)
Query: 56 YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
+H + R+D +A ++KL++ GVG + +D++ + G K++ + +VTG N
Sbjct: 70 FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 122
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
S AE + ML L+R I V + GKT+ +G G IG + +
Sbjct: 123 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 182
Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230
RL PF K + A + A V+N I E ++AD+V
Sbjct: 183 RLVPFNPKELLYYDYQALPKDAEEKVGARRVEN---------------IEELVAQADIVT 227
Query: 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 290
L+ T G++NK LS KKG+ LVN ARG + E +A LE G L G G DV +
Sbjct: 228 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 287
Query: 291 EPFDPNDPILKFKNVL-----ITPHVGGVT 315
+P + P +N +TPH G T
Sbjct: 288 QPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 317
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)
Query: 56 YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
+H + R+D +A ++KL++ GVG + +D++ + G K++ + +VTG N
Sbjct: 69 FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 121
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
S AE + ML L+R I V + GKT+ +G G IG + +
Sbjct: 122 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 181
Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230
RL PF K + A + A V+N I E ++AD+V
Sbjct: 182 RLVPFNPKELLYYDYQALPKDAEEKVGARRVEN---------------IEELVAQADIVT 226
Query: 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 290
L+ T G++NK LS KKG+ LVN ARG + E +A LE G L G G DV +
Sbjct: 227 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 286
Query: 291 EPFDPNDPILKFKNVL-----ITPHVGGVT 315
+P + P +N +TPH G T
Sbjct: 287 QPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 136/273 (49%), Gaps = 32/273 (11%)
Query: 54 ANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGN 112
++ H+ +++ +L + AN++ + F VG V++ AA + GI V P N
Sbjct: 57 SSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAP---FSN 113
Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELA 169
S AEL I ++ L+R+ ++ +K + + E + GKT+ I+G+GNIG ++
Sbjct: 114 TRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSRE-VRGKTLGIVGYGNIGSQVG 172
Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
G+ T R + + ++ + A +D+L+ +DVV
Sbjct: 173 NLAESLGM----TVRYYDTSDKLQYGNVKPAAS---LDELL-------------KTSDVV 212
Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
+ +K T+ ++ ++ L MKKG+ L+N ARG +D EA+A L+ GHL G IDV
Sbjct: 213 SLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFP 272
Query: 290 TEPFDPND----PILKFKNVLITPHVGGVTEHS 318
EP + P+ +NV++TPH+GG TE +
Sbjct: 273 VEPASNGERFSTPLQGLENVILTPHIGGSTEEA 305
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 84 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 143
G+G + +D+ AA G+ VA + G N S AE + +L L+R + + +
Sbjct: 100 GIGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEW 156
Query: 144 GVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199
V L GKT+ +G G IG L +RL+PFG ++ R + ++ ++ A
Sbjct: 157 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA-PELEKETGAK 215
Query: 200 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 259
V ED+ E K DV+V + L ++T G+ NK + +KKG L+VN
Sbjct: 216 FV---------------EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 260
Query: 260 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 315
ARG +++ +A+ +E GH+GG DV +P + P N +TPH G T
Sbjct: 261 NARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 84 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 143
G+G + +D+ AA G+ VA + G N S AE + +L L+R + + +
Sbjct: 94 GIGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEW 150
Query: 144 GVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199
V L GKT+ +G G IG L +RL+PFG ++ R + ++ ++ A
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA-PELEKETGAK 209
Query: 200 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 259
V ED+ E K DV+V + L ++T G+ NK + +KKG L+VN
Sbjct: 210 FV---------------EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 254
Query: 260 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 315
ARG +++ +A+ +E GH+GG DV +P + P N +TPH G T
Sbjct: 255 NARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 32/278 (11%)
Query: 67 DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126
D+ I +++++ F VGL+ VD+ G++V P +T + A +L I L+L
Sbjct: 78 DAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVA---DLAIGLILA 134
Query: 127 LLRKQNEMRMAIEQK--KLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
+LR+ E + + K G GK V I+G G IG+ +A+R F I
Sbjct: 135 VLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFS 194
Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
RS ++ + S + E AS +D++V L +T I+
Sbjct: 195 RSKKPNTNYTYYGS---------------------VVELASNSDILVVACPLTPETTHII 233
Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
N+ + ++ +L+NI RG +D + L G LGG G+DV EP P + + +
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLE 292
Query: 304 NVLITPHVGGVTEHSYRSMAK-VVGDVALQLH-AGTPL 339
NV++ PHVG T + + MA VVG+ L+ H +G PL
Sbjct: 293 NVVLLPHVGSGTVETRKVMADLVVGN--LEAHFSGKPL 328
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 125/270 (46%), Gaps = 30/270 (11%)
Query: 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
T+ L + + +++I++ G G + VDI AA GI V IP + A+ TI
Sbjct: 56 TITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIP---SAAVEETADSTIC 112
Query: 123 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173
+L L R+ + A +EQ + + G+T+ ++GFG G +A R +
Sbjct: 113 HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAK 172
Query: 174 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233
FG +I + + Q + S + + DL+ + C V + C
Sbjct: 173 AFGFSVI----FYDPYLQDGIERSLGVQRVYTLQDLLYQSDC------------VSLHC- 215
Query: 234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF 293
+LN+ ++N + M++G+ LVN ARGGL+D +A+A L+ G + G +DV +EPF
Sbjct: 216 NLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPF 275
Query: 294 D-PNDPILKFKNVLITPHVGGVTEHSYRSM 322
P+ N++ TPH +E + M
Sbjct: 276 SFAQGPLKDAPNLICTPHTAWYSEQASLEM 305
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 120/271 (44%), Gaps = 29/271 (10%)
Query: 77 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
+K I + +G + +D++A GIKV P VT + AE+ + L+LG R+ E
Sbjct: 68 IKCISTYSIGFDHIDLDACKARGIKVGNAPHGVT---VATAEIAMLLLLGSARRAGEGEK 124
Query: 137 AIEQKKL--GVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--IATKRSWASH 189
I + P GE L KT+ I GFG+IG LAKR + F + I T R+ +S
Sbjct: 125 MIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA-SSS 183
Query: 190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 249
+ S Q++ H+ + S + +T NK+ +
