Query 019083
Match_columns 346
No_of_seqs 228 out of 1239
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:32:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 4.1E-85 8.8E-90 642.9 27.7 325 20-345 14-373 (408)
2 KOG2288 Galactosyltransferases 100.0 1.4E-69 3.1E-74 499.8 15.2 227 116-345 8-238 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 5E-49 1.1E-53 406.9 22.7 219 117-344 383-609 (636)
4 PF01762 Galactosyl_T: Galacto 100.0 7.6E-47 1.6E-51 341.7 15.9 191 133-330 1-195 (195)
5 KOG2287 Galactosyltransferases 100.0 1.5E-45 3.4E-50 362.1 20.6 206 118-331 94-303 (349)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 3.1E-32 6.7E-37 265.5 15.6 189 116-323 77-307 (382)
7 PF13334 DUF4094: Domain of un 99.8 1.9E-20 4.1E-25 151.9 3.5 77 23-101 1-95 (95)
8 PF02434 Fringe: Fringe-like; 99.8 3.3E-18 7.2E-23 161.6 12.3 193 120-338 7-211 (252)
9 KOG2246 Galactosyltransferases 99.6 3E-15 6.5E-20 148.2 12.4 170 115-330 87-269 (364)
10 PLN03153 hypothetical protein; 99.2 5E-10 1.1E-14 114.1 14.8 179 118-335 121-318 (537)
11 KOG3708 Uncharacterized conser 96.6 0.0085 1.8E-07 61.7 8.5 97 201-320 79-182 (681)
12 PF13641 Glyco_tranf_2_3: Glyc 94.5 1.1 2.5E-05 40.0 13.3 116 207-325 77-198 (228)
13 TIGR03472 HpnI hopanoid biosyn 94.4 0.93 2E-05 45.0 13.6 157 156-325 70-241 (373)
14 PF13506 Glyco_transf_21: Glyc 94.4 0.052 1.1E-06 48.5 4.2 129 200-330 15-147 (175)
15 PF01755 Glyco_transf_25: Glyc 93.7 1 2.2E-05 40.2 11.4 94 123-232 4-101 (200)
16 TIGR03469 HonB hopene-associat 93.6 2.7 5.9E-05 41.9 15.3 156 157-323 71-248 (384)
17 cd02520 Glucosylceramide_synth 92.2 3.8 8.3E-05 36.1 12.7 134 156-325 30-165 (196)
18 cd02525 Succinoglycan_BP_ExoA 91.4 10 0.00022 33.9 15.3 122 207-332 72-205 (249)
19 cd02510 pp-GalNAc-T pp-GalNAc- 89.7 16 0.00034 34.7 15.1 124 208-331 75-221 (299)
20 cd04192 GT_2_like_e Subfamily 89.3 11 0.00023 33.3 12.9 120 208-329 74-203 (229)
21 cd04185 GT_2_like_b Subfamily 89.3 14 0.0003 32.2 13.8 92 204-323 68-160 (202)
22 PF13632 Glyco_trans_2_3: Glyc 88.2 1.3 2.9E-05 38.8 6.2 115 219-337 1-126 (193)
23 PF00535 Glycos_transf_2: Glyc 88.0 6.4 0.00014 32.2 10.0 92 207-298 69-168 (169)
24 cd02526 GT2_RfbF_like RfbF is 87.3 16 0.00034 32.7 12.8 128 204-333 64-202 (237)
25 cd06439 CESA_like_1 CESA_like_ 86.7 16 0.00034 33.2 12.6 111 208-324 101-216 (251)
26 cd06423 CESA_like CESA_like is 86.5 6.4 0.00014 32.2 9.1 93 207-299 69-170 (180)
27 cd04186 GT_2_like_c Subfamily 86.1 18 0.00039 29.8 13.6 83 215-328 73-158 (166)
28 cd04196 GT_2_like_d Subfamily 85.3 14 0.0003 32.2 11.1 114 212-330 75-198 (214)
29 cd06532 Glyco_transf_25 Glycos 84.3 12 0.00026 31.3 9.8 116 124-303 3-118 (128)
30 cd06420 GT2_Chondriotin_Pol_N 83.6 7.5 0.00016 33.2 8.4 95 209-323 72-166 (182)
31 cd06421 CESA_CelA_like CESA_Ce 83.5 5.7 0.00012 35.3 8.0 121 208-332 76-208 (234)
32 PRK11204 N-glycosyltransferase 83.2 48 0.001 33.0 15.2 146 174-330 98-255 (420)
33 cd06434 GT2_HAS Hyaluronan syn 83.1 9.4 0.0002 34.1 9.2 155 157-325 29-201 (235)
34 cd06433 GT_2_WfgS_like WfgS an 79.4 9.5 0.00021 32.6 7.7 114 207-325 66-182 (202)
35 cd04187 DPM1_like_bac Bacteria 79.4 14 0.0003 31.8 8.7 134 156-300 29-164 (181)
36 COG1216 Predicted glycosyltran 78.1 11 0.00024 36.2 8.3 134 184-323 55-206 (305)
37 cd06442 DPM1_like DPM1_like re 76.7 48 0.001 29.1 11.6 81 216-299 78-167 (224)
38 cd06435 CESA_NdvC_like NdvC_li 76.1 57 0.0012 29.1 12.3 117 207-329 73-203 (236)
39 cd06427 CESA_like_2 CESA_like_ 74.6 57 0.0012 29.6 11.8 120 207-329 75-206 (241)
40 TIGR01556 rhamnosyltran L-rham 72.9 81 0.0018 29.3 12.9 34 207-241 65-98 (281)
41 cd04184 GT2_RfbC_Mx_like Myxoc 70.8 69 0.0015 27.6 15.4 109 208-325 75-189 (202)
42 cd02514 GT13_GLCNAC-TI GT13_GL 68.3 17 0.00036 36.2 7.1 86 204-298 85-174 (334)
43 COG1215 Glycosyltransferases, 68.2 38 0.00083 33.5 9.8 160 157-330 85-260 (439)
44 cd02522 GT_2_like_a GT_2_like_ 67.8 52 0.0011 28.8 9.6 110 209-324 65-174 (221)
45 cd04179 DPM_DPG-synthase_like 65.0 38 0.00082 28.7 7.9 130 157-299 29-167 (185)
46 PF04646 DUF604: Protein of un 63.5 12 0.00026 35.8 4.8 49 284-332 12-64 (255)
47 cd06437 CESA_CaSu_A2 Cellulose 63.5 40 0.00087 30.2 8.2 120 208-333 79-211 (232)
48 TIGR03111 glyc2_xrt_Gpos1 puta 61.6 1.6E+02 0.0035 29.8 13.0 110 207-319 122-248 (439)
49 cd00761 Glyco_tranf_GTA_type G 60.3 81 0.0018 24.7 11.2 32 209-240 70-101 (156)
50 cd04195 GT2_AmsE_like GT2_AmsE 59.5 1.2E+02 0.0025 26.2 13.5 115 208-330 72-196 (201)
51 PF10111 Glyco_tranf_2_2: Glyc 58.7 1.6E+02 0.0036 27.7 13.7 163 155-324 33-209 (281)
52 cd04190 Chitin_synth_C C-termi 56.3 24 0.00051 32.5 5.4 105 215-323 72-206 (244)
53 PRK10714 undecaprenyl phosphat 49.7 79 0.0017 30.9 8.1 134 156-300 38-174 (325)
54 PRK14583 hmsR N-glycosyltransf 49.7 2.9E+02 0.0064 27.9 16.3 156 156-325 104-269 (444)
55 cd06438 EpsO_like EpsO protein 45.6 1.9E+02 0.0042 24.7 10.1 88 206-297 70-169 (183)
56 cd04188 DPG_synthase DPG_synth 41.8 2.2E+02 0.0048 24.9 9.2 89 156-252 30-119 (211)
57 cd04191 Glucan_BSP_ModH Glucan 39.9 3.2E+02 0.007 25.6 14.2 120 199-325 77-219 (254)
58 PLN02726 dolichyl-phosphate be 31.3 4E+02 0.0086 24.1 14.7 91 207-300 84-183 (243)
59 TIGR03030 CelA cellulose synth 27.7 1.6E+02 0.0036 32.1 7.0 128 199-332 212-355 (713)
60 PLN03181 glycosyltransferase; 27.5 2.9E+02 0.0064 28.6 8.2 92 136-229 109-211 (453)
61 PF03742 PetN: PetN ; InterPr 26.8 86 0.0019 20.1 2.7 22 23-44 5-26 (29)
62 PF06072 Herpes_US9: Alphaherp 26.5 63 0.0014 24.2 2.4 16 27-42 42-57 (60)
63 PF09258 Glyco_transf_64: Glyc 24.9 70 0.0015 30.2 3.1 37 216-252 75-111 (247)
64 cd06913 beta3GnTL1_like Beta 1 24.5 4.8E+02 0.01 22.8 11.2 44 209-252 77-120 (219)
65 PF03452 Anp1: Anp1; InterPro 24.1 5E+02 0.011 25.1 8.8 87 155-242 55-168 (269)
66 smart00786 SHR3_chaperone ER m 23.8 90 0.002 28.8 3.5 30 25-54 8-43 (196)
67 PF06306 CgtA: Beta-1,4-N-acet 23.4 2.2E+02 0.0048 28.5 6.2 67 174-240 128-199 (347)
68 PF04666 Glyco_transf_54: N-Ac 23.4 2.7E+02 0.0058 27.3 6.9 22 215-236 168-189 (297)
69 COG4092 Predicted glycosyltran 22.5 2.8E+02 0.0062 27.2 6.6 159 155-319 37-214 (346)
70 PRK05454 glucosyltransferase M 20.4 1.2E+03 0.025 25.7 11.7 197 118-330 123-351 (691)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.1e-85 Score=642.94 Aligned_cols=325 Identities=40% Similarity=0.734 Sum_probs=282.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccccccccchHHHH------Hhhhhccc-CCCcc----c---cccccc-ccc----c
Q 019083 20 QIHTSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLS------NFLKKSME-QRPKV----L---TVEDKL-MLL----G 80 (346)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~----~---~~~~~~-~~~----~ 80 (346)
+.+|++|+++||++|||+|++||+|||..||.....+ ++++..++ ++++. . ...|.+ +|. +
T Consensus 14 ~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~t~~~ 93 (408)
T PLN03193 14 SVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSKTHNA 93 (408)
T ss_pred ccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccchhHHHHHHhhHHHH
Confidence 5689999999999999999999999999998776643 33333332 33322 1 233444 444 8
Q ss_pred chhhhhhHHHhhhhhhhhhhcCc--ccccccc-----CCCCCCCceEEEEEEEcCCCCHHHHHHHHHHhccCCcchhhhh
Q 019083 81 CKDLERRIVEAEMDLTLAKSQGY--LKNQLLQ-----SGSSSGKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLE 153 (346)
Q Consensus 81 ~~~~~~~~~~le~~l~~~~~~~~--~~~~~~~-----~~~~~~~k~~llI~I~S~~~~~~rR~aIR~TW~~~~~~l~~l~ 153 (346)
||+|||+|++|||||++|++.++ .++.+.. .....++++++||+|+|+|+|++||++||+|||+.+..+.+++
T Consensus 94 ~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle 173 (408)
T PLN03193 94 IQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLE 173 (408)
T ss_pred HHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccc
Confidence 99999999999999999999665 3332211 1234566799999999999999999999999999887666676
Q ss_pred -cCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHH
Q 019083 154 -ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLE 232 (346)
Q Consensus 154 -~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~ 232 (346)
+.|+.+|||||+++++++.++++|++|+++|+|||++ ||+|+|.|||.||+++|+|+.++++++||+|+|||+|||++
T Consensus 174 ~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-DfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~ 252 (408)
T PLN03193 174 EEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-DHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIA 252 (408)
T ss_pred cCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-ecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHH
Confidence 6889999999999877778999999999999999999 69999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccC-CCCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcC
Q 019083 233 GLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFG-DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHD 311 (346)
Q Consensus 233 ~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~-~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~E 311 (346)
+|+.+|..++.++++|+|||+.+|+..+++.|||+|+||+|+ +++.|||||+|++||||+|+|++|+.+.+.++.|++|
T Consensus 253 ~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~E 332 (408)
T PLN03193 253 TLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANE 332 (408)
T ss_pred HHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcc
Confidence 999999988778889999999887777778899999999987 5899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCcEecCCCcccCCCC-------CCCcccc
Q 019083 312 DTSVGSWMMGVRATYKDDNRFCCSSIN-------RDKVCSM 345 (346)
Q Consensus 312 DV~iG~wl~~l~v~~vd~~~fc~~~~~-------~~~~c~~ 345 (346)
||++|+|+.||+|+|+||++|||++|+ +||+|+|
T Consensus 333 DV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~ 373 (408)
T PLN03193 333 DVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVA 373 (408)
T ss_pred hhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEE
Confidence 999999999999999999999999874 6999987
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-69 Score=499.84 Aligned_cols=227 Identities=55% Similarity=0.977 Sum_probs=220.1
Q ss_pred CCceEEEEEEEcCCCCHHHHHHHHHHhccCCcchhhhh-cCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCc
Q 019083 116 GKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLE-ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHE 194 (346)
Q Consensus 116 ~~k~~llI~I~S~~~~~~rR~aIR~TW~~~~~~l~~l~-~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~ 194 (346)
+++++++|||+|+|++.+||+++|+|||+.++.+++++ ++||.+|||||+ ++.+++.+++|++|+++|+|+++|++|+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 67899999999999999999999999999999999999 899999999999 5778899999999999999999997799
Q ss_pred ccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccC
Q 019083 195 EAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFG 274 (346)
Q Consensus 195 DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~ 274 (346)
|+|++|+.||+++|.+|.++|+++||+|+|||+|||++.|...|.+++.+|++|||||++|+|+.++++|||||+ |+|+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred C-CCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCCcEecCCCcccCCC--CCCCcccc
Q 019083 275 D-GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDNRFCCSSI--NRDKVCSM 345 (346)
Q Consensus 275 ~-~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v~~vd~~~fc~~~~--~~~~~c~~ 345 (346)
+ |+ |+||+.|++|+||++||++|+.|++.++.|.+|||++|.||+||+|+|+||+++||+++ ++|++|++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~~ 238 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCAA 238 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccchhhhccceeee
Confidence 9 55 99999999999999999999999999999999999999999999999999999999999 79999986
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=5e-49 Score=406.94 Aligned_cols=219 Identities=21% Similarity=0.364 Sum_probs=194.3
Q ss_pred CceEEEEEEEcCCCCHHHHHHHHHHhccCCcchhhhhcCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCccc
Q 019083 117 KKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEA 196 (346)
Q Consensus 117 ~k~~llI~I~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~Ds 196 (346)
++++|+|+|+|+++|++||++||+|||+... ....++.++|++|.+.+ +.+++.|++|+++|+|||++ ||+|+
T Consensus 383 ~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~----~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~-dF~Ds 455 (636)
T PLN03133 383 KPLDLFIGVFSTANNFKRRMAVRRTWMQYDA----VRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLM-PFVDY 455 (636)
T ss_pred CceEEEEEEeCCcccHHHHHHHHHhhccccc----cCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEE-eeech
Confidence 4689999999999999999999999998642 12345889999999764 46889999999999999999 69999
Q ss_pred CCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecC-cccccCCCcccccCccccCC
Q 019083 197 QEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSG-DVVTEEGRQWYEPEWWKFGD 275 (346)
Q Consensus 197 Y~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g-~vir~~~~Kwyep~~~~f~~ 275 (346)
|.|||+||++++.|+..+++++|++|+|||+|||+++|+++|......+++|+|++..+ .|+|++.+|||+|. +.|+
T Consensus 456 Y~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~--~eyp 533 (636)
T PLN03133 456 YSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISP--EEWP 533 (636)
T ss_pred hhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCH--HHCC
Confidence 99999999999999987799999999999999999999999988776778999999854 89999999999986 3467
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHh--cccCCCCCcChHHHHHHHh-----hCCCcEecCCCcccCCCCCCCccc
Q 019083 276 GKSYFRHAAGSIFVLSRNLAQYININ--SASLKTYAHDDTSVGSWMM-----GVRATYKDDNRFCCSSINRDKVCS 344 (346)
Q Consensus 276 ~~~Yp~y~~G~~YviS~dla~~I~~~--~~~l~~~~~EDV~iG~wl~-----~l~v~~vd~~~fc~~~~~~~~~c~ 344 (346)
++.|||||+|++|+||+|+|++|+.. +..++.|++|||++|+|+. |+.+.+.++.+||+..+..+.+|+
T Consensus 534 ~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~ 609 (636)
T PLN03133 534 EETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVA 609 (636)
T ss_pred CCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEE
