Query 019083
Match_columns 346
No_of_seqs 228 out of 1239
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 8.3E-23 2.8E-27 194.0 16.1 194 118-337 12-217 (280)
2 1xhb_A Polypeptide N-acetylgal 90.5 6.2 0.00021 38.4 15.2 163 158-328 63-251 (472)
3 2d7i_A Polypeptide N-acetylgal 90.5 7.4 0.00025 39.3 16.2 162 158-327 146-330 (570)
4 4fix_A UDP-galactofuranosyl tr 86.8 7.9 0.00027 40.2 13.7 116 206-323 258-403 (657)
5 2ffu_A Ppgalnact-2, polypeptid 83.5 31 0.0011 33.7 15.7 159 158-328 100-283 (501)
6 2z86_A Chondroitin synthase; G 79.0 39 0.0013 33.8 14.9 125 208-332 166-327 (625)
7 1qg8_A Protein (spore coat pol 77.7 33 0.0011 29.5 15.8 118 205-329 77-208 (255)
8 2z86_A Chondroitin synthase; G 70.2 45 0.0015 33.4 12.7 158 156-329 404-566 (625)
9 3bcv_A Putative glycosyltransf 67.8 55 0.0019 27.6 13.7 164 156-330 34-220 (240)
10 4hg6_A Cellulose synthase subu 58.3 74 0.0025 33.5 12.0 130 201-334 224-367 (802)
11 2fy7_A Beta-1,4-galactosyltran 39.2 1.3E+02 0.0045 27.4 9.1 93 211-325 124-218 (287)
12 2bo4_A Mannosylglycerate synth 35.2 76 0.0026 30.7 7.0 167 156-327 28-209 (397)
13 2lnd_A De novo designed protei 32.6 25 0.00087 27.0 2.4 72 125-214 31-105 (112)
14 1vf5_H Protein PET N; photosyn 24.5 55 0.0019 20.1 2.4 23 22-44 4-26 (29)
15 1q90_N Cytochrome B6F complex 23.8 57 0.0019 20.3 2.4 22 23-44 7-28 (31)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.89 E-value=8.3e-23 Score=194.04 Aligned_cols=194 Identities=15% Similarity=0.172 Sum_probs=130.3
Q ss_pred ceEEEEEEEcCCCC-HHHHHHHHHHhccCCcchhhhhcCCcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCc--
Q 019083 118 KLLAVIGVYTGFGS-HLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHE-- 194 (346)
Q Consensus 118 k~~llI~I~S~~~~-~~rR~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~-- 194 (346)
.-.|+|+|+|++++ ..|+.+||+||++... .. .||++... +..+... ..++++.. ++.
T Consensus 12 ~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~--------~~--~fifsd~~------d~~l~~~--~~~~~~~~-~~~~~ 72 (280)
T 2j0a_A 12 LGDIFIAVKTTWAFHRSRLDLLLDTWVSRIR--------QQ--TFIFTDSP------DERLQER--LGPHLVVT-QCSAE 72 (280)
T ss_dssp GGGEEEEEECCGGGTTTTHHHHHHTGGGGSG--------GG--EEEEESSC------CHHHHHH--HGGGEEEC-CC---
T ss_pred cccEEEEEECcHHHHHHHHHHHHHHHhccCC--------Cc--eEEEcCCC------ccccccc--ccccceec-ccccc
Confidence 45677899999985 5688999999998763 11 24333321 1233332 24566654 453
Q ss_pred ccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccC
Q 019083 195 EAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFG 274 (346)
Q Consensus 195 DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~ 274 (346)
+++.+++.|+...+.+... ++++|++|+|||+|||+++|.++|..+.+..++|+|+...+.+++. +++.|.+. +
T Consensus 73 ~~~~~l~~K~~~~~~~~l~-~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~---~~~~~~~~--~ 146 (280)
T 2j0a_A 73 HSHPALSCKMAAEFDAFLV-SGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHA---SELQSKQR--T 146 (280)
T ss_dssp ----CCCHHHHHHHHHHHH-HTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC--------------------
T ss_pred ccccchHHHHHHHHHHHhC-CCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccc---cccCcccc--c
Confidence 4678899999999997643 5899999999999999999999999999999999998865444432 34444321 1
Q ss_pred CCCCCCCCCC-CCceeeCHHHHHHHHHhcccC-------CCCCcChHHHHHHHh-hCCCcEecCCCcccCCC
Q 019083 275 DGKSYFRHAA-GSIFVLSRNLAQYININSASL-------KTYAHDDTSVGSWMM-GVRATYKDDNRFCCSSI 337 (346)
Q Consensus 275 ~~~~Yp~y~~-G~~YviS~dla~~I~~~~~~l-------~~~~~EDV~iG~wl~-~l~v~~vd~~~fc~~~~ 337 (346)
....| +||+ |+||+||+++++.|+...... .....||+++|.|+. .++|...+...|...-+
T Consensus 147 ~~~~~-~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~~ 217 (280)
T 2j0a_A 147 KLVRF-WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLE 217 (280)
T ss_dssp ----C-CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSSS
T ss_pred ccccc-CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCCc
Confidence 21234 5775 578999999999998643222 223468999999998 99999999999986554
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=90.50 E-value=6.2 Score=38.36 Aligned_cols=163 Identities=18% Similarity=0.214 Sum_probs=83.6
Q ss_pred EEEEEecccCCCCchhhHHHHHHhhhCC-CeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHH
Q 019083 158 VIRFVIGRSANRGDSLDRKIDAENRETK-DFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 236 (346)
Q Consensus 158 ~vrFViG~s~~~~~~~d~~I~~E~~~~~-DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~ 236 (346)
.|+.|-..|.+ +...+.+++-.+++. .+.++. ..+ |.- + -.+...+.+.-..+|++..|+|+.++++-|..
T Consensus 63 EIIvVDd~S~d--~~t~~~l~~~~~~~~~~v~vi~-~~~---n~G-~-~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 63 EIVLVDDASER--DFLKRPLESYVKKLKVPVHVIR-MEQ---RSG-L-IRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEECSCCC--GGGTHHHHHHHHSSSSCEEEEE-CSS---CCC-H-HHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred EEEEEECCCCc--HHHHHHHHHHHHHCCCcEEEEE-CCC---CCC-h-HHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 45555443322 123444555445666 455442 222 221 2 22334444455689999999999999888887
Q ss_pred HhhccCCCCc-eEEEEee--cCcccc-cCCC-------cccccCcc-cc---------CC--CCCCCCCCCCCceeeCHH
Q 019083 237 LLDRSRGQES-AYIGCMK--SGDVVT-EEGR-------QWYEPEWW-KF---------GD--GKSYFRHAAGSIFVLSRN 293 (346)
Q Consensus 237 ~L~~~~~~~~-vYiG~~~--~g~vir-~~~~-------Kwyep~~~-~f---------~~--~~~Yp~y~~G~~YviS~d 293 (346)
++......+. +.+|... ...... .... .|.....| .+ .+ .....+++.|++++++++
T Consensus 135 ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 214 (472)
T 1xhb_A 135 LLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRD 214 (472)
T ss_dssp HHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHH
T ss_pred HHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHH
Confidence 7776533333 3333321 111000 0000 01100000 00 00 012345788999999999
Q ss_pred HHHHHHHhcccCCCCCcChHHHHH--HHhhCCCcEec
Q 019083 294 LAQYININSASLKTYAHDDTSVGS--WMMGVRATYKD 328 (346)
Q Consensus 294 la~~I~~~~~~l~~~~~EDV~iG~--wl~~l~v~~vd 328 (346)
+...+-.-...+..+..||+-++. |..|..+..+.
T Consensus 215 ~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p 251 (472)
T 1xhb_A 215 YFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVT 251 (472)
T ss_dssp HHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEE
T ss_pred HHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEcc
Confidence 999885444444555689987765 44555444433
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=90.49 E-value=7.4 Score=39.33 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=82.8
Q ss_pred EEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHH
Q 019083 158 VIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGL 237 (346)
Q Consensus 158 ~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~ 237 (346)
.|+.|-..|.+ +++.+.+++-.+++..|-++. ..+. ..+.. +...+.+.-..+|++..|+|+.++++-|..+
T Consensus 146 EIIVVDDgS~D--~tl~~~l~~~~~~~~~v~vi~-~~~n-~G~~~----A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 146 EIVLVDDFSDR--EHLKKPLEDYMALFPSVRILR-TKKR-EGLIR----TRMLGASVATGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp EEEEEECSCCC--GGGTHHHHHHHTTSTTEEEEE-CSSC-CCHHH----HHHHHHHHCCSSEEEECCSSEEECTTCSHHH
T ss_pred EEEEEECCCCc--HHHHHHHHHHHHhCCeEEEEE-CCCC-CCHHH----HHHHHHHhcCCCEEEEEcCCccccccHHHHH
Confidence 45555444422 222445555556666665552 2221 22232 2333334446799999999999988877777
Q ss_pred hhccCCCCceEEEEee---cCccc--ccC--C-C----ccccc-Cccc------cC--CCCCCCCCCCCCceeeCHHHHH
Q 019083 238 LDRSRGQESAYIGCMK---SGDVV--TEE--G-R----QWYEP-EWWK------FG--DGKSYFRHAAGSIFVLSRNLAQ 296 (346)
Q Consensus 238 L~~~~~~~~vYiG~~~---~g~vi--r~~--~-~----Kwyep-~~~~------f~--~~~~Yp~y~~G~~YviS~dla~ 296 (346)
+......+.+.++... .+..+ ... . . .|... .+.. +. ......+++.|+++++++++..