Sbjct: 184 DEASYQAT-----------------FHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIK 226
Query: 250 SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP 309
S+ +G+++VN ARG L+D E + LE G L G DV EP + N+ N + P
Sbjct: 227 SLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFP 285
Query: 310 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 340
H+G + MA D+ L G ++
Sbjct: 286 HIGSAATQAREDMAHQANDLIDALFGGADMS 316
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 40/291 (13%)
Query: 66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
L + I+ A ++ I F +G VD++AA + GI V P N S AEL I +L
Sbjct: 65 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 121
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
LLR E + KL + E GK + I+G+G+IG +L G+ +
Sbjct: 122 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYFY 180
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
I K + +QV S L + +DVV + N
Sbjct: 181 DIENKLPLGNATQVQHLSDLL------------------------NMSDVVSLHVPENPS 216
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
T ++ +S MK GSLL+N +RG ++D A+A L HL G IDV TEP +D
Sbjct: 217 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 276
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
P+ +F NVL+TPH+GG T+ + ++ +V G + G+ L+ + F
Sbjct: 277 FTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 40/291 (13%)
Query: 66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
L + I+ A ++ I F +G VD++AA + GI V P N S AEL I +L
Sbjct: 65 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 121
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
LLR E + KL + E GK + I+G+G+IG +L G+ +
Sbjct: 122 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYFY 180
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
I K + +QV S L + +DVV + N
Sbjct: 181 DIENKLPLGNATQVQHLSDLL------------------------NMSDVVSLHVPENPS 216
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
T ++ +S MK GSLL+N +RG ++D A+A L HL G IDV TEP +D
Sbjct: 217 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 276
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
P+ +F NVL+TPH+GG T+ + ++ +V G + G+ L+ + F
Sbjct: 277 FTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 133/279 (47%), Gaps = 34/279 (12%)
Query: 55 NYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 113
NY + VV++ ++ + I + ++K+I + G+GL+ +D A + IKV PG T
Sbjct: 46 NYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTD-- 103
Query: 114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAK 170
S ELTI LM+ RK M ++ K G+ G L GKT+ I+GFG IG ++
Sbjct: 104 -SAVELTIGLMIAAARK---MYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGI 159
Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230
G+K++A + A++++ E +DV+
Sbjct: 160 IANAMGMKVLAYDILDIREKAEKINAKAVSLE------------------ELLKNSDVIS 201
Query: 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 290
++++K I++ MK ++VN +R ++ +A+ Y++ G + DV W
Sbjct: 202 LHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWN 261
Query: 291 EPFDPND----PILKFKNVLITPHVGGVTEHSYRSMAKV 325
EP P + +LK + V++T H+G T+ + + +A++
Sbjct: 262 EP--PKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEM 298
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 135/285 (47%), Gaps = 25/285 (8%)
Query: 58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
L + R+D A +++++ + VG + +DI AT+ GI V P +T A A
Sbjct: 49 LVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLA 108
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT------GETLLGKTVFILGFGNIGVELAKR 171
+ + K + + E KK GV G + GKT+ I+G G IG +AKR
Sbjct: 109 FALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
+ F +I+ + S ++ L + ++DL+ E +D VV
Sbjct: 169 AKGFNXRIL-----YYSRTRKEEVERELNAEFKPLEDLLRE-------------SDFVVL 210
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
+ L ++T ++N+ L KK ++L+NIARG ++D A+ L+ G + G G+DV E
Sbjct: 211 AVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270
Query: 292 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
P+ N+ + K NV++TPH+G + + A++V + G
Sbjct: 271 PY-YNEELFKLDNVVLTPHIGSASFGAREGXAELVAKNLIAFKRG 314
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 117/254 (46%), Gaps = 29/254 (11%)
Query: 77 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
+ +I GVG + VD+ A R I V PG + A A+L I L L +LR+ +
Sbjct: 94 LGIIAINGVGTDKVDLARARRRNIDVTTTPGVL---ADDVADLGIALXLAVLRRVGDGDR 150
Query: 137 AIEQKKLG----VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
+ + + +P G + GK + +LG G IG LA R FG + R W
Sbjct: 151 LVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSV----RYW------ 200
Query: 193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 252
S L+ + I H+ + A +DV+ C++ + T IV+ S L ++
Sbjct: 201 --NRSTLSGVDWI---------AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALG 249
Query: 253 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 312
++VN+ARG ++D +A+ L+ G + G G+DV EP ++ N ++ PH G
Sbjct: 250 PEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSE-FHTTPNTVLXPHQG 308
Query: 313 GVTEHSYRSMAKVV 326
T + + K+V
Sbjct: 309 SATVETRXAXGKLV 322
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 129/291 (44%), Gaps = 40/291 (13%)
Query: 66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
L + I+ A ++ I F +G VD++AA + GI V P N S AEL I +L
Sbjct: 59 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 115
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
LLR E + KL + E GK + I+G+G+IG +L G +
Sbjct: 116 LLLRGVPEANAKAHRGVGNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGXYVYFY 174
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
I K + +QV S L + +DVV + N
Sbjct: 175 DIENKLPLGNATQVQHLSDLL------------------------NXSDVVSLHVPENPS 210
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
T +S K GSLL+N +RG ++D A+A L HL G IDV TEP +D
Sbjct: 211 TKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 270
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
P+ +F NVL+TPH+GG T+ + ++ +V G + G+ L+ + F
Sbjct: 271 FTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 321
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 132/291 (45%), Gaps = 40/291 (13%)
Query: 66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
L + I+ A ++ I F +G VD++AA + GI V P N S AEL I +L
Sbjct: 64 LTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 120
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
LLR E + KL + E GK + I+G+G+IG +L G+ +
Sbjct: 121 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYFY 179
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
I K + +QV S L + +DVV + N
Sbjct: 180 DIENKLPLGNATQVQHLSDLL------------------------NMSDVVSLHVPENPS 215