Confidence 88999999999999999999999865 3578999999999999985 667889999999988887666654
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=7.6e-47 Score=341.72 Aligned_cols=191 Identities=22% Similarity=0.316 Sum_probs=171.8
Q ss_pred HHHHHHHHHhccCCcchhhhhcCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHh
Q 019083 133 LNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAV 212 (346)
Q Consensus 133 ~rR~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~ 212 (346)
+||++||+||++.... ...++.++||+|.+++.+..+++.|.+|+++|+|||++ ||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~~----~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~-d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF----KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQG-DFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhccccc----CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEee-ecccccchhhHHHHHHHHHHH
Confidence 5899999999998741 24679999999999855667888899999999999998 799999999999999999999
Q ss_pred hc-CCceEEEEecCceeecHHHHHHHhhcc---CCCCceEEEEeecCcccccCCCcccccCccccCCCCCCCCCCCCCce
Q 019083 213 QI-WDAEFYVKVDDNIDLDLEGLIGLLDRS---RGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIF 288 (346)
Q Consensus 213 ~~-~~a~f~lKvDDDvfVn~~~L~~~L~~~---~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~~~Yp~y~~G~~Y 288 (346)
++ ++++|++|+|||+|||+++|.+.|... .....+|.+++..++|++++.+|||+|+. .|+.+.|||||+|++|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~--~y~~~~yP~y~~G~~y 153 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE--EYPDDYYPPYCSGGGY 153 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee--ecccccCCCcCCCCeE
Confidence 99 669999999999999999999999987 33455666677777999999999999973 4677899999999999
Q ss_pred eeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCCcEecCC
Q 019083 289 VLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDN 330 (346)
Q Consensus 289 viS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v~~vd~~ 330 (346)
+||+++|+.|+.++...+.+++|||++|+|+.+++++++|++
T Consensus 154 vls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 154 VLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 999999999999999899999999999999999999999874
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-45 Score=362.11 Aligned_cols=206 Identities=21% Similarity=0.299 Sum_probs=188.9
Q ss_pred ceEEEEEEEcCCCCHHHHHHHHHHhccCCcchhhhhcCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccC
Q 019083 118 KLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQ 197 (346)
Q Consensus 118 k~~llI~I~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY 197 (346)
.++++++|.|++++++||++||+|||+... .....++++|++|.+++.. .+++.+.+|++.|||||+. ||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~-df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQV-DFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEE-ecccch
Confidence 589999999999999999999999999873 1234588899999987654 6688999999999999998 799999
Q ss_pred CCchHHHHHHHHHHhhc-CCceEEEEecCceeecHHHHHHHhhcc-CCCCceEEEEeecC-cccccCCCcccccCccccC
Q 019083 198 EELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRS-RGQESAYIGCMKSG-DVVTEEGRQWYEPEWWKFG 274 (346)
Q Consensus 198 ~nLt~Ktl~~f~wa~~~-~~a~f~lKvDDDvfVn~~~L~~~L~~~-~~~~~vYiG~~~~g-~vir~~~~Kwyep~~~~f~ 274 (346)
.|||+||++++.|+.++ ++++|++|+|||+|||+++|+.+|..+ .+.+.+|+|.+..+ +|+|++.+|||+|+ ..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~--~~y 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPE--SEY 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCH--HHC
Confidence 99999999999999997 899999999999999999999999999 78889999998755 99999999999998 568
Q ss_pred CCCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhC-CCcEecCCC
Q 019083 275 DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV-RATYKDDNR 331 (346)
Q Consensus 275 ~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l-~v~~vd~~~ 331 (346)
+...|||||+|++|+||+++|+.|++++...+.++.|||++|+|+... ++.+++...
T Consensus 246 ~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~ 303 (349)
T KOG2287|consen 246 PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPG 303 (349)
T ss_pred CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcc
Confidence 888999999999999999999999999999999999999999999987 888877664
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.98 E-value=3.1e-32 Score=265.55 Aligned_cols=189 Identities=20% Similarity=0.248 Sum_probs=156.3
Q ss_pred CCceEEEEEEEcCCCC--HHHHHHHHHHhccCCc-chhhhhcCC-cEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcC
Q 019083 116 GKKLLAVIGVYTGFGS--HLNRNVYRGSWMPKGD-ALKKLEERG-VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILE 191 (346)
Q Consensus 116 ~~k~~llI~I~S~~~~--~~rR~aIR~TW~~~~~-~l~~l~~~g-i~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~ 191 (346)
.+..++++||.|..++ +.||++.|+||+.... +.+..+..| +.++|++|..++.+-+++.++.+|+++|+|||++|
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 4569999999999998 8999999999998765 222222344 77899999998887789999999999999999995
Q ss_pred CC------------------cccCCCchHHHHHHHHHHhhc-CCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEe
Q 019083 192 GH------------------EEAQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCM 252 (346)
Q Consensus 192 d~------------------~DsY~nLt~Ktl~~f~wa~~~-~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~ 252 (346)
| .|++.++|+||+++|+|+... |+++|++|+|||+|||++.+++.|+.. +...+|+|.+
T Consensus 157 -f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~v 234 (382)
T PTZ00210 157 -TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGRY 234 (382)
T ss_pred -cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEee
Confidence 9 777888999999999999999 799999999999999999999999664 5667999987
Q ss_pred ecC-cccccCCCcccccCccccCCCCCCCCCCCCCceeeCHHHHHHHHHhccc--C---------------CCCCcChHH
Q 019083 253 KSG-DVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYININSAS--L---------------KTYAHDDTS 314 (346)
Q Consensus 253 ~~g-~vir~~~~Kwyep~~~~f~~~~~Yp~y~~G~~YviS~dla~~I~~~~~~--l---------------~~~~~EDV~ 314 (346)
... .|.+ +.|||||+|++|+||+|+|+.|....+. + -.+.+||++
T Consensus 235 ~~~~~p~R-----------------d~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiM 297 (382)
T PTZ00210 235 NYYNRIWR-----------------RNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVM 297 (382)
T ss_pred CCCCcccc-----------------CCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHH
Confidence 521 1211 2379999999999999999999765432 2 246899999
Q ss_pred HHHHHh-hCC
Q 019083 315 VGSWMM-GVR 323 (346)
Q Consensus 315 iG~wl~-~l~ 323 (346)
+|.|+. ++.
T Consensus 298 vG~vLr~~~k 307 (382)
T PTZ00210 298 VGMILREKVV 307 (382)
T ss_pred HHHHHHHhcC
Confidence 999994 443
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.80 E-value=1.9e-20 Score=151.90 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=56.5
Q ss_pred CchhHHHHHHHHHHHHHHHhccccccccchHHHH-------Hhhhhc-ccCCCcc----------cccccccccccchhh
Q 019083 23 TSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLS-------NFLKKS-MEQRPKV----------LTVEDKLMLLGCKDL 84 (346)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~ 84 (346)
|+||+++|||+|||+|+|||||||..||..+... +++... .+++++. .+|.++++ +||+|
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~--aIq~L 78 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHE--AIQSL 78 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHHHHHHHH--HHHHH
Confidence 6899999999999999999999998887655432 122222 2222222 24555554 56899
Q ss_pred hhhHHHhhhhhhhhhhc
Q 019083 85 ERRIVEAEMDLTLAKSQ 101 (346)
Q Consensus 85 ~~~~~~le~~l~~~~~~ 101 (346)
||+|++||||||+||++
T Consensus 79 dKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 79 DKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999974
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.76 E-value=3.3e-18 Score=161.60 Aligned_cols=193 Identities=18% Similarity=0.209 Sum_probs=100.0
Q ss_pred EEEEEEEcCCCCHHHH-HHHHHHhccCCcchhhhhcCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCC
Q 019083 120 LAVIGVYTGFGSHLNR-NVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQE 198 (346)
Q Consensus 120 ~llI~I~S~~~~~~rR-~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~ 198 (346)
.++|+|+|++++.+.| .+|++||++... .. .|+.... .+..+..+ ...+++ .++...++.
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~--------~~--~~ifsd~------~d~~l~~~--~~~~l~-~~~~~~~~~ 67 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCN--------KQ--TFIFSDA------EDPSLPTV--TGVHLV-NPNCDAGHC 67 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSG--------GG--EEEEESS--------HHHHHH--HGGGEE-E--------
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcC--------Cc--eEEecCc------cccccccc--cccccc-cCCCcchhh
Confidence 5788999999876555 899999999874 22 3432221 13345444 223344 445555554
Q ss_pred CchHHHHHHHHHHhhc-CCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCC-CcccccCccccCCC
Q 019083 199 ELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEG-RQWYEPEWWKFGDG 276 (346)
Q Consensus 199 nLt~Ktl~~f~wa~~~-~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~-~Kwyep~~~~f~~~ 276 (346)
...++.++.+.+.... ++++|++++|||+||++++|.++|..+.+..++|+|+.....+..... ..... ..
T Consensus 68 ~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~-------~~ 140 (252)
T PF02434_consen 68 RKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNK-------SK 140 (252)
T ss_dssp -----HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccc-------cC
Confidence 4455555544443333 688999999999999999999999999999999999875333321100 00000 01
Q ss_pred CCCCCCCC-CCceeeCHHHHHHHHH--hc-ccCCCC----CcChHHHHHHHhh-CCCcEecCCCcccCCCC
Q 019083 277 KSYFRHAA-GSIFVLSRNLAQYINI--NS-ASLKTY----AHDDTSVGSWMMG-VRATYKDDNRFCCSSIN 338 (346)
Q Consensus 277 ~~Yp~y~~-G~~YviS~dla~~I~~--~~-~~l~~~----~~EDV~iG~wl~~-l~v~~vd~~~fc~~~~~ 338 (346)
..-+.|++ |+||+||+.+++.|.. .. ...... ..||+.+|.|+.. |+|...+.+.|+...++
T Consensus 141 ~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~ 211 (252)
T PF02434_consen 141 DSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLEN 211 (252)
T ss_dssp -----EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-
T ss_pred cCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcc
Confidence 12234565 5799999999999942 22 222222 3899999999998 99999999999887764
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.62 E-value=3e-15 Score=148.21 Aligned_cols=170 Identities=18% Similarity=0.280 Sum_probs=128.9
Q ss_pred CCCceEEEEEEEcCCCCHHHH-HHHHHHhccCCcchhhhhcCCcEEEEEe---cccCCCCchhhHHHHHHhhhCCCeEEc
Q 019083 115 SGKKLLAVIGVYTGFGSHLNR-NVYRGSWMPKGDALKKLEERGVVIRFVI---GRSANRGDSLDRKIDAENRETKDFLIL 190 (346)
Q Consensus 115 ~~~k~~llI~I~S~~~~~~rR-~aIR~TW~~~~~~l~~l~~~gi~vrFVi---G~s~~~~~~~d~~I~~E~~~~~DIl~l 190 (346)
..++..+++.|.|++.+..-| +.+-+||++.+. +..|+- .+. ...+. .|.+
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~----------~~~f~s~~~s~~--------------~~~f~-~v~~ 141 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD----------KGIFFSPTLSKD--------------DSRFP-TVYY 141 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccC----------cceecCccCCCC--------------CCcCc-eeec
Confidence 345689999999999887766 699999999884 223443 221 11222 2346
Q ss_pred CCCcccCCCchHHHHHHHHHHhhc--CCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCccccc
Q 019083 191 EGHEEAQEELPKKAKFFFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEP 268 (346)
Q Consensus 191 ~d~~DsY~nLt~Ktl~~f~wa~~~--~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep 268 (346)
+..|+|+++..||..+|+++.++ .+++|++|+|||+|+.++||..+|..+.+..++|+|+... + |
T Consensus 142 -~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~-~---------~-- 208 (364)
T KOG2246|consen 142 -NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK-S---------Y-- 208 (364)
T ss_pred -cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc-c---------c--
Confidence 58999999999999999999966 8999999999999999999999999999999999998741 1 1
Q ss_pred CccccCCCCCCCCCCCCCceeeCHHHHHHHH----HhcccCC-CCC--cChHHHHHHHhhCCCcEecCC
Q 019083 269 EWWKFGDGKSYFRHAAGSIFVLSRNLAQYIN----INSASLK-TYA--HDDTSVGSWMMGVRATYKDDN 330 (346)
Q Consensus 269 ~~~~f~~~~~Yp~y~~G~~YviS~dla~~I~----~~~~~l~-~~~--~EDV~iG~wl~~l~v~~vd~~ 330 (346)
..+.|-. .|++|++|+.+...++ .+...++ .+. .||.-||.|+..+||...|++
T Consensus 209 ------~~~~y~~--g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 209 ------FQNGYSS--GGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDER 269 (364)
T ss_pred ------ccccccc--CCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCch
Confidence 1122221 6789999988877654 3443333 343 999999999999999888874
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.16 E-value=5e-10 Score=114.14 Aligned_cols=179 Identities=16% Similarity=0.240 Sum_probs=112.6
Q ss_pred ceEEEEEEEcCCCCH-HHHHHHHHHhccCCcchhhhhcCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCccc
Q 019083 118 KLLAVIGVYTGFGSH-LNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEA 196 (346)
Q Consensus 118 k~~llI~I~S~~~~~-~rR~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~Ds 196 (346)
--.+++||.+..+.. +|+..|+.+|.+... +| .+|+.....+. ..+..+- -|. +. .|+
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-------rg--~v~ld~~~~~~--~~~~~~P-------~i~-is--~d~ 179 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQM-------RG--HVWLEEQVSPE--EGDDSLP-------PIM-VS--EDT 179 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCcccc-------ee--EEEecccCCCC--CCcCCCC-------CEE-eC--CCc
Confidence 357889999988876 566899999998541 23 23433322110 0000110 111 10 111
Q ss_pred ----CCC---chHHHHH--HHHHHhhc--CCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcc
Q 019083 197 ----QEE---LPKKAKF--FFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQW 265 (346)
Q Consensus 197 ----Y~n---Lt~Ktl~--~f~wa~~~--~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kw 265 (346)
|.| ....... +...+... ++++||+++|||+|+.+++|++.|..+.+..+.|+|......
