Query 019081
Match_columns 346
No_of_seqs 288 out of 1734
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:31:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02928 oxidoreductase family 100.0 7.5E-76 1.6E-80 567.4 33.9 334 8-346 14-347 (347)
2 COG0111 SerA Phosphoglycerate 100.0 3.3E-76 7.2E-81 562.8 29.4 306 12-341 3-313 (324)
3 PRK15409 bifunctional glyoxyla 100.0 1.7E-74 3.6E-79 552.7 29.2 305 13-342 3-317 (323)
4 PRK06487 glycerate dehydrogena 100.0 6E-73 1.3E-77 541.5 33.5 302 13-340 1-314 (317)
5 PRK08410 2-hydroxyacid dehydro 100.0 6E-73 1.3E-77 540.1 32.4 299 13-338 1-311 (311)
6 PRK06932 glycerate dehydrogena 100.0 1.6E-72 3.6E-77 537.5 30.4 269 45-338 34-314 (314)
7 COG1052 LdhA Lactate dehydroge 100.0 3.7E-71 8.1E-76 527.7 31.2 273 48-342 37-320 (324)
8 PRK13243 glyoxylate reductase; 100.0 4.1E-70 8.9E-75 525.2 31.9 303 13-342 3-320 (333)
9 PRK11790 D-3-phosphoglycerate 100.0 2.1E-69 4.5E-74 532.7 32.8 308 7-342 5-324 (409)
10 PLN03139 formate dehydrogenase 100.0 3E-69 6.5E-74 524.7 31.9 278 47-345 89-375 (386)
11 PRK07574 formate dehydrogenase 100.0 6.5E-69 1.4E-73 522.7 30.2 276 47-343 82-366 (385)
12 PLN02306 hydroxypyruvate reduc 100.0 7.7E-68 1.7E-72 516.2 32.4 320 11-342 14-352 (386)
13 PRK13581 D-3-phosphoglycerate 100.0 6.4E-67 1.4E-71 530.4 31.5 304 13-342 1-310 (526)
14 TIGR01327 PGDH D-3-phosphoglyc 100.0 1.1E-66 2.3E-71 528.7 30.8 275 45-342 30-309 (525)
15 PRK12480 D-lactate dehydrogena 100.0 2.7E-66 5.9E-71 497.6 29.0 306 12-342 1-328 (330)
16 KOG0068 D-3-phosphoglycerate d 100.0 5.1E-67 1.1E-71 484.3 22.7 300 11-336 5-313 (406)
17 PRK15469 ghrA bifunctional gly 100.0 1.1E-64 2.4E-69 482.8 31.3 299 14-342 2-305 (312)
18 PRK08605 D-lactate dehydrogena 100.0 6E-63 1.3E-67 475.5 31.4 303 14-342 5-330 (332)
19 PRK06436 glycerate dehydrogena 100.0 3.9E-61 8.5E-66 456.1 32.8 253 53-339 32-285 (303)
20 PRK15438 erythronate-4-phospha 100.0 1.3E-60 2.8E-65 462.6 32.2 276 13-338 1-281 (378)
21 PRK00257 erythronate-4-phospha 100.0 2.2E-60 4.9E-65 462.3 32.6 278 13-340 1-284 (381)
22 KOG0069 Glyoxylate/hydroxypyru 100.0 2.8E-61 6.1E-66 455.5 23.8 271 51-342 56-333 (336)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 1.2E-51 2.7E-56 364.0 14.2 174 121-312 1-178 (178)
24 KOG0067 Transcription factor C 100.0 5.2E-32 1.1E-36 254.0 13.0 250 63-341 82-343 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 7.8E-22 1.7E-26 195.2 16.2 170 83-295 198-368 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 3.9E-20 8.4E-25 174.8 13.7 155 66-264 82-243 (287)
27 PF00389 2-Hacid_dh: D-isomer 99.8 1.1E-19 2.4E-24 152.7 9.9 98 15-120 1-101 (133)
28 PLN02494 adenosylhomocysteinas 99.7 1.1E-16 2.5E-21 158.3 9.5 121 149-291 250-373 (477)
29 PRK08306 dipicolinate synthase 99.6 3.2E-15 6.9E-20 142.1 12.8 172 51-262 51-242 (296)
30 TIGR00936 ahcY adenosylhomocys 99.6 3.6E-15 7.8E-20 146.4 8.8 120 149-290 191-312 (406)
31 PRK13403 ketol-acid reductoiso 99.5 1.1E-14 2.3E-19 137.9 6.7 93 149-260 12-105 (335)
32 PRK05476 S-adenosyl-L-homocyst 99.4 1.3E-12 2.8E-17 129.2 9.6 155 83-273 156-312 (425)
33 PF03446 NAD_binding_2: NAD bi 99.3 1.4E-12 3.1E-17 113.2 2.7 115 154-287 2-118 (163)
34 COG2084 MmsB 3-hydroxyisobutyr 99.3 8.9E-12 1.9E-16 116.9 7.7 115 154-287 1-119 (286)
35 PF00670 AdoHcyase_NAD: S-aden 99.3 9.8E-12 2.1E-16 107.0 7.2 105 148-273 18-123 (162)
36 TIGR01505 tartro_sem_red 2-hyd 99.2 1.8E-11 3.8E-16 116.0 7.4 110 155-281 1-113 (291)
37 PRK11559 garR tartronate semia 99.2 3.1E-11 6.6E-16 114.6 7.5 111 154-281 3-116 (296)
38 PRK15461 NADH-dependent gamma- 99.2 5.9E-11 1.3E-15 112.9 8.1 115 154-287 2-119 (296)
39 PRK05479 ketol-acid reductoiso 99.2 4.7E-11 1E-15 114.5 6.8 123 149-299 13-137 (330)
40 PRK12490 6-phosphogluconate de 99.1 1.6E-10 3.4E-15 110.1 9.5 113 155-287 2-118 (299)
41 cd00401 AdoHcyase S-adenosyl-L 99.1 2.7E-10 5.8E-15 112.5 9.0 104 148-273 197-302 (413)
42 PRK09599 6-phosphogluconate de 99.0 7.5E-10 1.6E-14 105.5 9.3 113 155-287 2-118 (301)
43 PLN02256 arogenate dehydrogena 99.0 4.3E-09 9.4E-14 100.4 12.0 135 151-311 34-174 (304)
44 PLN02350 phosphogluconate dehy 99.0 1.2E-09 2.6E-14 110.3 7.6 128 155-292 8-138 (493)
45 PLN02712 arogenate dehydrogena 98.9 1.1E-09 2.3E-14 114.8 6.7 110 148-277 364-476 (667)
46 TIGR00518 alaDH alanine dehydr 98.9 7.8E-09 1.7E-13 101.3 11.6 102 150-261 164-267 (370)
47 PRK15059 tartronate semialdehy 98.9 3.9E-09 8.5E-14 100.2 7.9 113 155-287 2-117 (292)
48 TIGR00872 gnd_rel 6-phosphoglu 98.9 5.7E-09 1.2E-13 99.4 7.9 112 155-287 2-117 (298)
49 PLN02858 fructose-bisphosphate 98.8 6E-09 1.3E-13 116.6 8.8 119 152-287 3-124 (1378)
50 PLN02858 fructose-bisphosphate 98.8 5.3E-09 1.2E-13 117.0 8.2 116 153-287 324-444 (1378)
51 PRK11064 wecC UDP-N-acetyl-D-m 98.8 1.3E-08 2.9E-13 101.2 9.5 149 154-322 4-188 (415)
52 PTZ00142 6-phosphogluconate de 98.8 6.9E-09 1.5E-13 104.5 7.2 121 154-287 2-125 (470)
53 KOG0409 Predicted dehydrogenas 98.8 9.2E-09 2E-13 95.9 6.9 119 150-287 32-154 (327)
54 TIGR01692 HIBADH 3-hydroxyisob 98.8 1E-08 2.2E-13 97.2 6.7 111 158-287 1-114 (288)
55 PRK08655 prephenate dehydrogen 98.8 2.5E-08 5.5E-13 99.8 9.8 133 154-311 1-137 (437)
56 PRK11199 tyrA bifunctional cho 98.8 7.8E-08 1.7E-12 94.5 13.0 81 152-264 97-178 (374)
57 PLN02545 3-hydroxybutyryl-CoA 98.8 3.4E-08 7.4E-13 93.8 10.0 153 154-321 5-167 (295)
58 COG0499 SAM1 S-adenosylhomocys 98.8 1.9E-08 4.1E-13 95.7 8.0 111 150-281 206-318 (420)
59 PRK05225 ketol-acid reductoiso 98.8 6.5E-09 1.4E-13 102.5 4.9 96 149-264 32-133 (487)
60 TIGR00465 ilvC ketol-acid redu 98.8 1.2E-08 2.6E-13 97.8 6.5 96 151-265 1-97 (314)
61 PRK15182 Vi polysaccharide bio 98.8 3.2E-08 7E-13 98.7 9.8 151 154-307 7-173 (425)
62 PRK14619 NAD(P)H-dependent gly 98.8 1.8E-08 4E-13 96.3 7.6 85 152-266 3-87 (308)
63 TIGR00873 gnd 6-phosphoglucona 98.7 1.7E-08 3.8E-13 101.6 7.1 117 155-287 1-122 (467)
64 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 1.6E-07 3.4E-12 84.5 11.0 111 148-282 23-135 (200)
65 PRK07502 cyclohexadienyl dehyd 98.7 8.1E-08 1.7E-12 91.8 9.2 147 153-320 6-161 (307)
66 PRK08818 prephenate dehydrogen 98.7 3E-07 6.5E-12 89.9 13.1 122 152-310 3-130 (370)
67 PRK14189 bifunctional 5,10-met 98.6 4.2E-07 9E-12 85.5 13.0 119 148-324 153-272 (285)
68 PRK07417 arogenate dehydrogena 98.6 9E-08 2E-12 90.3 8.5 133 155-313 2-143 (279)
69 PRK09260 3-hydroxybutyryl-CoA 98.6 1.5E-07 3.2E-12 89.1 9.6 145 154-310 2-155 (288)
70 PLN02712 arogenate dehydrogena 98.6 3.5E-08 7.6E-13 103.4 5.5 95 150-264 49-146 (667)
71 PF07991 IlvN: Acetohydroxy ac 98.6 2.4E-08 5.3E-13 85.7 3.1 90 151-258 2-92 (165)
72 PRK07066 3-hydroxybutyryl-CoA 98.6 3.3E-07 7.2E-12 88.1 10.9 127 154-282 8-139 (321)
73 cd01065 NAD_bind_Shikimate_DH 98.6 2.7E-07 5.9E-12 78.7 9.3 113 150-280 16-133 (155)
74 PRK14194 bifunctional 5,10-met 98.6 1.7E-07 3.6E-12 88.8 8.5 129 148-333 154-285 (301)
75 cd01080 NAD_bind_m-THF_DH_Cycl 98.6 2.8E-07 6.1E-12 80.5 9.0 90 149-282 40-130 (168)
76 TIGR03026 NDP-sugDHase nucleot 98.6 4.4E-07 9.5E-12 90.2 11.6 150 155-308 2-174 (411)
77 PRK06545 prephenate dehydrogen 98.5 2.8E-07 6.1E-12 90.0 9.2 98 154-265 1-99 (359)
78 PF03807 F420_oxidored: NADP o 98.5 3.3E-08 7.1E-13 77.8 1.7 89 155-263 1-96 (96)
79 KOG1370 S-adenosylhomocysteine 98.5 1.5E-07 3.4E-12 87.7 6.4 95 150-265 211-305 (434)
80 PRK08293 3-hydroxybutyryl-CoA 98.5 8.3E-07 1.8E-11 84.0 10.9 154 154-321 4-168 (287)
81 PLN02688 pyrroline-5-carboxyla 98.5 8.7E-07 1.9E-11 82.7 10.4 100 155-276 2-108 (266)
82 PF01488 Shikimate_DH: Shikima 98.5 1.1E-07 2.3E-12 80.2 3.7 103 149-267 8-115 (135)
83 COG0287 TyrA Prephenate dehydr 98.5 9.2E-07 2E-11 83.4 10.1 149 153-322 3-155 (279)
84 PRK08507 prephenate dehydrogen 98.5 9.8E-07 2.1E-11 83.0 10.4 100 155-277 2-103 (275)
85 TIGR00561 pntA NAD(P) transhyd 98.5 4.4E-06 9.5E-11 84.7 15.6 197 54-262 63-285 (511)
86 PRK05808 3-hydroxybutyryl-CoA 98.5 1.3E-06 2.9E-11 82.3 11.1 120 154-276 4-131 (282)
87 PRK15057 UDP-glucose 6-dehydro 98.5 6.5E-07 1.4E-11 88.3 9.2 144 155-307 2-160 (388)
88 PRK07530 3-hydroxybutyryl-CoA 98.4 1.3E-06 2.8E-11 82.8 10.4 154 154-322 5-168 (292)
89 PRK13302 putative L-aspartate 98.4 3.8E-07 8.2E-12 85.8 6.5 107 152-280 5-117 (271)
90 PRK14188 bifunctional 5,10-met 98.4 1.2E-06 2.5E-11 83.1 8.6 80 148-264 153-233 (296)
91 PRK14618 NAD(P)H-dependent gly 98.4 9.9E-07 2.1E-11 85.0 8.4 115 154-277 5-123 (328)
92 COG0686 Ald Alanine dehydrogen 98.4 5.5E-07 1.2E-11 84.5 6.1 103 150-267 165-276 (371)
93 PRK07819 3-hydroxybutyryl-CoA 98.4 1.7E-06 3.7E-11 82.0 9.3 147 154-313 6-162 (286)
94 PRK06035 3-hydroxyacyl-CoA deh 98.4 2.8E-06 6.1E-11 80.5 10.8 134 154-291 4-148 (291)
95 PRK14806 bifunctional cyclohex 98.4 1.8E-06 3.9E-11 92.0 10.3 139 154-313 4-153 (735)
96 PRK14175 bifunctional 5,10-met 98.3 1.9E-06 4E-11 81.3 8.7 80 148-264 153-233 (286)
97 PRK07531 bifunctional 3-hydrox 98.3 2.8E-06 6E-11 86.6 10.6 120 154-277 5-130 (495)
98 COG0677 WecC UDP-N-acetyl-D-ma 98.3 2.9E-06 6.2E-11 82.2 9.7 160 154-321 10-190 (436)
99 PRK12491 pyrroline-5-carboxyla 98.3 7.3E-07 1.6E-11 83.9 5.4 102 154-276 3-110 (272)
100 PRK06130 3-hydroxybutyryl-CoA 98.3 4.5E-06 9.8E-11 79.7 10.6 126 154-282 5-135 (311)
101 PRK05472 redox-sensing transcr 98.3 7E-07 1.5E-11 81.0 4.2 130 117-277 64-201 (213)
102 PRK07679 pyrroline-5-carboxyla 98.2 1.7E-06 3.7E-11 81.6 6.4 106 152-277 2-113 (279)
103 PRK14179 bifunctional 5,10-met 98.2 2.8E-06 6.1E-11 79.9 7.7 123 148-328 153-276 (284)
104 PF01262 AlaDh_PNT_C: Alanine 98.2 1.2E-06 2.7E-11 76.3 5.0 112 149-261 16-139 (168)
105 PRK06129 3-hydroxyacyl-CoA deh 98.2 1E-05 2.2E-10 77.3 11.3 155 154-321 3-166 (308)
106 TIGR01724 hmd_rel H2-forming N 98.2 4.4E-06 9.5E-11 79.3 8.5 97 165-277 32-129 (341)
107 PRK00094 gpsA NAD(P)H-dependen 98.2 1.8E-06 3.9E-11 82.6 5.0 107 154-266 2-110 (325)
108 PRK08268 3-hydroxy-acyl-CoA de 98.2 8.5E-06 1.8E-10 83.2 10.0 134 154-293 8-151 (507)
109 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.2 4E-06 8.7E-11 85.4 7.5 136 153-293 5-149 (503)
110 PF03721 UDPG_MGDP_dh_N: UDP-g 98.2 1.6E-06 3.4E-11 77.0 4.0 151 154-307 1-171 (185)
111 COG1023 Gnd Predicted 6-phosph 98.2 4.2E-06 9.1E-11 76.0 6.6 115 154-288 1-119 (300)
112 PRK09424 pntA NAD(P) transhydr 98.2 1.9E-05 4E-10 80.3 11.8 197 55-262 65-286 (509)
113 TIGR01035 hemA glutamyl-tRNA r 98.1 3E-06 6.6E-11 84.4 5.8 102 150-267 177-283 (417)
114 cd05212 NAD_bind_m-THF_DH_Cycl 98.1 2.8E-05 6E-10 65.9 10.6 80 148-264 23-103 (140)
115 PF10727 Rossmann-like: Rossma 98.1 8E-07 1.7E-11 74.0 1.1 91 152-261 9-104 (127)
116 cd01079 NAD_bind_m-THF_DH NAD 98.1 1.4E-05 3.1E-10 70.9 9.0 96 146-261 55-156 (197)
117 PRK14192 bifunctional 5,10-met 98.1 1.2E-05 2.7E-10 75.9 9.1 80 148-264 154-234 (283)
118 PRK14178 bifunctional 5,10-met 98.1 9.3E-06 2E-10 76.2 7.8 80 148-264 147-227 (279)
119 PRK06476 pyrroline-5-carboxyla 98.1 4.4E-06 9.4E-11 77.8 5.7 101 155-278 2-108 (258)
120 PF02882 THF_DHG_CYH_C: Tetrah 98.1 1.3E-05 2.9E-10 69.3 8.1 81 148-265 31-112 (160)
121 PRK07680 late competence prote 98.1 6.2E-06 1.4E-10 77.4 6.3 101 155-276 2-109 (273)
122 cd05311 NAD_bind_2_malic_enz N 98.1 7.1E-05 1.5E-09 68.5 12.9 160 148-334 20-195 (226)
123 PRK14191 bifunctional 5,10-met 98.1 1.6E-05 3.5E-10 74.8 8.5 122 148-327 152-274 (285)
124 PLN00203 glutamyl-tRNA reducta 98.0 8E-06 1.7E-10 83.3 6.8 102 150-264 263-372 (519)
125 PRK10792 bifunctional 5,10-met 98.0 3.6E-05 7.7E-10 72.5 10.3 80 148-264 154-234 (285)
126 PRK00045 hemA glutamyl-tRNA re 98.0 9.2E-06 2E-10 81.2 5.8 93 150-262 179-281 (423)
127 PRK14176 bifunctional 5,10-met 98.0 3.1E-05 6.7E-10 73.0 8.8 79 148-263 159-238 (287)
128 PRK09287 6-phosphogluconate de 98.0 9.3E-06 2E-10 81.7 5.6 104 164-287 1-113 (459)
129 cd05213 NAD_bind_Glutamyl_tRNA 98.0 9.6E-06 2.1E-10 77.8 5.4 95 151-264 176-276 (311)
130 PRK11880 pyrroline-5-carboxyla 97.9 6.9E-05 1.5E-09 69.9 10.1 100 154-276 3-107 (267)
131 COG2085 Predicted dinucleotide 97.9 2.4E-05 5.2E-10 70.1 6.4 94 154-263 2-95 (211)
132 PRK13304 L-aspartate dehydroge 97.9 1.9E-05 4.2E-10 74.0 6.0 104 154-279 2-113 (265)
133 PRK06928 pyrroline-5-carboxyla 97.9 2.6E-05 5.7E-10 73.5 6.9 104 154-277 2-112 (277)
134 cd05191 NAD_bind_amino_acid_DH 97.9 7.5E-05 1.6E-09 57.7 8.3 67 149-261 19-86 (86)
135 PRK14170 bifunctional 5,10-met 97.9 9E-05 2E-09 69.8 10.3 123 148-328 152-275 (284)
136 PRK14190 bifunctional 5,10-met 97.9 7.5E-05 1.6E-09 70.4 9.7 115 148-320 153-268 (284)
137 PRK14169 bifunctional 5,10-met 97.9 0.00026 5.5E-09 66.7 13.1 123 148-328 151-274 (282)
138 PF01210 NAD_Gly3P_dh_N: NAD-d 97.9 1.3E-05 2.7E-10 69.2 3.9 104 155-264 1-106 (157)
139 cd01078 NAD_bind_H4MPT_DH NADP 97.8 9.2E-05 2E-09 65.9 9.3 111 148-267 23-135 (194)
140 PLN02516 methylenetetrahydrofo 97.8 0.00028 6.1E-09 66.9 12.9 134 148-334 162-297 (299)
141 PRK00258 aroE shikimate 5-dehy 97.8 4.2E-05 9.1E-10 72.2 7.4 103 149-264 119-224 (278)
142 PLN02353 probable UDP-glucose 97.8 0.00023 5E-09 72.0 13.0 150 154-307 2-176 (473)
143 PRK14183 bifunctional 5,10-met 97.8 7.3E-05 1.6E-09 70.3 8.7 80 148-264 152-232 (281)
144 PF02737 3HCDH_N: 3-hydroxyacy 97.8 1.4E-05 2.9E-10 70.7 3.4 118 155-276 1-127 (180)
145 PRK14177 bifunctional 5,10-met 97.8 9.4E-05 2E-09 69.6 9.0 79 148-263 154-233 (284)
146 PRK14166 bifunctional 5,10-met 97.8 9.8E-05 2.1E-09 69.5 8.8 115 148-320 152-267 (282)
147 PRK08229 2-dehydropantoate 2-r 97.8 5.9E-05 1.3E-09 72.8 7.6 122 154-282 3-127 (341)
148 PRK14186 bifunctional 5,10-met 97.8 0.00011 2.3E-09 69.7 9.0 127 148-328 153-280 (297)
149 TIGR01546 GAPDH-II_archae glyc 97.8 5.6E-05 1.2E-09 72.9 7.1 103 156-261 1-108 (333)
150 PRK14172 bifunctional 5,10-met 97.8 0.00019 4E-09 67.5 10.2 113 148-319 153-266 (278)
151 PRK14173 bifunctional 5,10-met 97.8 0.0005 1.1E-08 64.9 13.1 133 148-337 150-285 (287)
152 COG0345 ProC Pyrroline-5-carbo 97.8 0.0001 2.2E-09 69.0 8.3 98 154-276 2-108 (266)
153 PRK14187 bifunctional 5,10-met 97.8 0.00013 2.9E-09 69.0 9.0 80 148-264 155-235 (294)
154 PRK14184 bifunctional 5,10-met 97.7 0.00013 2.8E-09 68.9 8.7 78 148-262 152-234 (286)
155 PRK14180 bifunctional 5,10-met 97.7 0.00014 3.1E-09 68.4 8.8 79 148-263 153-232 (282)
156 PRK14171 bifunctional 5,10-met 97.7 0.00014 3E-09 68.6 8.6 123 148-328 154-277 (288)
157 PLN02897 tetrahydrofolate dehy 97.7 0.00013 2.8E-09 70.2 8.6 127 148-327 209-337 (345)
158 PRK14182 bifunctional 5,10-met 97.7 0.00016 3.4E-09 68.1 8.9 122 148-327 152-274 (282)
159 PRK14174 bifunctional 5,10-met 97.7 0.00014 3.1E-09 68.9 8.7 80 148-264 154-238 (295)
160 COG0059 IlvC Ketol-acid reduct 97.7 4.4E-05 9.4E-10 71.7 5.0 90 150-257 15-105 (338)
161 PRK14982 acyl-ACP reductase; P 97.7 0.0001 2.3E-09 71.2 7.8 98 148-268 150-253 (340)
162 TIGR01915 npdG NADPH-dependent 97.7 3.7E-05 7.9E-10 69.9 4.4 102 155-264 2-104 (219)
163 KOG2380 Prephenate dehydrogena 97.7 4E-05 8.7E-10 72.9 4.7 105 153-277 52-159 (480)
164 PRK14181 bifunctional 5,10-met 97.7 0.00018 3.9E-09 67.8 9.1 80 148-264 148-232 (287)
165 PLN02616 tetrahydrofolate dehy 97.7 0.00014 3.1E-09 70.2 8.5 122 148-322 226-349 (364)
166 PRK07634 pyrroline-5-carboxyla 97.7 7.6E-05 1.7E-09 68.6 6.3 105 153-278 4-114 (245)
167 COG0373 HemA Glutamyl-tRNA red 97.7 7.8E-05 1.7E-09 73.6 6.5 98 150-267 175-280 (414)
168 COG0190 FolD 5,10-methylene-te 97.7 0.0004 8.7E-09 64.9 10.8 116 148-321 151-267 (283)
169 PRK12557 H(2)-dependent methyl 97.7 8.4E-05 1.8E-09 72.2 6.3 98 165-276 32-132 (342)
170 PRK14193 bifunctional 5,10-met 97.6 0.00028 6E-09 66.6 9.1 114 148-320 153-269 (284)
171 PRK06141 ornithine cyclodeamin 97.6 0.00016 3.5E-09 69.4 7.5 91 152-261 124-219 (314)
172 PRK14185 bifunctional 5,10-met 97.6 0.00031 6.6E-09 66.5 9.1 80 148-264 152-236 (293)
173 PRK13940 glutamyl-tRNA reducta 97.6 0.00014 3.1E-09 72.3 6.5 93 149-263 177-275 (414)
174 PRK14168 bifunctional 5,10-met 97.5 0.00039 8.4E-09 66.0 8.9 132 148-333 156-294 (297)
175 PRK07340 ornithine cyclodeamin 97.5 0.00017 3.7E-09 69.0 6.4 91 152-262 124-218 (304)
176 PRK00676 hemA glutamyl-tRNA re 97.5 0.00035 7.7E-09 67.4 8.3 94 149-264 170-264 (338)
177 TIGR02371 ala_DH_arch alanine 97.5 0.00023 5E-09 68.7 7.0 90 153-262 128-223 (325)
178 TIGR02354 thiF_fam2 thiamine b 97.5 0.00021 4.5E-09 64.2 6.3 111 149-260 17-144 (200)
179 PRK12921 2-dehydropantoate 2-r 97.5 0.00027 5.8E-09 67.0 7.4 120 155-281 2-121 (305)
180 TIGR00507 aroE shikimate 5-deh 97.5 0.00031 6.6E-09 66.0 7.6 112 150-280 114-231 (270)
181 PTZ00431 pyrroline carboxylate 97.5 0.00021 4.6E-09 66.7 6.4 97 153-276 3-103 (260)
182 PRK14167 bifunctional 5,10-met 97.5 0.00064 1.4E-08 64.5 9.2 80 148-264 152-236 (297)
183 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.0024 5.3E-08 58.5 12.1 125 149-283 27-156 (227)
184 PRK06522 2-dehydropantoate 2-r 97.4 0.00083 1.8E-08 63.5 8.9 129 155-292 2-132 (304)
185 PRK09310 aroDE bifunctional 3- 97.4 0.00059 1.3E-08 69.3 8.2 76 148-237 327-402 (477)
186 COG0026 PurK Phosphoribosylami 97.3 0.00041 8.9E-09 67.0 6.2 67 153-231 1-68 (375)
187 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.014 3.1E-07 54.3 15.9 128 148-282 33-173 (254)
188 KOG0023 Alcohol dehydrogenase, 97.3 0.00046 9.9E-09 65.5 5.9 37 152-188 181-217 (360)
189 PLN02477 glutamate dehydrogena 97.2 0.014 3.1E-07 57.9 16.4 126 148-283 201-331 (410)
190 PRK12549 shikimate 5-dehydroge 97.2 0.00086 1.9E-08 63.5 7.5 103 150-264 124-230 (284)
191 TIGR02992 ectoine_eutC ectoine 97.2 0.00073 1.6E-08 65.2 6.9 95 152-261 128-224 (326)
192 PRK08618 ornithine cyclodeamin 97.2 0.00075 1.6E-08 65.1 6.6 91 152-262 126-222 (325)
193 PRK14031 glutamate dehydrogena 97.2 0.0042 9.1E-08 62.2 11.6 123 148-281 223-361 (444)
194 PRK09414 glutamate dehydrogena 97.2 0.0038 8.3E-08 62.6 11.3 128 148-282 227-363 (445)
195 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0049 1.1E-07 56.1 11.0 122 149-281 19-145 (217)
196 PRK11730 fadB multifunctional 97.1 0.0012 2.5E-08 70.4 7.9 132 154-289 314-453 (715)
197 PF02423 OCD_Mu_crystall: Orni 97.1 0.00066 1.4E-08 65.2 5.2 94 154-265 129-228 (313)
198 PRK06046 alanine dehydrogenase 97.1 0.001 2.2E-08 64.2 6.4 89 153-261 129-223 (326)
199 PF13241 NAD_binding_7: Putati 97.1 0.00047 1E-08 55.1 3.1 88 150-261 4-91 (103)
200 PRK08291 ectoine utilization p 97.1 0.0012 2.6E-08 63.9 6.4 94 152-260 131-226 (330)
201 PF02153 PDH: Prephenate dehyd 97.0 0.0014 3E-08 61.2 6.6 127 168-312 1-133 (258)
202 COG0362 Gnd 6-phosphogluconate 97.0 0.015 3.2E-07 56.9 13.6 162 154-340 4-170 (473)
203 TIGR02356 adenyl_thiF thiazole 97.0 0.00031 6.6E-09 63.2 2.0 45 142-186 10-55 (202)
204 TIGR01763 MalateDH_bact malate 97.0 0.0019 4.1E-08 61.8 7.3 126 154-286 2-147 (305)
205 COG2423 Predicted ornithine cy 97.0 0.0022 4.7E-08 61.9 7.5 95 153-262 130-226 (330)
206 COG0240 GpsA Glycerol-3-phosph 97.0 0.0021 4.6E-08 61.6 7.2 112 154-271 2-115 (329)
207 TIGR01809 Shik-DH-AROM shikima 97.0 0.0015 3.2E-08 61.8 6.2 79 150-236 122-201 (282)
208 COG1064 AdhP Zn-dependent alco 96.9 0.0015 3.2E-08 63.1 5.8 37 152-188 166-202 (339)
209 PRK12475 thiamine/molybdopteri 96.9 0.00094 2E-08 64.8 4.3 44 143-186 14-58 (338)
210 PF00208 ELFV_dehydrog: Glutam 96.9 0.0026 5.6E-08 59.0 7.0 123 149-282 28-166 (244)
211 PRK06718 precorrin-2 dehydroge 96.9 0.001 2.3E-08 59.8 4.1 39 148-186 5-43 (202)
212 TIGR01921 DAP-DH diaminopimela 96.9 0.0025 5.4E-08 61.3 6.9 86 154-261 4-91 (324)
213 TIGR03376 glycerol3P_DH glycer 96.9 0.0022 4.7E-08 62.4 6.5 107 155-265 1-120 (342)
214 COG1004 Ugd Predicted UDP-gluc 96.9 0.0046 1E-07 60.5 8.7 151 154-307 1-169 (414)
215 TIGR02964 xanthine_xdhC xanthi 96.9 0.0044 9.6E-08 57.5 8.3 89 154-281 101-189 (246)
216 TIGR02441 fa_ox_alpha_mit fatt 96.9 0.0022 4.8E-08 68.4 7.2 132 154-289 336-475 (737)
217 PRK06199 ornithine cyclodeamin 96.9 0.0029 6.3E-08 62.4 7.3 100 153-262 155-260 (379)
218 PRK06823 ornithine cyclodeamin 96.8 0.003 6.5E-08 60.7 7.1 93 153-261 128-222 (315)
219 PRK11154 fadJ multifunctional 96.8 0.0028 6E-08 67.5 7.5 131 154-288 310-449 (708)
220 TIGR02440 FadJ fatty oxidation 96.8 0.003 6.6E-08 67.1 7.8 131 154-289 305-445 (699)
221 COG5322 Predicted dehydrogenas 96.8 0.0064 1.4E-07 56.5 8.8 105 147-268 161-268 (351)
222 PRK06249 2-dehydropantoate 2-r 96.8 0.013 2.7E-07 56.2 11.4 121 154-283 6-127 (313)
223 COG1712 Predicted dinucleotide 96.8 0.0029 6.2E-08 57.3 6.2 93 155-269 2-99 (255)
224 TIGR02437 FadB fatty oxidation 96.8 0.004 8.8E-08 66.3 8.5 130 154-288 314-452 (714)
225 PF01408 GFO_IDH_MocA: Oxidore 96.8 0.0013 2.8E-08 53.4 3.6 64 155-235 2-72 (120)
226 COG1250 FadB 3-hydroxyacyl-CoA 96.8 0.0049 1.1E-07 58.9 7.8 134 153-291 3-145 (307)
227 TIGR01470 cysG_Nterm siroheme 96.8 0.0021 4.5E-08 58.0 5.1 96 148-260 4-99 (205)
228 PTZ00345 glycerol-3-phosphate 96.7 0.0023 5E-08 62.7 5.6 112 154-267 12-135 (365)
229 smart00859 Semialdhyde_dh Semi 96.7 0.0032 7E-08 51.5 5.3 96 155-261 1-99 (122)
230 COG1748 LYS9 Saccharopine dehy 96.7 0.0023 4.9E-08 63.0 5.1 100 154-265 2-103 (389)
231 cd00757 ThiF_MoeB_HesA_family 96.7 0.001 2.2E-08 60.9 2.5 116 142-261 10-143 (228)
232 PTZ00117 malate dehydrogenase; 96.7 0.0042 9.2E-08 59.8 6.8 127 152-286 4-151 (319)
233 PRK12548 shikimate 5-dehydroge 96.7 0.01 2.2E-07 56.4 9.2 37 150-186 123-160 (289)
234 PRK14030 glutamate dehydrogena 96.6 0.056 1.2E-06 54.2 14.5 166 148-333 223-410 (445)
235 PF13478 XdhC_C: XdhC Rossmann 96.6 0.0025 5.4E-08 53.8 4.2 86 156-285 1-86 (136)
236 PRK06407 ornithine cyclodeamin 96.6 0.0051 1.1E-07 58.8 6.9 90 153-261 117-212 (301)
237 PRK13301 putative L-aspartate 96.6 0.0058 1.3E-07 57.0 6.9 103 154-278 3-113 (267)
238 PRK00856 pyrB aspartate carbam 96.6 0.056 1.2E-06 51.8 13.8 65 150-232 153-220 (305)
239 PRK05690 molybdopterin biosynt 96.6 0.0027 5.9E-08 58.8 4.5 45 142-186 21-66 (245)
240 PRK12439 NAD(P)H-dependent gly 96.6 0.0024 5.1E-08 62.1 4.2 104 154-264 8-114 (341)
241 PRK14620 NAD(P)H-dependent gly 96.5 0.0051 1.1E-07 59.2 6.4 106 155-264 2-109 (326)
242 PRK07688 thiamine/molybdopteri 96.5 0.0024 5.2E-08 62.0 3.9 44 143-186 14-58 (339)
243 PRK06019 phosphoribosylaminoim 96.5 0.0053 1.1E-07 60.3 6.2 36 153-188 2-37 (372)
244 cd00650 LDH_MDH_like NAD-depen 96.5 0.0025 5.3E-08 59.6 3.6 126 156-288 1-149 (263)
245 COG0334 GdhA Glutamate dehydro 96.5 0.008 1.7E-07 59.1 7.1 111 148-268 202-319 (411)
246 cd05312 NAD_bind_1_malic_enz N 96.4 0.12 2.6E-06 48.7 14.7 187 116-335 4-222 (279)
247 PRK07589 ornithine cyclodeamin 96.4 0.0079 1.7E-07 58.6 6.7 95 153-261 129-225 (346)
248 PRK06719 precorrin-2 dehydroge 96.4 0.0066 1.4E-07 52.4 5.5 40 147-186 7-46 (157)
249 cd00762 NAD_bind_malic_enz NAD 96.3 0.083 1.8E-06 49.1 12.6 192 116-334 4-222 (254)
250 PRK12862 malic enzyme; Reviewe 96.3 0.1 2.2E-06 56.0 14.7 168 99-312 161-333 (763)
251 PRK07232 bifunctional malic en 96.3 0.081 1.8E-06 56.4 13.9 171 98-312 152-325 (752)
252 PRK12861 malic enzyme; Reviewe 96.3 0.091 2E-06 56.1 14.2 191 99-334 157-356 (764)
253 cd05291 HicDH_like L-2-hydroxy 96.2 0.013 2.8E-07 56.0 7.3 105 154-267 1-121 (306)
254 PRK01710 murD UDP-N-acetylmura 96.2 0.0084 1.8E-07 60.5 6.3 118 150-277 11-141 (458)
255 TIGR03026 NDP-sugDHase nucleot 96.2 0.026 5.7E-07 56.1 9.7 90 150-260 310-409 (411)
256 COG0569 TrkA K+ transport syst 96.2 0.0045 9.8E-08 56.6 3.7 75 154-236 1-77 (225)
257 KOG2653 6-phosphogluconate deh 96.2 0.083 1.8E-06 51.1 12.0 163 154-340 7-174 (487)
258 PRK00048 dihydrodipicolinate r 96.1 0.017 3.8E-07 53.8 7.1 63 154-234 2-69 (257)
259 PRK08306 dipicolinate synthase 96.0 0.055 1.2E-06 51.5 10.4 104 152-281 1-116 (296)
260 PTZ00079 NADP-specific glutama 96.0 0.12 2.6E-06 52.0 13.0 128 148-282 232-372 (454)
261 PRK00779 ornithine carbamoyltr 96.0 0.13 2.8E-06 49.3 12.7 99 150-260 149-264 (304)
262 PLN02520 bifunctional 3-dehydr 96.0 0.025 5.5E-07 58.2 8.4 38 150-187 376-413 (529)
263 PRK00683 murD UDP-N-acetylmura 96.0 0.02 4.3E-07 57.1 7.4 35 153-187 3-37 (418)
264 PRK05597 molybdopterin biosynt 96.0 0.0079 1.7E-07 58.8 4.4 46 141-186 16-62 (355)
265 PRK13303 L-aspartate dehydroge 95.9 0.016 3.6E-07 54.2 6.3 107 154-279 2-113 (265)
266 PRK06444 prephenate dehydrogen 95.9 0.013 2.8E-07 52.5 5.2 26 155-180 2-28 (197)
267 COG0281 SfcA Malic enzyme [Ene 95.9 0.12 2.5E-06 51.2 12.1 195 97-334 165-369 (432)
268 COG0169 AroE Shikimate 5-dehyd 95.9 0.028 6.1E-07 53.2 7.6 112 149-278 122-242 (283)
269 PRK14027 quinate/shikimate deh 95.9 0.031 6.6E-07 53.0 7.9 39 150-188 124-163 (283)
270 PF13380 CoA_binding_2: CoA bi 95.9 0.015 3.3E-07 47.5 5.1 100 154-281 1-104 (116)
271 PRK02255 putrescine carbamoylt 95.9 0.13 2.8E-06 50.0 12.2 103 149-260 150-271 (338)
272 PF01118 Semialdhyde_dh: Semia 95.8 0.018 4E-07 47.2 5.4 94 155-262 1-98 (121)
273 PF00185 OTCace: Aspartate/orn 95.8 0.045 9.8E-07 47.2 8.1 103 152-261 1-120 (158)
274 PRK05600 thiamine biosynthesis 95.8 0.01 2.2E-07 58.4 4.3 52 134-185 22-74 (370)
275 PF03720 UDPG_MGDP_dh_C: UDP-g 95.8 0.011 2.5E-07 47.3 4.0 81 164-260 18-100 (106)
276 PRK06223 malate dehydrogenase; 95.7 0.037 8E-07 52.7 7.9 126 154-286 3-148 (307)
277 PF13460 NAD_binding_10: NADH( 95.7 0.015 3.3E-07 50.4 4.8 71 156-238 1-73 (183)
278 COG1648 CysG Siroheme synthase 95.7 0.012 2.6E-07 53.3 4.2 96 148-260 7-102 (210)
279 PRK12749 quinate/shikimate deh 95.7 0.049 1.1E-06 51.7 8.4 38 149-186 120-158 (288)
280 PLN02948 phosphoribosylaminoim 95.7 0.025 5.5E-07 58.8 6.9 39 149-187 18-56 (577)
281 PLN02353 probable UDP-glucose 95.6 0.068 1.5E-06 54.3 9.7 119 149-271 320-455 (473)
282 PRK01713 ornithine carbamoyltr 95.6 0.19 4E-06 48.8 12.4 138 92-260 116-274 (334)
283 TIGR01850 argC N-acetyl-gamma- 95.6 0.029 6.3E-07 54.6 6.8 95 154-261 1-99 (346)
284 PRK03369 murD UDP-N-acetylmura 95.6 0.019 4.1E-07 58.5 5.7 35 151-185 10-44 (488)
285 cd05293 LDH_1 A subgroup of L- 95.6 0.044 9.6E-07 52.6 7.8 123 153-284 3-145 (312)
286 PRK08269 3-hydroxybutyryl-CoA 95.6 0.048 1E-06 52.4 8.0 111 164-276 1-128 (314)
287 PF01113 DapB_N: Dihydrodipico 95.6 0.022 4.8E-07 47.0 5.0 67 155-233 2-75 (124)
288 TIGR01161 purK phosphoribosyla 95.5 0.023 4.9E-07 55.3 5.7 33 155-187 1-33 (352)
289 cd01486 Apg7 Apg7 is an E1-lik 95.5 0.027 5.9E-07 53.6 5.9 102 155-261 1-140 (307)
290 TIGR02355 moeB molybdopterin s 95.5 0.025 5.4E-07 52.3 5.5 38 149-186 20-58 (240)
291 TIGR00670 asp_carb_tr aspartat 95.5 0.078 1.7E-06 50.7 9.0 98 150-260 147-262 (301)
292 TIGR00658 orni_carb_tr ornithi 95.5 0.35 7.5E-06 46.3 13.4 101 151-260 146-263 (304)
293 COG3288 PntA NAD/NADP transhyd 95.5 0.013 2.9E-07 55.4 3.6 113 148-264 159-286 (356)
294 PRK11891 aspartate carbamoyltr 95.5 0.17 3.7E-06 50.6 11.6 137 93-260 198-354 (429)
295 PRK02102 ornithine carbamoyltr 95.4 0.17 3.7E-06 49.0 11.2 74 150-232 152-231 (331)
296 PTZ00082 L-lactate dehydrogena 95.4 0.025 5.4E-07 54.6 5.3 131 151-287 4-158 (321)
297 COG0771 MurD UDP-N-acetylmuram 95.4 0.064 1.4E-06 53.9 8.3 130 151-291 5-156 (448)
298 PRK00066 ldh L-lactate dehydro 95.4 0.026 5.6E-07 54.3 5.3 37 152-188 5-43 (315)
299 PLN02968 Probable N-acetyl-gam 95.3 0.029 6.2E-07 55.4 5.5 106 152-273 37-146 (381)
300 PF02254 TrkA_N: TrkA-N domain 95.3 0.018 3.9E-07 46.3 3.5 88 156-258 1-93 (116)
301 PRK08762 molybdopterin biosynt 95.3 0.02 4.2E-07 56.5 4.3 43 143-185 125-168 (376)
302 PRK05086 malate dehydrogenase; 95.3 0.063 1.4E-06 51.6 7.7 102 154-264 1-121 (312)
303 PF03435 Saccharop_dh: Sacchar 95.3 0.022 4.7E-07 56.1 4.7 75 156-236 1-78 (386)
304 PLN02342 ornithine carbamoyltr 95.3 0.41 8.8E-06 46.7 13.3 102 150-260 191-306 (348)
305 PRK08644 thiamine biosynthesis 95.2 0.035 7.6E-07 50.3 5.4 38 148-185 23-61 (212)
306 PF04016 DUF364: Domain of unk 95.2 0.054 1.2E-06 46.3 6.1 84 151-261 9-95 (147)
307 cd05297 GH4_alpha_glucosidase_ 95.1 0.024 5.1E-07 56.8 4.2 77 155-235 2-84 (423)
308 PRK13529 malate dehydrogenase; 95.1 0.85 1.8E-05 47.0 15.3 229 73-335 237-499 (563)
309 PRK13814 pyrB aspartate carbam 95.0 0.52 1.1E-05 45.3 13.1 66 150-231 154-223 (310)
310 cd05292 LDH_2 A subgroup of L- 95.0 0.033 7.1E-07 53.4 5.0 99 155-261 2-116 (308)
311 PF03949 Malic_M: Malic enzyme 95.0 0.15 3.3E-06 47.4 9.1 136 116-278 4-158 (255)
312 PF02558 ApbA: Ketopantoate re 95.0 0.012 2.6E-07 49.7 1.6 122 156-283 1-122 (151)
313 PLN02819 lysine-ketoglutarate 95.0 0.074 1.6E-06 58.7 8.0 110 150-261 200-338 (1042)
314 PRK09496 trkA potassium transp 94.9 0.021 4.6E-07 57.1 3.5 74 154-236 1-76 (453)
315 PRK03659 glutathione-regulated 94.9 0.031 6.8E-07 58.4 4.7 97 153-263 400-500 (601)
316 cd01339 LDH-like_MDH L-lactate 94.9 0.031 6.8E-07 53.2 4.4 122 156-286 1-144 (300)
317 PRK06270 homoserine dehydrogen 94.8 0.13 2.8E-06 50.1 8.5 125 155-280 4-145 (341)
318 PLN02527 aspartate carbamoyltr 94.8 0.16 3.4E-06 48.7 8.9 98 150-260 148-265 (306)
319 TIGR02853 spore_dpaA dipicolin 94.8 0.33 7.1E-06 46.1 11.0 111 153-289 1-121 (287)
320 PRK11579 putative oxidoreducta 94.8 0.055 1.2E-06 52.5 5.8 66 154-236 5-75 (346)
321 PRK10669 putative cation:proto 94.8 0.025 5.5E-07 58.5 3.6 92 154-259 418-513 (558)
322 PRK14804 ornithine carbamoyltr 94.8 0.46 1E-05 45.6 12.0 72 150-232 150-225 (311)
323 PRK09880 L-idonate 5-dehydroge 94.8 0.093 2E-06 50.5 7.4 93 152-262 169-267 (343)
324 PRK10637 cysG siroheme synthas 94.7 0.05 1.1E-06 55.0 5.6 97 148-261 7-103 (457)
325 TIGR03316 ygeW probable carbam 94.7 0.32 6.9E-06 47.6 10.8 74 150-232 167-252 (357)
326 cd01492 Aos1_SUMO Ubiquitin ac 94.7 0.022 4.9E-07 50.9 2.6 44 143-186 11-55 (197)
327 PRK03515 ornithine carbamoyltr 94.6 0.32 7E-06 47.2 10.7 74 150-232 153-232 (336)
328 PRK04207 glyceraldehyde-3-phos 94.6 0.07 1.5E-06 51.9 6.0 30 155-184 3-33 (341)
329 PRK11064 wecC UDP-N-acetyl-D-m 94.6 0.13 2.8E-06 51.4 8.0 72 148-236 315-397 (415)
330 PRK05562 precorrin-2 dehydroge 94.6 0.063 1.4E-06 49.0 5.3 40 148-187 20-59 (223)
331 PRK08223 hypothetical protein; 94.5 0.078 1.7E-06 50.2 6.0 38 148-185 22-60 (287)
332 PRK12550 shikimate 5-dehydroge 94.5 0.13 2.8E-06 48.5 7.4 36 153-188 122-158 (272)
333 PRK00436 argC N-acetyl-gamma-g 94.5 0.089 1.9E-06 51.2 6.5 98 154-268 3-106 (343)
334 cd00300 LDH_like L-lactate deh 94.5 0.12 2.5E-06 49.4 7.1 94 156-261 1-115 (300)
335 PRK15182 Vi polysaccharide bio 94.4 0.19 4.1E-06 50.4 8.7 96 148-265 309-416 (425)
336 PRK04284 ornithine carbamoyltr 94.3 0.41 8.9E-06 46.4 10.7 102 150-260 152-273 (332)
337 PRK04523 N-acetylornithine car 94.2 1.1 2.5E-05 43.4 13.4 74 151-233 166-252 (335)
338 PRK03562 glutathione-regulated 94.1 0.058 1.3E-06 56.7 4.7 93 153-259 400-496 (621)
339 PRK08328 hypothetical protein; 94.1 0.055 1.2E-06 49.7 3.9 44 143-186 17-61 (231)
340 PRK14106 murD UDP-N-acetylmura 94.1 0.063 1.4E-06 53.8 4.7 37 150-186 2-38 (450)
341 PRK02472 murD UDP-N-acetylmura 94.1 0.074 1.6E-06 53.2 5.1 37 150-186 2-38 (447)
342 cd01487 E1_ThiF_like E1_ThiF_l 94.0 0.073 1.6E-06 46.7 4.4 32 155-186 1-33 (174)
343 PRK12562 ornithine carbamoyltr 94.0 0.93 2E-05 44.0 12.3 102 150-260 153-274 (334)
344 PF00070 Pyr_redox: Pyridine n 94.0 0.099 2.1E-06 39.3 4.5 33 155-187 1-33 (80)
345 PRK01368 murD UDP-N-acetylmura 94.0 0.12 2.6E-06 52.3 6.4 112 151-277 4-128 (454)
346 COG0673 MviM Predicted dehydro 94.0 0.073 1.6E-06 51.0 4.7 66 154-236 4-78 (342)
347 cd08230 glucose_DH Glucose deh 94.0 0.066 1.4E-06 51.8 4.4 34 152-185 172-205 (355)
348 cd05294 LDH-like_MDH_nadp A la 93.9 0.24 5.2E-06 47.5 8.1 124 154-284 1-146 (309)
349 cd05188 MDR Medium chain reduc 93.9 0.27 5.9E-06 44.5 8.1 98 151-264 133-235 (271)
350 PRK09496 trkA potassium transp 93.9 0.1 2.2E-06 52.2 5.7 38 150-187 228-265 (453)
351 TIGR01202 bchC 2-desacetyl-2-h 93.8 0.1 2.2E-06 49.6 5.3 34 152-185 144-178 (308)
352 PRK04148 hypothetical protein; 93.8 0.089 1.9E-06 44.2 4.2 35 152-187 16-50 (134)
353 PLN00106 malate dehydrogenase 93.8 0.22 4.7E-06 48.1 7.5 106 152-265 17-139 (323)
354 PLN03129 NADP-dependent malic 93.8 1.1 2.3E-05 46.5 12.8 200 97-334 287-517 (581)
355 PLN02819 lysine-ketoglutarate 93.7 0.063 1.4E-06 59.2 4.1 77 152-236 568-659 (1042)
356 PF00899 ThiF: ThiF family; I 93.7 0.065 1.4E-06 44.6 3.3 35 153-187 2-37 (135)
357 PRK00141 murD UDP-N-acetylmura 93.7 0.083 1.8E-06 53.6 4.7 38 149-186 11-48 (473)
358 PRK02006 murD UDP-N-acetylmura 93.6 0.088 1.9E-06 53.7 4.8 37 150-186 4-40 (498)
359 PRK14851 hypothetical protein; 93.6 0.17 3.7E-06 53.6 7.1 182 148-338 38-256 (679)
360 cd08237 ribitol-5-phosphate_DH 93.5 0.18 3.9E-06 48.6 6.5 91 152-262 163-257 (341)
361 COG1004 Ugd Predicted UDP-gluc 93.5 0.18 3.9E-06 49.6 6.3 89 151-259 308-406 (414)
362 PRK01390 murD UDP-N-acetylmura 93.4 0.099 2.1E-06 52.7 4.7 36 150-185 6-41 (460)
363 PTZ00325 malate dehydrogenase; 93.4 0.28 6.1E-06 47.3 7.5 108 150-265 5-129 (321)
364 PRK04690 murD UDP-N-acetylmura 93.2 0.093 2E-06 53.2 4.2 116 151-277 6-139 (468)
365 cd01337 MDH_glyoxysomal_mitoch 93.2 0.45 9.7E-06 45.7 8.6 98 154-263 1-119 (310)
366 TIGR03366 HpnZ_proposed putati 93.2 0.19 4.2E-06 46.9 6.0 35 152-186 120-155 (280)
367 PRK10206 putative oxidoreducta 93.0 0.16 3.5E-06 49.3 5.4 64 155-236 3-75 (344)
368 cd00704 MDH Malate dehydrogena 93.0 0.88 1.9E-05 44.0 10.3 108 155-278 2-141 (323)
369 PLN02586 probable cinnamyl alc 93.0 0.25 5.5E-06 48.1 6.7 35 152-186 183-217 (360)
370 PLN02272 glyceraldehyde-3-phos 92.9 0.12 2.5E-06 51.5 4.1 30 154-183 86-116 (421)
371 PF05368 NmrA: NmrA-like famil 92.9 0.1 2.3E-06 47.2 3.6 73 156-236 1-75 (233)
372 PTZ00317 NADP-dependent malic 92.8 3.8 8.2E-05 42.4 15.0 227 72-334 238-497 (559)
373 cd01485 E1-1_like Ubiquitin ac 92.8 0.076 1.6E-06 47.6 2.5 44 143-186 9-53 (198)
374 PRK01438 murD UDP-N-acetylmura 92.8 0.15 3.2E-06 51.7 4.8 39 148-186 11-49 (480)
375 COG2227 UbiG 2-polyprenyl-3-me 92.7 0.27 5.9E-06 45.2 5.9 93 151-258 58-158 (243)
376 PF00044 Gp_dh_N: Glyceraldehy 92.7 0.14 3.1E-06 43.9 3.9 31 155-185 2-33 (151)
377 PRK07877 hypothetical protein; 92.7 0.13 2.7E-06 54.9 4.3 101 148-250 102-220 (722)
378 KOG0022 Alcohol dehydrogenase, 92.6 0.12 2.6E-06 49.3 3.6 37 152-188 192-229 (375)
379 TIGR02717 AcCoA-syn-alpha acet 92.6 0.6 1.3E-05 47.1 9.0 107 151-281 5-123 (447)
380 PLN02602 lactate dehydrogenase 92.6 0.29 6.2E-06 47.8 6.4 100 154-261 38-154 (350)
381 TIGR03649 ergot_EASG ergot alk 92.6 0.32 6.9E-06 45.3 6.5 69 155-236 1-78 (285)
382 cd01483 E1_enzyme_family Super 92.5 0.16 3.6E-06 42.5 4.0 32 155-186 1-33 (143)
383 PRK04308 murD UDP-N-acetylmura 92.4 0.19 4E-06 50.5 5.0 37 151-187 3-39 (445)
384 TIGR02822 adh_fam_2 zinc-bindi 92.4 0.19 4.1E-06 48.2 4.9 37 152-188 165-201 (329)
385 COG0493 GltD NADPH-dependent g 92.3 1.4 3.1E-05 44.6 11.2 41 147-187 117-157 (457)
386 cd01336 MDH_cytoplasmic_cytoso 92.2 0.42 9E-06 46.2 7.0 100 155-268 4-133 (325)
387 PRK08192 aspartate carbamoyltr 92.2 0.65 1.4E-05 45.2 8.2 71 149-232 155-233 (338)
388 PLN03209 translocon at the inn 92.1 0.21 4.6E-06 51.7 5.0 37 151-187 78-115 (576)
389 PRK00421 murC UDP-N-acetylmura 92.1 0.18 4E-06 50.8 4.6 114 151-278 5-132 (461)
390 PLN00141 Tic62-NAD(P)-related 92.0 0.28 6.1E-06 45.0 5.3 39 149-187 13-52 (251)
391 KOG2304 3-hydroxyacyl-CoA dehy 91.9 0.13 2.7E-06 47.0 2.8 150 152-312 10-174 (298)
392 CHL00194 ycf39 Ycf39; Provisio 91.9 0.26 5.7E-06 46.9 5.2 70 155-234 2-73 (317)
393 cd01338 MDH_choloroplast_like 91.9 0.39 8.4E-06 46.4 6.4 112 154-273 3-138 (322)
394 PF02629 CoA_binding: CoA bind 91.9 0.24 5.1E-06 38.9 4.0 66 153-235 3-72 (96)
395 TIGR01761 thiaz-red thiazoliny 91.9 0.29 6.3E-06 47.7 5.4 107 154-281 4-117 (343)
396 COG0057 GapA Glyceraldehyde-3- 91.8 0.18 4E-06 48.4 3.9 31 154-184 2-34 (335)
397 TIGR01142 purT phosphoribosylg 91.8 0.33 7.1E-06 47.5 5.8 33 155-187 1-33 (380)
398 TIGR01759 MalateDH-SF1 malate 91.8 0.49 1.1E-05 45.7 6.9 106 155-269 5-135 (323)
399 COG2344 AT-rich DNA-binding pr 91.7 0.12 2.6E-06 45.8 2.3 67 155-236 86-157 (211)
400 PRK03803 murD UDP-N-acetylmura 91.7 0.22 4.8E-06 50.0 4.6 35 152-186 5-39 (448)
401 PRK07411 hypothetical protein; 91.7 0.12 2.6E-06 51.2 2.7 44 143-186 28-72 (390)
402 COG2910 Putative NADH-flavin r 91.6 0.46 1E-05 42.1 5.9 72 154-236 1-73 (211)
403 PLN02662 cinnamyl-alcohol dehy 91.4 0.57 1.2E-05 44.3 6.9 35 152-186 3-38 (322)
404 PRK03806 murD UDP-N-acetylmura 91.4 0.28 6E-06 49.1 5.0 37 150-186 3-39 (438)
405 PRK06197 short chain dehydroge 91.4 0.22 4.8E-06 47.0 4.0 48 140-187 3-51 (306)
406 PRK12771 putative glutamate sy 91.4 0.4 8.6E-06 49.8 6.2 44 142-185 126-169 (564)
407 PRK07523 gluconate 5-dehydroge 91.3 0.29 6.2E-06 44.7 4.6 38 150-187 7-45 (255)
408 PLN02214 cinnamoyl-CoA reducta 91.1 0.62 1.3E-05 45.0 6.9 82 150-234 7-90 (342)
409 PRK08300 acetaldehyde dehydrog 91.1 0.49 1.1E-05 45.2 6.0 98 153-271 4-118 (302)
410 PRK13376 pyrB bifunctional asp 91.1 0.99 2.1E-05 46.4 8.5 102 150-264 171-299 (525)
411 PRK12828 short chain dehydroge 91.0 0.31 6.7E-06 43.6 4.4 38 150-187 4-42 (239)
412 KOG0399 Glutamate synthase [Am 91.0 0.91 2E-05 50.2 8.4 89 143-236 1774-1881(2142)
413 PRK08217 fabG 3-ketoacyl-(acyl 91.0 0.33 7.2E-06 43.8 4.6 38 150-187 2-40 (253)
414 PF05222 AlaDh_PNT_N: Alanine 91.0 0.92 2E-05 38.1 7.0 99 167-289 18-118 (136)
415 PLN02178 cinnamyl-alcohol dehy 91.0 0.47 1E-05 46.5 6.0 35 152-186 178-212 (375)
416 COG0677 WecC UDP-N-acetyl-D-ma 90.9 1.8 3.8E-05 42.8 9.6 94 147-260 316-419 (436)
417 cd08281 liver_ADH_like1 Zinc-d 90.9 0.44 9.4E-06 46.4 5.7 37 152-188 191-228 (371)
418 TIGR03215 ac_ald_DH_ac acetald 90.9 0.56 1.2E-05 44.5 6.2 66 155-236 3-75 (285)
419 PRK07878 molybdopterin biosynt 90.8 0.16 3.5E-06 50.3 2.6 44 143-186 32-76 (392)
420 PRK06153 hypothetical protein; 90.8 0.22 4.8E-06 49.0 3.4 37 149-185 172-209 (393)
421 PLN02695 GDP-D-mannose-3',5'-e 90.7 0.54 1.2E-05 46.0 6.2 35 152-186 20-55 (370)
422 COG0540 PyrB Aspartate carbamo 90.7 1.7 3.7E-05 41.5 9.1 69 151-231 156-230 (316)
423 cd05290 LDH_3 A subgroup of L- 90.7 0.31 6.7E-06 46.7 4.3 33 155-187 1-35 (307)
424 KOG4230 C1-tetrahydrofolate sy 90.7 0.83 1.8E-05 46.9 7.3 136 148-336 157-294 (935)
425 PRK06349 homoserine dehydrogen 90.6 0.59 1.3E-05 46.9 6.4 106 154-280 4-124 (426)
426 PRK07856 short chain dehydroge 90.5 0.42 9.2E-06 43.5 5.0 37 150-186 3-40 (252)
427 PRK10537 voltage-gated potassi 90.5 1.2 2.6E-05 44.3 8.3 33 153-185 240-272 (393)
428 cd08239 THR_DH_like L-threonin 90.5 0.51 1.1E-05 45.1 5.7 36 152-187 163-199 (339)
429 TIGR00036 dapB dihydrodipicoli 90.4 0.75 1.6E-05 43.1 6.6 70 155-234 3-77 (266)
430 PRK07200 aspartate/ornithine c 90.3 1.2 2.7E-05 44.1 8.2 74 150-232 184-269 (395)
431 PRK07231 fabG 3-ketoacyl-(acyl 90.3 0.41 8.8E-06 43.3 4.6 38 150-187 2-40 (251)
432 TIGR01758 MDH_euk_cyt malate d 90.3 0.71 1.5E-05 44.6 6.4 102 155-270 1-132 (324)
433 cd08255 2-desacetyl-2-hydroxye 90.3 0.41 8.9E-06 44.1 4.6 93 152-263 97-192 (277)
434 PRK15116 sulfur acceptor prote 90.2 0.22 4.9E-06 46.7 2.8 43 143-185 20-63 (268)
435 PRK11863 N-acetyl-gamma-glutam 90.2 0.75 1.6E-05 44.2 6.4 76 154-261 3-81 (313)
436 TIGR01772 MDH_euk_gproteo mala 90.2 0.6 1.3E-05 44.9 5.8 99 155-268 1-121 (312)
437 TIGR01832 kduD 2-deoxy-D-gluco 90.1 0.43 9.4E-06 43.2 4.6 37 150-186 2-39 (248)
438 TIGR03466 HpnA hopanoid-associ 90.1 0.62 1.3E-05 43.9 5.8 71 154-234 1-73 (328)
439 PRK06057 short chain dehydroge 90.1 0.44 9.5E-06 43.5 4.7 38 150-187 4-42 (255)
440 cd00755 YgdL_like Family of ac 90.0 0.38 8.2E-06 44.2 4.1 38 149-186 7-45 (231)
441 PLN02657 3,8-divinyl protochlo 89.9 0.64 1.4E-05 46.0 5.9 40 148-187 55-95 (390)
442 PLN02427 UDP-apiose/xylose syn 89.9 0.74 1.6E-05 45.1 6.4 40 147-186 8-49 (386)
443 PRK06841 short chain dehydroge 89.9 0.47 1E-05 43.2 4.6 38 150-187 12-50 (255)
444 PRK06523 short chain dehydroge 89.8 0.48 1E-05 43.3 4.7 39 149-187 5-44 (260)
445 TIGR03451 mycoS_dep_FDH mycoth 89.8 0.7 1.5E-05 44.7 6.0 36 152-187 176-212 (358)
446 cd05283 CAD1 Cinnamyl alcohol 89.8 0.63 1.4E-05 44.5 5.7 35 152-186 169-203 (337)
447 PLN02514 cinnamyl-alcohol dehy 89.8 0.74 1.6E-05 44.6 6.2 98 151-262 179-276 (357)
448 TIGR01087 murD UDP-N-acetylmur 89.8 0.39 8.5E-06 47.9 4.3 115 155-278 1-127 (433)
449 PRK08703 short chain dehydroge 89.7 0.48 1E-05 42.7 4.6 39 149-187 2-41 (239)
450 PF03447 NAD_binding_3: Homose 89.7 0.18 3.8E-06 40.8 1.5 88 160-266 1-95 (117)
451 PRK05786 fabG 3-ketoacyl-(acyl 89.6 0.5 1.1E-05 42.4 4.6 38 150-187 2-40 (238)
452 cd08293 PTGR2 Prostaglandin re 89.6 0.72 1.6E-05 44.0 5.9 34 153-186 155-190 (345)
453 PRK05442 malate dehydrogenase; 89.6 0.84 1.8E-05 44.1 6.3 111 154-273 5-140 (326)
454 PTZ00245 ubiquitin activating 89.6 0.39 8.4E-06 44.8 3.7 44 143-186 16-60 (287)
455 TIGR01214 rmlD dTDP-4-dehydror 89.5 0.8 1.7E-05 42.5 6.0 57 155-235 1-60 (287)
456 PRK08265 short chain dehydroge 89.4 0.55 1.2E-05 43.2 4.7 38 150-187 3-41 (261)
457 PLN02989 cinnamyl-alcohol dehy 89.3 1.2 2.5E-05 42.4 7.0 35 152-186 4-39 (325)
458 smart00846 Gp_dh_N Glyceraldeh 89.3 0.55 1.2E-05 40.1 4.3 29 155-183 2-31 (149)
459 PRK06196 oxidoreductase; Provi 89.3 0.4 8.6E-06 45.6 3.8 39 149-187 22-61 (315)
460 PRK08664 aspartate-semialdehyd 89.1 1.4 3E-05 43.0 7.5 31 154-184 4-36 (349)
461 PRK05717 oxidoreductase; Valid 89.1 0.57 1.2E-05 42.8 4.6 38 149-186 6-44 (255)
462 PRK07576 short chain dehydroge 89.0 0.59 1.3E-05 43.1 4.7 39 149-187 5-44 (264)
463 cd01490 Ube1_repeat2 Ubiquitin 88.9 0.67 1.4E-05 46.5 5.2 33 155-187 1-39 (435)
464 PRK06179 short chain dehydroge 88.9 0.71 1.5E-05 42.4 5.1 36 152-187 3-39 (270)
465 PRK08339 short chain dehydroge 88.9 0.58 1.3E-05 43.2 4.5 38 150-187 5-43 (263)
466 PRK07060 short chain dehydroge 88.9 0.68 1.5E-05 41.7 4.9 39 149-187 5-44 (245)
467 PRK07774 short chain dehydroge 88.8 0.65 1.4E-05 42.0 4.7 38 150-187 3-41 (250)
468 PRK09288 purT phosphoribosylgl 88.8 0.99 2.1E-05 44.3 6.3 35 153-187 12-46 (395)
469 PRK15076 alpha-galactosidase; 88.8 0.51 1.1E-05 47.4 4.3 120 154-284 2-169 (431)
470 PRK06949 short chain dehydroge 88.8 0.65 1.4E-05 42.2 4.7 39 149-187 5-44 (258)
471 cd01491 Ube1_repeat1 Ubiquitin 88.7 0.31 6.8E-06 46.2 2.6 44 143-186 9-53 (286)
472 COG0078 ArgF Ornithine carbamo 88.7 6.2 0.00013 37.7 11.1 101 151-260 151-269 (310)
473 PRK12826 3-ketoacyl-(acyl-carr 88.7 0.6 1.3E-05 42.1 4.4 37 150-186 3-40 (251)
474 PLN02383 aspartate semialdehyd 88.6 0.93 2E-05 44.2 5.9 88 152-261 6-100 (344)
475 TIGR02825 B4_12hDH leukotriene 88.6 0.78 1.7E-05 43.5 5.3 35 152-186 138-173 (325)
476 PRK05866 short chain dehydroge 88.5 0.75 1.6E-05 43.4 5.1 41 147-187 34-75 (293)
477 PRK07831 short chain dehydroge 88.5 0.59 1.3E-05 42.8 4.3 38 150-187 14-53 (262)
478 PRK14805 ornithine carbamoyltr 88.5 7.7 0.00017 37.1 11.9 36 150-185 144-180 (302)
479 COG0039 Mdh Malate/lactate deh 88.5 1.7 3.8E-05 41.7 7.5 33 154-186 1-35 (313)
480 PRK05708 2-dehydropantoate 2-r 88.4 0.5 1.1E-05 45.1 3.8 124 154-284 3-126 (305)
481 PRK06079 enoyl-(acyl carrier p 88.4 0.67 1.5E-05 42.5 4.6 36 150-185 4-42 (252)
482 PRK06505 enoyl-(acyl carrier p 88.3 0.62 1.4E-05 43.3 4.3 36 151-186 5-43 (271)
483 PRK07533 enoyl-(acyl carrier p 88.3 0.65 1.4E-05 42.7 4.4 38 149-186 6-46 (258)
484 TIGR01381 E1_like_apg7 E1-like 88.1 0.53 1.1E-05 49.3 3.9 37 149-185 334-371 (664)
485 PRK09186 flagellin modificatio 88.0 0.64 1.4E-05 42.2 4.2 37 151-187 2-39 (256)
486 TIGR01851 argC_other N-acetyl- 88.0 1.7 3.7E-05 41.7 7.1 75 155-261 3-80 (310)
487 PRK14573 bifunctional D-alanyl 88.0 0.75 1.6E-05 49.9 5.3 111 154-278 5-129 (809)
488 PRK06172 short chain dehydroge 88.0 0.79 1.7E-05 41.6 4.8 38 150-187 4-42 (253)
489 PLN00112 malate dehydrogenase 88.0 2.4 5.1E-05 42.8 8.4 115 155-278 102-241 (444)
490 PRK05867 short chain dehydroge 88.0 0.76 1.6E-05 41.9 4.6 38 150-187 6-44 (253)
491 PRK07890 short chain dehydroge 87.9 0.69 1.5E-05 42.1 4.3 37 151-187 3-40 (258)
492 PRK08862 short chain dehydroge 87.9 0.71 1.5E-05 41.8 4.4 38 150-187 2-40 (227)
493 PRK06398 aldose dehydrogenase; 87.9 0.79 1.7E-05 42.1 4.7 38 150-187 3-41 (258)
494 PRK02705 murD UDP-N-acetylmura 87.9 0.65 1.4E-05 46.7 4.5 33 155-187 2-34 (459)
495 PRK12320 hypothetical protein; 87.9 1.1 2.4E-05 47.8 6.2 69 155-236 2-71 (699)
496 TIGR03325 BphB_TodD cis-2,3-di 87.8 0.76 1.7E-05 42.2 4.6 36 151-186 3-39 (262)
497 PF13450 NAD_binding_8: NAD(P) 87.8 0.81 1.7E-05 33.5 3.8 30 158-187 1-30 (68)
498 TIGR01777 yfcH conserved hypot 87.7 1.1 2.4E-05 41.4 5.6 64 157-234 2-66 (292)
499 PRK08264 short chain dehydroge 87.7 0.72 1.6E-05 41.4 4.3 39 150-188 3-43 (238)
500 COG1249 Lpd Pyruvate/2-oxoglut 87.7 0.65 1.4E-05 47.0 4.3 34 154-187 174-207 (454)
No 1
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=7.5e-76 Score=567.39 Aligned_cols=334 Identities=72% Similarity=1.175 Sum_probs=289.7
Q ss_pred CCCCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccC
Q 019081 8 SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL 87 (346)
Q Consensus 8 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 87 (346)
|.+..+||+++.+.++....+.++.++.++...+...+.+++.+.++++|+++++..++++++++++|+||||++.|+|+
T Consensus 14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 93 (347)
T PLN02928 14 SDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIMQFGVGL 93 (347)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEEECCccc
Confidence 45556689999887665444556667666655555555667778889999988877789999999999999999999999
Q ss_pred CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHH
Q 019081 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE 167 (346)
Q Consensus 88 d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~ 167 (346)
|+||+++|.++||.|+|+|++.++|+.+||||++++||+++|++..+.+.++++.|..+.+.+|.|||+||||+|.||+.