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
T ++ +S MK GSLL+N +RG ++D A+ L HL G IDV TEP +D
Sbjct: 216 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP 275
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
P+ +F NVL+TPH+GG T+ + ++ +V G + G+ L+ + F
Sbjct: 276 FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 326
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 24/267 (8%)
Query: 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
T+ L + + +++I++ G G + +DI +A GI V +P + T ++ C L
Sbjct: 75 TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
+Y L ++ ++EQ + + G+T+ I+G G +G +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 177 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 236
++ + + + + + + DL+ C V + C LN
Sbjct: 195 FNVL----FYDPYLSDGIERALGLQRVSTLQDLLFHSDC------------VTLHC-GLN 237
Query: 237 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-P 295
+ ++N + M++G+ LVN ARGGL+D +A+A L+ G + G +DV +EPF
Sbjct: 238 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
Query: 296 NDPILKFKNVLITPHVGGVTEHSYRSM 322
P+ N++ TPH +E + M
Sbjct: 298 QGPLKDAPNLICTPHAAWYSEQASIEM 324
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 24/267 (8%)
Query: 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
T+ L + + +++I++ G G + +DI +A GI V +P + T ++ C L
Sbjct: 75 TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
+Y L ++ ++EQ + + G+T+ I+G G +G +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 177 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 236
++ + + + + + + DL+ C V + C LN
Sbjct: 195 FNVL----FYDPYLSDGIERALGLQRVSTLQDLLFHSDC------------VTLHC-GLN 237
Query: 237 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-P 295
+ ++N + M++G+ LVN ARGGL+D +A+A L+ G + G +DV +EPF
Sbjct: 238 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
Query: 296 NDPILKFKNVLITPHVGGVTEHSYRSM 322
P+ N++ TPH +E + M
Sbjct: 298 QGPLKDAPNLICTPHAAWYSEQASIEM 324
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 26/268 (9%)
Query: 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
T+ L + + +++I++ G G + +DI +A GI V +P + T ++ C L
Sbjct: 72 TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 131
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
+Y L ++ ++EQ + + G+T+ I+G G +G +A R + FG
Sbjct: 132 NLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 191
Query: 177 VKIIATKRSWASHSQVSCQSSALAVKN-GIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235
++ + + AL ++ + DL+ C V + C L
Sbjct: 192 FNVLFYDPYLSDGVE-----RALGLQRVSTLQDLLFHSDC------------VTLHC-GL 233
Query: 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD- 294
N+ ++N + M++G+ LVN ARGGL+D +A+A L+ G + G +DV +EPF
Sbjct: 234 NEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSF 293
Query: 295 PNDPILKFKNVLITPHVGGVTEHSYRSM 322
P+ N++ TPH +E + M
Sbjct: 294 SQGPLKDAPNLICTPHAAWYSEQASIEM 321
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 118/268 (44%), Gaps = 30/268 (11%)
Query: 58 LCVVKTMRLDSNCISRANQ-MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 116
L V T + + I + +K I VG + +D AA GIKV P DV +A C
Sbjct: 75 LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTP-DVLSDA--C 131
Query: 117 AELTIYLMLGLLRKQNEMRMAIEQKKL--GVPT---GETLLGKTVFILGFGNIGVELAKR 171
AE+ L+L R+ E + PT G L G+ + I G G IG +A R
Sbjct: 132 AEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATR 191
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
R FG+ I R+ SH A++ G I H+ + +D+ +
Sbjct: 192 ARGFGLAIHYHNRTRLSH----------ALEEGAI--------YHDTLDSLLGASDIFLI 233
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
+ G ++ ++ + +G++++NI+RG L++ +A+ L HL G+DV E
Sbjct: 234 AAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293
Query: 292 P-FDPNDPILKFKNVLITPHVGGVTEHS 318
P DP N+ +TPH+G T +
Sbjct: 294 PAIDPR--YRSLDNIFLTPHIGSATHET 319
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 128/291 (43%), Gaps = 40/291 (13%)
Query: 66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
L + I+ A ++ I F +G VD++AA + GI V P N S AEL I +L
Sbjct: 65 LTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 121
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
LLR E + KL + E GK + I+G+G+IG +L G +
Sbjct: 122 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGXYVYFY 180
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
I K + +QV S L + +DVV + N
Sbjct: 181 DIENKLPLGNATQVQHLSDLL------------------------NXSDVVSLHVPENPS 216
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
T +S K GSLL+N +RG ++D A+ L HL G IDV TEP +D
Sbjct: 217 TKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP 276
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
P+ +F NVL+TPH+GG T+ + ++ +V G + G+ L+ + F
Sbjct: 277 FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 24/267 (8%)
Query: 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
T+ L + + +++I++ G G + +DI +A GI V +P + T ++ C L
Sbjct: 75 TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
+Y L ++ ++EQ + + G+T+ I+G +G +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFG 194
Query: 177 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 236
++ + + + + + + DL+ C V + C LN
Sbjct: 195 FNVL----FYDPYLSDGIERALGLQRVSTLQDLLFHSDC------------VTLHC-GLN 237
Query: 237 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-P 295
+ ++N + M++G+ LVN ARGGL+D +A+A L+ G + G +DV +EPF
Sbjct: 238 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
Query: 296 NDPILKFKNVLITPHVGGVTEHSYRSM 322
P+ N++ TPH +E + M
Sbjct: 298 QGPLKDAPNLICTPHAAWYSEQASIEM 324
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 71 ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
I++A +KL + G+G + VD+ +A + VA + N+ S AE + ++L L+R
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 164
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
N + +K G V L V + G IG+ + +RL PF V + T R
Sbjct: 165 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 223
Query: 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN 244
H L + ED++ DVV L+ +T ++N
Sbjct: 224 ----HRLPESVEKELNLT---------WHATREDMYPVC---DVVTLNCPLHPETEHMIN 267
Query: 245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304
L K+G+ +VN ARG L D +A+A LE G L G DV + +P + P
Sbjct: 268 DETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 327
Query: 305 VLITPHVGGVT 315
+TPH+ G T
Sbjct: 328 NGMTPHISGTT 338
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 51/272 (18%)
Query: 73 RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
A +K + VG + +D+ A + GI+++ +P + A+ AE + L LLR
Sbjct: 65 HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMG 121
Query: 133 EMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189