T Consensus 180 s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~--------- 250 (537)
T PLN03153 180 SRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH--------- 250 (537)
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc---------
Confidence 222 2222111 23333333 899999999999999999999999999999999999763110
Q ss_pred cccCccccCCCCCCC--CCC-CCCceeeCHHHHHHHHHhcccC----CCCCcChHHHHHHHhhCCCcEecCCCcccC
Q 019083 266 YEPEWWKFGDGKSYF--RHA-AGSIFVLSRNLAQYININSASL----KTYAHDDTSVGSWMMGVRATYKDDNRFCCS 335 (346)
Q Consensus 266 yep~~~~f~~~~~Yp--~y~-~G~~YviS~dla~~I~~~~~~l----~~~~~EDV~iG~wl~~l~v~~vd~~~fc~~ 335 (346)
..+.++ -|+ +|+||+||+.+++.|......+ +...-+|.-+|.|+..++|...++.+|..-
T Consensus 251 ---------~qn~~f~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 251 ---------SANSYFSHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred ---------ccccccccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 001111 133 6789999999999887653222 222458889999999999998888887643
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0085 Score=61.67 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=71.3
Q ss_pred hHHHH-HHHHHHhhc--CCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccCCCC
Q 019083 201 PKKAK-FFFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGK 277 (346)
Q Consensus 201 t~Ktl-~~f~wa~~~--~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~~ 277 (346)
..|+. +.+.+..++ .++||++-+-|++|||...|++++....-..++|+|.-. . ++.
T Consensus 79 ~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~------------------~--~gs 138 (681)
T KOG3708|consen 79 GQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA------------------E--DGS 138 (681)
T ss_pred ccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh------------------h--Ccc
Confidence 33443 455666665 689999999999999999999999988778889998211 1 111
Q ss_pred CCCCCCC-CCceeeCHHHHHHHHHhcccCCC---CCcChHHHHHHHh
Q 019083 278 SYFRHAA-GSIFVLSRNLAQYININSASLKT---YAHDDTSVGSWMM 320 (346)
Q Consensus 278 ~Yp~y~~-G~~YviS~dla~~I~~~~~~l~~---~~~EDV~iG~wl~ 320 (346)
.- |. |.||++|+.++..+-.|..-+.. -.-.|+.+|.|+.
T Consensus 139 ~r---C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~ 182 (681)
T KOG3708|consen 139 GR---CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQ 182 (681)
T ss_pred Cc---cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHH
Confidence 11 65 47999999999998766443332 3567899999986
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.47 E-value=1.1 Score=40.01 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=57.0
Q ss_pred HHHHHhhcCCceEEEEecCceeecHHHHHHHhhcc-CCCCceEEEEeecCc--ccccCCCcccccCcc-ccCC-CCCC-C
Q 019083 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS-RGQESAYIGCMKSGD--VVTEEGRQWYEPEWW-KFGD-GKSY-F 280 (346)
Q Consensus 207 ~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~-~~~~~vYiG~~~~g~--vir~~~~Kwyep~~~-~f~~-~~~Y-p 280 (346)
.+.++.+.-+.+|++.+|||+.+.++.|..++... .+.-....|.....+ ..-.....++.-.+. .+.. ...+ .
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRALGV 156 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B----
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhcccce
Confidence 44666666679999999999999999988887776 333333334332111 000000111000000 0111 1111 1
Q ss_pred CCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCCc
Q 019083 281 RHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 325 (346)
Q Consensus 281 ~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v~ 325 (346)
.++.|++.++.++++..+-.-.. ....||..++..+...+.+
T Consensus 157 ~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 157 AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 34679999999999998853222 3445999999888765543
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.39 E-value=0.93 Score=44.99 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=83.5
Q ss_pred CcEEEEEecccCCCCchhhHHHHHHhhhCCC--eEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHH
Q 019083 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKD--FLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 233 (346)
Q Consensus 156 gi~vrFViG~s~~~~~~~d~~I~~E~~~~~D--Il~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~ 233 (346)
.+.|.|+...+.+ ...+.+++=.++|.+ +..+.+ .+ -.....|.-...+ +.+.-+.+|++..|+|+.+.++.
T Consensus 70 ~~EIivvdd~s~D---~t~~iv~~~~~~~p~~~i~~v~~-~~-~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~ 143 (373)
T TIGR03472 70 GFQMLFGVQDPDD---PALAVVRRLRADFPDADIDLVID-AR-RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDY 143 (373)
T ss_pred CeEEEEEeCCCCC---cHHHHHHHHHHhCCCCceEEEEC-CC-CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhH
Confidence 3677777665432 212233332345655 322211 11 1223456655544 34456789999999999999999
Q ss_pred HHHHhhccCCCCce-EEEEeecCcccccCCCcccc----c--CccccCCC------CCCCCCCCCCceeeCHHHHHHHHH
Q 019083 234 LIGLLDRSRGQESA-YIGCMKSGDVVTEEGRQWYE----P--EWWKFGDG------KSYFRHAAGSIFVLSRNLAQYINI 300 (346)
Q Consensus 234 L~~~L~~~~~~~~v-YiG~~~~g~vir~~~~Kwye----p--~~~~f~~~------~~Yp~y~~G~~YviS~dla~~I~~ 300 (346)
|.+.+.... .+.+ .+++...+. +...|.. . .+ .+.++ ..-+.+|.|+++++.+++.+.+--
T Consensus 144 L~~lv~~~~-~~~v~~V~~~~~~~----~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iGG 217 (373)
T TIGR03472 144 LRQVVAPLA-DPDVGLVTCLYRGR----PVPGFWSRLGAMGINH-NFLPSVMVARALGRARFCFGATMALRRATLEAIGG 217 (373)
T ss_pred HHHHHHHhc-CCCcceEeccccCC----CCCCHHHHHHHHHhhh-hhhHHHHHHHhccCCccccChhhheeHHHHHHcCC
Confidence 888877653 2222 222221111 1111110 0 00 01110 011346889999999999998842
Q ss_pred hcccCCCCCcChHHHHHHHhhCCCc
Q 019083 301 NSASLKTYAHDDTSVGSWMMGVRAT 325 (346)
Q Consensus 301 ~~~~l~~~~~EDV~iG~wl~~l~v~ 325 (346)
-... ...-.||+.+|.-+...|.+
T Consensus 218 f~~~-~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 218 LAAL-AHHLADDYWLGELVRALGLR 241 (373)
T ss_pred hHHh-cccchHHHHHHHHHHHcCCe
Confidence 2221 22235999999888765543
No 14
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=94.36 E-value=0.052 Score=48.55 Aligned_cols=129 Identities=15% Similarity=0.078 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccCCC---
Q 019083 200 LPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDG--- 276 (346)
Q Consensus 200 Lt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~--- 276 (346)
...|+-.........-..++++-.|+|+.|+++.|.+++.......--.+.++-.+.+... .....+..+..+..+
T Consensus 15 ~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 93 (175)
T PF13506_consen 15 CNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARG-FWSRLEAAFFNFLPGVLQ 93 (175)
T ss_pred CChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcC-HHHHHHHHHHhHHHHHHH
Confidence 3567766665544435789999999999999999999888764322112222211111110 000011111000000
Q ss_pred -CCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCCcEecCC
Q 019083 277 -KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDN 330 (346)
Q Consensus 277 -~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v~~vd~~ 330 (346)
-.-.++|.|+.+++.++++..+--- ..+..+-.||..+|..+...+.+.+-.+
T Consensus 94 a~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 94 ALGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred HhcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 1246789999999999999877321 2233466999999999987777655444
No 15
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=93.71 E-value=1 Score=40.23 Aligned_cols=94 Identities=15% Similarity=0.082 Sum_probs=51.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhccCCcchhhhhcCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCC----CcccCC
Q 019083 123 IGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEG----HEEAQE 198 (346)
Q Consensus 123 I~I~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d----~~DsY~ 198 (346)
|.|.|-+.+.+||+.+.+..... |+.+.|+=+-.+.. ++. .+....++.-..... ..-+--
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gEi 68 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGEI 68 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcceE
Confidence 34566788899999998776643 46666776654321 111 111112221111100 001111
Q ss_pred CchHHHHHHHHHHhhcCCceEEEEecCceeecHH
Q 019083 199 ELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLE 232 (346)
Q Consensus 199 nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~ 232 (346)
.-.+--+..++.+++. +.++.+-.-||+.++.+
T Consensus 69 GC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 69 GCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred eehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 1144455666766664 67899999999999865
No 16
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.63 E-value=2.7 Score=41.90 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=80.8
Q ss_pred cEEEEEecccCCCCchhhHHHHHHhhhCC---CeEEcCCCcccCCCchHHHH---HHHHHHhhc-CCceEEEEecCceee
Q 019083 157 VVIRFVIGRSANRGDSLDRKIDAENRETK---DFLILEGHEEAQEELPKKAK---FFFSTAVQI-WDAEFYVKVDDNIDL 229 (346)
Q Consensus 157 i~vrFViG~s~~~~~~~d~~I~~E~~~~~---DIl~l~d~~DsY~nLt~Ktl---~~f~wa~~~-~~a~f~lKvDDDvfV 229 (346)
..+.+|-..|.+.. .+.+++-.+++. .+.++. ..+...+-..|.. .+++.+.+. ++.+|++.+|+|+.+
T Consensus 71 ~eIIVVDd~StD~T---~~i~~~~~~~~~~~~~i~vi~-~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 71 LHVILVDDHSTDGT---ADIARAAARAYGRGDRLTVVS-GQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred eEEEEEeCCCCCcH---HHHHHHHHHhcCCCCcEEEec-CCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 56777766654321 222222222332 344442 2222223345643 355555444 448999999999999
Q ss_pred cHHHHHHHhhccCCCC-ceEEEEeecCcccccCCCcc---ccc-----------CccccCCCCCCCCCCCCCceeeCHHH
Q 019083 230 DLEGLIGLLDRSRGQE-SAYIGCMKSGDVVTEEGRQW---YEP-----------EWWKFGDGKSYFRHAAGSIFVLSRNL 294 (346)
Q Consensus 230 n~~~L~~~L~~~~~~~-~vYiG~~~~g~vir~~~~Kw---yep-----------~~~~f~~~~~Yp~y~~G~~YviS~dl 294 (346)
.++.|.+.+......+ .+..|... ... .+-| ..| ..| ..+.......+.|++.++++++
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~lirr~~ 220 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVR----LRC-ESFWEKLLIPAFVFFFQKLYPFRW-VNDPRRRTAAAAGGCILIRREA 220 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEeccc----ccC-CCHHHHHHHHHHHHHHHHhcchhh-hcCCCccceeecceEEEEEHHH
Confidence 9988888877653322 22222221 000 1100 001 000 0111122345689999999999
Q ss_pred HHHHHHhcccCCCCCcChHHHHHHHhhCC
Q 019083 295 AQYININSASLKTYAHDDTSVGSWMMGVR 323 (346)
Q Consensus 295 a~~I~~~~~~l~~~~~EDV~iG~wl~~l~ 323 (346)
.+.+---...... ..||+.++.-+...+
T Consensus 221 ~~~vGGf~~~~~~-~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 221 LERIGGIAAIRGA-LIDDCTLAAAVKRSG 248 (384)
T ss_pred HHHcCCHHHHhhC-cccHHHHHHHHHHcC
Confidence 9988322221122 479999998777544
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=92.17 E-value=3.8 Score=36.13 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=78.1
Q ss_pred CcEEEEEecccCCCCchhhHHHHHHhhhCC--CeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHH
Q 019083 156 GVVIRFVIGRSANRGDSLDRKIDAENRETK--DFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 233 (346)
Q Consensus 156 gi~vrFViG~s~~~~~~~d~~I~~E~~~~~--DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~ 233 (346)
.+.+++|...+.+ ...+.+++-.+.|. ++.++..... .....|... +..+.+....+|++..|+|+.+.++.