T Consensus 218 l~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~ 297 (570)
T 2d7i_A 218 LDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFW 297 (570)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHH
T ss_pred HHHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHH
Confidence 6655333344443221 11110 000 0 0 01000 0000 00 0011234678999999999999
Q ss_pred HHHHhcccCCCCCcChHHHHH--HHhhCCCcEe
Q 019083 297 YININSASLKTYAHDDTSVGS--WMMGVRATYK 327 (346)
Q Consensus 297 ~I~~~~~~l~~~~~EDV~iG~--wl~~l~v~~v 327 (346)
.+-.-...+..+..||+-+.. |..|..+..+
T Consensus 298 ~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~ 330 (570)
T 2d7i_A 298 ELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDI 330 (570)
T ss_dssp HTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred hcCCCCCcccccCcchHHHHHHHHhCCCeEEEc
Confidence 885444444555579998765 4445544333
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=86.83 E-value=7.9 Score=40.17 Aligned_cols=116 Identities=14% Similarity=0.065 Sum_probs=65.0
Q ss_pred HHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccC--CCCceEEEEeec--CcccccCCCccccc---------C--c
Q 019083 206 FFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR--GQESAYIGCMKS--GDVVTEEGRQWYEP---------E--W 270 (346)
Q Consensus 206 ~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~--~~~~vYiG~~~~--g~vir~~~~Kwyep---------~--~ 270 (346)
.+++.|....+++|++..|||+.+.++.|..++.... +...+..|.+.. ++..-...+.+..+ . +
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 4566666555789999999999999988877776542 233333334431 11000011111100 0 0
Q ss_pred c-cc--------------CCCCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCC
Q 019083 271 W-KF--------------GDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (346)
Q Consensus 271 ~-~f--------------~~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~ 323 (346)
. .| ........|++|++.++.+++.+.+--.... ....||+-++.=+...|
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~~--F~~~ED~Dl~lR~~~~G 403 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLPL--FIKWDDADYGLRAAEHG 403 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCSC--SSSSHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChhH--hccCcHHHHHHHHHHcC
Confidence 0 00 0011234588999999999999987422221 12459999987555443
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=83.52 E-value=31 Score=33.75 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=81.9
Q ss_pred EEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHH
Q 019083 158 VIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGL 237 (346)
Q Consensus 158 ~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~ 237 (346)
.|++|-..|.+ ++ +.+..+.+..+-++. ..+ |.- + -.+...+.+.-..+|++.+|+|+.+.++-|..+
T Consensus 100 EIIvVDDgS~D--~t----~~~~~~~~~~v~vi~-~~~---n~G-~-~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 100 EIILVDDYSND--PE----DGALLGKIEKVRVLR-NDR---REG-L-MRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEECSCSC--TH----HHHGGGGBTTEEEEE-CSS---CCH-H-HHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eEEEEECCCCc--hH----HHHHHhcCCCEEEEE-CCC---CcC-H-HHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 55666544422 22 233334566665552 222 322 2 233444455556899999999999998888777
Q ss_pred hhccCCCCceEEEEee---cCcccc--c------CCCcccccCccc----------c-CC-CCCCCCCCCCCceeeCHHH
Q 019083 238 LDRSRGQESAYIGCMK---SGDVVT--E------EGRQWYEPEWWK----------F-GD-GKSYFRHAAGSIFVLSRNL 294 (346)
Q Consensus 238 L~~~~~~~~vYiG~~~---~g~vir--~------~~~Kwyep~~~~----------f-~~-~~~Yp~y~~G~~YviS~dl 294 (346)
+......+...++... ....+. . ..-.|.....|. . .+ .....+++.|++.++++++
T Consensus 168 l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 247 (501)
T 2ffu_A 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFY 247 (501)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHH
T ss_pred HHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHH
Confidence 7665333332333221 100000 0 000010000000 0 00 1122457889999999999
Q ss_pred HHHHHHhcccCCCCCcChHHHHH--HHhhCCCcEec
Q 019083 295 AQYININSASLKTYAHDDTSVGS--WMMGVRATYKD 328 (346)
Q Consensus 295 a~~I~~~~~~l~~~~~EDV~iG~--wl~~l~v~~vd 328 (346)
...+-.-...+..+..||+-+.. |..|..+..+.