+++ ++ +K G G+ L +TV ++G G+IG K + FG K+IA
Sbjct: 122 KVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAY------- 174
Query: 190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------KADVVVCCLSLNKQTAGIV 243
D KG H D F++ S ++DV+ + +Q I+
Sbjct: 175 ------------------DPYPMKGDHPD-FDYVSLEDLFKQSDVIDLHVPGIEQNTHII 215
Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP-------- 295
N++ + MK G++++N AR L+D +A+ L+ G L G+GID E D
Sbjct: 216 NEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGS 275
Query: 296 -NDP----ILKFKNVLITPHVGGVTEHSYRSM 322
DP +L NV+++PH+ TE + +M
Sbjct: 276 FKDPLWDELLGMPNVVLSPHIAYYTETAVHNM 307
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 110/256 (42%), Gaps = 27/256 (10%)
Query: 66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
L I++A +KL + G+G + VD+ +A + VA + N+ S AE + ++L
Sbjct: 104 LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMIL 160
Query: 126 GLLRKQNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
L+R N + +K G V L V + G IG+ + +RL PF V +
Sbjct: 161 SLVR--NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 218
Query: 180 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
T R H L + ED++ DVV L+ +T
Sbjct: 219 HYTDR----HRLPESVEKELNLT---------WHATREDMYPVC---DVVTLNCPLHPET 262
Query: 240 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 299
++N L K+G+ +VN ARG L D +A+A LE G L G DV + +P + P
Sbjct: 263 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPW 322
Query: 300 LKFKNVLITPHVGGVT 315
+TPH+ G T
Sbjct: 323 RTMPYNGMTPHISGTT 338
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 46/275 (16%)
Query: 65 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
+L +S+ ++KLI VG + +D++ + GI V IP + S AE T +
Sbjct: 53 KLTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPA---YSPESVAEHTFAXI 109
Query: 125 LGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKI 179
L L+++ R+ KKL +L + T+ ++G G IG +A FG K+
Sbjct: 110 LTLVKRLK--RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKV 167
Query: 180 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFASKADVVVCCLSLNKQ 238
+ C VK +DL EKGC + + E ++DV+ + K+
Sbjct: 168 L-------------CYD---VVKR---EDL-KEKGCVYTSLDELLKESDVISLHVPYTKE 207
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF----- 293
T +N+ +S K G L+N ARG ++D +A+ + G GLG+DV E
Sbjct: 208 THHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKK 267
Query: 294 -------DPNDPILKF---KNVLITPHVGGVTEHS 318
D N IL+ NV+ITPH+ T+ S
Sbjct: 268 YTEGKATDKNLKILELACKDNVIITPHIAYYTDKS 302
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 71 ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
I++A +KL + G+G + VD+ +A + VA + N+ S AE + ++L L+R
Sbjct: 108 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 163
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
N + +K G V L V + G IG+ + +RL PF V + T R
Sbjct: 164 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222
Query: 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN 244
H L + ED++ DVV L+ +T ++N
Sbjct: 223 ----HRLPESVEKELNLT---------WHATREDMYPVC---DVVTLNCPLHPETEHMIN 266
Query: 245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304
L K+G+ +VN ARG L D +A+A LE G L G DV + +P + P
Sbjct: 267 DETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 326
Query: 305 VLITPHVGGVT 315
+TPH+ G T
Sbjct: 327 NGMTPHISGTT 337
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 23/254 (9%)
Query: 66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
L + I++A ++KL + G+G + VD+ AA I VA + N+ S AE + ++L
Sbjct: 104 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 160
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
GL+R + R V + G V + G IG+ + + L PF + +
Sbjct: 161 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 220
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
T R H L + ED++ DVV L+ +T
Sbjct: 221 TDR----HRLPEAVEKELNLT---------WHATREDMY---GACDVVTLNCPLHPETEH 264
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 301
++N L K+G+ LVN ARG L D +AI LE G L G DV + +P + P
Sbjct: 265 MINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT 324
Query: 302 FKNVLITPHVGGVT 315
+ +TPH+ G +
Sbjct: 325 MPHNGMTPHISGTS 338
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 23/254 (9%)
Query: 66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
L + I++A ++KL + G+G + VD+ AA I VA + N+ S AE + ++L
Sbjct: 103 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 159
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
GL+R + R V + G V + G IG+ + + L PF + +
Sbjct: 160 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 219
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
T R H L + ED++ DVV L+ +T
Sbjct: 220 TDR----HRLPEAVEKELNLT---------WHATREDMY---GACDVVTLNCPLHPETEH 263
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 301
++N L K+G+ LVN ARG L D +AI LE G L G DV + +P + P
Sbjct: 264 MINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT 323
Query: 302 FKNVLITPHVGGVT 315
+ +TPH+ G +
Sbjct: 324 MPHNGMTPHISGTS 337
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 65 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
R+D++ + ++++I G + D++A T G+ + +P +T AEL I L
Sbjct: 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 125 LGLLRKQNEMRMAIEQKKL--GVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
+GL R + K P G L TV LG G IG+ +A RL+ +G +
Sbjct: 113 VGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL- 171
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
+ + + + G+ + C E FAS +D ++ L LN T
Sbjct: 172 -------QYHEAKALDTQTEQRLGL-----RQVACSE---LFAS-SDFILLALPLNADTL 215
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
+VN L+ ++ G+LLVN RG ++D A+ LE G LGG DV W P
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
DP +L N L TPH+G + + LQ AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 65 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
R+D++ + ++++I G + D++A T G+ + +P +T AEL I L
Sbjct: 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 125 LGLLRKQNEMRMAIEQKKL--GVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
+GL R + K P G L TV LG G IG+ +A RL+ +G +
Sbjct: 113 VGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL- 171
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
+ + + + G+ + C E FAS +D ++ L LN T
Sbjct: 172 -------QYHEAKALDTQTEQRLGL-----RQVACSE---LFAS-SDFILLALPLNADTL 215
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
+VN L+ ++ G+LLVN RG ++D A+ LE G LGG DV W P
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
DP +L N L TPH+G + + LQ AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 31/283 (10%)
Query: 65 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