T Consensus 94 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~ 173 (347)
T PLN02928 94 EGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIE 173 (347)
T ss_pred CcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHH
Confidence 99999999999999999999866689999999999999999999999999999999876678999999999999999999
Q ss_pred HHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHH
Q 019081 168 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF 247 (346)
Q Consensus 168 vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~ 247 (346)
+|++|++|||+|++|||+........ +.++...........+...++++++++||+|++|+|+|++|++||+++.
T Consensus 174 vA~~l~afG~~V~~~dr~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~ 248 (347)
T PLN02928 174 LAKRLRPFGVKLLATRRSWTSEPEDG-----LLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEF 248 (347)
T ss_pred HHHHHhhCCCEEEEECCCCChhhhhh-----hccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHH
Confidence 99999999999999999753311100 0000000001111112456899999999999999999999999999999
Q ss_pred HccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHH
Q 019081 248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 327 (346)
Q Consensus 248 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~ 327 (346)
|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||++|||++|||+||+|.++++++.+.++
T Consensus 249 l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~ 328 (347)
T PLN02928 249 LSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG 328 (347)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccccC
Q 019081 328 DVALQLHAGTPLTGLEFVN 346 (346)
Q Consensus 328 ~ni~~~~~g~~~~~~~~~~ 346 (346)
+|+.+|++|+++.|+||||
T Consensus 329 ~nl~~~~~g~~~~~~~~~~ 347 (347)
T PLN02928 329 DAALQLHAGRPLTGIEFVN 347 (347)
T ss_pred HHHHHHHCCCCCCceeecC
Confidence 9999999999999999998
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-76 Score=562.83 Aligned_cols=306 Identities=31% Similarity=0.513 Sum_probs=268.1
Q ss_pred cceEEEeCCCCCCChhHHHHHHhcCCCeEEE---cCCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCC
Q 019081 12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE 88 (346)
Q Consensus 12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 88 (346)
+++++......+. ....+... ...++. ..+.+++.+.+.++|++++..+++++++++++|+||||++.|+|+|
T Consensus 3 ~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gvd 78 (324)
T COG0111 3 MIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVD 78 (324)
T ss_pred cceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEcccccc
Confidence 5677777766543 12222222 122222 2234556788899998877778999999999999999999999999
Q ss_pred ccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHHHH
Q 019081 89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV 166 (346)
Q Consensus 89 ~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~IG~ 166 (346)
|||+++++++||.|+|+|++ |+.+||||++++||++.|+++.+++.+++|.|.. ..+.+|+||||||||+|+||+
T Consensus 79 ~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~ 155 (324)
T COG0111 79 NIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGR 155 (324)
T ss_pred ccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHH
Confidence 99999999999999999997 8999999999999999999999999999999986 467899999999999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHH
Q 019081 167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS 246 (346)
Q Consensus 167 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~ 246 (346)
.+|+++++|||+|++||+...... ..........+|+++|++||||++|+|+|++|+||||++
T Consensus 156 ~va~~l~afgm~v~~~d~~~~~~~-----------------~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~ 218 (324)
T COG0111 156 AVAKRLKAFGMKVIGYDPYSPRER-----------------AGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE 218 (324)
T ss_pred HHHHHHHhCCCeEEEECCCCchhh-----------------hccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHH
Confidence 999999999999999999543310 111122235789999999999999999999999999999
Q ss_pred HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHH
Q 019081 247 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 326 (346)
Q Consensus 247 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~ 326 (346)
.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|++||||++|||++|||+||+|.+++.++.+++
T Consensus 219 ~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~ 298 (324)
T COG0111 219 ELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIV 298 (324)
T ss_pred HHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCC
Q 019081 327 GDVALQLHAGTPLTG 341 (346)
Q Consensus 327 ~~ni~~~~~g~~~~~ 341 (346)
++|+.+|++|.++.|
T Consensus 299 ~~~i~~~l~g~~~~~ 313 (324)
T COG0111 299 AENIVRYLAGGPVVN 313 (324)
T ss_pred HHHHHHHHcCCCCCC
Confidence 999999999998654
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.7e-74 Score=552.72 Aligned_cols=305 Identities=20% Similarity=0.298 Sum_probs=265.3
Q ss_pred ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-C---CCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCC
Q 019081 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V---PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE 88 (346)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 88 (346)
|||+++.+..+ .. .+.++...++.... . +.+++.+.+.++|+++++..++++++++++|+||||+++|+|+|
T Consensus 3 ~~vl~~~~~~~---~~-~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~d 78 (323)
T PRK15409 3 PSVILYKALPD---DL-LQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGYD 78 (323)
T ss_pred ceEEEeCCCCH---HH-HHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceecc
Confidence 68999987532 22 23343322332211 1 12345677899999888767899999999999999999999999
Q ss_pred ccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC-----CccccCCCeEEEEecCH
Q 019081 89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFGN 163 (346)
Q Consensus 89 ~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~-----~~~~l~g~tvgIiG~G~ 163 (346)
+||+++|+++||.|+|+||+ |+.+||||++++||+++|++..+++.+++|+|... .+.+|+||||||||+|+
T Consensus 79 ~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~ 155 (323)
T PRK15409 79 NFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGR 155 (323)
T ss_pred cccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccH
Confidence 99999999999999999998 88999999999999999999999999999999632 47899999999999999
Q ss_pred HHHHHHHHHc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081 164 IGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI 242 (346)
Q Consensus 164 IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~l 242 (346)
||+.+|++++ +|||+|++||++..... .........++++++++||+|++|+|+|++|++|
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~~------------------~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~l 217 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKEA------------------EERFNARYCDLDTLLQESDFVCIILPLTDETHHL 217 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhh------------------HHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhc
Confidence 9999999998 99999999998643210 0000013468999999999999999999999999
Q ss_pred CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHH
Q 019081 243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSM 322 (346)
Q Consensus 243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~ 322 (346)
||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|+++|||++|||++|||+||+|.++++++
T Consensus 218 i~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~ 297 (323)
T PRK15409 218 FGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNM 297 (323)
T ss_pred cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCc
Q 019081 323 AKVVGDVALQLHAGTPLTGL 342 (346)
Q Consensus 323 ~~~~~~ni~~~~~g~~~~~~ 342 (346)
.+.+++|+.+|++|+++.+.
T Consensus 298 ~~~~~~ni~~~~~g~~~~~~ 317 (323)
T PRK15409 298 AACAVDNLIDALQGKVEKNC 317 (323)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999988754
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=6e-73 Score=541.47 Aligned_cols=302 Identities=26% Similarity=0.388 Sum_probs=262.5
Q ss_pred ceEEEeCCCCCCChhHHHHHHh-cCCCeEEEcC-CCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCcc
Q 019081 13 TRVLFCGPHFPASHNYTKEYLQ-NYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV 90 (346)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 90 (346)
|||+++....-.......+.++ .++++.+... +.+++.+.++++|+++.+..++++++++++|+||||+++|+|+|+|
T Consensus 1 m~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 80 (317)
T PRK06487 1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV 80 (317)
T ss_pred CeEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence 3677776532111111122332 3455544332 3356778889999988777789999999999999999999999999
Q ss_pred chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--------CccccCCCeEEEEecC
Q 019081 91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFG 162 (346)
Q Consensus 91 d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvgIiG~G 162 (346)
|+++|.++||.|+|+||+ |+.+||||++++||+++|++..+++.+++|.|... .+.+|.||||||||+|
T Consensus 81 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G 157 (317)
T PRK06487 81 DLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHG 157 (317)
T ss_pred CHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCC
Confidence 999999999999999998 78999999999999999999999999999999642 2468999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081 163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI 242 (346)
Q Consensus 163 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~l 242 (346)
+||+++|+++++|||+|++||++.... .. ...+|++++++||+|++|+|+|++|+||
T Consensus 158 ~IG~~vA~~l~~fgm~V~~~~~~~~~~-------------------~~----~~~~l~ell~~sDiv~l~lPlt~~T~~l 214 (317)
T PRK06487 158 ELGGAVARLAEAFGMRVLIGQLPGRPA-------------------RP----DRLPLDELLPQVDALTLHCPLTEHTRHL 214 (317)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCcc-------------------cc----cccCHHHHHHhCCEEEECCCCChHHhcC
Confidence 999999999999999999999853210 01 2358999999999999999999999999
Q ss_pred CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCC--CCceEEccCCCCCcHHHHH
Q 019081 243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK--FKNVLITPHVGGVTEHSYR 320 (346)
Q Consensus 243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~--~~nviiTPH~a~~t~~~~~ 320 (346)
||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||+ +|||++|||+||+|.+++.
T Consensus 215 i~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~ 294 (317)
T PRK06487 215 IGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQ 294 (317)
T ss_pred cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 019081 321 SMAKVVGDVALQLHAGTPLT 340 (346)
Q Consensus 321 ~~~~~~~~ni~~~~~g~~~~ 340 (346)
++.+.+++|+.+|++|+++.
T Consensus 295 ~~~~~~~~ni~~~~~g~~~~ 314 (317)
T PRK06487 295 RIVGQLAENARAFFAGKPLR 314 (317)
T ss_pred HHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999998764
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=6e-73 Score=540.11 Aligned_cols=299 Identities=22% Similarity=0.370 Sum_probs=259.6
Q ss_pred ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-CCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccc
Q 019081 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVD 91 (346)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 91 (346)
|||+++.+.... . ...+.++....+.... .+.+++.+.++++|+++++..++++++++++|+||||+++|+|+|+||
T Consensus 1 mki~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 78 (311)
T PRK08410 1 MKIVILDAKTLG-D-KDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVD 78 (311)
T ss_pred CeEEEEecCCCC-h-hhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEccccccccc
Confidence 367777653211 1 1123344332232222 224567778899999888777899999999999999999999999999
Q ss_pred hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--------CccccCCCeEEEEecCH
Q 019081 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGN 163 (346)
Q Consensus 92 ~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvgIiG~G~ 163 (346)
+++|+++||.|+|+||+ |+.+||||++++||+++|++..+++.+++|.|... .+++|+||||||||+|+
T Consensus 79 ~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~ 155 (311)
T PRK08410 79 IEYAKKKGIAVKNVAGY---STESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT 155 (311)
T ss_pred HHHHHhCCCEEEcCCCC---CChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence 99999999999999998 88999999999999999999999999999999742 24789999999999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081 164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243 (346)
Q Consensus 164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li 243 (346)
||+++|+++++|||+|++|||+.... ... ....++++++++||+|++|+|+|++|+|||
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~-----------------~~~----~~~~~l~ell~~sDvv~lh~Plt~~T~~li 214 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK-----------------NEE----YERVSLEELLKTSDIISIHAPLNEKTKNLI 214 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc-----------------ccC----ceeecHHHHhhcCCEEEEeCCCCchhhccc
Confidence 99999999999999999999864221 000 124589999999999999999999999999
Q ss_pred CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCC---CceEEccCCCCCcHHHHH
Q 019081 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF---KNVLITPHVGGVTEHSYR 320 (346)
Q Consensus 244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~---~nviiTPH~a~~t~~~~~ 320 (346)
|++.|++||||++|||+|||++||++||++||++|+|+ |+||||++||+++++|||++ |||++|||+||+|.++..
T Consensus 215 ~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~ 293 (311)
T PRK08410 215 AYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARK 293 (311)
T ss_pred CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999987 899999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 019081 321 SMAKVVGDVALQLHAGTP 338 (346)
Q Consensus 321 ~~~~~~~~ni~~~~~g~~ 338 (346)
++.+.+++|+.+|++|++
T Consensus 294 ~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 294 TLIEKVKENIKDFLEGGK 311 (311)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999999864
No 6
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-72 Score=537.55 Aligned_cols=269 Identities=21% Similarity=0.333 Sum_probs=248.0
Q ss_pred CCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHH
Q 019081 45 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124 (346)
Q Consensus 45 ~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~ 124 (346)
+.+++.+.++++|+++++..++++++++++|+||||+++|+|+|+||+++|.++||.|+|+||+ |+.+||||++++|
T Consensus 34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~ 110 (314)
T PRK06932 34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI 110 (314)
T ss_pred ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence 3466778889999888777789999999999999999999999999999999999999999998 7899999999999
Q ss_pred HHHHHhHHHHHHHHHhcccCCC--------CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccccc
Q 019081 125 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS 196 (346)
Q Consensus 125 l~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 196 (346)
|++.|++..+++.++++.|... .+.+|+||||||||+|.||+++|+++++|||+|++||++....
T Consensus 111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~------- 183 (314)
T PRK06932 111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV------- 183 (314)
T ss_pred HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc-------
Confidence 9999999999999999999642 3468999999999999999999999999999999999753210
Q ss_pred chhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 197 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
. . ....+|++++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||+
T Consensus 184 ------------~-~--~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 184 ------------C-R--EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred ------------c-c--cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 0 0 123589999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEecCCCCCCCCCCCCC----CCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 019081 277 CGHLGGLGIDVAWTEPFDPNDPIL----KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 338 (346)
Q Consensus 277 ~g~i~ga~lDV~~~EPl~~~~pL~----~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~ 338 (346)
+|+|+||+||||++||+++++||| .+|||++|||+||+|.++++++.+.+++|+.+|++|.+
T Consensus 249 ~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 249 NGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred cCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999 49999999999999999999999999999999998753
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=3.7e-71 Score=527.66 Aligned_cols=273 Identities=30% Similarity=0.474 Sum_probs=251.6
Q ss_pred CcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHH
Q 019081 48 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126 (346)
Q Consensus 48 ~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~ 126 (346)
++.+..+++|++++. ..++++++++++|+||+|+..|+||||||+++|+++||.|+|+|++ ++.+||||++++||+
T Consensus 37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa 113 (324)
T COG1052 37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA 113 (324)
T ss_pred HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence 346778999998886 7899999999999999999999999999999999999999999999 669999999999999
Q ss_pred HHHhHHHHHHHHHhcccCC------CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhh
Q 019081 127 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA 200 (346)
Q Consensus 127 ~~R~~~~~~~~~~~~~~~~------~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~ 200 (346)
+.|++.+.++.+|+|.|.. ..+.+++|||+||||+|+||+++|+++++|||+|++|||+..+. .
T Consensus 114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~-~--------- 183 (324)
T COG1052 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE-A--------- 183 (324)
T ss_pred HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChH-H---------
Confidence 9999999999999999864 45789999999999999999999999999999999999976421 0
Q ss_pred hcccccccccccc-CCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC
Q 019081 201 VKNGIIDDLVDEK-GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 279 (346)
Q Consensus 201 ~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~ 279 (346)
.... ..+.++++++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+
T Consensus 184 ---------~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~ 254 (324)
T COG1052 184 ---------EKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGK 254 (324)
T ss_pred ---------HhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC
Confidence 0111 134569999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCCCCCCCc---eEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081 280 LGGLGIDVAWTEPFDPNDPILKFKN---VLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342 (346)
Q Consensus 280 i~ga~lDV~~~EPl~~~~pL~~~~n---viiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 342 (346)
|+|||||||+.||.+.++||+.++| |++|||+|++|.+++.+|++.+++|+..|++|+.+.+.
T Consensus 255 i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~ 320 (324)
T COG1052 255 IAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNE 320 (324)
T ss_pred cceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999988999998877 99999999999999999999999999999999988764
No 8
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=4.1e-70 Score=525.20 Aligned_cols=303 Identities=27% Similarity=0.434 Sum_probs=262.4
Q ss_pred ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc----CCCCCcccccCcceEEEEeC-CCCCHHHHhcCCCCeEEEEcCccC
Q 019081 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL 87 (346)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~ 87 (346)
+||+++.+..+ ... +.++....+.+.. .+.+++.+.++++|+++++. .++++++++++|+||||+++|+|+
T Consensus 3 ~kil~~~~~~~---~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~ 78 (333)
T PRK13243 3 PKVFITREIPE---NGI-EMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY 78 (333)
T ss_pred ceEEEECCCCH---HHH-HHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence 67888865422 222 2333321232221 12344667789999988753 589999999999999999999999
Q ss_pred CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC---------CccccCCCeEEE
Q 019081 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFI 158 (346)
Q Consensus 88 d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~---------~~~~l~g~tvgI 158 (346)
|+||+++|+++||.|+|+||+ |+.+||||++++||+++|++..+++.+++|.|... .+.+|+||||||
T Consensus 79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI 155 (333)
T PRK13243 79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI 155 (333)
T ss_pred cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence 999999999999999999998 88999999999999999999999999999999631 367999999999
Q ss_pred EecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCc
Q 019081 159 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNK 237 (346)
Q Consensus 159 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~ 237 (346)
||+|.||+.+|+++++|||+|++||++..... ....+ ...++++++++||+|++|+|+|+
T Consensus 156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-------------------~~~~~~~~~~l~ell~~aDiV~l~lP~t~ 216 (333)
T PRK13243 156 IGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-------------------EKELGAEYRPLEELLRESDFVSLHVPLTK 216 (333)
T ss_pred ECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-------------------HHHcCCEecCHHHHHhhCCEEEEeCCCCh
Confidence 99999999999999999999999998653210 00111 24589999999999999999999
Q ss_pred cccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHH
Q 019081 238 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEH 317 (346)
Q Consensus 238 ~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~ 317 (346)
+|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||+|.+
T Consensus 217 ~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e 295 (333)
T PRK13243 217 ETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFE 295 (333)
T ss_pred HHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHH
Confidence 999999999999999999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081 318 SYRSMAKVVGDVALQLHAGTPLTGL 342 (346)
Q Consensus 318 ~~~~~~~~~~~ni~~~~~g~~~~~~ 342 (346)
+..++.+.+++|+.+|++|+++.|.
T Consensus 296 ~~~~~~~~~~~ni~~~~~g~~~~~~ 320 (333)
T PRK13243 296 AREGMAELVAENLIAFKRGEVPPTL 320 (333)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999988653
No 9
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-69 Score=532.66 Aligned_cols=308 Identities=25% Similarity=0.348 Sum_probs=266.4
Q ss_pred CCCCCcceEEEeCCCCCCChhHHHHHHhcCCCe-EEEc----CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEE
Q 019081 7 SSDKNITRVLFCGPHFPASHNYTKEYLQNYPSI-QVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLI 80 (346)
Q Consensus 7 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I 80 (346)
|-.+.||||+++.+..+. ..+.++.. ++ ++.. .+.+++.+.++++|+++++ ..++++++++++|+||||
T Consensus 5 ~~~~~~~~ili~~~~~~~----~~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I 79 (409)
T PRK11790 5 SLPKDKIKFLLLEGVHQS----AVEVLRAA-GYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAI 79 (409)
T ss_pred CCCCCCeEEEEECCCCHH----HHHHHHhc-CCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEE
Confidence 445667899998654321 22334332 22 3322 2334666788999988765 458999999999999999
Q ss_pred EEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CccccCCCeEEE
Q 019081 81 MQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFI 158 (346)
Q Consensus 81 ~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvgI 158 (346)
+++|+|+|+||+++|+++||.|+|+||+ |+.+||||++++||++.|++..+++.+++|+|... .+.+|.||||||
T Consensus 80 ~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGI 156 (409)
T PRK11790 80 GCFCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGI 156 (409)
T ss_pred EECceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEE
Confidence 9999999999999999999999999998 88999999999999999999999999999999753 478999999999
Q ss_pred EecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCcc
Q 019081 159 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238 (346)
Q Consensus 159 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~ 238 (346)
||+|+||+++|+++++|||+|++||++..... ... ....++++++++||+|++|||+|++
T Consensus 157 iG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~-----------------~~~---~~~~~l~ell~~sDiVslh~Plt~~ 216 (409)
T PRK11790 157 VGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL-----------------GNA---RQVGSLEELLAQSDVVSLHVPETPS 216 (409)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEECCCccccc-----------------CCc---eecCCHHHHHhhCCEEEEcCCCChH
Confidence 99999999999999999999999998532100 000 0135899999999999999999999
Q ss_pred ccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC----CCCCCCCCceEEccCCCCC
Q 019081 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP----NDPILKFKNVLITPHVGGV 314 (346)
Q Consensus 239 T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~----~~pL~~~~nviiTPH~a~~ 314 (346)
|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. ++|||++|||++|||+||+
T Consensus 217 T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~ 296 (409)
T PRK11790 217 TKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGS 296 (409)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCC
Confidence 999999999999999999999999999999999999999999999999999999976 4799999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081 315 TEHSYRSMAKVVGDVALQLHAGTPLTGL 342 (346)
Q Consensus 315 t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 342 (346)
|.++..++.+.+++|+.+|++|+++.+.
T Consensus 297 t~ea~~~~~~~~~~nl~~~~~~~~~~~~ 324 (409)
T PRK11790 297 TQEAQENIGLEVAGKLVKYSDNGSTLSA 324 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence 9999999999999999999999887653
No 10
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=3e-69 Score=524.75 Aligned_cols=278 Identities=31% Similarity=0.460 Sum_probs=253.2
Q ss_pred CCcccccCcceEEEEeC---CCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHH
Q 019081 47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (346)
Q Consensus 47 ~~~~~~~~~~d~~i~~~---~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~ 123 (346)
+++.+.++++|++|+.. .++++++|+++|+||||+++|+|+||||+++|.++||.|+|+||+ |+.+||||++++
T Consensus 89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l 165 (386)
T PLN03139 89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR 165 (386)
T ss_pred HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence 35667889999988753 369999999999999999999999999999999999999999998 889999999999
Q ss_pred HHHHHHhHHHHHHHHHhcccCC----CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchh
Q 019081 124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199 (346)
Q Consensus 124 ~l~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~ 199 (346)
||++.|++..+++.+++|.|.. ..+.+|.||||||||+|+||+++|+++++|||+|++||++.....
T Consensus 166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~--------- 236 (386)
T PLN03139 166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE--------- 236 (386)
T ss_pred HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh---------
Confidence 9999999999999999999963 246799999999999999999999999999999999998753210
Q ss_pred hhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
.....+ ...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++
T Consensus 237 ---------~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 237 ---------LEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred ---------hHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 011111 235899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 019081 278 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFV 345 (346)
Q Consensus 278 g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~~~ 345 (346)
|+|+||+||||++||+|++||||.+|||++|||+||.|.+++.++.+.+++|+.+|++|+++...++|
T Consensus 308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i 375 (386)
T PLN03139 308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYI 375 (386)
T ss_pred CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999987665544
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=6.5e-69 Score=522.70 Aligned_cols=276 Identities=30% Similarity=0.454 Sum_probs=253.0
Q ss_pred CCcccccCcceEEEEe---CCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHH
Q 019081 47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (346)
Q Consensus 47 ~~~~~~~~~~d~~i~~---~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~ 123 (346)
+++.+.++++|++|+. ..++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+ |+.+||||++++
T Consensus 82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l 158 (385)
T PRK07574 82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM 158 (385)
T ss_pred HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence 4567788999998874 3479999999999999999999999999999999999999999997 889999999999
Q ss_pred HHHHHHhHHHHHHHHHhcccCCC----CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchh
Q 019081 124 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199 (346)
Q Consensus 124 ~l~~~R~~~~~~~~~~~~~~~~~----~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~ 199 (346)
||+++|++..+++.++++.|... .+.+|.|+||||||+|+||+.+|++|++|||+|++|||+.....
T Consensus 159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~--------- 229 (385)
T PRK07574 159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE--------- 229 (385)
T ss_pred HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchh---------
Confidence 99999999999999999999742 46789999999999999999999999999999999998753210
Q ss_pred hhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
.....+ ...++++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++
T Consensus 230 ---------~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 230 ---------VEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ---------hHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 000111 236899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q 019081 278 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLE 343 (346)
Q Consensus 278 g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~ 343 (346)
|+|+||+||||++||+|++||||++|||++|||+||+|.++++++.+.+++|+.+|++|+++.|..
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~ 366 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEY 366 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998853
No 12
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=7.7e-68 Score=516.19 Aligned_cols=320 Identities=24% Similarity=0.297 Sum_probs=260.3
Q ss_pred CcceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-------CCCCCccccc-CcceEEEEe-CCCCCHHHHhcCCC--CeE
Q 019081 11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-------VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ--MKL 79 (346)
Q Consensus 11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~d~~i~~-~~~~~~~~l~~~~~--Lk~ 79 (346)
-+++|+++.+..+. .. .+.++.. ++++.. .+.+++.+.+ .++|+++++ ..++++++++++|+ ||+
T Consensus 14 ~~~~v~~~~~~~~~--~~-~~~L~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~ 89 (386)
T PLN02306 14 GKYRVVSTKPMPGT--RW-INLLVDQ-DCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKA 89 (386)
T ss_pred CCceEEEeCCCCcH--HH-HHHHHhc-CceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceE
Confidence 35688888765321 11 2333332 223321 2345566666 569988875 46899999999995 699
Q ss_pred EEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCccccCCC
Q 019081 80 IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGK 154 (346)
Q Consensus 80 I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~ 154 (346)
|+++|+|+|+||+++|+++||.|+|+||+ |+.+||||++++||++.|++..+++.+++|.|.. ..|.+|.||
T Consensus 90 I~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gk 166 (386)
T PLN02306 90 FSNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQ 166 (386)
T ss_pred EEECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCC
Confidence 99999999999999999999999999998 8899999999999999999999999999998742 246899999
Q ss_pred eEEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEE
Q 019081 155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC 231 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~ 231 (346)
||||||+|+||+++|++++ +|||+|++||++.......... .+.. ........... ...+|++++++||+|++
T Consensus 167 tvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~--~~~~--~l~~~~~~~~~~~~~~~L~ell~~sDiV~l 242 (386)
T PLN02306 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT--AYGQ--FLKANGEQPVTWKRASSMEEVLREADVISL 242 (386)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh--hhcc--cccccccccccccccCCHHHHHhhCCEEEE
Confidence 9999999999999999985 9999999999875321000000 0000 00000000000 12589999999999999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCC
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHV 311 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~ 311 (346)
|+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+ +++|||++|||++|||+
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~~pNVilTPHi 321 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLADMKNAVVVPHI 321 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhhCCCEEECCcc
Confidence 99999999999999999999999999999999999999999999999999999999999997 46899999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081 312 GGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342 (346)
Q Consensus 312 a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 342 (346)
||+|.++++++.+.+++|+.+|++|+++.|.
T Consensus 322 ag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~ 352 (386)
T PLN02306 322 ASASKWTREGMATLAALNVLGKLKGYPVWGD 352 (386)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 9999999999999999999999999998763
No 13
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-67 Score=530.39 Aligned_cols=304 Identities=32% Similarity=0.513 Sum_probs=265.6
Q ss_pred ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc---CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCC
Q 019081 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE 88 (346)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d 88 (346)
|||+++.+..+. ..+.++..+++++.. .+.+++.+.++++|+++++ ..++++++++++|+||||+++|+|+|
T Consensus 1 m~ili~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 76 (526)
T PRK13581 1 MKVLVSDPISPA----GLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD 76 (526)
T ss_pred CeEEEeCCCCHH----HHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence 478888754321 223444434555542 2345677788999998875 45899999999999999999999999
Q ss_pred ccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHHHH
Q 019081 89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV 166 (346)
Q Consensus 89 ~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~IG~ 166 (346)
+||+++|+++||.|+|+|++ |+.+||||++++||+++|+++.+++.+++|.|.. ..+.+|.||||||||+|+||+
T Consensus 77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~ 153 (526)
T PRK13581 77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS 153 (526)
T ss_pred cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence 99999999999999999998 8899999999999999999999999999999974 357899999999999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHH
Q 019081 167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS 246 (346)
Q Consensus 167 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~ 246 (346)
.+|+++++|||+|++||++..... .........++++++++||+|++|+|+|++|+++|+++
T Consensus 154 ~vA~~l~~fG~~V~~~d~~~~~~~------------------~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~ 215 (526)
T PRK13581 154 EVAKRAKAFGMKVIAYDPYISPER------------------AAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAE 215 (526)
T ss_pred HHHHHHHhCCCEEEEECCCCChhH------------------HHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHH
Confidence 999999999999999998643210 00000123489999999999999999999999999999
Q ss_pred HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHH
Q 019081 247 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 326 (346)
Q Consensus 247 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~ 326 (346)
.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+|++|.+++.++.+.+
T Consensus 216 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~ 294 (526)
T PRK13581 216 ELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQV 294 (526)
T ss_pred HHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 8999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCc
Q 019081 327 GDVALQLHAGTPLTGL 342 (346)
Q Consensus 327 ~~ni~~~~~g~~~~~~ 342 (346)
++|+.+|++|+++.|.
T Consensus 295 ~~ni~~~~~g~~~~~~ 310 (526)
T PRK13581 295 AEQVIDALRGGPVPNA 310 (526)
T ss_pred HHHHHHHHcCCCcCce
Confidence 9999999999988764
No 14
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=1.1e-66 Score=528.66 Aligned_cols=275 Identities=30% Similarity=0.517 Sum_probs=251.4
Q ss_pred CCCCcccccCcceEEEEeC-CCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHH
Q 019081 45 PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (346)
Q Consensus 45 ~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~ 123 (346)
+.+++.+.++++|+++++. .++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+ |+.+||||++++
T Consensus 30 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l 106 (525)
T TIGR01327 30 SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTG---NTISAAEHALAM 106 (525)
T ss_pred CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCc---ChHHHHHHHHHH
Confidence 3456778889999988754 589999999999999999999999999999999999999999998 889999999999
Q ss_pred HHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhh
Q 019081 124 MLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV 201 (346)
Q Consensus 124 ~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~ 201 (346)
||+++|+++.+++.+++|+|.. ..+.+|+||||||||+|+||+++|++|++|||+|++||++.....
T Consensus 107 ~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~----------- 175 (525)
T TIGR01327 107 LLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER----------- 175 (525)
T ss_pred HHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-----------
Confidence 9999999999999999999974 357899999999999999999999999999999999998632210
Q ss_pred ccccccccccccC-C-cCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC
Q 019081 202 KNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 279 (346)
Q Consensus 202 ~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~ 279 (346)
....+ . ..++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+
T Consensus 176 --------~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 247 (525)
T TIGR01327 176 --------AEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGH 247 (525)
T ss_pred --------HHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCC
Confidence 00111 1 2479999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081 280 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342 (346)
Q Consensus 280 i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 342 (346)
|+||+||||++||+ +++|||++|||++|||+|++|.+++.++.+.+++|+.+|++|+++.|.
T Consensus 248 i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~ 309 (525)
T TIGR01327 248 VRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNA 309 (525)
T ss_pred eeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence 99999999999995 589999999999999999999999999999999999999999988653
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-66 Score=497.65 Aligned_cols=306 Identities=20% Similarity=0.320 Sum_probs=266.9
Q ss_pred cceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCC---CCCcccccCcceEEEEe-CCCCCHHHHhcCC--CCeEEEEcCc
Q 019081 12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV 85 (346)
Q Consensus 12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~--~Lk~I~~~~~ 85 (346)
||||++++.. +.+..+..++++.+ ++++...+ .++..+.+.++|+++++ ..++++++++++| +||+|++.|+
T Consensus 1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~ 78 (330)
T PRK12480 1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA 78 (330)
T ss_pred CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence 5899999876 34466666666665 56555422 23456788999988876 4689999999997 8999999999
Q ss_pred cCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhccc--CC-CCccccCCCeEEEEecC
Q 019081 86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GV-PTGETLLGKTVFILGFG 162 (346)
Q Consensus 86 G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~--~~-~~~~~l~g~tvgIiG~G 162 (346)
|+|+||+++|+++||.|+|+||+ ++.+||||++++||+++|++..+++.++++.| .. ..+++|+|++|||||+|
T Consensus 79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G 155 (330)
T PRK12480 79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG 155 (330)
T ss_pred ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence 99999999999999999999998 78999999999999999999999999999865 33 35789999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081 163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI 242 (346)
Q Consensus 163 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~l 242 (346)
.||+++|++|++|||+|++||++..... .... ...++++++++||+|++|+|++++|+++
T Consensus 156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~~-----------------~~~~---~~~~l~ell~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 156 RIGAATAKIYAGFGATITAYDAYPNKDL-----------------DFLT---YKDSVKEAIKDADIISLHVPANKESYHL 215 (330)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChhHhh-----------------hhhh---ccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence 9999999999999999999998753210 0000 1248999999999999999999999999
Q ss_pred CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCC-------------CCCCCCCCCceEEcc
Q 019081 243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-------------PNDPILKFKNVLITP 309 (346)
Q Consensus 243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-------------~~~pL~~~~nviiTP 309 (346)
++++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ..+|||++|||++||
T Consensus 216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 295 (330)
T PRK12480 216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP 295 (330)
T ss_pred HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence 9999999999999999999999999999999999999999999999999962 124799999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081 310 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342 (346)
Q Consensus 310 H~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 342 (346)
|+|++|.++++++.+.+++|+.+|++|+++.+.
T Consensus 296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~ 328 (330)
T PRK12480 296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETR 328 (330)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 999999999999999999999999999988754
No 16
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-67 Score=484.31 Aligned_cols=300 Identities=28% Similarity=0.450 Sum_probs=265.9
Q ss_pred CcceEEEeCCCCCCChhHHHHHHhcCC-CeEEE-cCCCCCcccccCcceEEEEe-CCCCCHHHHh-cCCCCeEEEEcCcc
Q 019081 11 NITRVLFCGPHFPASHNYTKEYLQNYP-SIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCIS-RANQMKLIMQFGVG 86 (346)
Q Consensus 11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~-~~~~Lk~I~~~~~G 86 (346)
+|.+||++.+.-.. ..+.+++.. .+++. ..+.+++...++++|+++++ .+++++++|+ ...+||+|+++++|
T Consensus 5 ~~~~il~~e~~~~~----~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G 80 (406)
T KOG0068|consen 5 DMRKILVAESLDQA----CIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIG 80 (406)
T ss_pred CcceEEEecccchH----HHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccC
Confidence 34479999876432 234454431 23332 34567888999999988875 7899999999 56799999999999
Q ss_pred CCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHH
Q 019081 87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNI 164 (346)
Q Consensus 87 ~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~I 164 (346)
+||||+++|+++||.|.|+|.+ |+.++||+++++|+++.|++++....+|+|+|.. ..|.+|+|||+||+|+|+|
T Consensus 81 ~dNVDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrI 157 (406)
T KOG0068|consen 81 VDNVDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRI 157 (406)
T ss_pred ccccChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccc
Confidence 9999999999999999999998 8899999999999999999999999999999974 5799999999999999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIV 243 (346)
Q Consensus 165 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~li 243 (346)
|+.+|++++++||+|++||+-.... ....++ ...+++|+++.||+|++|||+||+|++|+
T Consensus 158 GseVA~r~k~~gm~vI~~dpi~~~~-------------------~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~li 218 (406)
T KOG0068|consen 158 GSEVAVRAKAMGMHVIGYDPITPMA-------------------LAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLL 218 (406)
T ss_pred hHHHHHHHHhcCceEEeecCCCchH-------------------HHHhccceeeeHHHHHhhcCEEEEccCCCcchhhcc
Confidence 9999999999999999999864331 122223 45799999999999999999999999999
Q ss_pred CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC--CCCCCCCCceEEccCCCCCcHHHHHH
Q 019081 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP--NDPILKFKNVLITPHVGGVTEHSYRS 321 (346)
Q Consensus 244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~--~~pL~~~~nviiTPH~a~~t~~~~~~ 321 (346)
|.+.|++||+|..+||+|||++||+.||++||++|+++||+||||++||+.. ++.|.+||||++|||+|++|.|++.+
T Consensus 219 n~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~ 298 (406)
T KOG0068|consen 219 NDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSR 298 (406)
T ss_pred CHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999765 78999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 019081 322 MAKVVGDVALQLHAG 336 (346)
Q Consensus 322 ~~~~~~~ni~~~~~g 336 (346)
++..+++++..|..|
T Consensus 299 iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 299 IAIEVAEAVSDYING 313 (406)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999998
No 17
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.1e-64 Score=482.82 Aligned_cols=299 Identities=22% Similarity=0.343 Sum_probs=253.5
Q ss_pred eEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchh
Q 019081 14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93 (346)
Q Consensus 14 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~ 93 (346)
.+++..+... ...+...+.+..|++++..++..+ ..++|+++++.. +.+.++ .|+||||++.|+|+|++|..
T Consensus 2 ~~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~~--~~~~l~-~~~Lk~I~~~~aG~d~i~~~ 73 (312)
T PRK15469 2 DIIFYHPTFD-TQWWIEALRKALPQARVRAWKSGD----NDPADYALVWHP--PVEMLA-GRDLKAVFALGAGVDSILSK 73 (312)
T ss_pred EEEEeCCccC-HHHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeCC--ChHHhc-cCCceEEEEcccccchhhhh
Confidence 6777766532 233444444557888776544433 467898887653 567776 58999999999999999832
Q ss_pred H-----HhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHH
Q 019081 94 A-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVEL 168 (346)
Q Consensus 94 ~-----~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~v 168 (346)
. +.++||.|+|+++. +++.+||||++++||++.|++..+.+.++.+.|....+.++.||||||||+|.||+++
T Consensus 74 ~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~v 151 (312)
T PRK15469 74 LQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKV 151 (312)
T ss_pred hccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHH
Confidence 2 34589999998764 2789999999999999999999999999999998666678999999999999999999
Q ss_pred HHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHH
Q 019081 169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL 248 (346)
Q Consensus 169 A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l 248 (346)
|++|++|||+|++||++..... .........++++++++||+|++|+|+|++|+++|+++.|
T Consensus 152 A~~l~afG~~V~~~~~~~~~~~------------------~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l 213 (312)
T PRK15469 152 AQSLQTWGFPLRCWSRSRKSWP------------------GVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLL 213 (312)
T ss_pred HHHHHHCCCEEEEEeCCCCCCC------------------CceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHH
Confidence 9999999999999998653310 0111123468999999999999999999999999999999
Q ss_pred ccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 019081 249 SSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 328 (346)
Q Consensus 249 ~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ 328 (346)
++||+|++|||+|||++||++||++||++|+|+||+||||++||+|+++|||++|||++|||+||+|.+. ++.+.+.+
T Consensus 214 ~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~ 291 (312)
T PRK15469 214 EQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISR 291 (312)
T ss_pred hcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875 67899999
Q ss_pred HHHHHHcCCCCCCc
Q 019081 329 VALQLHAGTPLTGL 342 (346)
Q Consensus 329 ni~~~~~g~~~~~~ 342 (346)
|+++|.+|+++.|.
T Consensus 292 n~~~~~~g~~~~~~ 305 (312)
T PRK15469 292 TIAQLEKGERVCGQ 305 (312)
T ss_pred HHHHHHcCCCCccc
Confidence 99999999998764
No 18
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=6e-63 Score=475.47 Aligned_cols=303 Identities=21% Similarity=0.347 Sum_probs=258.5
Q ss_pred eEEEeCCCCCCChhHHHHHHhcCCCeEEEc---CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEcCccC
Q 019081 14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVGL 87 (346)
Q Consensus 14 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~G~ 87 (346)
+++++.+ .+..+.+.+.+.+ ++++.. ...++..+.+.++|+++++ ..++++++++++|+ ||+|+++|+|+
T Consensus 5 ~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~ 80 (332)
T PRK08605 5 KIMSVRD---EDAPYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGF 80 (332)
T ss_pred EEEecCH---HHHHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEccccc
Confidence 4444443 2234445555543 444432 2234556778899988775 56899999999997 99999999999
Q ss_pred CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccC--C-CCccccCCCeEEEEecCHH
Q 019081 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFGNI 164 (346)
Q Consensus 88 d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~--~-~~~~~l~g~tvgIiG~G~I 164 (346)
|+||+++|+++||.|+|+||+ |+.+||||++++||+++|++..+++.++++.|. . ..+++|+|++|||||+|.|
T Consensus 81 d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~I 157 (332)
T PRK08605 81 DTYDLELATKYNLIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRI 157 (332)
T ss_pred chhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHH
Confidence 999999999999999999998 789999999999999999999999999998764 2 2478999999999999999
Q ss_pred HHHHHHHH-ccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081 165 GVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243 (346)
Q Consensus 165 G~~vA~~l-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li 243 (346)
|+++|++| ++|||+|++||++..... ..... ...++++++++||+|++|+|+++.|++++
T Consensus 158 G~~vA~~L~~~~g~~V~~~d~~~~~~~----------------~~~~~---~~~~l~ell~~aDvIvl~lP~t~~t~~li 218 (332)
T PRK08605 158 GLAVAKIFAKGYGSDVVAYDPFPNAKA----------------ATYVD---YKDTIEEAVEGADIVTLHMPATKYNHYLF 218 (332)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccHhH----------------Hhhcc---ccCCHHHHHHhCCEEEEeCCCCcchhhhc
Confidence 99999999 799999999998753310 00110 12489999999999999999999999999
Q ss_pred CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCC--CCCCC-----------CCCCCCceEEccC
Q 019081 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPND-----------PILKFKNVLITPH 310 (346)
Q Consensus 244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--l~~~~-----------pL~~~~nviiTPH 310 (346)
+++.++.||+|++|||+|||.++|+++|+++|++|+|+||+||||++|| +|.++ +||++|||++|||
T Consensus 219 ~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPH 298 (332)
T PRK08605 219 NADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPH 298 (332)
T ss_pred CHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCc
Confidence 9999999999999999999999999999999999999999999999998 46665 4999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081 311 VGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342 (346)
Q Consensus 311 ~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 342 (346)
+|++|.++.+++.+.+++|+.+|++|++..+.
T Consensus 299 ia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~ 330 (332)
T PRK08605 299 IAFYTDAAVKNLIVDALDATLEVLQTGTTRLR 330 (332)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999887754
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-61 Score=456.13 Aligned_cols=253 Identities=23% Similarity=0.369 Sum_probs=226.1
Q ss_pred cCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHH
Q 019081 53 IANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132 (346)
Q Consensus 53 ~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~ 132 (346)
..++|++++... +..+++||||++.|+|+|+||+++|+++||.++|. |+ |+.+||||++++||++.|++.
T Consensus 32 ~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~ 101 (303)
T PRK06436 32 YYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNIC 101 (303)
T ss_pred cCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChH
Confidence 457787765432 23368999999999999999999999999888775 54 779999999999999999999
Q ss_pred HHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc
Q 019081 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE 212 (346)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (346)
.+.+.+++|.|....+++|+||||||||+|+||+++|+++++|||+|++|||+.... ....
T Consensus 102 ~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~ 162 (303)
T PRK06436 102 ENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-------------------GISS 162 (303)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-------------------Cccc
Confidence 999999999998766789999999999999999999999999999999999864321 0110
Q ss_pred cCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCC
Q 019081 213 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292 (346)
Q Consensus 213 ~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 292 (346)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|+++||+||||++||
T Consensus 163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP 240 (303)
T PRK06436 163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP 240 (303)
T ss_pred --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence 135899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEccCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 019081 293 FDPNDPILKFKNVLITPHVG-GVTEHSYRSMAKVVGDVALQLHAGTPL 339 (346)
Q Consensus 293 l~~~~pL~~~~nviiTPH~a-~~t~~~~~~~~~~~~~ni~~~~~g~~~ 339 (346)
+++++ .+|||++|||++ ++|.++.+++.+.+++|+.+|+.|+++
T Consensus 241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~~ 285 (303)
T PRK06436 241 IITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKPK 285 (303)
T ss_pred CCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 98776 689999999986 589999999999999999999999873
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=1.3e-60 Score=462.63 Aligned_cols=276 Identities=24% Similarity=0.342 Sum_probs=236.2
Q ss_pred ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCCccc
Q 019081 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD 91 (346)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 91 (346)
|||++.... + +..++++.+.++.... ..+...+.+.++|+++++ ..++++++++ +|+||+|+++++|+||||
T Consensus 1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence 578887643 3 3345555543343332 122234667899998885 4689999996 699999999999999999
Q ss_pred hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHH
Q 019081 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171 (346)
Q Consensus 92 ~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~ 171 (346)
+++++++||.|+|+||+ |+.+||||++++||++.|+ .+.+|.||||||||+|+||+++|++
T Consensus 74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~----------------~g~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAER----------------DGFSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhcc----------------CCCCcCCCEEEEECcCHHHHHHHHH
Confidence 99999999999999998 8899999999999999986 1468999999999999999999999
Q ss_pred HccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCcc----ccCCCCHHH
Q 019081 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSF 247 (346)
Q Consensus 172 l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~----T~~li~~~~ 247 (346)
|++|||+|++||+..... . ......++++++++||+|++|+|+|++ |+||||++.
T Consensus 135 l~a~G~~V~~~dp~~~~~------------------~---~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~ 193 (378)
T PRK15438 135 LEALGIKTLLCDPPRADR------------------G---DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL 193 (378)
T ss_pred HHHCCCEEEEECCccccc------------------c---cccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence 999999999999743210 0 001246899999999999999999996 999999999
Q ss_pred HccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHH
Q 019081 248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 327 (346)
Q Consensus 248 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~ 327 (346)
|++||+|++|||+|||++||++||+++|++|++.||+||||++||+ ++++||..+| ++|||+||+|.+...++..+++
T Consensus 194 l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~ 271 (378)
T PRK15438 194 IRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVF 271 (378)
T ss_pred HhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 5788987665 9999999999999999999999
Q ss_pred HHHHHHHcCCC
Q 019081 328 DVALQLHAGTP 338 (346)
Q Consensus 328 ~ni~~~~~g~~ 338 (346)
+|+.+|+ |++
T Consensus 272 ~~l~~~~-~~~ 281 (378)
T PRK15438 272 EAYSKFI-GHE 281 (378)
T ss_pred HHHHHHH-cCc
Confidence 9999998 444
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.2e-60 Score=462.26 Aligned_cols=278 Identities=19% Similarity=0.319 Sum_probs=240.3
Q ss_pred ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCc-ccccCcceEEEEeC-CCCCHHHHhcCCCCeEEEEcCccCCcc
Q 019081 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV 90 (346)
Q Consensus 13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~i 90 (346)
|||++.... | +.+++++.+..+.. .+..++ .+.++++|++++++ .++++++++ .|+||||+++++|+|||
T Consensus 1 mkI~~d~~~-p----~~~~~~~~~~~v~~--~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~i 72 (381)
T PRK00257 1 MKIVADENI-P----LLDAFFAGFGEIRR--LPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHL 72 (381)
T ss_pred CEEEEecCc-h----hHHHHHhhCCcEEE--cCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCcccccc
Confidence 688888765 3 33455555443333 332233 56789999988764 689999998 58999999999999999
Q ss_pred chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHH
Q 019081 91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK 170 (346)
Q Consensus 91 d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~ 170 (346)
|+++++++||.|+|+||+ |+.+||||++++||++.|+ .+.+|.||||||||+|+||+.+|+
T Consensus 73 D~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~ 133 (381)
T PRK00257 73 DLDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVR 133 (381)
T ss_pred CHHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHH
Confidence 999999999999999998 8999999999999999875 257899999999999999999999
Q ss_pred HHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCc----cccCCCCHH
Q 019081 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKS 246 (346)
Q Consensus 171 ~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~----~T~~li~~~ 246 (346)
++++|||+|++||+..... .. .....++++++++||+|++|+|+|+ .|+||||++
T Consensus 134 ~l~a~G~~V~~~Dp~~~~~------------------~~---~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~ 192 (381)
T PRK00257 134 VLRGLGWKVLVCDPPRQEA------------------EG---DGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA 192 (381)
T ss_pred HHHHCCCEEEEECCccccc------------------cc---CccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHH
Confidence 9999999999999753211 00 0124689999999999999999999 599999999
Q ss_pred HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHH
Q 019081 247 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 326 (346)
Q Consensus 247 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~ 326 (346)
.|++||+|++|||+|||++||++||+++|++|+++||+||||++||+ +++|||.. |+++|||+||+|.++..++.+++
T Consensus 193 ~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~ 270 (381)
T PRK00257 193 FLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQI 270 (381)
T ss_pred HHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 67899985 99999999999999999999999
Q ss_pred HHHHHHHHcCCCCC
Q 019081 327 GDVALQLHAGTPLT 340 (346)
Q Consensus 327 ~~ni~~~~~g~~~~ 340 (346)
.+|+.+|+.+.+..
T Consensus 271 ~~nl~~~~~~~~~~ 284 (381)
T PRK00257 271 YQALCRFFGIPARV 284 (381)
T ss_pred HHHHHHHHcCCCcc
Confidence 99999999887543
No 22
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=2.8e-61 Score=455.47 Aligned_cols=271 Identities=36% Similarity=0.561 Sum_probs=241.5
Q ss_pred cccCcceEEEEe--CCCCCHHHHhcC-CCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHH
Q 019081 51 DVIANYHLCVVK--TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL 127 (346)
Q Consensus 51 ~~~~~~d~~i~~--~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~ 127 (346)
..+.+...++.+ ...++.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+|+. +..+|||++++++|.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil~~ 132 (336)
T KOG0069|consen 56 KRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLLAL 132 (336)
T ss_pred hhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHHHH
Confidence 344444444432 456777777765 9999999999999999999999999999999998 6789999999999999
Q ss_pred HHhHHHHHHHHHhcccC----CCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcc
Q 019081 128 LRKQNEMRMAIEQKKLG----VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN 203 (346)
Q Consensus 128 ~R~~~~~~~~~~~~~~~----~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~ 203 (346)
+|++...++++++|+|. .+.+..+.||||||+|+|+||+.+|++|++||+.+.++.|+......
T Consensus 133 ~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~------------ 200 (336)
T KOG0069|consen 133 LRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEE------------ 200 (336)
T ss_pred HhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhh------------
Confidence 99999999999999994 24578999999999999999999999999999888888886654211
Q ss_pred ccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081 204 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 283 (346)
Q Consensus 204 ~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga 283 (346)
..+......++++++++||+|++|||+|++|+|+||++.|++||+|++|||++||.++|+++|++||++|+|+||
T Consensus 201 -----~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~a 275 (336)
T KOG0069|consen 201 -----AYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGA 275 (336)
T ss_pred -----HHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccc
Confidence 111111357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081 284 GIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342 (346)
Q Consensus 284 ~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 342 (346)
|||||++|| +.++||+.++||++|||+|+.|.+++.+|++.+++|+.+++.|+++...
T Consensus 276 GlDVf~~EP-~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~ 333 (336)
T KOG0069|consen 276 GLDVFEPEP-PVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTP 333 (336)
T ss_pred cccccCCCC-CCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence 999999999 8999999999999999999999999999999999999999999987653
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=1.2e-51 Score=363.99 Aligned_cols=174 Identities=39% Similarity=0.619 Sum_probs=153.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhccc---CCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccc
Q 019081 121 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS 197 (346)
Q Consensus 121 ~~~~l~~~R~~~~~~~~~~~~~~---~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~ 197 (346)
+++||++.|++..+++.++++.| ....+++++|+||||||+|+||+++|+++++|||+|++|||+.....
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~------- 73 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE------- 73 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH-------
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh-------
Confidence 57999999999999999999999 56678999999999999999999999999999999999999765421
Q ss_pred hhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 198 ALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
.....+ ...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus 74 -----------~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 74 -----------GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -----------HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred -----------hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 001111 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCC
Q 019081 277 CGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 312 (346)
Q Consensus 277 ~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a 312 (346)
+|+|+||+||||++||+++++|||++|||++|||+|
T Consensus 143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 999999999999999999999999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=5.2e-32 Score=253.99 Aligned_cols=250 Identities=25% Similarity=0.399 Sum_probs=221.4
Q ss_pred CCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 019081 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 142 (346)
Q Consensus 63 ~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~ 142 (346)
+..++++-+++++.||++.+.+.|+|++|+.+|.+-||.|+|.|+. .-+.+|+-++..+|.++|+-....+..+.+.
T Consensus 82 ~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~ 158 (435)
T KOG0067|consen 82 TITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREGT 158 (435)
T ss_pred ecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhcccc
Confidence 5678999999999999999999999999999999999999999987 3478899999999999999999999999988
Q ss_pred cCCC---------CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc
Q 019081 143 LGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 213 (346)
Q Consensus 143 ~~~~---------~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (346)
|... ....+.|.++|++|+|++|++++.++++||+.|+.||+..... .-...
T Consensus 159 ~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g-------------------~~~~l 219 (435)
T KOG0067|consen 159 CTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDG-------------------IDKSL 219 (435)
T ss_pred eeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhh-------------------hhhhc
Confidence 7532 2346899999999999999999999999999999999865431 11111
Q ss_pred C--CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC
Q 019081 214 G--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291 (346)
Q Consensus 214 ~--~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 291 (346)
+ ..-++++++-++|.+++||-+++.++++|+.-.+++|++|++++|++||+++|+++|.+||++|++.|++
T Consensus 220 g~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa------- 292 (435)
T KOG0067|consen 220 GLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA------- 292 (435)
T ss_pred ccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------
Confidence 1 2346999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC-CCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 019081 292 PFD-PNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG 341 (346)
Q Consensus 292 Pl~-~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~ 341 (346)
|.. ...||.+.||.++|||.+++++.+..++.+.++..+++-+.|+.+..
T Consensus 293 ~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~ 343 (435)
T KOG0067|consen 293 PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDS 343 (435)
T ss_pred CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchh
Confidence 221 34689999999999999999999999999999999999888876643
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.88 E-value=7.8e-22 Score=195.19 Aligned_cols=170 Identities=19% Similarity=0.203 Sum_probs=134.6
Q ss_pred cCccCCccc-hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEec
Q 019081 83 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF 161 (346)
Q Consensus 83 ~~~G~d~id-~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~ 161 (346)
.++|+..+- +....+-+|+|.|+|++ +..+++|+++++++++...+ +|.+ +..++||+|+|+|+
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~------~R~~------~~~LaGKtVgVIG~ 262 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGI------FRAT------DVMIAGKTVVVCGY 262 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHH------HHhc------CCCcCCCEEEEECC
Confidence 466776542 22223468999999998 77999999999999988333 3333 46899999999999
Q ss_pred CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccC
Q 019081 162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241 (346)
Q Consensus 162 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~ 241 (346)
|.||+.+|+++++|||+|+++++++..... .........+++++++.||+|++|+ .|++
T Consensus 263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~-----------------A~~~G~~~~~leell~~ADIVI~at----Gt~~ 321 (476)
T PTZ00075 263 GDVGKGCAQALRGFGARVVVTEIDPICALQ-----------------AAMEGYQVVTLEDVVETADIFVTAT----GNKD 321 (476)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCchhHHH-----------------HHhcCceeccHHHHHhcCCEEEECC----Cccc
Confidence 999999999999999999999876433100 0001112357999999999999984 4788
Q ss_pred CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC
Q 019081 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 295 (346)
Q Consensus 242 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~ 295 (346)
+|+++.|++||+|++|||+||+ |++.++++|+++. ++||++.||...
T Consensus 322 iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred ccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 9999999999999999999999 7889999998754 789999999644
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.83 E-value=3.9e-20 Score=174.82 Aligned_cols=155 Identities=20% Similarity=0.312 Sum_probs=124.0
Q ss_pred CCHHHHhcCCCCeEEEEcCccCCccchh-HHhhCCcEEE------ecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHH
Q 019081 66 LDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI 138 (346)
Q Consensus 66 ~~~~~l~~~~~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~ 138 (346)
+++++++.+| .++...+|+++.|++ +|+++||.|+ |++.+ |+.++||+++++++..
T Consensus 82 l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~---n~~~~Ae~ai~~al~~----------- 144 (287)
T TIGR02853 82 LTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIY---NSIPTAEGAIMMAIEH----------- 144 (287)
T ss_pred ccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEE---ccHhHHHHHHHHHHHh-----------
Confidence 5688998888 377788899999998 9999999999 88776 7899999999877743
Q ss_pred HhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC
Q 019081 139 EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED 218 (346)
Q Consensus 139 ~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (346)
.+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+....... ...........+
T Consensus 145 --------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~--------------~~~g~~~~~~~~ 202 (287)
T TIGR02853 145 --------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI--------------TEMGLIPFPLNK 202 (287)
T ss_pred --------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH--------------HHCCCeeecHHH
Confidence 1357899999999999999999999999999999999875431000 000000012346
Q ss_pred HHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 219 IFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 219 l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
++++++++|+|++|+|.+ +++++.++.||+++++||++..+
T Consensus 203 l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 203 LEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 788999999999999974 77899999999999999998744
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.81 E-value=1.1e-19 Score=152.66 Aligned_cols=98 Identities=24% Similarity=0.397 Sum_probs=75.6
Q ss_pred EEEeCCCCCCChhHHHHHHhc-CCCeEEEc-CCCCCcccccCcceEEEEeCCC-CCHHHHhcCCCCeEEEEcCccCCccc
Q 019081 15 VLFCGPHFPASHNYTKEYLQN-YPSIQVDV-VPISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVD 91 (346)
Q Consensus 15 vl~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~-~~~~~l~~~~~Lk~I~~~~~G~d~id 91 (346)
||++.+..+ ...+.+++ + .+++.. .+.+++.+.++++|+++++... +++++++++|+||||++.|+|+|+||
T Consensus 1 ili~~~~~~----~~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 75 (133)
T PF00389_consen 1 ILITDPLPD----EEIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID 75 (133)
T ss_dssp EEESSS-SH----HHHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred eEEeccCCH----HHHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence 567765533 23445555 3 444433 2345677889999999997655 99999999999999999999999999
Q ss_pred hhHHhhCCcEEEecCCCCCCChhhHHHHH
Q 019081 92 INAATRCGIKVARIPGDVTGNAASCAELT 120 (346)
Q Consensus 92 ~~~~~~~gI~v~n~p~~~~~na~~vAE~~ 120 (346)
+++|+++||.|+|+||+ ++.+||||+
T Consensus 76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a 101 (133)
T PF00389_consen 76 LEAAKERGIPVTNVPGY---NAEAVAEHA 101 (133)
T ss_dssp HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence 99999999999999998 889999999
No 28
>PLN02494 adenosylhomocysteinase
Probab=99.67 E-value=1.1e-16 Score=158.28 Aligned_cols=121 Identities=20% Similarity=0.256 Sum_probs=101.6
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 228 (346)
..+.|++|+|+|+|.||+.+|+++++||++|+++++++.+... .........+++++++.+|+
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e-----------------A~~~G~~vv~leEal~~ADV 312 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ-----------------ALMEGYQVLTLEDVVSEADI 312 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH-----------------HHhcCCeeccHHHHHhhCCE
Confidence 3579999999999999999999999999999999886543110 00001123478899999999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCC-CCCCCHHHHHHH--HHhCCCeEEEEecCCCC
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR-GGLLDYEAIAHY--LECGHLGGLGIDVAWTE 291 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~E 291 (346)
|+. +..|+++++.+.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +.+|+|+.|
T Consensus 313 VI~----tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 313 FVT----TTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred EEE----CCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 997 567889999999999999999999999 679999999998 9999998 899999876
No 29
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.62 E-value=3.2e-15 Score=142.06 Aligned_cols=172 Identities=19% Similarity=0.297 Sum_probs=126.9
Q ss_pred cccCcceEEEEeCC-----------------CCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCC---CC
Q 019081 51 DVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGD---VT 110 (346)
Q Consensus 51 ~~~~~~d~~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~ 110 (346)
+.+.++|+++.... .++++.++.+|++..+. .|.+.++++ +.|.++||.+.+.+.. ..
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 44678898875311 13688999999997544 588889988 7899999999987642 01
Q ss_pred CChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccc
Q 019081 111 GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190 (346)
Q Consensus 111 ~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~ 190 (346)
.|+.++||.++.+.+. + .+.++.|++++|+|+|.+|+.+++.|+.+|++|+++||+.....
T Consensus 129 ~ns~~~aegav~~a~~---~----------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~ 189 (296)
T PRK08306 129 LNSIPTAEGAIMMAIE---H----------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLA 189 (296)
T ss_pred hccHhHHHHHHHHHHH---h----------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 2678888886654331 0 13567899999999999999999999999999999999754311
Q ss_pred ccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
... ..........++.+.++++|+|+.++|. .+++++.++.|++|+++||++-
T Consensus 190 ~~~--------------~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 190 RIT--------------EMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHH--------------HcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 000 0000001224677889999999999884 4788999999999999999974
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.58 E-value=3.6e-15 Score=146.40 Aligned_cols=120 Identities=21% Similarity=0.269 Sum_probs=99.8
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 227 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 227 (346)
..+.|++|+|+|+|.||+.+|++++++|++|+++|+++.+.... ...+ ...+++++++.+|
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A------------------~~~G~~v~~leeal~~aD 252 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA------------------AMDGFRVMTMEEAAKIGD 252 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH------------------HhcCCEeCCHHHHHhcCC
Confidence 35899999999999999999999999999999998765431100 0111 2346788999999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHHHHhCCCeEEEEecCCC
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHLGGLGIDVAWT 290 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i~ga~lDV~~~ 290 (346)
+|+.+. .+.++|+.+.|..||+|++|+|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 253 VVItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 253 IFITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred EEEECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 998743 4688999999999999999999999998 9999999999888888899999873
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.53 E-value=1.1e-14 Score=137.94 Aligned_cols=93 Identities=28% Similarity=0.389 Sum_probs=76.3
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 227 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 227 (346)
..|+||||||||+|.||+++|++|+++|++|+++++...+. ..+...+ ...++++++++||
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~------------------~~A~~~G~~v~sl~Eaak~AD 73 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSF------------------EVAKADGFEVMSVSEAVRTAQ 73 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhh------------------HHHHHcCCEECCHHHHHhcCC
Confidence 57999999999999999999999999999999998653221 0111111 2358999999999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~ 260 (346)
+|++|+|+ ++|+++++.+.+..||+|++|+-.
T Consensus 74 VV~llLPd-~~t~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 74 VVQMLLPD-EQQAHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred EEEEeCCC-hHHHHHHHHHHHhcCCCCCEEEEC
Confidence 99999996 778999999999999999987644
No 32
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.38 E-value=1.3e-12 Score=129.20 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=105.5
Q ss_pred cCccCCcc-chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEec
Q 019081 83 FGVGLEGV-DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF 161 (346)
Q Consensus 83 ~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~ 161 (346)
.++|+..+ .+....+.+++|.|++...+ .+.-|...+.-.+....+. +. .+..+.|++|+|+|+
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~------ra------t~~~l~Gk~VlViG~ 220 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIK------RA------TNVLIAGKVVVVAGY 220 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHH------Hh------ccCCCCCCEEEEECC
Confidence 46777665 22223457899999988733 3322222111111111110 00 124589999999999
Q ss_pred CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccC
Q 019081 162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241 (346)
Q Consensus 162 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~ 241 (346)
|.||+.+|++|+++|++|+++|+++.+... .........+++++++.+|+|+.+. .+.+
T Consensus 221 G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~-----------------A~~~G~~v~~l~eal~~aDVVI~aT----G~~~ 279 (425)
T PRK05476 221 GDVGKGCAQRLRGLGARVIVTEVDPICALQ-----------------AAMDGFRVMTMEEAAELGDIFVTAT----GNKD 279 (425)
T ss_pred CHHHHHHHHHHHhCCCEEEEEcCCchhhHH-----------------HHhcCCEecCHHHHHhCCCEEEECC----CCHH
Confidence 999999999999999999999987643210 0000012346889999999998754 4577
Q ss_pred CCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH
Q 019081 242 IVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH 273 (346)
Q Consensus 242 li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~ 273 (346)
+|+.+.|..||+|++++|+++... +|.++|.+
T Consensus 280 vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 280 VITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 999999999999999999999886 78877754
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.28 E-value=1.4e-12 Score=113.23 Aligned_cols=115 Identities=19% Similarity=0.338 Sum_probs=86.2
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC 232 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~ 232 (346)
++|||||+|.+|+.+|++|...|++|.+|||+..+.. .+..... ...++.|++++||+|+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~-----------------~~~~~g~~~~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAE-----------------ALAEAGAEVADSPAEAAEQADVVILC 64 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHH-----------------HHHHTTEEEESSHHHHHHHBSEEEE-
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhh-----------------hhHHhhhhhhhhhhhHhhcccceEee
Confidence 5899999999999999999999999999998764421 1111111 346899999999999999
Q ss_pred ecCCccccCCCCH-HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 233 LSLNKQTAGIVNK-SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 233 lPlt~~T~~li~~-~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
+|..++++.++.. +.++.+++|.++||++....-....+.+.+.+..+. .+|.
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred cccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 9987877776532 367889999999999999999999999999876654 5675
No 34
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.27 E-value=8.9e-12 Score=116.94 Aligned_cols=115 Identities=20% Similarity=0.302 Sum_probs=97.3
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~ 231 (346)
.+||+||+|.||..+|++|..-|+.|.+|||++.+.. +.....+ ...+..|+.++||+|++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~-----------------~~~~~~Ga~~a~s~~eaa~~aDvVit 63 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAA-----------------ELLAAAGATVAASPAEAAAEADVVIT 63 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhh-----------------HHHHHcCCcccCCHHHHHHhCCEEEE
Confidence 4799999999999999999999999999999876521 1111212 34677899999999999
Q ss_pred eecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 232 CLSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 232 ~lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
|+|..++.+.++. ...++.||+|+++||+|.-+.-....+.++++++.+. .||.
T Consensus 64 mv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 64 MLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred ecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 9999999888875 5688999999999999999999999999999998875 5674
No 35
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.27 E-value=9.8e-12 Score=106.99 Aligned_cols=105 Identities=23% Similarity=0.354 Sum_probs=71.7
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (346)
...+.||++.|+|||.+|+.+|+.|+++|++|++++..+....+. .-......+++++++++|
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA-----------------~~dGf~v~~~~~a~~~ad 80 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQA-----------------AMDGFEVMTLEEALRDAD 80 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH-----------------HHTT-EEE-HHHHTTT-S
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHh-----------------hhcCcEecCHHHHHhhCC
Confidence 356899999999999999999999999999999999865432110 001112357999999999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH 273 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~ 273 (346)
+++.+. -.++++..+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus 81 i~vtaT----G~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 81 IFVTAT----GNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp EEEE-S----SSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred EEEECC----CCccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 998864 3467899999999999999999987655 56655544
No 36
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.22 E-value=1.8e-11 Score=116.03 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=87.8
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEee
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~l 233 (346)
+|||||+|.||+.+|+.+...|++|++||++..+.. .+..... ...+..+++++||+|++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVAD-----------------ELLAAGAVTAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHCCCcccCCHHHHHhcCCEEEEec
Confidence 589999999999999999999999999998764311 1111111 2357889999999999999
Q ss_pred cCCccccCCC-C-HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081 234 SLNKQTAGIV-N-KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 281 (346)
Q Consensus 234 Plt~~T~~li-~-~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 281 (346)
|.++.++.++ . ...+..+++|.++||+|+....+.+++.+.+++..+.
T Consensus 64 p~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 64 PDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred CCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 9877777664 3 3357789999999999999998889999999987554
No 37
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.20 E-value=3.1e-11 Score=114.55 Aligned_cols=111 Identities=16% Similarity=0.274 Sum_probs=88.5
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC 232 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~ 232 (346)
++|||||+|.||+.+|+.+...|++|++||++..+.. ....... ...++++++++||+|+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~-----------------~~~~~g~~~~~~~~e~~~~~d~vi~~ 65 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVA-----------------EVIAAGAETASTAKAVAEQCDVIITM 65 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHCCCeecCCHHHHHhcCCEEEEe
Confidence 4799999999999999999999999999998754311 0111111 235788999999999999
Q ss_pred ecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081 233 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 281 (346)
Q Consensus 233 lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 281 (346)
+|.+..++.++. ...+..+++|.++||+|+......+++.+.+.+..+.