T Consensus 248 ~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 283 (501)
T 2ffu_A 248 FEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIP 283 (501)
T ss_dssp HHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhCCCCccccccCcchHHHHHHHHhcCCeEEEcc
Confidence 99885433444555689998865 44555554443
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=78.98 E-value=39 Score=33.85 Aligned_cols=125 Identities=10% Similarity=0.101 Sum_probs=66.2
Q ss_pred HHHHhhcCCceEEEEecCceeecHHHHHHHhhccCCCC-ceEEEEee-c-Ccc--c----cc------------------
Q 019083 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQE-SAYIGCMK-S-GDV--V----TE------------------ 260 (346)
Q Consensus 208 f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~-~vYiG~~~-~-g~v--i----r~------------------ 260 (346)
...+.+.-+.+|++..|+|..+.++.|..++......+ ...+|... . ... . ..
T Consensus 166 ~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (625)
T 2z86_A 166 RNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAG 245 (625)
T ss_dssp HHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC---------
T ss_pred HHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchhh
Confidence 34444555789999999999999888877776653222 23333221 1 000 0 00
Q ss_pred -----CCCcccccCcc---ccCCCCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHh--hCCCcEecCC
Q 019083 261 -----EGRQWYEPEWW---KFGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMM--GVRATYKDDN 330 (346)
Q Consensus 261 -----~~~Kwyep~~~---~f~~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~--~l~v~~vd~~ 330 (346)
....|....+. .+........++.|++.++++++...+---...+..+..||.-++.=+. |..+.++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~ 325 (625)
T 2z86_A 246 KVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVEGA 325 (625)
T ss_dssp ------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECGGG
T ss_pred hhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcccc
Confidence 00001000000 0000111123578999999999999884333334445589998886554 4434444443
Q ss_pred Cc
Q 019083 331 RF 332 (346)
Q Consensus 331 ~f 332 (346)
..
T Consensus 326 ~v 327 (625)
T 2z86_A 326 MA 327 (625)
T ss_dssp CE
T ss_pred hh
Confidence 33
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=77.73 E-value=33 Score=29.46 Aligned_cols=118 Identities=10% Similarity=0.040 Sum_probs=67.5
Q ss_pred HHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccC--CCCceEEEEee-c--C---cccccCCCcccccCccccCCC
Q 019083 205 KFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR--GQESAYIGCMK-S--G---DVVTEEGRQWYEPEWWKFGDG 276 (346)
Q Consensus 205 l~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~--~~~~vYiG~~~-~--g---~vir~~~~Kwyep~~~~f~~~ 276 (346)
-..+..+.+.-+.+|++..|||.++.++.|...+.... +.-.+..|... . + .++ ..+..|.. .+.
T Consensus 77 ~~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~-~~~-- 149 (255)
T 1qg8_A 77 AALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAA-QVT-- 149 (255)
T ss_dssp HHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCC-SCB--
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchH-HHH--
Confidence 33455566666789999999999999888877766553 33344444332 1 1 111 11112211 111
Q ss_pred CCCCCCCCCCceeeCHHHHHHHH-Hhc----ccCCCCCcChHHHHHHHhhCC-CcEecC
Q 019083 277 KSYFRHAAGSIFVLSRNLAQYIN-INS----ASLKTYAHDDTSVGSWMMGVR-ATYKDD 329 (346)
Q Consensus 277 ~~Yp~y~~G~~YviS~dla~~I~-~~~----~~l~~~~~EDV~iG~wl~~l~-v~~vd~ 329 (346)
.....++.|++.++.+++...+- ... ........||..+..-+...+ +.++++
T Consensus 150 ~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g~~~~~~~ 208 (255)
T 1qg8_A 150 WNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFYPFYPLDE 208 (255)
T ss_dssp SCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTCCBEEEEE
T ss_pred HhhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHHhCCEEEecC
Confidence 12344568899999999999875 220 011224679998876554333 334443
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=70.24 E-value=45 Score=33.42 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=77.6
Q ss_pred CcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHH
Q 019083 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (346)
Q Consensus 156 gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~ 235 (346)
.+.+..|-..|.+ ...+.+.+-.+.+..+.++ . .+ |. . .-..+..+.+.-..+|++..|+|.++.++.|.