R+D++ + ++++I G + D++A T G+ + +P +T AEL I L
Sbjct: 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 125 LGLLRKQNEMRMAIE--QKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
+GL R + Q + P G L TV LG G IG+ +A RL+ +G
Sbjct: 113 VGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWG---- 168
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
AT + A + + L ++ + C E FAS +D ++ L LN T
Sbjct: 169 ATLQYHARKALDTQTEQRLGLR---------QVACSE---LFAS-SDFILLALPLNADTL 215
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
+VN L+ ++ G+LLVN RG ++D A+ LE G LGG DV W P
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
DP +L N L TPH+G + + LQ AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 31/283 (10%)
Query: 65 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
R+D++ + ++++I G + D++A T G+ + +P +T AEL I L
Sbjct: 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 125 LGLLRKQNEMRMAIE--QKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
+GL R + Q + P G L TV LG G IG+ +A RL+ +G
Sbjct: 113 VGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWG---- 168
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
AT + A + + L ++ + C E FAS +D ++ L LN T
Sbjct: 169 ATLQYHARKALDTQTEQRLGLR---------QVACSE---LFAS-SDFILLALPLNADTL 215
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
+VN L+ ++ G+LLVN RG ++D A+ LE G LGG DV W P
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
DP +L N L TPH+G + + LQ AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 31/283 (10%)
Query: 65 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
R+D++ + ++++I G + D++A T G+ + +P +T AEL I L
Sbjct: 57 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 113
Query: 125 LGLLRKQNEMRMAIE--QKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
+GL R + Q + P G L TV LG G IG+ A RL+ +G
Sbjct: 114 VGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWG---- 169
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
AT + A+ + + L ++ + C E FAS +D ++ L LN T
Sbjct: 170 ATLQYHAAKALDTQTEQRLGLR---------QVACSE---LFAS-SDFILLALPLNADTL 216
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
+VN L+ ++ G+LLVN RG ++D A+ LE G LGG DV W P
Sbjct: 217 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQ 276
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
DP +L N L TPH+G + + LQ AG
Sbjct: 277 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 319
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 41/273 (15%)
Query: 65 RLDSNCISRANQMKLIMQFG-VGLEG---VDINAATRCGIKVARIPGDVTGNAASCAELT 120
R+ + R ++K+I Q G V + +D+ A T G+ V + G+ + AELT
Sbjct: 60 RVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVL----EGKGSPVAPAELT 115
Query: 121 IYLMLGLLRK--------------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV 166
L++ R+ Q+ ++ G+ G L G+T+ I G+G IG
Sbjct: 116 WALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGI--GRVLKGQTLGIFGYGKIGQ 173
Query: 167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226
+A R FG+ ++ R +S+ ++ AV + +FE ++
Sbjct: 174 LVAGYGRAFGMNVLVWGRE---NSKERARADGFAVAE-----------SKDALFE---QS 216
Query: 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID 286
DV+ L LN +T I+ + L+ MK +L VN +R L++ + L G G ID
Sbjct: 217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276
Query: 287 VAWTEPFDPNDPILKFKNVLITPHVGGVTEHSY 319
V TEP +L+ +N + TPH+G V SY
Sbjct: 277 VFETEPILQGHTLLRMENCICTPHIGYVERESY 309
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 66 LDSNCISRANQMKLIMQFGV--------GLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
L NC + + + + GV G + +D A G +A +P + + A
Sbjct: 51 LRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVP---RYSPNAIA 107
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRP 174
EL + + LLR +K V + + TV ++G G IG A+
Sbjct: 108 ELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG 167
Query: 175 FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234
G +I + C +L E K+D++
Sbjct: 168 MGATVIGEDVFEIKGIEDYCTQVSLD--------------------EVLEKSDIITIHAP 207
Query: 235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP-- 292
K+ +V + FL MK G++LVN ARG L+D EA+ +E G LGG G DV E
Sbjct: 208 YIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASV 267
Query: 293 FDPN-------DPILK-----FKNVLITPHVGGVTEHSYRSMAKV 325
F + +P+ + + VLITPH+G T+ + ++M +V
Sbjct: 268 FGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEV 312
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 23/245 (9%)
Query: 75 NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
NQ+K + G++ + + A G+ VA G +A + +E + ML ++R +
Sbjct: 60 NQLKFVQVISAGVDYLPLKALQAAGVVVANTSGI---HADAISESVLAAMLSVVRGYHAA 116
Query: 135 RMAIE-QKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
+ ++ +P T TL G+ + I G G IG LA + G+ +I +
Sbjct: 117 WLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT------- 169
Query: 193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 252
G D E + + A+ +V L L T + + K
Sbjct: 170 -----------GHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTK 218
Query: 253 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 312
+ +L+NI RG +D A+ L+ L +DV EP + P+ + +VLITPH+
Sbjct: 219 QQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHIS 278
Query: 313 GVTEH 317
G H
Sbjct: 279 GQIAH 283
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 29/272 (10%)
Query: 76 QMKLIMQFGVGLEGV--DINAATR---CGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
++K + G G++ + +NA I + R+ + TG E + +L R+
Sbjct: 59 RLKAVFVLGAGVDAILSKLNAHPEXLDASIPLFRL--EDTGXGLQXQEYAVSQVLHWFRR 116
Query: 131 QNEMRMAIEQKKLGVPTGE-TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189
++ + A++ + L P E T +V I G G +G ++A+ L+ +G + R W S
Sbjct: 117 FDDYQ-ALKNQALWKPLPEYTREEFSVGIXGAGVLGAKVAESLQAWGFPL----RCW-SR 170
Query: 190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 249
S+ S V+ E++ F ++ V++ L QT GI+N L
Sbjct: 171 SRKSWPG-------------VESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLD 217
Query: 250 SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP 309
+ G+ ++N+ARG + + L+ G L G +DV EP P+ + V TP
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWRHPRVAXTP 277
Query: 310 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG 341
H+ VT + + QL G P+TG
Sbjct: 278 HIAAVTRPA--EAIDYISRTITQLEKGEPVTG 307
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 33/259 (12%)
Query: 57 HLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCG-----IKVARIPGDVTG 111
H+ + + R +++AN++ F GVD+ RC V I G +
Sbjct: 49 HILMAEPARAKP-LLAKANKLSW---FQSTYAGVDVLLDARCRRDYQLTNVRGIFGPLMS 104
Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
L++ L L R+Q + R+ G L G+T+ ILG G+IG +A