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 998887777764 3467789999999999999988888999999887654
No 38
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.17 E-value=5.9e-11 Score=112.90 Aligned_cols=115 Identities=15% Similarity=0.230 Sum_probs=92.2
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC 232 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~ 232 (346)
++|||||+|.||..+|+.+...|++|++||++..+.. .+..... ...+..+++++||+|+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~-----------------~~~~~g~~~~~s~~~~~~~aDvVi~~ 64 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVD-----------------ALVDKGATPAASPAQAAAGAEFVITM 64 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHcCCcccCCHHHHHhcCCEEEEe
Confidence 3799999999999999999999999999999764421 1111111 345788899999999999
Q ss_pred ecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 233 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 233 lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
+|....++.++. ...+..+++|.++||+|++.....+.+.+.+.+..+. .+|.
T Consensus 65 vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 65 LPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred cCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 998776776654 2456778999999999999999999999999988776 4675
No 39
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.16 E-value=4.7e-11 Score=114.50 Aligned_cols=123 Identities=26% Similarity=0.369 Sum_probs=87.1
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 227 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 227 (346)
..|.|++|||||+|+||+++|+.|+.+|++|++++++..+... .+...+ ...+..+++++||
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~-----------------~A~~~G~~~~s~~eaa~~AD 75 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWK-----------------KAEADGFEVLTVAEAAKWAD 75 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHH-----------------HHHHCCCeeCCHHHHHhcCC
Confidence 5689999999999999999999999999999988765432110 111111 2348899999999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC-eEEEEecCCCCCCCCCCCC
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL-GGLGIDVAWTEPFDPNDPI 299 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i-~ga~lDV~~~EPl~~~~pL 299 (346)
+|++++|.+.. ..+++++.+..|++|++| -.+.|--+.. +.+ -+...||+...|-.|.+.+
T Consensus 76 VVvLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~---------~~~~p~~~~~Vi~vaPn~Pg~~v 137 (330)
T PRK05479 76 VIMILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIHF---------GQIVPPADVDVIMVAPKGPGHLV 137 (330)
T ss_pred EEEEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChhh---------ceeccCCCCcEEEeCCCCCchhh
Confidence 99999997654 777777788899999988 5555521111 111 1345678877776555533
No 40
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.14 E-value=1.6e-10 Score=110.13 Aligned_cols=113 Identities=17% Similarity=0.209 Sum_probs=90.3
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhc---CCEEE
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASK---ADVVV 230 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~---aDiV~ 230 (346)
+|||||+|.||+.+|+.+...|++|++||++..+.. ....... ...+.++++++ +|+|+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~-----------------~~~~~g~~~~~s~~~~~~~~~~advVi 64 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVD-----------------VAGKLGITARHSLEELVSKLEAPRTIW 64 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH-----------------HHHHCCCeecCCHHHHHHhCCCCCEEE
Confidence 699999999999999999999999999998754311 1111111 23578888876 69999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
+++|..+.++.++ .+.+..+++|.++||+|+....+..++.+.+++..+. .+|.
T Consensus 65 ~~vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda 118 (299)
T PRK12490 65 VMVPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC 118 (299)
T ss_pred EEecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence 9999877888877 3567779999999999999999999999999887764 4774
No 41
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.09 E-value=2.7e-10 Score=112.48 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=82.5
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a 226 (346)
+..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.+.. .+...+ ...++++.+..+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~------------------~A~~~G~~~~~~~e~v~~a 258 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL------------------QAAMEGYEVMTMEEAVKEG 258 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH------------------HHHhcCCEEccHHHHHcCC
Confidence 3467999999999999999999999999999999998754421 111112 224567888999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH 273 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~ 273 (346)
|+|+.+. .+.++++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus 259 DVVI~at----G~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 259 DIFVTTT----GNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred CEEEECC----CCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 9999864 3556888888999999999999999876 77777664
No 42
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.04 E-value=7.5e-10 Score=105.53 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=90.0
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhc---CCEEE
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASK---ADVVV 230 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~---aDiV~ 230 (346)
+|||||+|.||+.+|+.|...|.+|.+||++..... .+..... ...+.+++++. +|+|+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~-----------------~~~~~g~~~~~~~~e~~~~~~~~dvvi 64 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVE-----------------ALAEEGATGADSLEELVAKLPAPRVVW 64 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHH-----------------HHHHCCCeecCCHHHHHhhcCCCCEEE
Confidence 799999999999999999999999999999764321 1111111 23578888875 69999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
+++|..+.++.++ ...+..+++|.++||++++.......+.+.+++..+. .+|.
T Consensus 65 ~~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 65 LMVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred EEecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 9999876777776 3567789999999999999999999999999988775 4675
No 43
>PLN02256 arogenate dehydrogenase
Probab=98.98 E-value=4.3e-09 Score=100.44 Aligned_cols=135 Identities=24% Similarity=0.267 Sum_probs=89.2
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh-hcCC
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKAD 227 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~aD 227 (346)
-.++++||||+|.||+.+|+.++..|++|+++|++.... .....+ ...++++++ .++|
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~-------------------~a~~~gv~~~~~~~e~~~~~aD 94 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSD-------------------IAAELGVSFFRDPDDFCEEHPD 94 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHH-------------------HHHHcCCeeeCCHHHHhhCCCC
Confidence 366799999999999999999999999999999874210 000111 235677776 4799
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC---CCCCCCCCc
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP---NDPILKFKN 304 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~---~~pL~~~~n 304 (346)
+|++++|. ..+..++.+-....+++++++++++.+.-+..+++.+.+..+. .+...-|... ....+.-.+
T Consensus 95 vVilavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~ 167 (304)
T PLN02256 95 VVLLCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLP 167 (304)
T ss_pred EEEEecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCe
Confidence 99999995 4666666543355689999999999865455555555554321 1222234311 123455566
Q ss_pred eEEccCC
Q 019081 305 VLITPHV 311 (346)
Q Consensus 305 viiTPH~ 311 (346)
++++|+.
T Consensus 168 ~~~~~~~ 174 (304)
T PLN02256 168 FVYDKVR 174 (304)
T ss_pred EEEecce
Confidence 7777753
No 44
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.96 E-value=1.2e-09 Score=110.28 Aligned_cols=128 Identities=16% Similarity=0.098 Sum_probs=96.3
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc---CCEEEE
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVVC 231 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~~ 231 (346)
+||+||+|.||+.+|++|..-|++|.+|||+..+....... . . ...........+++|+.+. +|+|++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~---~--~----~~Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---A--K----KEGNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHh---h--h----hcCCcccccCCCHHHHHhcCCCCCEEEE
Confidence 69999999999999999999999999999986542110000 0 0 0000000124578888875 999999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCC
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 292 (346)
++|..+.++.++ ...+..+++|.++||+|....-+...+.+.+++..+.....=|.-.++
T Consensus 79 ~v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 79 LVKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred ECCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 999998888888 467888999999999999999999999999999888644443554443
No 45
>PLN02712 arogenate dehydrogenase
Probab=98.94 E-value=1.1e-09 Score=114.76 Aligned_cols=110 Identities=22% Similarity=0.284 Sum_probs=83.0
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh-
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS- 224 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~- 224 (346)
+.++.+++|||||+|.||+.+|+.++.+|++|++||++.... . ....+ ...++++++.
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~--~-----------------a~~~Gv~~~~~~~el~~~ 424 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSD--E-----------------AQKLGVSYFSDADDLCEE 424 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHH--H-----------------HHHcCCeEeCCHHHHHhc
Confidence 467889999999999999999999999999999999863210 0 00111 2357888776
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
.||+|++|+|. ..+..++.+-....||+|+++++++.+.-...+.+.+.+..
T Consensus 425 ~aDvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 425 HPEVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred CCCEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 59999999994 67788877655557999999999998874445555555444
No 46
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.92 E-value=7.8e-09 Score=101.33 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=74.7
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV 228 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi 228 (346)
.+.+++|.|+|+|.+|+.+++.++.+|++|.++|++..+....... + ..... ......++.+.++++|+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~---~-------g~~v~~~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE---F-------GGRIHTRYSNAYEIEDAVKRADL 233 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh---c-------CceeEeccCCHHHHHHHHccCCE
Confidence 3677889999999999999999999999999999875431100000 0 00000 00122457788899999
Q ss_pred EEEeecCC-ccccCCCCHHHHccCCCCcEEEEcC
Q 019081 229 VVCCLSLN-KQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 229 V~~~lPlt-~~T~~li~~~~l~~mk~gailIN~s 261 (346)
|+.+++.+ ..+..+++++.++.||+++++||+|
T Consensus 234 VI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 234 LIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 99998653 3456789999999999999999997
No 47
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.89 E-value=3.9e-09 Score=100.24 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=88.0
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEee
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~l 233 (346)
+|||||+|+||..+|+.|...|++|.+||++.... .+..... ...+..++.++||+|++++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~------------------~~~~~g~~~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVAD------------------ELLSLGAVSVETARQVTEASDIIFIMV 63 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHH------------------HHHHcCCeecCCHHHHHhcCCEEEEeC
Confidence 69999999999999999999999999999864210 1111111 2357888899999999999
Q ss_pred cCCccccCCCCH--HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 234 SLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 234 Plt~~T~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
|..+..+.++.. ..+..+++|.++|++|....-....+.+.+++..+. .+|.
T Consensus 64 ~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 64 PDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred CChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 987776666532 356678999999999999998889999998887554 5665
No 48
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.86 E-value=5.7e-09 Score=99.37 Aligned_cols=112 Identities=13% Similarity=0.236 Sum_probs=85.8
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHH---hhcCCEEE
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF---ASKADVVV 230 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el---l~~aDiV~ 230 (346)
+|||||+|.||..+|+.+...|++|.+|||+..+.. .+..... ...+++++ +.++|+|+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~-----------------~l~~~g~~~~~s~~~~~~~~~~~dvIi 64 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVK-----------------AMKEDRTTGVANLRELSQRLSAPRVVW 64 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHH-----------------HHHHcCCcccCCHHHHHhhcCCCCEEE
Confidence 799999999999999999999999999999764321 1111111 12345454 45689999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
+++|.. .++.++ .+....+++|.++||++.+...+...+.+.+++..+. .+|.
T Consensus 65 ~~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 65 VMVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred EEcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 999976 777777 4566778999999999999989999999999887664 4554
No 49
>PLN02858 fructose-bisphosphate aldolase
Probab=98.85 E-value=6e-09 Score=116.60 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=95.6
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEE
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV 230 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~ 230 (346)
+.++||+||+|.||..+|++|...|++|.+|||+..+.. .+..... ...+..++.++||+|+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~-----------------~l~~~Ga~~~~s~~e~a~~advVi 65 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLME-----------------KFCELGGHRCDSPAEAAKDAAALV 65 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEE
Confidence 457899999999999999999999999999999765421 1111111 3468999999999999
Q ss_pred EeecCCccccCCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 231 CCLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 231 ~~lPlt~~T~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
+|+|..+.++.++ ....+..+++|.++|++|....-....+.+.+.+..-....+|.
T Consensus 66 ~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 66 VVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred EEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 9999888888876 34577889999999999999999999999999876521236776
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=98.84 E-value=5.3e-09 Score=117.02 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=93.2
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC 231 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~ 231 (346)
.++|||||+|.||..+|++|...|++|++||++..+.. .+..... ...+..+++++||+|++
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~Ga~~~~s~~e~~~~aDvVi~ 386 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLV-----------------RFENAGGLAGNSPAEVAKDVDVLVI 386 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEEE
Confidence 47899999999999999999999999999998764321 1111111 24688899999999999
Q ss_pred eecCCccccCCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh--CCCeEEEEec
Q 019081 232 CLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC--GHLGGLGIDV 287 (346)
Q Consensus 232 ~lPlt~~T~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~--g~i~ga~lDV 287 (346)
|+|....++.++ +...+..+++|.++||+|....-..+.+.+.+.+ ..+. .+|.
T Consensus 387 ~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA 444 (1378)
T PLN02858 387 MVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA 444 (1378)
T ss_pred ecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence 999888888887 3457888999999999999998888999999887 3333 5665
No 51
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.82 E-value=1.3e-08 Score=101.19 Aligned_cols=149 Identities=20% Similarity=0.253 Sum_probs=93.4
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH-----------
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----------- 222 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----------- 222 (346)
++|+|||+|.||..+|..|+..|++|++||++......- ..+.+. .....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l---------~~g~~~------~~e~~l~~~l~~~~~~g~l~ 68 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI---------NRGEIH------IVEPDLDMVVKTAVEGGYLR 68 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH---------HCCCCC------cCCCCHHHHHHHHhhcCcee
Confidence 689999999999999999999999999999876532110 000000 001223333
Q ss_pred ----hhcCCEEEEeecCCc------cccCCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe-------EE
Q 019081 223 ----ASKADVVVCCLSLNK------QTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG-------GL 283 (346)
Q Consensus 223 ----l~~aDiV~~~lPlt~------~T~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~-------ga 283 (346)
++.||+|++|+|... +...+. -+.....+++|+++|+.|.-.+-..+.+...|.+.... |.
T Consensus 69 ~~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~ 148 (415)
T PRK11064 69 ATTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGE 148 (415)
T ss_pred eecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccC
Confidence 347999999999531 222222 13456678999999999999988888888877764221 11
Q ss_pred EEe---cCCCCCCCCCCCC---CCCCceEEccCCCCCcHHHHHHH
Q 019081 284 GID---VAWTEPFDPNDPI---LKFKNVLITPHVGGVTEHSYRSM 322 (346)
Q Consensus 284 ~lD---V~~~EPl~~~~pL---~~~~nviiTPH~a~~t~~~~~~~ 322 (346)
+.| ++.+|-+.+...+ ...+.++ ||.++++.+++
T Consensus 149 ~~~f~v~~~PE~~~~G~~~~~~~~~~~vv-----gG~~~~~~~~~ 188 (415)
T PRK11064 149 QADINIAYCPERVLPGQVMVELIKNDRVI-----GGMTPVCSARA 188 (415)
T ss_pred CCCeEEEECCCccCCCChhhhhcCCCEEE-----EeCCHHHHHHH
Confidence 233 4566656554433 3334432 45555555444
No 52
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.82 E-value=6.9e-09 Score=104.49 Aligned_cols=121 Identities=16% Similarity=0.219 Sum_probs=92.7
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh---cCCEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KADVVV 230 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~ 230 (346)
.+|||||+|.||..+|+.|...|++|.+|||+.......... . . .... ......+++++++ ++|+|+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~----~-~----~~g~-~i~~~~s~~e~v~~l~~~d~Ii 71 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKK----A-K----EGNT-RVKGYHTLEELVNSLKKPRKVI 71 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh----h-h----hcCC-cceecCCHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999976542110000 0 0 0000 0012468888886 589999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
+++|....++.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+. .+|+
T Consensus 72 l~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda 125 (470)
T PTZ00142 72 LLIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM 125 (470)
T ss_pred EEeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence 9999888888888 4567789999999999999999999999999998886 4553
No 53
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.80 E-value=9.2e-09 Score=95.87 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=95.5
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV 228 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 228 (346)
.-+.+++|+||+|.+|..++..|...|++|++|||+.... +++.+... ...+..|+.+.||+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~-----------------~~f~~~Ga~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKC-----------------KEFQEAGARVANSPAEVAEDSDV 94 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHH-----------------HHHHHhchhhhCCHHHHHhhcCE
Confidence 3467899999999999999999999999999999976542 12222222 35788999999999
Q ss_pred EEEeecCCccccCCCCH--HHHccCCCCcEE-EEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 229 VVCCLSLNKQTAGIVNK--SFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~--~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
|+.++|.....+.++.. ..|+..++|... |+.|.-..--...|.+++...... .+|-
T Consensus 95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 99999988888877643 467778888777 899998888888999999988654 4564
No 54
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.78 E-value=1e-08 Score=97.16 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=84.5
Q ss_pred EEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCC
Q 019081 158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLN 236 (346)
Q Consensus 158 IiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt 236 (346)
|||+|.||..+|+.|...|++|.+|||+..+.. .+..... ...++.+++++||+|++++|..
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~g~~~~~s~~~~~~~advVil~vp~~ 63 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVE-----------------EAVAAGAQAAASPAEAAEGADRVITMLPAG 63 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEEEeCCCh
Confidence 689999999999999999999999998754311 1111111 2357889999999999999976
Q ss_pred ccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 237 KQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 237 ~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
..++.++. ...+..+++|.++||++....-..+.+.+.+++..+. .+|.
T Consensus 64 ~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 64 QHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred HHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 77676663 4556678999999999977766778888888776554 4664
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.78 E-value=2.5e-08 Score=99.82 Aligned_cols=133 Identities=28% Similarity=0.434 Sum_probs=89.5
Q ss_pred CeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEE
Q 019081 154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV 230 (346)
Q Consensus 154 ~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~ 230 (346)
.+++||| +|.||+.+|+.++..|++|.+++++..... ......+ ...+..+.+++||+|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~-----------------~~a~~~gv~~~~~~~e~~~~aDvVI 63 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGK-----------------EVAKELGVEYANDNIDAAKDADIVI 63 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHH-----------------HHHHHcCCeeccCHHHHhccCCEEE
Confidence 3799998 899999999999999999999998653310 0111111 1346778899999999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCC-CCCCCCCCCceEEcc
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-PNDPILKFKNVLITP 309 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-~~~pL~~~~nviiTP 309 (346)
+++|. ..+..++ .+....+++++++++++.......+++.+.+..+ ..+...-|+. +..+++.-..+++||
T Consensus 64 lavp~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~------~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 64 ISVPI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEG------VEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred EecCH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCC------CEEEEcCCCCCCCCcccCCCEEEEec
Confidence 99996 3455555 4455678999999999875544444555444322 1222223431 234567778899999
Q ss_pred CC
Q 019081 310 HV 311 (346)
Q Consensus 310 H~ 311 (346)
+-
T Consensus 136 ~~ 137 (437)
T PRK08655 136 TE 137 (437)
T ss_pred CC
Confidence 75
No 56
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.78 E-value=7.8e-08 Score=94.47 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=64.7
Q ss_pred CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
..++|+||| +|.||+.+|+.++..|..|.+||++.. .+.++++++||+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------------------------~~~~~~~~~aDlVi 147 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------------------------DRAEDILADAGMVI 147 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------------------------hhHHHHHhcCCEEE
Confidence 458999999 999999999999999999999997421 24567788999999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
+|+|.. .+..++. + +..+++|+++++++.-.
T Consensus 148 lavP~~-~~~~~~~-~-l~~l~~~~iv~Dv~SvK 178 (374)
T PRK11199 148 VSVPIH-LTEEVIA-R-LPPLPEDCILVDLTSVK 178 (374)
T ss_pred EeCcHH-HHHHHHH-H-HhCCCCCcEEEECCCcc
Confidence 999965 3455552 3 44489999999996643
No 57
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.77 E-value=3.4e-08 Score=93.78 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=90.9
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-c--chhhhccccccc-cc-ccc--CCc-CCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-S--SALAVKNGIIDD-LV-DEK--GCH-EDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~--~~~~~~~~~~~~-~~-~~~--~~~-~~l~ell~~ 225 (346)
++|||||+|.||..+|+.+...|++|++||++.......... . ....+..+.+.. .. ... ... .+. +.++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 589999999999999999999999999999876432100000 0 000000000000 00 000 112 234 56899
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHh-CCCeEEEEecCCCCCCCCCCCCCCCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLEC-GHLGGLGIDVAWTEPFDPNDPILKFK 303 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EPl~~~~pL~~~~ 303 (346)
||+|+.++|..++.+..+-++..+.++++++|+ |+|.-. ...+.+.+.. .++.| +-.+ .|+ +..+
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~~~r~~g--~h~~--~pp------~~~~ 150 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQRPQQVIG--MHFM--NPP------PIMK 150 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCCCcceEE--Eecc--CCc------ccCc
Confidence 999999999888888877777777799999887 776654 4456666543 34433 3222 221 2234
Q ss_pred ceEEccCCCCCcHHHHHH
Q 019081 304 NVLITPHVGGVTEHSYRS 321 (346)
Q Consensus 304 nviiTPH~a~~t~~~~~~ 321 (346)
-+.+.|+-.+ +++..++
T Consensus 151 lveiv~g~~t-~~e~~~~ 167 (295)
T PLN02545 151 LVEIIRGADT-SDEVFDA 167 (295)
T ss_pred eEEEeCCCCC-CHHHHHH
Confidence 4777777332 3444433
No 58
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.77 E-value=1.9e-08 Score=95.71 Aligned_cols=111 Identities=24% Similarity=0.369 Sum_probs=86.3
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
-++||++.|.|||-+|+-+|.+++++|++|++.+..+....+. ..+ ......+++....+||+
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA----------------~Md-Gf~V~~m~~Aa~~gDif 268 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA----------------AMD-GFRVMTMEEAAKTGDIF 268 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH----------------hhc-CcEEEEhHHhhhcCCEE
Confidence 5799999999999999999999999999999987655432110 001 11346789999999999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHH-HHhCCCe
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHY-LECGHLG 281 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~a-L~~g~i~ 281 (346)
+.+ ..++++|..+.|..||+|+++-|.+.-.+ ||.+.|-+- ++...+.
T Consensus 269 iT~----TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr 318 (420)
T COG0499 269 VTA----TGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR 318 (420)
T ss_pred EEc----cCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence 985 45778999999999999999999998776 677666543 4444454
No 59
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.76 E-value=6.5e-09 Score=102.49 Aligned_cols=96 Identities=25% Similarity=0.258 Sum_probs=70.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC------CccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS------WASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (346)
..|.||||+|||+|.+|++-|..++..|++|++--|. ..+.. ..........+++|+
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~-----------------kA~~dGF~v~~~~Ea 94 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWR-----------------KATENGFKVGTYEEL 94 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHH-----------------HHHhcCCccCCHHHH
Confidence 5799999999999999998888888888887732221 11100 000011134689999
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
+++||+|++.+|.+ . .+.+..+.+..||+|++|. .|.|=
T Consensus 95 ~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF 133 (487)
T PRK05225 95 IPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF 133 (487)
T ss_pred HHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence 99999999999988 3 7788899999999999774 34443
No 60
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.76 E-value=1.2e-08 Score=97.77 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=68.0
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEE
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV 229 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV 229 (346)
|+||+|||||+|+||+++|+.|+.+|++|++++++...... ... ..+ ...+..+++++||+|
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~----------------~a~-~~Gv~~~s~~ea~~~ADiV 63 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWK----------------KAT-EDGFKVGTVEEAIPQADLI 63 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHH----------------HHH-HCCCEECCHHHHHhcCCEE
Confidence 57899999999999999999999999998776554321100 000 111 224688889999999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 265 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~ 265 (346)
++++|.... ...+.++....|+++. +|.++-|=-
T Consensus 64 vLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 64 MNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred EEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCcc
Confidence 999995433 3344455667788886 788877754
No 61
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.76 E-value=3.2e-08 Score=98.68 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=92.5
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC 232 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~ 232 (346)
.+|||||+|.||..+|..++. |++|++||++..+...-... ..+..+..+.++..... ...+..+.+++||++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G--~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNG--VDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCc--CCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 589999999999999999877 79999999976542110000 00000000011101001 122334568999999999
Q ss_pred ecCCc------cccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh---CCCeE-EEEecCCCCCCCCCC---
Q 019081 233 LSLNK------QTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC---GHLGG-LGIDVAWTEPFDPND--- 297 (346)
Q Consensus 233 lPlt~------~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~---g~i~g-a~lDV~~~EPl~~~~--- 297 (346)
+|... +...++. +...+.+++|.++|+.|.-.+-..+.++..+.+ |.-.+ ...=+|.+||+.+..
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~ 163 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKH 163 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccc
Confidence 99542 2234442 345677899999999999999888877665443 22211 111146789987764
Q ss_pred CCCCCCceEE
Q 019081 298 PILKFKNVLI 307 (346)
Q Consensus 298 pL~~~~nvii 307 (346)
.+.+.|.++.
T Consensus 164 ~~~~~~riv~ 173 (425)
T PRK15182 164 RLTNIKKITS 173 (425)
T ss_pred cccCCCeEEE
Confidence 4555566644
No 62
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.75 E-value=1.8e-08 Score=96.31 Aligned_cols=85 Identities=22% Similarity=0.252 Sum_probs=68.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~ 231 (346)
.+++|||||+|.+|+++|+.|...|++|.+|+|+.. .++++++++||+|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------------------------~~~~~~~~~advvi~ 53 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------------------------LSLAAVLADADVIVS 53 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------------------------CCHHHHHhcCCEEEE
Confidence 356899999999999999999999999999998532 257788899999999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL 266 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v 266 (346)
++|. +..+.+++.-.-..+++++++|++++|-..
T Consensus 54 ~vp~-~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 54 AVSM-KGVRPVAEQVQALNLPPETIIVTATKGLDP 87 (308)
T ss_pred ECCh-HHHHHHHHHHHHhcCCCCcEEEEeCCcccC
Confidence 9996 567777633211147899999999885443
No 63
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.73 E-value=1.7e-08 Score=101.56 Aligned_cols=117 Identities=13% Similarity=0.195 Sum_probs=88.3
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc-cc-cCCcCCHHHHh---hcCCEE
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DE-KGCHEDIFEFA---SKADVV 229 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~ell---~~aDiV 229 (346)
.|||||+|.||+.+|+++...|++|.+|||+..+..... .... .. .....+++++. +++|+|
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~-------------~~~~~g~~~~~~~s~~e~v~~l~~~dvI 67 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL-------------AEHAKGKKIVGAYSIEEFVQSLERPRKI 67 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH-------------hhccCCCCceecCCHHHHHhhcCCCCEE
Confidence 389999999999999999999999999999765421100 0000 00 01234566665 468999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
++++|..+.++.++ .+.+..+++|.++||++....-+...+.+.+.+..+. .+|+
T Consensus 68 il~v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 68 MLMVKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred EEECCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 99999877787777 4566778999999999999989999999999887775 4554
No 64
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.69 E-value=1.6e-07 Score=84.47 Aligned_cols=111 Identities=25% Similarity=0.310 Sum_probs=81.1
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhh-c
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-K 225 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~ 225 (346)
+.+++||+++|+|+|+||+.+|+.|..+|++|+++|++..... ......+ ...+.++++. +
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~-----------------~~~~~~g~~~v~~~~l~~~~ 85 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVA-----------------RAAELFGATVVAPEEIYSVD 85 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH-----------------HHHHHcCCEEEcchhhcccc
Confidence 4679999999999999999999999999999999998653210 0111111 1223455554 7
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG 282 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g 282 (346)
||+++.+.. .++|+++.++.|+ .-+++.-+-+.+-+ ..-.+.|++..|..
T Consensus 86 ~Dv~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~ 135 (200)
T cd01075 86 ADVFAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILY 135 (200)
T ss_pred CCEEEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEE
Confidence 999986654 3589999999998 45788888888766 55667788777753
No 65
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.67 E-value=8.1e-08 Score=91.76 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=86.1
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
.++|+|||+|.||..+|+.++..|. +|++||++........ .. .... ....++++.+++||+|+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~--------~~----g~~~--~~~~~~~~~~~~aDvVi 71 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR--------EL----GLGD--RVTTSAAEAVKGADLVI 71 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH--------hC----CCCc--eecCCHHHHhcCCCEEE
Confidence 4689999999999999999988785 8999998754311000 00 0000 01246778889999999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE-EEEecC---CCC---CCCCCCCCCCCC
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG-LGIDVA---WTE---PFDPNDPILKFK 303 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g-a~lDV~---~~E---Pl~~~~pL~~~~ 303 (346)
+++|.. .+..++ ++....++++.++++++... ..+++++....-.+ -.+... ..| |-....+|+.-.
T Consensus 72 iavp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k----~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~ 145 (307)
T PRK07502 72 LCVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVK----ASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENR 145 (307)
T ss_pred ECCCHH-HHHHHH-HHHHhhCCCCCEEEeCccch----HHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCC
Confidence 999963 333332 34446689999999986543 23333333221111 123322 111 111112555567
Q ss_pred ceEEccCCCCCcHHHHH
Q 019081 304 NVLITPHVGGVTEHSYR 320 (346)
Q Consensus 304 nviiTPH~a~~t~~~~~ 320 (346)
++++||+-++ +.+..+
T Consensus 146 ~~~l~~~~~~-~~~~~~ 161 (307)
T PRK07502 146 WCILTPPEGT-DPAAVA 161 (307)
T ss_pred eEEEeCCCCC-CHHHHH
Confidence 7899997544 344433
No 66
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.66 E-value=3e-07 Score=89.88 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=82.4
Q ss_pred CCCeEEEEec-CHHHHHHHHHHcc-CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 152 LGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 152 ~g~tvgIiG~-G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
.-.||+|||+ |.||+.+|+.++. +|.+|++||+... ...++++.+++||+|
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------------------------~~~~~~~~v~~aDlV 55 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------------------------GSLDPATLLQRADVL 55 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------------------------ccCCHHHHhcCCCEE
Confidence 4579999999 9999999999985 5999999997421 113567889999999
Q ss_pred EEeecCCccccCCCCHH--HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCC--CCCCCCCCCCce
Q 019081 230 VCCLSLNKQTAGIVNKS--FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF--DPNDPILKFKNV 305 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~--~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl--~~~~pL~~~~nv 305 (346)
++|+|.. .+..++.+- ....+|+|+++++++.-. ...++++..... ++...-|+ |..+.++.--++
T Consensus 56 ilavPv~-~~~~~l~~l~~~~~~l~~~~iVtDVgSvK----~~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~ 125 (370)
T PRK08818 56 IFSAPIR-HTAALIEEYVALAGGRAAGQLWLDVTSIK----QAPVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVM 125 (370)
T ss_pred EEeCCHH-HHHHHHHHHhhhhcCCCCCeEEEECCCCc----HHHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeE
Confidence 9999953 444444321 112479999999997644 223333322211 23333454 223466666788
Q ss_pred EEccC
Q 019081 306 LITPH 310 (346)
Q Consensus 306 iiTPH 310 (346)
++||.
T Consensus 126 iltp~ 130 (370)
T PRK08818 126 VVCEA 130 (370)
T ss_pred EEeCC
Confidence 99986
No 67
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.65 E-value=4.2e-07 Score=85.55 Aligned_cols=119 Identities=24% Similarity=0.369 Sum_probs=86.5
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||.|.+ |+.+|.+|...|+.|++.... ..++.+.+++|
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~------------------------------t~~l~~~~~~A 202 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK------------------------------TRDLAAHTRQA 202 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC------------------------------CCCHHHHhhhC
Confidence 46899999999999999 999999999999999986532 13678899999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|++++| +.++++.+. +|+|+++||+|--.+. +|++.| ||-..+- ..---.
T Consensus 203 DIVV~avG----~~~~i~~~~---ik~gavVIDVGin~~~----------~gkl~G---DVd~~~v--------~~~a~~ 254 (285)
T PRK14189 203 DIVVAAVG----KRNVLTADM---VKPGATVIDVGMNRDD----------AGKLCG---DVDFAGV--------KEVAGY 254 (285)
T ss_pred CEEEEcCC----CcCccCHHH---cCCCCEEEEccccccC----------CCCeeC---CccHHHH--------HhhceE
Confidence 99999998 456898855 7999999999865532 255544 5531110 111246
Q ss_pred EccCCCCCcHHHHHHHHH
Q 019081 307 ITPHVGGVTEHSYRSMAK 324 (346)
Q Consensus 307 iTPH~a~~t~~~~~~~~~ 324 (346)
+||--||.-+-+...+.+
T Consensus 255 iTPVPGGVGp~T~a~Ll~ 272 (285)
T PRK14189 255 ITPVPGGVGPMTITMLLV 272 (285)
T ss_pred ecCCCCCchHHHHHHHHH
Confidence 899777765544433333
No 68
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.64 E-value=9e-08 Score=90.25 Aligned_cols=133 Identities=19% Similarity=0.287 Sum_probs=81.0
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP 234 (346)
+|||||+|.||+.+|..|+..|++|++||++......... . ..... ...+. +.+++||+|++++|
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~--------~----g~~~~--~~~~~-~~~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE--------R----GLVDE--ASTDL-SLLKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------C----CCccc--ccCCH-hHhcCCCEEEEcCC
Confidence 7999999999999999999899999999986543110000 0 00000 11233 46789999999999
Q ss_pred CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC---------CCCCCCCCce
Q 019081 235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP---------NDPILKFKNV 305 (346)
Q Consensus 235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~---------~~pL~~~~nv 305 (346)
.. .+..++ ++....+++++++++++.-.. ..++++....-. .+.. -|+.- ..-|+.-.++
T Consensus 67 ~~-~~~~~~-~~l~~~l~~~~ii~d~~Svk~----~~~~~~~~~~~~--~v~~---HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 67 IG-LLLPPS-EQLIPALPPEAIVTDVGSVKA----PIVEAWEKLHPR--FVGS---HPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred HH-HHHHHH-HHHHHhCCCCcEEEeCcchHH----HHHHHHHHhhCC--ceee---CCcCCCCcchHHHhhHHHhCCCcE
Confidence 53 333333 455566889999999876442 234444332111 1221 13211 1125666788
Q ss_pred EEccCCCC
Q 019081 306 LITPHVGG 313 (346)
Q Consensus 306 iiTPH~a~ 313 (346)
++||+-..
T Consensus 136 ~l~p~~~~ 143 (279)
T PRK07417 136 VLTPTENT 143 (279)
T ss_pred EEccCCCC
Confidence 99997553
No 69
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.63 E-value=1.5e-07 Score=89.13 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=87.3
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccccc---chhhhcccccccc-----ccccCCcCCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS---SALAVKNGIIDDL-----VDEKGCHEDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~l~ell~~ 225 (346)
++|+|||+|.||..+|..+...|++|++||++..........- ....++.+.+... ........++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5899999999999999999989999999998764321100000 0000000000000 0000013578889999
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEE-EEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n 304 (346)
||+|+.++|...+.+..+-.+..+.++++++| +|+|.-.+ ..+.+.++. .-.-.++..| -|. +..+=
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv------~~~~L 149 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPV------HKMKL 149 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCc------ccCce
Confidence 99999999976655554444555678999877 78887554 456665532 2223456666 343 22344
Q ss_pred eEEccC
Q 019081 305 VLITPH 310 (346)
Q Consensus 305 viiTPH 310 (346)
+.+.|+
T Consensus 150 ve~v~g 155 (288)
T PRK09260 150 VELIRG 155 (288)
T ss_pred EEEeCC
Confidence 566665
No 70
>PLN02712 arogenate dehydrogenase
Probab=98.62 E-value=3.5e-08 Score=103.45 Aligned_cols=95 Identities=27% Similarity=0.382 Sum_probs=70.9
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh-hcC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKA 226 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~a 226 (346)
.-+.++|||||+|.||+.+|+.++.+|++|++||++.... .....+ ...++++++ .+|
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~-------------------~A~~~Gv~~~~d~~e~~~~~a 109 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSL-------------------AARSLGVSFFLDPHDLCERHP 109 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH-------------------HHHHcCCEEeCCHHHHhhcCC
Confidence 3455689999999999999999999999999999863221 001111 235677765 569
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|+|++|+|. ..+..++..-.+..||+|++|+|++.-.
T Consensus 110 DvViLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 110 DVILLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK 146 (667)
T ss_pred CEEEEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence 999999995 5677777665456799999999996433
No 71
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.60 E-value=2.4e-08 Score=85.75 Aligned_cols=90 Identities=29% Similarity=0.389 Sum_probs=60.9
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEE
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV 229 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV 229 (346)
|.+|+|+|||||.-|++.|..|+..|++|++-.+...+.. ..+.+.+ ...+..|+.++||+|
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~-----------------~~A~~~Gf~v~~~~eAv~~aDvV 64 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASW-----------------EKAKADGFEVMSVAEAVKKADVV 64 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHH-----------------HHHHHTT-ECCEHHHHHHC-SEE
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCH-----------------HHHHHCCCeeccHHHHHhhCCEE
Confidence 6799999999999999999999999999998776544210 1111112 346899999999999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEE
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLV 258 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailI 258 (346)
.+.+|.. .-..+..++....||+|+.|+
T Consensus 65 ~~L~PD~-~q~~vy~~~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 65 MLLLPDE-VQPEVYEEEIAPNLKPGATLV 92 (165)
T ss_dssp EE-S-HH-HHHHHHHHHHHHHS-TT-EEE
T ss_pred EEeCChH-HHHHHHHHHHHhhCCCCCEEE
Confidence 9999943 334455667777899999765
No 72
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.59 E-value=3.3e-07 Score=88.05 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=84.3
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhcccccccc-ccccCCcCCHHHHhhcCCEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIIDDL-VDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV 229 (346)
++|||||.|.||..+|..+...|++|+.||+++......... ...+ -++.+..... ........++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 689999999999999999999999999999876432110000 0000 0000000000 00111235888999999999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeE
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGG 282 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~g 282 (346)
+-++|.+.+.+.-+-++..+.+++++ +|.++..+ +.-.++.++++. .++.|
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~~g 139 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERCVV 139 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccEEE
Confidence 99999999988888888888899999 44554443 466777777754 34433
No 73
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.59 E-value=2.7e-07 Score=78.71 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=78.2
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccc--cCCcCCHHHHhhcC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKA 226 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~a 226 (346)
.+.+++++|+|+|.||+.+++.+...| .+|.++|++..+..... ...... .....+..++++++
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 82 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALA-------------ERFGELGIAIAYLDLEELLAEA 82 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH-------------HHHhhcccceeecchhhccccC
Confidence 467899999999999999999999886 78999998754321100 000000 01234677778999
Q ss_pred CEEEEeecCCcc-ccC-CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081 227 DVVVCCLSLNKQ-TAG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 280 (346)
Q Consensus 227 DiV~~~lPlt~~-T~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i 280 (346)
|+|++++|.... ... .+... .++++.+++|++..+... .|.+.+++..+
T Consensus 83 Dvvi~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 83 DLIINTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALGA 133 (155)
T ss_pred CEEEeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence 999999997653 222 23332 368999999998765443 88888887644
No 74
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.59 E-value=1.7e-07 Score=88.83 Aligned_cols=129 Identities=22% Similarity=0.291 Sum_probs=89.2
Q ss_pred ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||+++|||.| .+|+.+|.+|..-|+.|++++++. .++.++.++|
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t------------------------------~~l~e~~~~A 203 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS------------------------------TDAKALCRQA 203 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC------------------------------CCHHHHHhcC
Confidence 468999999999996 999999999999999999997632 2577889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC--CCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG--HLGGLGIDVAWTEPFDPNDPILKFKN 304 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g--~i~ga~lDV~~~EPl~~~~pL~~~~n 304 (346)
|+|+++++.. +++.... +|+|+++||+|--.+.+ +| ++.| ||-..+- .-.-
T Consensus 204 DIVIsavg~~----~~v~~~~---ik~GaiVIDvgin~~~~---------~g~~kl~G---Dvdf~~~--------~~~a 256 (301)
T PRK14194 204 DIVVAAVGRP----RLIDADW---LKPGAVVIDVGINRIDD---------DGRSRLVG---DVDFDSA--------LPVV 256 (301)
T ss_pred CEEEEecCCh----hcccHhh---ccCCcEEEEecccccCC---------CCCcceec---ccchHHH--------Hhhc
Confidence 9999999854 3566655 79999999998654311 23 4443 5532110 0112
Q ss_pred eEEccCCCCCcHHHHHHHHHHHHHHHHHH
Q 019081 305 VLITPHVGGVTEHSYRSMAKVVGDVALQL 333 (346)
Q Consensus 305 viiTPH~a~~t~~~~~~~~~~~~~ni~~~ 333 (346)
-.+||-=||.-+-+...+.+..++..+++
T Consensus 257 ~~iTPVPGGVGp~Tva~L~~N~~~a~~~~ 285 (301)
T PRK14194 257 SAITPVPGGVGPMTIAFLMKNTVTAARLQ 285 (301)
T ss_pred ceecCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 45788777765544444444444443443
No 75
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.57 E-value=2.8e-07 Score=80.52 Aligned_cols=90 Identities=26% Similarity=0.414 Sum_probs=74.9
Q ss_pred cccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081 149 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (346)
.+|.|+++.|||.|.+ |..+|+.|...|++|.+.+|+. .++.+.+.+||
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l~~aD 89 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHTKQAD 89 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHHhhCC
Confidence 5799999999999986 8889999999999999988742 25678899999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG 282 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g 282 (346)
+|+++++.. ++|+++. ++++.++||+|...-+| ..+|++.|
T Consensus 90 iVIsat~~~----~ii~~~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 90 IVIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred EEEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 999998743 2788886 58899999999998888 45666655
No 76
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.57 E-value=4.4e-07 Score=90.25 Aligned_cols=150 Identities=17% Similarity=0.257 Sum_probs=89.5
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc---ccC---CcCCHHHHhhcCCE
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKG---CHEDIFEFASKADV 228 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~l~ell~~aDi 228 (346)
+|||||+|.+|..+|..+...|++|++||++......-... ..+.....+.+... ..+ ...++.+++++||+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g--~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~adv 79 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKG--KSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADV 79 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcC--CCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCE
Confidence 79999999999999999999999999999876432110000 00000000000000 001 23577888999999
Q ss_pred EEEeecCCccccC------CCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHH-Hh--CCCeEEEEec---CCCCCCC
Q 019081 229 VVCCLSLNKQTAG------IVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL-EC--GHLGGLGIDV---AWTEPFD 294 (346)
Q Consensus 229 V~~~lPlt~~T~~------li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL-~~--g~i~ga~lDV---~~~EPl~ 294 (346)
|++++|......+ +.. ......+++|.++|+.|.-.+-..+.+...+ ++ |.-. +.|+ +.+|...
T Consensus 80 vii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~--~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 80 IIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKL--GEDFYLAYNPEFLR 157 (411)
T ss_pred EEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCC--CCCceEEECCCcCC
Confidence 9999995432111 221 3345568999999999977666677776544 44 2211 3343 2455443
Q ss_pred CCC---CCCCCCceEEc
Q 019081 295 PND---PILKFKNVLIT 308 (346)
Q Consensus 295 ~~~---pL~~~~nviiT 308 (346)
+.. .++..+.+++.
T Consensus 158 ~G~~~~~~~~~~~iv~G 174 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGG 174 (411)
T ss_pred CCChhhhhcCCCEEEEe
Confidence 333 34556677776
No 77
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.55 E-value=2.8e-07 Score=90.05 Aligned_cols=98 Identities=21% Similarity=0.352 Sum_probs=67.4
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l 233 (346)
++|+|||+|.||.++|+.++..|++|.+|+++......... ... ...+. ...++++++++||+|++++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a------~~~----~~~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA------LGF----GVIDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH------hcC----CCCcc--cccCHHHHhcCCCEEEEeC
Confidence 47999999999999999999999998888876543110000 000 00000 1256788899999999999
Q ss_pred cCCccccCCCCHHHHc-cCCCCcEEEEcCCCCC
Q 019081 234 SLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGL 265 (346)
Q Consensus 234 Plt~~T~~li~~~~l~-~mk~gailIN~sRg~~ 265 (346)
|. ..+..++. +... .+++++++++++.-..
T Consensus 69 P~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~ 99 (359)
T PRK06545 69 PV-DATAALLA-ELADLELKPGVIVTDVGSVKG 99 (359)
T ss_pred CH-HHHHHHHH-HHhhcCCCCCcEEEeCccccH
Confidence 96 45666653 2222 4789999999976654
No 78
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.53 E-value=3.3e-08 Score=77.76 Aligned_cols=89 Identities=33% Similarity=0.480 Sum_probs=61.0
Q ss_pred eEEEEecCHHHHHHHHHHccCC---CEEE-EEcCCCccccccccccchhhhccccccccccccC--CcC-CHHHHhhcCC
Q 019081 155 TVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHE-DIFEFASKAD 227 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~ell~~aD 227 (346)
|+||||+|+||.++++.+...| .+|+ +++|++.+.. ++....+ ... +..+++++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAA-----------------ELAKEYGVQATADDNEEAAQEAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH-----------------HHHHHCTTEEESEEHHHHHHHTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH-----------------HHHHhhccccccCChHHhhccCC
Confidence 6899999999999999999999 8998 4588765421 1222222 123 7889999999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg 263 (346)
+|++++|.. ....++. +. ....++.++|++.-|
T Consensus 64 vvilav~p~-~~~~v~~-~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 64 VVILAVKPQ-QLPEVLS-EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp EEEE-S-GG-GHHHHHH-HH-HHHHTTSEEEEESTT
T ss_pred EEEEEECHH-HHHHHHH-HH-hhccCCCEEEEeCCC
Confidence 999999953 3333322 22 456789999988644
No 79
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.53 E-value=1.5e-07 Score=87.68 Aligned_cols=95 Identities=22% Similarity=0.324 Sum_probs=76.5
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
-+.||.+.|.|||.+|+..|+.|++||.+|++....+....+ .+-+......++|+.++.||+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQ-----------------AaMeG~~V~tm~ea~~e~dif 273 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQ-----------------AAMEGYEVTTLEEAIREVDIF 273 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHH-----------------HHhhccEeeeHHHhhhcCCEE
Confidence 368999999999999999999999999999997665432100 011111357899999999999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 265 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~ 265 (346)
+. |...+.+|..+.|.+||.++++.|++.-.+
T Consensus 274 VT----tTGc~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 274 VT----TTGCKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred EE----ccCCcchhhHHHHHhCcCCcEEeccccccc
Confidence 98 456778999999999999999999987664
No 80
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.50 E-value=8.3e-07 Score=84.00 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=91.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---cchhhhcccccc-c-----cccccCCcCCHHHHhh
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIID-D-----LVDEKGCHEDIFEFAS 224 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~~-~-----~~~~~~~~~~l~ell~ 224 (346)
++|+|||.|.+|..+|..+...|.+|+.||++.......... ......+...+. . .........++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 589999999999999999998899999999875431110000 000000000000 0 0000002357888899
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCC
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKF 302 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~ 302 (346)
.||+|+.++|...+.+.-+-++.-..++++++|+ |+|. +....+.+.++.. ++.| +-. -+|.+..
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt---~~~~~~~~~~~~~~r~vg--~Hf--------~~p~~~~ 150 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST---LLPSQFAEATGRPEKFLA--LHF--------ANEIWKN 150 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc---CCHHHHHhhcCCcccEEE--EcC--------CCCCCcC
Confidence 9999999999654444443345556678899884 4433 3456677766532 3333 322 2345667
Q ss_pred CceEEccCCCCCcHHHHHH
Q 019081 303 KNVLITPHVGGVTEHSYRS 321 (346)
Q Consensus 303 ~nviiTPH~a~~t~~~~~~ 321 (346)
+.+.+.|+-.. ++++..+
T Consensus 151 ~lvevv~~~~t-~~~~~~~ 168 (287)
T PRK08293 151 NTAEIMGHPGT-DPEVFDT 168 (287)
T ss_pred CeEEEeCCCCC-CHHHHHH
Confidence 88899987553 4444443
No 81
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.48 E-value=8.7e-07 Score=82.68 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=71.3
Q ss_pred eEEEEecCHHHHHHHHHHccCCC----EEEEE-cCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081 155 TVFILGFGNIGVELAKRLRPFGV----KIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD 227 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD 227 (346)
+|||||+|+||.++++.|..-|+ +|+++ ||+..+.. .+. ..+ ...+..+++++||
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~-----------------~~~-~~g~~~~~~~~e~~~~aD 63 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD-----------------VFQ-SLGVKTAASNTEVVKSSD 63 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH-----------------HHH-HcCCEEeCChHHHHhcCC
Confidence 79999999999999999988887 89998 77643310 011 111 2356778889999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
+|++++| ....+.++. +....++++.++|++.-| +..+.+.+.+.
T Consensus 64 vVil~v~-~~~~~~vl~-~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 64 VIILAVK-PQVVKDVLT-ELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred EEEEEEC-cHHHHHHHH-HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 9999997 445555553 344567889999988655 46667766554
No 82
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.48 E-value=1.1e-07 Score=80.16 Aligned_cols=103 Identities=23% Similarity=0.300 Sum_probs=72.3
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCccccccccccchhhhccccccccccc---cCCcCCHHHHhh
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE---KGCHEDIFEFAS 224 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ell~ 224 (346)
.+++++++.|+|.|.+|+.++..|...|++ |++++|+..+...-.. .+... .....++.+.+.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~-------------~~~~~~~~~~~~~~~~~~~~ 74 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE-------------EFGGVNIEAIPLEDLEEALQ 74 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH-------------HHTGCSEEEEEGGGHCHHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH-------------HcCccccceeeHHHHHHHHh
Confidence 478999999999999999999999999997 9999997654211000 01000 113456778899
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccCCCCc-EEEEcCCCCCCC
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNIARGGLLD 267 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~ga-ilIN~sRg~~vd 267 (346)
++|+|+.+.|.... .+.++.++..++.. ++++.|...-|+
T Consensus 75 ~~DivI~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 75 EADIVINATPSGMP---IITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp TESEEEE-SSTTST---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred hCCeEEEecCCCCc---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence 99999999886544 88889887766544 888887654444
No 83
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.47 E-value=9.2e-07 Score=83.38 Aligned_cols=149 Identities=20% Similarity=0.303 Sum_probs=87.1
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC-HHHHhhcCCEEEE
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED-IFEFASKADVVVC 231 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~~ 231 (346)
-++|+|+|+|.||+.+|+.++.-|+.|.++++........... . ....++ ...+ ..+.+..||+|++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~--~--------lgv~d~--~~~~~~~~~~~~aD~Viv 70 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL--E--------LGVIDE--LTVAGLAEAAAEADLVIV 70 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh--h--------cCcccc--cccchhhhhcccCCEEEE
Confidence 4689999999999999999999999875554433221000000 0 000110 0122 3577788999999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCC---CCCCCCCCCceEEc
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD---PNDPILKFKNVLIT 308 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~---~~~pL~~~~nviiT 308 (346)
++|- ..|..++. +....+|+|+++++++.-.---.+++.+.+..+. .+...-|+- ...+++..-.+++|
T Consensus 71 avPi-~~~~~~l~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vlt 142 (279)
T COG0287 71 AVPI-EATEEVLK-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLT 142 (279)
T ss_pred eccH-HHHHHHHH-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEc
Confidence 9995 45555543 2233799999999997655433444444432211 222234541 23467777789999
Q ss_pred cCCCCCcHHHHHHH
Q 019081 309 PHVGGVTEHSYRSM 322 (346)
Q Consensus 309 PH~a~~t~~~~~~~ 322 (346)
|.-... .+...++
T Consensus 143 p~~~~~-~~~~~~~ 155 (279)
T COG0287 143 PSEGTE-KEWVEEV 155 (279)
T ss_pred CCCCCC-HHHHHHH
Confidence 974433 4444443
No 84
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.47 E-value=9.8e-07 Score=82.98 Aligned_cols=100 Identities=19% Similarity=0.279 Sum_probs=65.7
Q ss_pred eEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081 155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
+|+|||+|.||+.+|+.++..|. +|++||++......... . ...+ ...+.+++. +||+|+++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~--------~----g~~~---~~~~~~~~~-~aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE--------L----GLVD---EIVSFEELK-KCDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH--------C----CCCc---ccCCHHHHh-cCCEEEEe
Confidence 79999999999999999987774 79999986543110000 0 0000 123566655 59999999
Q ss_pred ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
+|.. .+..++ .+... +++++++++++. ....+.+++..
T Consensus 66 vp~~-~~~~~~-~~l~~-l~~~~iv~d~gs----~k~~i~~~~~~ 103 (275)
T PRK08507 66 IPVD-AIIEIL-PKLLD-IKENTTIIDLGS----TKAKIIESVPK 103 (275)
T ss_pred CcHH-HHHHHH-HHHhc-cCCCCEEEECcc----chHHHHHHHHH
Confidence 9964 334444 34445 889999999744 24556666654
No 85
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.46 E-value=4.4e-06 Score=84.66 Aligned_cols=197 Identities=14% Similarity=0.121 Sum_probs=107.5
Q ss_pred CcceEEEEeCCCCCHHHHhcC-CCCeEEEEcCccCCccchhHHhhCCcEEEecCCCC--CC-C----hhhHHHHHHHHHH
Q 019081 54 ANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--TG-N----AASCAELTIYLML 125 (346)
Q Consensus 54 ~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~--~~-n----a~~vAE~~~~~~l 125 (346)
.++|+++--. +.+.+-++.+ ++--+|+...-..|.=-++.+.++||.+.-.-..- +. . =.++|+.+=
T Consensus 63 ~~adiIlkV~-~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG---- 137 (511)
T TIGR00561 63 WQSDIILKVN-APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG---- 137 (511)
T ss_pred hcCCEEEEeC-CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH----
Confidence 3578776433 3445456665 45555665555445444677888898876422110 00 0 012233222
Q ss_pred HHHHhHHHHHHHHH---hcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhh-
Q 019081 126 GLLRKQNEMRMAIE---QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV- 201 (346)
Q Consensus 126 ~~~R~~~~~~~~~~---~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~- 201 (346)
.|-.....+..- .|.- ...| .+.+.++.|+|+|.+|...++.++.+|++|+++|++..+...... .+..+
T Consensus 138 --y~Avi~Aa~~lgr~~~g~~-taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~--lGa~~v 211 (511)
T TIGR00561 138 --YRAIIEAAHEFGRFFTGQI-TAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS--MGAEFL 211 (511)
T ss_pred --HHHHHHHHHHhhhhcCCce-ecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cCCeEE
Confidence 121111111110 1111 0112 455789999999999999999999999999999987643211100 00000
Q ss_pred ccccccccccc--cCCc----------CCHHHHhhcCCEEEEee--cCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 202 KNGIIDDLVDE--KGCH----------EDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 202 ~~~~~~~~~~~--~~~~----------~~l~ell~~aDiV~~~l--Plt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
.-+...+.... +... .-+.+.++++|+|+.++ |.. ....++.++.++.||+|+++||+|-
T Consensus 212 ~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~-~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 212 ELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGK-PAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred eccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCC-CCCeeehHHHHhhCCCCCEEEEeee
Confidence 00000000000 0000 11456678899998876 432 2346899999999999999999973
No 86
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.46 E-value=1.3e-06 Score=82.30 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=74.0
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc-ccc--hhhhccccccc-----cccccCCcCCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSS--ALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-~~~--~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (346)
++|+|||+|.||..+|..+...|++|+++|++......... ... ......+.+.. .........+++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 58999999999999999999999999999987644210000 000 00000000000 000000124554 4789
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
||+|+.++|...+.+.-+-++.-+.++++++|+....| +....|.+.+.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~ 131 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK 131 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence 99999999977665544445555678999988444333 66668888874
No 87
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.45 E-value=6.5e-07 Score=88.34 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=88.6
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCC---cCCHHHHhhcCCEEE
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGC---HEDIFEFASKADVVV 230 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~l~ell~~aDiV~ 230 (346)
+|+|||+|.||..+|..++ .|++|++||++..+...-.... .+.....+.+... .... ..+..+++++||+|+
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~--~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vi 78 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRI--SPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVI 78 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCC--CCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEE
Confidence 6999999999999998776 4999999998765421100000 0000000001100 1111 134667789999999
Q ss_pred EeecCCcc-ccCCCCH-------HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCC---C
Q 019081 231 CCLSLNKQ-TAGIVNK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP---I 299 (346)
Q Consensus 231 ~~lPlt~~-T~~li~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~p---L 299 (346)
+++|...+ ..+.+|- +.+..+++|.++|+.|.-.+-..+.+.+.+.+..+ +|.+|.+.+.+. +
T Consensus 79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~ 152 (388)
T PRK15057 79 IATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDN 152 (388)
T ss_pred EeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccc
Confidence 99995422 1122221 22334799999999999999999999988765332 347887766544 4
Q ss_pred CCCCceEE
Q 019081 300 LKFKNVLI 307 (346)
Q Consensus 300 ~~~~nvii 307 (346)
...|.|++
T Consensus 153 ~~p~rvv~ 160 (388)
T PRK15057 153 LHPSRIVI 160 (388)
T ss_pred cCCCEEEE
Confidence 44455554
No 88
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.43 E-value=1.3e-06 Score=82.79 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=88.5
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---cchhhhccccccc-----cccccCCcCCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (346)
++|+|||.|.||..+|..+...|++|++||++.......... .....++.+.+.. .........+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 589999999999999999999999999999875432110000 0000000000000 000001124554 4789
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHh-CCCeEEEEecCCCCCCCCCCCCCCCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLEC-GHLGGLGIDVAWTEPFDPNDPILKFK 303 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EPl~~~~pL~~~~ 303 (346)
||+|+.++|...+.+..+-++....++++++|+ |+|.-. ..++.+.+.. .++ .++-.|. |.+ -. +
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~~r~--~g~h~~~--p~~-~~-----~ 150 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRPERF--IGIHFMN--PVP-VM-----K 150 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCcccE--EEeeccC--Ccc-cC-----c
Confidence 999999999776655444456667789999998 665544 3467776642 233 3455554 322 12 3
Q ss_pred ceEEccCCCCCcHHHHHHH
Q 019081 304 NVLITPHVGGVTEHSYRSM 322 (346)
Q Consensus 304 nviiTPH~a~~t~~~~~~~ 322 (346)
-+-+.|+.++ +++..+++
T Consensus 151 ~vei~~g~~t-~~~~~~~~ 168 (292)
T PRK07530 151 LVELIRGIAT-DEATFEAA 168 (292)
T ss_pred eEEEeCCCCC-CHHHHHHH
Confidence 3456676443 44444443
No 89
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.43 E-value=3.8e-07 Score=85.78 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=75.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHcc--CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK 225 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~--~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~ 225 (346)
...+|||||+|.||+.+++.+.. .|+++. ++|++..+.. .....++ ...++++++++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~-----------------~~a~~~g~~~~~~~~eell~~ 67 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHA-----------------DFIWGLRRPPPVVPLDQLATH 67 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHH-----------------HHHHhcCCCcccCCHHHHhcC
Confidence 34789999999999999999875 588876 6777643310 1111111 24689999999
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 280 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i 280 (346)
+|+|++|+|... ..-+ ....++.|.-++..+.|.+.+.++|.++.+++..
T Consensus 68 ~D~Vvi~tp~~~--h~e~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 68 ADIVVEAAPASV--LRAI---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred CCEEEECCCcHH--HHHH---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence 999999998432 2111 2333566777777889988888999999888643
No 90
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.38 E-value=1.2e-06 Score=83.13 Aligned_cols=80 Identities=16% Similarity=0.319 Sum_probs=66.1
Q ss_pred ccccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||+|+||| .|.+|+.+|.+|..-|+.|++++.+. .+++++.++|
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT------------------------------~~l~e~~~~A 202 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRT------------------------------RDLPAVCRRA 202 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCC------------------------------CCHHHHHhcC
Confidence 3579999999999 99999999999999999999985211 1567889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|+|+++++... ++.+.. +|+|+++||+|--.
T Consensus 203 DIVIsavg~~~----~v~~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 203 DILVAAVGRPE----MVKGDW---IKPGATVIDVGINR 233 (296)
T ss_pred CEEEEecCChh----hcchhe---ecCCCEEEEcCCcc
Confidence 99999998643 455544 89999999998544
No 91
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.38 E-value=9.9e-07 Score=85.02 Aligned_cols=115 Identities=22% Similarity=0.169 Sum_probs=75.3
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
.+|+|||+|.||..+|..|...|++|.+|+|+......-... ......+ + ...........++.++++.||+|+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~-g--~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLP-G--VALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCC-C--CcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 489999999999999999999999999999964321100000 0000000 0 00000011235788888999999999
Q ss_pred ecCCccccCCCCHHHHccCCCCcEEEEcCCC-CCCC--HHHHHHHHHh
Q 019081 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARG-GLLD--YEAIAHYLEC 277 (346)
Q Consensus 233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg-~~vd--~~aL~~aL~~ 277 (346)
+|.. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 9965 22 5666889999999999997 4332 4566666654
No 92
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.38 E-value=5.5e-07 Score=84.51 Aligned_cols=103 Identities=27% Similarity=0.432 Sum_probs=78.8
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc-----cCCcCCHHHHhh
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-----KGCHEDIFEFAS 224 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~ell~ 224 (346)
.....+|.|+|.|-+|..-|+.+.++|.+|...|.+..+...- ++.+.. +.+...+++.+.
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~l--------------dd~f~~rv~~~~st~~~iee~v~ 230 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQL--------------DDLFGGRVHTLYSTPSNIEEAVK 230 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhh--------------hHhhCceeEEEEcCHHHHHHHhh
Confidence 3667789999999999999999999999999999886542110 111111 114567899999
Q ss_pred cCCEEEEe--ecCCccccCCCCHHHHccCCCCcEEEEcC--CCCCCC
Q 019081 225 KADVVVCC--LSLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLD 267 (346)
Q Consensus 225 ~aDiV~~~--lPlt~~T~~li~~~~l~~mk~gailIN~s--Rg~~vd 267 (346)
++|+|+.. +| -.....++.++.+++||||+++|+++ .|+++.
T Consensus 231 ~aDlvIgaVLIp-gakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~E 276 (371)
T COG0686 231 KADLVIGAVLIP-GAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFE 276 (371)
T ss_pred hccEEEEEEEec-CCCCceehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence 99999765 45 35678899999999999999999996 455443
No 93
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.37 E-value=1.7e-06 Score=82.00 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=87.6
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhcccccc-----ccccccCCcCCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIID-----DLVDEKGCHEDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~~~~l~ell~~ 225 (346)
++|||||.|.||..+|..+...|++|+.||+++......... ...+ .+..+.+. ..........++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 489999999999999999999999999999986542110000 0000 00000000 000000023566 55899
Q ss_pred CCEEEEeecCCccccCCCCHHHHccC-CCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeEEEEecCCCCCCCCCCCCCCCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARGGLLDYEAIAHYLEC-GHLGGLGIDVAWTEPFDPNDPILKFK 303 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~m-k~gailIN~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EPl~~~~pL~~~~ 303 (346)
||+|+-++|.+.+.+.-+-.+.-+.+ +++++|++.+.+-. ..++..+++. .++ .++..|.+-| -.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~~~r~--~g~hf~~P~~--------~~~ 152 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKRPGRV--LGLHFFNPVP--------VLP 152 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCCCccE--EEEecCCCcc--------cCc
Confidence 99999999998887776665444445 89999988766544 4444454432 233 4566665332 234
Q ss_pred ceEEccCCCC
Q 019081 304 NVLITPHVGG 313 (346)
Q Consensus 304 nviiTPH~a~ 313 (346)
-|-++||.+.
T Consensus 153 lvElv~~~~T 162 (286)
T PRK07819 153 LVELVPTLVT 162 (286)
T ss_pred eEEEeCCCCC
Confidence 4556666443
No 94
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.36 E-value=2.8e-06 Score=80.54 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=79.4
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccc----hhh--hcccccc-----ccccccCCcCCHHHH
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS----ALA--VKNGIID-----DLVDEKGCHEDIFEF 222 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~--~~~~~~~-----~~~~~~~~~~~l~el 222 (346)
++|+|||+|.||..+|..+...|++|++||++............ .+. +..+.+. ..........++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999987643211000000 000 0000000 000000112345 56
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 291 (346)
+++||+|+.++|...+.+.-+-++.-+.++++++|+++..| +...++.+.+... -.-.++..|.+-
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P~ 148 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNPA 148 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCCc
Confidence 79999999999976543433334444557899999877666 4667777777532 222345555433
No 95
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.36 E-value=1.8e-06 Score=91.96 Aligned_cols=139 Identities=20% Similarity=0.227 Sum_probs=87.3
Q ss_pred CeEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~ 231 (346)
++|+|||+|.||.++++.++..| .+|+++|++..+..... ..... .....++++++++||+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-------------~~g~~-~~~~~~~~~~~~~aDvVil 69 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-------------SLGVI-DRGEEDLAEAVSGADVIVL 69 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-------------HCCCC-CcccCCHHHHhcCCCEEEE
Confidence 68999999999999999999888 58999998754311000 00000 0023467888999999999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCC---------CCCCCCCC
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD---------PNDPILKF 302 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~---------~~~pL~~~ 302 (346)
++|.. .+..++. +.-..++++.++++++.-.....+.+.+.+.... ..+...-|.. .+..|+.-
T Consensus 70 avp~~-~~~~vl~-~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~ 142 (735)
T PRK14806 70 AVPVL-AMEKVLA-DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRN 142 (735)
T ss_pred CCCHH-HHHHHHH-HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCC
Confidence 99953 3433332 2334568899999998654333444544443311 2233333421 22356677
Q ss_pred CceEEccCCCC
Q 019081 303 KNVLITPHVGG 313 (346)
Q Consensus 303 ~nviiTPH~a~ 313 (346)
.+++++|+...
T Consensus 143 ~~~~~~~~~~~ 153 (735)
T PRK14806 143 HKVILTPLAET 153 (735)
T ss_pred CeEEEECCCCC
Confidence 78899997554
No 96
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.33 E-value=1.9e-06 Score=81.28 Aligned_cols=80 Identities=21% Similarity=0.412 Sum_probs=67.8
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||.|. +|+.+|..|...|+.|+.++++. .++.+.+++|
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A 202 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA 202 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC
Confidence 4579999999999999 99999999999999999887531 2577889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|+|+++++. .++|.++. +|+|+++||+|--.
T Consensus 203 DIVIsAvg~----p~~i~~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 203 DVIVSAVGK----PGLVTKDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred CEEEECCCC----CcccCHHH---cCCCcEEEEcCCCc
Confidence 999999975 34788875 68999999998654
No 97
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.33 E-value=2.8e-06 Score=86.56 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=74.7
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc----cchhhhccccccccccc--cCCcCCHHHHhhcCC
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ----SSALAVKNGIIDDLVDE--KGCHEDIFEFASKAD 227 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aD 227 (346)
++|||||+|.||..+|..+...|++|++||++.......... ...+....+ ...... .....++.+++++||
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTD--APLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhcc--chhhhhhceEeeCCHHHHhcCCC
Confidence 489999999999999999999999999999976542110000 000000000 000000 012357889999999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
+|+.++|...+.+..+-++.-+.++++++ |.++..++ ....+.+.+..
T Consensus 83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 83 WIQESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEEEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCC
Confidence 99999998766555443444455777765 55555554 35577776644
No 98
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=2.9e-06 Score=82.22 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=101.7
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccc----cccccC-C-cCCHHHHhhcCC
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD----LVDEKG-C-HEDIFEFASKAD 227 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~-~~~l~ell~~aD 227 (346)
.++||||+|.||..+|-.+...|++|+|+|.+...-..-.... .+..+-..+. .+.... . ..+.++ ++.||
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~--~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE--SYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc--ceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence 6999999999999999999999999999998764321100000 0000000011 111111 1 234444 55999
Q ss_pred EEEEeecCCccccC-C------CC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC--CCeEEEEecC---CCCCC
Q 019081 228 VVVCCLSLNKQTAG-I------VN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG--HLGGLGIDVA---WTEPF 293 (346)
Q Consensus 228 iV~~~lPlt~~T~~-l------i~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g--~i~ga~lDV~---~~EPl 293 (346)
++++|+| ||-+.+ - .+ +..-..||+|.++|=-|.-..-.++.++.-|.+. .+ ..+-|+| .+|-.
T Consensus 87 v~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv 164 (436)
T COG0677 87 VFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERV 164 (436)
T ss_pred EEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCcccc
Confidence 9999999 555442 1 11 2234568999999999999999999999987764 23 2345754 67766
Q ss_pred CCCCCCCCCCceEEcc-CCCCCcHHHHHH
Q 019081 294 DPNDPILKFKNVLITP-HVGGVTEHSYRS 321 (346)
Q Consensus 294 ~~~~pL~~~~nviiTP-H~a~~t~~~~~~ 321 (346)
.|.+.+..+-| .| -+||.|+.+.+.
T Consensus 165 ~PG~~~~el~~---~~kVIgG~tp~~~e~ 190 (436)
T COG0677 165 LPGNVLKELVN---NPKVIGGVTPKCAEL 190 (436)
T ss_pred CCCchhhhhhc---CCceeecCCHHHHHH
Confidence 66776665433 33 257778776544
No 99
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.31 E-value=7.3e-07 Score=83.90 Aligned_cols=102 Identities=18% Similarity=0.335 Sum_probs=72.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCCC----EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD 227 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD 227 (346)
+++||||+|+||.++++.+..-|+ +|+++||+..+.. .+.+..+ ...+..+++.+||
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~e~~~~aD 65 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLK-----------------NASDKYGITITTNNNEVANSAD 65 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHH-----------------HHHHhcCcEEeCCcHHHHhhCC
Confidence 479999999999999999987664 6999998654311 1111111 2346778899999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
+|++++|. .....++ .+.-..++++.++|.+.=| ++.+.|-+.|.