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~ 103 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEK--VGINPKVNN-LIKGYEEARYDILVISDSDISVPPDY 103 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCc--CCCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhH
Confidence 3677777766643 22334444444554 3322211111 112344433 34455556789999999999998888
Q ss_pred HHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccCCCCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChH
Q 019083 234 LIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDT 313 (346)
Q Consensus 234 L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV 313 (346)
|...+.... .+.+ |++. + .++.|++.++.+++.+.+-.... ...+..||.
T Consensus 104 l~~l~~~~~-~~~~--~~v~-~-------------------------~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~ 153 (196)
T cd02520 104 LRRMVAPLM-DPGV--GLVT-C-------------------------LCAFGKSMALRREVLDAIGGFEA-FADYLAEDY 153 (196)
T ss_pred HHHHHHHhh-CCCC--CeEE-e-------------------------ecccCceeeeEHHHHHhccChHH-HhHHHHHHH
Confidence 887776532 2221 2221 0 04578999999999988743221 222347999
Q ss_pred HHHHHHhhCCCc
Q 019083 314 SVGSWMMGVRAT 325 (346)
Q Consensus 314 ~iG~wl~~l~v~ 325 (346)
.++.-+...|.+
T Consensus 154 ~l~~rl~~~G~~ 165 (196)
T cd02520 154 FLGKLIWRLGYR 165 (196)
T ss_pred HHHHHHHHcCCe
Confidence 999887655544
No 18
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=91.45 E-value=10 Score=33.94 Aligned_cols=122 Identities=9% Similarity=0.014 Sum_probs=65.0
Q ss_pred HHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCC-ceEEEEeecC--cccccCCCcccccC-------ccccCCC
Q 019083 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQE-SAYIGCMKSG--DVVTEEGRQWYEPE-------WWKFGDG 276 (346)
Q Consensus 207 ~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~-~vYiG~~~~g--~vir~~~~Kwyep~-------~~~f~~~ 276 (346)
.+..+.+.-..+|++.+|||..+.++.|...+......+ .+..|+.... .+... ...+.... +.....
T Consensus 72 a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 149 (249)
T cd02525 72 GLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQK-AIAVAQSSPLGSGGSAYRGGA- 149 (249)
T ss_pred HHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHH-HHHHHhhchhccCCccccccc-
Confidence 455555555789999999999999888888886553333 3333443211 11100 00000000 000000
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCC--cEecCCCc
Q 019083 277 KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA--TYKDDNRF 332 (346)
Q Consensus 277 ~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v--~~vd~~~f 332 (346)
..+-.++.|++.++++++...+-..... ....||..++.-+...+. .++.+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~eD~~l~~r~~~~G~~~~~~~~~~~ 205 (249)
T cd02525 150 VKIGYVDTVHHGAYRREVFEKVGGFDES--LVRNEDAELNYRLRKAGYKIWLSPDIRV 205 (249)
T ss_pred cccccccccccceEEHHHHHHhCCCCcc--cCccchhHHHHHHHHcCcEEEEcCCeEE
Confidence 0001145788889999998877432222 224699988866655543 34444333
No 19
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.68 E-value=16 Score=34.69 Aligned_cols=124 Identities=14% Similarity=0.223 Sum_probs=67.8
Q ss_pred HHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEE-EEeec--CcccccCC--------Ccccc-cCcccc--
Q 019083 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYI-GCMKS--GDVVTEEG--------RQWYE-PEWWKF-- 273 (346)
Q Consensus 208 f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYi-G~~~~--g~vir~~~--------~Kwye-p~~~~f-- 273 (346)
...+.+.-..+|++..|+|+.+..+-|..++......+...+ |.+.. +....... -.|.. ..|...
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 333444446799999999999988887777766533333222 22210 10000000 00100 000000
Q ss_pred -------CCCCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHH--HHHhhCCCcEecCCC
Q 019083 274 -------GDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVG--SWMMGVRATYKDDNR 331 (346)
Q Consensus 274 -------~~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG--~wl~~l~v~~vd~~~ 331 (346)
......-++++|+++++++++...+-.-...+..+..||+-+. .|..|..+..+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~ 221 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSR 221 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccE
Confidence 0012234567899999999999998654455556668998765 455666554444433
No 20
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.35 E-value=11 Score=33.31 Aligned_cols=120 Identities=11% Similarity=0.026 Sum_probs=64.6
Q ss_pred HHHHhhcCCceEEEEecCceeecHHHHHHHhhccC-CCCceEEEEeecCcccccCCCcccccCcc------ccCCCCCCC
Q 019083 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKSGDVVTEEGRQWYEPEWW------KFGDGKSYF 280 (346)
Q Consensus 208 f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~-~~~~vYiG~~~~g~vir~~~~Kwyep~~~------~f~~~~~Yp 280 (346)
+.++.+....+|++.+|+|..+.++.|..++.... .....+.|.....+.-. ....+...++. ....+..++
T Consensus 74 ~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (229)
T cd04192 74 LTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKS-LLAKFQRLDWLSLLGLIAGSFGLGKP 152 (229)
T ss_pred HHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCcc-HHHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 45565666789999999999999888888887543 23334444332110000 00000000000 000122355
Q ss_pred CCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHH--HHhhC-CCcEecC
Q 019083 281 RHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGS--WMMGV-RATYKDD 329 (346)
Q Consensus 281 ~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~--wl~~l-~v~~vd~ 329 (346)
..+.|+++++++++...+---.... ....||..++. ...|. .+..+.+
T Consensus 153 ~~~~g~~~~~rr~~~~~~ggf~~~~-~~~~eD~~~~~~~~~~g~~~~~~~~~ 203 (229)
T cd04192 153 FMCNGANMAYRKEAFFEVGGFEGND-HIASGDDELLLAKVASKYPKVAYLKN 203 (229)
T ss_pred cccccceEEEEHHHHHHhcCCcccc-ccccCCHHHHHHHHHhCCCCEEEeeC
Confidence 6678999999999999885332222 23456665554 33344 4444433
No 21
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.32 E-value=14 Score=32.24 Aligned_cols=92 Identities=16% Similarity=0.051 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccC-CCCceEEEEeecCcccccCCCcccccCccccCCCCCCCCC
Q 019083 204 AKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRH 282 (346)
Q Consensus 204 tl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~-~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~~~Yp~y 282 (346)
.-.+++++. ..+.+|++..|||..+..+.|...+.... +.-.++.|... . .++
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------------~------~~~------ 121 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL-------------D------PDG------ 121 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE-------------c------CCC------
Confidence 344566665 45789999999999999887777666543 22222222111 0 001
Q ss_pred CCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCC
Q 019083 283 AAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (346)
Q Consensus 283 ~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~ 323 (346)
.+++.++.+++...+-....... ...||+.++.-+...+
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~~-~~~eD~~~~~r~~~~G 160 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEFF-IWGDDTEYTLRASKAG 160 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhhh-ccchHHHHHHHHHHcC
Confidence 34567899999887743222222 3469998887665444
No 22
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=88.21 E-value=1.3 Score=38.80 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=67.0
Q ss_pred EEEEecCceeecHHHHHHHhhccCCCCce--EEEEeecCcccccCCCcccccCcc----c---cCCCCCCCCCCCCCcee
Q 019083 219 FYVKVDDNIDLDLEGLIGLLDRSRGQESA--YIGCMKSGDVVTEEGRQWYEPEWW----K---FGDGKSYFRHAAGSIFV 289 (346)
Q Consensus 219 f~lKvDDDvfVn~~~L~~~L~~~~~~~~v--YiG~~~~g~vir~~~~Kwyep~~~----~---f~~~~~Yp~y~~G~~Yv 289 (346)
|++-+|+|+.+..+-|.+.+.... .+.+ .-|.... ......-.++...++. + .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIF-RNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEe-cCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999999888877665 3322 2222211 0000001112222210 0 00112356678999999
Q ss_pred eCHHHHHHHHHhcccCCCCCcChHHHHHHHh--hCCCcEecCCCcccCCC
Q 019083 290 LSRNLAQYININSASLKTYAHDDTSVGSWMM--GVRATYKDDNRFCCSSI 337 (346)
Q Consensus 290 iS~dla~~I~~~~~~l~~~~~EDV~iG~wl~--~l~v~~vd~~~fc~~~~ 337 (346)
+++++.+.+.--. -.....||..++.=+. |..+..+++...-+..|
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p 126 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAP 126 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCC
Confidence 9999999884222 2345569999987554 55566777775555544
No 23
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=88.04 E-value=6.4 Score=32.24 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=47.1
Q ss_pred HHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCC-CCceEEEEee-cCccc--ccCCC---ccccc-CccccCCCCC
Q 019083 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG-QESAYIGCMK-SGDVV--TEEGR---QWYEP-EWWKFGDGKS 278 (346)
Q Consensus 207 ~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~-~~~vYiG~~~-~g~vi--r~~~~---Kwyep-~~~~f~~~~~ 278 (346)
.+..+.++-..+|++.+|||.++..+.|..++..... ...+.+|... ..... ..... .+... ..........
T Consensus 69 ~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (169)
T PF00535_consen 69 ARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFW 148 (169)
T ss_dssp HHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHST
T ss_pred cccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcC
Confidence 3344444445669999999999998877666665533 3445555443 11111 11110 01111 0000011123
Q ss_pred CCCCCCCCceeeCHHHHHHH
Q 019083 279 YFRHAAGSIFVLSRNLAQYI 298 (346)
Q Consensus 279 Yp~y~~G~~YviS~dla~~I 298 (346)
-.+++.|++.++++++.+.+
T Consensus 149 ~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 149 KISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp TSSEESSSCEEEEEHHHHHC
T ss_pred CcccccccEEEEEHHHHHhh
Confidence 34567889999999887653
No 24
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=87.35 E-value=16 Score=32.70 Aligned_cols=128 Identities=12% Similarity=-0.050 Sum_probs=64.5
Q ss_pred HHHHHHHHhhcCCceEEEEecCceeecHHHHHHHh---hccCCCCce-EEEEeecCcccccCCCcccccCcc-----ccC
Q 019083 204 AKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLL---DRSRGQESA-YIGCMKSGDVVTEEGRQWYEPEWW-----KFG 274 (346)
Q Consensus 204 tl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L---~~~~~~~~v-YiG~~~~g~vir~~~~Kwyep~~~-----~f~ 274 (346)
.-.+++.+... +++|++..|||+.+.++.|..++ ......+.+ .+|+.............+....++ ...
T Consensus 64 ~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (237)
T cd02526 64 LNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGE 142 (237)
T ss_pred hhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceeccccc
Confidence 33455555442 68999999999999988888885 322223322 223322110000000011111100 000
Q ss_pred CCCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCC--CcEecCCCcc
Q 019083 275 DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR--ATYKDDNRFC 333 (346)
Q Consensus 275 ~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~--v~~vd~~~fc 333 (346)
....-..++.|++.++++++...+-.-...+ ....||+.++.-+...+ +..+.+....
T Consensus 143 ~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~ 202 (237)
T cd02526 143 EGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLK 202 (237)
T ss_pred CCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEE
Confidence 0011123456778899999988874322222 13468998887775444 4444444333
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=86.75 E-value=16 Score=33.16 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=58.5
Q ss_pred HHHHhhcCCceEEEEecCceeecHHHHHHHhhccC-CCCceEEEEeec-CcccccCCCc--ccccCccc-cCCCCCCCCC
Q 019083 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKS-GDVVTEEGRQ--WYEPEWWK-FGDGKSYFRH 282 (346)
Q Consensus 208 f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~-~~~~vYiG~~~~-g~vir~~~~K--wyep~~~~-f~~~~~Yp~y 282 (346)
+..+.+....+|++.+|+|+.+..+.|.+.+.... +...+..|.... .+........ |.....+. +......+..
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTVG 180 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCeee
Confidence 34444555569999999999999877777776653 232333333321 1100000001 10000000 0000122344
Q ss_pred CCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCC
Q 019083 283 AAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA 324 (346)
Q Consensus 283 ~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v 324 (346)
+.|+++.+.+++.. ........||..++.-+...|.
T Consensus 181 ~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~ 216 (251)
T cd06439 181 ANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGY 216 (251)
T ss_pred ecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCC
Confidence 67888888887766 2223345799999887766554
No 26
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=86.47 E-value=6.4 Score=32.15 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=49.2
Q ss_pred HHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCc--eEEEEeecCc----ccccCC-CcccccCccc-cC-CCC
Q 019083 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES--AYIGCMKSGD----VVTEEG-RQWYEPEWWK-FG-DGK 277 (346)
Q Consensus 207 ~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~--vYiG~~~~g~----vir~~~-~Kwyep~~~~-f~-~~~ 277 (346)
...++.+..+.+|++.+|+|..+..+.|..++......+. +..|...... ...... .++....... .+ ...
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSAL 148 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhee
Confidence 3444555558899999999999998888777455433332 2333332111 010000 0011100000 00 012
Q ss_pred CCCCCCCCCceeeCHHHHHHHH
Q 019083 278 SYFRHAAGSIFVLSRNLAQYIN 299 (346)
Q Consensus 278 ~Yp~y~~G~~YviS~dla~~I~ 299 (346)
.+..++.|.++++++++...+-
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 149 GGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred cceeecCchHHHHHHHHHHHhC
Confidence 3446678999999999988764
No 27
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.06 E-value=18 Score=29.81 Aligned_cols=83 Identities=13% Similarity=0.231 Sum_probs=53.2
Q ss_pred CCceEEEEecCceeecHHHHHHHhhccCCCCce-EEEEeecCcccccCCCcccccCccccCCCCCCCCCCCCCceeeCHH
Q 019083 215 WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESA-YIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRN 293 (346)
Q Consensus 215 ~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~v-YiG~~~~g~vir~~~~Kwyep~~~~f~~~~~Yp~y~~G~~YviS~d 293 (346)
-+.+|++..|||..+..+.+...+......+.+ .+++. +.|++.+++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~ 122 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------VSGAFLLVRRE 122 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------CceeeEeeeHH
Confidence 378999999999999998888877754322221 11111 57899999999
Q ss_pred HHHHHHHhcccCCCCCcChHHHHHHHh--hCCCcEec
Q 019083 294 LAQYININSASLKTYAHDDTSVGSWMM--GVRATYKD 328 (346)
Q Consensus 294 la~~I~~~~~~l~~~~~EDV~iG~wl~--~l~v~~vd 328 (346)
+++.+-.-...... ..||..+..-+. |..+....