Sbjct: 105 EYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQG------LKGRTLLILGTGSIGQHIAHT 158
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
+ FG+K++ RS + Q L N ++ ++ADV+V
Sbjct: 159 GKHFGMKVLGVSRSGRERAGFD-QVYQLPALNKML-----------------AQADVIVS 200
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
L ++T + S K G++L N+ RG ++ + L G LG +DV E
Sbjct: 201 VLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260
Query: 292 PFDPNDPILKFKNVLITPH 310
P + P+ N++ITPH
Sbjct: 261 PLPADSPLWGQPNLIITPH 279
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 40/258 (15%)
Query: 85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK-KL 143
VG ++ + + + V +P + + AE+T+ + LLRK E R ++
Sbjct: 79 VGFNTINFDWTKKYNLLVTNVP---VYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDF 135
Query: 144 GVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA 200
P+ + TV ++G G+IG +A+ G K+IA ++ +
Sbjct: 136 TWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFL------ 189
Query: 201 VKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 260
+ D +AD+V L T ++ + L MKK + L+N
Sbjct: 190 --------------TYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINC 235
Query: 261 ARGGLLDYEAIAHYLECGHLGGLGID-----------VAWTEPFDPND--PILKFKNVLI 307
ARG L+D A+ L+ G + G G+D T+ P D + K NV+I
Sbjct: 236 ARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVI 295
Query: 308 TPHVGGVTEHSYRSMAKV 325
TPH TE S R+M ++
Sbjct: 296 TPHSAFYTETSIRNMVQI 313
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 123/267 (46%), Gaps = 40/267 (14%)
Query: 75 NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
+ +K+ G G + +D++A G+ A G G+ A+ ++L +YL+L + R +
Sbjct: 79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRG--AGDTAT-SDLALYLILSVFRLASYS 135
Query: 135 RMAIEQKKLGVP------------TGETLLGKTVFILGFGNIGVELAKR-LRPFGVKIIA 181
A + G P + G + +G G I E+A++ + G+K++
Sbjct: 136 ERA---ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY 192
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
+ A + AL + +D L E A ++D V + K T
Sbjct: 193 YDVAPAD----AETEKALGAER--VDSLE----------ELARRSDCVSVSVPYMKLTHH 236
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN--DPI 299
+++++F ++MK GS +VN ARG ++ +A+ L+ G L G+DV F+PN +
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDV---HEFEPNVSKEL 293
Query: 300 LKFKNVLITPHVGGVTEHSYRSMAKVV 326
++ K+V +T H+GGV ++ ++
Sbjct: 294 IEMKHVTLTTHIGGVAIETFHEFERLT 320
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 37/253 (14%)
Query: 85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM--RMAIEQKK 142
VG++ +D++ A G ++ +P + + AE +LR+ M +MA +
Sbjct: 79 VGVDNIDMDKAKELGFQITNVP---VYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLR 135
Query: 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 202
G + + V ++G G+IG + + FG K+IA ++ L K
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYD---------IFKNPELEKK 186
Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262
+D L +D+++ +ADV+ + ++N ++ MK G ++VN +R
Sbjct: 187 GYYVDSL-------DDLYK---QADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSR 236
Query: 263 GGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPND---PILKFKNVLITP 309
G L+D +A+ L+ G + G +D W P+ ++ NVL+TP
Sbjct: 237 GRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTP 296
Query: 310 HVGGVTEHSYRSM 322
H T H+ R+M
Sbjct: 297 HTAFYTTHAVRNM 309
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 36/265 (13%)
Query: 75 NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
+ +K+ G G + +D++A G+ A G G+ A+ ++L +YL+L + R +
Sbjct: 79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRG--AGDTAT-SDLALYLILSVFRLASYS 135
Query: 135 RMAIEQKKLGVP------------TGETLLGKTVFILGFGNIGVELAKR-LRPFGVKIIA 181
A + G P + G + +G G I E+A++ + G+K++
Sbjct: 136 ERA---ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY 192
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
+ A + AL + +D L E A ++D V + K T
Sbjct: 193 YDVAPAD----AETEKALGAER--VDSLE----------ELARRSDCVSVSVPYMKLTHH 236
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 301
+++++F ++MK GS +VN ARG ++ +A+ L+ G L G+DV EP + +++
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIE 295
Query: 302 FKNVLITPHVGGVTEHSYRSMAKVV 326
K+V +T H+GGV ++ ++
Sbjct: 296 MKHVTLTTHIGGVAIETFHEFERLT 320
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 36/265 (13%)
Query: 75 NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
+ +K+ G G + +D++A G+ A G G+ A+ ++L +YL+L + R +
Sbjct: 79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRG--AGDTAT-SDLALYLILSVFRLASYS 135
Query: 135 RMAIEQKKLGVP------------TGETLLGKTVFILGFGNIGVELAKR-LRPFGVKIIA 181
A + G P + G + +G G I E+A++ + G+K++
Sbjct: 136 ERA---ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY 192
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
+ A + AL + +D L E A ++D V + K T
Sbjct: 193 YDVAPAD----AETEKALGAER--VDSLE----------ELARRSDCVSVSVPYMKLTHH 236
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 301
+++++F ++MK GS +VN ARG ++ +A+ L+ G L G+DV EP + +++
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIE 295
Query: 302 FKNVLITPHVGGVTEHSYRSMAKVV 326
K+V +T H+GGV ++ ++
Sbjct: 296 MKHVTLTTHIGGVAIETFHEFERLT 320
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 41/274 (14%)
Query: 85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL- 143
VG++ +D+ A G ++ +P + + AE +LR+ M + + L
Sbjct: 79 VGVDNIDMAKAKELGFQITNVP---VYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 144 GVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 202
PT G + + V ++G G+IG + + FG K+I ++ L K
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD---------IFRNPELEKK 186
Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262
+D L +D+++ +ADV+ + ++N ++ MK+ ++VN++R
Sbjct: 187 GYYVDSL-------DDLYK---QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 263 GGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPN---DPILKFKNVLITP 309
G L+D +A+ L+ G + G +DV W P+ ++ NVL+TP
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 310 HVGGVTEHSYRSMAKVVGDVALQL----HAGTPL 339
H T H+ R+M D L+L A TP+
Sbjct: 297 HTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 41/274 (14%)
Query: 85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL- 143
VG++ +D+ A G ++ +P + + AE +LR+ M + + L
Sbjct: 79 VGVDNIDMAKAKELGFQITNVP---VYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 144 GVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 202
PT G + + V ++G G+IG + + FG K+I ++ L K
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD---------IFRNPELEKK 186
Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262
+D L +D+++ +ADV+ + ++N ++ MK+ ++VN++R