T Consensus 66 iIiLavkP-~~~~~vl-~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 66 ILILSIKP-DLYSSVI-NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred EEEEEeCh-HHHHHHH-HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 99999994 5555555 2333446788999999776 56666666664
No 100
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.30 E-value=4.5e-06 Score=79.74 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=71.8
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---cchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
++|+|||+|.||..+|..+...|++|+++|++.......... ..+...+.+.............++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 589999999999999999999999999999865432110000 00000000000000000011346778899999999
Q ss_pred EeecCCcc-ccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeE
Q 019081 231 CCLSLNKQ-TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGG 282 (346)
Q Consensus 231 ~~lPlt~~-T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~g 282 (346)
+++|...+ ...++ .+.-..++++++++...-| +....+.+.+.. .++.|
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig 135 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVG 135 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEE
Confidence 99996543 23333 2222335677766533333 345677777653 34444
No 101
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.27 E-value=7e-07 Score=80.96 Aligned_cols=130 Identities=12% Similarity=0.138 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHH--HccCCCEEEE-EcCCCccccccc
Q 019081 117 AELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR--LRPFGVKIIA-TKRSWASHSQVS 193 (346)
Q Consensus 117 AE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~--l~~~G~~V~~-~d~~~~~~~~~~ 193 (346)
++|.+..++...|++.. | . ..++++|||+|.+|+.+++. ....|+++++ +|+++.+.....
T Consensus 64 ~gy~v~~l~~~~~~~l~---------~------~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i 127 (213)
T PRK05472 64 VGYNVEELLEFIEKILG---------L------D-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI 127 (213)
T ss_pred CCeeHHHHHHHHHHHhC---------C------C-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe
Confidence 45667777777777642 1 1 34589999999999999986 3467899876 565432210000
Q ss_pred cccchhhhccccccccccccCCcCCHHHHhhc--CCEEEEeecCCcc---ccCCCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081 194 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQ---TAGIVNKSFLSSMKKGSLLVNIARGGLLDY 268 (346)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~~~lPlt~~---T~~li~~~~l~~mk~gailIN~sRg~~vd~ 268 (346)
.... .....++.+++++ .|+|++++|.... +..+.......-|...++.+|+.+|-+|+.
T Consensus 128 --------------~g~~-v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~ 192 (213)
T PRK05472 128 --------------GGIP-VYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRN 192 (213)
T ss_pred --------------CCeE-EcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEE
Confidence 0000 0123567888755 9999999997654 223333333445677789999999999999
Q ss_pred HHHHHHHHh
Q 019081 269 EAIAHYLEC 277 (346)
Q Consensus 269 ~aL~~aL~~ 277 (346)
++|..+|..
T Consensus 193 ~~l~~~l~~ 201 (213)
T PRK05472 193 VDLTVELQT 201 (213)
T ss_pred echHHHHHH
Confidence 999999873
No 102
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.25 E-value=1.7e-06 Score=81.56 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=72.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK 225 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~ 225 (346)
.+.+|||||+|+||.++++.+...| .+|+++||+..+... .+...++ ...+..+++.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~----------------~l~~~~g~~~~~~~~e~~~~ 65 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQ----------------ELHQKYGVKGTHNKKELLTD 65 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHH----------------HHHHhcCceEeCCHHHHHhc
Confidence 3468999999999999999998777 689999986432100 1111111 23467788899
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
||+|++++|.. ....++ .+....++++.++|++.-| +..+.+.+.+..
T Consensus 66 aDvVilav~p~-~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 66 ANILFLAMKPK-DVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred CCEEEEEeCHH-HHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 99999999953 444444 3334456789999998644 356666666643
No 103
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.25 E-value=2.8e-06 Score=79.94 Aligned_cols=123 Identities=25% Similarity=0.359 Sum_probs=86.0
Q ss_pred ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||+++|||. |.+|+.+|.+|...|+.|+++... ..++.+..++|
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~------------------------------t~~l~~~~~~A 202 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR------------------------------TRNLAEVARKA 202 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence 46899999999999 999999999999999999997321 12678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|+++++... ++.... +|+|+++||+|--.+. +|++.| ||-..+- .----.
T Consensus 203 DIVI~avg~~~----~v~~~~---ik~GavVIDvgin~~~----------~gkl~G---DVdf~~v--------~~~a~~ 254 (284)
T PRK14179 203 DILVVAIGRGH----FVTKEF---VKEGAVVIDVGMNRDE----------NGKLIG---DVDFDEV--------AEVASY 254 (284)
T ss_pred CEEEEecCccc----cCCHHH---ccCCcEEEEecceecC----------CCCeec---CccHHHH--------HhhccE
Confidence 99999998543 566655 7999999999854432 356654 5532221 011135
Q ss_pred EccCCCCCcHHHHHHHHHHHHH
Q 019081 307 ITPHVGGVTEHSYRSMAKVVGD 328 (346)
Q Consensus 307 iTPH~a~~t~~~~~~~~~~~~~ 328 (346)
+||-=||.-+-+..-+.+...+
T Consensus 255 iTPVPGGVGp~T~a~L~~N~~~ 276 (284)
T PRK14179 255 ITPVPGGVGPMTITMLMEQTYQ 276 (284)
T ss_pred ecCCCCCchHHHHHHHHHHHHH
Confidence 8998777655444333333333
No 104
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.24 E-value=1.2e-06 Score=76.35 Aligned_cols=112 Identities=24% Similarity=0.367 Sum_probs=69.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccc----cc-----c-cC-CcC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL----VD-----E-KG-CHE 217 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~-~~-~~~ 217 (346)
..+...+|.|+|.|++|+..++.++++|++|+.+|.+.......... ....+....-... ++ + .. ...
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESL-GAYFIEVDYEDHLERKDFDKADYYEHPESYES 94 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT-TTEESEETTTTTTTSB-CCHHHCHHHCCHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcc-cCceEEEcccccccccccchhhhhHHHHHhHH
Confidence 45677899999999999999999999999999999865321110000 0000000000000 00 0 00 123
Q ss_pred CHHHHhhcCCEEEE-eecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 218 DIFEFASKADVVVC-CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 218 ~l~ell~~aDiV~~-~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
.|.+.++.+|+|++ ++-.......++.++.++.||+|++++++|
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 57888999999986 343466788899999999999999999996
No 105
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.23 E-value=1e-05 Score=77.34 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=83.9
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhcccccc-----ccccccCCcCCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIID-----DLVDEKGCHEDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~~~~l~ell~~ 225 (346)
++|+|||+|.||..+|..+...|++|++||++.......... ...+ -+..+.+. ..........++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999975421110000 0000 00000000 000000123578888999
Q ss_pred CCEEEEeecCCccccCCCCHHHHcc-CCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n 304 (346)
||+|+.++|...+....+-.+ ++. .+++.++. .+... .....+.+.+..... ...|-+-+ | -+-.+=
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~-ssts~-~~~~~la~~~~~~~~--~~~~hp~~-p------~~~~~l 150 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILA-SSTSA-LLASAFTEHLAGRER--CLVAHPIN-P------PYLIPV 150 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEE-EeCCC-CCHHHHHHhcCCccc--EEEEecCC-C------cccCce
Confidence 999999999764433332222 344 44455444 33333 346677777754321 23343322 1 111234
Q ss_pred eEEccCCCCCcHHHHHH
Q 019081 305 VLITPHVGGVTEHSYRS 321 (346)
Q Consensus 305 viiTPH~a~~t~~~~~~ 321 (346)
+.++||-++ +++..++
T Consensus 151 veiv~~~~t-~~~~~~~ 166 (308)
T PRK06129 151 VEVVPAPWT-APATLAR 166 (308)
T ss_pred EEEeCCCCC-CHHHHHH
Confidence 678887554 3444443
No 106
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.22 E-value=4.4e-06 Score=79.34 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=69.8
Q ss_pred HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIV 243 (346)
Q Consensus 165 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~li 243 (346)
|+.+|++|..-|++|++||++......... ..+.+... ...+..+++++||+|++++|..+.++.++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~------------e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl 99 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLW------------KKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA 99 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhh------------HHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH
Confidence 899999999899999999986542100000 01111111 34578899999999999999887788887
Q ss_pred CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
...+..+++|+++||+|.. +.+.++..|+.
T Consensus 100 -~GLaa~L~~GaIVID~STI---sP~t~~~~~e~ 129 (341)
T TIGR01724 100 -RTIIEHVPENAVICNTCTV---SPVVLYYSLEK 129 (341)
T ss_pred -HHHHhcCCCCCEEEECCCC---CHHHHHHHHHH
Confidence 5588899999999999764 45556655555
No 107
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.18 E-value=1.8e-06 Score=82.61 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=68.4
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccC-CcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKG-CHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~ell~~aDiV~~ 231 (346)
++|+|||+|.||..+|..|...|++|.+|+++.......... ..... ..... ..... ...+.+++++.||+|++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 77 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD--RENPR--YLPGIKLPDNLRATTDLAEALADADLILV 77 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc--Ccccc--cCCCCcCCCCeEEeCCHHHHHhCCCEEEE
Confidence 379999999999999999999999999999864321100000 00000 00000 00001 23577888999999999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL 266 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v 266 (346)
++|. ..++.++. +....++++.++|+++.|--.
T Consensus 78 ~v~~-~~~~~v~~-~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 78 AVPS-QALREVLK-QLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred eCCH-HHHHHHHH-HHHhhcCCCCEEEEEeecccC
Confidence 9995 45555553 344556889999999765433
No 108
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.17 E-value=8.5e-06 Score=83.19 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=85.0
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhcccccc-----ccccccCCcCCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIID-----DLVDEKGCHEDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~~~~l~ell~~ 225 (346)
++|||||+|.||..+|..+...|++|+.||++.......... ...+ .+..+.+. ..........++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 589999999999999999998899999999976542110000 0000 00000000 00000012356655 569
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEE-EEcCCCCCCCHHHHHHHHHh-CCCeEEEEecCCCCCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLEC-GHLGGLGIDVAWTEPF 293 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EPl 293 (346)
||+|+-++|...+.+..+-.+.-+.++++++| +|+|.-++ .++..+++. .++ .++..|.+-|.
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~v 151 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVPL 151 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCccc
Confidence 99999999998888777666555557899999 59987766 356666653 333 46777765443
No 109
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.17 E-value=4e-06 Score=85.41 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=85.6
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc---ccchhhhcccccc-----ccccccCCcCCHHHHhh
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIID-----DLVDEKGCHEDIFEFAS 224 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~l~ell~ 224 (346)
=++|||||+|.||..+|..+...|++|+.||++......... ......+..+.+. ..........++++ ++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 358999999999999999999999999999997654211000 0000000000000 00000012356755 57
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCC
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF 293 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl 293 (346)
+||+|+-++|...+.+..+-.+.-+.++++++|. |||.-++ ..+.++++. ...-.++..|.+-|.
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 9999999999888877766666556688888876 7766554 466777643 334567788776554
No 110
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.16 E-value=1.6e-06 Score=77.03 Aligned_cols=151 Identities=21% Similarity=0.241 Sum_probs=80.3
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc---C---CcCCHHHHhhcCC
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G---CHEDIFEFASKAD 227 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~l~ell~~aD 227 (346)
++|+|+|+|.+|..+|..++..|++|++||.+...-..-.. ...+..+..++++..+. + ...+.++.+++||
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~--g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN--GELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT--TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh--ccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 48999999999999999999999999999987642111000 00011111111221111 1 2357788899999
Q ss_pred EEEEeecCCcc-ccCCCC--------HHHHccCCCCcEEEEcCCCCCCCHHHHHH-HHHhCCCeEEEEe-cCCCCCCCCC
Q 019081 228 VVVCCLSLNKQ-TAGIVN--------KSFLSSMKKGSLLVNIARGGLLDYEAIAH-YLECGHLGGLGID-VAWTEPFDPN 296 (346)
Q Consensus 228 iV~~~lPlt~~-T~~li~--------~~~l~~mk~gailIN~sRg~~vd~~aL~~-aL~~g~i~ga~lD-V~~~EPl~~~ 296 (346)
++++|+| ||. ..+-.| +.....++++.++|.-|.-.+=..+.++. .|++..-.+.-++ +|.+|=+.+.
T Consensus 79 v~~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 79 VVFICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp EEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred eEEEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 9999999 443 233322 23455678999999999999988885554 4443322111111 3566755555
Q ss_pred C---CCCCCCceEE
Q 019081 297 D---PILKFKNVLI 307 (346)
Q Consensus 297 ~---pL~~~~nvii 307 (346)
+ .+...|.|++
T Consensus 158 ~a~~d~~~~~rvV~ 171 (185)
T PF03721_consen 158 RAIEDFRNPPRVVG 171 (185)
T ss_dssp SHHHHHHSSSEEEE
T ss_pred CcchhccCCCEEEE
Confidence 4 3445667764
No 111
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=4.2e-06 Score=75.97 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=90.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHH---hhcCCEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF---ASKADVV 229 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el---l~~aDiV 229 (346)
+++|.||+|++|..+++++..-|.+|++||+++.... ++..... ...+++++ |...-+|
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~-----------------~~~~~ga~~a~sl~el~~~L~~pr~v 63 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVE-----------------ELKDEGATGAASLDELVAKLSAPRIV 63 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHH-----------------HHHhcCCccccCHHHHHHhcCCCcEE
Confidence 3789999999999999999999999999999875421 1111111 23456665 4567899
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecC
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA 288 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~ 288 (346)
-+++|....|..+|+ +.-..|.+|-++|+-+-..--|.....+.|.+..|. .|||-
T Consensus 64 WlMvPag~it~~vi~-~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G 119 (300)
T COG1023 64 WLMVPAGDITDAVID-DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG 119 (300)
T ss_pred EEEccCCCchHHHHH-HHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence 999999877777764 344568899999999998888998999999999985 68885
No 112
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.15 E-value=1.9e-05 Score=80.32 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=105.7
Q ss_pred cceEEEEeCCCCCHHHHhcCC-CCeEEEEcCccCCccchhHHhhCCcEEEecCCCC--C-CCh----hhHHHHHHHHHHH
Q 019081 55 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-GNA----ASCAELTIYLMLG 126 (346)
Q Consensus 55 ~~d~~i~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~--~-~na----~~vAE~~~~~~l~ 126 (346)
++|+++.-.. .+.+-++.++ +--+|+......+.=-++.+.++||.+.-.--.- + +.. .+.|+.+=
T Consensus 65 ~~diilkV~~-P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG----- 138 (509)
T PRK09424 65 QSDIILKVNA-PSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG----- 138 (509)
T ss_pred cCCEEEEeCC-CCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence 5888774333 3444466654 4556666555555545677888898876421110 0 000 12222221
Q ss_pred HHHhHHHHHHHHHhcccCCCC---ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhh---
Q 019081 127 LLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA--- 200 (346)
Q Consensus 127 ~~R~~~~~~~~~~~~~~~~~~---~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~--- 200 (346)
+|-+....+.. ++.-... .....+.+|.|+|.|.+|...++.++.+|++|+++|++..+...... .+-.
T Consensus 139 -y~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes--lGA~~v~ 213 (509)
T PRK09424 139 -YRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES--MGAEFLE 213 (509)
T ss_pred -HHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cCCeEEE
Confidence 22221111111 1111100 12456999999999999999999999999999999987654221110 0000
Q ss_pred hccccccccccccC--CcCC--------HHHHhhcCCEEEEeecCCc-cccCCCCHHHHccCCCCcEEEEcCC
Q 019081 201 VKNGIIDDLVDEKG--CHED--------IFEFASKADVVVCCLSLNK-QTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 201 ~~~~~~~~~~~~~~--~~~~--------l~ell~~aDiV~~~lPlt~-~T~~li~~~~l~~mk~gailIN~sR 262 (346)
+....-......+. ...+ +.+.+..+|+|+.+..... ....++.++.++.||+|+++|++|=
T Consensus 214 i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 214 LDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred eccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00000000000000 0011 1222357999999875322 1345668999999999999999973
No 113
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.14 E-value=3e-06 Score=84.45 Aligned_cols=102 Identities=26% Similarity=0.397 Sum_probs=70.7
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 228 (346)
.+.|++++|+|+|.||+.+++.|+..| .+|++++|+..+..... ...........++.+.+..+|+
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la-------------~~~g~~~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLA-------------KELGGEAVKFEDLEEYLAEADI 243 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-------------HHcCCeEeeHHHHHHHHhhCCE
Confidence 478999999999999999999999999 68999998764311000 0000000123467788899999
Q ss_pred EEEeecCCccccCCCCHHHHccCC----CCcEEEEcCCCCCCC
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMK----KGSLLVNIARGGLLD 267 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk----~gailIN~sRg~~vd 267 (346)
|+.+++ .+..+++++.++.+. ...++|+.+...=||
T Consensus 244 Vi~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 244 VISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 999965 455688888887652 235788887544333
No 114
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.13 E-value=2.8e-05 Score=65.94 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=67.1
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|+|-+. +|+.+|..|...|+.|...+++. .++++..++|
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------------------------~~l~~~v~~A 72 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------------------------IQLQSKVHDA 72 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------------------------cCHHHHHhhC
Confidence 5689999999999876 58999999999999999887421 2677889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|+|+++++.. ++|+.+. +|+|+++|+++...
T Consensus 73 DIVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 73 DVVVVGSPKP----EKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CEEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence 9999998754 5788877 68999999998655
No 115
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.12 E-value=8e-07 Score=74.04 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=53.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEE-cCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 228 (346)
...+|||||.|++|..+++.|...|++|.++ .|+..+.. ....... ...+++++++++|+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~-----------------~a~~~~~~~~~~~~~~~~~~aDl 71 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAE-----------------RAAAFIGAGAILDLEEILRDADL 71 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHH-----------------HHHC--TT-----TTGGGCC-SE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccc-----------------ccccccccccccccccccccCCE
Confidence 3458999999999999999999999999876 44332210 1111111 34578899999999
Q ss_pred EEEeecCCccccCCCCHHHHcc--CCCCcEEEEcC
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSS--MKKGSLLVNIA 261 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~--mk~gailIN~s 261 (346)
+++++|.. ....+ -++.-.. .++|.+++-||
T Consensus 72 v~iavpDd-aI~~v-a~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 72 VFIAVPDD-AIAEV-AEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp EEE-S-CC-HHHHH-HHHHHCC--S-TT-EEEES-
T ss_pred EEEEechH-HHHHH-HHHHHHhccCCCCcEEEECC
Confidence 99999964 32222 2222222 57999999995
No 116
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.12 E-value=1.4e-05 Score=70.88 Aligned_cols=96 Identities=25% Similarity=0.340 Sum_probs=67.9
Q ss_pred CCccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC----cCCHH
Q 019081 146 PTGETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC----HEDIF 220 (346)
Q Consensus 146 ~~~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ 220 (346)
+.+.++.||++.|||-+.+ |+.+|..|..-|+.|+.+|.+........ . ..-.+.-. ..++.
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~----------~---~~~hs~t~~~~~~~~l~ 121 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRG----------E---SIRHEKHHVTDEEAMTL 121 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccc----------c---ccccccccccchhhHHH
Confidence 3467899999999999975 99999999999999999975332110000 0 00000000 11278
Q ss_pred HHhhcCCEEEEeecCCccccCC-CCHHHHccCCCCcEEEEcC
Q 019081 221 EFASKADVVVCCLSLNKQTAGI-VNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 221 ell~~aDiV~~~lPlt~~T~~l-i~~~~l~~mk~gailIN~s 261 (346)
+.+++||||+++++.. ++ +..+.+ |+|+++||+|
T Consensus 122 ~~~~~ADIVIsAvG~~----~~~i~~d~i---k~GavVIDVG 156 (197)
T cd01079 122 DCLSQSDVVITGVPSP----NYKVPTELL---KDGAICINFA 156 (197)
T ss_pred HHhhhCCEEEEccCCC----CCccCHHHc---CCCcEEEEcC
Confidence 8999999999999843 45 788774 8999999997
No 117
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=1.2e-05 Score=75.95 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=66.3
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|+|.|. +|+++|..|...|+.|+.+++.. .++.+.+++|
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------------------------~~L~~~~~~a 203 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------------------------QNLPELVKQA 203 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------------------------hhHHHHhccC
Confidence 4689999999999998 99999999999999999987621 2567778999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|+|+.+++ .+ ++++.+. +|+|+++||++-..
T Consensus 204 DIvI~AtG-~~---~~v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 204 DIIVGAVG-KP---ELIKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred CEEEEccC-CC---CcCCHHH---cCCCCEEEEEEEee
Confidence 99999996 22 3677765 69999999997544
No 118
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=9.3e-06 Score=76.24 Aligned_cols=80 Identities=16% Similarity=0.303 Sum_probs=68.1
Q ss_pred ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.|+++.|+|.+ .+|+.+|..+..+|+.|....++. .++.+.+++|
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------------------------~~L~~~~~~A 196 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------------------------ENLKAELRQA 196 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------------------------hHHHHHHhhC
Confidence 468999999999999 899999999999999998876421 2678899999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|+|+.+++.. +++.++.+ |+|+++||+|-..
T Consensus 197 DIvI~Avgk~----~lv~~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 197 DILVSAAGKA----GFITPDMV---KPGATVIDVGINQ 227 (279)
T ss_pred CEEEECCCcc----cccCHHHc---CCCcEEEEeeccc
Confidence 9999999632 68898885 9999999998554
No 119
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.10 E-value=4.4e-06 Score=77.81 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=70.4
Q ss_pred eEEEEecCHHHHHHHHHHccCCCE---EEEEcCCCccccccccccchhhhcccccccccccc--C-CcCCHHHHhhcCCE
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVK---IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--G-CHEDIFEFASKADV 228 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~ell~~aDi 228 (346)
+|||||+|+||+++++.+...|.+ +.+++|+..+.. .+.... . ...+..+++++||+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~aDv 64 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAA-----------------RLAERFPKVRIAKDNQAVVDRSDV 64 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHH-----------------HHHHHcCCceEeCCHHHHHHhCCE
Confidence 699999999999999999877753 577887643310 111111 1 23578888999999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG 278 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g 278 (346)
|++++|. .....++.. + .+++|.++|.++ .-+..+.|.+.+..+
T Consensus 65 Vilav~p-~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 65 VFLAVRP-QIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred EEEEeCH-HHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 9999993 444444432 3 257899999987 447888888887653
No 120
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.09 E-value=1.3e-05 Score=69.33 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=58.4
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.++..|...|+.|+..+.+. .++++.+++|
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------------------------~~l~~~~~~A 80 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------------------------KNLQEITRRA 80 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------------------------SSHHHHHTTS
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------------------------Ccccceeeec
Confidence 4579999999999996 89999999999999999876421 3678899999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 265 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~ 265 (346)
|+|+.+++- .++|..+. +|+|+++||++.-..
T Consensus 81 DIVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 81 DIVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV 112 (160)
T ss_dssp SEEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred cEEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence 999999863 45777765 599999999976554
No 121
>PRK07680 late competence protein ComER; Validated
Probab=98.07 E-value=6.2e-06 Score=77.44 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=69.7
Q ss_pred eEEEEecCHHHHHHHHHHccCCC----EEEEEcCCCccccccccccchhhhcccccccccccc-C--CcCCHHHHhhcCC
Q 019081 155 TVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKAD 227 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~aD 227 (346)
++||||+|.||+.+++.+...|. +|.+++|+..+.. .+.... + ...+..+++.+||
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~aD 64 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAY-----------------HIKERYPGIHVAKTIEEVISQSD 64 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHH-----------------HHHHHcCCeEEECCHHHHHHhCC
Confidence 69999999999999999887773 7999998754310 011111 1 2357778889999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
+|++++|. .....++ ++....++++.++|.++-| +..+.|-+.+.
T Consensus 65 iVilav~p-~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 65 LIFICVKP-LDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred EEEEecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 99999983 3344444 2333457788999999844 36667766554
No 122
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.06 E-value=7.1e-05 Score=68.54 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=101.7
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCE---EEEEcCCC----ccccccccccchhhhcccccccccccc---CCcC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRSW----ASHSQVSCQSSALAVKNGIIDDLVDEK---GCHE 217 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~---V~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 217 (346)
+..+.++++.|+|.|.+|+.+|+.|...|++ |+.+||+. .+... . ..+. ..+.... ....
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~-L---~~~~------~~la~~~~~~~~~~ 89 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDD-L---NPDK------NEIAKETNPEKTGG 89 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchh-h---hHHH------HHHHHHhccCcccC
Confidence 3568899999999999999999999999985 99999973 21100 0 0000 0011111 1113
Q ss_pred CHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC-CeEEEEecCCCCCCCCC
Q 019081 218 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH-LGGLGIDVAWTEPFDPN 296 (346)
Q Consensus 218 ~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EPl~~~ 296 (346)
++.+.++++|+|+.+.| .++++.+.++.|+++.++...+.. ..|.-+.+|.+.|. |..-|. +.+
T Consensus 90 ~l~~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~~--- 154 (226)
T cd05311 90 TLKEALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SDF--- 154 (226)
T ss_pred CHHHHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CCC---
Confidence 67788889999999876 478899999999999999988833 34544444555443 333331 221
Q ss_pred CCCCCCCceEEccCCCCC-----cHHHHHHHHHHHHHHHHHHH
Q 019081 297 DPILKFKNVLITPHVGGV-----TEHSYRSMAKVVGDVALQLH 334 (346)
Q Consensus 297 ~pL~~~~nviiTPH~a~~-----t~~~~~~~~~~~~~ni~~~~ 334 (346)
.....|+++-|=++-. .....+.|...+++.+-.+.
T Consensus 155 --~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~ 195 (226)
T cd05311 155 --PNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLA 195 (226)
T ss_pred --ccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhC
Confidence 2467899999977632 11222445555555555443
No 123
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=1.6e-05 Score=74.83 Aligned_cols=122 Identities=27% Similarity=0.372 Sum_probs=85.6
Q ss_pred ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||+|.|||-| .+|+.+|..|...|+.|+++.... .++.+.+++|
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------------------------~~l~~~~~~A 201 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------------------------KDLSFYTQNA 201 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------------------------HHHHHHHHhC
Confidence 468999999999999 999999999999999999874311 2577889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|+++++. .+++..+++ |+|+++||++--.+ .+|++.| ||-..+ .. .---.
T Consensus 202 DIvV~AvG~----p~~i~~~~v---k~GavVIDvGi~~~----------~~gklvG---Dvd~e~-------v~-~~a~~ 253 (285)
T PRK14191 202 DIVCVGVGK----PDLIKASMV---KKGAVVVDIGINRL----------NDGRLVG---DVDFEN-------VA-PKASF 253 (285)
T ss_pred CEEEEecCC----CCcCCHHHc---CCCcEEEEeecccc----------cCCceec---cccHHH-------Hh-hhccE
Confidence 999999863 357888875 99999999986553 1356554 442111 00 01135
Q ss_pred EccCCCCCcHHHHHHHHHHHH
Q 019081 307 ITPHVGGVTEHSYRSMAKVVG 327 (346)
Q Consensus 307 iTPH~a~~t~~~~~~~~~~~~ 327 (346)
+||--||.-+-+..-+.+..+
T Consensus 254 iTPVPGGVGpvT~a~L~~N~~ 274 (285)
T PRK14191 254 ITPVPGGVGPMTIVSLLENTL 274 (285)
T ss_pred EecCCCCChHHHHHHHHHHHH
Confidence 899877765544433333333
No 124
>PLN00203 glutamyl-tRNA reductase
Probab=98.04 E-value=8e-06 Score=83.30 Aligned_cols=102 Identities=22% Similarity=0.294 Sum_probs=70.3
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 228 (346)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+..+....... + ...........++.+.+.+||+
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~---~-------~g~~i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE---F-------PDVEIIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH---h-------CCCceEeecHhhHHHHHhcCCE
Confidence 4889999999999999999999999997 699999976542110000 0 0000000123467788999999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCC-------cEEEEcCCCC
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKG-------SLLVNIARGG 264 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~g-------ailIN~sRg~ 264 (346)
|+.+.| .+..+|.++.++.|+++ -+|||.|-..
T Consensus 333 VIsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 333 VFTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred EEEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 999865 45568999999887532 3677776544
No 125
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=3.6e-05 Score=72.55 Aligned_cols=80 Identities=18% Similarity=0.373 Sum_probs=66.2
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||.|. +|+.+|..|...|+.|+.+.++. .++.+..++|
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A 203 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------------------------KNLRHHVRNA 203 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------------------------CCHHHHHhhC
Confidence 4589999999999999 99999999999999999876421 2678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|+|+++++.. +++..+. +|+|+++||+|--.
T Consensus 204 DIvi~avG~p----~~v~~~~---vk~gavVIDvGin~ 234 (285)
T PRK10792 204 DLLVVAVGKP----GFIPGEW---IKPGAIVIDVGINR 234 (285)
T ss_pred CEEEEcCCCc----ccccHHH---cCCCcEEEEccccc
Confidence 9999999532 3677755 69999999998443
No 126
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.98 E-value=9.2e-06 Score=81.15 Aligned_cols=93 Identities=30% Similarity=0.469 Sum_probs=66.5
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS 224 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~ 224 (346)
.+.|++++|+|.|.||+.+++.++..|+ +|++++|+..+.. .+....+ ...++.+.+.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~-----------------~la~~~g~~~~~~~~~~~~l~ 241 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE-----------------ELAEEFGGEAIPLDELPEALA 241 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH-----------------HHHHHcCCcEeeHHHHHHHhc
Confidence 4789999999999999999999999998 7999998754321 0111111 2245667788
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccC-----CCCcEEEEcCC
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSM-----KKGSLLVNIAR 262 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~m-----k~gailIN~sR 262 (346)
++|+|+.++|. ...+++.+.++.+ +.+.++|+.+-
T Consensus 242 ~aDvVI~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 242 EADIVISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred cCCEEEECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 99999999764 3446777777654 24567777754
No 127
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=3.1e-05 Score=72.97 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=65.9
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||.|. +|+.+|..|...|+.|+.++... .++.+..++|
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A 208 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------------------------DDLKKYTLDA 208 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------------------------CCHHHHHhhC
Confidence 4689999999999999 99999999999999999876321 2678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg 263 (346)
|+|++++.. .++|..+. +|+|+++||+|--
T Consensus 209 DIvv~AvG~----p~~i~~~~---vk~gavVIDvGin 238 (287)
T PRK14176 209 DILVVATGV----KHLIKADM---VKEGAVIFDVGIT 238 (287)
T ss_pred CEEEEccCC----ccccCHHH---cCCCcEEEEeccc
Confidence 999998753 24787774 6899999999853
No 128
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.97 E-value=9.3e-06 Score=81.74 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=83.9
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc------cCCcCCHHHHhhc---CCEEEEeec
Q 019081 164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE------KGCHEDIFEFASK---ADVVVCCLS 234 (346)
Q Consensus 164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~ell~~---aDiV~~~lP 234 (346)
||+.+|++|...|++|.+|||+..+.. .+... .....+++++.+. +|+|++++|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~-----------------~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~ 63 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTD-----------------EFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVK 63 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHH-----------------HHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECC
Confidence 689999999999999999999865421 11110 1134688888874 899999999
Q ss_pred CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081 235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287 (346)
Q Consensus 235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 287 (346)
..+.++.++ ...+..|.+|.++|+++....-+...+.+.+++..+.. +|+
T Consensus 64 ~g~~v~~Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~f--vda 113 (459)
T PRK09287 64 AGAPVDAVI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHF--IGM 113 (459)
T ss_pred CchHHHHHH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeE--Eec
Confidence 988888888 46788899999999999999999999999999888764 454
No 129
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.96 E-value=9.6e-06 Score=77.77 Aligned_cols=95 Identities=28% Similarity=0.433 Sum_probs=63.2
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhc
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK 225 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~ 225 (346)
+.|++|+|+|.|.||+.+++.++..| .+|++++|+..+.. .+....+ ...++.+.+.+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~-----------------~la~~~g~~~~~~~~~~~~l~~ 238 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE-----------------ELAKELGGNAVPLDELLELLNE 238 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHHcCCeEEeHHHHHHHHhc
Confidence 78999999999999999999998866 57999998764311 1111111 22356778889
Q ss_pred CCEEEEeecCCccccCCCCHHHHccC-CCCcEEEEcCCCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARGG 264 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~m-k~gailIN~sRg~ 264 (346)
+|+|+.++|.... ..+ .+..++.. +++.++|+.+...
T Consensus 239 aDvVi~at~~~~~-~~~-~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 239 ADVVISATGAPHY-AKI-VERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred CCEEEECCCCCch-HHH-HHHHHhhCCCCCeEEEEeCCCC
Confidence 9999999985432 111 22233222 3567888887543
No 130
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.91 E-value=6.9e-05 Score=69.92 Aligned_cols=100 Identities=26% Similarity=0.333 Sum_probs=65.2
Q ss_pred CeEEEEecCHHHHHHHHHHccCC---CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 228 (346)
++++|||+|.||..+++.+...| .+|.+++|+..... .....++ ...+.++++.+||+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRA-----------------ALAEEYGVRAATDNQEAAQEADV 65 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHH-----------------HHHHhcCCeecCChHHHHhcCCE
Confidence 47999999999999999998778 78999998754310 0111111 23567788899999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
|++++|.. ..+.++.. .-..+ +.++|.+.-|- ..+.+.+.+.
T Consensus 66 Vil~v~~~-~~~~v~~~-l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 66 VVLAVKPQ-VMEEVLSE-LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred EEEEcCHH-HHHHHHHH-HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 99999843 33333321 11122 46778775553 5666666654
No 131
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.90 E-value=2.4e-05 Score=70.12 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=63.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l 233 (346)
++++|+|.|+||..+|+++...|.+|++-.++..+....... .+ .......+.++..+.||+|++.+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~------------~l-~~~i~~~~~~dA~~~aDVVvLAV 68 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAA------------AL-GPLITGGSNEDAAALADVVVLAV 68 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHH------------hh-ccccccCChHHHHhcCCEEEEec
Confidence 589999999999999999999999999886654432110000 00 00012357889999999999999
Q ss_pred cCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081 234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263 (346)
Q Consensus 234 Plt~~T~~li~~~~l~~mk~gailIN~sRg 263 (346)
|.. ....+ -++....+. |-++|++.-.
T Consensus 69 P~~-a~~~v-~~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 69 PFE-AIPDV-LAELRDALG-GKIVIDATNP 95 (211)
T ss_pred cHH-HHHhH-HHHHHHHhC-CeEEEecCCC
Confidence 964 32222 233333344 8899998654
No 132
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.90 E-value=1.9e-05 Score=73.96 Aligned_cols=104 Identities=20% Similarity=0.278 Sum_probs=67.5
Q ss_pred CeEEEEecCHHHHHHHHHHccC--CCEE-EEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081 154 KTVFILGFGNIGVELAKRLRPF--GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 228 (346)
.++||||+|.||+.+++.+... ++++ .++|++..+.. .+.+..+ ...++++++.++|+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~-----------------~~a~~~~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAE-----------------NLASKTGAKACLSIDELVEDVDL 64 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH-----------------HHHHhcCCeeECCHHHHhcCCCE
Confidence 3799999999999999988764 5774 46787653311 1111111 24689999999999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH---HHHHHHHHhCC
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGH 279 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~ 279 (346)
|+++.|...- -.-....++.|.-++..+-|.+.|. +.|.++.+++.
T Consensus 65 Vvi~a~~~~~-----~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 65 VVECASVNAV-----EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred EEEcCChHHH-----HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 9999874221 1112233556666677788887763 46666666654
No 133
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.89 E-value=2.6e-05 Score=73.50 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=70.4
Q ss_pred CeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhcccccccccccc-C--CcCCHHHHhhcC
Q 019081 154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKA 226 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~a 226 (346)
.+++|||+|.||.++++.+...| .+|.+++++...... ...... . ...+..+++.+|
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~----------------~l~~~~~~~~~~~~~~e~~~~a 65 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFN----------------QLYDKYPTVELADNEAEIFTKC 65 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHH----------------HHHHHcCCeEEeCCHHHHHhhC
Confidence 37999999999999999998777 689999875422100 000111 1 135677889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
|+|++++|. .....++ .+....++++..+|.+.=| +..+.|-+.+..
T Consensus 66 DvVilavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~ 112 (277)
T PRK06928 66 DHSFICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG 112 (277)
T ss_pred CEEEEecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 999999994 3333333 2222346678899998777 677788877643
No 134
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.89 E-value=7.5e-05 Score=57.69 Aligned_cols=67 Identities=30% Similarity=0.500 Sum_probs=54.0
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (346)
..+.+++++|+|.|.+|+.+++.+..+ +.+|.++|+ |
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------------d 56 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------------D 56 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------------C
Confidence 568899999999999999999999988 456666531 9
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
+++.+.|.. +.+.++..+.|++++++++++
T Consensus 57 i~i~~~~~~----~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 57 ILVTATPAG----VPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred EEEEcCCCC----CCchHHHHHhcCCCCEEEecC
Confidence 999888753 455666788899999999874
No 135
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=9e-05 Score=69.76 Aligned_cols=123 Identities=24% Similarity=0.407 Sum_probs=86.2
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|..|...|+.|+.+... ..++.+..++|
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A 201 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR------------------------------TKDLPQVAKEA 201 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 5789999999999987 5999999999889999987532 13678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|||+++++. .+++..+.+ |+|+++||++--.+ .+|++.| ||-...- .. --=.
T Consensus 202 DIvI~AvG~----~~~i~~~~v---k~GavVIDvGin~~----------~~gkl~G---Dvdfe~~-------~~-~a~~ 253 (284)
T PRK14170 202 DILVVATGL----AKFVKKDYI---KPGAIVIDVGMDRD----------ENNKLCG---DVDFDDV-------VE-EAGF 253 (284)
T ss_pred CEEEEecCC----cCccCHHHc---CCCCEEEEccCccc----------CCCCeec---ccchHHH-------Hh-hccE
Confidence 999999874 347888874 89999999985553 1366654 5521110 00 1136
Q ss_pred EccCCCCCcHHHHHHHHHHHHH
Q 019081 307 ITPHVGGVTEHSYRSMAKVVGD 328 (346)
Q Consensus 307 iTPH~a~~t~~~~~~~~~~~~~ 328 (346)
+||-=||.-+-+...+.+..++
T Consensus 254 iTPVPGGVGpvT~a~L~~N~~~ 275 (284)
T PRK14170 254 ITPVPGGVGPMTITMLLANTLK 275 (284)
T ss_pred ecCCCCChHHHHHHHHHHHHHH
Confidence 7998788755544333333333
No 136
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=7.5e-05 Score=70.41 Aligned_cols=115 Identities=23% Similarity=0.441 Sum_probs=84.3
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|..|...|+.|+.++.. ..++.+..++|
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~------------------------------t~~l~~~~~~A 202 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK------------------------------TKNLAELTKQA 202 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC------------------------------chhHHHHHHhC
Confidence 4689999999999986 5999999999999999987531 13678899999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|+.+++. .++|+.+++ |+|+++||++.-.+ .+|++.| ||-..+ ... ---.
T Consensus 203 DIvI~AvG~----p~~i~~~~i---k~gavVIDvGi~~~----------~~gkl~G---Dvd~e~-------v~~-~a~~ 254 (284)
T PRK14190 203 DILIVAVGK----PKLITADMV---KEGAVVIDVGVNRL----------ENGKLCG---DVDFDN-------VKE-KASY 254 (284)
T ss_pred CEEEEecCC----CCcCCHHHc---CCCCEEEEeecccc----------CCCCeec---cCcHHH-------Hhh-hceE
Confidence 999999863 348998886 89999999987664 1355554 552111 011 1246
Q ss_pred EccCCCCCcHHHHH
Q 019081 307 ITPHVGGVTEHSYR 320 (346)
Q Consensus 307 iTPH~a~~t~~~~~ 320 (346)
+||.-||.-+-+..
T Consensus 255 iTPVPGGVGpvT~a 268 (284)
T PRK14190 255 ITPVPGGVGPMTIT 268 (284)
T ss_pred ecCCCCCChHHHHH
Confidence 89988887655443
No 137
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.87 E-value=0.00026 Score=66.72 Aligned_cols=123 Identities=21% Similarity=0.295 Sum_probs=86.3
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|.+|...|+.|+..... ..++.+..++|
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A 200 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK------------------------------TRNLKQLTKEA 200 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence 4689999999999987 5999999999999999887431 13678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|+++++. .++++.++ .|+|+++||++--.+. +|++.| ||-..+- . ----.
T Consensus 201 DIvI~AvG~----p~~i~~~~---vk~GavVIDvGin~~~----------~gkl~G---DVd~~~v-------~-~~a~~ 252 (282)
T PRK14169 201 DILVVAVGV----PHFIGADA---VKPGAVVIDVGISRGA----------DGKLLG---DVDEAAV-------A-PIASA 252 (282)
T ss_pred CEEEEccCC----cCccCHHH---cCCCcEEEEeeccccC----------CCCeee---cCcHHHH-------H-hhccE
Confidence 999999974 34788887 5899999999854431 355544 5532211 0 11246
Q ss_pred EccCCCCCcHHHHHHHHHHHHH
Q 019081 307 ITPHVGGVTEHSYRSMAKVVGD 328 (346)
Q Consensus 307 iTPH~a~~t~~~~~~~~~~~~~ 328 (346)
+||-=||.-+-+...+.+..++
T Consensus 253 iTPVPGGVGp~T~a~L~~N~~~ 274 (282)
T PRK14169 253 ITPVPGGVGPMTIASLMAQTVT 274 (282)
T ss_pred ecCCCCCcHHHHHHHHHHHHHH
Confidence 8998888655544333333333
No 138
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.87 E-value=1.3e-05 Score=69.21 Aligned_cols=104 Identities=17% Similarity=0.294 Sum_probs=62.0
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccc--ccccccCCcCCHHHHhhcCCEEEEe
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
+|+|+|.|+.|.++|..+...|.+|..|.|+......-. ..+....... .+........++++++++||+|+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~----~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEIN----ETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHH----HHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH----HhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec
Confidence 689999999999999999999999999998653210000 0000000000 0001111246899999999999999
Q ss_pred ecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
+|.. ..+.++ ++....++++..+|++..|=
T Consensus 77 vPs~-~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 77 VPSQ-AHREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp S-GG-GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred ccHH-HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence 9953 223332 23334467899999998663
No 139
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.85 E-value=9.2e-05 Score=65.87 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=67.3
Q ss_pred ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhc
Q 019081 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK 225 (346)
Q Consensus 148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~ 225 (346)
+..+.++++.|+|. |.+|+.+++.+...|.+|+.++|+..+....... +....+ ..... ......++.+.+++
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~---l~~~~~--~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS---LRARFG--EGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH---HHhhcC--CcEEEeeCCCHHHHHHHHhc
Confidence 45688999999996 9999999999998999999998875321100000 000000 00000 00112345578889
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD 267 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd 267 (346)
+|+|+.+.|....+ .+..+ ...+++.+++|+.+...++
T Consensus 98 ~diVi~at~~g~~~--~~~~~--~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEKLA--WAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred CCEEEECCCCCcee--chhhh--cccCceeEEEEccCCCCCC
Confidence 99999988865431 11111 1245578888887777554
No 140
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.84 E-value=0.00028 Score=66.91 Aligned_cols=134 Identities=22% Similarity=0.299 Sum_probs=89.9
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+.+ |+.+|..|..-|+.|+.+... ..++++..++|
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~------------------------------T~nl~~~~~~A 211 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR------------------------------TPDPESIVREA 211 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 46899999999999875 999999999889999987532 12678899999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV 305 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv 305 (346)
|+|++++.. .++|..+.+ |+|+++||+|--.+-+. ...+| ++. =||-..+- ...--
T Consensus 212 DIvv~AvGk----~~~i~~~~v---k~gavVIDvGin~~~~~-----~~~~g~kl~---GDvd~e~v--------~~~a~ 268 (299)
T PLN02516 212 DIVIAAAGQ----AMMIKGDWI---KPGAAVIDVGTNAVSDP-----SKKSGYRLV---GDVDFAEV--------SKVAG 268 (299)
T ss_pred CEEEEcCCC----cCccCHHHc---CCCCEEEEeeccccCcc-----cccCCCceE---cCcChHHh--------hhhce
Confidence 999999864 368888874 89999999985442111 11123 443 35532110 11123
Q ss_pred EEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 019081 306 LITPHVGGVTEHSYRSMAKVVGDVALQLH 334 (346)
Q Consensus 306 iiTPH~a~~t~~~~~~~~~~~~~ni~~~~ 334 (346)
.+||--||.-+-+..-+.+..++..++++
T Consensus 269 ~iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 297 (299)
T PLN02516 269 WITPVPGGVGPMTVAMLLKNTVDGAKRVF 297 (299)
T ss_pred EecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 58998787765554444444444444443
No 141
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.84 E-value=4.2e-05 Score=72.17 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=65.5
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhcccccccccccc-CCc-CCHHHHhhc
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCH-EDIFEFASK 225 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~ell~~ 225 (346)
..+.++++.|+|.|.+|++++..|+..| .+|++++|+..+...... ...... ... .++.+.+.+
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~-------------~~~~~~~~~~~~~~~~~~~~ 185 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK-------------LFGALGKAELDLELQEELAD 185 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-------------Hhhhccceeecccchhcccc
Confidence 4678999999999999999999999999 689999997643211000 000000 001 134566788
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
+|+|+.++|.......-...-.+..++++.+++++.-.+
T Consensus 186 ~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P 224 (278)
T PRK00258 186 FDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP 224 (278)
T ss_pred CCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC
Confidence 999999999754321101111223457778888886544
No 142
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.84 E-value=0.00023 Score=72.04 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=92.1
Q ss_pred CeEEEEecCHHHHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhccccccccccc----cC-CcCCHHHHhhcC
Q 019081 154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KG-CHEDIFEFASKA 226 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~l~ell~~a 226 (346)
.+|+|||+|.+|..+|..++.. |++|+++|.+......-.. ...+..+..+.++..+ .. ...+.++.+++|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~--g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS--DQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc--CCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 4799999999999999999855 6899999986543211000 0000001111122111 01 125677889999
Q ss_pred CEEEEeecCCcccc------------CCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe-cCCCC
Q 019081 227 DVVVCCLSLNKQTA------------GIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTE 291 (346)
Q Consensus 227 DiV~~~lPlt~~T~------------~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~E 291 (346)
|++++|+| ||... .+. -++.-..+++|.++|.-|.-.+=.++.+..-|.+.. .|.-+. +|.+|
T Consensus 80 dvi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PE 157 (473)
T PLN02353 80 DIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPE 157 (473)
T ss_pred CEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCC
Confidence 99999998 33321 111 123445578999999999988888889988887631 121112 35677
Q ss_pred CCCCCC---CCCCCCceEE
Q 019081 292 PFDPND---PILKFKNVLI 307 (346)
Q Consensus 292 Pl~~~~---pL~~~~nvii 307 (346)
=+.+.+ .+...|.|++
T Consensus 158 rl~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred ccCCCCcccccCCCCEEEE
Confidence 666655 4555566664
No 143
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=7.3e-05 Score=70.27 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=66.0
Q ss_pred ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-| .+|+.+|.+|...|+.|+..... ..++.+..++|
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~------------------------------T~~l~~~~~~A 201 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF------------------------------TKDLKAHTKKA 201 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CcCHHHHHhhC
Confidence 468999999999999 88999999999889999876421 12678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|+|++++.. .+++..+++ |+|+++||++--.
T Consensus 202 DIvV~AvGk----p~~i~~~~v---k~gavvIDvGin~ 232 (281)
T PRK14183 202 DIVIVGVGK----PNLITEDMV---KEGAIVIDIGINR 232 (281)
T ss_pred CEEEEecCc----ccccCHHHc---CCCcEEEEeeccc
Confidence 999999863 357888874 8999999998443
No 144
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.82 E-value=1.4e-05 Score=70.70 Aligned_cols=118 Identities=17% Similarity=0.203 Sum_probs=70.6
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc----cchhhhcccccc-----ccccccCCcCCHHHHhhc
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ----SSALAVKNGIID-----DLVDEKGCHEDIFEFASK 225 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~l~ell~~ 225 (346)
+|+|||.|.||+.+|..+...|++|..||++.......... +..+ +..+.+. ..........+++++. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRL-VRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHH-HHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhh-hhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 69999999999999999999999999999976532111100 0000 0000000 0000011246888888 9
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
||+|+=++|-.-+.+.-+-++.-+.++++++|...+ +-+.-.+|...+.
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT--Ssl~i~~la~~~~ 127 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNT--SSLSISELAAALS 127 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSS
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecC--CCCCHHHHHhccC
Confidence 999999999877766656666666788999876653 3355666777664
No 145
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=9.4e-05 Score=69.64 Aligned_cols=79 Identities=15% Similarity=0.353 Sum_probs=65.9
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|..|..-|+.|+..+... .++.+..++|
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------------------------~~l~~~~~~A 203 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------------------------QNLPSIVRQA 203 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 4689999999999987 59999999999999999876321 3678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg 263 (346)
|+|+++++. .+++..+. .|+|+++||++--
T Consensus 204 DIvIsAvGk----~~~i~~~~---ik~gavVIDvGin 233 (284)
T PRK14177 204 DIIVGAVGK----PEFIKADW---ISEGAVLLDAGYN 233 (284)
T ss_pred CEEEEeCCC----cCccCHHH---cCCCCEEEEecCc
Confidence 999999874 35788887 4899999999853
No 146
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=9.8e-05 Score=69.49 Aligned_cols=115 Identities=26% Similarity=0.434 Sum_probs=82.4
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|..|...|+.|+.+.... .++.+..++|
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------------------------~nl~~~~~~A 201 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA 201 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 4689999999999987 59999999998899999875321 3688889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|++++.. .++++.+. .|+|+++||++--.+ .+|++.| ||-... .. ----.
T Consensus 202 DIvIsAvGk----p~~i~~~~---vk~GavVIDvGin~~----------~~gkl~G---DVd~~~-------v~-~~a~~ 253 (282)
T PRK14166 202 DLIIVAAGC----VNLLRSDM---VKEGVIVVDVGINRL----------ESGKIVG---DVDFEE-------VS-KKSSY 253 (282)
T ss_pred CEEEEcCCC----cCccCHHH---cCCCCEEEEeccccc----------CCCCeeC---CCCHHH-------HH-hhccE
Confidence 999999874 35788887 489999999984432 1345544 442111 01 11246
Q ss_pred EccCCCCCcHHHHH
Q 019081 307 ITPHVGGVTEHSYR 320 (346)
Q Consensus 307 iTPH~a~~t~~~~~ 320 (346)
+||-=||.-+-+..
T Consensus 254 iTPVPGGVGp~T~a 267 (282)
T PRK14166 254 ITPVPGGVGPMTIA 267 (282)
T ss_pred ecCCCCCchHHHHH
Confidence 79987887654443
No 147
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.79 E-value=5.9e-05 Score=72.84 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=73.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccc-cccccc--cccCCcCCHHHHhhcCCEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG-IIDDLV--DEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~ell~~aDiV~ 230 (346)
++|+|||.|.||..+|..|...|.+|.+++|+.... ... ..+..+... ...... .......+. +.++.+|+|+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~--~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 78 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGD--ELR-AHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL 78 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHH--HHH-hcCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence 479999999999999999999999999999853210 000 000000000 000000 000012234 5678999999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG 282 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g 282 (346)
+++|. +.+..++ .+....++++.++|.+.- ++-..+.+.+.+...++..
T Consensus 79 l~vk~-~~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 79 VTVKS-AATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVLA 127 (341)
T ss_pred EEecC-cchHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEEE
Confidence 99985 4444444 334455788899888854 4455666777776655433
No 148
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=0.00011 Score=69.71 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=88.0
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|.+|...|+.|+.+... ..++.+..++|
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A 202 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR------------------------------TQDLASITREA 202 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 4689999999999987 5999999999999999887431 13688889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|+++++.. +++..+. .|+|+++||++--.+-+.. ++|++.| ||-..+ ... ---.
T Consensus 203 DIvIsAvGkp----~~i~~~~---ik~gavVIDvGin~~~~~~------~~gkl~G---Dvd~~~-------v~~-~a~~ 258 (297)
T PRK14186 203 DILVAAAGRP----NLIGAEM---VKPGAVVVDVGIHRLPSSD------GKTRLCG---DVDFEE-------VEP-VAAA 258 (297)
T ss_pred CEEEEccCCc----CccCHHH---cCCCCEEEEeccccccccc------cCCceeC---CccHHH-------HHh-hceE
Confidence 9999999742 5788887 4899999999865532211 1455544 553211 011 1236
Q ss_pred EccCCCCCcHHHHHHHHHHHHH
Q 019081 307 ITPHVGGVTEHSYRSMAKVVGD 328 (346)
Q Consensus 307 iTPH~a~~t~~~~~~~~~~~~~ 328 (346)
+||--||.-+-+...+.+..++
T Consensus 259 iTPVPGGVGp~T~a~L~~Nl~~ 280 (297)
T PRK14186 259 ITPVPGGVGPMTVTMLLVNTVL 280 (297)
T ss_pred ecCCCCCchHHHHHHHHHHHHH
Confidence 8999888765554433333333
No 149
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.77 E-value=5.6e-05 Score=72.88 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=63.2
Q ss_pred EEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCccccccccccchhhh--ccccccccccccC--CcCCHHHHhhcCCEEE
Q 019081 156 VFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAV--KNGIIDDLVDEKG--CHEDIFEFASKADVVV 230 (346)
Q Consensus 156 vgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~l~ell~~aDiV~ 230 (346)
|||+|||+||+.+++.+. .-+++|+++...............+|.. ............+ ...++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 699999999999999876 3478988765422110000000000110 0000000000001 1346899999999999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
.|. +.+.++.+++.+.+|+++++|+-.-
T Consensus 81 e~T---p~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DAT---PGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECC---CCCCChhhHHHHHhCCcCEEEECCC
Confidence 875 5677899999999999999988653
No 150
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=0.00019 Score=67.51 Aligned_cols=113 Identities=23% Similarity=0.450 Sum_probs=82.3
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|..|..-|+.|+.+.... .++.+..++|
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------------------------~~l~~~~~~A 202 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------------------------KNLKEVCKKA 202 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 4589999999999986 59999999998999999876321 2678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|+++++.. ++|..+. .|+|+++||++--.+ .|++.| ||-..+- .. ---.
T Consensus 203 DIvIsAvGkp----~~i~~~~---ik~gavVIDvGin~~-----------~gkl~G---Dvd~~~v-------~~-~a~~ 253 (278)
T PRK14172 203 DILVVAIGRP----KFIDEEY---VKEGAIVIDVGTSSV-----------NGKITG---DVNFDKV-------ID-KASY 253 (278)
T ss_pred CEEEEcCCCc----CccCHHH---cCCCcEEEEeecccc-----------CCceee---eccHHHH-------Hh-hccE
Confidence 9999998743 4788887 589999999974432 255554 6621110 00 1135
Q ss_pred EccCCCCCcHHHH
Q 019081 307 ITPHVGGVTEHSY 319 (346)
Q Consensus 307 iTPH~a~~t~~~~ 319 (346)
+||--||.-+-+.
T Consensus 254 iTPVPGGVGp~T~ 266 (278)
T PRK14172 254 ITPVPGGVGSLTT 266 (278)
T ss_pred ecCCCCCccHHHH
Confidence 8999888765443
No 151
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=0.0005 Score=64.91 Aligned_cols=133 Identities=24% Similarity=0.357 Sum_probs=91.4
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|..|...|+.|+.+.... .++.+..++|
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------------------------~~l~~~~~~A 199 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------------------------QDLPAVTRRA 199 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 4689999999999986 59999999998999998875321 2678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC--CeEEEEecCCCCCCCCCCCCCCCCc
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH--LGGLGIDVAWTEPFDPNDPILKFKN 304 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~--i~ga~lDV~~~EPl~~~~pL~~~~n 304 (346)
|+|++++.. .++++.+.+ |+|+++||++--.+.+ +.|+ +.| ||- .+ .... -
T Consensus 200 DIvIsAvGk----p~~i~~~~v---k~GavVIDVGin~~~~--------~~gk~~l~G---DVd-~~-------v~~~-a 252 (287)
T PRK14173 200 DVLVVAVGR----PHLITPEMV---RPGAVVVDVGINRVGG--------NGGRDILTG---DVH-PE-------VAEV-A 252 (287)
T ss_pred CEEEEecCC----cCccCHHHc---CCCCEEEEccCccccC--------CCCceeeec---ccc-Hh-------HHhh-C
Confidence 999999863 258888875 8999999998665422 1344 543 553 11 1111 1
Q ss_pred eEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 019081 305 VLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 337 (346)
Q Consensus 305 viiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~ 337 (346)
-.+||-=||.-+-+...+.+..++..++...|+
T Consensus 253 ~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~~ 285 (287)
T PRK14173 253 GALTPVPGGVGPMTVAMLMANTVIAALRRRGGR 285 (287)
T ss_pred cEEecCCCChhHHHHHHHHHHHHHHHHHHccCC
Confidence 258998777655544444444444444444444
No 152
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.76 E-value=0.0001 Score=68.97 Aligned_cols=98 Identities=32% Similarity=0.400 Sum_probs=73.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081 154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD 227 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD 227 (346)
.++||||+|+||++++..+..-| .+|++.+|+..... .+...++ ...+.+++..++|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~-----------------~l~~~~g~~~~~~~~~~~~~ad 64 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA-----------------ALAAEYGVVTTTDNQEAVEEAD 64 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH-----------------HHHHHcCCcccCcHHHHHhhCC
Confidence 58999999999999999998888 58999998765421 1222232 2457778999999
Q ss_pred EEEEeecCCccccCCCCHHHHccCC---CCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
+|++++.. + .-.+.++.+| ++.++|.++=| |..+.|.+.|.
T Consensus 65 vv~LavKP--q----~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 65 VVFLAVKP--Q----DLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred EEEEEeCh--H----hHHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 99999964 2 2356667776 68999999776 56677777775
No 153
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=0.00013 Score=68.97 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=66.6
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+.+ |+.+|..|...|+.|+.+.... .++.+..++|
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------------------------~~l~~~~~~A 204 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------------------------RDLADYCSKA 204 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 46899999999999875 9999999999999999875421 3678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|+|+++++. .+++..+++ |+|+++||++--.
T Consensus 205 DIvVsAvGk----p~~i~~~~i---k~gaiVIDVGin~ 235 (294)
T PRK14187 205 DILVAAVGI----PNFVKYSWI---KKGAIVIDVGINS 235 (294)
T ss_pred CEEEEccCC----cCccCHHHc---CCCCEEEEecccc
Confidence 999999874 347888875 7999999997544
No 154
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=0.00013 Score=68.88 Aligned_cols=78 Identities=23% Similarity=0.368 Sum_probs=65.0
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (346)
+.++.||++.|||-+.+ |+.+|..|.. .|+.|.....+ ..++.+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~------------------------------t~~l~~~ 201 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR------------------------------TPDLAEE 201 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC------------------------------chhHHHH
Confidence 46899999999999875 9999999987 78998876532 1368899
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
+++||+|+.+++ ..++|.++.+ |+|+++||++-
T Consensus 202 ~~~ADIVI~AvG----~p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 202 CREADFLFVAIG----RPRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred HHhCCEEEEecC----CCCcCCHHHc---CCCCEEEEeee
Confidence 999999999995 3457888886 99999999973
No 155
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.72 E-value=0.00014 Score=68.39 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=65.5
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|..|..-|+.|+...... .++.+..++|
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------------------------~dl~~~~k~A 202 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA 202 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------------------------CCHHHHhhhc
Confidence 4689999999999986 59999999998899999875321 3678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg 263 (346)
|+|+++++. .++|..++ .|+|+++||++--
T Consensus 203 DIvIsAvGk----p~~i~~~~---vk~gavVIDvGin 232 (282)
T PRK14180 203 DILIVAVGK----PNFITADM---VKEGAVVIDVGIN 232 (282)
T ss_pred CEEEEccCC----cCcCCHHH---cCCCcEEEEeccc
Confidence 999999974 24788877 4899999999843
No 156
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.72 E-value=0.00014 Score=68.65 Aligned_cols=123 Identities=23% Similarity=0.330 Sum_probs=85.6
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+. +|+.+|..|..-|+.|+..... ..++.+..++|
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------------------------------T~~L~~~~~~A 203 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------------------------------THNLSSITSKA 203 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 4579999999999987 5999999999889999886531 13688889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|++++.. .++|..+.+ |+|+++||+|--.+ .+|++.| ||-..+- ..---.
T Consensus 204 DIvV~AvGk----p~~i~~~~v---k~GavVIDvGin~~----------~~gkl~G---DVd~~~v--------~~~a~~ 255 (288)
T PRK14171 204 DIVVAAIGS----PLKLTAEYF---NPESIVIDVGINRI----------SGNKIIG---DVDFENV--------KSKVKY 255 (288)
T ss_pred CEEEEccCC----CCccCHHHc---CCCCEEEEeecccc----------CCCCeEC---CccHHHH--------HhhceE
Confidence 999999973 258888874 89999999984332 2455544 5521110 001136
Q ss_pred EccCCCCCcHHHHHHHHHHHHH
Q 019081 307 ITPHVGGVTEHSYRSMAKVVGD 328 (346)
Q Consensus 307 iTPH~a~~t~~~~~~~~~~~~~ 328 (346)
+||-=||.-+-+..-+.+..++
T Consensus 256 iTPVPGGVGp~T~a~L~~N~v~ 277 (288)
T PRK14171 256 ITPVPGGIGPMTIAFLLKNTVK 277 (288)
T ss_pred eCCCCCCcHHHHHHHHHHHHHH
Confidence 7998888765554433333333
No 157
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.72 E-value=0.00013 Score=70.20 Aligned_cols=127 Identities=24% Similarity=0.373 Sum_probs=86.2
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+.| |+.+|..|..-|+.|+...... .++.+..++|
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------------------------~nl~~~~~~A 258 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------------------------KDPEQITRKA 258 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------------------------CCHHHHHhhC
Confidence 46899999999999875 9999999998899998875321 2678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV 305 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv 305 (346)
|||+++++. .+++..+.+ |+|+++||+|--.+-+... ++| ++. =||...+-.. ---
T Consensus 259 DIvIsAvGk----p~~v~~d~v---k~GavVIDVGin~~~~~~~-----~~g~klv---GDVdfe~v~~--------~as 315 (345)
T PLN02897 259 DIVIAAAGI----PNLVRGSWL---KPGAVVIDVGTTPVEDSSC-----EFGYRLV---GDVCYEEALG--------VAS 315 (345)
T ss_pred CEEEEccCC----cCccCHHHc---CCCCEEEEccccccccccc-----cCCCeeE---ecccHHHHHh--------hcc
Confidence 999999874 357888874 8999999998544211100 124 444 3665333110 113
Q ss_pred EEccCCCCCcHHHHHHHHHHHH
Q 019081 306 LITPHVGGVTEHSYRSMAKVVG 327 (346)
Q Consensus 306 iiTPH~a~~t~~~~~~~~~~~~ 327 (346)
.+||-=||.-+-+..-+.+..+
T Consensus 316 ~iTPVPGGVGpmTvamLm~N~~ 337 (345)
T PLN02897 316 AITPVPGGVGPMTITMLLCNTL 337 (345)
T ss_pred ccCCCCCchhHHHHHHHHHHHH
Confidence 5789878875554433333333
No 158
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.72 E-value=0.00016 Score=68.12 Aligned_cols=122 Identities=23% Similarity=0.344 Sum_probs=85.3
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+.+ |+.+|.+|..-|+.|+.+... ..++.+..++|
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~------------------------------T~nl~~~~~~A 201 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR------------------------------TADLAGEVGRA 201 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 45799999999999875 999999999889999987532 12678889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|+++++. .++|..+++ |+|+++||++--.+. +|++.| ||-..+- .. ---.
T Consensus 202 DIvI~AvGk----~~~i~~~~i---k~gaiVIDvGin~~~----------~gkl~G---DVd~~~v-------~~-~a~~ 253 (282)
T PRK14182 202 DILVAAIGK----AELVKGAWV---KEGAVVIDVGMNRLA----------DGKLVG---DVEFAAA-------AA-RASA 253 (282)
T ss_pred CEEEEecCC----cCccCHHHc---CCCCEEEEeeceecC----------CCCeeC---CCCHHHH-------Hh-hccE
Confidence 999999973 458888874 899999999854432 255544 5532111 00 1135
Q ss_pred EccCCCCCcHHHHHHHHHHHH
Q 019081 307 ITPHVGGVTEHSYRSMAKVVG 327 (346)
Q Consensus 307 iTPH~a~~t~~~~~~~~~~~~ 327 (346)
+||--||.-+-+...+.+..+
T Consensus 254 iTPVPGGVGp~T~a~L~~N~~ 274 (282)
T PRK14182 254 ITPVPGGVGPMTRAMLLVNTV 274 (282)
T ss_pred ecCCCCCChHHHHHHHHHHHH
Confidence 899877775554433333333
No 159
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.00014 Score=68.92 Aligned_cols=80 Identities=15% Similarity=0.356 Sum_probs=64.8
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (346)
+.++.||++.|||-+. +|+.+|.+|.. .|+.|...... ..++.+.
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~------------------------------t~~l~~~ 203 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA------------------------------TKDIPSY 203 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC------------------------------chhHHHH
Confidence 4689999999999987 59999999876 57888876432 1367889
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
+++||+|+.+++.. ++|.++.+ |+|+++||+|-..
T Consensus 204 ~~~ADIvI~Avg~~----~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 204 TRQADILIAAIGKA----RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred HHhCCEEEEecCcc----CccCHHHc---CCCCEEEEeeccc
Confidence 99999999999532 68999887 9999999998544
No 160
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.71 E-value=4.4e-05 Score=71.69 Aligned_cols=90 Identities=31% Similarity=0.390 Sum_probs=64.4
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV 228 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 228 (346)
-|.||||+|||||.=|.+=|..|+.-|.+|++=-|.....- ..+.+.+ ..-+.+|+.++||+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~-----------------~kA~~dGf~V~~v~ea~k~ADv 77 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSW-----------------KKAKEDGFKVYTVEEAAKRADV 77 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhH-----------------HHHHhcCCEeecHHHHhhcCCE
Confidence 58999999999999999999999999999876544332210 0111112 34689999999999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEE
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLL 257 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gail 257 (346)
|.+.+|..- -..++..+.--.||+|+.|
T Consensus 78 im~L~PDe~-q~~vy~~~I~p~Lk~G~aL 105 (338)
T COG0059 78 VMILLPDEQ-QKEVYEKEIAPNLKEGAAL 105 (338)
T ss_pred EEEeCchhh-HHHHHHHHhhhhhcCCceE
Confidence 999999543 3334444555668888754
No 161
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.71 E-value=0.0001 Score=71.25 Aligned_cols=98 Identities=28% Similarity=0.335 Sum_probs=71.3
Q ss_pred ccccCCCeEEEEec-CHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhcccccccccccc--CCcCCHHHH
Q 019081 148 GETLLGKTVFILGF-GNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEF 222 (346)
Q Consensus 148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el 222 (346)
+.++.+++|.|+|. |.||+.+++.|. ..|. +++.++|+..+.. .+..+. +...++++.
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~-----------------~La~el~~~~i~~l~~~ 212 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ-----------------ELQAELGGGKILSLEEA 212 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH-----------------HHHHHhccccHHhHHHH
Confidence 45799999999999 899999999996 4564 8999988643311 111111 123468899
Q ss_pred hhcCCEEEEeecCCccccC-CCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081 223 ASKADVVVCCLSLNKQTAG-IVNKSFLSSMKKGSLLVNIARGGLLDY 268 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~-li~~~~l~~mk~gailIN~sRg~~vd~ 268 (346)
+.++|+|+.+. ..+.. +++.+.+ +++.++|+.|+..=||.
T Consensus 213 l~~aDiVv~~t---s~~~~~~I~~~~l---~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 213 LPEADIVVWVA---SMPKGVEIDPETL---KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred HccCCEEEECC---cCCcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence 99999988764 33334 4788754 89999999999887775
No 162
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.71 E-value=3.7e-05 Score=69.93 Aligned_cols=102 Identities=25% Similarity=0.248 Sum_probs=60.7
Q ss_pred eEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081 155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 155 tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l 233 (346)
+++||| .|.||+.+++.|...|.+|.+++|+..+....... + .+..............+..+.+++||+|++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~---~--~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAK---A--LEELGHGGSDIKVTGADNAEAAKRADVVILAV 76 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHH---H--HhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence 799997 89999999999999999999999865431100000 0 00000000000001135678889999999999
Q ss_pred cCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
|.. ....++ +.+....++.++|+++-|-
T Consensus 77 p~~-~~~~~l--~~l~~~l~~~vvI~~~ngi 104 (219)
T TIGR01915 77 PWD-HVLKTL--ESLRDELSGKLVISPVVPL 104 (219)
T ss_pred CHH-HHHHHH--HHHHHhccCCEEEEeccCc
Confidence 954 333333 1232222358999997663
No 163
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.70 E-value=4e-05 Score=72.86 Aligned_cols=105 Identities=26% Similarity=0.390 Sum_probs=78.7
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh-hcCCEE
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKADVV 229 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~aDiV 229 (346)
-.++||||+|++|+-.|+.+...|+.|+.+||+.-+ .....++ ..+.++++. +++|+|
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-------------------saa~~yg~~~ft~lhdlcerhpDvv 112 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-------------------SAAEKYGSAKFTLLHDLCERHPDVV 112 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-------------------HHHHHhcccccccHHHHHhcCCCEE
Confidence 458999999999999999999999999999986421 2223333 356777876 679999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
.+|+-. ..+..++-.--++++|.|++++++-.-....-+++.+-|-+
T Consensus 113 Llctsi-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk 159 (480)
T KOG2380|consen 113 LLCTSI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK 159 (480)
T ss_pred EEEehh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc
Confidence 999863 34555555455778899999999877777777777776654
No 164
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00018 Score=67.82 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=65.5
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (346)
+.++.||++.|||-+. +|+.+|.+|..- |+.|+..... ..++.+.