T Consensus 123 ~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 123 VFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred HHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEcc
Confidence 88876422222112 568888776554 44444433
No 28
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.33 E-value=14 Score=32.20 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=62.5
Q ss_pred hhcCCceEEEEecCceeecHHHHHHHhhc-cC-CCCceEEEEee-c---CcccccCCCcccccCcc---ccCCCCCCCCC
Q 019083 212 VQIWDAEFYVKVDDNIDLDLEGLIGLLDR-SR-GQESAYIGCMK-S---GDVVTEEGRQWYEPEWW---KFGDGKSYFRH 282 (346)
Q Consensus 212 ~~~~~a~f~lKvDDDvfVn~~~L~~~L~~-~~-~~~~vYiG~~~-~---g~vir~~~~Kwyep~~~---~f~~~~~Yp~y 282 (346)
......+|++..|+|..+.++.|...+.. .. +...++.|... . +.... ..+...... ..........+
T Consensus 75 ~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 151 (214)
T cd04196 75 LQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIG---ESFFEYQKIKPGTSFNNLLFQNV 151 (214)
T ss_pred HHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcc---cccccccccCCccCHHHHHHhCc
Confidence 44467899999999999998888888876 22 33334444322 1 11111 011100000 00000112345
Q ss_pred CCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhC-CCcEecCC
Q 019083 283 AAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV-RATYKDDN 330 (346)
Q Consensus 283 ~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l-~v~~vd~~ 330 (346)
+.|+++++.++++..+....... ...||..+...+... .+..+++.
T Consensus 152 ~~~~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~ 198 (214)
T cd04196 152 VTGCTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDEP 198 (214)
T ss_pred cCCceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcchh
Confidence 67899999999998875433322 467888776555443 34455544
No 29
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=84.28 E-value=12 Score=31.33 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=65.1
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCcchhhhhcCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHH
Q 019083 124 GVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKK 203 (346)
Q Consensus 124 ~I~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~K 203 (346)
.|.+-+.+.+||+.+++.... .|+.+.|+-|-.+...+ ...+......+.....-....-+..--.+-
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~----------~~~~~~~~~Avd~~~~~--~~~~~~~~~~~~~~~~~~~l~~gEiGC~lS 70 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAA----------LGLDFEFFDAVDGKDLS--EEELAALYDALFLPRYGRPLTPGEIGCFLS 70 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHH----------cCCCeEEEeccccccCC--HHHHHHHhHHHhhhhcCCCCChhhHHHHHH
Confidence 456778889999999985443 45667777665432111 112221111000000000011111111333
Q ss_pred HHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccCCCCCCCCCC
Q 019083 204 AKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHA 283 (346)
Q Consensus 204 tl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~~~Yp~y~ 283 (346)
-+..++.+++. +.++.+-..||+.+..+
T Consensus 71 H~~~w~~~~~~-~~~~alIlEDDv~~~~~--------------------------------------------------- 98 (128)
T cd06532 71 HYKLWQKIVES-NLEYALILEDDAILDPD--------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHc-CCCeEEEEccCcEECCC---------------------------------------------------
Confidence 44455555553 56899999999998877
Q ss_pred CCCceeeCHHHHHHHHHhcc
Q 019083 284 AGSIFVLSRNLAQYININSA 303 (346)
Q Consensus 284 ~G~~YviS~dla~~I~~~~~ 303 (346)
...+|+||+..|+.+.....
T Consensus 99 ~~~~Y~vs~~~A~~ll~~~~ 118 (128)
T cd06532 99 GTAGYLVSRKGAKKLLAALE 118 (128)
T ss_pred CceEEEeCHHHHHHHHHhCC
Confidence 34689999999999876544
No 30
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=83.59 E-value=7.5 Score=33.18 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=56.6
Q ss_pred HHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccCCCCCCCCCCCCCce
Q 019083 209 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIF 288 (346)
Q Consensus 209 ~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~~~Yp~y~~G~~Y 288 (346)
..+.+....+|++..|+|..+..+-|...+....+. ....|+.... .. ..-.....|+.+
T Consensus 72 n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~------------~~-------~~~~~~~~~~~~ 131 (182)
T cd06420 72 NKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLL------------NE-------KLTERGIRGCNM 131 (182)
T ss_pred HHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeec------------cc-------ccceeEeccceE
Confidence 444455578999999999999988888777765322 2222322100 00 000123457778
Q ss_pred eeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCC
Q 019083 289 VLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (346)
Q Consensus 289 viS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~ 323 (346)
.+.+.....+-.-......+..||+-++.-+...+
T Consensus 132 ~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 132 SFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred EEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 88888777554333333344579998887666555
No 31
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=83.52 E-value=5.7 Score=35.33 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=67.0
Q ss_pred HHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCce--EEEEee-c-Ccc----cccCC--CcccccCccccCCCC
Q 019083 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESA--YIGCMK-S-GDV----VTEEG--RQWYEPEWWKFGDGK 277 (346)
Q Consensus 208 f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~v--YiG~~~-~-g~v----ir~~~--~Kwyep~~~~f~~~~ 277 (346)
+..+.+.-+.+|++.+|+|+++.++.|..++......+.+ ..|... . ... .+... ...+.... ......
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 154 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVI-QPGRDR 154 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHH-HHHHhh
Confidence 3444455578999999999999998888887765432332 112111 0 100 00000 00000000 000001
Q ss_pred CCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCC--CcEecCCCc
Q 019083 278 SYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR--ATYKDDNRF 332 (346)
Q Consensus 278 ~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~--v~~vd~~~f 332 (346)
....++.|++.++++++.+.+-.-. ..+..||..++.-+...+ +..+++...
T Consensus 155 ~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 155 WGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred cCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccc
Confidence 1245678999999999998874221 234579999998776554 445555543
No 32
>PRK11204 N-glycosyltransferase; Provisional
Probab=83.16 E-value=48 Score=33.00 Aligned_cols=146 Identities=12% Similarity=0.138 Sum_probs=78.2
Q ss_pred hHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEee
Q 019083 174 DRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMK 253 (346)
Q Consensus 174 d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~ 253 (346)
.+.+++..+++..+..+. .. .| ..|.. .+..+.+..+.+|++..|+|..+..+.|.+.+......+++ |.+.
T Consensus 98 ~~~l~~~~~~~~~v~~i~-~~---~n-~Gka~-aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~ 169 (420)
T PRK11204 98 GEILDRLAAQIPRLRVIH-LA---EN-QGKAN-ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVT 169 (420)
T ss_pred HHHHHHHHHhCCcEEEEE-cC---CC-CCHHH-HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEE
Confidence 344555555565565442 22 23 23543 34556666778999999999999999888887765333332 3332
Q ss_pred cCcccccCCC---cccccCcccc-C-----C-CCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhC-
Q 019083 254 SGDVVTEEGR---QWYEPEWWKF-G-----D-GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV- 322 (346)
Q Consensus 254 ~g~vir~~~~---Kwyep~~~~f-~-----~-~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l- 322 (346)
..+.+.++.. +....++... + . ....+..++|.+.++.+++...+-.-. +..-.||+-++.-+...
T Consensus 170 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~G 246 (420)
T PRK11204 170 GNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLRG 246 (420)
T ss_pred CCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHcC
Confidence 2122222110 0000000000 0 0 001122357888999999988763221 22347999998766544
Q ss_pred -CCcEecCC
Q 019083 323 -RATYKDDN 330 (346)
Q Consensus 323 -~v~~vd~~ 330 (346)
.+...++.
T Consensus 247 ~~i~~~p~~ 255 (420)
T PRK11204 247 WDIRYEPRA 255 (420)
T ss_pred CeEEecccc
Confidence 44445543
No 33
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=83.05 E-value=9.4 Score=34.10 Aligned_cols=155 Identities=10% Similarity=0.128 Sum_probs=78.1
Q ss_pred cEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHH
Q 019083 157 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 236 (346)
Q Consensus 157 i~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~ 236 (346)
..+.+|...+.+ .....+ ++...+..+.+.. .+ | ..|..+ +..+.+..+.+|++.+|||+.+..+.|..
T Consensus 29 ~eiivvdd~s~d---~~~~~l-~~~~~~~~~~v~~--~~---~-~g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 29 LEIIVVTDGDDE---PYLSIL-SQTVKYGGIFVIT--VP---H-PGKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CEEEEEeCCCCh---HHHHHH-HhhccCCcEEEEe--cC---C-CChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 456666655432 222223 3445566665542 22 1 234432 23344445789999999999999999888
Q ss_pred HhhccCCCCceEEEEeecCcccccC-CCcc-------cccCccccCCC-C--CCCCCCCCCceeeCHHHHHHHHHhcc--
Q 019083 237 LLDRSRGQESAYIGCMKSGDVVTEE-GRQW-------YEPEWWKFGDG-K--SYFRHAAGSIFVLSRNLAQYININSA-- 303 (346)
Q Consensus 237 ~L~~~~~~~~vYiG~~~~g~vir~~-~~Kw-------yep~~~~f~~~-~--~Yp~y~~G~~YviS~dla~~I~~~~~-- 303 (346)
.+.... .+.+ |++......... ...| +.-..+..... . .-...+.|.+.++.++++..+.....
T Consensus 98 l~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~ 174 (235)
T cd06434 98 MLKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFT 174 (235)
T ss_pred HHHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhh
Confidence 887765 3332 222111011111 1111 00000000000 0 01123578888888888876532211
Q ss_pred -----cCCCCCcChHHHHHHHhhCCCc
Q 019083 304 -----SLKTYAHDDTSVGSWMMGVRAT 325 (346)
Q Consensus 304 -----~l~~~~~EDV~iG~wl~~l~v~ 325 (346)
..+....||..++.-+...+.+
T Consensus 175 ~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 175 NETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred hhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 1134567999998776655543
No 34
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.45 E-value=9.5 Score=32.55 Aligned_cols=114 Identities=10% Similarity=-0.022 Sum_probs=62.1
Q ss_pred HHHHHhhcCCceEEEEecCceeecHHHHHHHhhcc--CCCCceEEEEeec-CcccccCCCcccccCccccCCCCCCCCCC
Q 019083 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS--RGQESAYIGCMKS-GDVVTEEGRQWYEPEWWKFGDGKSYFRHA 283 (346)
Q Consensus 207 ~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~--~~~~~vYiG~~~~-g~vir~~~~Kwyep~~~~f~~~~~Yp~y~ 283 (346)
.+..+.+.-+.+|++-.|||..+..+.+...+... .+...+..|.... .........+...+.. ........+.
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 142 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFL---DKFLLYGMPI 142 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchh---hhHHhhcCcc
Confidence 34455555578999999999999999988887333 2344555554321 1000000111000100 0111233456
Q ss_pred CCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCCc
Q 019083 284 AGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 325 (346)
Q Consensus 284 ~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v~ 325 (346)
.|++.++++++...+-.....+ ...||.-+..-+...+..
T Consensus 143 ~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 143 CHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKI 182 (202)
T ss_pred cCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCc
Confidence 7788899999998874322222 235787776655544433
No 35
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=79.40 E-value=14 Score=31.76 Aligned_cols=134 Identities=10% Similarity=0.062 Sum_probs=70.5
Q ss_pred CcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHH
Q 019083 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (346)
Q Consensus 156 gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~ 235 (346)
.+.+..|-+.|.+. ....+++..+++..+.++. +.. | ..|. .++..+.+.-..+|++.+|+|.....+.|.
T Consensus 29 ~~eiivvdd~s~d~---t~~~~~~~~~~~~~i~~i~-~~~---n-~G~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 29 DYEIIFVDDGSTDR---TLEILRELAARDPRVKVIR-LSR---N-FGQQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CeEEEEEeCCCCcc---HHHHHHHHHhhCCCEEEEE-ecC---C-CCcH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 35666666555332 2233444444555555442 322 2 1232 233444444456999999999999988887
Q ss_pred HHhhccCCCCceEEEEeecCc--ccccCCCcccccCccccCCCCCCCCCCCCCceeeCHHHHHHHHH
Q 019083 236 GLLDRSRGQESAYIGCMKSGD--VVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYINI 300 (346)
Q Consensus 236 ~~L~~~~~~~~vYiG~~~~g~--vir~~~~Kwyep~~~~f~~~~~Yp~y~~G~~YviS~dla~~I~~ 300 (346)
..+....+...+.+|...... ....-..+.+......+. ....+...|+.+++++++...+-.
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLS--GVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHc--CCCCCCCCCCEEEEcHHHHHHHHh
Confidence 777765555566666543211 000000011100000111 123455678899999999998764
No 36
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=78.09 E-value=11 Score=36.15 Aligned_cols=134 Identities=10% Similarity=0.089 Sum_probs=73.9
Q ss_pred CCCeEEcCCCcccCCCc--hHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCc-eEEEEeecC---cc
Q 019083 184 TKDFLILEGHEEAQEEL--PKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES-AYIGCMKSG---DV 257 (346)
Q Consensus 184 ~~DIl~l~d~~DsY~nL--t~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~-vYiG~~~~g---~v 257 (346)
+.++.++. ..+ |+ ..=.-.+++.|....+. |++-.|+|+.+..+.|.++++.....+. ..+|..... +.