Sbjct: 187 GYYVDSL-------DDLYK---QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 263 GGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPN---DPILKFKNVLITP 309
G L+D +A+ L+ G + G +DV W P+ ++ NVL+TP
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 310 HVGGVTEHSYRSMAKVVGDVALQL----HAGTPL 339
T H+ R+M D L+L A TP+
Sbjct: 297 KTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 28/225 (12%)
Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKL-----GVPTGETLLGKTVFILGFGNIGVE 167
A AE+ + L L R + +A ++ G + + G + I+GFG++G
Sbjct: 131 AEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKA 190
Query: 168 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227
L + L F +I W S + +NG+ E ED+ +K+D
Sbjct: 191 LRRVLSGFRARIRVFD-PWLPRSXLE--------ENGV------EPASLEDVL---TKSD 232
Query: 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287
+ ++ + + SS ++G+ + ++R ++D++A+ + GH+ DV
Sbjct: 233 FIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DV 291
Query: 288 AWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQ 332
EP + P+ K + + H G + ++ K GD L+
Sbjct: 292 YPEEPLPLDHPVRSLKGFIRSAHRAGALDSAF----KKXGDXVLE 332
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 224 SKADVVVCCLSLNKQ----TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 279
++ADV+ LN+ T ++++ L++++ G+ LVN +RG ++D +A+ LE G
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA 225
Query: 280 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-EHSYRSMAKV 325
+ +DV EP DP L + ++ TPH+ G + E R A++
Sbjct: 226 DLEVALDVWEGEP--QADPELAARCLIATPHIAGYSLEGKLRGTAQI 270
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 23/162 (14%)
Query: 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE 212
G+ V +LG G IG + K L G ++ R+ + N + + L
Sbjct: 124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT--------PKEGPWRFTNSLEEAL--- 172
Query: 213 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 272
+A VC L LNK T G+V L+ + ++ VN+ R +LD + +
Sbjct: 173 -----------REARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVL 221
Query: 273 HYLECGHLGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGG 313
L+ DV W F + NV+ TP V G
Sbjct: 222 RILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 263
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID 207
G +L +T+ I+G GN+G L RL G++ + A+
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG----------------- 156
Query: 208 DLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKSFLSSMKKGSLLVNIARG 263
++G + E +ADV+ L K +T + +++ + +K G++L+N RG
Sbjct: 157 ----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212
Query: 264 GLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 315
++D A+ L G + +DV EP D N +L+ ++ T H+ G T
Sbjct: 213 PVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVDI-GTSHIAGYT 262
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 114/269 (42%), Gaps = 57/269 (21%)
Query: 76 QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT--GNAA----SCAELTIYLMLGLLR 129
+ K I G++ +D+N IP +V NA S AE L+L +
Sbjct: 49 RTKXIQAISAGVDHIDVNG----------IPENVVLCSNAGAYSISVAEHAFALLLAHAK 98
Query: 130 KQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
E E K G+ PT L GK + ILG+G IG +A + FG ++IA RS
Sbjct: 99 NILENN---ELXKAGIFRQSPT-TLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRS 154
Query: 186 WASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNK 245
+V + D++ E D+F ++D V+ + L +T G VN
Sbjct: 155 --------------SVDQNV--DVISESPA--DLFR---QSDFVLIAIPLTDKTRGXVNS 193
Query: 246 SFLSSMKKGSLLVNIARGGLLDY-EAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304
L++ +K +VN+AR ++ + I E + L DV W EP +N
Sbjct: 194 RLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLS-DVWWNEPEITE---TNLRN 249
Query: 305 VLITPHVGGVTEHSYRSMAKVVGDVALQL 333
+++PHV G + + D+A+QL
Sbjct: 250 AILSPHVAG-------GXSGEIXDIAIQL 271
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 149 ETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRS 185
+TL GKT+ I G+GN G LAK + FG+K++A S
Sbjct: 208 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS 245
>pdb|3B1F|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From
Streptococcus Mutans
Length = 290
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 154 KTVFILGFGNIGVELA---KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV 210
KT++I G G IG LA KR P KI+ R S +S +A++ GI+D+
Sbjct: 7 KTIYIAGLGLIGASLALGIKRDHPH-YKIVGYNR--------SDRSRDIALERGIVDEAT 57
Query: 211 DEKGCHEDIFEFASKADVVVCCLSLNK 237
D FA+ ADV++ + + K
Sbjct: 58 ------ADFKVFAALADVIILAVPIKK 78
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK---------IIATKRSWASHSQVSCQSSAL 199
+TL+GKTV + GFGN+ AK+L G K I + +++
Sbjct: 226 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMR 285
Query: 200 AVKNGIIDDLVDEKGCHEDIFE--FASKADVVVCCLSLN 236
A + D D+ G E + K D+++ C + N
Sbjct: 286 ASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQN 324
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK---------IIATKRSWASHSQVSCQSSAL 199
+TL+GKTV + GFGN+ AK+L G K I + +++
Sbjct: 226 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMR 285
Query: 200 AVKNGIIDDLVDEKGCHEDIFE--FASKADVVVCCLSLN 236
A + D D+ G E + K D+++ C + N
Sbjct: 286 ASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQN 324
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK---------IIATKRSWASHSQVSCQSSAL 199
+TL+GKTV + GFGN+ AK+L G K I + +++
Sbjct: 226 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMR 285
Query: 200 AVKNGIIDDLVDEKGCHEDIFE--FASKADVVVCCLSLN 236
A + D D+ G E + K D+++ C + N
Sbjct: 286 ASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQN 324
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD 208
+ GKT + G+G++G A LR FG +++ T+ + Q S + +A+ ++ D
Sbjct: 210 IAGKTCCVCGYGDVGKGCAAALRAFGARVVVTEVDPINALQASMEGYQVALVEDVMAD 267
>pdb|3DZB|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From
Streptococcus Thermophilus
pdb|3DZB|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From
Streptococcus Thermophilus
Length = 317
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 150 TLLGKTVFILGFGNIGVELA---KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 206
+L KT++I G G IG LA KR P +I+ R S S +A++ GI+
Sbjct: 2 SLSKKTIYIAGLGLIGGSLALGIKRDHP-DYEILGYNR--------SDYSRNIALERGIV 52
Query: 207 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
D D EFA ADV++ + + + A
Sbjct: 53 DRATG------DFKEFAPLADVIILAVPIKQTXA 80
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 7 SSDKNITRVLFCGPHFPASHNYTKEYLQ 34
S DKN +LFC PH P + K+ LQ
Sbjct: 160 SKDKNNKALLFCSPHNPVGRVWKKDELQ 187
>pdb|1KCF|A Chain A, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
pdb|1KCF|B Chain B, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