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~------------------------------T~~l~~~ 197 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ------------------------------SENLTEI 197 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC------------------------------CCCHHHH
Confidence 4689999999999987 599999999877 7888876431 1368889
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
+++||+|+++++.. +++..+++ |+|+++||++--.
T Consensus 198 ~~~ADIvV~AvG~p----~~i~~~~i---k~GavVIDvGin~ 232 (287)
T PRK14181 198 LKTADIIIAAIGVP----LFIKEEMI---AEKAVIVDVGTSR 232 (287)
T ss_pred HhhCCEEEEccCCc----CccCHHHc---CCCCEEEEecccc
Confidence 99999999999742 57888874 8999999998554
No 165
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.70 E-value=0.00014 Score=70.24 Aligned_cols=122 Identities=21% Similarity=0.348 Sum_probs=84.1
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.++.||++.|||-+.| |+.+|.+|...|+.|+.+... ..++.+..++|
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~------------------------------T~nl~~~~r~A 275 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------------------------TKNPEEITREA 275 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC------------------------------CCCHHHHHhhC
Confidence 46899999999999875 999999999999999987532 13688889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV 305 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv 305 (346)
|||++++.. .++|..+.+ |+|+++||++--.+-+... ++| ++. =||-..+-.+ ---
T Consensus 276 DIVIsAvGk----p~~i~~d~v---K~GAvVIDVGIn~~~~~~~-----~~g~klv---GDVdfe~v~~--------~as 332 (364)
T PLN02616 276 DIIISAVGQ----PNMVRGSWI---KPGAVVIDVGINPVEDASS-----PRGYRLV---GDVCYEEACK--------VAS 332 (364)
T ss_pred CEEEEcCCC----cCcCCHHHc---CCCCEEEeccccccccccc-----cCCCeEE---ecCcHHHHHh--------hcc
Confidence 999999863 357888874 8999999998544311000 113 444 3664322100 113
Q ss_pred EEccCCCCCcHHHHHHH
Q 019081 306 LITPHVGGVTEHSYRSM 322 (346)
Q Consensus 306 iiTPH~a~~t~~~~~~~ 322 (346)
.+||-=||.-+-+..-+
T Consensus 333 ~ITPVPGGVGpmTva~L 349 (364)
T PLN02616 333 AVTPVPGGVGPMTIAML 349 (364)
T ss_pred ccCCCCCchHHHHHHHH
Confidence 47898888765554333
No 166
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.69 E-value=7.6e-05 Score=68.61 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=65.6
Q ss_pred CCeEEEEecCHHHHHHHHHHccCC---CE-EEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcC
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKA 226 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G---~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~a 226 (346)
..+|||||+|.+|+++++.+...| .+ +++++++...... .....++ ...+++++++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 67 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLD----------------QLQARYNVSTTTDWKQHVTSV 67 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHH----------------HHHHHcCcEEeCChHHHHhcC
Confidence 568999999999999999887555 33 7777764211100 1111111 235788899999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG 278 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g 278 (346)
|+|++++|.. ..+.++. .++...++.++|.++=| ++.+.|-+.+..+
T Consensus 68 DiViiavp~~-~~~~v~~--~l~~~~~~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 68 DTIVLAMPPS-AHEELLA--ELSPLLSNQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred CEEEEecCHH-HHHHHHH--HHHhhccCCEEEEECCC--CCHHHHHHHcCCC
Confidence 9999999943 3233321 12222236789999755 5666676666544
No 167
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.68 E-value=7.8e-05 Score=73.60 Aligned_cols=98 Identities=30% Similarity=0.455 Sum_probs=70.6
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS 224 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~ 224 (346)
+|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+.. +++.+.+ ...++.+.+.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-----------------~La~~~~~~~~~l~el~~~l~ 237 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-----------------ELAKKLGAEAVALEELLEALA 237 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-----------------HHHHHhCCeeecHHHHHHhhh
Confidence 4899999999999999999999999995 7899999876531 1222222 3467788899
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccC-C--CCcEEEEcCCCCCCC
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSM-K--KGSLLVNIARGGLLD 267 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~m-k--~gailIN~sRg~~vd 267 (346)
++|+|+++. .....+|..+.+... + +.-++|+.+=..-|+
T Consensus 238 ~~DvVissT---sa~~~ii~~~~ve~a~~~r~~~livDiavPRdie 280 (414)
T COG0373 238 EADVVISST---SAPHPIITREMVERALKIRKRLLIVDIAVPRDVE 280 (414)
T ss_pred hCCEEEEec---CCCccccCHHHHHHHHhcccCeEEEEecCCCCCC
Confidence 999999984 455667777765543 2 124777776554433
No 168
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.67 E-value=0.0004 Score=64.95 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=86.9
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+.+|+||++.|||-++| |+.++..|..-++.|.+..... .++.+..++|
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------------------------~~l~~~~k~A 200 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------------------------KDLASITKNA 200 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------------------------CCHHHHhhhC
Confidence 46899999999999986 8999999999999999876421 3677889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 306 (346)
|+|++++-. .+++.++. .|+|+++|+++--.+-+ +++.| ||-..+ +....-.
T Consensus 201 DIvv~AvG~----p~~i~~d~---vk~gavVIDVGinrv~~----------~kl~G---DVdf~~--------v~~~a~~ 252 (283)
T COG0190 201 DIVVVAVGK----PHFIKADM---VKPGAVVIDVGINRVND----------GKLVG---DVDFDS--------VKEKASA 252 (283)
T ss_pred CEEEEecCC----cccccccc---ccCCCEEEecCCccccC----------CceEe---eccHHH--------HHHhhcc
Confidence 999999853 35777666 58999999998655433 66654 664332 2223346
Q ss_pred EccCCCCCcHHHHHH
Q 019081 307 ITPHVGGVTEHSYRS 321 (346)
Q Consensus 307 iTPH~a~~t~~~~~~ 321 (346)
+||--||.-+-+...
T Consensus 253 iTPVPGGVGPmTvam 267 (283)
T COG0190 253 ITPVPGGVGPMTVAM 267 (283)
T ss_pred cCCCCCccCHHHHHH
Confidence 899888887766543
No 169
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.65 E-value=8.4e-05 Score=72.19 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=67.6
Q ss_pred HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGI 242 (346)
Q Consensus 165 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~T~~l 242 (346)
|..+|..|...|++|++||++......... +.....+ ...+..+++++||+|++++|....++.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~-------------~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~V 98 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELW-------------KKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEI 98 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHH-------------HHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHH
Confidence 788999998889999999987542100000 0011111 2357778899999999999955436666
Q ss_pred CCHHHHccCCCCcEEEEcCCCCCCCH-HHHHHHHH
Q 019081 243 VNKSFLSSMKKGSLLVNIARGGLLDY-EAIAHYLE 276 (346)
Q Consensus 243 i~~~~l~~mk~gailIN~sRg~~vd~-~aL~~aL~ 276 (346)
+ ......+++|+++||++.+..... +.+.+.+.
T Consensus 99 l-~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 99 A-KNILPHLPENAVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred H-HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 6 356677899999999999876554 55556664
No 170
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.62 E-value=0.00028 Score=66.55 Aligned_cols=114 Identities=20% Similarity=0.367 Sum_probs=83.6
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 224 (346)
+.++.||++.|||-+. +|+.+|..|.. .|+.|+..... ..++.+..+
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~------------------------------T~~l~~~~k 202 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG------------------------------TRDLAAHTR 202 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC------------------------------CCCHHHHHH
Confidence 4689999999999976 59999999987 78999887532 136888999
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n 304 (346)
+||+|+++++.. ++|..+. .|+|+++||++.-.+ .+|++.| ||- .+ .....
T Consensus 203 ~ADIvV~AvGkp----~~i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a- 253 (284)
T PRK14193 203 RADIIVAAAGVA----HLVTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVA- 253 (284)
T ss_pred hCCEEEEecCCc----CccCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhC-
Confidence 999999998743 5788887 489999999986553 2456554 664 22 11111
Q ss_pred eEEccCCCCCcHHHHH
Q 019081 305 VLITPHVGGVTEHSYR 320 (346)
Q Consensus 305 viiTPH~a~~t~~~~~ 320 (346)
-.+||-=||.-+-+..
T Consensus 254 ~~iTPVPGGVGp~T~a 269 (284)
T PRK14193 254 GAVSPNPGGVGPMTRA 269 (284)
T ss_pred CEEeCCCCChhHHHHH
Confidence 2589998887555443
No 171
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.61 E-value=0.00016 Score=69.44 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHcc-CC-CEEEEEcCCCccccccccccchhhhcccccccccccc--C-CcCCHHHHhhcC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--G-CHEDIFEFASKA 226 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~ell~~a 226 (346)
..++|+|||+|.+|+.+++.+.. ++ .+|.+|+|+..+...... ...... . ...+.++++++|
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~-------------~~~~~g~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAA-------------ELRAQGFDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-------------HHHhcCCceEEeCCHHHHHhcC
Confidence 46799999999999999985443 44 579999997654211110 110000 1 236788899999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
|+|+++.|.+ ..++..+. +|+|+.+.-++
T Consensus 191 DIVi~aT~s~---~pvl~~~~---l~~g~~i~~ig 219 (314)
T PRK06141 191 DIISCATLST---EPLVRGEW---LKPGTHLDLVG 219 (314)
T ss_pred CEEEEeeCCC---CCEecHHH---cCCCCEEEeeC
Confidence 9998877643 45676654 68999444344
No 172
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.60 E-value=0.00031 Score=66.50 Aligned_cols=80 Identities=18% Similarity=0.336 Sum_probs=64.3
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (346)
+.++.||++.|||-+.+ |+.+|.+|..- ++.|+..... ..++.+.
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~nl~~~ 201 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR------------------------------SKNLKKE 201 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC------------------------------CCCHHHH
Confidence 45799999999999875 99999999765 6888876431 1368888
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
.++||+|+++++. .++|..++ .|+|+++||++--.
T Consensus 202 ~~~ADIvIsAvGk----p~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 202 CLEADIIIAALGQ----PEFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred HhhCCEEEEccCC----cCccCHHH---cCCCCEEEEecCcc
Confidence 9999999999874 24788877 58999999998544
No 173
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.55 E-value=0.00014 Score=72.35 Aligned_cols=93 Identities=17% Similarity=0.349 Sum_probs=64.3
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcccccccccccc-----CCcCCHHHH
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-----GCHEDIFEF 222 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~el 222 (346)
..+.|+++.|||.|.+|+.+++.|...|. ++++++|+..+.. .+...+ ..+.++.++
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~-----------------~La~~~~~~~~~~~~~l~~~ 239 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQ-----------------KITSAFRNASAHYLSELPQL 239 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHH-----------------HHHHHhcCCeEecHHHHHHH
Confidence 35889999999999999999999999996 6999999764321 111111 123566788
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg 263 (346)
+.++|+|+++.+.. ..+|..+... .+.-++|+.|=.
T Consensus 240 l~~aDiVI~aT~a~---~~vi~~~~~~--~~~~~~iDLavP 275 (414)
T PRK13940 240 IKKADIIIAAVNVL---EYIVTCKYVG--DKPRVFIDISIP 275 (414)
T ss_pred hccCCEEEECcCCC---CeeECHHHhC--CCCeEEEEeCCC
Confidence 99999999997643 3466666542 123456666533
No 174
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.54 E-value=0.00039 Score=65.97 Aligned_cols=132 Identities=18% Similarity=0.316 Sum_probs=86.4
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (346)
+.++.||++.|||-+. +|+.+|..|..- |+.|+..... ..++.+.
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~------------------------------T~~l~~~ 205 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR------------------------------SKNLARH 205 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC------------------------------CcCHHHH
Confidence 5689999999999986 599999999876 7888876431 1367888
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC--CeEEEEecCCCCCCCCCCCCC
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH--LGGLGIDVAWTEPFDPNDPIL 300 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~--i~ga~lDV~~~EPl~~~~pL~ 300 (346)
.++||+|++++.. .+++..+.+ |+|+++||++--.+-+. ..+|+ +.| ||-..+ ..
T Consensus 206 ~~~ADIvVsAvGk----p~~i~~~~i---k~gavVIDvGin~~~~~------~~~g~~~~~G---DVdfe~-------v~ 262 (297)
T PRK14168 206 CQRADILIVAAGV----PNLVKPEWI---KPGATVIDVGVNRVGTN------ESTGKAILSG---DVDFDA-------VK 262 (297)
T ss_pred HhhCCEEEEecCC----cCccCHHHc---CCCCEEEecCCCccCcc------ccCCCcceec---cccHHH-------HH
Confidence 9999999999863 347888874 89999999986543211 12343 433 442111 11
Q ss_pred CCCceEEccCCCCCcHHHHHHHHHHHHHHHHHH
Q 019081 301 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 333 (346)
Q Consensus 301 ~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~ 333 (346)
. ---.+||--||.-+-+...+.+..++..+++
T Consensus 263 ~-~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 294 (297)
T PRK14168 263 E-IAGKITPVPGGVGPMTIAMLMRNTLKSAKFH 294 (297)
T ss_pred h-hccEecCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 1 1135899877776555444444444443433
No 175
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.52 E-value=0.00017 Score=68.97 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD 227 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD 227 (346)
..++++|||.|.+|+..++.+.. ++. +|.+|+|+..+...... ....... ...+.++++++||
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~-------------~~~~~~~~~~~~~~~~av~~aD 190 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCA-------------HARALGPTAEPLDGEAIPEAVD 190 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-------------HHHhcCCeeEECCHHHHhhcCC
Confidence 56799999999999999998853 664 69999997654211110 1100000 1357889999999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
+|+.+.|.+ ..+++. .+|||+.++.++.
T Consensus 191 iVitaT~s~---~Pl~~~----~~~~g~hi~~iGs 218 (304)
T PRK07340 191 LVVTATTSR---TPVYPE----AARAGRLVVAVGA 218 (304)
T ss_pred EEEEccCCC---CceeCc----cCCCCCEEEecCC
Confidence 999998754 356764 2699999999974
No 176
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.51 E-value=0.00035 Score=67.44 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=62.9
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (346)
.++.++++.|||.|.||+.+|+.|...|. +|++.+|+....+. .+. ....-++..++|
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~---------------~~~------~~~~~~~~~~~D 228 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPY---------------RTV------VREELSFQDPYD 228 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccch---------------hhh------hhhhhhcccCCC
Confidence 36899999999999999999999999996 69999997642100 000 001114457899
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
+|+++.-.|.....++..+.++..++ -++|+.|=..
T Consensus 229 vVIs~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR 264 (338)
T PRK00676 229 VIFFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR 264 (338)
T ss_pred EEEEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence 99997433444455677776655433 3677765433
No 177
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.50 E-value=0.00023 Score=68.72 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=62.7
Q ss_pred CCeEEEEecCHHHHHHHHHHcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcC
Q 019081 153 GKTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA 226 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a 226 (346)
-+++||||+|.+|+..++.+.. -.-+|.+|||+..+...... .. ...+ ...+.++++++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~-------------~~-~~~g~~v~~~~~~~eav~~a 193 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFAL-------------RA-SDYEVPVRAATDPREAVEGC 193 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHH-------------HH-HhhCCcEEEeCCHHHHhccC
Confidence 4689999999999987665542 23579999998654211100 00 0111 246889999999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
|+|++++|. +..++..+. +|||+.+.+++-
T Consensus 194 DiVitaT~s---~~P~~~~~~---l~~g~~v~~vGs 223 (325)
T TIGR02371 194 DILVTTTPS---RKPVVKADW---VSEGTHINAIGA 223 (325)
T ss_pred CEEEEecCC---CCcEecHHH---cCCCCEEEecCC
Confidence 999999875 345777665 599999998873
No 178
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.50 E-value=0.00021 Score=64.24 Aligned_cols=111 Identities=27% Similarity=0.315 Sum_probs=71.0
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcccccccccc---chhhh-ccc----cccc--------ccc
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS---SALAV-KNG----IIDD--------LVD 211 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~---~~~~~-~~~----~~~~--------~~~ 211 (346)
..|..++|+|+|+|.+|..+|+.|...|. +++.+|+..-....-.+.. ..... +.+ .+.. ...
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 56888999999999999999999999999 6999998621110000000 00000 000 0000 000
Q ss_pred ccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081 212 EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 212 ~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~ 260 (346)
......++.++++++|+|+-+ ..+.+++.++..+....++...++...
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 000123566788999999998 578889999988888888877766643
No 179
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.50 E-value=0.00027 Score=67.03 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=71.9
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP 234 (346)
+++|+|.|.||..+|..|...|.+|..++| ...... .. ..++.+.... ...........+.++....+|+|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~-~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKA-LR-ERGLVIRSDH-GDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHH-HH-hCCeEEEeCC-CeEEecceeecCHHHccCCCCEEEEEec
Confidence 699999999999999999988999999998 322100 00 0011000000 0000000012456666789999999999
Q ss_pred CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081 235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 281 (346)
Q Consensus 235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 281 (346)
. ..+..++ +..-...+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 78 ~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 78 A-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred c-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 4 3444333 2222335678888877665 44567777777665654
No 180
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.49 E-value=0.00031 Score=65.97 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=72.2
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHH-hhcC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEF-ASKA 226 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~el-l~~a 226 (346)
...+++++|+|.|.+|++++..+...|++|.+++|+..+...-.. .. ...+ ...++++. +.++
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~-------------~~-~~~~~~~~~~~~~~~~~~~ 179 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE-------------RF-QRYGEIQAFSMDELPLHRV 179 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------------HH-hhcCceEEechhhhcccCc
Confidence 356889999999999999999999999999999987543211000 00 0000 11223332 3579
Q ss_pred CEEEEeecCCc--cccC-CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081 227 DVVVCCLSLNK--QTAG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 280 (346)
Q Consensus 227 DiV~~~lPlt~--~T~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i 280 (346)
|+|+.++|... .... .++ .+.++++.+++++.-.+.- + .|++..++..+
T Consensus 180 DivInatp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~ 231 (270)
T TIGR00507 180 DLIINATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGT 231 (270)
T ss_pred cEEEECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCC
Confidence 99999999752 2211 233 3447899999999877653 3 57776665543
No 181
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.49 E-value=0.00021 Score=66.69 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=61.7
Q ss_pred CCeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 228 (346)
..++||||+|+||.++++.+..-| -++++++++.... .. ....+..+++.+||+
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------------------~~----~~~~~~~~~~~~~D~ 60 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------------------PF----VYLQSNEELAKTCDI 60 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------------------Ce----EEeCChHHHHHhCCE
Confidence 458999999999999999988655 2488888754321 00 012356677889999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
|++++|. ..++.++.. .-..++++ .+|.+.-| +..+.+-+.+.
T Consensus 61 Vilavkp-~~~~~vl~~-i~~~l~~~-~iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 61 IVLAVKP-DLAGKVLLE-IKPYLGSK-LLISICGG--LNLKTLEEMVG 103 (260)
T ss_pred EEEEeCH-HHHHHHHHH-HHhhccCC-EEEEEeCC--ccHHHHHHHcC
Confidence 9999984 445555432 22234444 45555444 34555555554
No 182
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.46 E-value=0.00064 Score=64.52 Aligned_cols=80 Identities=18% Similarity=0.370 Sum_probs=64.1
Q ss_pred ccccCCCeEEEEecCH-HHHHHHHHHccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (346)
+.++.||++.|||-+. +|+.+|.+|... ++.|+..... ..++.+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~~l~~~ 201 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------------------------------TDDLAAK 201 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------------------------------CCCHHHH
Confidence 4579999999999987 599999999755 7888876421 1367888
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
.++||+|++++-. .+++..++ .|+|+++||++--.
T Consensus 202 ~~~ADIvIsAvGk----p~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 202 TRRADIVVAAAGV----PELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred HhhCCEEEEccCC----cCccCHHH---cCCCCEEEEccccc
Confidence 9999999998853 34888877 58999999998544
No 183
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.41 E-value=0.0024 Score=58.48 Aligned_cols=125 Identities=19% Similarity=0.169 Sum_probs=72.5
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccc----cccccchhhhccccccccccccCCcCCHHHHh-
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ----VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA- 223 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell- 223 (346)
.++.|+++.|.|+|++|+.+|+.|..+|++|+++..+...... +......+..+.+-+..... ....+.++++
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~--~~~~~~~~i~~ 104 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPG--AERITNEELLE 104 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCC--ceecCCcccee
Confidence 6789999999999999999999999999999955332111000 00000000000000000000 0011222322
Q ss_pred hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081 224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 283 (346)
Q Consensus 224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga 283 (346)
.+||+++-|.+. +.|+.+...+++ =.+++--+-+++ . ..-.+.|+++.|..+
T Consensus 105 ~~~Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~ 156 (227)
T cd01076 105 LDCDILIPAALE-----NQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLVV 156 (227)
T ss_pred ecccEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEE
Confidence 478999887643 467888888887 334555556665 4 556688888877643
No 184
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.37 E-value=0.00083 Score=63.51 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP 234 (346)
+++|||.|.||..+|..|...|.+|..++|+...... ... .++.+.++ ..........+..++ +.+|+|++++|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~-~~~-~g~~~~~~---~~~~~~~~~~~~~~~-~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDA-LNE-NGLRLEDG---EITVPVLAADDPAEL-GPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHH-HHH-cCCcccCC---ceeecccCCCChhHc-CCCCEEEEecc
Confidence 6999999999999999999889999999985432110 000 01100000 000000112445555 89999999999
Q ss_pred CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEE--EecCCCCC
Q 019081 235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG--IDVAWTEP 292 (346)
Q Consensus 235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~--lDV~~~EP 292 (346)
.. ++..++. ..-..+.++..+|...-| +-.++.+.+.+...++.+.. ..++..+|
T Consensus 76 ~~-~~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p 132 (304)
T PRK06522 76 AY-QLPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP 132 (304)
T ss_pred cc-cHHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence 43 4433322 222345677888887776 33456666666655554322 23344455
No 185
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.36 E-value=0.00059 Score=69.29 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=51.2
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (346)
+.++.+++++|+|.|.+|++++..+...|++|++++|+..+..... ...........++.+ +.++|
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la-------------~~~~~~~~~~~~~~~-l~~~D 392 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALA-------------SRCQGKAFPLESLPE-LHRID 392 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-------------HHhccceechhHhcc-cCCCC
Confidence 4567899999999999999999999999999999998653311000 000000001122222 56899
Q ss_pred EEEEeecCCc
Q 019081 228 VVVCCLSLNK 237 (346)
Q Consensus 228 iV~~~lPlt~ 237 (346)
+|++++|...
T Consensus 393 iVInatP~g~ 402 (477)
T PRK09310 393 IIINCLPPSV 402 (477)
T ss_pred EEEEcCCCCC
Confidence 9999999753
No 186
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00041 Score=67.03 Aligned_cols=67 Identities=28% Similarity=0.311 Sum_probs=48.3
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC 231 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~ 231 (346)
++||||||-|..|+.++..++.+|++|++.|+.......... +....... ....+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va------------~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVA------------DRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcc------------cceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999987654211110 01111111 23468899999999975
No 187
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.29 E-value=0.014 Score=54.25 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=74.5
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc----ccc---chhhhcccc-cccccccc--CCcC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS----CQS---SALAVKNGI-IDDLVDEK--GCHE 217 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~----~~~---~~~~~~~~~-~~~~~~~~--~~~~ 217 (346)
+.++.|+||.|-|+|++|+.+|+.|..+|++|+++..+......+. ... ..+.-..+- +......+ ....
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 4679999999999999999999999999999995432111100000 000 000000000 00010000 0112
Q ss_pred CHHHHh-hcCCEEEEeecCCccccCCCCHHHHccCC--CCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081 218 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK--KGSLLVNIARGGLLDYEAIAHYLECGHLGG 282 (346)
Q Consensus 218 ~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk--~gailIN~sRg~~vd~~aL~~aL~~g~i~g 282 (346)
+-++++ .+|||++-| .+.+.|+.+...+++ +=.+++-.+-|++-. +-.+.|+++.|.-
T Consensus 113 ~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~v 173 (254)
T cd05313 113 EGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVLF 173 (254)
T ss_pred CCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcEE
Confidence 233333 579999887 467799999888885 334566667777644 4457788777653
No 188
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.28 E-value=0.00046 Score=65.47 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=34.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~ 188 (346)
.|+.+||+|+|.+|..-.+.+++||++|+++|++.++
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence 8999999999999999999999999999999987643
No 189
>PLN02477 glutamate dehydrogenase
Probab=97.25 E-value=0.014 Score=57.94 Aligned_cols=126 Identities=23% Similarity=0.266 Sum_probs=75.2
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEE-cCCCccc---cccccccchhhhccccccccccccCCcCCHHHH-
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASH---SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF- 222 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~-d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el- 222 (346)
+.+|.|++|.|.|+|++|+.+|+.|...|++|+++ |.+..-. --+......+...++.+..+.. ....+.+++
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~--a~~i~~~e~l 278 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPG--GDPIDPDDIL 278 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhcccc--ceEecCccce
Confidence 45799999999999999999999999999999954 4431100 0000000000000110111100 011122233
Q ss_pred hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081 223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 283 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga 283 (346)
..+|||++-|. ..+.|+++...++| =.+++--+-+++ . .+--+.|++..|..+
T Consensus 279 ~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t-~ea~~~L~~rGI~~~ 331 (410)
T PLN02477 279 VEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-D-PEADEILRKKGVVVL 331 (410)
T ss_pred eccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-C-HHHHHHHHHCCcEEE
Confidence 35799988764 45689999888875 456777788887 3 334588888877543
No 190
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.25 E-value=0.00086 Score=63.53 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=62.7
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccc-cccCCcCCHHHHhhcCC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKAD 227 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aD 227 (346)
.+.++++.|+|.|.+|++++..|...|+ +|+++||+..+...-... +. . ... .......++.+.++++|
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~---l~--~----~~~~~~~~~~~~~~~~~~~aD 194 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE---LN--A----RFPAARATAGSDLAAALAAAD 194 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH---HH--h----hCCCeEEEeccchHhhhCCCC
Confidence 4678999999999999999999999998 799999976442111000 00 0 000 00001234566778899
Q ss_pred EEEEeecCCcc-ccC-CCCHHHHccCCCCcEEEEcCCCC
Q 019081 228 VVVCCLSLNKQ-TAG-IVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 228 iV~~~lPlt~~-T~~-li~~~~l~~mk~gailIN~sRg~ 264 (346)
+|+.+.|.--. +.. .++. +.++++.+++++.-.+
T Consensus 195 iVInaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P 230 (284)
T PRK12549 195 GLVHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFP 230 (284)
T ss_pred EEEECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence 99999986421 111 2232 2345666666665444
No 191
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.23 E-value=0.00073 Score=65.23 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
..++++|||.|.+|+..++.+. .++. +|.+|+|+..+....... + +. ...-......++++.+++||+|
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~---~--~~----~~g~~v~~~~~~~~av~~aDiV 198 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQ---L--SS----LLGIDVTAATDPRAAMSGADII 198 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHH---H--Hh----hcCceEEEeCCHHHHhccCCEE
Confidence 3579999999999999999886 4675 699999986542111100 0 00 0000001246789999999999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
+.+.|.+ ..+|..+. +|+|+.+..++
T Consensus 199 vtaT~s~---~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 199 VTTTPSE---TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred EEecCCC---CcEecHHH---cCCCcEEEeeC
Confidence 9998754 35777665 68999888775
No 192
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.20 E-value=0.00075 Score=65.13 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=62.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhcccccccccccc----CCcCCHHHHhhc
Q 019081 152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK----GCHEDIFEFASK 225 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ell~~ 225 (346)
..++++|||.|.+|+..++.+. ..++ +|.+++|+..+...... .+.... ....++++++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 192 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQ-------------EIQSKFNTEIYVVNSADEAIEE 192 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHH-------------HHHHhcCCcEEEeCCHHHHHhc
Confidence 4679999999999999887654 4566 68999987654211110 000011 124678999999
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
||+|+++.|.. ..++. + .+|+|+.++.++.
T Consensus 193 aDiVi~aT~s~---~p~i~-~---~l~~G~hV~~iGs 222 (325)
T PRK08618 193 ADIIVTVTNAK---TPVFS-E---KLKKGVHINAVGS 222 (325)
T ss_pred CCEEEEccCCC---CcchH-H---hcCCCcEEEecCC
Confidence 99999998854 34665 4 4699999988854
No 193
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.16 E-value=0.0042 Score=62.19 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=72.9
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhh---------c---cccccccccccC-
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV---------K---NGIIDDLVDEKG- 214 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~- 214 (346)
|.+|.|++|.|.|+|++|...|+.|..+|++|+++..+......+ .++.+ + ++-+.......+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~----~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga 298 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDP----DGIDREKLDYIMELKNLYRGRIREYAEKYGC 298 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECC----CCCCHHHHHHHHHHHhhcCCchhhhHhhcCC
Confidence 468999999999999999999999999999999854322110000 00100 0 010111111101
Q ss_pred CcCCHHHHh-hcCCEEEEeecCCccccCCCCHHHHccCCC-CcEEEEc-CCCCCCCHHHHHHHHHhCCCe
Q 019081 215 CHEDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKK-GSLLVNI-ARGGLLDYEAIAHYLECGHLG 281 (346)
Q Consensus 215 ~~~~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~-gailIN~-sRg~~vd~~aL~~aL~~g~i~ 281 (346)
...+-++++ ..|||++-|. +.+.|+.+...+++. |..+|-. +-| .+..++. +.|.+..|.
T Consensus 299 ~~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~ 361 (444)
T PRK14031 299 KYVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL 361 (444)
T ss_pred EEcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence 112333443 5689888754 567899998888874 5545555 555 5555554 555555553
No 194
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.15 E-value=0.0038 Score=62.57 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=74.8
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEE-cCCCccc-c--ccccccchhhhcc-ccccccccccC-CcCCHHH
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASH-S--QVSCQSSALAVKN-GIIDDLVDEKG-CHEDIFE 221 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~-d~~~~~~-~--~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~e 221 (346)
+.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+..-. + -+......+.-.+ +-+..+....+ ...+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45789999999999999999999999999999987 5322100 0 0000000000000 00111111001 1123344
Q ss_pred Hh-hcCCEEEEeecCCccccCCCCHHHHccCC-CC-cEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081 222 FA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK-KG-SLLVNIARGGLLDYEAIAHYLECGHLGG 282 (346)
Q Consensus 222 ll-~~aDiV~~~lPlt~~T~~li~~~~l~~mk-~g-ailIN~sRg~~vd~~aL~~aL~~g~i~g 282 (346)
++ .+|||++-|.. .+.|+.+...+++ ++ .+++-.+-|++ +.+-.+.|.++.|.-
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~~ 363 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVLF 363 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcEE
Confidence 44 37999988764 4578888776663 23 45666777887 444557788877653
No 195
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.14 E-value=0.0049 Score=56.10 Aligned_cols=122 Identities=21% Similarity=0.160 Sum_probs=69.1
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEE-EcCCCcccccc---ccccchhhhccccccccccccCCcCCHHHHh-
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQV---SCQSSALAVKNGIIDDLVDEKGCHEDIFEFA- 223 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell- 223 (346)
.+|.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+..- ..+ ......+....+-+.. ... ....+-++++
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i-~~~Gld~~~l~~~~~~~~~~~~-~~~-~~~~~~~~l~~ 95 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYI-YDPGITTEELINYAVALGGSAR-VKV-QDYFPGEAILG 95 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcE-ECCCCCHHHHHHHHHhhCCccc-cCc-ccccCccccee
Confidence 578999999999999999999999999997665 4543300 000 0000000000000000 000 0001112222
Q ss_pred hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081 224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 281 (346)
Q Consensus 224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 281 (346)
.+||+++-|.+.+ .|+.+....++ =.+++--+-+++-+ .-.+.|++..+.
T Consensus 96 ~~~DVlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 96 LDVDIFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred ccccEEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 4799999887643 78888887777 34555666777654 345666666554
No 196
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.14 E-value=0.0012 Score=70.37 Aligned_cols=132 Identities=18% Similarity=0.151 Sum_probs=82.4
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc---cccchhhhccccccc-----cccccCCcCCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (346)
++|+|||.|.||..+|..+...|++|+.||++........ .......+..+.+.. .........++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 6899999999999999999989999999998764321100 000000011110000 00000112456 44799
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 289 (346)
||+|+=++|-..+.+.-+-++.-+.++++++|...+ +-+.-.+|.++++. +=.-.++-.|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-CccEEEEecCC
Confidence 999999999888877777777777789998875443 33556667777653 22234555553
No 197
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.11 E-value=0.00066 Score=65.22 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=55.1
Q ss_pred CeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcCC
Q 019081 154 KTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKAD 227 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aD 227 (346)
+++||||.|..|+.-++.+.. ++. +|.+|+|+..+...... .... .+ ...+.++++++||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~-------------~~~~-~~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAA-------------RLRD-LGVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHH-------------HHHC-CCTCEEEESSHHHHHTTSS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHH-------------hhcc-ccccceeccchhhhcccCC
Confidence 489999999999998887753 555 69999998654211111 1111 11 2468999999999
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 265 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~ 265 (346)
+|+.+.|.+..+ -+++.+. +|+|+.++.++....
T Consensus 195 ii~taT~s~~~~-P~~~~~~---l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 195 IIVTATPSTTPA-PVFDAEW---LKPGTHINAIGSYTP 228 (313)
T ss_dssp EEEE----SSEE-ESB-GGG---S-TT-EEEE-S-SST
T ss_pred EEEEccCCCCCC-ccccHHH---cCCCcEEEEecCCCC
Confidence 999998766533 6777764 689999999986543
No 198
>PRK06046 alanine dehydrogenase; Validated
Probab=97.09 E-value=0.001 Score=64.19 Aligned_cols=89 Identities=24% Similarity=0.302 Sum_probs=61.3
Q ss_pred CCeEEEEecCHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcC
Q 019081 153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA 226 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a 226 (346)
-++|||||+|.+|+..++.+. ..+. +|.++||+..+...... ......+ ...+++++++ +
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~l~-a 194 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVE-------------RMSSVVGCDVTVAEDIEEACD-C 194 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHH-------------HHHhhcCceEEEeCCHHHHhh-C
Confidence 469999999999999998776 3465 47788987644211110 0000001 1357889887 9
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
|+|++++|.+ ..+++.+. +|+|+.+..++
T Consensus 195 DiVv~aTps~---~P~~~~~~---l~~g~hV~~iG 223 (326)
T PRK06046 195 DILVTTTPSR---KPVVKAEW---IKEGTHINAIG 223 (326)
T ss_pred CEEEEecCCC---CcEecHHH---cCCCCEEEecC
Confidence 9999998854 46777775 58999888886
No 199
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.06 E-value=0.00047 Score=55.13 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=57.0
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
.+.|++|.|||.|.+|..-++.|...|++|+++.+..... ... ..+. ...+++-+..+|+|
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~-~~~-------------i~~~-----~~~~~~~l~~~~lV 64 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFS-EGL-------------IQLI-----RREFEEDLDGADLV 64 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHH-HTS-------------CEEE-----ESS-GGGCTTESEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhh-hhH-------------HHHH-----hhhHHHHHhhheEE
Confidence 5889999999999999999999999999999998763100 000 0111 12334557789988
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
+.+.+. ++ +++......+.--+++|++
T Consensus 65 ~~at~d-~~----~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 65 FAATDD-PE----LNEAIYADARARGILVNVV 91 (103)
T ss_dssp EE-SS--HH----HHHHHHHHHHHTTSEEEET
T ss_pred EecCCC-HH----HHHHHHHHHhhCCEEEEEC
Confidence 887653 22 4555556666566788874
No 200
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.06 E-value=0.0012 Score=63.90 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=60.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
..++++|||.|.+|+..+..+.. .+. +|.+|+|+..+...-... + .+ ...-......++++++++||+|
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~---~--~~----~~g~~v~~~~d~~~al~~aDiV 201 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAAD---L--RA----ELGIPVTVARDVHEAVAGADII 201 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH---H--hh----ccCceEEEeCCHHHHHccCCEE
Confidence 35799999999999998887763 554 799999876542111000 0 00 0000001246889999999999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~ 260 (346)
+.+.|.. ..++..+. +|+|+.+..+
T Consensus 202 i~aT~s~---~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 202 VTTTPSE---EPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred EEeeCCC---CcEecHHH---cCCCceEEee
Confidence 9998754 35776655 5778766654
No 201
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.05 E-value=0.0014 Score=61.19 Aligned_cols=127 Identities=22% Similarity=0.311 Sum_probs=65.6
Q ss_pred HHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCH
Q 019081 168 LAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNK 245 (346)
Q Consensus 168 vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~ 245 (346)
+|+.|+..| .+|+++|++...... +++.+.++. ...+ .+.+++||+|++|+|.. .+..++ +
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~--------a~~~g~~~~------~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~ 63 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEA--------ALELGIIDE------ASTD-IEAVEDADLVVLAVPVS-AIEDVL-E 63 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHH--------HHHTTSSSE------EESH-HHHGGCCSEEEE-S-HH-HHHHHH-H
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHH--------HHHCCCeee------ccCC-HhHhcCCCEEEEcCCHH-HHHHHH-H
Confidence 355666555 899999987643211 111111111 1123 57889999999999953 344443 3
Q ss_pred HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe-cCCCC---CCCCCCCCCCCCceEEccCCC
Q 019081 246 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTE---PFDPNDPILKFKNVLITPHVG 312 (346)
Q Consensus 246 ~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~E---Pl~~~~pL~~~~nviiTPH~a 312 (346)
+....+++|+++++++.-..--.+++.+.+.. .....+.= -|.+| |..++..|+.-.++++||+-.
T Consensus 64 ~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 64 EIAPYLKPGAIVTDVGSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp HHHCGS-TTSEEEE--S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred HhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 34456899999999976554334444444441 11111111 12222 222345788888999999865
No 202
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.015 Score=56.86 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=111.9
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc--cccCCcCCHHHH---hhcCCE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEF---ASKADV 228 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~el---l~~aDi 228 (346)
..+|+||+|-||+.+|......|++|.+|||+..+...... +.. .......+++|+ |+.---
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~-------------~~~~~k~i~~~~sieefV~~Le~PRk 70 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLA-------------ERAKGKNIVPAYSIEEFVASLEKPRK 70 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHH-------------hCccCCCccccCcHHHHHHHhcCCce
Confidence 46999999999999999999999999999998755311110 011 011134566665 466777
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEc
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT 308 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiT 308 (346)
|++++-.-.....+| ++.+-.|-+|-++|+-+-..--|+..-.++|.+.-|...+.-|-..|-= -+.. |- +
T Consensus 71 I~lMVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeG----A~~G-PS--i- 141 (473)
T COG0362 71 ILLMVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEG----ARHG-PS--I- 141 (473)
T ss_pred EEEEEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccc----cccC-CC--c-
Confidence 888875432112333 3566678899999999999999999999999999999999999877732 1111 11 1
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 019081 309 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 340 (346)
Q Consensus 309 PH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~ 340 (346)
+-|.+.++++....++ +.|.+-..|+|..
T Consensus 142 --MpGG~~eay~~v~pil-~~IaAk~~g~pCc 170 (473)
T COG0362 142 --MPGGQKEAYELVAPIL-TKIAAKVDGEPCC 170 (473)
T ss_pred --CCCCCHHHHHHHHHHH-HHHHhhcCCCCce
Confidence 2277889998876554 4455555577653
No 203
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.03 E-value=0.00031 Score=63.20 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=38.1
Q ss_pred ccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 142 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
.|+......|.+++|.|+|+|.+|..+|+.|...|. ++..+|+..
T Consensus 10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 355444567999999999999999999999999998 799998763
No 204
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.00 E-value=0.0019 Score=61.84 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=75.7
Q ss_pred CeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~ 231 (346)
++|+|||.|.+|..+|..+...|. +|+.+|........... .+. +........ ......++++ +++||+|++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~---d~~--~~~~~~~~~~~i~~t~d~~~-~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKAL---DMY--EASPVGGFDTKVTGTNNYAD-TANSDIVVI 75 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHH---hhh--hhhhccCCCcEEEecCCHHH-hCCCCEEEE
Confidence 589999999999999999887665 89999985432110000 000 000000000 0101256766 789999999
Q ss_pred eecCCccccCC-------CCH-------HHHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEEE--Ee
Q 019081 232 CLSLNKQTAGI-------VNK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG--ID 286 (346)
Q Consensus 232 ~lPlt~~T~~l-------i~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~--lD 286 (346)
+++ ++...+. .|. +.+....+++++|+++-.-=+-...+.+. +...++-|.+ ||
T Consensus 76 tag-~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 76 TAG-LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred cCC-CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 988 3333332 121 22344457899999976555555556555 5566777775 77
No 205
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0022 Score=61.93 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=67.1
Q ss_pred CCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
-++++|||.|..++.-++.++. ++. +|.+|+|++........... ..+........+.+++++.||+|+
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~---------~~~~~~v~a~~s~~~av~~aDiIv 200 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLR---------KRGGEAVGAADSAEEAVEGADIVV 200 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHH---------hhcCccceeccCHHHHhhcCCEEE
Confidence 3589999999999999988764 565 69999998765322111000 011111123578899999999999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
.+.|.++ -++..+.+ |||+.+..++-
T Consensus 201 t~T~s~~---Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 201 TATPSTE---PVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred EecCCCC---CeecHhhc---CCCcEEEecCC
Confidence 9987655 68887774 79999999983
No 206
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.98 E-value=0.0021 Score=61.60 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=71.0
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccc--cccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ--VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~ 231 (346)
++|+|+|.|.-|.++|+.+...|.+|..|.|+.....+ ..+... ...+ ++ .+........++.++++.||+|++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~-~yLp-~i--~lp~~l~at~Dl~~a~~~ad~iv~ 77 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENP-KYLP-GI--LLPPNLKATTDLAEALDGADIIVI 77 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCc-cccC-Cc--cCCcccccccCHHHHHhcCCEEEE
Confidence 58999999999999999999999999998875421100 000000 0000 00 011111235789999999999999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHH
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 271 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL 271 (346)
.+|. ...+.++..- -..+++++.+|+++-|=-.+.-.+
T Consensus 78 avPs-~~~r~v~~~l-~~~l~~~~~iv~~sKGie~~t~~l 115 (329)
T COG0240 78 AVPS-QALREVLRQL-KPLLLKDAIIVSATKGLEPETGRL 115 (329)
T ss_pred ECCh-HHHHHHHHHH-hhhccCCCeEEEEeccccCCCcch
Confidence 9994 3433333222 134679999999997755544333
No 207
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.97 E-value=0.0015 Score=61.85 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=50.4
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 228 (346)
.+.|+++.|||.|.+|++++..|...|+ +|++++|+..+...-... +. .. ..........++.+.+.++|+
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~---~~--~~---~~~~~~~~~~~~~~~~~~~Di 193 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL---GV--QV---GVITRLEGDSGGLAIEKAAEV 193 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH---hh--hc---CcceeccchhhhhhcccCCCE
Confidence 4678999999999999999999999998 699999976432110000 00 00 000000001234455678999
Q ss_pred EEEeecCC
Q 019081 229 VVCCLSLN 236 (346)
Q Consensus 229 V~~~lPlt 236 (346)
|+.++|..
T Consensus 194 VInaTp~g 201 (282)
T TIGR01809 194 LVSTVPAD 201 (282)
T ss_pred EEECCCCC
Confidence 99998864
No 208
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.93 E-value=0.0015 Score=63.12 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=34.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~ 188 (346)
.|++|+|+|+|..|....+.++++|++|+++|++..+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K 202 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK 202 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 4889999999999999999999999999999998654
No 209
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.91 E-value=0.00094 Score=64.84 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=37.1
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
|+......|.+++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 44333467999999999999999999999999998 788898764
No 210
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.90 E-value=0.0026 Score=58.96 Aligned_cols=123 Identities=25% Similarity=0.296 Sum_probs=72.4
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEE--------cCCCccccccccccchhhhcccc-ccccccc---cCCc
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT--------KRSWASHSQVSCQSSALAVKNGI-IDDLVDE---KGCH 216 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~--------d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~ 216 (346)
.++.|+++.|-|+|++|+.+|+.|...|++|+++ |+..-.. .....+....+. +...... ....
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~----~~l~~~~~~~~~~v~~~~~~~~~~~~~ 103 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDV----EELLRIKEERGSRVDDYPLESPDGAEY 103 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHH----HHHHHHHHHHSSHSTTGTHTCSSTSEE
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchH----HHHHHHHHHhCCcccccccccccceeE
Confidence 4699999999999999999999999999998876 3321110 000000000000 0000000 0000
Q ss_pred CCHH-HHh-hcCCEEEEeecCCccccCCCCHHHHc-cCCCCcEEEEc-CCCCCCCHHHHHHHHHhCCCeE
Q 019081 217 EDIF-EFA-SKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNI-ARGGLLDYEAIAHYLECGHLGG 282 (346)
Q Consensus 217 ~~l~-ell-~~aDiV~~~lPlt~~T~~li~~~~l~-~mk~gailIN~-sRg~~vd~~aL~~aL~~g~i~g 282 (346)
.+-+ +++ .+|||++.|. ..+.|+.+... .+|+|+-+|-- +-+++ ..++.- .|++..|.-
T Consensus 104 ~~~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~v 166 (244)
T PF00208_consen 104 IPNDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGILV 166 (244)
T ss_dssp ECHHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-EE
T ss_pred eccccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCEE
Confidence 1221 455 6899999983 34578888888 88877665555 55555 455554 888877753
No 211
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.88 E-value=0.001 Score=59.79 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=35.5
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.-+|.|+++.|||.|.+|...++.|...|++|+++++..
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 457999999999999999999999999999999998754
No 212
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.88 E-value=0.0025 Score=61.32 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=56.7
Q ss_pred CeEEEEecCHHHHHHHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~ 231 (346)
-+|||||+|+||+.+++.+... ++++++ +|++..... ..... .....+.++++.+.|+|++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~----------------~~~~~-v~~~~d~~e~l~~iDVViI 66 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETL----------------DTETP-VYAVADDEKHLDDVDVLIL 66 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHH----------------hhcCC-ccccCCHHHhccCCCEEEE
Confidence 5899999999999999988754 899876 577632110 00001 1123467777889999999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
|.|.... -......++.|.=+|++.
T Consensus 67 ctPs~th-----~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 67 CMGSATD-----IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred cCCCccC-----HHHHHHHHHcCCCEEECC
Confidence 9885422 133344467777777774
No 213
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.88 E-value=0.0022 Score=62.41 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=63.6
Q ss_pred eEEEEecCHHHHHHHHHHccCC--------CEEEEEcCCC---ccccccccccchhhhccccccc--cccccCCcCCHHH
Q 019081 155 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSW---ASHSQVSCQSSALAVKNGIIDD--LVDEKGCHEDIFE 221 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G--------~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~e 221 (346)
+|+|||.|+.|.++|..+..-| .+|..|.+.. ....... .... +...+.+.. +.+......++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~-in~~-~~n~~ylpgi~Lp~~i~at~dl~e 78 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEI-INTT-HENVKYLPGIKLPANLVAVPDLVE 78 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHH-HHhc-CCCccccCCCcCCCCeEEECCHHH
Confidence 5899999999999999997656 9999998732 0000000 0000 000000000 0000001358999
Q ss_pred HhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081 222 FASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 265 (346)
Q Consensus 222 ll~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~ 265 (346)
+++.||+|++++|. ...+.++ .+.-..++++..+|+++-|=-
T Consensus 79 al~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 79 AAKGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred HHhcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcc
Confidence 99999999999994 3434433 222234688899999987743
No 214
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.88 E-value=0.0046 Score=60.47 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=95.8
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC------CcCCHHHHhhcCC
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIFEFASKAD 227 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ell~~aD 227 (346)
.++.|+|.|-+|...+..+..+|++|+.+|....+-..-.. ...+.-+.-+.++..+.. ...+.++.++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~--g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNK--GISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhC--CCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 37899999999999999999999999999986543110000 000000000112222111 2368889999999
Q ss_pred EEEEeecCCccccCCCCH--------HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe-cCCCCCCCCCCC
Q 019081 228 VVVCCLSLNKQTAGIVNK--------SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTEPFDPNDP 298 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~--------~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EPl~~~~p 298 (346)
++++++|-.+...|-+|- +..+.++..+++|+=|.-.+=..+.+.+-+.+..-+. -++ ++.+|=|...+-
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~A 157 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSA 157 (414)
T ss_pred EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcch
Confidence 999999955544565553 3455677779999999999888888888776655332 233 245554554443
Q ss_pred CC---CCCceEE
Q 019081 299 IL---KFKNVLI 307 (346)
Q Consensus 299 L~---~~~nvii 307 (346)
+. ..+++++
T Consensus 158 v~D~~~PdRIVi 169 (414)
T COG1004 158 VYDFLYPDRIVI 169 (414)
T ss_pred hhhccCCCeEEE
Confidence 33 3456664
No 215
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.87 E-value=0.0044 Score=57.47 Aligned_cols=89 Identities=18% Similarity=0.290 Sum_probs=58.0
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l 233 (346)
.++-|+|.|.+++++++.++.+|++|+++|++..-. . . ...+.++.+....
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~---------------------~----~----~~~~~~~~~~~~~ 151 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF---------------------P----E----DLPDGVATLVTDE 151 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc---------------------c----c----cCCCCceEEecCC
Confidence 389999999999999999999999999999753210 0 0 0012233222211
Q ss_pred cCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081 234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 281 (346)
Q Consensus 234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 281 (346)
| .+.+..+.++.++|=+.|+.-.|.+.|..+|++....
T Consensus 152 ~----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~ 189 (246)
T TIGR02964 152 P----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDFA 189 (246)
T ss_pred H----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence 1 2233334566677777788888888888888544443
No 216
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.87 E-value=0.0022 Score=68.44 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=83.0
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc---cccchhhhccccccc-----cccccCCcCCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~ 225 (346)
++|+|||.|.||..+|..+...|++|+.+|++........ .......++.+.+.. .........+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999988999999998764321100 000000011110000 000011124564 5799
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 289 (346)
||+|+=++|-+.+.+.-+-++.=+.++++++|... -+-++-.+|.++++.- =.-.++..|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~p-~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSRP-EKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCCc-cceEEEeccC
Confidence 99999999988887777777777789999987533 2335667777776542 2235666664
No 217
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.86 E-value=0.0029 Score=62.39 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=65.5
Q ss_pred CCeEEEEecCHHHHHHHHHHcc-CC-C-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 153 GKTVFILGFGNIGVELAKRLRP-FG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~-~G-~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
-++++|||.|..++.-++.+.. +. . +|.+|+|+..+........ ... +... .......+.++++++||+|
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~-----~~~-~~~~-~~v~~~~s~~eav~~ADIV 227 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWV-----AET-YPQI-TNVEVVDSIEEVVRGSDIV 227 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH-----HHh-cCCC-ceEEEeCCHHHHHcCCCEE
Confidence 4699999999999999888765 42 4 7999999875432111000 000 0000 0011236899999999999
Q ss_pred EEeecCCc---cccCCCCHHHHccCCCCcEEEEcCC
Q 019081 230 VCCLSLNK---QTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 230 ~~~lPlt~---~T~~li~~~~l~~mk~gailIN~sR 262 (346)
+.+.+.+. .+..+++.+. +|||+.++.++.
T Consensus 228 vtaT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~ 260 (379)
T PRK06199 228 TYCNSGETGDPSTYPYVKREW---VKPGAFLLMPAA 260 (379)
T ss_pred EEccCCCCCCCCcCcEecHHH---cCCCcEEecCCc
Confidence 99987543 3457787775 579998876654
No 218
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.84 E-value=0.003 Score=60.74 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=63.3
Q ss_pred CCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
-++++|+|.|..++.-++.+.. +.. +|.+|+|+..+........ ....-......+.++++++||+|+
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~----------~~~~~~v~~~~~~~~av~~ADIV~ 197 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA----------QALGFAVNTTLDAAEVAHAANLIV 197 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH----------HhcCCcEEEECCHHHHhcCCCEEE
Confidence 4699999999999998887653 333 6999999876532111000 000000002367899999999999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
.+.| .+..+++.+. +|||+.++.++
T Consensus 198 taT~---s~~P~~~~~~---l~~G~hi~~iG 222 (315)
T PRK06823 198 TTTP---SREPLLQAED---IQPGTHITAVG 222 (315)
T ss_pred EecC---CCCceeCHHH---cCCCcEEEecC
Confidence 9876 4456887775 58999999887
No 219
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.83 E-value=0.0028 Score=67.51 Aligned_cols=131 Identities=14% Similarity=0.004 Sum_probs=81.8
Q ss_pred CeEEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCcccccccc---ccchhhhcccccccc-c----cccCCcCCHHHHhh
Q 019081 154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDDL-V----DEKGCHEDIFEFAS 224 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~-~----~~~~~~~~l~ell~ 224 (346)
++|+|||.|.||..+|..+. ..|++|+.||++......... ......+..+.+... . .......++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 779999999987543111000 000000001100000 0 000012455 4579
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecC
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA 288 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~ 288 (346)
+||+|+=++|-+.+.+.-+-++.=+.++|+++|... -+-+.-..|.+.++. .=.-+++-.|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~ig~Hff 449 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAAR-PEQVIGLHYF 449 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCc-ccceEEEecC
Confidence 999999999988887776667766778999988654 344566677777643 2223556666
No 220
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.83 E-value=0.003 Score=67.10 Aligned_cols=131 Identities=15% Similarity=0.038 Sum_probs=80.4
Q ss_pred CeEEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCccccccccc---cchhhhcccccccc-c----cccCCcCCHHHHhh
Q 019081 154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDDL-V----DEKGCHEDIFEFAS 224 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~-~----~~~~~~~~l~ell~ 224 (346)
++|+|||.|.||..+|..+. ..|++|+.||++.......... .....++.+.+... . .......++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999887 4799999999875421110000 00000011100000 0 000012455 4579
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeEEEEecCC
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGGLGIDVAW 289 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~ 289 (346)
+||+|+=++|-..+.+.-+-++.-+.++++++|.... +-+.-.+|.++++. +++ .++-.|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~p~r~--~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASRPENV--IGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCCcccE--EEEecCC
Confidence 9999999999888877777677767789998875443 33555667777643 334 4566653
No 221
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.83 E-value=0.0064 Score=56.47 Aligned_cols=105 Identities=22% Similarity=0.166 Sum_probs=68.9
Q ss_pred CccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh
Q 019081 147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA 223 (346)
Q Consensus 147 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell 223 (346)
.|.+|+..||+|+|+ |.||..+|+.+.+.+.+....-|......... .. .+....+ ...+++..+
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~-----l~-------~l~e~~~~~~i~s~d~~~ 228 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQR-----LT-------LLQEELGRGKIMSLDYAL 228 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhh-----hh-------hcccccCCCeeeeccccc
Confidence 478999999999997 99999999999998887555443222111100 00 1111112 234666666
Q ss_pred hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081 224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY 268 (346)
Q Consensus 224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~ 268 (346)
.+.|+++-.. +..+-..|+.+. +|||+++|+-++..=||+
T Consensus 229 ~~e~i~v~vA--s~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 229 PQEDILVWVA--SMPKGVEIFPQH---LKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred cccceEEEEe--ecCCCceechhh---ccCCeEEEcCCcCccccc
Confidence 6667665544 234455777776 699999999998887666
No 222
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.83 E-value=0.013 Score=56.18 Aligned_cols=121 Identities=20% Similarity=0.151 Sum_probs=72.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccCCcCCHHHHhhcCCEEEEe
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
.+++|||.|.||..+|.+|...|.+|.++.|+.... . ...++.+.. ..... ........+. +.+..+|+|+++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~---~-~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEA---V-RENGLQVDS-VHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHH---H-HhCCeEEEe-CCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 589999999999999999999999999998864211 0 000100000 00000 0000001222 346789999999
Q ss_pred ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 283 (346)
Q Consensus 233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga 283 (346)
+|.. ++...+ ...-..++++..++...-| +-.++.|.+.+...++.++
T Consensus 80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 9954 333322 1222335678888877555 4567778778877776554
No 223
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.81 E-value=0.0029 Score=57.34 Aligned_cols=93 Identities=26% Similarity=0.321 Sum_probs=59.9
Q ss_pred eEEEEecCHHHHHHHHHHcc--CCCE-EEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081 155 TVFILGFGNIGVELAKRLRP--FGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV 229 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~--~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV 229 (346)
+|||||||.||+.+.+.++. .+++ |.+||++..+.. ....... ...+++|++++.|+|
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~-----------------~~~~~~~~~~~s~ide~~~~~Dlv 64 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAK-----------------ELEASVGRRCVSDIDELIAEVDLV 64 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHH-----------------HHHhhcCCCccccHHHHhhcccee
Confidence 79999999999999999984 3455 788998765421 1111111 236789999999998
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHH
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE 269 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~ 269 (346)
+=|.... ..+ .-..+.+|.|-=+|=+|-|.+.|+.
T Consensus 65 VEaAS~~-Av~----e~~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 65 VEAASPE-AVR----EYVPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred eeeCCHH-HHH----HHhHHHHhcCCCEEEEechhccChH
Confidence 8776421 111 1123335666556666678877543
No 224
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.81 E-value=0.004 Score=66.29 Aligned_cols=130 Identities=16% Similarity=0.135 Sum_probs=80.4
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc---cccchhhhccccccc-ccc----ccCCcCCHHHHhhc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-LVD----EKGCHEDIFEFASK 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~----~~~~~~~l~ell~~ 225 (346)
++|+|||.|.||..+|..+...|++|+.+|++........ .......+..+.+.. ..+ ......++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999988999999998764321100 000000000100000 000 00012455 44799
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeEEEEecC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGGLGIDVA 288 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~ 288 (346)
||+|+=++|-..+.+.=+-++.-+.++++++|-... +-++-.+|..+++. .++ .++=.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~~p~r~--ig~Hff 452 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALKRPENF--CGMHFF 452 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcCCcccE--EEEecC
Confidence 999999999888877766677667789999875443 33556667777653 234 344444
No 225
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.79 E-value=0.0013 Score=53.35 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=45.3
Q ss_pred eEEEEecCHHHHHHHHHHccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh--cCC
Q 019081 155 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD 227 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD 227 (346)
++||||+|.+|+.....+... ++++. ++|++..+.. ......+ .+.+++++++ +.|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ll~~~~~D 64 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAE-----------------AFAEKYGIPVYTDLEELLADEDVD 64 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHTTSEEESSHHHHHHHTTES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHH-----------------HHHHHhcccchhHHHHHHHhhcCC
Confidence 699999999999998777654 66765 5777643321 1111111 3578999997 789
Q ss_pred EEEEeecC
Q 019081 228 VVVCCLSL 235 (346)
Q Consensus 228 iV~~~lPl 235 (346)
+|+++.|.
T Consensus 65 ~V~I~tp~ 72 (120)
T PF01408_consen 65 AVIIATPP 72 (120)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 99999985
No 226
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.76 E-value=0.0049 Score=58.88 Aligned_cols=134 Identities=17% Similarity=0.159 Sum_probs=82.1
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc---cccchhhhcccccccc-ccc-cC---CcCCHHHHhh
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDDL-VDE-KG---CHEDIFEFAS 224 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~-~~---~~~~l~ell~ 224 (346)
-++|||||.|.||+.+|..+..-|++|..+|++........ .....-.++.+.+.+. .+. .. ...++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 47999999999999999999886799999999843211000 0000000111100010 000 01 123333 689
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 291 (346)
+||+|+=.+|-+.+.+.-+-++.=...||+++|= |||+ +.-.++.++++ .+=...++=.|.+-
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~ 145 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPV 145 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCC
Confidence 9999999999888877777677667789999874 4443 44567777773 33334566665443
No 227
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.76 E-value=0.0021 Score=58.03 Aligned_cols=96 Identities=21% Similarity=0.345 Sum_probs=59.3
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (346)
.-+|.|++|.|||.|.+|..-++.|..+|++|+++++...+.... +.. .+.+ .+.. ..+ . .+.+..+|
T Consensus 4 ~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~------l~~-~~~i-~~~~--~~~-~-~~dl~~~~ 71 (205)
T TIGR01470 4 FANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL------LAE-QGGI-TWLA--RCF-D-ADILEGAF 71 (205)
T ss_pred EEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH------HHH-cCCE-EEEe--CCC-C-HHHhCCcE
Confidence 356899999999999999999999999999999998765421000 000 0000 0100 011 1 34567788
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~ 260 (346)
+|+.+.. .++ +|.......+.-.++||+
T Consensus 72 lVi~at~-d~~----ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 72 LVIAATD-DEE----LNRRVAHAARARGVPVNV 99 (205)
T ss_pred EEEECCC-CHH----HHHHHHHHHHHcCCEEEE
Confidence 8777643 222 345555555555677776
No 228
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.73 E-value=0.0023 Score=62.72 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=64.3
Q ss_pred CeEEEEecCHHHHHHHHHHccCC-------CEEEEEcCCCcccccc-ccccchhhhcccccc--ccccccCCcCCHHHHh
Q 019081 154 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWASHSQV-SCQSSALAVKNGIID--DLVDEKGCHEDIFEFA 223 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell 223 (346)
.+|+|||.|.-|.++|..+...| .+|..|.++....... .+.....+...+.+. .+.+......++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999997554 7898887764310000 000000000000000 0111111236888999
Q ss_pred hcCCEEEEeecCCccccCCCCHHHHc--cCCCCcEEEEcCCCCCCC
Q 019081 224 SKADVVVCCLSLNKQTAGIVNKSFLS--SMKKGSLLVNIARGGLLD 267 (346)
Q Consensus 224 ~~aDiV~~~lPlt~~T~~li~~~~l~--~mk~gailIN~sRg~~vd 267 (346)
+.||+|++++|. ...+.++.+ .-. .+++++++|+++-|=-.+
T Consensus 92 ~~aDiIvlAVPs-q~l~~vl~~-l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 92 EDADLLIFVIPH-QFLESVLSQ-IKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred hcCCEEEEEcCh-HHHHHHHHH-hccccccCCCCEEEEEeCCcccC
Confidence 999999999994 334433321 112 356688999998774433
No 229
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.69 E-value=0.0032 Score=51.53 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=53.6
Q ss_pred eEEEEe-cCHHHHHHHHHHccC-CCEEEEE-cCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081 155 TVFILG-FGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 155 tvgIiG-~G~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~ 231 (346)
++||+| .|.+|+.+++.+... ++++.++ +++.......... ...+...........+++ ..++|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~DvV~~ 71 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEA-------GPHLKGEVVLELEPEDFE--ELAVDIVFL 71 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHH-------CcccccccccccccCChh--hcCCCEEEE
Confidence 589999 599999999988874 8887776 4332111000000 000000000000112232 258999999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
++|.. .+...+. .....+++|.++|++|
T Consensus 72 ~~~~~-~~~~~~~-~~~~~~~~g~~viD~s 99 (122)
T smart00859 72 ALPHG-VSKEIAP-LLPKAAEAGVKVIDLS 99 (122)
T ss_pred cCCcH-HHHHHHH-HHHhhhcCCCEEEECC
Confidence 99965 3333222 2345578999999997
No 230
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0023 Score=62.98 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=64.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081 154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
+++.|||+|.||+.+|..|..-| .+|++.||+..+..+.... .. .+ +....-.......+.+++++.|+|+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~-~~----~~-v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL-IG----GK-VEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh-cc----cc-ceeEEecccChHHHHHHHhcCCEEEEe
Confidence 57899999999999999998888 8999999986542111000 00 00 000000001235688999999999999
Q ss_pred ecCCccccCCCCHHHH-ccCCCCcEEEEcCCCCC
Q 019081 233 LSLNKQTAGIVNKSFL-SSMKKGSLLVNIARGGL 265 (346)
Q Consensus 233 lPlt~~T~~li~~~~l-~~mk~gailIN~sRg~~ 265 (346)
+|.. ++...+ +.++.|.-.+++|-.+-
T Consensus 76 ~p~~------~~~~i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 76 APPF------VDLTILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred CCch------hhHHHHHHHHHhCCCEEEcccCCc
Confidence 9964 233444 33566777777765443
No 231
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.68 E-value=0.001 Score=60.92 Aligned_cols=116 Identities=24% Similarity=0.285 Sum_probs=67.3
Q ss_pred ccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccc------cchhh--------hc--cc
Q 019081 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ------SSALA--------VK--NG 204 (346)
Q Consensus 142 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~------~~~~~--------~~--~~ 204 (346)
+|+......|..++|.|+|+|.+|..+|+.|...|+ +++.+|...-....-.+. +.+.. .+ +.
T Consensus 10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (228)
T cd00757 10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP 89 (228)
T ss_pred hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC
Confidence 355444467899999999999999999999999998 688887643221110000 00000 00 00
Q ss_pred cc-cccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 205 II-DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 205 ~~-~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
.. ...........++++++.++|+|+.++. +..++..+++...+ .+.-+|..+
T Consensus 90 ~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 90 DVEIEAYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred CCEEEEecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 00 0000000012345678888999998876 56677777665543 345566664
No 232
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.67 E-value=0.0042 Score=59.80 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=73.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhcccccccccc--ccC-CcCCHHHHhhcCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKG-CHEDIFEFASKAD 227 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~l~ell~~aD 227 (346)
..++|+|||.|.+|..+|..+...| .++..+|++........ .+..+. ..... ... ...+++ .+++||
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~-lDl~~~------~~~~~~~~~i~~~~d~~-~l~~AD 75 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKA-LDLKHF------STLVGSNINILGTNNYE-DIKDSD 75 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHH-HHHhhh------ccccCCCeEEEeCCCHH-HhCCCC
Confidence 4679999999999999999888777 68999998654321110 000000 00000 000 124666 679999
Q ss_pred EEEEee--cCCcc-cc--------CCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH--hCCCeEEE--Ee
Q 019081 228 VVVCCL--SLNKQ-TA--------GIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE--CGHLGGLG--ID 286 (346)
Q Consensus 228 iV~~~l--Plt~~-T~--------~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~--~g~i~ga~--lD 286 (346)
+|+++. |..+. ++ .++- .+.+....|.+++||++-..=+-...+.+.-. ..++.|.+ ||
T Consensus 76 iVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 76 VVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 999998 43331 11 1110 12344456889999996544344444544432 45677666 66
No 233
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.66 E-value=0.01 Score=56.36 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=33.8
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~ 186 (346)
.+.+|++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 47789999999999999999999999996 99999875
No 234
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.62 E-value=0.056 Score=54.23 Aligned_cols=166 Identities=17% Similarity=0.119 Sum_probs=91.1
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEE--------EcCCCccccccccccchhhhccccc-ccccccc-C-Cc
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA--------TKRSWASHSQVSCQSSALAVKNGII-DDLVDEK-G-CH 216 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~--------~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~ 216 (346)
+.+|.|+||.|=|+|++|+..|+.|..+|++|++ ||+..-..... .....+...++-+ ......+ + ..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l-~~l~~~k~~~~~~~~~~~~~~~ga~~ 301 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKI-DYMLELRASGNDIVAPYAEKFPGSTF 301 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHH-HHHHHHHHhcCccHHHHHhcCCCCEE
Confidence 4579999999999999999999999999999999 66442221000 0000000000000 0000011 1 11
Q ss_pred CCHHHHh-hcCCEEEEeecCCccccCCCCHHHHccCC-C-CcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCC
Q 019081 217 EDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK-K-GSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF 293 (346)
Q Consensus 217 ~~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk-~-gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl 293 (346)
.+-++++ ..|||++-|. +.+.|+.+...++. . =.+++--+-| .+..++ .+.|++..|.-+ =|+
T Consensus 302 i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~~v-PD~------ 367 (445)
T PRK14030 302 FAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQLFA-PGK------ 367 (445)
T ss_pred cCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCEEe-Ccc------
Confidence 1223333 4699888764 67789998877773 2 3455666677 455543 477777776533 222
Q ss_pred CCCCCCCCCCceEE--------ccCCCCCcHHHHHHHHHHHHHHHHHH
Q 019081 294 DPNDPILKFKNVLI--------TPHVGGVTEHSYRSMAKVVGDVALQL 333 (346)
Q Consensus 294 ~~~~pL~~~~nvii--------TPH~a~~t~~~~~~~~~~~~~ni~~~ 333 (346)
+-+.--|++ .-|.-+..++..+++.+.+.+...+.