T Consensus 55 ~~~v~~i~-~~~---NlG~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~ 129 (305)
T COG1216 55 FPNVRLIE-NGE---NLGFAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESL 129 (305)
T ss_pred CCcEEEEE-cCC---CccchhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCc
Confidence 67887663 222 33 11112466666655222 9999999999999999999988754433 334433321 11
Q ss_pred cccCCC--------cc-cccCcc---ccCCCCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCC
Q 019083 258 VTEEGR--------QW-YEPEWW---KFGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (346)
Q Consensus 258 ir~~~~--------Kw-yep~~~---~f~~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~ 323 (346)
..+..+ .| +.+..- .+.......+++.|++.+|++++.+.+---.. ---...||+-++.=+...+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 130 YIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred chheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 100000 11 111000 00000112225799999999999999864222 1123689999887665554
No 37
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=76.68 E-value=48 Score=29.11 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=47.2
Q ss_pred CceEEEEecCceeecHHHHHHHhhc-cCCCCceEEEEee-cCcccccCCCccc---c---cCcc-ccCCCCCCCCCCCCC
Q 019083 216 DAEFYVKVDDNIDLDLEGLIGLLDR-SRGQESAYIGCMK-SGDVVTEEGRQWY---E---PEWW-KFGDGKSYFRHAAGS 286 (346)
Q Consensus 216 ~a~f~lKvDDDvfVn~~~L~~~L~~-~~~~~~vYiG~~~-~g~vir~~~~Kwy---e---p~~~-~f~~~~~Yp~y~~G~ 286 (346)
..+|++.+|+|..+.++.|..++.. ..+...+.+|... .+... ... .++ . ..++ .... ..-.++++|+
T Consensus 78 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 154 (224)
T cd06442 78 RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGW-GLKRKLISRGANLLARLLL-GRKVSDPTSG 154 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCC-cHHHHHHHHHHHHHHHHHc-CCCCCCCCCc
Confidence 4599999999999999988888876 3445556555432 11111 000 000 0 0000 0000 1123457888
Q ss_pred ceeeCHHHHHHHH
Q 019083 287 IFVLSRNLAQYIN 299 (346)
Q Consensus 287 ~YviS~dla~~I~ 299 (346)
+.+++++++..+-
T Consensus 155 ~~~~~r~~~~~ig 167 (224)
T cd06442 155 FRAYRREVLEKLI 167 (224)
T ss_pred cchhhHHHHHHHh
Confidence 8999999999886
No 38
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=76.13 E-value=57 Score=29.08 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=64.1
Q ss_pred HHHHHhhc--CCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCccccc----Cccc-cCC----
Q 019083 207 FFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEP----EWWK-FGD---- 275 (346)
Q Consensus 207 ~f~wa~~~--~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep----~~~~-f~~---- 275 (346)
.+.++.+. .+.+|++..|+|+.+.++.|..++.... .+. +|.+......++....++.. .|.. +..
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45566555 3479999999999999999988887653 222 23332111111111111110 0000 000
Q ss_pred CCC-CCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhC--CCcEecC
Q 019083 276 GKS-YFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV--RATYKDD 329 (346)
Q Consensus 276 ~~~-Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l--~v~~vd~ 329 (346)
... --.++.|.+.++++++...+---.. .+..||+-++.=+... .+...++
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcEEEEcch
Confidence 000 0124678889999999998742222 2358999988766544 4444544
No 39
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=74.63 E-value=57 Score=29.58 Aligned_cols=120 Identities=9% Similarity=0.011 Sum_probs=65.4
Q ss_pred HHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCC-Cce-EEEEe-ecCcccccCCCcccccCccc-cC------CC
Q 019083 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQ-ESA-YIGCM-KSGDVVTEEGRQWYEPEWWK-FG------DG 276 (346)
Q Consensus 207 ~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~-~~v-YiG~~-~~g~vir~~~~Kwyep~~~~-f~------~~ 276 (346)
....+.++-..+|++.+|+|+.+.++.|.+.+...... +.+ ++|.. ...........+++..+++. +. ..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666567999999999999999998888776422 332 22221 11000000000111100100 00 00
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCC--CcEecC
Q 019083 277 KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR--ATYKDD 329 (346)
Q Consensus 277 ~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~--v~~vd~ 329 (346)
...+..+.|++.++++++.+.+-.... ....||..++.=+...+ +..++.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEecc
Confidence 123335678889999999988743222 23479999987665444 444443
No 40
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=72.89 E-value=81 Score=29.34 Aligned_cols=34 Identities=6% Similarity=-0.105 Sum_probs=26.9
Q ss_pred HHHHHhhcCCceEEEEecCceeecHHHHHHHhhcc
Q 019083 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 241 (346)
Q Consensus 207 ~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~ 241 (346)
++++|.+ .+++|++..|||+.+..+.|...+...
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 5666654 378999999999999988877777654
No 41
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=70.81 E-value=69 Score=27.60 Aligned_cols=109 Identities=14% Similarity=0.175 Sum_probs=58.8
Q ss_pred HHHHhhcCCceEEEEecCceeecHHHHHHHhhccC--CCCceEEEEeecCcccccCCCccc----ccCccccCCCCCCCC
Q 019083 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR--GQESAYIGCMKSGDVVTEEGRQWY----EPEWWKFGDGKSYFR 281 (346)
Q Consensus 208 f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~--~~~~vYiG~~~~g~vir~~~~Kwy----ep~~~~f~~~~~Yp~ 281 (346)
+.++.+....+|++..|+|..+..+.|...+.... ++..+..+... ..+.....+ .+.| . ....+..
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~-~--~~~~~~~ 147 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDED----KIDEGGKRSEPFFKPDW-S--PDLLLSQ 147 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHH----hccCCCCEeccccCCCC-C--HHHhhhc
Confidence 44444455679999999999999988888887652 23333322111 111111111 1211 0 0001111
Q ss_pred CCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCCc
Q 019083 282 HAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 325 (346)
Q Consensus 282 y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v~ 325 (346)
-+.|++-++++++.+.+-.-... ....||.-++.-+...+.+
T Consensus 148 ~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 148 NYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred CCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 23456667899988877432221 2256998888776655543
No 42
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=68.32 E-value=17 Score=36.19 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCceEEEEecCceeecHH---HHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccCCCCCCC
Q 019083 204 AKFFFSTAVQIWDAEFYVKVDDNIDLDLE---GLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYF 280 (346)
Q Consensus 204 tl~~f~wa~~~~~a~f~lKvDDDvfVn~~---~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~~~Yp 280 (346)
.+.++.|+.+..++++++-+|||..+.++ -+.+.|..+...+++++ +..-. + .++..... -.+...|.
T Consensus 85 yk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~--ISa~N---d-nG~~~~~~---~~~~~lyr 155 (334)
T cd02514 85 YKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWC--ISAWN---D-NGKEHFVD---DTPSLLYR 155 (334)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEE--EEeec---c-CCcccccC---CCcceEEE
Confidence 33466666665679999999999999998 55666666655666543 32100 1 11111100 00111233
Q ss_pred -CCCCCCceeeCHHHHHHH
Q 019083 281 -RHAAGSIFVLSRNLAQYI 298 (346)
Q Consensus 281 -~y~~G~~YviS~dla~~I 298 (346)
.|+.|.|.++.+++-+.+
T Consensus 156 s~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 156 TDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ecCCCchHHHHHHHHHHHh
Confidence 466789999999988776
No 43
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=68.24 E-value=38 Score=33.46 Aligned_cols=160 Identities=11% Similarity=0.048 Sum_probs=90.8
Q ss_pred cEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHH
Q 019083 157 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 236 (346)
Q Consensus 157 i~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~ 236 (346)
..+..|...+ .|..-+.+.+-.+++++.+.+ ... -.+...| ...+.++...-+.++++..|-|+.+..+.|.+
T Consensus 85 ~evivv~d~~---~d~~~~~~~~~~~~~~~~~~~-~~~--~~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~ 157 (439)
T COG1215 85 YEVIVVDDGS---TDETYEILEELGAEYGPNFRV-IYP--EKKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALRE 157 (439)
T ss_pred ceEEEECCCC---ChhHHHHHHHHHhhcCcceEE-Eec--cccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHH
Confidence 4455555433 233444555555556433333 111 0121222 34556666666699999999999999999999
Q ss_pred HhhccCCCCce-EEEEeecCcccccC------CCcccccCcc-------ccCCCCCCCCCCCCCceeeCHHHHHHHHHhc
Q 019083 237 LLDRSRGQESA-YIGCMKSGDVVTEE------GRQWYEPEWW-------KFGDGKSYFRHAAGSIFVLSRNLAQYININS 302 (346)
Q Consensus 237 ~L~~~~~~~~v-YiG~~~~g~vir~~------~~Kwyep~~~-------~f~~~~~Yp~y~~G~~YviS~dla~~I~~~~ 302 (346)
.+......+.. +.|.. .++.. -.+-...++. ...........|.|...++.+++++.+-
T Consensus 158 ~~~~f~~~~~~~v~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g--- 230 (439)
T COG1215 158 LVSPFEDPPVGAVVGTP----RIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVG--- 230 (439)
T ss_pred HHhhhcCCCeeEEeCCc----eeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhC---
Confidence 99887544433 22221 11111 0110111100 0011123577889999999999999886
Q ss_pred ccCCCCCcChHHHHHHHhhCC--CcEecCC
Q 019083 303 ASLKTYAHDDTSVGSWMMGVR--ATYKDDN 330 (346)
Q Consensus 303 ~~l~~~~~EDV~iG~wl~~l~--v~~vd~~ 330 (346)
......--||..++..+...| +.++++.
T Consensus 231 ~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 231 GWLEDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CCCCCceeccHHHHHHHHHCCCeEEEeecc
Confidence 233455679999998887554 4455544
No 44
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=67.84 E-value=52 Score=28.85 Aligned_cols=110 Identities=7% Similarity=-0.055 Sum_probs=57.0
Q ss_pred HHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccCCCCCCCCCCCCCce
Q 019083 209 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIF 288 (346)
Q Consensus 209 ~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~~~Yp~y~~G~~Y 288 (346)
..+.+.-..+|++.+|+|..+..+.+.+.+......+ ..+|+......-......+.+-.++... .....+ ..+.+.
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 141 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRS-RLFGLP-YGDQGL 141 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhccccee-cccCCC-cCCceE
Confidence 3344444579999999999999888877766554333 3444321100000000010111111000 001112 235678
Q ss_pred eeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCC
Q 019083 289 VLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA 324 (346)
Q Consensus 289 viS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v 324 (346)
++++++.+.+-..... +..||.-++.=+...+.
T Consensus 142 ~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~ 174 (221)
T cd02522 142 FIRRELFEELGGFPEL---PLMEDVELVRRLRRRGR 174 (221)
T ss_pred EEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCC
Confidence 8999988777433222 27899988765554443
No 45
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=65.02 E-value=38 Score=28.74 Aligned_cols=130 Identities=11% Similarity=0.072 Sum_probs=67.0
Q ss_pred cEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHH
Q 019083 157 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 236 (346)
Q Consensus 157 i~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~ 236 (346)
..+..|-..+.+ .....++.-.+++..+.++. ..+.. . |. ..+..+.+.-..+|++..|+|..+.++.|.+
T Consensus 29 ~eiivvd~~s~d---~~~~~~~~~~~~~~~~~~~~-~~~n~---G-~~-~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 29 YEIIVVDDGSTD---GTAEIARELAARVPRVRVIR-LSRNF---G-KG-AAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred EEEEEEcCCCCC---ChHHHHHHHHHhCCCeEEEE-ccCCC---C-cc-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 444444444322 23344555455565544442 23322 1 21 3334444444459999999999999998888
Q ss_pred Hhhc-cCCCCceEEEEeecCcccccCCCccccc------Cc--cccCCCCCCCCCCCCCceeeCHHHHHHHH
Q 019083 237 LLDR-SRGQESAYIGCMKSGDVVTEEGRQWYEP------EW--WKFGDGKSYFRHAAGSIFVLSRNLAQYIN 299 (346)
Q Consensus 237 ~L~~-~~~~~~vYiG~~~~g~vir~~~~Kwyep------~~--~~f~~~~~Yp~y~~G~~YviS~dla~~I~ 299 (346)
++.. ......+..|........ ....++.. .+ ..+. ..-.+...|+.+++++++...+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGG--AGMPLLRRLGSRLFNFLIRLLL--GVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCc--ccchHHHHHHHHHHHHHHHHHc--CCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 344555666654311100 00111100 00 0011 11123356788899999999885
No 46
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=63.55 E-value=12 Score=35.81 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=35.4
Q ss_pred CCCceeeCHHHHHHHHHhccc----CCCCCcChHHHHHHHhhCCCcEecCCCc
Q 019083 284 AGSIFVLSRNLAQYININSAS----LKTYAHDDTSVGSWMMGVRATYKDDNRF 332 (346)
Q Consensus 284 ~G~~YviS~dla~~I~~~~~~----l~~~~~EDV~iG~wl~~l~v~~vd~~~f 332 (346)
+|+|++||..||+.|...... .+.+.--|-.+..|+..+++..-.++.|
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~ 64 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGF 64 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCc
Confidence 789999999999999764321 2333347888999998888765545444
No 47
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=63.50 E-value=40 Score=30.20 Aligned_cols=120 Identities=9% Similarity=0.029 Sum_probs=62.5
Q ss_pred HHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccc----c--Cc-cc---cCC-C
Q 019083 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE----P--EW-WK---FGD-G 276 (346)
Q Consensus 208 f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwye----p--~~-~~---f~~-~ 276 (346)
+..+.+..+.+|++.+|.|+.+.++.|...+... ..+. +|++.......++...|.. . .+ +. .+. .
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 4555556678999999999999999988844433 2232 2333211111111111110 0 00 00 000 0
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCC--CcEecCCCcc
Q 019083 277 KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR--ATYKDDNRFC 333 (346)
Q Consensus 277 ~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~--v~~vd~~~fc 333 (346)
...+..+.|++-++.+++...+---.. ....||+.++.-+...+ +.++++....
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~~~v~ 211 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDDVVVP 211 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEeccceee
Confidence 111122356666788888877632111 23579999987776444 5555554433
No 48
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=61.61 E-value=1.6e+02 Score=29.83 Aligned_cols=110 Identities=10% Similarity=0.165 Sum_probs=59.3
Q ss_pred HHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceE--EEEeecCc-ccccCCCc--cccc--Cccc----cCC
Q 019083 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAY--IGCMKSGD-VVTEEGRQ--WYEP--EWWK----FGD 275 (346)
Q Consensus 207 ~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vY--iG~~~~g~-vir~~~~K--wyep--~~~~----f~~ 275 (346)
++.++.++.+.+|++..|+|..+..+.|.+.+......+.+- .|.....+ ........ +... ++.+ +..