T Consensus 404 ~~eiivvdd~S~d---~t~~~~~~~~~~~~~i~~~-~-~~---n~-G-~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~ 473 (625)
T 2z86_A 404 DLEVCICDDGSTD---DTLRILQEHYANHPRVRFI-S-QK---NK-G-IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVE 473 (625)
T ss_dssp SEEEEEEEESCSS---SHHHHHHHHHTTCTTEEEE-E-EC---CC-C-HHHHHHHHHHHCCSSEEEECCTTCEECTTHHH
T ss_pred CeEEEEEECcCCh---hHHHHHHHHHhhCCcEEEE-e-CC---CC-C-HHHHHHHHHHhcCCCEEEEECCCcccChhHHH
Confidence 3566666554432 2233444434455556544 1 21 22 1 22234445555577999999999999998887
Q ss_pred HHhhccC--CCCceEEEEeecCcccccCCCcccccC-ccc-cCCCCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcC
Q 019083 236 GLLDRSR--GQESAYIGCMKSGDVVTEEGRQWYEPE-WWK-FGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHD 311 (346)
Q Consensus 236 ~~L~~~~--~~~~vYiG~~~~g~vir~~~~Kwyep~-~~~-f~~~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~E 311 (346)
..+.... +.-.+..+... ..++.+++.... .|. +........++.|.+.++.+++...+-.-...+ ...|
T Consensus 474 ~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ggfd~~~--~~~e 547 (625)
T 2z86_A 474 LCLDEFRKDLSLACVYTTNR----NIDREGNLISNGYNWPIYSREKLTSAMICHHFRMFTARAWNLTEGFNESI--SNAV 547 (625)
T ss_dssp HHHHHHHHCTTCSEEEEEEE----EECTTSCEEEECCCCSSCCHHHHTTSCCCCSCEEEEHHHHTTTTCCCSSC--SSCH
T ss_pred HHHHHHHhCCCeeEEEeeeE----EECCCCCEeccCcccccCCHHHHhhcccCCceEEEEHHHHHHhCCCCCcc--CChH
Confidence 7776542 22223223211 011111111100 000 000011223456788889998866543222222 2569
Q ss_pred hHHHHHHHhhCC-CcEecC
Q 019083 312 DTSVGSWMMGVR-ATYKDD 329 (346)
Q Consensus 312 DV~iG~wl~~l~-v~~vd~ 329 (346)
|.-+..-+...+ +.++++
T Consensus 548 D~dl~~r~~~~g~~~~~~~ 566 (625)
T 2z86_A 548 DYDMYLKLSEVGPFKHINK 566 (625)
T ss_dssp HHHHHHHHTTTSCEEEEEE
T ss_pred HHHHHHHHHHhCCEEEeCC
Confidence 998876555433 334444
No 9
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=67.84 E-value=55 Score=27.65 Aligned_cols=164 Identities=9% Similarity=0.085 Sum_probs=78.3
Q ss_pred CcEEEEEecccCCCCchhhHHHHHHhhhCCCeEEcCCCcccCCCchHHHHHHHHHHhhcCCceEEEEecCceeecHHHHH
Q 019083 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (346)
Q Consensus 156 gi~vrFViG~s~~~~~~~d~~I~~E~~~~~DIl~l~d~~DsY~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~ 235 (346)
.+.++.|-..|.+ ...+.+++-.+++..+.++. .+ |.- .-.....+.+.-..+|++.+|||.++.++.|.