T Consensus 368 -----~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v 410 (445)
T PRK14030 368 -----AVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQC 410 (445)
T ss_pred -----eecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 112222222 23445555666666666555555543
No 235
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.62 E-value=0.0025 Score=53.77 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=49.5
Q ss_pred EEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecC
Q 019081 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235 (346)
Q Consensus 156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPl 235 (346)
+-|+|.|.+++++++.++.+|++|+++|++... ++.++-+. +.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~----------------------------------~~~~~~~~-~~~~ 45 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER----------------------------------FPEADEVI-CIPP 45 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----------------------------------TTSSEEE-CSHH
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc----------------------------------cCCCCccE-ecCh
Confidence 469999999999999999999999999976321 01222221 1111
Q ss_pred CccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEE
Q 019081 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI 285 (346)
Q Consensus 236 t~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~l 285 (346)
++ + .+.+ .+.++.++| ++++.-.|.+.|..+|++ ...+.|+
T Consensus 46 -~~---~--~~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 46 -DD---I--LEDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp -HH---H--HHHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred -HH---H--Hhcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 00 0 0111 355666666 788888888888888887 4444443
No 236
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.62 E-value=0.0051 Score=58.76 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=62.1
Q ss_pred CCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcC
Q 019081 153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA 226 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a 226 (346)
-+++||||.|..|+.-++.+.. +.. +|.+|+|+..+...... .+....+ ...+.++++++|
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~-------------~~~~~~~~~v~~~~~~~eav~~a 183 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAE-------------RFSKEFGVDIRPVDNAEAALRDA 183 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHH-------------HHHHhcCCcEEEeCCHHHHHhcC
Confidence 4699999999999988877654 455 69999998755321110 1111111 236899999999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
|+|+.+.|. +..+++.+. +|||+.++-++
T Consensus 184 DIV~taT~s---~~P~~~~~~---l~pg~hV~aiG 212 (301)
T PRK06407 184 DTITSITNS---DTPIFNRKY---LGDEYHVNLAG 212 (301)
T ss_pred CEEEEecCC---CCcEecHHH---cCCCceEEecC
Confidence 999998764 456787775 47887766655
No 237
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.60 E-value=0.0058 Score=57.03 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=63.5
Q ss_pred CeEEEEecCHHHHHHHHHHccC---CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHH-hhcCCE
Q 019081 154 KTVFILGFGNIGVELAKRLRPF---GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADV 228 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~---G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDi 228 (346)
.+|||||||.||+.+++.+..- ++++.+ +++..... ..+........+++++ ....|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~-----------------~~~~~~~~~~~~l~~ll~~~~Dl 65 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP-----------------PALAGRVALLDGLPGLLAWRPDL 65 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH-----------------HHhhccCcccCCHHHHhhcCCCE
Confidence 5899999999999999988642 366544 55543221 0111111134679997 578999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCC---HHHHHHHHHhC
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD---YEAIAHYLECG 278 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd---~~aL~~aL~~g 278 (346)
|+=|..... +-+--..-++.|.=++=.|-|.+-| ++.|.++.+++
T Consensus 66 VVE~A~~~a-----v~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 66 VVEAAGQQA-----IAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred EEECCCHHH-----HHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 988775321 1111222256677777788888887 45666655553
No 238
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.59 E-value=0.056 Score=51.78 Aligned_cols=65 Identities=25% Similarity=0.268 Sum_probs=48.2
Q ss_pred ccCCCeEEEEec---CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
.+.|++|+++|= +++.++++..+..||++|....|..-... . ........++++.+++|
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~-----------------~-~~~~~~~~d~~ea~~~a 214 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPE-----------------G-MPEYGVHTDLDEVIEDA 214 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcc-----------------c-ccceEEECCHHHHhCCC
Confidence 378999999998 58999999999999999998876322100 0 00011246899999999
Q ss_pred CEEEEe
Q 019081 227 DVVVCC 232 (346)
Q Consensus 227 DiV~~~ 232 (346)
|+|...
T Consensus 215 Dvvyt~ 220 (305)
T PRK00856 215 DVVMML 220 (305)
T ss_pred CEEEEC
Confidence 999773
No 239
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.56 E-value=0.0027 Score=58.84 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=37.0
Q ss_pred ccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 142 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
.|+......|..++|+|+|+|.+|..+++.|...|. ++..+|...
T Consensus 21 ~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 21 GFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred hcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 455433467999999999999999999999998887 688887643
No 240
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.56 E-value=0.0024 Score=62.09 Aligned_cols=104 Identities=21% Similarity=0.215 Sum_probs=62.3
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc---cccCCcCCHHHHhhcCCEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV---DEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ell~~aDiV~ 230 (346)
.+|+|||.|.+|..+|..|...| .|+.|.++..... .... ... ......+.. .......++.+.++.+|+|+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~-~i~~-~~~--~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi 82 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETAD-DIND-NHR--NSRYLGNDVVLSDTLRATTDFAEAANCADVVV 82 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHH-HHHh-cCC--CcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence 57999999999999999999888 6777766432210 0000 000 000000000 00012357888899999999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
+++|. ..++..+. +.-..++++..+|++.-|=
T Consensus 83 lavps-~~~~~vl~-~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 83 MGVPS-HGFRGVLT-ELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred EEeCH-HHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence 99993 34444432 2223467888899998763
No 241
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.54 E-value=0.0051 Score=59.17 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=60.8
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh-hcCCEEEEee
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCCL 233 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~~~l 233 (346)
+++|||.|.+|..+|..|...|.+|..++|+......-...-....+..+ ...........++++.+ ..+|+|++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~Dliiiav 79 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPT--CHLPDNISVKSAIDEVLSDNATCIILAV 79 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCC--CcCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence 69999999999999999999999999999864211000000000000000 00000000124666766 5899999999
Q ss_pred cCCccccCCCCHHHHc-cCCCCcEEEEcCCCC
Q 019081 234 SLNKQTAGIVNKSFLS-SMKKGSLLVNIARGG 264 (346)
Q Consensus 234 Plt~~T~~li~~~~l~-~mk~gailIN~sRg~ 264 (346)
|. ..++.++.. .-. .++++..+|...-|=
T Consensus 80 ks-~~~~~~l~~-l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 80 PT-QQLRTICQQ-LQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CH-HHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence 95 344444332 222 456777777776553
No 242
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.50 E-value=0.0024 Score=62.05 Aligned_cols=44 Identities=32% Similarity=0.495 Sum_probs=37.2
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
|+......|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 44333467899999999999999999999999999 899999753
No 243
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.48 E-value=0.0053 Score=60.32 Aligned_cols=36 Identities=36% Similarity=0.409 Sum_probs=32.5
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~ 188 (346)
.++|||||.|..|+.+++.++.+|++|+++|+....
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 378999999999999999999999999999986543
No 244
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.46 E-value=0.0025 Score=59.56 Aligned_cols=126 Identities=18% Similarity=0.231 Sum_probs=74.3
Q ss_pred EEEEec-CHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhcccccccc-ccccCCcCCHHHHhhcCCEE
Q 019081 156 VFILGF-GNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 156 vgIiG~-G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV 229 (346)
|+|||. |.+|..+|..+...| -+|..||.+.............+. ... ........++.+.+++||+|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~------~~~~~~~i~~~~d~~~~~~~aDiV 74 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAV------EPLADIKVSITDDPYEAFKDADVV 74 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhh------hhccCcEEEECCchHHHhCCCCEE
Confidence 589999 999999999987667 689999987643211111000000 000 00001235678889999999
Q ss_pred EEeecCCccccCC------------CC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEEE-EecC
Q 019081 230 VCCLSLNKQTAGI------------VN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG-IDVA 288 (346)
Q Consensus 230 ~~~lPlt~~T~~l------------i~--~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~-lDV~ 288 (346)
+++.-. +...++ +. .+.+++..|++++||++-.-=+-...+.+. +...++-|.+ +|..
T Consensus 75 v~t~~~-~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 75 IITAGV-GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred EECCCC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 996521 111121 10 123444558999999963322334445444 4567888988 8875
No 245
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.008 Score=59.13 Aligned_cols=111 Identities=23% Similarity=0.335 Sum_probs=70.8
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhc-----cccccccccccC-CcCCHHH
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK-----NGIIDDLVDEKG-CHEDIFE 221 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~l~e 221 (346)
+.+|.|+||.|=|+|++|+..|+.+...|.+|++++.+...-..+ .++.+. .+-........+ ...+-++
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~----~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e 277 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDE----DGLDVEALLELKERRGSVAEYAGAEYITNEE 277 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecC----CCCCHHHHHHHhhhhhhHHhhcCceEccccc
Confidence 345999999999999999999999998899999988665411000 000000 000000111111 1222355
Q ss_pred Hh-hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081 222 FA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY 268 (346)
Q Consensus 222 ll-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~ 268 (346)
++ ..|||++-| .+.+.|+.+...++|-. +++--+-|++-.+
T Consensus 278 ~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~e 319 (411)
T COG0334 278 LLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTPE 319 (411)
T ss_pred cccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCHH
Confidence 55 468988765 46778999988888866 7888888887533
No 246
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.45 E-value=0.12 Score=48.72 Aligned_cols=187 Identities=18% Similarity=0.231 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccC----CC-------EEEEEcC
Q 019081 116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR 184 (346)
Q Consensus 116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~----G~-------~V~~~d~ 184 (346)
+|=-+++-+|+.+|-. +..|.+.++.|+|.|.-|-.+|+.+... |. +++.+|+
T Consensus 4 Ta~V~lAgllnAlk~~----------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~ 67 (279)
T cd05312 4 TAAVALAGLLAALRIT----------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDS 67 (279)
T ss_pred HHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcC
Confidence 4556677777777642 5778999999999999999999998776 87 7899998
Q ss_pred CCccccccccccchhhhccccccccccccC--CcCCHHHHhh--cCCEEEEeecCCccccCCCCHHHHccCC---CCcEE
Q 019081 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMK---KGSLL 257 (346)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aDiV~~~lPlt~~T~~li~~~~l~~mk---~gail 257 (346)
..--...... ...+ + ..+..... ...+|.|+++ ++|+++-+- ...|+|+++.++.|. +.+++
T Consensus 68 ~Gll~~~r~~-l~~~--~----~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PII 136 (279)
T cd05312 68 KGLLTKDRKD-LTPF--K----KPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPII 136 (279)
T ss_pred CCeEeCCCCc-chHH--H----HHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEE
Confidence 6421100000 0000 0 01111111 2358999999 889998742 234799999999998 89999
Q ss_pred EEcCCCCCCCHHHHHHHHH--hCC-CeEEEEecCCCCCCCC---CC---CCCCCCceEEccCCCCC-----cHHHHHHHH
Q 019081 258 VNIARGGLLDYEAIAHYLE--CGH-LGGLGIDVAWTEPFDP---ND---PILKFKNVLITPHVGGV-----TEHSYRSMA 323 (346)
Q Consensus 258 IN~sRg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EPl~~---~~---pL~~~~nviiTPH~a~~-----t~~~~~~~~ 323 (346)
.=.|....-.|-.=.+|.+ +|+ |.+.|. |+++ +. .-=..-|+++-|=++-. .......|.
T Consensus 137 FaLSNPt~~~E~~pe~a~~~t~G~ai~ATGs------Pf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~ 210 (279)
T cd05312 137 FALSNPTSKAECTAEDAYKWTDGRALFASGS------PFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMF 210 (279)
T ss_pred EECCCcCCccccCHHHHHHhhcCCEEEEeCC------CCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHH
Confidence 9999887644444444444 355 555442 2222 11 11246789999977632 122235566
Q ss_pred HHHHHHHHHHHc
Q 019081 324 KVVGDVALQLHA 335 (346)
Q Consensus 324 ~~~~~ni~~~~~ 335 (346)
..+++.|-.+..
T Consensus 211 ~aAA~aLA~~~~ 222 (279)
T cd05312 211 LAAAEALASLVT 222 (279)
T ss_pred HHHHHHHHHhCC
Confidence 666666665543
No 247
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.39 E-value=0.0079 Score=58.57 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=61.2
Q ss_pred CCeEEEEecCHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
-++++|||.|..++.-++.+. -+.. +|.+|+|+..+........ ....-......+.++++++||+|+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~----------~~~~~~v~~~~~~~~av~~ADIIv 198 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNL----------AGPGLRIVACRSVAEAVEGADIIT 198 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHH----------HhcCCcEEEeCCHHHHHhcCCEEE
Confidence 368999999999988877554 3444 6999999865421111000 000000002368999999999999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
.+.|.+ ++.-++..+. +|||+.+.-++
T Consensus 199 taT~S~-~~~Pvl~~~~---lkpG~hV~aIG 225 (346)
T PRK07589 199 TVTADK-TNATILTDDM---VEPGMHINAVG 225 (346)
T ss_pred EecCCC-CCCceecHHH---cCCCcEEEecC
Confidence 998743 2235677665 59999877665
No 248
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.37 E-value=0.0066 Score=52.40 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=35.7
Q ss_pred CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 147 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
..-+|.|++|.|||.|.+|...++.|...|++|+++++..
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 3468999999999999999999999999999999997543
No 249
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.32 E-value=0.083 Score=49.11 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-----------EEEEEcC
Q 019081 116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR 184 (346)
Q Consensus 116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-----------~V~~~d~ 184 (346)
+|=-+++-+++.+|- .+..|.+.++.|+|.|..|-.+|+.+...++ +++.+|+
T Consensus 4 TaaV~lAgllnAlk~----------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~ 67 (254)
T cd00762 4 TASVAVAGLLAALKV----------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDR 67 (254)
T ss_pred hHHHHHHHHHHHHHH----------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECC
Confidence 344567777777763 2567899999999999999999999987766 6888887
Q ss_pred CCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCEEEEeecCCccccCCCCHHHHccCC---CCcEEEE
Q 019081 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMK---KGSLLVN 259 (346)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~~~lPlt~~T~~li~~~~l~~mk---~gailIN 259 (346)
..--...... ...+. . .+.+.........+|.|+++ +.|+++-.. ...|+|.++.++.|. +..++.=
T Consensus 68 ~Gll~~~r~~-l~~~~--~-~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 68 KGLLVKNRKE-TCPNE--Y-HLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred CCeEeCCCCc-cCHHH--H-HHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 5421100000 00000 0 00001111113368999999 999998742 335899999999999 8999999
Q ss_pred cCCCCCCCHHHHHHHHHh--C-CCeEEEEecCCCCCCCCCC---CCCCCCceEEccCCCCCc-----HHHHHHHHHHHHH
Q 019081 260 IARGGLLDYEAIAHYLEC--G-HLGGLGIDVAWTEPFDPND---PILKFKNVLITPHVGGVT-----EHSYRSMAKVVGD 328 (346)
Q Consensus 260 ~sRg~~vd~~aL~~aL~~--g-~i~ga~lDV~~~EPl~~~~---pL~~~~nviiTPH~a~~t-----~~~~~~~~~~~~~ 328 (346)
.|....-.|-.=-+|.+- | .|.+.|--.+..+- +. ..=..-|+++-|=++-.. ......|...+++
T Consensus 140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~---~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~ 216 (254)
T cd00762 140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL---NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAE 216 (254)
T ss_pred CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc---CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHH
Confidence 998877444333334443 4 45444332221111 11 112567999999776321 1122455555555
Q ss_pred HHHHHH
Q 019081 329 VALQLH 334 (346)
Q Consensus 329 ni~~~~ 334 (346)
.|-.+.
T Consensus 217 aLA~~v 222 (254)
T cd00762 217 AIASSV 222 (254)
T ss_pred HHHhhC
Confidence 555443
No 250
>PRK12862 malic enzyme; Reviewed
Probab=96.26 E-value=0.1 Score=55.97 Aligned_cols=168 Identities=17% Similarity=0.132 Sum_probs=110.2
Q ss_pred CcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-
Q 019081 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (346)
Q Consensus 99 gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~- 177 (346)
+|+|.|.- . ..+|=-+++.+++.+|- .++.+...++.|.|.|.-|-.+|+.+...|.
T Consensus 161 ~ip~f~DD-~-----~GTa~v~la~l~~a~~~----------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 161 KIPVFHDD-Q-----HGTAIIVAAALLNGLKL----------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCceEecC-c-----ccHHHHHHHHHHHHHHH----------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 58888873 2 34566677777777764 2578999999999999999999999999998
Q ss_pred --EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCc
Q 019081 178 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 255 (346)
Q Consensus 178 --~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~ga 255 (346)
+++.+|+..--..........+ + ..++.. ....+|.|+++.+|+++-.- +.|+++++.++.|.+.+
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~--~----~~~a~~-~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~p 286 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPW--K----ARYAQK-TDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRP 286 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHH--H----HHHhhh-cccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence 7999997542110000000000 0 011111 12358999999999988642 25899999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHh--CCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCC
Q 019081 256 LLVNIARGGLLDYEAIAHYLEC--GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 312 (346)
Q Consensus 256 ilIN~sRg~~vd~~aL~~aL~~--g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a 312 (346)
++.=.|....- -.-.+|.+- |.|.+-|- . +.| =..-|+++-|=++
T Consensus 287 iifalsNP~~E--~~p~~a~~~~~~~i~atGr-----s----~~p-~Q~NN~~~FPgi~ 333 (763)
T PRK12862 287 LIFALANPTPE--ILPEEARAVRPDAIIATGR-----S----DYP-NQVNNVLCFPYIF 333 (763)
T ss_pred EEEeCCCCccc--CCHHHHHHhcCCEEEEECC-----c----CCC-Ccccceeeccchh
Confidence 99999987752 122223333 45555441 1 111 1357899999765
No 251
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.25 E-value=0.081 Score=56.44 Aligned_cols=171 Identities=17% Similarity=0.152 Sum_probs=109.7
Q ss_pred CCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC
Q 019081 98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV 177 (346)
Q Consensus 98 ~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~ 177 (346)
..|+|.|.- . ..+|=-+++.+++.+|- .+..+...++.|.|.|.-|-.+|+.+...|.
T Consensus 152 ~~ip~f~DD-~-----~GTa~v~lA~l~na~~~----------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 209 (752)
T PRK07232 152 MDIPVFHDD-Q-----HGTAIISAAALLNALEL----------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGA 209 (752)
T ss_pred cCCCeeccc-c-----chHHHHHHHHHHHHHHH----------------hCCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence 368888763 2 34566677777777764 2578899999999999999999999998898
Q ss_pred ---EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCC
Q 019081 178 ---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKG 254 (346)
Q Consensus 178 ---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~g 254 (346)
+++.+|+..--..........+ + ..++.. ....+|.|+++.+|+++-.- +.|+++++.++.|.+.
T Consensus 210 ~~~~i~~~D~~G~i~~~r~~~~~~~--k----~~~a~~-~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~~M~~~ 277 (752)
T PRK07232 210 KKENIIVCDSKGVIYKGRTEGMDEW--K----AAYAVD-TDARTLAEAIEGADVFLGLS-----AAGVLTPEMVKSMADN 277 (752)
T ss_pred CcccEEEEcCCCeecCCCcccccHH--H----HHHhcc-CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccC
Confidence 7999997642110000000000 0 011111 12358999999999887641 2589999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCC
Q 019081 255 SLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 312 (346)
Q Consensus 255 ailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a 312 (346)
+++.=.|....--..+.......|.|.+-|- . +.| =..-|+++-|=++
T Consensus 278 piifalsNP~~E~~p~~a~~~~~~~i~atGr-----s----~~p-nQ~NN~~~FPgi~ 325 (752)
T PRK07232 278 PIIFALANPDPEITPEEAKAVRPDAIIATGR-----S----DYP-NQVNNVLCFPYIF 325 (752)
T ss_pred CEEEecCCCCccCCHHHHHHhcCCEEEEECC-----c----CCC-Ccccceeecchhh
Confidence 9999999887522222222222245555441 1 111 1356788888655
No 252
>PRK12861 malic enzyme; Reviewed
Probab=96.25 E-value=0.091 Score=56.09 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=118.2
Q ss_pred CcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-
Q 019081 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (346)
Q Consensus 99 gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~- 177 (346)
.|+|.|.- . ..+|=-+++.+++.+|- .++.|...++.|.|.|.-|..+|+.+...|.
T Consensus 157 ~ipvf~DD-~-----qGTa~v~lA~llnal~~----------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~ 214 (764)
T PRK12861 157 KIPVFHDD-Q-----HGTAITVSAAFINGLKV----------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLP 214 (764)
T ss_pred CCCeeccc-c-----chHHHHHHHHHHHHHHH----------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 78888863 2 34566677778877764 2578999999999999999999999999998
Q ss_pred --EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCc
Q 019081 178 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 255 (346)
Q Consensus 178 --~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~ga 255 (346)
+++.+|+..--.......... ++ ..++.. ....+|.|+++.+|+++-.- +.|+++++.++.|.+.+
T Consensus 215 ~~~i~~~D~~Gli~~~r~~~l~~--~k----~~~a~~-~~~~~L~eai~~advliG~S-----~~g~ft~e~v~~Ma~~P 282 (764)
T PRK12861 215 VENIWVTDIEGVVYRGRTTLMDP--DK----ERFAQE-TDARTLAEVIGGADVFLGLS-----AGGVLKAEMLKAMAARP 282 (764)
T ss_pred hhhEEEEcCCCeeeCCCcccCCH--HH----HHHHhh-cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence 799999654211000000000 00 011111 12368999999999886642 25899999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhCC-CeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCC-----cHHHHHHHHHHHHHH
Q 019081 256 LLVNIARGGLLDYEAIAHYLECGH-LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGV-----TEHSYRSMAKVVGDV 329 (346)
Q Consensus 256 ilIN~sRg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~-----t~~~~~~~~~~~~~n 329 (346)
++.=.|....--..+.+.. -.|+ |.+-|- . +.| =..-|+++-|=++-. .....+.|...+++.
T Consensus 283 IIFaLsNPtpE~~pe~a~~-~~g~aivaTGr------s---~~p-nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~a 351 (764)
T PRK12861 283 LILALANPTPEIFPELAHA-TRDDVVIATGR------S---DYP-NQVNNVLCFPYIFRGALDVGATTITREMEIAAVHA 351 (764)
T ss_pred EEEECCCCCccCCHHHHHh-cCCCEEEEeCC------c---CCC-CccceeeecchhhHHHHHcCCccCCHHHHHHHHHH
Confidence 9999998775222222222 2244 433211 0 111 135789999976532 112224455555555
Q ss_pred HHHHH
Q 019081 330 ALQLH 334 (346)
Q Consensus 330 i~~~~ 334 (346)
|-.+.
T Consensus 352 lA~~~ 356 (764)
T PRK12861 352 IAGLA 356 (764)
T ss_pred HHhhC
Confidence 54443
No 253
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.25 E-value=0.013 Score=56.02 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=61.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~ 231 (346)
++|+|||.|.+|+.+|..|...| .+|..+|++................. ..........+. +.+++||+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~-----~~~~~~i~~~~~-~~l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF-----LPSPVKIKAGDY-SDCKDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc-----cCCCeEEEcCCH-HHhCCCCEEEE
Confidence 48999999999999999998888 47999998765421111000000000 000000011234 44789999999
Q ss_pred eecCCccccCCC-------C-------HHHHccCCCCcEEEEcCCCCCCC
Q 019081 232 CLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIARGGLLD 267 (346)
Q Consensus 232 ~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sRg~~vd 267 (346)
+... +...++- | .+.+.+..|.+++|+++ ..+|
T Consensus 75 tag~-~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d 121 (306)
T cd05291 75 TAGA-PQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVD 121 (306)
T ss_pred ccCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHH
Confidence 8864 2222321 1 12344556789999997 4444
No 254
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.0084 Score=60.54 Aligned_cols=118 Identities=16% Similarity=0.086 Sum_probs=66.8
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
-+.+++++|+|+|..|+++|+.|+..|++|.++|.+.......... . .. .....- .......+.+.++|+|
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~--~--l~----~~gi~~-~~~~~~~~~~~~~dlV 81 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSN--E--LK----ELGVKL-VLGENYLDKLDGFDVI 81 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHH--H--HH----hCCCEE-EeCCCChHHhccCCEE
Confidence 3568899999999999999999999999999999764321000000 0 00 000000 0011223556789998
Q ss_pred EEeecCCccccCC-----------CCHH-HHccC-CCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 230 VCCLSLNKQTAGI-----------VNKS-FLSSM-KKGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 230 ~~~lPlt~~T~~l-----------i~~~-~l~~m-k~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
++. |.-+.+... +++- .+.+. +...+-|-=+.|..-..+-|...|+.
T Consensus 82 V~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 82 FKT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred EEC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 886 544333222 2221 22222 32344455567777666666666764
No 255
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.23 E-value=0.026 Score=56.13 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=62.6
Q ss_pred ccCCCeEEEEec----------CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCH
Q 019081 150 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI 219 (346)
Q Consensus 150 ~l~g~tvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (346)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||...... ........++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-------------------~~~~~~~~~~ 370 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-------------------VKGLPLIDDL 370 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-------------------hhhcccCCCH
Confidence 689999999998 45678999999999999999998643310 0001123578
Q ss_pred HHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081 220 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 220 ~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~ 260 (346)
++.++.||+|+++.+..+ -+. ++-+.++.+-...++|++
T Consensus 371 ~~~~~~ad~~v~~t~~~~-~~~-~~~~~~~~~~~~~~v~D~ 409 (411)
T TIGR03026 371 EEALKGADALVILTDHDE-FKD-LDLEKIKDLMKGKVVVDT 409 (411)
T ss_pred HHHHhCCCEEEEecCCHH-Hhc-cCHHHHHHhcCCCEEEeC
Confidence 899999999999987432 222 355555443335578775
No 256
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.0045 Score=56.60 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=48.8
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHH-hhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF-ASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el-l~~aDiV~~ 231 (346)
+++.|+|+|.+|..+|+.|...|++|+.+|+.............. .......+ ....|.++ +.++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~--------~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELD--------THVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcc--------eEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 578999999999999999999999999999876542110000000 00000001 12345555 688999999
Q ss_pred eecCC
Q 019081 232 CLSLN 236 (346)
Q Consensus 232 ~lPlt 236 (346)
.....
T Consensus 73 ~t~~d 77 (225)
T COG0569 73 ATGND 77 (225)
T ss_pred eeCCC
Confidence 88753
No 257
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.083 Score=51.07 Aligned_cols=163 Identities=14% Similarity=0.218 Sum_probs=114.5
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc--ccCCcCCHHHHh---hcCCE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFA---SKADV 228 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell---~~aDi 228 (346)
..+|+||++-||+.++-.....|+.|.+|+|+..+..+..+ .... ......+++++. +.--.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~fla-------------neak~~~i~ga~S~ed~v~klk~PR~ 73 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLA-------------NEAKGTKIIGAYSLEDFVSKLKKPRV 73 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHH-------------HhhcCCcccCCCCHHHHHHhcCCCcE
Confidence 36899999999999999999999999999998654211100 0011 011345777764 55677
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEc
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT 308 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiT 308 (346)
|++.+-.......+| ++....|.+|-++|+-+-...-|+..=.+.|...-|...+.-|-..|-=.-..|-+
T Consensus 74 iillvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl-------- 144 (487)
T KOG2653|consen 74 IILLVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL-------- 144 (487)
T ss_pred EEEEeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc--------
Confidence 888776554444444 45566789999999999999999999999999999888999998777422222221
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 019081 309 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 340 (346)
Q Consensus 309 PH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~ 340 (346)
+-|-+.++|..+..++.+-....-.|+|..
T Consensus 145 --MpGg~~~Awp~ik~ifq~iaakv~~~epCc 174 (487)
T KOG2653|consen 145 --MPGGSKEAWPHIKDIFQKIAAKVSDGEPCC 174 (487)
T ss_pred --CCCCChHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 226678888888776666544455666653
No 258
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.09 E-value=0.017 Score=53.81 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=44.5
Q ss_pred CeEEEEec-CHHHHHHHHHHcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081 154 KTVFILGF-GNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 228 (346)
.+|+|+|+ |.||+.+++.+.. -++++.+ +|+...... .. ...+ ...+++++++.+|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~-----------------~~-~~~~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV-----------------GQ-GALGVAITDDLEAVLADADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-----------------cc-CCCCccccCCHHHhccCCCE
Confidence 37999998 9999999998875 4788765 676543210 00 1111 34688999989999
Q ss_pred EEEeec
Q 019081 229 VVCCLS 234 (346)
Q Consensus 229 V~~~lP 234 (346)
|+.++|
T Consensus 64 Vid~t~ 69 (257)
T PRK00048 64 LIDFTT 69 (257)
T ss_pred EEECCC
Confidence 997775
No 259
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.04 E-value=0.055 Score=51.55 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=70.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV 229 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV 229 (346)
.|++++|||-=.=-..++++|...|++|..+.-.... . ...+ ...+.++++++||+|
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~--------------------~-~~~g~~~~~~~~~~~~~ad~i 59 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD--------------------H-GFTGATKSSSLEEALSDVDVI 59 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc--------------------c-ccCCceeeccHHHHhccCCEE
Confidence 3789999999999999999999999999875321111 0 0001 123567889999999
Q ss_pred EEeecCCcccc---C-------CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081 230 VCCLSLNKQTA---G-------IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 281 (346)
Q Consensus 230 ~~~lPlt~~T~---~-------li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 281 (346)
++-+|.+.+.. . -++.+.+++||+|..++ ++.+. .. +-+.+++..|.
T Consensus 60 i~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~ 116 (296)
T PRK08306 60 ILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK 116 (296)
T ss_pred EECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe
Confidence 99988754321 1 13678999999998544 33332 22 33556677775
No 260
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.02 E-value=0.12 Score=51.96 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=71.4
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEE-EcCCCcc---cccccccc-chhhhcc---cccccccccc-C-CcC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWAS---HSQVSCQS-SALAVKN---GIIDDLVDEK-G-CHE 217 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~~~~---~~~~~~~~-~~~~~~~---~~~~~~~~~~-~-~~~ 217 (346)
+.+|.|+||.|=|+|++|+..|+.|..+|++|++ .|.+..- .--..... .-...++ +-+.+..... + ...
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 4679999999999999999999999999999994 4443100 00000000 0000000 0001111100 0 111
Q ss_pred CHHHHh-hcCCEEEEeecCCccccCCCCHHHHccC-CCCcEEEEc-CCCCCCCHHHHHHHHHhCCCeE
Q 019081 218 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNI-ARGGLLDYEAIAHYLECGHLGG 282 (346)
Q Consensus 218 ~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~m-k~gailIN~-sRg~~vd~~aL~~aL~~g~i~g 282 (346)
+-++++ -.|||++-|. |.+.|+.+....+ +.++.+|-- +-+++ ..+ -.+.|++..|..
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~~ 372 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVIF 372 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcEE
Confidence 122222 4689888764 6778998887766 555655555 55554 443 446777776653
No 261
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.00 E-value=0.13 Score=49.29 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=62.2
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS 224 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~ 224 (346)
.+.|++|+++|- +++.++++..+..+|++|....|..-..+... .+......+ ...++++.++
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~------------~~~~~~~~g~~~~~~~d~~~a~~ 216 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEI------------VEKIAKETGASIEVTHDPKEAVK 216 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHH------------HHHHHHHcCCeEEEEcCHHHHhC
Confidence 378999999998 78999999999999999998876432211000 000011111 2468999999
Q ss_pred cCCEEEEee----cCCc---c-----ccCCCCHHHHccCCCCcEEEEc
Q 019081 225 KADVVVCCL----SLNK---Q-----TAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 225 ~aDiV~~~l----Plt~---~-----T~~li~~~~l~~mk~gailIN~ 260 (346)
++|+|..-. .... + -..-++++.++.+|++++|.-+
T Consensus 217 ~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304)
T PRK00779 217 GADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304)
T ss_pred CCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence 999998741 1000 0 2334566666666666665544
No 262
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.99 E-value=0.025 Score=58.22 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=34.6
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
++.+|++.|+|.|.+|++++..|...|++|++++|+..
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 57789999999999999999999999999999998643
No 263
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.98 E-value=0.02 Score=57.11 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=31.8
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+++.|||+|.+|.++|+.|+..|++|.++|++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997643
No 264
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.97 E-value=0.0079 Score=58.83 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=37.7
Q ss_pred cccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 141 ~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
..|+......|.+++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus 16 ~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 16 GEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3455444567999999999999999999999998888 688888654
No 265
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.95 E-value=0.016 Score=54.22 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=56.8
Q ss_pred CeEEEEecCHHHHHHHHHHccC-CCEEEEE-cCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~ 231 (346)
.+|||||+|.||+.+++.+... ++++.++ ++..... ... ...........+++++-.+.|+|+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~-~~~-------------~~~~~~~~~~~d~~~l~~~~DvVve 67 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSID-AVR-------------RALGEAVRVVSSVDALPQRPDLVVE 67 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHH-HHh-------------hhhccCCeeeCCHHHhccCCCEEEE
Confidence 3799999999999999988765 5665443 3321110 000 0000001124577777456899999
Q ss_pred eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH---HHHHHHHHhCC
Q 019081 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGH 279 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~ 279 (346)
|.|.... -+-....++.|.-++-.+-|...|. +.|.++.+++.
T Consensus 68 ~t~~~~~-----~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g 113 (265)
T PRK13303 68 CAGHAAL-----KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG 113 (265)
T ss_pred CCCHHHH-----HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC
Confidence 9874321 1112222444444444444544443 34555555443
No 266
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.93 E-value=0.013 Score=52.55 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=24.3
Q ss_pred eEEEEec-CHHHHHHHHHHccCCCEEE
Q 019081 155 TVFILGF-GNIGVELAKRLRPFGVKII 180 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~G~~V~ 180 (346)
+++|||. |.+|+.+++.++..|+.|.
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 7899999 9999999999999999875
No 267
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.91 E-value=0.12 Score=51.15 Aligned_cols=195 Identities=21% Similarity=0.170 Sum_probs=117.7
Q ss_pred hCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCC
Q 019081 97 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176 (346)
Q Consensus 97 ~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G 176 (346)
+..|+|.|.-- ..+|=.+++.+++.+|- .|+.|+..+|.+.|.|.-|-++++.+++.|
T Consensus 165 ~~~IPvFhDDq------qGTaiv~lA~llnalk~----------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g 222 (432)
T COG0281 165 RMNIPVFHDDQ------QGTAIVTLAALLNALKL----------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG 222 (432)
T ss_pred cCCCCcccccc------cHHHHHHHHHHHHHHHH----------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence 45688887632 34666777777777764 378899999999999999999999999999
Q ss_pred C---EEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCC
Q 019081 177 V---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 252 (346)
Q Consensus 177 ~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk 252 (346)
+ +|+.+|+...-....... .....+ ..... ....... ++.+..+|+++-+- +.|.+.++.++.|.
T Consensus 223 ~~~~~i~~~D~~G~l~~~r~~~-~~~~~k----~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma 291 (432)
T COG0281 223 VKEENIFVVDRKGLLYDGREDL-TMNQKK----YAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMA 291 (432)
T ss_pred CCcccEEEEecCCcccCCCccc-ccchHH----HHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhc
Confidence 9 599999864221100000 000000 00110 1111121 45788999988752 22999999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCc-----HHHHHHHHHHH
Q 019081 253 KGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-----EHSYRSMAKVV 326 (346)
Q Consensus 253 ~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t-----~~~~~~~~~~~ 326 (346)
+++++.=.|-...--..+.+.+-..| .|-+-| -|..|. ..-|+++-|-+.-.. ...-+.|.-.+
T Consensus 292 ~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG------rsd~Pn----QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AA 361 (432)
T COG0281 292 KHPIIFALANPTPEITPEDAKEWGDGAAIVATG------RSDYPN----QVNNVLIFPGIFRGALDVRAKTITDEMKIAA 361 (432)
T ss_pred cCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC------CCCCcc----cccceeEcchhhhhhHhhccccCCHHHHHHH
Confidence 99999988876632222222222222 333221 122122 678999999886431 11224555566
Q ss_pred HHHHHHHH
Q 019081 327 GDVALQLH 334 (346)
Q Consensus 327 ~~ni~~~~ 334 (346)
++.|..+.
T Consensus 362 a~AiA~~~ 369 (432)
T COG0281 362 AEAIADLA 369 (432)
T ss_pred HHHHHhhc
Confidence 66665554
No 268
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.90 E-value=0.028 Score=53.20 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=69.7
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHH--
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEF-- 222 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~el-- 222 (346)
....|+++.|+|.|..+++++..|+..|+ +|++++|+..+..+-. +.....+ ....+.++
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La--------------~~~~~~~~~~~~~~~~~~~~ 187 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA--------------DLFGELGAAVEAAALADLEG 187 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH--------------HHhhhccccccccccccccc
Confidence 45679999999999999999999999996 7999999865421111 1111111 01122211
Q ss_pred hhcCCEEEEeecCCcccc---CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081 223 ASKADVVVCCLSLNKQTA---GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG 278 (346)
Q Consensus 223 l~~aDiV~~~lPlt~~T~---~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g 278 (346)
+.++|+|+.++|..-.-. .+++ .+.++++.++.++--.+. .+.=|-.|=+.|
T Consensus 188 ~~~~dliINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 188 LEEADLLINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred ccccCEEEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 126999999999754432 2444 445788888888765554 333333333334
No 269
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.89 E-value=0.031 Score=52.99 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=34.0
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 188 (346)
++.+|++.|+|.|..|++++..|...|+ +|.++||+..+
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~k 163 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR 163 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence 4568999999999999999999998998 68999997643
No 270
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.89 E-value=0.015 Score=47.53 Aligned_cols=100 Identities=14% Similarity=0.268 Sum_probs=64.1
Q ss_pred CeEEEEe----cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 154 ~tvgIiG----~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
|+++||| -+..|..+.+.++..|++|+.+++....- .... .+.++.|.-...|++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i------------------~G~~---~y~sl~e~p~~iDla 59 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI------------------LGIK---CYPSLAEIPEPIDLA 59 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE------------------TTEE----BSSGGGCSST-SEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE------------------CcEE---eeccccCCCCCCCEE
Confidence 6899999 78999999999999999999998765321 1111 346777733789999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 281 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 281 (346)
++++|. +.+..+++ .+..+..+.+++..+ ..++++.+.+++..+.
T Consensus 60 vv~~~~-~~~~~~v~--~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 60 VVCVPP-DKVPEIVD--EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp EE-S-H-HHHHHHHH--HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred EEEcCH-HHHHHHHH--HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 999984 34444443 223345678888887 6778888888887665
No 271
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.85 E-value=0.13 Score=49.99 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=63.8
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 223 (346)
Q Consensus 149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 223 (346)
..+.|++|+++|= .++.++++..+..+|++|..+.|..-..+..... . +...+...+ ...++++.+
T Consensus 150 ~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~---~------~~~~~~~~g~~~~~~~d~~eav 220 (338)
T PRK02255 150 KKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLA---I------AEENCEVSGGSVLVTDDVDEAV 220 (338)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHH---H------HHHHHHhcCCeEEEEcCHHHHh
Confidence 3588999999997 6888888999999999999987643211100000 0 000000111 246899999
Q ss_pred hcCCEEEEee-----cCCc---c------ccCCCCHHHHccCCCCcEEEEc
Q 019081 224 SKADVVVCCL-----SLNK---Q------TAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 224 ~~aDiV~~~l-----Plt~---~------T~~li~~~~l~~mk~gailIN~ 260 (346)
++||+|..-. .... + ....++++.++.+|++++|.-+
T Consensus 221 ~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp 271 (338)
T PRK02255 221 KDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC 271 (338)
T ss_pred CCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence 9999998832 1100 0 1245677777777777766655
No 272
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.84 E-value=0.018 Score=47.16 Aligned_cols=94 Identities=26% Similarity=0.328 Sum_probs=50.8
Q ss_pred eEEEEe-cCHHHHHHHHHHcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081 155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 155 tvgIiG-~G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~ 231 (346)
+|+||| .|.+|+.+.++|.. ..+++.. +.++......-. ..++.+.... ... ....+. +.+.++|+|++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~~---~~~~~~-~~~~~~Dvvf~ 72 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS---EVFPHPKGFE-DLS---VEDADP-EELSDVDVVFL 72 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH---HTTGGGTTTE-EEB---EEETSG-HHHTTESEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee---hhcccccccc-cee---Eeecch-hHhhcCCEEEe
Confidence 689999 99999999999874 5666544 444431111000 0000000000 000 011233 44589999999
Q ss_pred eecCCccccCCCCHHHHcc-CCCCcEEEEcCC
Q 019081 232 CLSLNKQTAGIVNKSFLSS-MKKGSLLVNIAR 262 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~-mk~gailIN~sR 262 (346)
|+|.... ++.... .++|..+|+.|.
T Consensus 73 a~~~~~~------~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 73 ALPHGAS------KELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp -SCHHHH------HHHHHHHHHTTSEEEESSS
T ss_pred cCchhHH------HHHHHHHhhCCcEEEeCCH
Confidence 9985322 222222 578999999874
No 273
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.83 E-value=0.045 Score=47.23 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCeEEEEe--cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhc
Q 019081 152 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK 225 (346)
Q Consensus 152 ~g~tvgIiG--~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~ 225 (346)
.|+||++|| .+++.++++..+..||+++.++.+..-..+..... .... .......+ -..++++.+++
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~-~~~~------~~~~~~~g~~i~~~~~~~e~l~~ 73 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEV-LEKA------KKNAKKNGGKITITDDIEEALKG 73 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHH-HHHH------HHHHHHHTTEEEEESSHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHH-HHHH------HHHHHHhCCCeEEEeCHHHhcCC
Confidence 388999999 38999999999999999998887643111100000 0000 00000001 23689999999
Q ss_pred CCEEEEeecCC---cc--------ccCCCCHHHHccCCCCcEEEEcC
Q 019081 226 ADVVVCCLSLN---KQ--------TAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 226 aDiV~~~lPlt---~~--------T~~li~~~~l~~mk~gailIN~s 261 (346)
+|+|..-.--. .+ ....++++.++.+|++++|.-+.
T Consensus 74 aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 74 ADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp -SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 99997754431 10 12567999999999999998874
No 274
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.80 E-value=0.01 Score=58.43 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=41.1
Q ss_pred HHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081 134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (346)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 185 (346)
|.++++-..|+......|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34444434465544577999999999999999999999999998 78888865
No 275
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.80 E-value=0.011 Score=47.34 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=51.9
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc--cccCCcCCHHHHhhcCCEEEEeecCCccccC
Q 019081 164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241 (346)
Q Consensus 164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~ 241 (346)
-+..+++.|+..|++|.+|||........ ... .......++++.++.+|+|+++++-. +-+.
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~ 81 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIK---------------ELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRE 81 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHH---------------HHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGC
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHH---------------hhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhc
Confidence 35788999999999999999976542110 000 00012357899999999999998743 3333
Q ss_pred CCCHHHHccCCCCcEEEEc
Q 019081 242 IVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 242 li~~~~l~~mk~gailIN~ 260 (346)
+--.+..+.|+++.+||++
T Consensus 82 l~~~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 82 LDWEEIAKLMRKPPVIIDG 100 (106)
T ss_dssp CGHHHHHHHSCSSEEEEES
T ss_pred cCHHHHHHhcCCCCEEEEC
Confidence 3234455678899999997
No 276
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.73 E-value=0.037 Score=52.74 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=67.2
Q ss_pred CeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~ 231 (346)
++|+|||.|.+|..+|..+...|. +|..+|++......... .+ .+........... ...+.+ .+++||+|++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~---dl--~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKAL---DI--AEAAPVEGFDTKITGTNDYE-DIAGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHH---HH--HhhhhhcCCCcEEEeCCCHH-HHCCCCEEEE
Confidence 589999999999999999886654 99999986543211000 00 0000000000000 124554 5799999999
Q ss_pred eecCCccccCCC-----------CHH---HHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEEE--Ee
Q 019081 232 CLSLNKQTAGIV-----------NKS---FLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG--ID 286 (346)
Q Consensus 232 ~lPlt~~T~~li-----------~~~---~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~--lD 286 (346)
+... +...+.- -.+ .+....+.+++|+++-..=+....+.+. +...++-|.+ ||
T Consensus 77 ~~~~-p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~ld 148 (307)
T PRK06223 77 TAGV-PRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLD 148 (307)
T ss_pred CCCC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcH
Confidence 8632 2212210 111 2333346788888854433444444442 2224676664 55
No 277
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.73 E-value=0.015 Score=50.37 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=49.2
Q ss_pred EEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEEee
Q 019081 156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 156 vgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~~l 233 (346)
|.|+|. |.+|+.+++.|...|++|+++-|+..+..... . .+... ......++.+.++.+|.|+.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~----~--------~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSP----G--------VEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCT----T--------EEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccccc----c--------cccceeeehhhhhhhhhhhhcchhhhhh
Confidence 578995 99999999999999999999998765421100 0 01110 0112345678889999999999
Q ss_pred cCCcc
Q 019081 234 SLNKQ 238 (346)
Q Consensus 234 Plt~~ 238 (346)
+.+..
T Consensus 69 ~~~~~ 73 (183)
T PF13460_consen 69 GPPPK 73 (183)
T ss_dssp HSTTT
T ss_pred hhhcc
Confidence 86544
No 278
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.71 E-value=0.012 Score=53.26 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=62.6
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (346)
.-+|.||+|.|||.|.+|..=++.+...|++|+++.+....... . +....+ + .+.+ ..-+.++ +..++
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~---~---~~~~~~-i-~~~~---~~~~~~~-~~~~~ 74 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELK---A---LIEEGK-I-KWIE---REFDAED-LDDAF 74 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHH---H---HHHhcC-c-chhh---cccChhh-hcCce
Confidence 45799999999999999999999999999999999876522100 0 000000 0 0111 1122333 34488
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~ 260 (346)
+|+.+++.. -+|+..+..+++-.++||+
T Consensus 75 lviaAt~d~-----~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 75 LVIAATDDE-----ELNERIAKAARERRILVNV 102 (210)
T ss_pred EEEEeCCCH-----HHHHHHHHHHHHhCCceec
Confidence 888887643 2567777777777788887
No 279
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.68 E-value=0.049 Score=51.74 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=33.8
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
.++.||++.|+|.|..+++++..+...|+ +|.+++|+.
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 45788999999999999999998888887 799999975
No 280
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.67 E-value=0.025 Score=58.81 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=35.5
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.....|+|||||-|..|+.+++.++.+|++|+++|.+..
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 458899999999999999999999999999999998653
No 281
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.65 E-value=0.068 Score=54.28 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=69.4
Q ss_pred cccCCCeEEEEec----------CHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchhh--hcc--ccc-cccccc
Q 019081 149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKN--GII-DDLVDE 212 (346)
Q Consensus 149 ~~l~g~tvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~~--~~~--~~~-~~~~~~ 212 (346)
..+.|++|+|+|+ ..-...+++.|...|.+|.+||+........... ...+. ++. .++ ......
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ 399 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence 3689999999998 4578899999999999999999864321000000 00000 000 000 000000
Q ss_pred cCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHH-HccCCCCcEEEEcCCCCCCCHHHH
Q 019081 213 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF-LSSMKKGSLLVNIARGGLLDYEAI 271 (346)
Q Consensus 213 ~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~-l~~mk~gailIN~sRg~~vd~~aL 271 (346)
.....++.+.++.||+|+++.+.. +-+. ++-+. .+.|++..++||. | .++|.+.+
T Consensus 400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-r-n~l~~~~~ 455 (473)
T PLN02353 400 VSVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-R-NVLDHEKL 455 (473)
T ss_pred eeeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-C-CCCCHHHH
Confidence 001235678899999999998753 3333 34444 4557766688985 4 44565554
No 282
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=95.64 E-value=0.19 Score=48.82 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=80.5
Q ss_pred hhHHhhCCcEEEecCCCCCCC-hhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecC--HHHHHH
Q 019081 92 INAATRCGIKVARIPGDVTGN-AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVEL 168 (346)
Q Consensus 92 ~~~~~~~gI~v~n~p~~~~~n-a~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G--~IG~~v 168 (346)
.+.+...+|+|.|.-+. ..| .++.++ ++.+.++ .|..+.|++|++||=+ ++.+++
T Consensus 116 ~~~a~~~~vPVINa~~~-~~HPtQaL~D-----l~Ti~e~----------------~g~~l~gl~ia~vGD~~~~v~~Sl 173 (334)
T PRK01713 116 NELAEYAGVPVFNGLTD-EFHPTQMLAD-----VLTMIEN----------------CDKPLSEISYVYIGDARNNMGNSL 173 (334)
T ss_pred HHHHHhCCCCEEECCCC-CCChHHHHHH-----HHHHHHH----------------cCCCcCCcEEEEECCCccCHHHHH
Confidence 34455678999998443 222 333444 2222211 1234789999999986 678888
Q ss_pred HHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcCCEEEEee----cCC-c--
Q 019081 169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCL----SLN-K-- 237 (346)
Q Consensus 169 A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDiV~~~l----Plt-~-- 237 (346)
+..+..||++|.+..|..-...... ... ........+ ...++++.+++||+|..-. ... +
T Consensus 174 ~~~~~~~g~~v~~~~P~~~~p~~~~---~~~------~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~ 244 (334)
T PRK01713 174 LLIGAKLGMDVRICAPKALLPEASL---VEM------CEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETW 244 (334)
T ss_pred HHHHHHcCCEEEEECCchhcCCHHH---HHH------HHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhH
Confidence 9999999999998876432111000 000 000111111 2478999999999998732 100 0
Q ss_pred ------cccCCCCHHHHccC-CCCcEEEEc
Q 019081 238 ------QTAGIVNKSFLSSM-KKGSLLVNI 260 (346)
Q Consensus 238 ------~T~~li~~~~l~~m-k~gailIN~ 260 (346)
.....++.+.++.. |++++|.-+
T Consensus 245 ~~~~~~~~~y~v~~ell~~a~k~~aivmH~ 274 (334)
T PRK01713 245 GERIKLLMPYQVTPELMKRTGNPKVKFMHC 274 (334)
T ss_pred HHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence 01344677777775 678877766
No 283
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.63 E-value=0.029 Score=54.64 Aligned_cols=95 Identities=25% Similarity=0.242 Sum_probs=54.8
Q ss_pred CeEEEEec-CHHHHHHHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 154 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
.+|+|+|. |.+|+.+++.|... ++++.. ++++......... .++ + +...........+.++++.++|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~---~~~--~--l~~~~~~~~~~~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE---VHP--H--LRGLVDLNLEPIDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH---hCc--c--ccccCCceeecCCHHHhhcCCCEEE
Confidence 37999998 99999999999876 778774 3543211100000 000 0 0000000001125566667899999
Q ss_pred EeecCCccccCCCCHHHHccC-CCCcEEEEcC
Q 019081 231 CCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIA 261 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~m-k~gailIN~s 261 (346)
+|+|.. . .++....+ +.|..+|+.|
T Consensus 74 ~alP~~-~-----s~~~~~~~~~~G~~VIDlS 99 (346)
T TIGR01850 74 LALPHG-V-----SAELAPELLAAGVKVIDLS 99 (346)
T ss_pred ECCCch-H-----HHHHHHHHHhCCCEEEeCC
Confidence 999953 2 23333333 5688899887
No 284
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.62 E-value=0.019 Score=58.54 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.7
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~ 185 (346)
+.|++|.|+|+|.+|.+.++.|+..|++|+++|..
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46899999999999999999999999999999965
No 285
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.60 E-value=0.044 Score=52.64 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=67.3
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccc--ccCCcCCHHHHhhcCCE
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFASKADV 228 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDi 228 (346)
..+|+|||.|.||..+|..+...|. ++..||.+......... +..+. ..+.. ......+.++ +++||+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~-Dl~~~------~~~~~~~~v~~~~dy~~-~~~adi 74 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAM-DLQHG------SAFLKNPKIEADKDYSV-TANSKV 74 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHH-HHHHh------hccCCCCEEEECCCHHH-hCCCCE
Confidence 3599999999999999998865554 79999986542211110 00000 00000 0001245555 899999
Q ss_pred EEEeecCCccccCC-----C--C-------HHHHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEEE
Q 019081 229 VVCCLSLNKQTAGI-----V--N-------KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG 284 (346)
Q Consensus 229 V~~~lPlt~~T~~l-----i--~-------~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~ 284 (346)
|+++.-.. ...++ + | .+.+....|.+++|+++-.-=+-...+.+. +...++.|.+
T Consensus 75 vvitaG~~-~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 75 VIVTAGAR-QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred EEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecC
Confidence 99965321 11222 1 1 123444578999999983222223333333 4455666663
No 286
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.59 E-value=0.048 Score=52.45 Aligned_cols=111 Identities=10% Similarity=0.039 Sum_probs=70.2
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCccccc-------cc-c--ccchhhhccccccc-----cccccCCcC--CHHHHhhcC
Q 019081 164 IGVELAKRLRPFGVKIIATKRSWASHSQ-------VS-C--QSSALAVKNGIIDD-----LVDEKGCHE--DIFEFASKA 226 (346)
Q Consensus 164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~-------~~-~--~~~~~~~~~~~~~~-----~~~~~~~~~--~l~ell~~a 226 (346)
||..+|..+...|++|+.||++...... .. . ......+..+.+.. ......... +..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 5888999998889999999998742100 00 0 00000001110000 000000111 356788999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 276 (346)
|+|+-++|-+.+.+.-+-++..+.++++++| +|.-+.+....|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 9999999999998888878888889999998 44555667777887774
No 287
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.58 E-value=0.022 Score=47.04 Aligned_cols=67 Identities=25% Similarity=0.379 Sum_probs=41.9
Q ss_pred eEEEEec-CHHHHHHHHHHcc-CCCEEE-EEcCCCccccccccccchhhhccccccccc--cccC--CcCCHHHHhhcCC
Q 019081 155 TVFILGF-GNIGVELAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKG--CHEDIFEFASKAD 227 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~ell~~aD 227 (346)
+|+|+|+ |+||+.+++.+.. -|+++. +++++...... .+ +.+.. ...+ ...++++++.++|
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g-~d-----------~g~~~~~~~~~~~v~~~l~~~~~~~D 69 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG-KD-----------VGELAGIGPLGVPVTDDLEELLEEAD 69 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT-SB-----------CHHHCTSST-SSBEBS-HHHHTTH-S
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc-ch-----------hhhhhCcCCcccccchhHHHhcccCC
Confidence 7999999 9999999999886 789854 56665421100 00 00000 0111 2478999999999
Q ss_pred EEEEee
Q 019081 228 VVVCCL 233 (346)
Q Consensus 228 iV~~~l 233 (346)
+|+-..
T Consensus 70 VvIDfT 75 (124)
T PF01113_consen 70 VVIDFT 75 (124)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 887765
No 288
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.55 E-value=0.023 Score=55.26 Aligned_cols=33 Identities=39% Similarity=0.490 Sum_probs=30.5
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
||||||.|..|+.+++.++.+|++|+++|.+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~ 33 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDAN 33 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 699999999999999999999999999998654
No 289
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.50 E-value=0.027 Score=53.57 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=59.8
Q ss_pred eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcc----------------cccccc-cccc---
Q 019081 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKN----------------GIIDDL-VDEK--- 213 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~--- 213 (346)
+|.|+|+|.+|..+|+.|...|. +++.+|...-......++. -|...+ ++-... +..+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~-L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~ 79 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQS-LFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCccc-ccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence 58999999999999999999998 5888875432211111100 000000 000000 0000
Q ss_pred -----------------CCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 214 -----------------GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 214 -----------------~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
.....++++++++|+|+.++ .+-++|.+++.--... +..+||.+
T Consensus 80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aa 140 (307)
T cd01486 80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAA 140 (307)
T ss_pred ccccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEE
Confidence 01123678999999999998 4778888887665443 33666654
No 290
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.50 E-value=0.025 Score=52.30 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=33.4
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 56899999999999999999999998887 688888654
No 291
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.49 E-value=0.078 Score=50.70 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=61.7
Q ss_pred ccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHH
Q 019081 150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEF 222 (346)
Q Consensus 150 ~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~el 222 (346)
.+.|++|+++|-| ++.++++..+..||++|....|..-..+.. .+ +.....+ ...++++.
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~------------~~-~~~~~~G~~v~~~~d~~~a 213 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKE------------IL-EELKAKGIKVRETESLEEV 213 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHH------------HH-HHHHHcCCEEEEECCHHHH
Confidence 4789999999995 999999999999999999987643211100 00 0011111 24789999
Q ss_pred hhcCCEEEEeecCCc------c-----ccCCCCHHHHccCCCCcEEEEc
Q 019081 223 ASKADVVVCCLSLNK------Q-----TAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 223 l~~aDiV~~~lPlt~------~-----T~~li~~~~l~~mk~gailIN~ 260 (346)
++.||+|...---.+ + ...-++++.++.+|++++|.-+
T Consensus 214 ~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc 262 (301)
T TIGR00670 214 IDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP 262 (301)
T ss_pred hCCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence 999999977311000 0 1233455666666666666544
No 292
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.47 E-value=0.35 Score=46.33 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=63.0
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhc
Q 019081 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK 225 (346)
Q Consensus 151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~ 225 (346)
+.|.+|+++|- +++-++++..+..||++|....|..-..+..... .+.......+ ...++++.+++
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~---------~~~~~~~~~g~~~~~~~d~~~a~~~ 216 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVK---------KAQEIAKENGGSVELTHDPVEAVKG 216 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHH---------HHHHHHHHcCCeEEEEcCHHHHhCC
Confidence 78999999997 7888999999999999999887643221100000 0000011111 23689999999
Q ss_pred CCEEEEee-c-CCc----------cccCCCCHHHHccCCCCcEEEEc
Q 019081 226 ADVVVCCL-S-LNK----------QTAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 226 aDiV~~~l-P-lt~----------~T~~li~~~~l~~mk~gailIN~ 260 (346)
||+|..-. . ... .....++++.++.+|+++++.-+
T Consensus 217 aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 217 ADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred CCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 99998742 1 110 12345677777777777766554
No 293
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.47 E-value=0.013 Score=55.36 Aligned_cols=113 Identities=24% Similarity=0.343 Sum_probs=73.2
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc-cccchhhhccccccccccccCC----------c
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGC----------H 216 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~ 216 (346)
+......++-++|+|-+|-..+...+..|+-|..+|-+....++.. ..-....+.+ .+....+.. .
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~---ee~~gGYAk~ms~~~~~~q~ 235 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVED---EESAGGYAKEMSEEFIAKQA 235 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccc---cccCCCccccCCHHHHHHHH
Confidence 3456778899999999999999999999999999886553321111 0000000000 000000111 1
Q ss_pred CCHHHHhhcCCEEEEe--ecCCccccCCCCHHHHccCCCCcEEEEcC--CCC
Q 019081 217 EDIFEFASKADVVVCC--LSLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGG 264 (346)
Q Consensus 217 ~~l~ell~~aDiV~~~--lPlt~~T~~li~~~~l~~mk~gailIN~s--Rg~ 264 (346)
.-+.+.+++.|||+.. +|.. ....|+.++..+.||||+++|+.+ +|+
T Consensus 236 ~~~a~~~~~~DivITTAlIPGr-pAP~Lvt~~mv~sMkpGSViVDlAa~~GG 286 (356)
T COG3288 236 ELVAEQAKEVDIVITTALIPGR-PAPKLVTAEMVASMKPGSVIVDLAAETGG 286 (356)
T ss_pred HHHHHHhcCCCEEEEecccCCC-CCchhhHHHHHHhcCCCcEEEEehhhcCC
Confidence 2345667899999764 5654 346789999999999999999985 554
No 294
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.46 E-value=0.17 Score=50.57 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=78.4
Q ss_pred hHHhhCCcEEEecC-CCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecC---HHHHHH
Q 019081 93 NAATRCGIKVARIP-GDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG---NIGVEL 168 (346)
Q Consensus 93 ~~~~~~gI~v~n~p-~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G---~IG~~v 168 (346)
+.+...+|+|.|.- |...--.++.|+. +.+..++ |. .+..+.|+||+++|-+ ++..++
T Consensus 198 e~A~~s~vPVINAgdg~~~HPtQaLaDl-----~Ti~E~~---------g~----~g~~l~G~kIa~vGD~~~~rv~~Sl 259 (429)
T PRK11891 198 EFARATNLPVINGGDGPGEHPSQALLDL-----YTIQREF---------SR----LGKIVDGAHIALVGDLKYGRTVHSL 259 (429)
T ss_pred HHHHhCCCCEEECCCCCCCCcHHHHHHH-----HHHHHHh---------Cc----cCCCcCCCEEEEECcCCCChHHHHH
Confidence 34556789999975 3221123444552 2222211 11 1234889999999994 899999
Q ss_pred HHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcCCEEEEeecCCcc-----
Q 019081 169 AKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLNKQ----- 238 (346)
Q Consensus 169 A~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDiV~~~lPlt~~----- 238 (346)
+..+..+ |++|....|..-..+.. ++ +.....+ ...++++.+++||+|....--.+.
T Consensus 260 ~~~la~~~G~~v~l~~P~~~~~~~~------------~~-~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q~er~~~~~ 326 (429)
T PRK11891 260 VKLLALYRGLKFTLVSPPTLEMPAY------------IV-EQISRNGHVIEQTDDLAAGLRGADVVYATRIQKERFADES 326 (429)
T ss_pred HHHHHHhcCCEEEEECCCccccCHH------------HH-HHHHhcCCeEEEEcCHHHHhCCCCEEEEcCchhhcccCHH
Confidence 9988776 99999887643211000 00 0111111 247899999999999884321010
Q ss_pred -----ccCCCCHHHHcc-CCCCcEEEEc
Q 019081 239 -----TAGIVNKSFLSS-MKKGSLLVNI 260 (346)
Q Consensus 239 -----T~~li~~~~l~~-mk~gailIN~ 260 (346)
....++++.++. .|++++|.-+
T Consensus 327 ~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 327 FEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred HHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 123456666666 6666665544
No 295
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.42 E-value=0.17 Score=48.98 Aligned_cols=74 Identities=22% Similarity=0.194 Sum_probs=49.0
Q ss_pred ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 223 (346)
Q Consensus 150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 223 (346)
.+.|+||++||-+ ++.++++..+..||++|....|..-....... . .........+ ...++++++
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~---~------~~~~~~~~~g~~~~~~~d~~ea~ 222 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELV---A------LAREIAKETGAKITITEDPEEAV 222 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHH---H------HHHHHHHHcCCeEEEEcCHHHHh
Confidence 4789999999997 88999999999999999988764321110000 0 0000111111 236899999
Q ss_pred hcCCEEEEe
Q 019081 224 SKADVVVCC 232 (346)
Q Consensus 224 ~~aDiV~~~ 232 (346)
++||+|..-
T Consensus 223 ~~aDvvyt~ 231 (331)
T PRK02102 223 KGADVIYTD 231 (331)
T ss_pred CCCCEEEEc
Confidence 999999884
No 296
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.38 E-value=0.025 Score=54.57 Aligned_cols=131 Identities=13% Similarity=0.114 Sum_probs=71.6
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
+..++|+|||.|.+|..+|..+...|. +|+.+|.+........ .+..+. ... ...........+. +.+++||+|
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~-ld~~~~--~~~-~~~~~~I~~~~d~-~~l~~aDiV 78 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA-LDISHS--NVI-AGSNSKVIGTNNY-EDIAGSDVV 78 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH-HHHHhh--hhc-cCCCeEEEECCCH-HHhCCCCEE
Confidence 345799999999999999999887774 8999998765321100 000000 000 0000000112466 467999999
Q ss_pred EEeecCCccccCC-----------------CC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH--hCCCeEEE--Ee
Q 019081 230 VCCLSLNKQTAGI-----------------VN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE--CGHLGGLG--ID 286 (346)
Q Consensus 230 ~~~lPlt~~T~~l-----------------i~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~--~g~i~ga~--lD 286 (346)
+++.-.. ...+. +. .+.+....|.+++||++-..=+-...+.+... ..++-|.+ ||
T Consensus 79 I~tag~~-~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlgt~ld 157 (321)
T PTZ00082 79 IVTAGLT-KRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLD 157 (321)
T ss_pred EECCCCC-CCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEecCccc
Confidence 9976321 11122 11 12234445788999998443333444444332 34676766 45
Q ss_pred c
Q 019081 287 V 287 (346)
Q Consensus 287 V 287 (346)
-
T Consensus 158 s 158 (321)
T PTZ00082 158 S 158 (321)
T ss_pred H
Confidence 4
No 297
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.36 E-value=0.064 Score=53.90 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=75.5
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
..+++|.|+|+|.-|+++|+.|+..|++|+++|.+.......... . ..+.........+. +.+..+|+|+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~----~-----~~~~i~~~~g~~~~-~~~~~~d~vV 74 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQP----L-----LLEGIEVELGSHDD-EDLAEFDLVV 74 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhh----h-----hccCceeecCccch-hccccCCEEE
Confidence 459999999999999999999999999999999765441000000 0 00000000011122 6678899998
Q ss_pred EeecCCccccCC-----------CCH-HHHccC-CCCcEEEEc-CCCCCCCHHHHHHHHHh--------CCCeEEEEecC
Q 019081 231 CCLSLNKQTAGI-----------VNK-SFLSSM-KKGSLLVNI-ARGGLLDYEAIAHYLEC--------GHLGGLGIDVA 288 (346)
Q Consensus 231 ~~lPlt~~T~~l-----------i~~-~~l~~m-k~gailIN~-sRg~~vd~~aL~~aL~~--------g~i~ga~lDV~ 288 (346)
.. |.-+-+.-+ ++. +.|-+. ++..++-=| +-|.--.+.-+.+.|++ |.|+..++|+.
T Consensus 75 ~S-PGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~ 153 (448)
T COG0771 75 KS-PGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELL 153 (448)
T ss_pred EC-CCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhh
Confidence 85 322222222 222 223332 233344444 45665555555555554 67888899999
Q ss_pred CCC
Q 019081 289 WTE 291 (346)
Q Consensus 289 ~~E 291 (346)
+++
T Consensus 154 ~~~ 156 (448)
T COG0771 154 EQA 156 (448)
T ss_pred ccc
Confidence 874
No 298
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.35 E-value=0.026 Score=54.31 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=32.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCcc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS 188 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~ 188 (346)
.+++|+|||.|.||..+|-.+...|. ++..+|++...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~ 43 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEK 43 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCch
Confidence 56799999999999999999987787 89999986543
No 299
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.30 E-value=0.029 Score=55.41 Aligned_cols=106 Identities=19% Similarity=0.257 Sum_probs=63.7
Q ss_pred CCCeEEEEec-CHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHH-HhhcCC
Q 019081 152 LGKTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFE-FASKAD 227 (346)
Q Consensus 152 ~g~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~e-ll~~aD 227 (346)
.-++|+|+|. |.+|+.+.+.|... +++|..+.+.......-. ...+ .+..... ...+++. .++++|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~-----~~~~-----~l~~~~~~~~~~~~~~~~~~~D 106 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG-----SVFP-----HLITQDLPNLVAVKDADFSDVD 106 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch-----hhCc-----cccCccccceecCCHHHhcCCC
Confidence 4558999998 99999999999876 778887765322110000 0000 0000000 1122222 258899
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHH
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH 273 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~ 273 (346)
+|++++|.. ...+....|+.|..+|+.|-.-..+..+.++
T Consensus 107 vVf~Alp~~------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 107 AVFCCLPHG------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred EEEEcCCHH------HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence 999999853 3445555567789999998666555544333
No 300
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.30 E-value=0.018 Score=46.34 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=52.0
Q ss_pred EEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCH---HH-HhhcCCEEE
Q 019081 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDI---FE-FASKADVVV 230 (346)
Q Consensus 156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l---~e-ll~~aDiV~ 230 (346)
+.|+|+|.+|+.+++.|+..+.+|+++|+++........ .... -.+...+. ++ =+.++|.|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------------EGVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------------TTSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------------cccccccccchhhhHHhhcCccccCEEE
Confidence 569999999999999999977799999987643211110 0111 11222233 22 257899999
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEE
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLV 258 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailI 258 (346)
+..+.. ...+.-...++.+-+...+|
T Consensus 68 ~~~~~d--~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 68 ILTDDD--EENLLIALLARELNPDIRII 93 (116)
T ss_dssp EESSSH--HHHHHHHHHHHHHTTTSEEE
T ss_pred EccCCH--HHHHHHHHHHHHHCCCCeEE
Confidence 998743 33333344455555555554
No 301
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.29 E-value=0.02 Score=56.46 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=36.0
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 185 (346)
|+......|.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 44323356899999999999999999999999998 68888875
No 302
>PRK05086 malate dehydrogenase; Provisional
Probab=95.28 E-value=0.063 Score=51.58 Aligned_cols=102 Identities=24% Similarity=0.231 Sum_probs=58.3
Q ss_pred CeEEEEec-CHHHHHHHHHHc---cCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCE
Q 019081 154 KTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV 228 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~---~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 228 (346)
++++|||. |.||+.++..+. ..+.++..+|++........+ + .+. .....-.+ ...++.+.+++||+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD----l--~~~--~~~~~i~~~~~~d~~~~l~~~Di 72 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD----L--SHI--PTAVKIKGFSGEDPTPALEGADV 72 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh----h--hcC--CCCceEEEeCCCCHHHHcCCCCE
Confidence 48999999 999999997763 456688999986432100000 0 000 00000000 12466778899999
Q ss_pred EEEeecCCccccCC-----------CCHHH---HccCCCCcEEEEcCCCC
Q 019081 229 VVCCLSLNKQTAGI-----------VNKSF---LSSMKKGSLLVNIARGG 264 (346)
Q Consensus 229 V~~~lPlt~~T~~l-----------i~~~~---l~~mk~gailIN~sRg~ 264 (346)
|++++-. +...++ +-++. ++.-.+.+++++++-.-
T Consensus 73 VIitaG~-~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 73 VLISAGV-ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred EEEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 9998754 222222 11222 33335788999996544
No 303
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.28 E-value=0.022 Score=56.08 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=44.5
Q ss_pred EEEEecCHHHHHHHHHHccCC-C-EEEEEcCCCccccccccccchhhhccccccccccc-cCCcCCHHHHhhcCCEEEEe
Q 019081 156 VFILGFGNIGVELAKRLRPFG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 156 vgIiG~G~IG~~vA~~l~~~G-~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiV~~~ 232 (346)
|+|+|.|.+|+.+++.|...+ . +|++.||+..+........ .... ...... .....++.++++++|+|+.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-----~~~~-~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-----LGDR-VEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTT-EEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-----cccc-eeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 689999999999999998665 5 8999999865421110000 0000 000000 01234588899999999999
Q ss_pred ecCC
Q 019081 233 LSLN 236 (346)
Q Consensus 233 lPlt 236 (346)
+|..