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~ 201 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLA 201 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHh
Confidence 345666666789999999999999999988887654333332 23332211 11000000 0100 0000 000
Q ss_pred ------CCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHH
Q 019083 276 ------GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWM 319 (346)
Q Consensus 276 ------~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl 319 (346)
....+..++|++.++.++++..+---. +..-.||.-++.-+
T Consensus 202 ~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl 248 (439)
T TIGR03111 202 GRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQI 248 (439)
T ss_pred hhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHH
Confidence 001222357888888998887653211 22348999998644
No 49
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=60.26 E-value=81 Score=24.68 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=24.2
Q ss_pred HHHhhcCCceEEEEecCceeecHHHHHHHhhc
Q 019083 209 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDR 240 (346)
Q Consensus 209 ~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~ 240 (346)
..+.+..+.+|++-+|+|..+.++.+...+..
T Consensus 70 ~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 70 NAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 33444447899999999999999888876444
No 50
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=59.48 E-value=1.2e+02 Score=26.19 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=61.2
Q ss_pred HHHHhhcCCceEEEEecCceeecHHHHHHHhhccC--CCCceEEEEeec--CcccccCCCcccccC----ccccCCCCCC
Q 019083 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR--GQESAYIGCMKS--GDVVTEEGRQWYEPE----WWKFGDGKSY 279 (346)
Q Consensus 208 f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~--~~~~vYiG~~~~--g~vir~~~~Kwyep~----~~~f~~~~~Y 279 (346)
+..+....+.+|++..|+|..+.++.|...+.... +.-.++.|.... +.... ...+. .|. +..+.. ..-
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~ 148 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGND-IGKRR-LPTSHDDILKFAR-RRS 148 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCe-ecccc-CCCCHHHHHHHhc-cCC
Confidence 44455556789999999999999988888777643 233344444321 11000 00000 111 001110 011
Q ss_pred CCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHh--hCCCcEecCC
Q 019083 280 FRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMM--GVRATYKDDN 330 (346)
Q Consensus 280 p~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~--~l~v~~vd~~ 330 (346)
+ ..|++.++.+.+...+-... +....||..+...+. |..+.++++.
T Consensus 149 -~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~ 196 (201)
T cd04195 149 -P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEI 196 (201)
T ss_pred -C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHH
Confidence 1 24566777777766552211 225789999887765 4455555443
No 51
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=58.65 E-value=1.6e+02 Score=27.72 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=85.9
Q ss_pred CCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCC-cccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHH
Q 019083 155 RGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGH-EEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 233 (346)
Q Consensus 155 ~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~-~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~ 233 (346)
..+.+++|=+.+. +..+..|.+-.+.++-+..+.+. .....+.+ | +..-+.+.-..+|++..|.|+.+.++.
T Consensus 33 ~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a-~---arN~g~~~A~~d~l~flD~D~i~~~~~ 105 (281)
T PF10111_consen 33 PDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA-K---ARNIGAKYARGDYLIFLDADCIPSPDF 105 (281)
T ss_pred CCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH-H---HHHHHHHHcCCCEEEEEcCCeeeCHHH
Confidence 3466666655543 23345666666666655122111 11112222 1 223334445789999999999999999
Q ss_pred HHHHhh---ccCC-CCceEEE-EeecCcccccC---CC--cccccCccccCC--CCCC-CCCCCCCceeeCHHHHHHHHH
Q 019083 234 LIGLLD---RSRG-QESAYIG-CMKSGDVVTEE---GR--QWYEPEWWKFGD--GKSY-FRHAAGSIFVLSRNLAQYINI 300 (346)
Q Consensus 234 L~~~L~---~~~~-~~~vYiG-~~~~g~vir~~---~~--Kwyep~~~~f~~--~~~Y-p~y~~G~~YviS~dla~~I~~ 300 (346)
+.+.+. .... ...++++ |.......... .. .|.....-.+.. ...+ .....|++.+++++.-..|--
T Consensus 106 i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGG 185 (281)
T PF10111_consen 106 IEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGG 185 (281)
T ss_pred HHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCC
Confidence 998888 3322 2233333 32211111100 00 111000000111 1111 123356999999999988865
Q ss_pred hcccCCCCCcChHHHHHHHhhCCC
Q 019083 301 NSASLKTYAHDDTSVGSWMMGVRA 324 (346)
Q Consensus 301 ~~~~l~~~~~EDV~iG~wl~~l~v 324 (346)
.-.....+..||.-++.=+...+.
T Consensus 186 fDE~f~G~G~ED~D~~~RL~~~~~ 209 (281)
T PF10111_consen 186 FDERFRGWGYEDIDFGYRLKKAGY 209 (281)
T ss_pred CCccccCCCcchHHHHHHHHHcCC
Confidence 555566788999998876655544
No 52
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=56.26 E-value=24 Score=32.51 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=59.0
Q ss_pred CCceEEEEecCceeecHHHHHHHhhccCCCCce--EEEEeecCcccccCCCccc----ccCcc------c-cCCCCCCCC
Q 019083 215 WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESA--YIGCMKSGDVVTEEGRQWY----EPEWW------K-FGDGKSYFR 281 (346)
Q Consensus 215 ~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~v--YiG~~~~g~vir~~~~Kwy----ep~~~------~-f~~~~~Yp~ 281 (346)
.+.+|++.+|.|+.+..+.|..++......+.+ ..|.... .++...|. .-+|+ + +...-.+..
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~----~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~ 147 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHP----MGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVT 147 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEE----cCCcchhHHHhHheehhhhhhhcccHHHcCCceE
Confidence 478999999999999999988887765333433 2232211 11100110 00110 0 000113456
Q ss_pred CCCCCceeeCHHHHHHHHHhccc----------C-------CCCCcChHHHHHHHhhCC
Q 019083 282 HAAGSIFVLSRNLAQYININSAS----------L-------KTYAHDDTSVGSWMMGVR 323 (346)
Q Consensus 282 y~~G~~YviS~dla~~I~~~~~~----------l-------~~~~~EDV~iG~wl~~l~ 323 (346)
.+.|+++++.+++...+...... + ...-.||..++..+...+
T Consensus 148 ~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G 206 (244)
T cd04190 148 CLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAG 206 (244)
T ss_pred ECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccC
Confidence 67899999999987765322111 0 112479999988776544
No 53
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=49.75 E-value=79 Score=30.86 Aligned_cols=134 Identities=7% Similarity=0.029 Sum_probs=67.9
Q ss_pred CcEEEEEecccCCCCchhhHHHHHHhhhCCC-eEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHH
Q 019083 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKD-FLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGL 234 (346)
Q Consensus 156 gi~vrFViG~s~~~~~~~d~~I~~E~~~~~D-Il~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L 234 (346)
.+.+.+|-..|.+. + .+.+++-.+.+++ ++.+ ....++ .|.- ++....++-+.+|++..|+|.-.+++.+
T Consensus 38 ~~EIIvVDDgS~D~--T-~~il~~~~~~~~~~v~~i-~~~~n~----G~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 38 EYEILLIDDGSSDN--S-AEMLVEAAQAPDSHIVAI-LLNRNY----GQHS-AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CEEEEEEeCCCCCc--H-HHHHHHHHhhcCCcEEEE-EeCCCC----CHHH-HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 46778887666442 2 2233332333444 3322 122222 2222 2223333446899999999999999999
Q ss_pred HHHhhccCCCCceEEEEeec--CcccccCCCcccccCccccCCCCCCCCCCCCCceeeCHHHHHHHHH
Q 019083 235 IGLLDRSRGQESAYIGCMKS--GDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYINI 300 (346)
Q Consensus 235 ~~~L~~~~~~~~vYiG~~~~--g~vir~~~~Kwyep~~~~f~~~~~Yp~y~~G~~YviS~dla~~I~~ 300 (346)
.++++......++..|.... .+..+.-.++.+.--...+ .+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~-~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT-TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88887764333454444321 1222211122111100011 12344444333 35899999998853
No 54
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=49.68 E-value=2.9e+02 Score=27.94 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=82.8
Q ss_pred CcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHH
Q 019083 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (346)
Q Consensus 156 gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~ 235 (346)
+..+.+|-..+. +...+.+++..+++..+.++. .. .| ..|. ..++.+....+.+|++..|+|..+..+.|.
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~-~~---~n-~Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~ 174 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIH-LA---HN-QGKA-IALRMGAAAARSEYLVCIDGDALLDKNAVP 174 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEE-eC---CC-CCHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHH
Confidence 456555544432 223344555555666554432 11 12 2243 345556666678999999999999999988
Q ss_pred HHhhccCCCCceEEEEeecCcccccCC---CcccccCcccc-C------CCCCCCCCCCCCceeeCHHHHHHHHHhcccC
Q 019083 236 GLLDRSRGQESAYIGCMKSGDVVTEEG---RQWYEPEWWKF-G------DGKSYFRHAAGSIFVLSRNLAQYININSASL 305 (346)
Q Consensus 236 ~~L~~~~~~~~vYiG~~~~g~vir~~~---~Kwyep~~~~f-~------~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l 305 (346)
..+......+++ |++...+.+.+.. .+....++..+ + ....-+..++|.+.++.+++.+.+---.
T Consensus 175 ~lv~~~~~~~~~--g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~--- 249 (444)
T PRK14583 175 YLVAPLIANPRT--GAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS--- 249 (444)
T ss_pred HHHHHHHhCCCe--EEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---
Confidence 887765333332 4443222222211 11111111000 0 0000122357888899999988774222
Q ss_pred CCCCcChHHHHHHHhhCCCc
Q 019083 306 KTYAHDDTSVGSWMMGVRAT 325 (346)
Q Consensus 306 ~~~~~EDV~iG~wl~~l~v~ 325 (346)
+..-.||.-+|.-+...|.+
T Consensus 250 ~~~i~ED~dl~~rl~~~G~~ 269 (444)
T PRK14583 250 PDMITEDIDISWKLQLKHWS 269 (444)
T ss_pred CCcccccHHHHHHHHHcCCe
Confidence 22346999999877655543
No 55
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=45.62 E-value=1.9e+02 Score=24.70 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=52.2
Q ss_pred HHHHHHhhc-CCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccc----cCcc---ccCC-C
Q 019083 206 FFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE----PEWW---KFGD-G 276 (346)
Q Consensus 206 ~~f~wa~~~-~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwye----p~~~---~f~~-~ 276 (346)
.+++++... .+.+|++.+|.|+.+.++.|..++........+..|+..... +...|.. -.+. .+.. +
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN----PDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC----CccCHHHHHHHHHHHHHHHHHHHH
Confidence 455555422 468999999999999998888887776554556666553211 1112210 0000 0000 0
Q ss_pred ---CCCCCCCCCCceeeCHHHHHH
Q 019083 277 ---KSYFRHAAGSIFVLSRNLAQY 297 (346)
Q Consensus 277 ---~~Yp~y~~G~~YviS~dla~~ 297 (346)
-.-+.++.|.++++++++.+.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 022346789999999999887
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=41.80 E-value=2.2e+02 Score=24.88 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=50.8
Q ss_pred CcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHH
Q 019083 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (346)
Q Consensus 156 gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~ 235 (346)
.+.+..|-+.|.+ .....+++..+++...+++-.... |. .+. .++..+.+.-..+|++.+|+|..+.++.+.
T Consensus 30 ~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~---n~-G~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPK---NR-GKG-GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEccc---CC-CcH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 4666666665533 223445555555665422101222 21 222 223333334456999999999999999998
Q ss_pred HHhhc-cCCCCceEEEEe
Q 019083 236 GLLDR-SRGQESAYIGCM 252 (346)
Q Consensus 236 ~~L~~-~~~~~~vYiG~~ 252 (346)
.++.. ......+.+|..
T Consensus 102 ~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 102 KLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHhccCCcEEEEEe
Confidence 88886 344456677754
No 57
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=39.91 E-value=3.2e+02 Score=25.62 Aligned_cols=120 Identities=10% Similarity=0.055 Sum_probs=67.6
Q ss_pred CchHHHHHHHHHHhhc-CCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCccc----------c
Q 019083 199 ELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWY----------E 267 (346)
Q Consensus 199 nLt~Ktl~~f~wa~~~-~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwy----------e 267 (346)
|.-.|+-..-...... .+.+|++-.|-|+.+.++.|..++......+. +|.+.......+..+-+. .
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 4444555544433332 46799999999999999999998877633333 243321111111111110 0
Q ss_pred c------CccccCCCCCCCCCCCCCceeeCHHHHHHHHHhcc-----cC-CCCCcChHHHHHHHhhCCCc
Q 019083 268 P------EWWKFGDGKSYFRHAAGSIFVLSRNLAQYININSA-----SL-KTYAHDDTSVGSWMMGVRAT 325 (346)
Q Consensus 268 p------~~~~f~~~~~Yp~y~~G~~YviS~dla~~I~~~~~-----~l-~~~~~EDV~iG~wl~~l~v~ 325 (346)
| .+|. ..-.+|.|...++.++....+..... -. ...-.||..+|..+...+-+
T Consensus 155 ~~~~~~~~~~~-----~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~r 219 (254)
T cd04191 155 PVFGRGLAAWQ-----GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWE 219 (254)
T ss_pred HHHHHHHHHhc-----CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCE
Confidence 0 0110 11235679999999998877532211 11 23468999999888755543
No 58
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=31.31 E-value=4e+02 Score=24.08 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=50.6
Q ss_pred HHHHHhhcCCceEEEEecCceeecHHHHHHHhhccC-CCCceEEEEeec-CcccccCCCccc---ccCcc----ccCCCC
Q 019083 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKS-GDVVTEEGRQWY---EPEWW----KFGDGK 277 (346)
Q Consensus 207 ~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~-~~~~vYiG~~~~-g~vir~~~~Kwy---ep~~~----~f~~~~ 277 (346)
++..+.+.-+.+|++.+|+|..++++.|..++.... ....+.+|.... +.-. .+..|. .+... ....+
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~- 160 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGV--HGWDLRRKLTSRGANVLAQTLLW- 160 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCc--CCccHHHHHHHHHHHHHHHHHhC-
Confidence 334444445679999999999999998888776553 244555564321 1000 000111 10000 00000
Q ss_pred CCCCCCCCCceeeCHHHHHHHHH
Q 019083 278 SYFRHAAGSIFVLSRNLAQYINI 300 (346)
Q Consensus 278 ~Yp~y~~G~~YviS~dla~~I~~ 300 (346)
..-+..+|++.++++++++.+..