T Consensus 34 ~~eiIvvDd~S~d---~t~~~~~~~~~~~~~i~~i~--~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~ 103 (240)
T 3bcv_A 34 DIEIILIDDESPD---NCPKICDDYAAQYPNIKVIH--KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYM 103 (240)
T ss_dssp SEEEEEEECCCSS---SHHHHHHHHHHHCSSEEEEE--CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHH
T ss_pred CeEEEEEECCCCc---CHHHHHHHHHhhCCCEEEEE--CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHH
Confidence 4566666544432 22334444445566666552 22 221 22334445555577999999999999988887
Q ss_pred HHhhccCC-CCceEEEEe-e---cCc---cccc--CCCcccccCc----c-c-cCCCCCCC----CCCCCCceeeCHHHH
Q 019083 236 GLLDRSRG-QESAYIGCM-K---SGD---VVTE--EGRQWYEPEW----W-K-FGDGKSYF----RHAAGSIFVLSRNLA 295 (346)
Q Consensus 236 ~~L~~~~~-~~~vYiG~~-~---~g~---vir~--~~~Kwyep~~----~-~-f~~~~~Yp----~y~~G~~YviS~dla 295 (346)
..+..... ...+.+|.. . .+. .+.. ....++.... . . +.....+. ...+|++.++.+++.
T Consensus 104 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 183 (240)
T 3bcv_A 104 TMYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLI 183 (240)
T ss_dssp HHHHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHH
T ss_pred HHHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhhcchhhccccccccchhheeeeHHHH
Confidence 77665532 334443322 1 111 0100 0001111000 0 0 00000000 013578889999999
Q ss_pred HHHH-HhcccCCCCCcChHHHHHHHh--hCCCcEecCC
Q 019083 296 QYIN-INSASLKTYAHDDTSVGSWMM--GVRATYKDDN 330 (346)
Q Consensus 296 ~~I~-~~~~~l~~~~~EDV~iG~wl~--~l~v~~vd~~ 330 (346)
..+- .-...+ .+..||..+..-+. |..+..+++.
T Consensus 184 ~~~g~~f~~~~-~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 184 EKKHLRFVSER-ILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHTTCCCCCTT-TCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHcCCccCCCC-CccCCCHHHHHHHHHhCCEEEEECCC
Confidence 8853 111111 23469998886554 4445555554
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=58.32 E-value=74 Score=33.48 Aligned_cols=130 Identities=15% Similarity=-0.050 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEecCceeecHHHHHHHhhccC--CCCceEEEEee-cC-cccccCCCccc-cc-CccccC
Q 019083 201 PKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR--GQESAYIGCMK-SG-DVVTEEGRQWY-EP-EWWKFG 274 (346)
Q Consensus 201 t~Ktl~~f~wa~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~--~~~~vYiG~~~-~g-~vir~~~~Kwy-ep-~~~~f~ 274 (346)
..|.- .+..+.+.-+.+|++.+|+|+.+.++.|...+.... ++-.+..|... .+ .+.......+. .+ +...++
T Consensus 224 ~GKa~-alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (802)
T 4hg6_A 224 HAKAG-NMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFY 302 (802)
T ss_dssp SHHHH-HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHH
T ss_pred CcchH-HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHH
Confidence 44554 345566666889999999999999998888777652 22222222111 01 11000000000 00 000000
Q ss_pred C------CCCCCCCCCCCceeeCHHHHHHHHHhcccCCCCCcChHHHHHHHhhCC--CcEecCCCccc
Q 019083 275 D------GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR--ATYKDDNRFCC 334 (346)
Q Consensus 275 ~------~~~Yp~y~~G~~YviS~dla~~I~~~~~~l~~~~~EDV~iG~wl~~l~--v~~vd~~~fc~ 334 (346)
. ...-.+++.|++.++.+++.+.+-.-. ...-.||..++.-+...+ +..+++.....