T Consensus 75 ~gp~ 78 (386)
T PF03435_consen 75 AGPF 78 (386)
T ss_dssp SSGG
T ss_pred Cccc
Confidence 9754
No 304
>PLN02342 ornithine carbamoyltransferase
Probab=95.27 E-value=0.41 Score=46.72 Aligned_cols=102 Identities=14% Similarity=0.020 Sum_probs=62.4
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCC
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKAD 227 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aD 227 (346)
.+.|++|+++|= .++.++++..+..||++|....|..-....... .. ...... ......++++.+++||
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~---~~------a~~~g~~~~~~~~d~~eav~~aD 261 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTV---EK------ARAAGISKIEITNDPAEAVKGAD 261 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHH---HH------HHHhCCCcEEEEcCHHHHhCCCC
Confidence 478999999997 467888888889999999988764321110000 00 000000 0112478999999999
Q ss_pred EEEEee---cCC-cc--------ccCCCCHHHHccCCCCcEEEEc
Q 019081 228 VVVCCL---SLN-KQ--------TAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 228 iV~~~l---Plt-~~--------T~~li~~~~l~~mk~gailIN~ 260 (346)
+|..-. -.. +. ....++++.++.+|++++|.-+
T Consensus 262 Vvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 262 VVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred EEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 998752 111 10 2255677777777777766555
No 305
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.21 E-value=0.035 Score=50.29 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=33.9
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS 185 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~ 185 (346)
...|..++|+|+|+|.+|..+|+.|...|.. +..+|..
T Consensus 23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4568999999999999999999999988884 8888875
No 306
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.16 E-value=0.054 Score=46.25 Aligned_cols=84 Identities=21% Similarity=0.223 Sum_probs=52.2
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
..|++|++||+= +.++++++..+.++.++|+++....... ... .....++++++||+|+
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~-------------~~~-----~~~~~~~~l~~aD~vi 67 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEP-------------GDV-----PDEDAEEILPWADVVI 67 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSC-------------T-E-----EGGGHHHHGGG-SEEE
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCC-------------CcC-----CHHHHHHHHccCCEEE
Confidence 478999999961 2378888888999999999764310000 000 2245678899999998
Q ss_pred EeecCCccccCCCC---HHHHccCCCCcEEEEcC
Q 019081 231 CCLSLNKQTAGIVN---KSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 231 ~~lPlt~~T~~li~---~~~l~~mk~gailIN~s 261 (346)
+.- .| ++| .+.+++.++++.+|=++
T Consensus 68 iTG----sT--lvN~Ti~~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 68 ITG----ST--LVNGTIDDILELARNAREVILYG 95 (147)
T ss_dssp EEC----HH--CCTTTHHHHHHHTTTSSEEEEES
T ss_pred EEe----ee--eecCCHHHHHHhCccCCeEEEEe
Confidence 842 22 444 34566667666666554
No 307
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.06 E-value=0.024 Score=56.81 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=45.5
Q ss_pred eEEEEecCHHHHHHHH---HH---ccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081 155 TVFILGFGNIGVELAK---RL---RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~---~l---~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 228 (346)
+|+|||.|.+|...+- .+ ...|.+|..||++.......... .....+.. ..........++.+.++.||+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~-~~~~~~~~---~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEIL-AKKIVEEL---GAPLKIEATTDRREALDGADF 77 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHH-HHHHHHhc---CCCeEEEEeCCHHHHhcCCCE
Confidence 7999999999998544 22 34477999999876432110000 00000000 000000124678899999999
Q ss_pred EEEeecC
Q 019081 229 VVCCLSL 235 (346)
Q Consensus 229 V~~~lPl 235 (346)
|+.++|.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999983
No 308
>PRK13529 malate dehydrogenase; Provisional
Probab=95.06 E-value=0.85 Score=47.00 Aligned_cols=229 Identities=18% Similarity=0.205 Sum_probs=136.9
Q ss_pred cCCCCeEEEEcCccCCc-cchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccc
Q 019081 73 RANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETL 151 (346)
Q Consensus 73 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l 151 (346)
..|+. +|+.-=-+-.+ +.+..-.+..|.+.|.-= ..+|--+++.+|+.+|-. |..|
T Consensus 237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi------QGTaaV~LAgll~A~r~~----------------g~~l 293 (563)
T PRK13529 237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI------QGTGAVTLAGLLAALKIT----------------GEPL 293 (563)
T ss_pred hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc------chHHHHHHHHHHHHHHHh----------------CCCh
Confidence 35675 66655444433 444444556788888632 456777888888888742 5789
Q ss_pred CCCeEEEEecCHHHHHHHHHHcc----CCC-------EEEEEcCCCcc---ccccccccchhhhccccccccccccCCcC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWAS---HSQVSCQSSALAVKNGIIDDLVDEKGCHE 217 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~----~G~-------~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (346)
.+.++.|+|.|..|-.+|+.+.. .|. +++.+|+..-- ...-......|+........+ .......
T Consensus 294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~-~~~~~~~ 372 (563)
T PRK13529 294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADW-DTEGDVI 372 (563)
T ss_pred hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccc-ccccCCC
Confidence 99999999999999999998875 587 78999976311 100000000011000000000 0000125
Q ss_pred CHHHHhhcC--CEEEEeecCCccccCCCCHHHHccCCC---CcEEEEcCCCCCCCHHHHHHHHH--hCC-CeEEEEecCC
Q 019081 218 DIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSLLVNIARGGLLDYEAIAHYLE--CGH-LGGLGIDVAW 289 (346)
Q Consensus 218 ~l~ell~~a--DiV~~~lPlt~~T~~li~~~~l~~mk~---gailIN~sRg~~vd~~aL~~aL~--~g~-i~ga~lDV~~ 289 (346)
+|.|+++.+ |+++-+- ...|.|+++.++.|.+ ..++.=.|......|-.-.+|.+ +|+ |.+.|-
T Consensus 373 ~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs---- 444 (563)
T PRK13529 373 SLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS---- 444 (563)
T ss_pred CHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC----
Confidence 899999988 9988642 2347999999999987 89999999888755544445555 454 443332
Q ss_pred CCCCCC---CC---CCCCCCceEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 019081 290 TEPFDP---ND---PILKFKNVLITPHVGGV-----TEHSYRSMAKVVGDVALQLHA 335 (346)
Q Consensus 290 ~EPl~~---~~---pL~~~~nviiTPH~a~~-----t~~~~~~~~~~~~~ni~~~~~ 335 (346)
|+++ +. .-=..-|+++-|=++-. .......|...+++.|-.+..
T Consensus 445 --pf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~ 499 (563)
T PRK13529 445 --PFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP 499 (563)
T ss_pred --CCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence 2221 11 11135788999977632 112224555566666555443
No 309
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.05 E-value=0.52 Score=45.27 Aligned_cols=66 Identities=20% Similarity=0.068 Sum_probs=47.5
Q ss_pred ccCCCeEEEEec---CHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc
Q 019081 150 TLLGKTVFILGF---GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 225 (346)
Q Consensus 150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 225 (346)
.+.|.+|+++|= +++.++++..+..||+ +|....|..-. +.. ..........++++.++.
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~---p~~-------------~~~~~~~~~~d~~ea~~~ 217 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLL---PDK-------------VGNDSIKKFTELKPSLLN 217 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccC---cCc-------------cccceEEEEcCHHHHhCC
Confidence 378999999998 5999999999999999 89887763211 000 000011124689999999
Q ss_pred CCEEEE
Q 019081 226 ADVVVC 231 (346)
Q Consensus 226 aDiV~~ 231 (346)
+|+|..
T Consensus 218 aDvvy~ 223 (310)
T PRK13814 218 SDVIVT 223 (310)
T ss_pred CCEEEE
Confidence 999976
No 310
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.04 E-value=0.033 Score=53.35 Aligned_cols=99 Identities=20% Similarity=0.149 Sum_probs=57.4
Q ss_pred eEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081 155 TVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
+|+|||.|.+|..+|..+...| .+|..+|++.......... ...... ..........+. +.+++||+|+++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~d-l~~~~~-----~~~~~~i~~~d~-~~l~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMD-LAHGTP-----FVKPVRIYAGDY-ADCKGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHH-HHcccc-----ccCCeEEeeCCH-HHhCCCCEEEEc
Confidence 7999999999999999998888 5899999875432110000 000000 000000011344 458999999999
Q ss_pred ecCCccccCC------------CC--HHHHccCCCCcEEEEcC
Q 019081 233 LSLNKQTAGI------------VN--KSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 233 lPlt~~T~~l------------i~--~~~l~~mk~gailIN~s 261 (346)
.+... ..++ +. .+.+....+.+++++++
T Consensus 75 a~~~~-~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 75 AGANQ-KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred cCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 88532 2222 10 12233345678888885
No 311
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.02 E-value=0.15 Score=47.39 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccC----CC-------EEEEEcC
Q 019081 116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR 184 (346)
Q Consensus 116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~----G~-------~V~~~d~ 184 (346)
+|=-+++-+++.+|-. +..|.+.++.|+|.|..|-.+|+.+... |. +++.+|+
T Consensus 4 TaaV~lAgll~Al~~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~ 67 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT----------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDS 67 (255)
T ss_dssp HHHHHHHHHHHHHHHH----------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEET
T ss_pred hHHHHHHHHHHHHHHh----------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEec
Confidence 4556777778777653 5779999999999999999999998877 87 4888887
Q ss_pred CCccccccccccchhhhccccccccccccCC---cCCHHHHhhcC--CEEEEeecCCccccCCCCHHHHccCCC---CcE
Q 019081 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGC---HEDIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSL 256 (346)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~a--DiV~~~lPlt~~T~~li~~~~l~~mk~---gai 256 (346)
..--.... .....+ + ..+...... ..+|.|+++.+ |+++-.- ...++|+++.++.|.+ ..+
T Consensus 68 ~Gll~~~r-~~l~~~--~----~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPI 136 (255)
T PF03949_consen 68 KGLLTDDR-EDLNPH--K----KPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPI 136 (255)
T ss_dssp TEEEBTTT-SSHSHH--H----HHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEE
T ss_pred cceEeccC-ccCChh--h----hhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCE
Confidence 53211000 000000 0 111222112 24899999999 9998752 2678999999999987 899
Q ss_pred EEEcCCCCCCCHHHHHHHHHhC
Q 019081 257 LVNIARGGLLDYEAIAHYLECG 278 (346)
Q Consensus 257 lIN~sRg~~vd~~aL~~aL~~g 278 (346)
+.=.|....-.|-.-.+|.+-+
T Consensus 137 IF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 137 IFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp EEE-SSSCGGSSS-HHHHHHTT
T ss_pred EEECCCCCCcccCCHHHHHhhC
Confidence 9999988775455555555543
No 312
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.97 E-value=0.012 Score=49.73 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=67.0
Q ss_pred EEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecC
Q 019081 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235 (346)
Q Consensus 156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPl 235 (346)
++|+|.|.||.-+|.+|+..|.+|..+.|.. .... ....++.+....-...........+..+....+|+|++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEA--IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHH--HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHh--hhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 6899999999999999988999999998865 2110 000011111000000000000011223466889999999874
Q ss_pred CccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 283 (346)
Q Consensus 236 t~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga 283 (346)
. ++...+.. .-...++++.++-.--| +-.++.|.+.+...++.++
T Consensus 78 ~-~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g 122 (151)
T PF02558_consen 78 Y-QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG 122 (151)
T ss_dssp G-GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE
T ss_pred c-chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE
Confidence 3 33333332 22334556666655444 5556777777655566544
No 313
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.96 E-value=0.074 Score=58.65 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=66.9
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccc---c--cccc-----------cchhhhccccccccccc-
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS---Q--VSCQ-----------SSALAVKNGIIDDLVDE- 212 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~---~--~~~~-----------~~~~~~~~~~~~~~~~~- 212 (346)
.+.-.++.|+|.|++|+..++.+..+|++ . .++..-+.. . .... .....+..+.....++.
T Consensus 200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 44567899999999999999999999887 2 222110000 0 0000 00000000000000000
Q ss_pred -cC------CcCCHHHHhhcCCEEEEeecCCccccCCCCHH-HHccCCCCc----EEEEcC
Q 019081 213 -KG------CHEDIFEFASKADVVVCCLSLNKQTAGIVNKS-FLSSMKKGS----LLVNIA 261 (346)
Q Consensus 213 -~~------~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~-~l~~mk~ga----ilIN~s 261 (346)
+. ...-+++.++.+|+|+.++...+.+..++.++ ..+.||+|. +|+++|
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00 01114578899999999998888899999998 777899998 898886
No 314
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.94 E-value=0.021 Score=57.11 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=47.8
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHH-hhcCCEEEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF-ASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el-l~~aDiV~~ 231 (346)
+++.|+|+|.+|+.+++.|...|++|+++|++.......... .++ .....-. ....++++ +.++|.|++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-~~~--------~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-LDV--------RTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-cCE--------EEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 378999999999999999999999999999865432110000 000 0000000 12345555 788999999
Q ss_pred eecCC
Q 019081 232 CLSLN 236 (346)
Q Consensus 232 ~lPlt 236 (346)
+++..
T Consensus 72 ~~~~~ 76 (453)
T PRK09496 72 VTDSD 76 (453)
T ss_pred ecCCh
Confidence 98753
No 315
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.89 E-value=0.031 Score=58.44 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCH---HHH-hhcCCE
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI---FEF-ASKADV 228 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDi 228 (346)
...+.|+|+|++|+.+++.|...|.+++++|.++........ .+ ..--++...+. +++ +++||.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g----------~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--YG----------YKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--CC----------CeEEEeeCCCHHHHHhcCCccCCE
Confidence 357899999999999999999999999999987653211100 00 00011222232 222 578999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg 263 (346)
++++.+..+.+..++ ...+++.|...+|-.+|.
T Consensus 468 vv~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 468 IVITCNEPEDTMKIV--ELCQQHFPHLHILARARG 500 (601)
T ss_pred EEEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeCC
Confidence 999998655544432 234445566666554443
No 316
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.88 E-value=0.031 Score=53.18 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=65.4
Q ss_pred EEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhcCCEEEE
Q 019081 156 VFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKADVVVC 231 (346)
Q Consensus 156 vgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aDiV~~ 231 (346)
|+|||.|.+|..+|..+...|. +|+.+|++......... .+. . . ........ ...+.+ .+++||+|++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~---dl~--~-~-~~~~~~~~~I~~t~d~~-~l~dADiVIi 72 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKAL---DIS--Q-A-APILGSDTKVTGTNDYE-DIAGSDVVVI 72 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHH---HHH--H-h-hhhcCCCeEEEEcCCHH-HhCCCCEEEE
Confidence 5899999999999998875554 99999987542110000 000 0 0 00000001 123554 4899999999
Q ss_pred eecCCccccCCC-------C-------HHHHccCCCCcEEEEcCCCCCCCHHHHHHHH--HhCCCeEEE--Ee
Q 019081 232 CLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL--ECGHLGGLG--ID 286 (346)
Q Consensus 232 ~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sRg~~vd~~aL~~aL--~~g~i~ga~--lD 286 (346)
+.. ++...+.- | .+.+....+.+++|+++-..=+-...+.+.. ...++.|.+ ||
T Consensus 73 t~g-~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~ld 144 (300)
T cd01339 73 TAG-IPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLD 144 (300)
T ss_pred ecC-CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEecchHH
Confidence 774 22222210 0 1123444577888888733323333444432 223566666 55
No 317
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.82 E-value=0.13 Score=50.06 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=63.7
Q ss_pred eEEEEecCHHHHHHHHHHccC----------CCEEEEE-cCCCcc---ccccccccchhhhccccccccccccCCcCCHH
Q 019081 155 TVFILGFGNIGVELAKRLRPF----------GVKIIAT-KRSWAS---HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF 220 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~----------G~~V~~~-d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (346)
+|||+|+|.||+.+++.+... +++|.++ |++..- .......+..+.-..+.+.. ........+++
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ 82 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD-YPEGGGEISGL 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc-CccccccCCHH
Confidence 799999999999999988643 5776654 542110 00000000000000000000 00000123788
Q ss_pred HHh--hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHHHHhCCC
Q 019081 221 EFA--SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHL 280 (346)
Q Consensus 221 ell--~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i 280 (346)
+++ .+.|+|+.++|....+...--.-....++.|.-+|-..-+.+ ...++|.++.++...
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 888 467999999986543322111122344566665655433333 245677777766544
No 318
>PLN02527 aspartate carbamoyltransferase
Probab=94.81 E-value=0.16 Score=48.70 Aligned_cols=98 Identities=26% Similarity=0.244 Sum_probs=60.1
Q ss_pred ccCCCeEEEEecC---HHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHH
Q 019081 150 TLLGKTVFILGFG---NIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE 221 (346)
Q Consensus 150 ~l~g~tvgIiG~G---~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e 221 (346)
.+.|++|+++|-+ ++.++++..+..| |++|....|..-..+.. + .+.....+ ...++++
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~------------~-~~~~~~~g~~~~~~~d~~~ 214 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDD------------I-KDYLTSKGVEWEESSDLME 214 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHH------------H-HHHHHHcCCEEEEEcCHHH
Confidence 3789999999976 6889999988877 99998877633111100 0 00111111 2468999
Q ss_pred HhhcCCEEEEeecCCc------c------ccCCCCHHHHccCCCCcEEEEc
Q 019081 222 FASKADVVVCCLSLNK------Q------TAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 222 ll~~aDiV~~~lPlt~------~------T~~li~~~~l~~mk~gailIN~ 260 (346)
.+++||+|....--.+ . -...++++.++..|++++|.-+
T Consensus 215 a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 215 VASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred HhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 9999999988431100 0 1244555666666666665544
No 319
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.79 E-value=0.33 Score=46.09 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=72.9
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
|++++|||--.=-..+++.|...|++|..|.-.... ..+.........++.++++|+|++-
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~p 61 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-------------------DGFTGAVKCELLELDLTTLDVVILP 61 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-------------------cccccceeecchhhhhccCCEEEEC
Confidence 689999999999999999999999997766432111 0011000123455568999999999
Q ss_pred ecCCcccc----------CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081 233 LSLNKQTA----------GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289 (346)
Q Consensus 233 lPlt~~T~----------~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 289 (346)
+|.+.+.. --++++.++.|+++++ +-++ ++..++-++.++..|. ..|.++
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 62 VPGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred CccccCCceEecccccCCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence 99765421 1257889999998664 4443 4455666567777664 344433
No 320
>PRK11579 putative oxidoreductase; Provisional
Probab=94.79 E-value=0.055 Score=52.49 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=42.3
Q ss_pred CeEEEEecCHHHHH-HHHHHcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081 154 KTVFILGFGNIGVE-LAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV 228 (346)
Q Consensus 154 ~tvgIiG~G~IG~~-vA~~l~~-~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi 228 (346)
-+|||||+|.||+. .+..++. -++++.+ +|++..+.. . .. .....+.+++++++ +.|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~-------------~~-~~~~~~~~~~ell~~~~vD~ 67 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---A-------------DW-PTVTVVSEPQHLFNDPNIDL 67 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---h-------------hC-CCCceeCCHHHHhcCCCCCE
Confidence 38999999999985 4565543 4788765 565432210 0 00 00013478999995 5799
Q ss_pred EEEeecCC
Q 019081 229 VVCCLSLN 236 (346)
Q Consensus 229 V~~~lPlt 236 (346)
|++++|..
T Consensus 68 V~I~tp~~ 75 (346)
T PRK11579 68 IVIPTPND 75 (346)
T ss_pred EEEcCCcH
Confidence 99999853
No 321
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.77 E-value=0.025 Score=58.55 Aligned_cols=92 Identities=12% Similarity=0.215 Sum_probs=55.2
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHH-hhcCCEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADVV 229 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV 229 (346)
..+-|+|+|++|+.+|+.|+..|.+|+++|.+++......+ .++ ..-.+...+ ++++ ++++|.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--~g~----------~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--RGI----------RAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--CCC----------eEEEcCCCCHHHHHhcCccccCEE
Confidence 45779999999999999999999999999987543211100 000 001112222 2221 4689999
Q ss_pred EEeecCCccccCCCCHHHHccCCCCcEEEE
Q 019081 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 259 (346)
Q Consensus 230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN 259 (346)
++.++..+++..++-. ...+.+...+|-
T Consensus 486 iv~~~~~~~~~~iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 486 LLTIPNGYEAGEIVAS--AREKRPDIEIIA 513 (558)
T ss_pred EEEcCChHHHHHHHHH--HHHHCCCCeEEE
Confidence 9998865554444322 233345555553
No 322
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=94.76 E-value=0.46 Score=45.63 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=48.8
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK 225 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~ 225 (346)
.+.|++|++||- +++.++++..+..||++|.+..|..-.. ..... . .+.....+ ...++++.++.
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~-~~~~~--~--------~~~~~~~g~i~~~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKE-NIHAQ--T--------VERAKKKGTLSWEMNLHKAVSH 218 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccH-HHHHH--H--------HHHHHhcCCeEEEeCHHHHhCC
Confidence 478999999998 7999999999999999999987643110 00000 0 00001111 13689999999
Q ss_pred CCEEEEe
Q 019081 226 ADVVVCC 232 (346)
Q Consensus 226 aDiV~~~ 232 (346)
||+|..-
T Consensus 219 aDvvy~d 225 (311)
T PRK14804 219 ADYVYTD 225 (311)
T ss_pred CCEEEee
Confidence 9999884
No 323
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.76 E-value=0.093 Score=50.51 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=58.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh---c
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS---K 225 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~---~ 225 (346)
.|++|.|+|.|.+|...++.++..|+ +|++.+++..+...... -.++... ...++.++.. .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-------------lGa~~vi~~~~~~~~~~~~~~g~ 235 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-------------MGADKLVNPQNDDLDHYKAEKGY 235 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-------------cCCcEEecCCcccHHHHhccCCC
Confidence 58899999999999999999999999 58888876543211000 0000000 1123334332 2
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
.|+|+-++... . .-...++.+++|..+|.++.
T Consensus 236 ~D~vid~~G~~-~----~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 236 FDVSFEVSGHP-S----SINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCEEEECCCCH-H----HHHHHHHHhhcCCEEEEEcc
Confidence 68887776421 1 12356677888888888874
No 324
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.73 E-value=0.05 Score=55.02 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=60.9
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 227 (346)
..+|+|++|.|||.|.++..=++.|..+|++|+++.+...+.... +. ..+.+ .+... .-.++.+..++
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~------l~-~~~~i-~~~~~----~~~~~dl~~~~ 74 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTA------WA-DAGML-TLVEG----PFDESLLDTCW 74 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH------HH-hCCCE-EEEeC----CCChHHhCCCE
Confidence 467999999999999999998899999999999997754331100 00 00000 11111 11234567888
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s 261 (346)
+|+.++... -+|++.....+...+++|++
T Consensus 75 lv~~at~d~-----~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 75 LAIAATDDD-----AVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EEEECCCCH-----HHhHHHHHHHHHcCcEEEEC
Confidence 887776432 25666666666666777763
No 325
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=94.70 E-value=0.32 Score=47.62 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=46.2
Q ss_pred ccCCCeEEEEecC--------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcC
Q 019081 150 TLLGKTVFILGFG--------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE 217 (346)
Q Consensus 150 ~l~g~tvgIiG~G--------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 217 (346)
.|.|+||+|+|.| ++.++++..+..||++|....|..-...... ...+ .....+.+ ...
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~---~~~a------~~~~~~~g~~~~~~~ 237 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEV---IEVA------KKNAAENGGKFNIVN 237 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHH---HHHH------HHHHHHcCCeEEEEc
Confidence 4789999999853 4557788888899999999876421110000 0000 00011111 247
Q ss_pred CHHHHhhcCCEEEEe
Q 019081 218 DIFEFASKADVVVCC 232 (346)
Q Consensus 218 ~l~ell~~aDiV~~~ 232 (346)
++++.++++|+|..-
T Consensus 238 d~~ea~~~aDvvyt~ 252 (357)
T TIGR03316 238 SMDEAFKDADIVYPK 252 (357)
T ss_pred CHHHHhCCCCEEEEC
Confidence 899999999999875
No 326
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.67 E-value=0.022 Score=50.95 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=37.3
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
|+......|..++|.|+|+|.+|..+++.|...|+ ++..+|...
T Consensus 11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 65444567999999999999999999999999998 588888653
No 327
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=94.64 E-value=0.32 Score=47.21 Aligned_cols=74 Identities=19% Similarity=0.121 Sum_probs=48.8
Q ss_pred ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 223 (346)
Q Consensus 150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 223 (346)
.+.|.+|++||-+ ++.++++..+..||+++.+..|..-......- . ...+.....+ ...++++.+
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~---~------~~~~~~~~~g~~i~~~~d~~ea~ 223 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALV---T------ECRALAQKNGGNITLTEDIAEGV 223 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHH---H------HHHHHHHHcCCeEEEEcCHHHHh
Confidence 5889999999976 68999999999999999988764321110000 0 0000011111 247899999
Q ss_pred hcCCEEEEe
Q 019081 224 SKADVVVCC 232 (346)
Q Consensus 224 ~~aDiV~~~ 232 (346)
+++|+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999874
No 328
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.60 E-value=0.07 Score=51.91 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=25.1
Q ss_pred eEEEEecCHHHHHHHHHHcc-CCCEEEEEcC
Q 019081 155 TVFILGFGNIGVELAKRLRP-FGVKIIATKR 184 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d~ 184 (346)
+|||+|+|+||+.+++.+.. -++++.+...
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d 33 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAK 33 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence 79999999999999998764 4788877543
No 329
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.59 E-value=0.13 Score=51.44 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=52.7
Q ss_pred ccccCCCeEEEEec----------CHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCc
Q 019081 148 GETLLGKTVFILGF----------GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 216 (346)
Q Consensus 148 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (346)
+.++.|++|+|+|+ ..-+..+++.|+..| .+|.+||+...... .........
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~-----------------~~~~~~~~~ 377 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLP-----------------KKLDGLVTL 377 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchh-----------------hhccCceee
Confidence 46789999999998 456789999999996 99999998643210 000000123
Q ss_pred CCHHHHhhcCCEEEEeecCC
Q 019081 217 EDIFEFASKADVVVCCLSLN 236 (346)
Q Consensus 217 ~~l~ell~~aDiV~~~lPlt 236 (346)
.++++.++.||+|+++.+..
T Consensus 378 ~~~~~~~~~ad~vvi~t~~~ 397 (415)
T PRK11064 378 VSLDEALATADVLVMLVDHS 397 (415)
T ss_pred CCHHHHHhCCCEEEECCCCH
Confidence 57889999999999998753
No 330
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.55 E-value=0.063 Score=49.03 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=34.9
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.-.+.|++|.|||.|.++..=++.|..+|++|+++.+...
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 3467799999999999999988889899999999987654
No 331
>PRK08223 hypothetical protein; Validated
Probab=94.54 E-value=0.078 Score=50.24 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.1
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 185 (346)
...|+.++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 356899999999999999999999998888 57777754
No 332
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.51 E-value=0.13 Score=48.49 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 188 (346)
++++.|+|.|..+++++..|+..|+ +|.+++|+..+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~ 158 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKT 158 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence 4689999999999999999999998 59999997643
No 333
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.47 E-value=0.089 Score=51.19 Aligned_cols=98 Identities=26% Similarity=0.223 Sum_probs=54.8
Q ss_pred CeEEEEec-CHHHHHHHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccc-cCCcCCHHH-HhhcCCE
Q 019081 154 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFE-FASKADV 228 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~e-ll~~aDi 228 (346)
.+|+|+|. |.+|+.+++.+... ++++.. .++..... .... .+. ..... .....++++ ...++|+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~-~l~~---~~~-------~~~~~~~~~~~~~~~~~~~~vD~ 71 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGK-PLSD---VHP-------HLRGLVDLVLEPLDPEILAGADV 71 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCc-chHH---hCc-------ccccccCceeecCCHHHhcCCCE
Confidence 58999997 99999999999876 678655 44322110 0000 000 00000 001222222 4578999
Q ss_pred EEEeecCCccccCCCCHHHHcc-CCCCcEEEEcCCCCCCCH
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIARGGLLDY 268 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~-mk~gailIN~sRg~~vd~ 268 (346)
|++|+|.... .+.... .+.|..+|+.|-.=-.+.
T Consensus 72 Vf~alP~~~~------~~~v~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 72 VFLALPHGVS------MDLAPQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred EEECCCcHHH------HHHHHHHHhCCCEEEECCcccCCCC
Confidence 9999985321 222222 357899999984443433
No 334
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.47 E-value=0.12 Score=49.42 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=57.6
Q ss_pred EEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccc--cC---CcCCHHHHhhcCCE
Q 019081 156 VFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KG---CHEDIFEFASKADV 228 (346)
Q Consensus 156 vgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~ell~~aDi 228 (346)
++|||.|.+|..+|..+...| -++..+|++........... .+.... .. ...+ .+.+++||+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL----------~~~~~~~~~~~i~~~~~-~~~l~~aDi 69 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDL----------SHASAFLATGTIVRGGD-YADAADADI 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhH----------HHhccccCCCeEEECCC-HHHhCCCCE
Confidence 589999999999999988777 58999998654321111000 011100 00 1133 467899999
Q ss_pred EEEeecCCccccCCC-------C-------HHHHccCCCCcEEEEcC
Q 019081 229 VVCCLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 229 V~~~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~s 261 (346)
|+++... +...++- | ...++...|++++|+++
T Consensus 70 VIitag~-p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 70 VVITAGA-PRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred EEEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 9998863 3333321 1 12334445899999997
No 335
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.38 E-value=0.19 Score=50.40 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=61.9
Q ss_pred ccccCCCeEEEEec----------CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcC
Q 019081 148 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE 217 (346)
Q Consensus 148 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (346)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+||+....... ....+ ..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~------------------~~~~~-~~ 369 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEV------------------RREYG-II 369 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHH------------------HHhcC-cc
Confidence 45689999999999 456889999999999999999986432100 00001 11
Q ss_pred CHHH-HhhcCCEEEEeecCCccccCCCCHHHHc-cCCCCcEEEEcCCCCC
Q 019081 218 DIFE-FASKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGL 265 (346)
Q Consensus 218 ~l~e-ll~~aDiV~~~lPlt~~T~~li~~~~l~-~mk~gailIN~sRg~~ 265 (346)
.+++ .+..||+|+++..-.+ -+. ++-+.+. .||...++|++ |+-+
T Consensus 370 ~~~~~~~~~ad~vvi~t~h~~-f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 370 PVSEVKSSHYDAIIVAVGHQQ-FKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred cchhhhhcCCCEEEEccCCHH-hhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 1222 3678999999987432 222 4545444 45545688884 5554
No 336
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=94.35 E-value=0.41 Score=46.42 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=61.7
Q ss_pred ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 223 (346)
Q Consensus 150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 223 (346)
.+.|++|++||-+ ++.++++..+..||++|...-|..-....... .. ++......+ ...++++.+
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~---~~------~~~~~~~~g~~~~~~~d~~ea~ 222 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELL---NK------CKEIAAETGGKITITDDIDEGV 222 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHH---HH------HHHHHHHcCCeEEEEcCHHHHh
Confidence 4789999999975 88999999999999999988764221110000 00 000001111 247899999
Q ss_pred hcCCEEEEeecCC--c-----------cccCCCCHHHHccCC-CCcEEEEc
Q 019081 224 SKADVVVCCLSLN--K-----------QTAGIVNKSFLSSMK-KGSLLVNI 260 (346)
Q Consensus 224 ~~aDiV~~~lPlt--~-----------~T~~li~~~~l~~mk-~gailIN~ 260 (346)
++||+|..-.=.. . .-...++++.++.+| |+++|.-+
T Consensus 223 ~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332)
T PRK04284 223 KGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332)
T ss_pred CCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence 9999998842100 0 023445666666664 46666555
No 337
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=94.22 E-value=1.1 Score=43.40 Aligned_cols=74 Identities=15% Similarity=-0.004 Sum_probs=46.2
Q ss_pred c-CCCeEEEEecC-------HHHHHHHHHHccCCCEEEEEcC-CCccccccccccchhhhccccccccccccC----CcC
Q 019081 151 L-LGKTVFILGFG-------NIGVELAKRLRPFGVKIIATKR-SWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE 217 (346)
Q Consensus 151 l-~g~tvgIiG~G-------~IG~~vA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 217 (346)
+ .|++|+|+|.| ++.++++..+..||++|.+..| ..-........ . ..+.....+ ...
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~-~--------~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMD-W--------AEQNAAESGGSLTVSH 236 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHH-H--------HHHHHHHcCCeEEEEc
Confidence 6 78999887643 7888999999999999999876 32111000000 0 000011111 247
Q ss_pred CHHHHhhcCCEEEEee
Q 019081 218 DIFEFASKADVVVCCL 233 (346)
Q Consensus 218 ~l~ell~~aDiV~~~l 233 (346)
++++.+++||+|..-.
T Consensus 237 d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 237 DIDSAYAGADVVYAKS 252 (335)
T ss_pred CHHHHhCCCCEEEece
Confidence 8999999999997743
No 338
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.14 E-value=0.058 Score=56.66 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=57.1
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH----hhcCCE
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----ASKADV 228 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi 228 (346)
..+|-|+|+|++|+.+++.|...|.+++++|.++.......+ .+ ..--++...+.+-+ ++++|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g----------~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--FG----------MKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--cC----------CeEEEEeCCCHHHHHhcCCCcCCE
Confidence 467999999999999999999999999999987653211100 00 00011222333222 468999
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEE
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 259 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN 259 (346)
|+++++..+.+..+ -...+++.|+..++-
T Consensus 468 vvv~~~d~~~n~~i--~~~ar~~~p~~~iia 496 (621)
T PRK03562 468 LINAIDDPQTSLQL--VELVKEHFPHLQIIA 496 (621)
T ss_pred EEEEeCCHHHHHHH--HHHHHHhCCCCeEEE
Confidence 99999765544333 233444555655544
No 339
>PRK08328 hypothetical protein; Provisional
Probab=94.13 E-value=0.055 Score=49.68 Aligned_cols=44 Identities=30% Similarity=0.442 Sum_probs=36.4
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
|+......|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 54433467899999999999999999999999998 588888643
No 340
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.12 E-value=0.063 Score=53.82 Aligned_cols=37 Identities=41% Similarity=0.602 Sum_probs=34.4
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.+.+|++.|+|.|.+|.++|+.|...|++|+++|+..
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999999864
No 341
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.07 E-value=0.074 Score=53.24 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=34.0
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
++.||++.|+|.|.+|.++|+.|+..|++|.+.|+..
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3678999999999999999999999999999999754
No 342
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.01 E-value=0.073 Score=46.66 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=28.4
Q ss_pred eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
+|+|+|+|.+|..+++.|...|+ ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999998898 499988754
No 343
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.00 E-value=0.93 Score=44.00 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=62.2
Q ss_pred ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 223 (346)
Q Consensus 150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 223 (346)
.+.|.+|+++|-+ ++.++++..+..+|++|.+..|..-........ . +.+.....+ ...++++.+
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~--------~-~~~~~~~~g~~~~~~~d~~~a~ 223 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVA--------E-CSALAQKHGGKITLTEDIAAGV 223 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHH--------H-HHHHHHHcCCeEEEEcCHHHHh
Confidence 5789999999975 789999999999999999887643111000000 0 000111111 237899999
Q ss_pred hcCCEEEEeec----C-Cc--------cccCCCCHHHHccC-CCCcEEEEc
Q 019081 224 SKADVVVCCLS----L-NK--------QTAGIVNKSFLSSM-KKGSLLVNI 260 (346)
Q Consensus 224 ~~aDiV~~~lP----l-t~--------~T~~li~~~~l~~m-k~gailIN~ 260 (346)
+++|+|..-.= . .+ --..-++.+.++.. |++++|.-+
T Consensus 224 ~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc 274 (334)
T PRK12562 224 KGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC 274 (334)
T ss_pred CCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence 99999987430 0 00 01344566666664 566666655
No 344
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.99 E-value=0.099 Score=39.30 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=30.1
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
++.|||.|.+|-.+|..++.+|.+|+.+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 578999999999999999999999999988654
No 345
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.99 E-value=0.12 Score=52.27 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=63.2
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
-.|++|+|+|+|.-|+++|+.|+. |++|+++|........ . ............-.+.+.++|+|+
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~d~vV 68 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDI--F------------EELYSKNAIAALSDSRWQNLDKIV 68 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHH--H------------HhhhcCceeccCChhHhhCCCEEE
Confidence 358899999999999999999996 9999999954322100 0 000000000011234567899887
Q ss_pred Eee--cCCcc--------ccCCCCHHHH--ccCCCC-cEEEEcCCCCCCCHHHHHHHHHh
Q 019081 231 CCL--SLNKQ--------TAGIVNKSFL--SSMKKG-SLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 231 ~~l--Plt~~--------T~~li~~~~l--~~mk~g-ailIN~sRg~~vd~~aL~~aL~~ 277 (346)
..- |.+.. ...++++-.| ..+++. .+=|-=+.|..-...=|...|+.
T Consensus 69 ~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 69 LSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred ECCCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 743 22211 1124444433 233322 33344457877777777777775
No 346
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.97 E-value=0.073 Score=50.97 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=44.6
Q ss_pred CeEEEEecCHHHH-HHHHHHccCC--CEE-EEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhc-
Q 019081 154 KTVFILGFGNIGV-ELAKRLRPFG--VKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK- 225 (346)
Q Consensus 154 ~tvgIiG~G~IG~-~vA~~l~~~G--~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~- 225 (346)
.++||||+|.+++ ..+..++..+ +++ -++|++..+.. .....++ .+.+++++++.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~ 66 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAE-----------------AFAEEFGIAKAYTDLEELLADP 66 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCC
Confidence 4899999997775 4777777765 454 45577654321 1122222 35789999976
Q ss_pred -CCEEEEeecCC
Q 019081 226 -ADVVVCCLSLN 236 (346)
Q Consensus 226 -aDiV~~~lPlt 236 (346)
-|+|++++|..
T Consensus 67 ~iD~V~Iatp~~ 78 (342)
T COG0673 67 DIDAVYIATPNA 78 (342)
T ss_pred CCCEEEEcCCCh
Confidence 59999999954
No 347
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.95 E-value=0.066 Score=51.78 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~ 185 (346)
.|++|.|+|.|.||...++.++..|++|++++++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 5789999999999999999999999999999874
No 348
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.93 E-value=0.24 Score=47.47 Aligned_cols=124 Identities=18% Similarity=0.246 Sum_probs=65.1
Q ss_pred CeEEEEec-CHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEE
Q 019081 154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV 229 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV 229 (346)
++|+|+|. |.+|..++..+...|. +|+.+|+........... ....+........ ......+. +.+++||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~---~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLR---LDIYDALAAAGIDAEIKISSDL-SDVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECccccccccccc---chhhhchhccCCCcEEEECCCH-HHhCCCCEE
Confidence 47999998 9999999999987775 599999843111000000 0000000000000 00011344 459999999
Q ss_pred EEeecCCccccCCC-------C-------HHHHccCCCCcEEEEcCCCCCCCHHHHHHH----HHhCCCeEEE
Q 019081 230 VCCLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIARGGLLDYEAIAHY----LECGHLGGLG 284 (346)
Q Consensus 230 ~~~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sRg~~vd~~aL~~a----L~~g~i~ga~ 284 (346)
+++... +...+.- | ...+....+++++|+++ ..+|.-..+-. +..+++-|.+
T Consensus 77 iitag~-p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g 146 (309)
T cd05294 77 IITAGV-PRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG 146 (309)
T ss_pred EEecCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence 998863 2222211 0 11244445678888886 55554432221 3345666653
No 349
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.87 E-value=0.27 Score=44.54 Aligned_cols=98 Identities=28% Similarity=0.369 Sum_probs=58.3
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH-----hhc
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-----ASK 225 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~ 225 (346)
..|++|.|+|.|.+|+.+++.++..|.+|++.+++........ . + + .....+. ...+..+. -..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~---~----g-~~~~~~~--~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK-E---L----G-ADHVIDY--KEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-H---h----C-CceeccC--CcCCHHHHHHHhcCCC
Confidence 3578999999999999999999999999999987643210000 0 0 0 0000000 00111111 135
Q ss_pred CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~ 264 (346)
.|+++.+++... .-...++.|+++..+++.+...
T Consensus 202 ~d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 202 ADVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred CCEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence 788887765321 1244567788888888876554
No 350
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.86 E-value=0.1 Score=52.20 Aligned_cols=38 Identities=37% Similarity=0.336 Sum_probs=34.0
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+..+++.|+|+|.+|+.+++.|...|.+|+++|+++.
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 34578999999999999999999999999999998754
No 351
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.82 E-value=0.1 Score=49.57 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS 185 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~ 185 (346)
.|+++.|+|.|.||...++.++.+|++ |++.|++
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~ 178 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN 178 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 477899999999999999999999998 5556654
No 352
>PRK04148 hypothetical protein; Provisional
Probab=93.79 E-value=0.089 Score=44.19 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=31.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.++++..||+| -|..+|+.|+..|++|+++|.++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 46789999999 999999999999999999998765
No 353
>PLN00106 malate dehydrogenase
Probab=93.77 E-value=0.22 Score=48.12 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=61.1
Q ss_pred CCCeEEEEec-CHHHHHHHHHHcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081 152 LGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228 (346)
Q Consensus 152 ~g~tvgIiG~-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 228 (346)
..++|+|+|. |+||..+|..|.. +.-++..+|.+... ....+. ... .............++.+.+++||+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~Dl--~~~----~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAADV--SHI----NTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEchh--hhC----CcCceEEEEeCCCCHHHHcCCCCE
Confidence 3469999999 9999999998874 44489999986621 111000 000 000000000123466789999999
Q ss_pred EEEeecCCccccCC-----C--C----H---HHHccCCCCcEEEEcCCCCC
Q 019081 229 VVCCLSLNKQTAGI-----V--N----K---SFLSSMKKGSLLVNIARGGL 265 (346)
Q Consensus 229 V~~~lPlt~~T~~l-----i--~----~---~~l~~mk~gailIN~sRg~~ 265 (346)
|+++.-. +...+. + | + +.+....+.+++|+++-.--
T Consensus 90 VVitAG~-~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 90 VIIPAGV-PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred EEEeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 9987543 221121 1 1 1 22334458899999975543
No 354
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.76 E-value=1.1 Score=46.46 Aligned_cols=200 Identities=16% Similarity=0.178 Sum_probs=121.3
Q ss_pred hCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHcc--
Q 019081 97 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP-- 174 (346)
Q Consensus 97 ~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~-- 174 (346)
+..|.+.|.-= ..+|-.+++.+|+.+|-. +..|.+.++.|+|.|..|-.+|+.+..
T Consensus 287 r~~i~~FnDDi------QGTaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAgigia~ll~~~~ 344 (581)
T PLN03129 287 RTTHLCFNDDI------QGTAAVALAGLLAALRAT----------------GGDLADQRILFAGAGEAGTGIAELIALAM 344 (581)
T ss_pred ccCCCEecccc------chHHHHHHHHHHHHHHHh----------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence 56888888632 456777888888888742 578999999999999999999998876
Q ss_pred ---CCC-------EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCEEEEeecCCccccCC
Q 019081 175 ---FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTAGI 242 (346)
Q Consensus 175 ---~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~~~lPlt~~T~~l 242 (346)
.|. +++.+|+..--..........+ + ..++.......+|.|+++. .|+++-.- ...|+
T Consensus 345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~--k----~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~ 414 (581)
T PLN03129 345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPF--K----KPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGT 414 (581)
T ss_pred HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHH--H----HHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCC
Confidence 476 7888887642110000000000 0 0111111124689999998 89988742 23479
Q ss_pred CCHHHHccCC---CCcEEEEcCCCCCCCHHHHHHHHH--hCC-CeEEEEecCCCCCCCC---CCC---CCCCCceEEccC
Q 019081 243 VNKSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLE--CGH-LGGLGIDVAWTEPFDP---NDP---ILKFKNVLITPH 310 (346)
Q Consensus 243 i~~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EPl~~---~~p---L~~~~nviiTPH 310 (346)
|+++.++.|. +..++.=.|...---|-.-.+|.+ +|+ |.+.| -|+++ +.. -=..-|+++-|=
T Consensus 415 Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtG------SPf~pv~~~Gr~~~p~Q~NN~~iFPG 488 (581)
T PLN03129 415 FTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASG------SPFDPVEYNGKTFHPGQANNAYIFPG 488 (581)
T ss_pred CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeC------CCCCCeeeCCeeecCccccceeeccc
Confidence 9999999995 889999988776433333333333 355 43332 23222 111 113568888887
Q ss_pred CCCC-----cHHHHHHHHHHHHHHHHHHH
Q 019081 311 VGGV-----TEHSYRSMAKVVGDVALQLH 334 (346)
Q Consensus 311 ~a~~-----t~~~~~~~~~~~~~ni~~~~ 334 (346)
++-. .......|...+++.|-.+.
T Consensus 489 iglGal~~~a~~Itd~m~~aAA~aLA~~v 517 (581)
T PLN03129 489 IGLGALLSGAIRVTDDMLLAAAEALAAQV 517 (581)
T ss_pred hhhHHHhcCCcCCCHHHHHHHHHHHHHhC
Confidence 7632 11222455555555555544
No 355
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.71 E-value=0.063 Score=59.19 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=45.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHccC-CCE-------------EEEEcCCCccccccccccchhhhccccccccccc-cCCc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPF-GVK-------------IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCH 216 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~-G~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (346)
..|+|+|||.|.||+..|+.|... +.+ |.+.|++.......... + ++ ...... ....
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~---~--~~---~~~v~lDv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEG---I--EN---AEAVQLDVSDS 639 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHh---c--CC---CceEEeecCCH
Confidence 477999999999999999999653 333 78888765432110000 0 00 000000 0112
Q ss_pred CCHHHHhhcCCEEEEeecCC
Q 019081 217 EDIFEFASKADVVVCCLSLN 236 (346)
Q Consensus 217 ~~l~ell~~aDiV~~~lPlt 236 (346)
.++.++++++|+|++++|..
T Consensus 640 e~L~~~v~~~DaVIsalP~~ 659 (1042)
T PLN02819 640 ESLLKYVSQVDVVISLLPAS 659 (1042)
T ss_pred HHHHHhhcCCCEEEECCCch
Confidence 33445557899999999963
No 356
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.70 E-value=0.065 Score=44.63 Aligned_cols=35 Identities=40% Similarity=0.582 Sum_probs=30.3
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCc
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~ 187 (346)
.++|.|+|+|.+|..+|+.|...|+ ++..+|...-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 5799999999999999999998898 6999997543
No 357
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.70 E-value=0.083 Score=53.62 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=34.7
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
..+.+++|.|+|+|.+|+++|+.|+..|++|.++|+..
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 45788999999999999999999999999999999753
No 358
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.64 E-value=0.088 Score=53.72 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=33.6
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
++.++++.|+|+|..|.++|+.|+..|++|.++|...
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3568899999999999999999999999999999754
No 359
>PRK14851 hypothetical protein; Provisional
Probab=93.63 E-value=0.17 Score=53.59 Aligned_cols=182 Identities=16% Similarity=0.106 Sum_probs=93.7
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccc------cchhh----hc------cccc-ccc
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ------SSALA----VK------NGII-DDL 209 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~------~~~~~----~~------~~~~-~~~ 209 (346)
...|++++|+|+|+|.+|..+|..|...|. ++..+|...-....-.++ +.+.. .+ +-.+ ...
T Consensus 38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~ 117 (679)
T PRK14851 38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITP 117 (679)
T ss_pred HHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 457899999999999999999999998887 577766432111000000 00000 00 0000 000
Q ss_pred ccccCCcCCHHHHhhcCCEEEEeecC-CccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH-hCCCeEEEEec
Q 019081 210 VDEKGCHEDIFEFASKADVVVCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE-CGHLGGLGIDV 287 (346)
Q Consensus 210 ~~~~~~~~~l~ell~~aDiV~~~lPl-t~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~-~g~i~ga~lDV 287 (346)
........+++++++.+|+|+.++-. +-+++.+++.... +.+.-+|..+-.+.-- .+. ... .|.. .-|.
T Consensus 118 ~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~~g--~~~-~~~p~~~~---~~~~ 188 (679)
T PRK14851 118 FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGYSS--AML-VFTPQGMG---FDDY 188 (679)
T ss_pred EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeecccccc--eEE-EEcCCCCC---HhHh
Confidence 00111234567888889998877632 1134445554332 2344455543100000 000 000 0000 0112
Q ss_pred CCC-----------------CCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 019081 288 AWT-----------------EPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 338 (346)
Q Consensus 288 ~~~-----------------EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~ 338 (346)
|+- .|-+..+..++..+|=++.+-+-++.-.-..+...+.....+++.|+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (679)
T PRK14851 189 FNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKG 256 (679)
T ss_pred ccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCC
Confidence 222 233334455577788888888888777777777788877777776553
No 360
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.50 E-value=0.18 Score=48.61 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=54.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHcc-CC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KAD 227 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD 227 (346)
.|.+|.|+|.|.||...++.++. +| .+|++++++..+.. .+...+.....+++.+ ..|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~------------------~a~~~~~~~~~~~~~~~~g~d 224 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD------------------LFSFADETYLIDDIPEDLAVD 224 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH------------------HHhhcCceeehhhhhhccCCc
Confidence 47899999999999999988875 54 68999987654311 1111110001112212 368
Q ss_pred EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
+|+-++... .+...+ ...++.++++..++.++-
T Consensus 225 ~viD~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 225 HAFECVGGR-GSQSAI-NQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EEEECCCCC-ccHHHH-HHHHHhCcCCcEEEEEee
Confidence 887776521 011111 345677888888887763
No 361
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.45 E-value=0.18 Score=49.61 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=58.3
Q ss_pred cCCCeEEEEecC----------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHH
Q 019081 151 LLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF 220 (346)
Q Consensus 151 l~g~tvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (346)
|.|||+||+|+- .-...++++|+..|++|.+|||....... .......-..+++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~----------------~~~~~~~~~~~~~ 371 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAF----------------RNFPDVELESDAE 371 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHH----------------hcCCCceEeCCHH
Confidence 899999999984 34678899999999999999985433110 0000001236899
Q ss_pred HHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEE
Q 019081 221 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 259 (346)
Q Consensus 221 ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN 259 (346)
++++.||+++++... ++-+.+ +-+.+ .|| +.++++
T Consensus 372 ~~~~~aDaivi~tew-~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 372 EALKGADAIVINTEW-DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhhCCEEEEeccH-HHHhcc-Chhhh-hcc-CCEEEe
Confidence 999999999998642 233333 33333 565 444544
No 362
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.42 E-value=0.099 Score=52.72 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=33.5
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~ 185 (346)
.+.|++|.|+|+|.+|.++|+.|+..|++|.++|..
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 467899999999999999999999999999999965
No 363
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.36 E-value=0.28 Score=47.31 Aligned_cols=108 Identities=18% Similarity=0.137 Sum_probs=59.7
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHc--cCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLR--PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
-+..++|+|+|. |.||..+|..+. ...-++..+|+.... ....+. . +..............+..+.++.|
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~-g~a~Dl--~----~~~~~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP-GVAADL--S----HIDTPAKVTGYADGELWEKALRGA 77 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc-ccccch--h----hcCcCceEEEecCCCchHHHhCCC
Confidence 456779999999 999999999888 455689999983211 100000 0 000000000000112336789999
Q ss_pred CEEEEeecCCccccC-----CCC------HHHHcc---CCCCcEEEEcCCCCC
Q 019081 227 DVVVCCLSLNKQTAG-----IVN------KSFLSS---MKKGSLLVNIARGGL 265 (346)
Q Consensus 227 DiV~~~lPlt~~T~~-----li~------~~~l~~---mk~gailIN~sRg~~ 265 (346)
|+|++++-.. ...+ ++. +..+.. -.+.++++.++-+--
T Consensus 78 DvVVitaG~~-~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvd 129 (321)
T PTZ00325 78 DLVLICAGVP-RKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN 129 (321)
T ss_pred CEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 9999876532 2211 221 122333 356778888865443
No 364
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.25 E-value=0.093 Score=53.21 Aligned_cols=116 Identities=22% Similarity=0.164 Sum_probs=66.3
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
+.||+|+|+|+|.-|+++|+.|+..|++|+++|.+.......... + ......... ....+.+.++|+|+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~---l-------~~~~~~~~~-~~~~~~~~~~d~vV 74 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGA---L-------ADAALLVET-EASAQRLAAFDVVV 74 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHH---H-------hhcCEEEeC-CCChHHccCCCEEE
Confidence 568999999999999999999999999999999643321100000 0 000000001 11235567899887
Q ss_pred Eee--cCCcc--------ccCCCCHHHH--cc-CC-----CCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081 231 CCL--SLNKQ--------TAGIVNKSFL--SS-MK-----KGSLLVNIARGGLLDYEAIAHYLEC 277 (346)
Q Consensus 231 ~~l--Plt~~--------T~~li~~~~l--~~-mk-----~gailIN~sRg~~vd~~aL~~aL~~ 277 (346)
..- |.+.. ...++++-.| .. ++ ...+-|-=+.|..-...-+.+.|+.
T Consensus 75 ~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 75 KSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 743 32211 1124554443 33 32 1244455467777777767777764
No 365
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.22 E-value=0.45 Score=45.72 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=58.6
Q ss_pred CeEEEEec-CHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccc-ccCC--c-CCHHHHhhcC
Q 019081 154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGC--H-EDIFEFASKA 226 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-~~l~ell~~a 226 (346)
.+|+|||. |.+|..+|-.+...|. ++..+|.+ .......+. . +.... .... . .++.+.+++|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL--~--------~~~~~~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADL--S--------HINTPAKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHh--H--------hCCCcceEEEecCCCchHHhcCCC
Confidence 37999999 9999999999886664 79999987 221111110 0 00000 0001 1 2456788999
Q ss_pred CEEEEeecCCccccCC-----C--CH-------HHHccCCCCcEEEEcCCC
Q 019081 227 DVVVCCLSLNKQTAGI-----V--NK-------SFLSSMKKGSLLVNIARG 263 (346)
Q Consensus 227 DiV~~~lPlt~~T~~l-----i--~~-------~~l~~mk~gailIN~sRg 263 (346)
|+|+++.-. +...++ + |. +.+..-.|.+++||++-.
T Consensus 70 DivvitaG~-~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 70 DVVVIPAGV-PRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CEEEEeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 999987643 222222 1 11 234444689999999544
No 366
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.17 E-value=0.19 Score=46.87 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=31.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~ 186 (346)
.|++|.|+|.|.||...++.++.+|.+ |++.+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 688999999999999999999999997 88887654
No 367
>PRK10206 putative oxidoreductase; Provisional
Probab=93.04 E-value=0.16 Score=49.34 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=40.5
Q ss_pred eEEEEecCHHHHH-HHHHH-cc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--c
Q 019081 155 TVFILGFGNIGVE-LAKRL-RP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--K 225 (346)
Q Consensus 155 tvgIiG~G~IG~~-vA~~l-~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~ 225 (346)
++||||+|.|++. .+..+ .. -++++. ++|++.... . ....++ .+.+++++++ +
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~-----------------~~~~~~~~~~~~~~~ell~~~~ 64 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-E-----------------QAPIYSHIHFTSDLDEVLNDPD 64 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-H-----------------HHHhcCCCcccCCHHHHhcCCC
Confidence 7999999998864 34433 32 367876 477654221 0 111111 3468999995 5
Q ss_pred CCEEEEeecCC
Q 019081 226 ADVVVCCLSLN 236 (346)
Q Consensus 226 aDiV~~~lPlt 236 (346)
.|+|++++|..
T Consensus 65 iD~V~I~tp~~ 75 (344)
T PRK10206 65 VKLVVVCTHAD 75 (344)
T ss_pred CCEEEEeCCch
Confidence 79999999854
No 368
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.01 E-value=0.88 Score=43.95 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=63.6
Q ss_pred eEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCC--ccccccccccchhhhcccccccccccc------C-CcC
Q 019081 155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSW--ASHSQVSCQSSALAVKNGIIDDLVDEK------G-CHE 217 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~ 217 (346)
+|+|+|. |.||..+|..+...|. ++..+|++. ....... .++.+.. . -..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~-------------~Dl~d~~~~~~~~~~i~~ 68 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVV-------------MELQDCAFPLLKGVVITT 68 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceee-------------eehhhhcccccCCcEEec
Confidence 7999999 9999999998875442 588999865 2211100 0111110 0 014
Q ss_pred CHHHHhhcCCEEEEeecCCccccCCC-------C-------HHHHccC-CCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081 218 DIFEFASKADVVVCCLSLNKQTAGIV-------N-------KSFLSSM-KKGSLLVNIARGGLLDYEAIAHYLECG 278 (346)
Q Consensus 218 ~l~ell~~aDiV~~~lPlt~~T~~li-------~-------~~~l~~m-k~gailIN~sRg~~vd~~aL~~aL~~g 278 (346)
+..+.+++||+|++..- .+...++- | ...++.. +|++++|.++ ..+|.-.-+-.-.+|
T Consensus 69 ~~~~~~~~aDiVVitAG-~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~k~sg 141 (323)
T cd00704 69 DPEEAFKDVDVAILVGA-FPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIALKNAP 141 (323)
T ss_pred ChHHHhCCCCEEEEeCC-CCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHHHHHcC
Confidence 56788999999998653 23333321 1 1234445 5888999885 666654444333333
No 369
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.99 E-value=0.25 Score=48.05 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=31.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.|++|.|.|.|.||...++.++.+|.+|++.+.+.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999999999999999999998877654
No 370
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=92.89 E-value=0.12 Score=51.53 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.4
Q ss_pred CeEEEEecCHHHHHHHHHHcc-CCCEEEEEc
Q 019081 154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK 183 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d 183 (346)
.+|||.|||+|||.+++.+.. ++++|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN 116 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN 116 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence 489999999999999999874 899988854
No 371
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.87 E-value=0.1 Score=47.16 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=48.0
Q ss_pred EEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEEee
Q 019081 156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 156 vgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~~l 233 (346)
|.|+|. |.+|+.+++.|..-|++|.+.-|+..+.........+ ...+. .+...++|.+.++.+|.|++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g--------~~vv~~d~~~~~~l~~al~g~d~v~~~~ 72 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALG--------AEVVEADYDDPESLVAALKGVDAVFSVT 72 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTT--------TEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhccc--------ceEeecccCCHHHHHHHHcCCceEEeec
Confidence 578896 9999999999999999999988865321110000000 01110 0113467888999999999999
Q ss_pred cCC
Q 019081 234 SLN 236 (346)
Q Consensus 234 Plt 236 (346)
|..
T Consensus 73 ~~~ 75 (233)
T PF05368_consen 73 PPS 75 (233)
T ss_dssp SCS
T ss_pred Ccc
Confidence 954
No 372
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=92.85 E-value=3.8 Score=42.35 Aligned_cols=227 Identities=10% Similarity=0.071 Sum_probs=133.1
Q ss_pred hcCCCCeEEEEcCccCCc-cchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccc
Q 019081 72 SRANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET 150 (346)
Q Consensus 72 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~ 150 (346)
...|+ -+|+.-=-|..+ +.+..--+..|.+.|.-= +.+|-.+++.+|+.+|-. +..
T Consensus 238 ~~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDi------QGTaaV~lAgll~Alr~~----------------g~~ 294 (559)
T PTZ00317 238 SRWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFNDDI------QGTGAVIAAGFLNALKLS----------------GVP 294 (559)
T ss_pred HhCCC-eEEehhhcCCccHHHHHHHhccCCCEecccc------hhHHHHHHHHHHHHHHHh----------------CCC
Confidence 34566 366655444433 343333445688888632 456778888889888742 567
Q ss_pred cCCCeEEEEecCHHHHHHHHHHcc----CCC-------EEEEEcCCCccccccccccchhhhcccccccccccc--C---
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--G--- 214 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~----~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 214 (346)
|.+.++.|+|.|..|-.+|+.+.. .|. +++.+|+..--..........+. ..++... .
T Consensus 295 l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k------~~fa~~~~~~~~~ 368 (559)
T PTZ00317 295 PEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHK------VPFARTDISAEDS 368 (559)
T ss_pred hhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHH------HHHhccccccccc
Confidence 999999999999999999998863 577 78888875421100000000000 0111111 0
Q ss_pred CcCCHHHHhhcC--CEEEEeecCCccccCCCCHHHHccCCC---CcEEEEcCCCCCCCHHHHHHHHH--hCC-CeEEEEe
Q 019081 215 CHEDIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSLLVNIARGGLLDYEAIAHYLE--CGH-LGGLGID 286 (346)
Q Consensus 215 ~~~~l~ell~~a--DiV~~~lPlt~~T~~li~~~~l~~mk~---gailIN~sRg~~vd~~aL~~aL~--~g~-i~ga~lD 286 (346)
...+|.|+++.. |+++-+- ...|.|+++.++.|.+ ..++.=.|...--.|-.-.+|.+ +|+ |.+.|--
T Consensus 369 ~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGsp 444 (559)
T PTZ00317 369 SLKTLEDVVRFVKPTALLGLS----GVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSP 444 (559)
T ss_pred cCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCC
Confidence 135899999998 9988642 2347999999999984 89999999887544433334444 454 4433321
Q ss_pred cCCCCCCCCCCC---CCCCCceEEccCCCCC-----cHHHHHHHHHHHHHHHHHHH
Q 019081 287 VAWTEPFDPNDP---ILKFKNVLITPHVGGV-----TEHSYRSMAKVVGDVALQLH 334 (346)
Q Consensus 287 V~~~EPl~~~~p---L~~~~nviiTPH~a~~-----t~~~~~~~~~~~~~ni~~~~ 334 (346)
. +|..-+.. -=...|+++-|=++-. .......|...+++.+-.+.
T Consensus 445 f---~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v 497 (559)
T PTZ00317 445 F---PPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLV 497 (559)
T ss_pred C---CCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhC
Confidence 1 11111111 1135788999976632 11222445555555555443
No 373
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.76 E-value=0.076 Score=47.56 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=36.4
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~ 186 (346)
|+......|+.++|.|+|+|.+|..+++.|...|.. +..+|...
T Consensus 9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 544334678999999999999999999999988985 88888653
No 374
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.75 E-value=0.15 Score=51.74 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=34.9
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
+..+.++++.|+|.|.+|.++|+.|+..|++|.++|++.
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345789999999999999999999999999999999654
No 375
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=92.68 E-value=0.27 Score=45.20 Aligned_cols=93 Identities=23% Similarity=0.282 Sum_probs=56.6
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh---cCC
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KAD 227 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD 227 (346)
+.|++|.=||+| |..+++-++..|++|++.|-+.+.-..... ++..+ ...--....+.+++.. +.|
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~----ha~e~-----gv~i~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKL----HALES-----GVNIDYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHH----hhhhc-----cccccchhhhHHHHHhcCCCcc
Confidence 899999999999 458888888899999999987543211110 00000 0100012345667665 689
Q ss_pred EEEE-----eecCCccccCCCCHHHHccCCCCcEEE
Q 019081 228 VVVC-----CLSLNKQTAGIVNKSFLSSMKKGSLLV 258 (346)
Q Consensus 228 iV~~-----~lPlt~~T~~li~~~~l~~mk~gailI 258 (346)
+|++ |+|. ++. |=+...+.+|||.+++
T Consensus 127 vV~cmEVlEHv~d-p~~---~~~~c~~lvkP~G~lf 158 (243)
T COG2227 127 VVTCMEVLEHVPD-PES---FLRACAKLVKPGGILF 158 (243)
T ss_pred EEEEhhHHHccCC-HHH---HHHHHHHHcCCCcEEE
Confidence 9977 5552 221 3334667789886654
No 376
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=92.66 E-value=0.14 Score=43.87 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=26.3
Q ss_pred eEEEEecCHHHHHHHHHHc-cCCCEEEEEcCC
Q 019081 155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRS 185 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~ 185 (346)
+|||-|||+|||.+++.+. .-.++|++++..
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~ 33 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDP 33 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEES
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEecc
Confidence 7999999999999999887 567888887643
No 377
>PRK07877 hypothetical protein; Provisional
Probab=92.65 E-value=0.13 Score=54.91 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=61.5
Q ss_pred ccccCCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccc---cchhhhc------------cccc-ccc
Q 019081 148 GETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQ---SSALAVK------------NGII-DDL 209 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~---~~~~~~~------------~~~~-~~~ 209 (346)
...|..++|+|+|+| +|..+|..|...|. +++.+|...-....-.+. ......+ +-.+ ...
T Consensus 102 Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 102 QERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 357899999999999 99999999998784 788777533211000000 0000000 0000 000
Q ss_pred ccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHcc
Q 019081 210 VDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 250 (346)
Q Consensus 210 ~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~ 250 (346)
........++++++..+|+|+-|+- +-+++.++++...++
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1111123578889999999999886 567888888776654
No 378
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.65 E-value=0.12 Score=49.34 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=33.9
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 188 (346)
.|+|+.|+|+|.+|.++++-+++.|+ +++++|.+..+
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence 68999999999999999999999998 79999987654
No 379
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=92.63 E-value=0.6 Score=47.14 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=70.3
Q ss_pred cCCCeEEEEec----CHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081 151 LLGKTVFILGF----GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224 (346)
Q Consensus 151 l~g~tvgIiG~----G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 224 (346)
++-++|.|||. |++|..+.+.++..|+ +|+.+++..... ... ..+.+++++-.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i------------------~G~---~~~~sl~~lp~ 63 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI------------------LGV---KAYPSVLEIPD 63 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc------------------CCc---cccCCHHHCCC
Confidence 45679999999 8899999999998887 688888753220 011 13567888877
Q ss_pred cCCEEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCCCCCC-----CHHHHHHHHHhCCCe
Q 019081 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIARGGLL-----DYEAIAHYLECGHLG 281 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sRg~~v-----d~~aL~~aL~~g~i~ 281 (346)
..|++++++|. +.+..++.+ +....-. ++++.-+-++.- .+++|.++.+++.+.
T Consensus 64 ~~Dlavi~vp~-~~~~~~l~e--~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 64 PVDLAVIVVPA-KYVPQVVEE--CGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred CCCEEEEecCH-HHHHHHHHH--HHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 88999999994 344444432 2223433 444443333322 357888888877654
No 380
>PLN02602 lactate dehydrogenase
Probab=92.57 E-value=0.29 Score=47.84 Aligned_cols=100 Identities=11% Similarity=0.193 Sum_probs=57.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC-C-cCCHHHHhhcCCEE
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASKADVV 229 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~aDiV 229 (346)
++|+|||.|.||..+|-.+...|. ++..+|.+.......... ..+. ..+..... . ..+.+ .+++||+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D-L~~~------~~~~~~~~i~~~~dy~-~~~daDiV 109 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD-LQHA------AAFLPRTKILASTDYA-VTAGSDLC 109 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH-HHhh------hhcCCCCEEEeCCCHH-HhCCCCEE
Confidence 699999999999999998875554 799999865432111100 0000 00000000 1 12444 48999999
Q ss_pred EEeecCC--c-ccc-CCCC---------HHHHccCCCCcEEEEcC
Q 019081 230 VCCLSLN--K-QTA-GIVN---------KSFLSSMKKGSLLVNIA 261 (346)
Q Consensus 230 ~~~lPlt--~-~T~-~li~---------~~~l~~mk~gailIN~s 261 (346)
+++.-.. + .|| .++. .+.+....|.+++|+++
T Consensus 110 VitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 110 IVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9975421 1 122 1111 12344456889999997
No 381
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.55 E-value=0.32 Score=45.35 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=45.7
Q ss_pred eEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHh------hc-
Q 019081 155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFA------SK- 225 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell------~~- 225 (346)
++.|+|. |.||+.+++.|...|++|.+..|+..+..... .+... ......++.+++ ..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~-------------~~~~~~d~~d~~~l~~a~~~~~~~~g~ 67 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPN-------------EKHVKFDWLDEDTWDNPFSSDDGMEPE 67 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCC-------------CccccccCCCHHHHHHHHhcccCcCCc
Confidence 3678887 99999999999999999999998765321100 00000 011234566666 45
Q ss_pred CCEEEEeecCC
Q 019081 226 ADVVVCCLSLN 236 (346)
Q Consensus 226 aDiV~~~lPlt 236 (346)
+|.|+++.|..