Length = 258
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 284 GIDVAWTEPFDPN---DPILKFKNVL---ITPHVGGVTEHSYRSMAKVVGDVALQLH 334
G+D+ WTE F P+ D ++ N L PHV + YRS + + L+++
Sbjct: 80 GLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQRYRSGIATIPEWTLRVN 136
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV 210
+ GKT + G+G++G A LR FG +++ T+ + Q + + + +++D+V
Sbjct: 209 IAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL----LVEDVV 264
Query: 211 DE 212
+E
Sbjct: 265 EE 266
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL-----AV 201
T + GK + G+G++G A+ LR FG ++I T+ + Q + + + A
Sbjct: 206 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEAC 265
Query: 202 KNGIIDDLVDEKGCHEDI----FEFASKADVVVC 231
K G I V GC + I FE K D +VC
Sbjct: 266 KEGNI--FVTTTGCVDIILGRHFE-QMKDDAIVC 296
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL-----AV 201
T + GK + G+G++G A+ LR FG ++I T+ + Q + + + A
Sbjct: 206 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEAC 265
Query: 202 KNGIIDDLVDEKGCHEDI----FEFASKADVVVC 231
K G I V GC + I FE K D +VC
Sbjct: 266 KEGNI--FVTTTGCVDIILGRHFE-QMKDDAIVC 296
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL-----AV 201
T + GK + G+G++G A+ LR FG ++I T+ + Q + + + A
Sbjct: 206 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTTMDEAC 265
Query: 202 KNGIIDDLVDEKGCHEDI----FEFASKADVVVC 231
K G I V GC + I FE K D +VC
Sbjct: 266 KEGNI--FVTTTGCVDIILGRHFE-QMKDDAIVC 296
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
+ GK + G+G++G A+ LR FG ++I T+
Sbjct: 214 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITE 246
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
T + GK + G+G++G A+ LR FG ++I T+
Sbjct: 207 TDVXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITE 243
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIA 181
G L GKT+ I G+GN G +AK + +G+K++A
Sbjct: 206 GMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVA 240
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
T + GK + G+G++G A+ LR FG ++I T+
Sbjct: 207 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITE 243
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
KT + GFGN+G+ + L FG K IA S S
Sbjct: 249 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGS 283
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
KT + GFGN+G+ + L FG K IA S S
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGS 274
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
KT + GFGN+G+ + L FG K IA S S
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGS 274
>pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus Peptide Deformylase
pdb|1LQW|B Chain B, Crystal Structure Of S.Aureus Peptide Deformylase
pdb|2AI9|A Chain A, S.Aureus Polypeptide Deformylase
pdb|2AI9|B Chain B, S.Aureus Polypeptide Deformylase
Length = 183
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
CLS++ AG+V++ ++K + N + L Y AI E HL G V + +
Sbjct: 111 CLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNG----VMFYD 166
Query: 292 PFDPNDPI 299
D N P+
Sbjct: 167 HIDKNHPL 174
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKI 179
K V I+G G IG+ELA LR FG ++
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSEV 192
>pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IIN|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IIN|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IIN|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IJK|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
pdb|4IJK|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
pdb|4IJK|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
pdb|4IJK|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Length = 271
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 153 GKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 211
GK V I G IG E+AK L G+K+ RS A A A+KN + +
Sbjct: 29 GKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNA--------EVADALKNEL-----E 75
Query: 212 EKGCHEDIFEF--ASKADVVVCCLSLNKQTAGI 242
EKG + +F AS++D + ++ + G+
Sbjct: 76 EKGYKAAVIKFDAASESDFIEAIQTIVQSDGGL 108
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 284 GIDVAWTEPFDPNDPILKF 302
I++ WT+PFD N P++++
Sbjct: 35 AINLTWTKPFDGNSPLIRY 53
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
++L GKTV + G GN+ L + L G K+I T
Sbjct: 169 DSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIIT 202
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
KT + GFGN+G+ + L FG K +A S S
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGS 279
>pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus Peptide Deformylase
Length = 184
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
CLS++ AG+V++ ++K + N + L Y AI E HL G V + +
Sbjct: 111 CLSVDDNVAGLVHRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNG----VXFYD 166
Query: 292 PFDPNDPILKFKNVLITPHVGGVTEH 317
D + P + PH V H
Sbjct: 167 HIDKDHP--------LQPHTDAVEVH 184
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
KT + GFGN+G+ + L FG K +A S S
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGS 279
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 153 GKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
GKTV I G GN+G A L G K+IA
Sbjct: 210 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAV 239
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 19/94 (20%)
Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSA 198
+++LG +L KTV ++G G +G +AK L GV+ ++ R++ +++
Sbjct: 159 ERELG-----SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG 213
Query: 199 LAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
AV+ D+LVD +++DVVV
Sbjct: 214 EAVR---FDELVD----------HLARSDVVVSA 234
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 156 VFILGFGNIGVELAKRLRPFGVKIIATKRS 185
+ I G G++G+ELA+RL G ++ +RS
Sbjct: 6 ILIAGCGDLGLELARRLTAQGHEVTGLRRS 35
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
KT + GFGN+G+ + L FG K I S S
Sbjct: 245 KTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGS 279
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 78 KLIMQFGVGLEGVDINAATRCGIKVARIPG--------------DVTGNAASCAELTIYL 123
K I + LE V++ + G +AR+ G V G A + E + +
Sbjct: 14 KQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFENGVMGMAQNLEEDNVGV 73
Query: 124 MLGLLRKQNEMRMAIEQKKLG----VPTGETLLGKTVFILG 160
++ L E+R + K+ G VP GE LLG+ V LG
Sbjct: 74 VI--LGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,699,218
Number of Sequences: 62578
Number of extensions: 375285
Number of successful extensions: 1365
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 114
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)