T Consensus 161 ~~~~d~~g~~~~~rr~~~~~i~~ 183 (243)
T PLN02726 161 PGVSDLTGSFRLYKRSALEDLVS 183 (243)
T ss_pred CCCCcCCCcccceeHHHHHHHHh
Confidence 11123578888999999998864
No 59
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=27.69 E-value=1.6e+02 Score=32.08 Aligned_cols=128 Identities=18% Similarity=0.082 Sum_probs=71.2
Q ss_pred CchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeec-----C-ccc-ccCCCccccc-Cc
Q 019083 199 ELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKS-----G-DVV-TEEGRQWYEP-EW 270 (346)
Q Consensus 199 nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~-----g-~vi-r~~~~Kwyep-~~ 270 (346)
|...|.-. +..+.++.+.+|++..|.|..+..+.|.+.+......+.+ |.+.. + .++ ++-......| +.
T Consensus 212 n~~~KAgn-LN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v--~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~ 288 (713)
T TIGR03030 212 NVHAKAGN-INNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKL--FLVQTPHFFVSPDPIERNLGTFRRMPNEN 288 (713)
T ss_pred CCCCChHH-HHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCE--EEEeCCeeccCCCHHhhhhHHHHHhhhHH
Confidence 44456443 5666677788999999999999999888877665333333 22211 1 111 1000000001 00
Q ss_pred cccC----CCCC--CCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCCCc--EecCCCc
Q 019083 271 WKFG----DGKS--YFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT--YKDDNRF 332 (346)
Q Consensus 271 ~~f~----~~~~--Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~v~--~vd~~~f 332 (346)
..|+ .+.. -.+++.|.+.++.+++...+---.. ..-.||..++.-+...|.+ ++++...
T Consensus 289 ~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~ 355 (713)
T TIGR03030 289 ELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLI 355 (713)
T ss_pred HHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEeccccc
Confidence 0000 0100 1246679999999999987742111 2247999999888765544 4555433
No 60
>PLN03181 glycosyltransferase; Provisional
Probab=27.48 E-value=2.9e+02 Score=28.61 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=51.9
Q ss_pred HHHHHHhccCCcchhhhhcCCcEEEEEecccC----C-CCch-hhHHHH---HHhhhCC-CeEEcCCCcc-cCCCchHHH
Q 019083 136 NVYRGSWMPKGDALKKLEERGVVIRFVIGRSA----N-RGDS-LDRKID---AENRETK-DFLILEGHEE-AQEELPKKA 204 (346)
Q Consensus 136 ~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~----~-~~~~-~d~~I~---~E~~~~~-DIl~l~d~~D-sY~nLt~Kt 204 (346)
|.-|+.|.+..+.... ..+-.|+-|.|..+ + .++. +.+.++ +=+++|| ++.+.....+ .+.....|.
T Consensus 109 D~kR~~Wl~~~p~~~~--~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaKi 186 (453)
T PLN03181 109 DEKRAEWLKLHPSFAP--GAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAKL 186 (453)
T ss_pred HHHHHHHHHhCCCCCC--CCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhHH
Confidence 4556677765442111 12245666666542 1 1222 233332 1234555 3332211222 566668888
Q ss_pred HHHHHHHhhcCCceEEEEecCceee
Q 019083 205 KFFFSTAVQIWDAEFYVKVDDNIDL 229 (346)
Q Consensus 205 l~~f~wa~~~~~a~f~lKvDDDvfV 229 (346)
..+-.-..++|+++|+.-+|-|+++
T Consensus 187 palRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 187 PVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHCCCceEEEEecCCcee
Confidence 8887778888999999999999988
No 61
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=26.77 E-value=86 Score=20.11 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.1
Q ss_pred CchhHHHHHHHHHHHHHHHhcc
Q 019083 23 TSKPSVVLAFFSCLAWLYVAGR 44 (346)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~ 44 (346)
+--|+.++.+|+|-+.+.|=||
T Consensus 5 ~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 5 SLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHhccceeEEEec
Confidence 3458999999999999999888
No 62
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=26.50 E-value=63 Score=24.21 Aligned_cols=16 Identities=31% Similarity=0.092 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 019083 27 SVVLAFFSCLAWLYVA 42 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~ 42 (346)
++++|++|+.+|.+++
T Consensus 42 ~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 42 VVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3578999999998876
No 63
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=24.94 E-value=70 Score=30.20 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=28.6
Q ss_pred CceEEEEecCceeecHHHHHHHhhccCCCCceEEEEe
Q 019083 216 DAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCM 252 (346)
Q Consensus 216 ~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~ 252 (346)
..+-|+-+|||+.++.+.|...+...+..+.-.+|..
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 5788999999999999999888877766666677854
No 64
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=24.51 E-value=4.8e+02 Score=22.83 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEe
Q 019083 209 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCM 252 (346)
Q Consensus 209 ~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~ 252 (346)
..+.+.-..+|++.+|+|..+.++.+...+......+...+|+-
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 34444456799999999999999888776655433334455653
No 65
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=24.06 E-value=5e+02 Score=25.14 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=52.7
Q ss_pred CCcEEEEEecccCCCCchhhHHHHHHh----------hhCCCeEEcC-CCccc------------CCCchHHHHHHH-HH
Q 019083 155 RGVVIRFVIGRSANRGDSLDRKIDAEN----------RETKDFLILE-GHEEA------------QEELPKKAKFFF-ST 210 (346)
Q Consensus 155 ~gi~vrFViG~s~~~~~~~d~~I~~E~----------~~~~DIl~l~-d~~Ds------------Y~nLt~Ktl~~f-~w 210 (346)
.-|.+-|+++.+.. ++...+.++++. ..|+.|.++. ||.+. ....-++.++-. .|
T Consensus 55 ~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~ 133 (269)
T PF03452_consen 55 ELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNF 133 (269)
T ss_pred hheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHH
Confidence 34888999999852 334444555443 3456666542 23221 111122333211 23
Q ss_pred Hhhc---CCceEEEEecCceeecHHHHHHHhhccC
Q 019083 211 AVQI---WDAEFYVKVDDNIDLDLEGLIGLLDRSR 242 (346)
Q Consensus 211 a~~~---~~a~f~lKvDDDvfVn~~~L~~~L~~~~ 242 (346)
+... |..+|++-.|-|+.-.++.|++.|..+.
T Consensus 134 LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 3222 6899999999999999999999998874
No 66
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=23.80 E-value=90 Score=28.83 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHhc------cccccccchHH
Q 019083 25 KPSVVLAFFSCLAWLYVAG------RLWQDAENRTL 54 (346)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 54 (346)
...+++|-.||+.|++|++ =||+.+.+.+.
T Consensus 8 ~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t~~~ 43 (196)
T smart00786 8 GTALIIGSTSFFLGILFANFPYDYPLLWSPDPTPSA 43 (196)
T ss_pred ccchhhhhHHHHHHHHHhcCccccchhcCCCCCHHH
Confidence 3579999999999999998 47988765443
No 67
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=23.43 E-value=2.2e+02 Score=28.47 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=46.2
Q ss_pred hHHHHHHhhhCCCeEEcC----CCcccCCCchHHHHHHHHHHhhc-CCceEEEEecCceeecHHHHHHHhhc
Q 019083 174 DRKIDAENRETKDFLILE----GHEEAQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDR 240 (346)
Q Consensus 174 d~~I~~E~~~~~DIl~l~----d~~DsY~nLt~Ktl~~f~wa~~~-~~a~f~lKvDDDvfVn~~~L~~~L~~ 240 (346)
.+-|.+=.++|-+++-+. .....-.....+...++.|+... +..+|++|+|.|-..+...|.+..-.
T Consensus 128 ~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~ 199 (347)
T PF06306_consen 128 EEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYI 199 (347)
T ss_pred HHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhee
Confidence 445555567888877541 00111122234566788899888 88999999999999999999776644
No 68
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=23.43 E-value=2.7e+02 Score=27.28 Aligned_cols=22 Identities=14% Similarity=0.213 Sum_probs=17.0
Q ss_pred CCceEEEEecCceeecHHHHHH
Q 019083 215 WDAEFYVKVDDNIDLDLEGLIG 236 (346)
Q Consensus 215 ~~a~f~lKvDDDvfVn~~~L~~ 236 (346)
..++||+-..||+....+-+-.
T Consensus 168 ~~~~YyL~LEDDVia~~~f~~~ 189 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPGFLSR 189 (297)
T ss_pred hcCCeEEEecCCeEechhHHHH
Confidence 3678999999999987664433
No 69
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=22.46 E-value=2.8e+02 Score=27.21 Aligned_cols=159 Identities=11% Similarity=0.099 Sum_probs=87.2
Q ss_pred CCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCc--ccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHH
Q 019083 155 RGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHE--EAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLE 232 (346)
Q Consensus 155 ~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~--DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~ 232 (346)
.++.+.|+=|.+ ..++.|..=.....-++.++ +. +.+..-+.-...+..|+.+..+..+++..|=|+|...+
T Consensus 37 ~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~-~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~d 110 (346)
T COG4092 37 DITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLD-FGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSD 110 (346)
T ss_pred ccEEEEEEecch-----hHHHHHHHHhccccceEEEe-cCCCccccchhhhhhccchhhhccccccEEEEEeccccccHH
Confidence 456677776654 35666666666666666663 33 23333244445567778777899999999999999999
Q ss_pred HHHHHhhcc-----CC--CCceEEE--Eee--cCcccccCCC-cc----cccCccccCCCCCCCCCCCCCceeeCHHHHH
Q 019083 233 GLIGLLDRS-----RG--QESAYIG--CMK--SGDVVTEEGR-QW----YEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQ 296 (346)
Q Consensus 233 ~L~~~L~~~-----~~--~~~vYiG--~~~--~g~vir~~~~-Kw----yep~~~~f~~~~~Yp~y~~G~~YviS~dla~ 296 (346)
++.+.|.-- +. ...+..- +.. .+.+.-+-.+ +| .++....+..+..++.=..-+..++.++.-.
T Consensus 111 nF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~ 190 (346)
T COG4092 111 NFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFS 190 (346)
T ss_pred HHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhCcccccccccccceEEEehhHHH
Confidence 999988321 11 1111111 111 1111111111 11 0110011222222322224567888888877
Q ss_pred HHHHhcccCCCCCcChHH-HHHHH
Q 019083 297 YININSASLKTYAHDDTS-VGSWM 319 (346)
Q Consensus 297 ~I~~~~~~l~~~~~EDV~-iG~wl 319 (346)
...-......-+..||.- +....
T Consensus 191 ~tgGydE~F~GhG~EDfe~~~R~~ 214 (346)
T COG4092 191 LTGGYDERFRGHGSEDFEFLTRLG 214 (346)
T ss_pred HhcCCccccccCCchhHHHHHHHH
Confidence 777666777788899973 44433
No 70
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=20.44 E-value=1.2e+03 Score=25.73 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=98.4
Q ss_pred ceEEEEEEEcCCCCHH-HHHHHHHHhccCCcchhhhh-cCCcEEEEEecccCCCCchh--hHHHHHHhhhCC---CeEEc
Q 019083 118 KLLAVIGVYTGFGSHL-NRNVYRGSWMPKGDALKKLE-ERGVVIRFVIGRSANRGDSL--DRKIDAENRETK---DFLIL 190 (346)
Q Consensus 118 k~~llI~I~S~~~~~~-rR~aIR~TW~~~~~~l~~l~-~~gi~vrFViG~s~~~~~~~--d~~I~~E~~~~~---DIl~l 190 (346)
...+.|.|.+--...+ -+..|+.+..+-.. .. ...+.+ ||+..+.++.... ..++.+=.++|+ .|...
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr 197 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYR 197 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 3455565665544332 23567777653211 00 123444 8887765432111 011222233343 34432
Q ss_pred CCCcccCCCchHHHHHHHHHHhhc-CCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcc----
Q 019083 191 EGHEEAQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQW---- 265 (346)
Q Consensus 191 ~d~~DsY~nLt~Ktl~~f~wa~~~-~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kw---- 265 (346)
.--.|.-.|.-..-.+.... .+++|++-.|-|+.+..+.|.+++......++ +|.+...+...+..+-+
T Consensus 198 ----~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~q 271 (691)
T PRK05454 198 ----RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARLQ 271 (691)
T ss_pred ----ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHHH
Confidence 12234455666555555443 56799999999999999999998876533333 35554322222211111
Q ss_pred ------ccc------CccccCCCCCCCCCCCCCceeeCHHHHHHHHH-----h-cccCCCCCcChHHHHHHHhhCC--Cc
Q 019083 266 ------YEP------EWWKFGDGKSYFRHAAGSIFVLSRNLAQYINI-----N-SASLKTYAHDDTSVGSWMMGVR--AT 325 (346)
Q Consensus 266 ------yep------~~~~f~~~~~Yp~y~~G~~YviS~dla~~I~~-----~-~~~l~~~~~EDV~iG~wl~~l~--v~ 325 (346)
|.+ .||..+.+ .+.|-..++.++....+-. . ...-...--||...|..+...+ |.
T Consensus 272 qf~~~~y~~~~~~G~~~w~~~~g-----~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~ 346 (691)
T PRK05454 272 QFATRVYGPLFAAGLAWWQGGEG-----NYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVW 346 (691)
T ss_pred HHHHHHHHHHHHhhhhhhccCcc-----ccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEE
Confidence 111 11211111 1246667888886654421 0 1111233578999998887555 44
Q ss_pred EecCC
Q 019083 326 YKDDN 330 (346)
Q Consensus 326 ~vd~~ 330 (346)
.+++.
T Consensus 347 ~~pd~ 351 (691)
T PRK05454 347 LAPDL 351 (691)
T ss_pred EcCcc
Confidence 56553
Done!