T Consensus 68 ~d~v~~~~~~~ 78 (285)
T TIGR03649 68 ISAVYLVAPPI 78 (285)
T ss_pred eeEEEEeCCCC
Confidence 89999887754
No 382
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.49 E-value=0.16 Score=42.54 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=28.8
Q ss_pred eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
+|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 699998754
No 383
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.42 E-value=0.19 Score=50.49 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=33.7
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
+.++++.|+|.|.+|.++|+.|+..|++|.++|....
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5689999999999999999999999999999997543
No 384
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.42 E-value=0.19 Score=48.24 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=32.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~ 188 (346)
.|.+|.|.|.|.+|...++.++.+|++|++.+++..+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~ 201 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAA 201 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHH
Confidence 4789999999999999999999999999998876543
No 385
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.31 E-value=1.4 Score=44.57 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=36.3
Q ss_pred CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 147 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
......|++|+|||.|.-|.+.|..|...|..|++|++...
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 34467889999999999999999999999999999987643
No 386
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.24 E-value=0.42 Score=46.20 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=59.3
Q ss_pred eEEEEec-CHHHHHHHHHHccCC-------CEEEEEcCCCccccccccccchhhhcccccccccc-------ccCCcCCH
Q 019081 155 TVFILGF-GNIGVELAKRLRPFG-------VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-------EKGCHEDI 219 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l 219 (346)
+|+|+|. |.+|..++..|...| .+|..+|++.......... .++.+ ......++
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~-----------~Dl~d~~~~~~~~~~~~~~~ 72 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV-----------MELQDCAFPLLKSVVATTDP 72 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee-----------eehhhccccccCCceecCCH
Confidence 7999999 999999999887633 4899999854321000000 01111 00013567
Q ss_pred HHHhhcCCEEEEeecCCccccCC-----C--CH-------HHHccC-CCCcEEEEcCCCCCCCH
Q 019081 220 FEFASKADVVVCCLSLNKQTAGI-----V--NK-------SFLSSM-KKGSLLVNIARGGLLDY 268 (346)
Q Consensus 220 ~ell~~aDiV~~~lPlt~~T~~l-----i--~~-------~~l~~m-k~gailIN~sRg~~vd~ 268 (346)
.+.++.||+|+.+.-.. ...+. + |. ..+... ++++++|.++ ..+|.
T Consensus 73 ~~~l~~aDiVI~tAG~~-~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~ 133 (325)
T cd01336 73 EEAFKDVDVAILVGAMP-RKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANT 133 (325)
T ss_pred HHHhCCCCEEEEeCCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHH
Confidence 78899999998865432 21122 1 11 234444 5789999987 44543
No 387
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=92.18 E-value=0.65 Score=45.15 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=46.7
Q ss_pred cccCCCeEEEEec---CHHHHHHHHHHc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHH
Q 019081 149 ETLLGKTVFILGF---GNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIF 220 (346)
Q Consensus 149 ~~l~g~tvgIiG~---G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ 220 (346)
..+.|++|+++|= +++..+.+..+. -+|++|....|..-..+.. .+ +.....+ ...+++
T Consensus 155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~------------~~-~~~~~~g~~~~~~~d~~ 221 (338)
T PRK08192 155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDY------------VI-SDIENAGHKITITDQLE 221 (338)
T ss_pred CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHH------------HH-HHHHHcCCeEEEEcCHH
Confidence 4588999999999 578888888765 4599998887643211100 00 0011111 236899
Q ss_pred HHhhcCCEEEEe
Q 019081 221 EFASKADVVVCC 232 (346)
Q Consensus 221 ell~~aDiV~~~ 232 (346)
+.+++||+|..-
T Consensus 222 ea~~~aDvvyt~ 233 (338)
T PRK08192 222 GNLDKADILYLT 233 (338)
T ss_pred HHHccCCEEEEc
Confidence 999999999883
No 388
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.13 E-value=0.21 Score=51.72 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=32.9
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
-.|+++.|.|. |.||+.+++.|...|++|++++|+..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46789999996 99999999999999999999988654
No 389
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.12 E-value=0.18 Score=50.83 Aligned_cols=114 Identities=23% Similarity=0.185 Sum_probs=66.4
Q ss_pred cCCCeEEEEecCHHHHH-HHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081 151 LLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~-vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 229 (346)
..++++.|+|+|..|.+ +|+.|+..|++|.++|......... + . ....... . ..-.+.+..+|+|
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~------l--~----~~gi~~~-~-~~~~~~~~~~d~v 70 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQR------L--L----ELGAIIF-I-GHDAENIKDADVV 70 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHH------H--H----HCCCEEe-C-CCCHHHCCCCCEE
Confidence 46789999999999999 7999999999999999754321000 0 0 0000000 0 1123445678988
Q ss_pred EEee--cCC-cc-------ccCCCCHHHH-cc-CCC-CcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081 230 VCCL--SLN-KQ-------TAGIVNKSFL-SS-MKK-GSLLVNIARGGLLDYEAIAHYLECG 278 (346)
Q Consensus 230 ~~~l--Plt-~~-------T~~li~~~~l-~~-mk~-gailIN~sRg~~vd~~aL~~aL~~g 278 (346)
+..- |.+ +. ...++++-.| .. +++ -.+-|-=+.|..-...=+.+.|+..
T Consensus 71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 7643 322 11 1134554433 33 332 2444555678877777677777654
No 390
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.95 E-value=0.28 Score=44.98 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=33.6
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
....++++.|+|. |.||+.+++.|...|++|+++.|+..
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~ 52 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD 52 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 4567899999995 99999999999989999998877643
No 391
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=91.93 E-value=0.13 Score=46.98 Aligned_cols=150 Identities=21% Similarity=0.213 Sum_probs=85.5
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc----ccchhhhcccccccc------ccc----cCCcC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC----QSSALAVKNGIIDDL------VDE----KGCHE 217 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~----~~~~~ 217 (346)
.=+.|+|||.|.+|.-+|+.+..-|.+|..+|++......... ....++.+.. .+.. ++. .....
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~-~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKK-ADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcc-cCChhhHHHHHHHHHHHHHHcC
Confidence 3468999999999999999999999999999987643211100 0000111100 0000 000 01234
Q ss_pred CHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCC
Q 019081 218 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN 296 (346)
Q Consensus 218 ~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~ 296 (346)
++.++.+++|+|+=++--+-+.+.=+-++.=...|+.++|. |+|. +...++..+++.... .+||-.|.+-|.
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPv--- 161 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPV--- 161 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchh---
Confidence 66677777887776554443332222333333467777764 5544 455677778776544 468888877664
Q ss_pred CCCCCCCceEEccCCC
Q 019081 297 DPILKFKNVLITPHVG 312 (346)
Q Consensus 297 ~pL~~~~nviiTPH~a 312 (346)
.++=-||=|+-.+
T Consensus 162 ---MKLvEVir~~~TS 174 (298)
T KOG2304|consen 162 ---MKLVEVIRTDDTS 174 (298)
T ss_pred ---HHHhhhhcCCCCC
Confidence 2333355555444
No 392
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.93 E-value=0.26 Score=46.93 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=45.7
Q ss_pred eEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc-cCCcCCHHHHhhcCCEEEEe
Q 019081 155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 155 tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiV~~~ 232 (346)
+|.|.| .|.||+.+++.|...|++|.++.|+..+..... . .+ .+.+.. .....++.++++.+|+|+.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~-~-~~--------v~~v~~Dl~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK-E-WG--------AELVYGDLSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh-h-cC--------CEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence 788999 599999999999999999999988643210000 0 00 011100 01234677889999998876
Q ss_pred ec
Q 019081 233 LS 234 (346)
Q Consensus 233 lP 234 (346)
.+
T Consensus 72 ~~ 73 (317)
T CHL00194 72 ST 73 (317)
T ss_pred CC
Confidence 54
No 393
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.93 E-value=0.39 Score=46.38 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=61.4
Q ss_pred CeEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCCcccc-ccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081 154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHS-QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 224 (346)
++|+|||. |.||..+|..+...|. ++..+|....... .....+. .+... .......-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl----~~~~~-~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMEL----EDCAF-PLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhh----hhccc-cccCceEEecCcHHHhC
Confidence 48999999 9999999998876555 7999998532210 0000000 00000 00000000134567889
Q ss_pred cCCEEEEeecCCccccCCC-------CH-------HHHccCC-CCcEEEEcCCCCCCCHHHHHH
Q 019081 225 KADVVVCCLSLNKQTAGIV-------NK-------SFLSSMK-KGSLLVNIARGGLLDYEAIAH 273 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li-------~~-------~~l~~mk-~gailIN~sRg~~vd~~aL~~ 273 (346)
+||+|+++.-. +...++- |. ..+.... |.+++|+++ ..+|.-.-+-
T Consensus 78 daDivvitaG~-~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~ 138 (322)
T cd01338 78 DADWALLVGAK-PRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIA 138 (322)
T ss_pred CCCEEEEeCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHH
Confidence 99999997643 2223321 11 1233334 589999996 5565544333
No 394
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=91.88 E-value=0.24 Score=38.86 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=39.9
Q ss_pred CCeEEEEecCHHHHHHHHHH-ccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCE
Q 019081 153 GKTVFILGFGNIGVELAKRL-RPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV 228 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l-~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi 228 (346)
..+++|+|+|+.|++++... ...|++ +.++|.++....... .... .+.+++++.+. .|+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i--------------~gip---V~~~~~~l~~~~~i~i 65 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI--------------GGIP---VYGSMDELEEFIEIDI 65 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE--------------TTEE---EESSHHHHHHHCTTSE
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE--------------CCEE---eeccHHHhhhhhCCCE
Confidence 34799999999999987544 345655 345665544311000 0000 12467777666 999
Q ss_pred EEEeecC
Q 019081 229 VVCCLSL 235 (346)
Q Consensus 229 V~~~lPl 235 (346)
-++++|.
T Consensus 66 aii~VP~ 72 (96)
T PF02629_consen 66 AIITVPA 72 (96)
T ss_dssp EEEES-H
T ss_pred EEEEcCH
Confidence 9999984
No 395
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=91.87 E-value=0.29 Score=47.69 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=63.4
Q ss_pred CeEEEEecCHHHHHHHHHHccC--CCEEEE-EcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081 154 KTVFILGFGNIGVELAKRLRPF--GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 228 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~--G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 228 (346)
.+|||||+ .+|+..++.++.. ++++.+ +|++..+. ...+++++ .+.++++++++.|+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA-----------------~~~A~~~gi~~y~~~eell~d~Di 65 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERS-----------------RALAHRLGVPLYCEVEELPDDIDI 65 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHH-----------------HHHHHHhCCCccCCHHHHhcCCCE
Confidence 58999999 6899998888764 578665 56654331 11222222 35799999999999
Q ss_pred EEEeecCC-ccccCCCCHHHHccCCCCc-EEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081 229 VVCCLSLN-KQTAGIVNKSFLSSMKKGS-LLVNIARGGLLDYEAIAHYLECGHLG 281 (346)
Q Consensus 229 V~~~lPlt-~~T~~li~~~~l~~mk~ga-ilIN~sRg~~vd~~aL~~aL~~g~i~ 281 (346)
+++++|.+ +...|. +-..+.|+.|- +|+--==. .-+.++|+++.++..+.
T Consensus 66 ~~V~ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~ 117 (343)
T TIGR01761 66 ACVVVRSAIVGGQGS--ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR 117 (343)
T ss_pred EEEEeCCCCCCccHH--HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCE
Confidence 99999842 222221 22233345553 33322111 23455677776665554
No 396
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=91.85 E-value=0.18 Score=48.35 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=27.6
Q ss_pred CeEEEEecCHHHHHHHHHHccCC--CEEEEEcC
Q 019081 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKR 184 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~ 184 (346)
-+|||=|||+|||.+++.+...+ |+|++++.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 37999999999999999998764 99999876
No 397
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=91.77 E-value=0.33 Score=47.48 Aligned_cols=33 Identities=36% Similarity=0.592 Sum_probs=30.5
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
+|+|+|.|..|+.+++.++.+|++|+++|++..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~ 33 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYAN 33 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 589999999999999999999999999998654
No 398
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.76 E-value=0.49 Score=45.71 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=59.1
Q ss_pred eEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCCcc--ccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081 155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWAS--HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 224 (346)
+|+|||. |.+|..+|..+...|. ++..+|..... ....... . .+... .......-..+..+.++
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-l----~~~~~-~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAME-L----EDCAF-PLLAGVVATTDPEEAFK 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHH-H----hhccc-cccCCcEEecChHHHhC
Confidence 8999998 9999999998876664 79999985421 1110000 0 00000 00000001135567889
Q ss_pred cCCEEEEeecCCccccCCC-------CH-------HHHccCCC-CcEEEEcCCCCCCCHH
Q 019081 225 KADVVVCCLSLNKQTAGIV-------NK-------SFLSSMKK-GSLLVNIARGGLLDYE 269 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~li-------~~-------~~l~~mk~-gailIN~sRg~~vd~~ 269 (346)
+||+|+++.-. +...++- |. ..+....| .+++|.++ ..+|.-
T Consensus 79 daDvVVitAG~-~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~ 135 (323)
T TIGR01759 79 DVDAALLVGAF-PRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTN 135 (323)
T ss_pred CCCEEEEeCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHH
Confidence 99999997643 2222221 11 12333444 89999996 555543
No 399
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=91.75 E-value=0.12 Score=45.77 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=43.0
Q ss_pred eEEEEecCHHHHHHHHH--HccCCCEE-EEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCEE
Q 019081 155 TVFILGFGNIGVELAKR--LRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV 229 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~--l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV 229 (346)
++.|||.|++|++++.. .+..||++ .+||..+..--... .+ .. .....++++.++ +.|+.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~-------------~~-v~-V~~~d~le~~v~~~dv~ia 150 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI-------------GD-VP-VYDLDDLEKFVKKNDVEIA 150 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc-------------CC-ee-eechHHHHHHHHhcCccEE
Confidence 68899999999999874 34678985 56776543210000 00 00 012356777787 67889
Q ss_pred EEeecCC
Q 019081 230 VCCLSLN 236 (346)
Q Consensus 230 ~~~lPlt 236 (346)
++++|..
T Consensus 151 iLtVPa~ 157 (211)
T COG2344 151 ILTVPAE 157 (211)
T ss_pred EEEccHH
Confidence 9999953
No 400
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.74 E-value=0.22 Score=50.02 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
++-+++|+|+|.+|.++|+.|+..|++|.++|...
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 34589999999999999999999999999999754
No 401
>PRK07411 hypothetical protein; Validated
Probab=91.72 E-value=0.12 Score=51.23 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=35.8
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
|+......|..++|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus 28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 44333467999999999999999999999998888 588888643
No 402
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.64 E-value=0.46 Score=42.11 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=49.4
Q ss_pred CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081 154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
++++|||. |.+|+.+++.+..-|.+|+++-|+..+..... +....++ + ....+++.+.+..-|+|+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~----~~~i~q~---D----ifd~~~~a~~l~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ----GVTILQK---D----IFDLTSLASDLAGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc----cceeecc---c----ccChhhhHhhhcCCceEEEe
Confidence 47899995 99999999999999999999998876532210 0000000 1 11335566788899999987
Q ss_pred ecCC
Q 019081 233 LSLN 236 (346)
Q Consensus 233 lPlt 236 (346)
.-..
T Consensus 70 ~~~~ 73 (211)
T COG2910 70 FGAG 73 (211)
T ss_pred ccCC
Confidence 7543
No 403
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.44 E-value=0.57 Score=44.27 Aligned_cols=35 Identities=37% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.|+++.|.| .|-||+.+++.|...|++|++++++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 368999999 69999999999999999999888754
No 404
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.43 E-value=0.28 Score=49.08 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=33.4
Q ss_pred ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
++.++++.|+|+|..|.+.++.|+..|.+|.++|...
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3568899999999999999999999999999999654
No 405
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.39 E-value=0.22 Score=47.02 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=39.1
Q ss_pred hcccCCCCccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 140 QKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 140 ~~~~~~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.|......++.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 3 ~~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~ 51 (306)
T PRK06197 3 MTKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD 51 (306)
T ss_pred CCCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3456544346789999999996 89999999999999999999888643
No 406
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.35 E-value=0.4 Score=49.75 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=36.3
Q ss_pred ccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (346)
Q Consensus 142 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~ 185 (346)
.|..+....-.|++|.|||.|.+|...|..|+..|++|+++|+.
T Consensus 126 ~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 126 GWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 35433333457999999999999999999999999999999964
No 407
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.34 E-value=0.29 Score=44.68 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.1
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999996 99999999999999999999988643
No 408
>PLN02214 cinnamoyl-CoA reductase
Probab=91.13 E-value=0.62 Score=44.97 Aligned_cols=82 Identities=22% Similarity=0.132 Sum_probs=49.8
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCC
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKAD 227 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aD 227 (346)
.+.++++.|.|. |.||+.+++.|...|++|.++.|+.......... .+.-....+ .... ......+++++++.+|
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~d 83 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLR--ELEGGKERL-ILCKADLQDYEALKAAIDGCD 83 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHH--HhhCCCCcE-EEEecCcCChHHHHHHHhcCC
Confidence 357889999998 9999999999999999999998764321000000 000000000 0110 0012346778888999
Q ss_pred EEEEeec
Q 019081 228 VVVCCLS 234 (346)
Q Consensus 228 iV~~~lP 234 (346)
+|+.+..
T Consensus 84 ~Vih~A~ 90 (342)
T PLN02214 84 GVFHTAS 90 (342)
T ss_pred EEEEecC
Confidence 8877664
No 409
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=91.10 E-value=0.49 Score=45.21 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCeEEEEecCHHHHHHHHHHc-cCCCEEEE-EcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh---
Q 019081 153 GKTVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--- 224 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~-~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--- 224 (346)
..++||||.|+||+..+..+. .-++++.+ +|++..+... ....+.+ ...+++++++
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gl----------------a~A~~~Gi~~~~~~ie~LL~~~~ 67 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGL----------------ARARRLGVATSAEGIDGLLAMPE 67 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHH----------------HHHHHcCCCcccCCHHHHHhCcC
Confidence 358999999999999666655 44677654 5554432100 0112222 2357888885
Q ss_pred --cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC---CCCC----CCHHHH
Q 019081 225 --KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA---RGGL----LDYEAI 271 (346)
Q Consensus 225 --~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s---Rg~~----vd~~aL 271 (346)
+.|+|+.+.|.... . +-.....+.|..+|+-+ +|++ |+.+++
T Consensus 68 ~~dIDiVf~AT~a~~H---~--e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~ 118 (302)
T PRK08300 68 FDDIDIVFDATSAGAH---V--RHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH 118 (302)
T ss_pred CCCCCEEEECCCHHHH---H--HHHHHHHHcCCeEEECCccccCCcccCcCCHHHH
Confidence 57889999874311 1 11222346677777765 5555 455554
No 410
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=91.08 E-value=0.99 Score=46.39 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=66.6
Q ss_pred ccCCCeEEEEec---CHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHH
Q 019081 150 TLLGKTVFILGF---GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE 221 (346)
Q Consensus 150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e 221 (346)
.+.|++|+++|= |++.++++..+..|| ++|....|..-..+.. .+ +.+.+.+ ...++++
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~------------~~-~~a~~~G~~v~i~~d~~e 237 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEH------------YV-EKMKKNGFEVRIFSSIEE 237 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHH------------HH-HHHHHcCCeEEEEcCHHH
Confidence 578999999998 689999999999998 9998877632211100 00 0011111 2468999
Q ss_pred HhhcCCEE--EE-------eecCC-----cc--ccCCCCHHHHccCCCCcEEEEcC---CCC
Q 019081 222 FASKADVV--VC-------CLSLN-----KQ--TAGIVNKSFLSSMKKGSLLVNIA---RGG 264 (346)
Q Consensus 222 ll~~aDiV--~~-------~lPlt-----~~--T~~li~~~~l~~mk~gailIN~s---Rg~ 264 (346)
.+++||+. .. ..+.. .. -...++++.++.+|++++|.-+. ||.
T Consensus 238 av~~AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcLPa~Rg~ 299 (525)
T PRK13376 238 YLSQKDVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPLPRHKVY 299 (525)
T ss_pred HhccCCccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCCCCCCCC
Confidence 99999952 22 11110 00 23567899999999999998874 663
No 411
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.02 E-value=0.31 Score=43.57 Aligned_cols=38 Identities=34% Similarity=0.401 Sum_probs=33.9
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.||++.|.|. |.||+.+++.+...|++|++++|+..
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 477999999986 99999999999988999999998654
No 412
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=91.01 E-value=0.91 Score=50.18 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=59.4
Q ss_pred cCCC-CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccc-------------c
Q 019081 143 LGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-------------D 208 (346)
Q Consensus 143 ~~~~-~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 208 (346)
|-.+ +...-.|++|+|||-|..|.+.|..|...|..|++|.|+....-- .-|.+|+-.++ +
T Consensus 1774 wm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-----l~ygipnmkldk~vv~rrv~ll~~e 1848 (2142)
T KOG0399|consen 1774 WMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-----LMYGIPNMKLDKFVVQRRVDLLEQE 1848 (2142)
T ss_pred CCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce-----eeecCCccchhHHHHHHHHHHHHhh
Confidence 5443 334568999999999999999999999999999999986532100 00111110000 0
Q ss_pred cc-----cccCCcCCHHHHhhcCCEEEEeecCC
Q 019081 209 LV-----DEKGCHEDIFEFASKADVVVCCLSLN 236 (346)
Q Consensus 209 ~~-----~~~~~~~~l~ell~~aDiV~~~lPlt 236 (346)
.. .+.+...++++|.++-|.|+++.-.|
T Consensus 1849 gi~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1849 GIRFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred CceEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence 11 11223478999999999999988655
No 413
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.00 E-value=0.33 Score=43.85 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=34.1
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
++.|+++.|+|. |.||+.+++.+...|++|++.+++..
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~ 40 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367999999998 99999999999999999999998653
No 414
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=90.99 E-value=0.92 Score=38.10 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=63.0
Q ss_pred HHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C-cCCHHHHhhcCCEEEEeecCCccccCCCC
Q 019081 167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTAGIVN 244 (346)
Q Consensus 167 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~~~lPlt~~T~~li~ 244 (346)
..+++|...|++|++=.-..... +|. ++.....| . ..+-++++++||+|+-.=|.+
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a--------~fs------D~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~-------- 75 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGA--------GFS------DEEYEEAGAEIVSRAEEVYSDADIILKVKPPS-------- 75 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGG--------TB-------HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------
T ss_pred HHHHHHHhCCCEEEEECCCCCcC--------ccc------HHHHhhCCcEEecCchhhcccCCEEEEECCCC--------
Confidence 45677887899998732111110 010 11122222 2 235568999999998876653
Q ss_pred HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081 245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289 (346)
Q Consensus 245 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 289 (346)
.+.++.|++|.++|-..... ....+++.|.+.++...++|...
T Consensus 76 ~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ip 118 (136)
T PF05222_consen 76 EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIP 118 (136)
T ss_dssp GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence 56788899999999886655 58999999999999888887653
No 415
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.96 E-value=0.47 Score=46.52 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.|++|.|.|.|.+|...++.++.+|++|++.+++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999999887653
No 416
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.92 E-value=1.8 Score=42.80 Aligned_cols=94 Identities=16% Similarity=0.255 Sum_probs=66.2
Q ss_pred CccccCCCeEEEEec---CHH-------HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCc
Q 019081 147 TGETLLGKTVFILGF---GNI-------GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 216 (346)
Q Consensus 147 ~~~~l~g~tvgIiG~---G~I-------G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (346)
.++.++|.+|.++|+ |++ ...+.+.+...|.+|.+||+.....+ .+ ......+.
T Consensus 316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~--~~--------------~~~~~~~~ 379 (436)
T COG0677 316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELP--TR--------------EDGEGVTL 379 (436)
T ss_pred cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcch--hh--------------hhccccch
Confidence 367899999999998 333 46788889999999999999765421 00 00000124
Q ss_pred CCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081 217 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 217 ~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~ 260 (346)
..+++.++.+|+|++.+- .+...-++.+.+.++ ..++|++
T Consensus 380 ~~~e~al~~~D~vVi~tD--H~~fk~id~~~i~~~--~~vivDt 419 (436)
T COG0677 380 AILEEALKDADAVVIATD--HSEFKEIDYEAIGKE--AKVIVDT 419 (436)
T ss_pred hhHHHHhccCCEEEEEec--cHHhhcCCHHHhccC--CcEEEEC
Confidence 688999999999999862 233335788888665 6677776
No 417
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.91 E-value=0.44 Score=46.43 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=32.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 188 (346)
.|++|.|.|.|.||...++.++..|+ +|++.+++..+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r 228 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDK 228 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence 47899999999999999999999999 69988876543
No 418
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=90.89 E-value=0.56 Score=44.49 Aligned_cols=66 Identities=26% Similarity=0.292 Sum_probs=41.3
Q ss_pred eEEEEecCHHHHHHHHHHc-cCCCEEEE-EcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--cCC
Q 019081 155 TVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KAD 227 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~-~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~aD 227 (346)
++||||.|.||+..+..+. .-++++.+ +|+++.+... ....+.+ ...+.+++++ +.|
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~l----------------a~A~~~Gi~~~~~~~e~ll~~~dID 66 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGL----------------ARARELGVKTSAEGVDGLLANPDID 66 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHH----------------HHHHHCCCCEEECCHHHHhcCCCCC
Confidence 7999999999998866555 44677664 5655432110 0111222 2346788875 578
Q ss_pred EEEEeecCC
Q 019081 228 VVVCCLSLN 236 (346)
Q Consensus 228 iV~~~lPlt 236 (346)
+|+++.|..
T Consensus 67 aV~iaTp~~ 75 (285)
T TIGR03215 67 IVFDATSAK 75 (285)
T ss_pred EEEECCCcH
Confidence 899998743
No 419
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.82 E-value=0.16 Score=50.30 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=35.6
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
|+......|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 44333457899999999999999999999998887 688888643
No 420
>PRK06153 hypothetical protein; Provisional
Probab=90.79 E-value=0.22 Score=49.03 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=33.2
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 185 (346)
..|++++|+|||+|.+|..++..|...|. +++.+|..
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 36899999999999999999999999888 68888864
No 421
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.75 E-value=0.54 Score=45.99 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=31.7
Q ss_pred CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.+++|.|.|. |.||+.+++.|...|++|++++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 5689999997 9999999999999999999999753
No 422
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=90.75 E-value=1.7 Score=41.47 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=48.0
Q ss_pred cCCCeEEEEe---cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc--cCC-cCCHHHHhh
Q 019081 151 LLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGC-HEDIFEFAS 224 (346)
Q Consensus 151 l~g~tvgIiG---~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~ell~ 224 (346)
+.|++|+|+| +|++.++.++.|+.||.+|..+.|..-..++ .++.++... ... ....+|.++
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~------------~i~~~l~~~~~~~~~~~~~e~~i~ 223 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPE------------YILEELEEKGGVVVEHDSDEEVIE 223 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCch------------hHHHHHhhcCceEEEecchhhhhc
Confidence 8999999999 8999999999999999999998764332211 111112111 112 244556999
Q ss_pred cCCEEEE
Q 019081 225 KADVVVC 231 (346)
Q Consensus 225 ~aDiV~~ 231 (346)
++|++.+
T Consensus 224 ~~DVl~~ 230 (316)
T COG0540 224 EADVLYM 230 (316)
T ss_pred cCCEEEe
Confidence 9999955
No 423
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.74 E-value=0.31 Score=46.74 Aligned_cols=33 Identities=15% Similarity=0.382 Sum_probs=27.4
Q ss_pred eEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCc
Q 019081 155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWA 187 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~ 187 (346)
+|+|||.|.||..+|..+...|. ++..+|.+..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 35 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 58999999999999998765554 7999998654
No 424
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=90.65 E-value=0.83 Score=46.92 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=94.2
Q ss_pred ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226 (346)
Q Consensus 148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 226 (346)
+..+.|+...++|-..| |..++..|+.....|+..-.. ..++.|.+.++
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK------------------------------T~~lae~v~~A 206 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK------------------------------TRNLAEKVSRA 206 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC------------------------------CccHHHHhccC
Confidence 46789999999999876 999999999988888875321 24788889999
Q ss_pred CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV 305 (346)
Q Consensus 227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv 305 (346)
|+|++++--. +++-.+. +|||+++|+++--.+-|..- ++| ++ .=||-..+-- . --=
T Consensus 207 DIvIvAiG~P----efVKgdW---iKpGavVIDvGINyvpD~~K-----ksg~kl---vGDVdfe~Ak----e----vas 263 (935)
T KOG4230|consen 207 DIVIVAIGQP----EFVKGDW---IKPGAVVIDVGINYVPDPSK-----KSGFKL---VGDVDFESAK----E----VAS 263 (935)
T ss_pred CEEEEEcCCc----ceeeccc---ccCCcEEEEccccccCCCCC-----cccceE---eeecchHhhh----h----hhh
Confidence 9999998532 3555554 69999999998666544321 223 23 3366433311 0 112
Q ss_pred EEccCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 019081 306 LITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336 (346)
Q Consensus 306 iiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g 336 (346)
.+||-=||.-+.+..-+.+...+...|+..+
T Consensus 264 ~ITPVPGGVGPMTVAMLmqNtveaAKR~r~e 294 (935)
T KOG4230|consen 264 FITPVPGGVGPMTVAMLMQNTVEAAKRQREE 294 (935)
T ss_pred ccccCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 5799888888877766667777776666543
No 425
>PRK06349 homoserine dehydrogenase; Provisional
Probab=90.65 E-value=0.59 Score=46.86 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=58.1
Q ss_pred CeEEEEecCHHHHHHHHHHcc----------CCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081 154 KTVFILGFGNIGVELAKRLRP----------FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 222 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~----------~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 222 (346)
-+|||+|+|.||+.+++.+.. .+++|. ++|++..+... . .. .......+++++
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~-~--------------~~-~~~~~~~d~~~l 67 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRG-V--------------DL-PGILLTTDPEEL 67 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccC-C--------------CC-cccceeCCHHHH
Confidence 379999999999999887743 245654 45665432100 0 00 000123578899
Q ss_pred hh--cCCEEEEeecCCccccCCCCHHH-HccCCCCcEEEEcCCCCCC-CHHHHHHHHHhCCC
Q 019081 223 AS--KADVVVCCLSLNKQTAGIVNKSF-LSSMKKGSLLVNIARGGLL-DYEAIAHYLECGHL 280 (346)
Q Consensus 223 l~--~aDiV~~~lPlt~~T~~li~~~~-l~~mk~gailIN~sRg~~v-d~~aL~~aL~~g~i 280 (346)
+. +.|+|+.+++..+.. .+. .+.|+.|--+|...-+... .-++|.++.++...
T Consensus 68 l~d~~iDvVve~tg~~~~~-----~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 68 VNDPDIDIVVELMGGIEPA-----RELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred hhCCCCCEEEECCCCchHH-----HHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 85 469999988643211 222 2445555444433222222 23667776666544
No 426
>PRK07856 short chain dehydrogenase; Provisional
Probab=90.55 E-value=0.42 Score=43.53 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=33.1
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
++.||++.|.|. |.||+++|+.|...|++|+..+|+.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 478999999996 6899999999999999999998865
No 427
>PRK10537 voltage-gated potassium channel; Provisional
Probab=90.54 E-value=1.2 Score=44.28 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~ 185 (346)
...+-|+|+|.+|+.+++.|+..|.+|++.|+.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence 457999999999999999999999999888864
No 428
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.52 E-value=0.51 Score=45.07 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA 187 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~ 187 (346)
.|.+|.|+|.|.+|...++.++.+|++ |++.+++..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~ 199 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE 199 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 488999999999999999999999999 999887543
No 429
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=90.42 E-value=0.75 Score=43.09 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=42.0
Q ss_pred eEEEEe-cCHHHHHHHHHHcc-CCCEEEE-EcCCCcccc-ccccccchhhhccccccccccc-cCCcCCHHHHhhcCCEE
Q 019081 155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHS-QVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVV 229 (346)
Q Consensus 155 tvgIiG-~G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiV 229 (346)
+|+|+| +|+||+.+++.+.. -++++.+ +|+...... ..... +...... .....+++++...+|+|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~----------~~~~~~~gv~~~~d~~~l~~~~DvV 72 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGE----------LAGIGKVGVPVTDDLEAVETDPDVL 72 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHH----------hcCcCcCCceeeCCHHHhcCCCCEE
Confidence 799999 69999999998874 5888665 664322110 00000 0000000 01236788876678999
Q ss_pred EEeec
Q 019081 230 VCCLS 234 (346)
Q Consensus 230 ~~~lP 234 (346)
+.+.|
T Consensus 73 IdfT~ 77 (266)
T TIGR00036 73 IDFTT 77 (266)
T ss_pred EECCC
Confidence 99875
No 430
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=90.33 E-value=1.2 Score=44.14 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=47.7
Q ss_pred ccCCCeEEEEec-----C---HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcC
Q 019081 150 TLLGKTVFILGF-----G---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE 217 (346)
Q Consensus 150 ~l~g~tvgIiG~-----G---~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 217 (346)
.+.|++|+|+|- | ++.++++..+..+|++|.+..|..-...... ...+ .+.....+ ...
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i---~~~a------~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEV---VEVA------KKNAKASGGSFRQVN 254 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHH---HHHH------HHHHHHcCCeEEEEc
Confidence 478999999985 5 5678999999999999999876421110000 0000 00011111 247
Q ss_pred CHHHHhhcCCEEEEe
Q 019081 218 DIFEFASKADVVVCC 232 (346)
Q Consensus 218 ~l~ell~~aDiV~~~ 232 (346)
++++.+++||+|..-
T Consensus 255 d~~eav~~aDvVYtd 269 (395)
T PRK07200 255 SMEEAFKDADIVYPK 269 (395)
T ss_pred CHHHHhCCCCEEEEc
Confidence 899999999999775
No 431
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.28 E-value=0.41 Score=43.26 Aligned_cols=38 Identities=29% Similarity=0.502 Sum_probs=33.9
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
++.++++.|+|. |.||+.+++.|...|++|++++|+..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999996 89999999999999999999998754
No 432
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=90.27 E-value=0.71 Score=44.62 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=59.2
Q ss_pred eEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCCccccccccccchhhhcccccccccccc------C-CcCCH
Q 019081 155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------G-CHEDI 219 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~l 219 (346)
+|+|+|. |.||..+|..+...|. ++..+|+........... .++.+.. . ...+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~-----------~Dl~d~~~~~~~~~~~~~~~ 69 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVV-----------MELMDCAFPLLDGVVPTHDP 69 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeE-----------eehhcccchhcCceeccCCh
Confidence 5899999 9999999998876444 588999854321000000 0111110 0 11255
Q ss_pred HHHhhcCCEEEEeecCCccccCC-----C--C-------HHHHccC-CCCcEEEEcCCCCCCCHHH
Q 019081 220 FEFASKADVVVCCLSLNKQTAGI-----V--N-------KSFLSSM-KKGSLLVNIARGGLLDYEA 270 (346)
Q Consensus 220 ~ell~~aDiV~~~lPlt~~T~~l-----i--~-------~~~l~~m-k~gailIN~sRg~~vd~~a 270 (346)
.+.+++||+|++..-. +...+. + | ...+... +|++++|.++ ..+|.-.
T Consensus 70 ~~~~~~aDiVVitAG~-~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 70 AVAFTDVDVAILVGAF-PRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred HHHhCCCCEEEEcCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 6889999999986543 222222 1 1 1234445 5889999987 5555443
No 433
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.26 E-value=0.41 Score=44.12 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=56.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh--hcCCE
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--SKADV 228 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~aDi 228 (346)
.|.++.|.|.|.+|..+++.++.+|.+ |++.+++..+..... +.+ ..+... ...+... ...|+
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~--------~~g----~~~~~~--~~~~~~~~~~~~d~ 162 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE--------ALG----PADPVA--ADTADEIGGRGADV 162 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH--------HcC----CCcccc--ccchhhhcCCCCCE
Confidence 578999999999999999999999999 988876543211000 000 000000 0000111 24788
Q ss_pred EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081 229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263 (346)
Q Consensus 229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg 263 (346)
++.++.... .-...++.|+++..+++++-.
T Consensus 163 vl~~~~~~~-----~~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 163 VIEASGSPS-----ALETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred EEEccCChH-----HHHHHHHHhcCCcEEEEEecc
Confidence 877654221 124567788999999988644
No 434
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.19 E-value=0.22 Score=46.75 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=35.8
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 185 (346)
|+......|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 54433467899999999999999999999998885 78888854
No 435
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=90.19 E-value=0.75 Score=44.21 Aligned_cols=76 Identities=20% Similarity=0.372 Sum_probs=49.0
Q ss_pred CeEEEEe-cCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG-~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~ 231 (346)
.+|+|+| .|.+|+++.+.|.... +++.....+... .. .+.++.++++|+|++
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~~-------~~~~~~~~~~DvvFl 56 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------DA-------AARRELLNAADVAIL 56 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------cc-------cCchhhhcCCCEEEE
Confidence 4799999 7999999999998654 355544322111 00 123456678999999
Q ss_pred eecCCccccCCCCHHHHccC-CCCcEEEEcC
Q 019081 232 CLSLNKQTAGIVNKSFLSSM-KKGSLLVNIA 261 (346)
Q Consensus 232 ~lPlt~~T~~li~~~~l~~m-k~gailIN~s 261 (346)
++|... ..+....+ +.|..+|+.|
T Consensus 57 alp~~~------s~~~~~~~~~~g~~VIDlS 81 (313)
T PRK11863 57 CLPDDA------AREAVALIDNPATRVIDAS 81 (313)
T ss_pred CCCHHH------HHHHHHHHHhCCCEEEECC
Confidence 998542 22222222 5688888887
No 436
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=90.18 E-value=0.6 Score=44.86 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=58.7
Q ss_pred eEEEEec-CHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhcccccccccc--ccCC---cCCHHHHhhcC
Q 019081 155 TVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGC---HEDIFEFASKA 226 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~l~ell~~a 226 (346)
+|+|||. |.||..+|-.+...| -++..+|.+... ....+. .+... .... ..++.+.+++|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-g~a~DL-----------~~~~~~~~i~~~~~~~~~~~~~~da 68 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-GVAADL-----------SHIPTAASVKGFSGEEGLENALKGA 68 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-EEEchh-----------hcCCcCceEEEecCCCchHHHcCCC
Confidence 6899999 999999999886545 479999986521 111100 00000 0000 12356789999
Q ss_pred CEEEEeecCCccccCC-----C--CH-------HHHccCCCCcEEEEcCCCCCCCH
Q 019081 227 DVVVCCLSLNKQTAGI-----V--NK-------SFLSSMKKGSLLVNIARGGLLDY 268 (346)
Q Consensus 227 DiV~~~lPlt~~T~~l-----i--~~-------~~l~~mk~gailIN~sRg~~vd~ 268 (346)
|+|+++.-.. ...++ + |. +.+..-.|++++|+++ ..+|.
T Consensus 69 DivvitaG~~-~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv 121 (312)
T TIGR01772 69 DVVVIPAGVP-RKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS 121 (312)
T ss_pred CEEEEeCCCC-CCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence 9999876532 21221 1 11 2344446899999995 44553
No 437
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=90.14 E-value=0.43 Score=43.18 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=33.4
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.+.||++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 378999999997 7999999999999999999998754
No 438
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.12 E-value=0.62 Score=43.91 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=45.6
Q ss_pred CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081 154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC 231 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~ 231 (346)
+++.|.|. |.||+.+++.|...|.+|++++|+.......... . ..... ......++.++++.+|+|+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--~--------~~~~~~D~~~~~~l~~~~~~~d~vi~ 70 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGL--D--------VEIVEGDLRDPASLRKAVAGCRALFH 70 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccC--C--------ceEEEeeCCCHHHHHHHHhCCCEEEE
Confidence 36889985 9999999999999999999999865431100000 0 00000 00122456778888999887
Q ss_pred eec
Q 019081 232 CLS 234 (346)
Q Consensus 232 ~lP 234 (346)
+.+
T Consensus 71 ~a~ 73 (328)
T TIGR03466 71 VAA 73 (328)
T ss_pred ece
Confidence 664
No 439
>PRK06057 short chain dehydrogenase; Provisional
Probab=90.09 E-value=0.44 Score=43.51 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=34.3
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.|+++.|+|. |.||+.+++.+...|++|++++++..
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~ 42 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE 42 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999999 99999999999999999999988643
No 440
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.01 E-value=0.38 Score=44.21 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=33.1
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
..|.+++|.|+|+|.+|..+++.|...|. +++.+|...
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45889999999999999999999998888 788888643
No 441
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.91 E-value=0.64 Score=45.96 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=34.9
Q ss_pred ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
+..-.++++.|+|. |.||+.+++.|...|++|++++|+..
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 45667889999996 99999999999999999999998653
No 442
>PLN02427 UDP-apiose/xylose synthase
Probab=89.91 E-value=0.74 Score=45.06 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=34.5
Q ss_pred CccccCCCeEEEEec-CHHHHHHHHHHccC-CCEEEEEcCCC
Q 019081 147 TGETLLGKTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSW 186 (346)
Q Consensus 147 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~~d~~~ 186 (346)
.|..+..++|.|.|. |-||+.+++.|... |.+|+++|++.
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 467788889999995 99999999999877 69999999754
No 443
>PRK06841 short chain dehydrogenase; Provisional
Probab=89.86 E-value=0.47 Score=43.17 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=34.1
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
++.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 578999999995 99999999999999999999988643
No 444
>PRK06523 short chain dehydrogenase; Provisional
Probab=89.83 E-value=0.48 Score=43.30 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=34.7
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.++.||++.|.|. |.||+.+|+.+...|++|++.+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 4688999999996 89999999999999999999988643
No 445
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.82 E-value=0.7 Score=44.72 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=31.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCc
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA 187 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~ 187 (346)
.|++|.|+|.|.+|...++.++.+|++ |++.+++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~ 212 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR 212 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 478999999999999999999999995 888887643
No 446
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=89.81 E-value=0.63 Score=44.46 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=31.6
Q ss_pred CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.|.++.|.|.|.+|+.+++.++.+|++|++++++.
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~ 203 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSP 203 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 46799999999999999999999999999988754
No 447
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=89.80 E-value=0.74 Score=44.63 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=57.6
Q ss_pred cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230 (346)
Q Consensus 151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 230 (346)
..|.+|.|.|.|.+|..+++.++..|.+|++.+++..+....... +. .+..... .....+.++....|+++
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~G-----a~~~i~~-~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LG-----ADDYLVS-SDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cC-----CcEEecC-CChHHHHHhcCCCcEEE
Confidence 357899999999999999999999999988887643221000000 00 0000000 00011233333568888
Q ss_pred EeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262 (346)
Q Consensus 231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sR 262 (346)
-+++... .-...++.++++..++.++.
T Consensus 250 d~~g~~~-----~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 250 DTVPVFH-----PLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ECCCchH-----HHHHHHHHhccCCEEEEECC
Confidence 7765321 12345677888888888864
No 448
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=89.76 E-value=0.39 Score=47.93 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=64.2
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee-
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL- 233 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l- 233 (346)
++.|||+|.+|.++|+.|+..|++|.++|............. .... ....-... .+ .+.+.++|+|+..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~--~~~~-----~gi~~~~g-~~-~~~~~~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQ--LRLN-----EGSVLHTG-LH-LEDLNNADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHH--Hhhc-----cCcEEEec-Cc-hHHhccCCEEEECCC
Confidence 478999999999999999999999999997543211100000 0000 00000001 23 34567899886643
Q ss_pred -cCC-cc-----cc--CCCCHH-HH-ccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081 234 -SLN-KQ-----TA--GIVNKS-FL-SSMKKGSLLVNIARGGLLDYEAIAHYLECG 278 (346)
Q Consensus 234 -Plt-~~-----T~--~li~~~-~l-~~mk~gailIN~sRg~~vd~~aL~~aL~~g 278 (346)
|.+ |+ -. .++.+- .+ ..++.-.+-|-=+.|..-...=+...|+..
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 322 11 11 233333 22 223333455555788887777777777753
No 449
>PRK08703 short chain dehydrogenase; Provisional
Probab=89.73 E-value=0.48 Score=42.72 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=34.6
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
..+.|+++.|.|. |.||+.+|+.+...|++|++++|+..
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~ 41 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK 41 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH
Confidence 3578899999996 89999999999999999999998764
No 450
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=89.66 E-value=0.18 Score=40.85 Aligned_cols=88 Identities=25% Similarity=0.426 Sum_probs=50.6
Q ss_pred ecCHHHHHHHHHHccC----CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCEEEEe
Q 019081 160 GFGNIGVELAKRLRPF----GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVVCC 232 (346)
Q Consensus 160 G~G~IG~~vA~~l~~~----G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~~~ 232 (346)
|+|.||+.+++.+... +++|.+ ++++ ....... ...........++++++. ..|+|+=+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDW-------------AASFPDEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTH-------------HHHHTHSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhh-------------hhhcccccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999999764 677655 4554 1100000 000111112468899988 89999998
Q ss_pred ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC
Q 019081 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL 266 (346)
Q Consensus 233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v 266 (346)
.+..+-+ .-..+.++.|.-+|-.+-|.+.
T Consensus 67 t~~~~~~-----~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 67 TSSEAVA-----EYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp SSCHHHH-----HHHHHHHHTTCEEEES-HHHHH
T ss_pred CCchHHH-----HHHHHHHHCCCeEEEECHHHhh
Confidence 5432221 2234446788888888888877
No 451
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.64 E-value=0.5 Score=42.44 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=33.8
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
++.|+++.|.|. |.||+.+++.+...|++|++++|+..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999997 77999999999999999999998654
No 452
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.64 E-value=0.72 Score=44.01 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=30.4
Q ss_pred CCeEEEEec-CHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 153 GKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 153 g~tvgIiG~-G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
|++|.|.|. |.+|...++.++.+|+ +|++.+++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~ 190 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD 190 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 489999998 9999999999999999 799987654
No 453
>PRK05442 malate dehydrogenase; Provisional
Probab=89.62 E-value=0.84 Score=44.15 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=60.2
Q ss_pred CeEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCCcc--ccccccccchhhhccccccccccccCCcCCHHHHh
Q 019081 154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWAS--HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA 223 (346)
Q Consensus 154 ~tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell 223 (346)
.+|+|||. |.||..+|..+...|. ++..+|.+... ....... .. +... .......-..+..+.+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D-l~----~~~~-~~~~~~~i~~~~y~~~ 78 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME-LD----DCAF-PLLAGVVITDDPNVAF 78 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh-hh----hhhh-hhcCCcEEecChHHHh
Confidence 48999998 9999999988764333 79999985422 1110000 00 0000 0000000113556788
Q ss_pred hcCCEEEEeecCCccccCCC-------CH-------HHHcc-CCCCcEEEEcCCCCCCCHHHHHH
Q 019081 224 SKADVVVCCLSLNKQTAGIV-------NK-------SFLSS-MKKGSLLVNIARGGLLDYEAIAH 273 (346)
Q Consensus 224 ~~aDiV~~~lPlt~~T~~li-------~~-------~~l~~-mk~gailIN~sRg~~vd~~aL~~ 273 (346)
++||+|+++.-. +...++- |. +.+.. -++.+++|.++ ..+|.-.-+-
T Consensus 79 ~daDiVVitaG~-~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~ 140 (326)
T PRK05442 79 KDADVALLVGAR-PRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIA 140 (326)
T ss_pred CCCCEEEEeCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHH
Confidence 999999986642 2222321 11 12333 33789999997 5565544333
No 454
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=89.60 E-value=0.39 Score=44.76 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=37.0
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
|+......|...+|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus 16 wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~ 60 (287)
T PTZ00245 16 WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL 60 (287)
T ss_pred hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence 76555577999999999999999999999998888 577877643
No 455
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=89.46 E-value=0.8 Score=42.45 Aligned_cols=57 Identities=28% Similarity=0.379 Sum_probs=41.6
Q ss_pred eEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC--CEEEE
Q 019081 155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA--DVVVC 231 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~~ 231 (346)
++.|+|. |.||+.+++.|...|.+|++++|+... .. ...++.+++..+ |+|+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d--------------------~~----~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLD--------------------LT----DPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccC--------------------CC----CHHHHHHHHHhCCCCEEEE
Confidence 4678895 999999999999999999999875211 10 123566677665 99987
Q ss_pred eecC
Q 019081 232 CLSL 235 (346)
Q Consensus 232 ~lPl 235 (346)
+...
T Consensus 57 ~a~~ 60 (287)
T TIGR01214 57 TAAY 60 (287)
T ss_pred CCcc
Confidence 6653
No 456
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.38 E-value=0.55 Score=43.17 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=34.2
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.+|++.|.|. |.||+++|+.+...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999997 99999999999999999999998753
No 457
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=89.28 E-value=1.2 Score=42.37 Aligned_cols=35 Identities=37% Similarity=0.263 Sum_probs=30.5
Q ss_pred CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.||++.|.|. |.||+.+++.|...|++|++..++.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 3789999995 9999999999999999998876654
No 458
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=89.26 E-value=0.55 Score=40.12 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=24.3
Q ss_pred eEEEEecCHHHHHHHHHHc-cCCCEEEEEc
Q 019081 155 TVFILGFGNIGVELAKRLR-PFGVKIIATK 183 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d 183 (346)
+|||+|+|+||+.+++.+. .-++++.+..
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~ 31 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAIN 31 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEee
Confidence 7999999999999999876 4578877643
No 459
>PRK06196 oxidoreductase; Provisional
Probab=89.25 E-value=0.4 Score=45.58 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=34.5
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
..+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4578999999998 88999999999999999999988653
No 460
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.12 E-value=1.4 Score=42.97 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.7
Q ss_pred CeEEEEe-cCHHHHHHHHHHccCC-CEEEEEcC
Q 019081 154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKR 184 (346)
Q Consensus 154 ~tvgIiG-~G~IG~~vA~~l~~~G-~~V~~~d~ 184 (346)
.+|+|+| .|.+|+.+++.|..+. +++.++.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~ 36 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAA 36 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence 5899998 9999999999998654 48888733
No 461
>PRK05717 oxidoreductase; Validated
Probab=89.11 E-value=0.57 Score=42.76 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=34.2
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
..+.||++.|.|. |.||+.+|+.+...|++|+..+++.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5688999999996 8999999999999999999998764
No 462
>PRK07576 short chain dehydrogenase; Provisional
Probab=89.01 E-value=0.59 Score=43.11 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=34.9
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.++.+|++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~ 44 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQE 44 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4688999999998 89999999999999999999998643
No 463
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=88.91 E-value=0.67 Score=46.55 Aligned_cols=33 Identities=39% Similarity=0.597 Sum_probs=28.7
Q ss_pred eEEEEecCHHHHHHHHHHccCCC------EEEEEcCCCc
Q 019081 155 TVFILGFGNIGVELAKRLRPFGV------KIIATKRSWA 187 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~~~~ 187 (346)
+|.|||+|.+|.++++.|...|. ++.++|...-
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCc
Confidence 58899999999999999998887 7999986543
No 464
>PRK06179 short chain dehydrogenase; Provisional
Probab=88.89 E-value=0.71 Score=42.44 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=31.0
Q ss_pred CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.++++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~ 39 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPA 39 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 3568888884 89999999999999999999998654
No 465
>PRK08339 short chain dehydrogenase; Provisional
Probab=88.89 E-value=0.58 Score=43.24 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.6
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.||++.|.|. |.||+++|+.|...|++|++++|+..
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~ 43 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEE 43 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999997 57999999999999999999998643
No 466
>PRK07060 short chain dehydrogenase; Provisional
Probab=88.86 E-value=0.68 Score=41.67 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=34.5
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
..+.++++.|.|. |.||+.+++.+...|++|++++|+..
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~ 44 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAA 44 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3478899999998 89999999999999999999998653
No 467
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.80 E-value=0.65 Score=42.00 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=33.9
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.++++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~ 41 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAE 41 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999997 99999999999999999999998643
No 468
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=88.78 E-value=0.99 Score=44.32 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=31.5
Q ss_pred CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.++|+|+|.|..|+.+++.++.+|++|+.+|.++.
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~ 46 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 56899999999999999999999999999987653
No 469
>PRK15076 alpha-galactosidase; Provisional
Probab=88.77 E-value=0.51 Score=47.43 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=67.5
Q ss_pred CeEEEEecCHHHHHHHH--HH---ccC-CCEEEEEcCCCccccccccccchhhhcccccccccccc------CCcCCHHH
Q 019081 154 KTVFILGFGNIGVELAK--RL---RPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------GCHEDIFE 221 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~--~l---~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~e 221 (346)
.+|+|||.|.+|...+- .+ .++ |.+|+.+|....+....... . ....... ....++.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~---------~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-A---------RKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-H---------HHHHHhcCCCeEEEEECCHHH
Confidence 48999999999944433 22 333 56999999876432100000 0 0000110 12457889
Q ss_pred HhhcCCEEEEeecCCccc-c-----------CCC-----------------C-------HHHHccCCCCcEEEEcCCCCC
Q 019081 222 FASKADVVVCCLSLNKQT-A-----------GIV-----------------N-------KSFLSSMKKGSLLVNIARGGL 265 (346)
Q Consensus 222 ll~~aDiV~~~lPlt~~T-~-----------~li-----------------~-------~~~l~~mk~gailIN~sRg~~ 265 (346)
.++.||+|+.++-..... . |++ + .+.++...|++++||++-.-=
T Consensus 72 al~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d 151 (431)
T PRK15076 72 ALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA 151 (431)
T ss_pred HhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH
Confidence 999999999877542111 1 111 1 122344468999999987765
Q ss_pred CCHHHHHHHHHhCCCeEEE
Q 019081 266 LDYEAIAHYLECGHLGGLG 284 (346)
Q Consensus 266 vd~~aL~~aL~~g~i~ga~ 284 (346)
+-+.++. -+...++-|.+
T Consensus 152 ivt~~~~-~~~~~rviG~c 169 (431)
T PRK15076 152 MNTWAMN-RYPGIKTVGLC 169 (431)
T ss_pred HHHHHHh-cCCCCCEEEEC
Confidence 5555555 22344565553
No 470
>PRK06949 short chain dehydrogenase; Provisional
Probab=88.76 E-value=0.65 Score=42.21 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=34.5
Q ss_pred cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
..+.++++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~ 44 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVE 44 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3578999999996 99999999999999999999988653
No 471
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.73 E-value=0.31 Score=46.21 Aligned_cols=44 Identities=34% Similarity=0.455 Sum_probs=36.7
Q ss_pred cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (346)
Q Consensus 143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~ 186 (346)
|+......|...+|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus 9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 44434467899999999999999999999998898 588998754
No 472
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=88.70 E-value=6.2 Score=37.65 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=65.9
Q ss_pred cCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhc
Q 019081 151 LLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK 225 (346)
Q Consensus 151 l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~ 225 (346)
|.|+|+..+|=| +++.++...+..+||+|....|..-........ . ....+...+ -..+.++.++.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~---~------a~~~a~~~g~~i~~t~d~~eAv~g 221 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVE---K------AKENAKESGGKITLTEDPEEAVKG 221 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH---H------HHHHHHhcCCeEEEecCHHHHhCC
Confidence 999999999976 688888888889999999876643221000000 0 001111111 23689999999
Q ss_pred CCEEEEeecCC--cccc-----------CCCCHHHHccCCCCcEEEEc
Q 019081 226 ADVVVCCLSLN--KQTA-----------GIVNKSFLSSMKKGSLLVNI 260 (346)
Q Consensus 226 aDiV~~~lPlt--~~T~-----------~li~~~~l~~mk~gailIN~ 260 (346)
||+|..-+... ++.+ .-+|.+.++.-+++++|.-|
T Consensus 222 ADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 222 ADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred CCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 99997655432 2221 56778888888888888877
No 473
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.66 E-value=0.6 Score=42.06 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=33.4
Q ss_pred ccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 150 ~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.+.++++.|.| .|.||+.+++.+...|++|++++|+.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999 79999999999999999999999874
No 474
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=88.63 E-value=0.93 Score=44.17 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=49.3
Q ss_pred CCCeEEEEec-CHHHHHHHHHHccCCC---EEEEEc--CCCccccccccccchhhhccccccccccccCCcCCHHHHhhc
Q 019081 152 LGKTVFILGF-GNIGVELAKRLRPFGV---KIIATK--RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 225 (346)
Q Consensus 152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~---~V~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 225 (346)
...+|+|+|. |.+|+.+.+.|..-++ ++..+. ++..+... + ....-.....+. +.+.+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~-------~--------~~~~~~v~~~~~-~~~~~ 69 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVT-------F--------EGRDYTVEELTE-DSFDG 69 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeee-------e--------cCceeEEEeCCH-HHHcC
Confidence 3568999995 9999999999987554 343332 22111000 0 000000011122 34588
Q ss_pred CCEEEEeecCCccccCCCCHHHHcc-CCCCcEEEEcC
Q 019081 226 ADVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIA 261 (346)
Q Consensus 226 aDiV~~~lPlt~~T~~li~~~~l~~-mk~gailIN~s 261 (346)
+|+|++++|.. . ..+.... .+.|+.+|+.|
T Consensus 70 ~D~vf~a~p~~-~-----s~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 70 VDIALFSAGGS-I-----SKKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred CCEEEECCCcH-H-----HHHHHHHHHhCCCEEEECC
Confidence 99999999854 2 2233222 25688888887
No 475
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.61 E-value=0.78 Score=43.52 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=31.2
Q ss_pred CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
.|.+|.|.| .|.+|..+++.++.+|++|++.+++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999 59999999999999999999887654
No 476
>PRK05866 short chain dehydrogenase; Provisional
Probab=88.54 E-value=0.75 Score=43.38 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=36.3
Q ss_pred CccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 147 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+..+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED 75 (293)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 356789999999996 99999999999999999999998753
No 477
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.53 E-value=0.59 Score=42.83 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=33.3
Q ss_pred ccCCCeEEEEec-C-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G-~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.++++.|.|. | .||+++++.+...|++|++.+++..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~ 53 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHER 53 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467899999997 6 6999999999999999999887653
No 478
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=88.46 E-value=7.7 Score=37.13 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=30.5
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCC
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS 185 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~ 185 (346)
.+.|++|+++|= -++.++++..+..||++|.+..|.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~ 180 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPP 180 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCc
Confidence 478999999997 456788888999999999998764
No 479
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=88.46 E-value=1.7 Score=41.70 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=27.8
Q ss_pred CeEEEEecCHHHHHHHHHHcc--CCCEEEEEcCCC
Q 019081 154 KTVFILGFGNIGVELAKRLRP--FGVKIIATKRSW 186 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~--~G~~V~~~d~~~ 186 (346)
++|+|||.|.||+.+|-.+.. +|-++..||...
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~ 35 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINE 35 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEccc
Confidence 489999999999999998853 455899999873
No 480
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.40 E-value=0.5 Score=45.10 Aligned_cols=124 Identities=18% Similarity=0.140 Sum_probs=69.0
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l 233 (346)
.+++|+|.|.||.-+|-.|...|.+|..++|...... ......++.+... .... .......-.+....+|+|++++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~-~i~~~~Gl~i~~~--g~~~-~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLA-AYQQAGGLTLVEQ--GQAS-LYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHH-HHhhcCCeEEeeC--Ccce-eeccCCCCcccccccCEEEEEC
Confidence 4799999999999999999999999999998532110 0000001100000 0000 0000011112246789999987
Q ss_pred cCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEE
Q 019081 234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG 284 (346)
Q Consensus 234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~ 284 (346)
-.. ++...+ +.....+.+++.+|-. --++-.++.+.+.+...++.++.
T Consensus 79 K~~-~~~~al-~~l~~~l~~~t~vv~l-QNGv~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 79 KAY-DAEPAV-ASLAHRLAPGAELLLL-QNGLGSQDAVAARVPHARCIFAS 126 (305)
T ss_pred CHH-hHHHHH-HHHHhhCCCCCEEEEE-eCCCCCHHHHHHhCCCCcEEEEE
Confidence 533 233222 2233445677776666 44455667777887666665543
No 481
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.39 E-value=0.67 Score=42.47 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=32.6
Q ss_pred ccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCC
Q 019081 150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (346)
Q Consensus 150 ~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~ 185 (346)
.+.||++.|.|.+ .||+++|+.|...|++|+..+|+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 3789999999986 89999999999999999998875
No 482
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.30 E-value=0.62 Score=43.35 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=32.6
Q ss_pred cCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCCC
Q 019081 151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 151 l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
+.||++.|.|.+ .||+++|+.|...|++|+..+|+.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~ 43 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGE 43 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCch
Confidence 678999999998 699999999999999999988753
No 483
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.25 E-value=0.65 Score=42.70 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=33.5
Q ss_pred cccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCCC
Q 019081 149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 149 ~~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
..+.||++.|.|.+ .||+++|+.+...|++|+..+++.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 45789999999986 799999999999999999888764
No 484
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=88.07 E-value=0.53 Score=49.33 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=32.9
Q ss_pred cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (346)
Q Consensus 149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 185 (346)
..|.+.+|.|+|+|.+|..+|+.|.+.|. +++.+|..
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 57899999999999999999999999998 57777753
No 485
>PRK09186 flagellin modification protein A; Provisional
Probab=88.01 E-value=0.64 Score=42.20 Aligned_cols=37 Identities=38% Similarity=0.455 Sum_probs=32.8
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
+.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~ 39 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE 39 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence 56899999996 79999999999999999999987653
No 486
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=88.00 E-value=1.7 Score=41.68 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=48.9
Q ss_pred eEEEEec-CHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081 155 TVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
+|+|+|. |..|.++.++|... .+++.....+... ...+.+++++++|+++++
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------------------------~~~~~~~~~~~~D~vFla 56 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------------------------DAAERAKLLNAADVAILC 56 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------------------------CcCCHhHhhcCCCEEEEC
Confidence 7899985 99999999999864 4566554321100 112455777889999999
Q ss_pred ecCCccccCCCCHHHHcc-CCCCcEEEEcC
Q 019081 233 LSLNKQTAGIVNKSFLSS-MKKGSLLVNIA 261 (346)
Q Consensus 233 lPlt~~T~~li~~~~l~~-mk~gailIN~s 261 (346)
+|.. .+. +.... .+.|+.+|+.|
T Consensus 57 lp~~-~s~-----~~~~~~~~~g~~VIDlS 80 (310)
T TIGR01851 57 LPDD-AAR-----EAVSLVDNPNTCIIDAS 80 (310)
T ss_pred CCHH-HHH-----HHHHHHHhCCCEEEECC
Confidence 9854 222 22222 24678888887
No 487
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.99 E-value=0.75 Score=49.94 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=64.1
Q ss_pred CeEEEEecCHHHHHH-HHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081 154 KTVFILGFGNIGVEL-AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232 (346)
Q Consensus 154 ~tvgIiG~G~IG~~v-A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~ 232 (346)
+++.|+|+|.+|.+. |+.|+..|++|.++|......... .. ......... .-.+.+..+|+|+..
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~-L~-----------~~gi~~~~g--~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEK-LK-----------AKGARFFLG--HQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHH-HH-----------HCCCEEeCC--CCHHHcCCCCEEEEC
Confidence 368999999999998 999999999999999754321000 00 000000001 122556789998775
Q ss_pred ecCCccc----------cCCCCHHHH-cc-CCC-CcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081 233 LSLNKQT----------AGIVNKSFL-SS-MKK-GSLLVNIARGGLLDYEAIAHYLECG 278 (346)
Q Consensus 233 lPlt~~T----------~~li~~~~l-~~-mk~-gailIN~sRg~~vd~~aL~~aL~~g 278 (346)
---.+.+ ..++++-.+ .. ++. ..+-|-=+.|..-...=+...|++.
T Consensus 71 pgI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 71 SSISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred CCcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 2222221 123444333 23 332 2445555678877777777777763
No 488
>PRK06172 short chain dehydrogenase; Provisional
Probab=87.98 E-value=0.79 Score=41.62 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=34.0
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.+|++.|.|. |.||+.+|+.|...|++|++++|+..
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 42 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA 42 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999996 79999999999999999999998754
No 489
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=87.98 E-value=2.4 Score=42.80 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=66.1
Q ss_pred eEEEEec-CHHHHHHHHHHccC-------CC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081 155 TVFILGF-GNIGVELAKRLRPF-------GV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224 (346)
Q Consensus 155 tvgIiG~-G~IG~~vA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 224 (346)
+|+|||. |.||..+|-.+... |. +++.+|++............ +... .+.....-..+-.+.++
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~-----daa~-~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELE-----DSLY-PLLREVSIGIDPYEVFQ 175 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHH-----Hhhh-hhcCceEEecCCHHHhC
Confidence 8999999 99999999988654 44 78888987654211110000 0000 00000000123457789
Q ss_pred cCCEEEEeecCCccccCC------------CC--HHHHcc-CCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081 225 KADVVVCCLSLNKQTAGI------------VN--KSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECG 278 (346)
Q Consensus 225 ~aDiV~~~lPlt~~T~~l------------i~--~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g 278 (346)
+||+|++..-. +...++ +. ...+.. -.+++++|.++ ..+|.-..+-.=.+|
T Consensus 176 daDiVVitAG~-prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~sg 241 (444)
T PLN00112 176 DAEWALLIGAK-PRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNAP 241 (444)
T ss_pred cCCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHcC
Confidence 99999997643 232332 11 123444 47899999996 667766655544443
No 490
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.96 E-value=0.76 Score=41.86 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=34.1
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
.+.||++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 44 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLD 44 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 478999999997 89999999999999999999988653
No 491
>PRK07890 short chain dehydrogenase; Provisional
Probab=87.95 E-value=0.69 Score=42.07 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=33.2
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
+.+|++.|.|. |.||+.+|+.+...|++|++.+|+..
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~ 40 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE 40 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 57899999996 89999999999999999999998653
No 492
>PRK08862 short chain dehydrogenase; Provisional
Probab=87.95 E-value=0.71 Score=41.84 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=33.7
Q ss_pred ccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
++.||++.|.|.+. ||+++|+.+...|++|+..+|+..
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 47899999999876 999999999999999999988654
No 493
>PRK06398 aldose dehydrogenase; Validated
Probab=87.92 E-value=0.79 Score=42.11 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=33.7
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
++.||++.|.|. |.||+++|+.+...|++|+..+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 578999999995 69999999999999999999988653
No 494
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.91 E-value=0.65 Score=46.69 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=30.3
Q ss_pred eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
+|.|||+|..|.+.|+.|...|++|.++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 689999999999999999999999999997654
No 495
>PRK12320 hypothetical protein; Provisional
Probab=87.89 E-value=1.1 Score=47.77 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=45.8
Q ss_pred eEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081 155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233 (346)
Q Consensus 155 tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l 233 (346)
+|.|.| .|-||+.+++.|...|++|+++++......... .+....-.....+.+++..+|+|+.+.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~~~~-------------ve~v~~Dl~d~~l~~al~~~D~VIHLA 68 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDALDPR-------------VDYVCASLRNPVLQELAGEADAVIHLA 68 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcccCC-------------ceEEEccCCCHHHHHHhcCCCEEEEcC
Confidence 688999 699999999999999999999997543210000 011110001123567778899999988
Q ss_pred cCC
Q 019081 234 SLN 236 (346)
Q Consensus 234 Plt 236 (346)
+..
T Consensus 69 a~~ 71 (699)
T PRK12320 69 PVD 71 (699)
T ss_pred ccC
Confidence 754
No 496
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=87.83 E-value=0.76 Score=42.16 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.4
Q ss_pred cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (346)
Q Consensus 151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~ 186 (346)
+.+|++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999997 6899999999999999999998864
No 497
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=87.75 E-value=0.81 Score=33.49 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=26.6
Q ss_pred EEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 158 ILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 158 IiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
|||.|.-|-..|..|+..|++|.+++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998653
No 498
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=87.75 E-value=1.1 Score=41.43 Aligned_cols=64 Identities=23% Similarity=0.174 Sum_probs=41.3
Q ss_pred EEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081 157 FILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234 (346)
Q Consensus 157 gIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP 234 (346)
.|.| .|.||+.+++.|...|++|++++|+......... ...... ......+.+..+|+|+.+..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------------~~~~~~-~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW-------------EGYKPW-APLAESEALEGADAVINLAG 66 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc-------------eeeecc-cccchhhhcCCCCEEEECCC
Confidence 4666 6999999999999899999999987654211000 000000 11344566788998877664
No 499
>PRK08264 short chain dehydrogenase; Validated
Probab=87.73 E-value=0.72 Score=41.44 Aligned_cols=39 Identities=31% Similarity=0.437 Sum_probs=33.9
Q ss_pred ccCCCeEEEEec-CHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081 150 TLLGKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWAS 188 (346)
Q Consensus 150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 188 (346)
.+.++++.|+|. |.||+.+|+.|...|+ +|+.++|+..+
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~ 43 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES 43 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence 467899999995 9999999999999999 99999886543
No 500
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=87.67 E-value=0.65 Score=46.97 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=31.1
Q ss_pred CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (346)
Q Consensus 154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 187 (346)
+++.|||.|.||-++|..++.||.+|+++.+...
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~ 207 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR 207 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 5799999999999999999999999999987654
Done!