T Consensus 303 ~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~---~~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~ 367 (802)
T 4hg6_A 303 GKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFA---GETITEDAETALEIHSRGWKSLYIDRAMIAG 367 (802)
T ss_dssp HTHHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCC---CSSSSHHHHHHHHHHTTTCCEEECCCCCEEE
T ss_pred HHHHhhHhhcCCceecccchhhhHHHHHHcCCcC---CCCcchHHHHHHHHHHcCCeEEEecCCEEEe
Confidence 0 000113467999999999999873211 122359999998776554 44555544433
No 11
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=39.20 E-value=1.3e+02 Score=27.36 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=51.9
Q ss_pred HhhcCCceEEEEecCceeecHHHHHHHhhccCCCCceEEEEeecCcccccCCCcccccCccccCCCCCCCCCCCCCceee
Q 019083 211 AVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVL 290 (346)
Q Consensus 211 a~~~~~a~f~lKvDDDvfVn~~~L~~~L~~~~~~~~vYiG~~~~g~vir~~~~Kwyep~~~~f~~~~~Yp~y~~G~~Yvi 290 (346)
+.+.-+.+|++.+|+|+.+..+.+. ......+.. +. +.... +.-...| ..+.|+..++
T Consensus 124 al~~A~gd~i~flD~D~i~~~d~~~---~~~~~~p~~----~~-----------~~~~~---~~~~~~~-~~~~G~~~~~ 181 (287)
T 2fy7_A 124 ALKDYDYTCFVFSDVDLIPMNDHNA---YRCFSQPRH----IS-----------VAMDK---FGFSLPY-VQYFGGVSAL 181 (287)
T ss_dssp HHHHSCCCEEEEECTTEEESBTTSC---CSCCSSCEE----CC-----------CEEGG---GTTSCSS-TTCCCSEEEE
T ss_pred HHHhCCCCEEEEECCCcccCCCcce---EecCCCCce----EE-----------Eeecc---cccCCCc-CceeeeEEEE
Confidence 3355678999999999999888521 000001110 00 00000 0000112 2456899999
Q ss_pred CHHHHHHHHHhcccCCCCCcChHHHHHHH--hhCCCc
Q 019083 291 SRNLAQYININSASLKTYAHDDTSVGSWM--MGVRAT 325 (346)
Q Consensus 291 S~dla~~I~~~~~~l~~~~~EDV~iG~wl--~~l~v~ 325 (346)
.+++...+---...+..+..||+-++.=+ .|+.+.
T Consensus 182 rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~ 218 (287)
T 2fy7_A 182 SKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSIS 218 (287)
T ss_dssp EHHHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCB
T ss_pred EHHHHHHcCCCCccccccccchHHHHHHHHHcCCeEE
Confidence 99998887533344445567999887644 455454
No 12
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=35.22 E-value=76 Score=30.70 Aligned_cols=167 Identities=11% Similarity=-0.034 Sum_probs=83.5
Q ss_pred CcEEEEEecccCCCCchhhHHHHHHhh-hCCC-eEEcCCCc-cc--CCCchHHHHHHHHHHhhcCCceEEEEecCce-ee
Q 019083 156 GVVIRFVIGRSANRGDSLDRKIDAENR-ETKD-FLILEGHE-EA--QEELPKKAKFFFSTAVQIWDAEFYVKVDDNI-DL 229 (346)
Q Consensus 156 gi~vrFViG~s~~~~~~~d~~I~~E~~-~~~D-Il~l~d~~-Ds--Y~nLt~Ktl~~f~wa~~~~~a~f~lKvDDDv-fV 229 (346)
...+++|=+.|.+...++-+.+..+.. .++. ++.+. .. .. -.....=...+|+||...-+.++++.+|-|. ..
T Consensus 28 ~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~-~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~ 106 (397)
T 2bo4_A 28 RVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRL-QERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSF 106 (397)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEE-CCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSC
T ss_pred CeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEe-cccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCC
Confidence 357888887775432222222222333 3444 33221 11 01 1233444677888887445789999999999 47
Q ss_pred cHHHHHHHhhccCCCCceEEEEeec---CcccccCCCcccccCccccCC--CCCCCCCCCCCceeeCHHHHHHHHHhc--
Q 019083 230 DLEGLIGLLDRSRGQESAYIGCMKS---GDVVTEEGRQWYEPEWWKFGD--GKSYFRHAAGSIFVLSRNLAQYININS-- 302 (346)
Q Consensus 230 n~~~L~~~L~~~~~~~~vYiG~~~~---g~vir~~~~Kwyep~~~~f~~--~~~Yp~y~~G~~YviS~dla~~I~~~~-- 302 (346)
++.-+.+++......-.+.+|.... +..+.....++.... +++ .....+...++.++++++++..+....
T Consensus 107 ~P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~---~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~ 183 (397)
T 2bo4_A 107 GPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFAL---LWPHTELSWIEQPLGGELLMRREVAAMLYEDERV 183 (397)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHH---HCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHH---HHHHhhccccccCCcccEEEeHHHHHHHhhhccc
Confidence 8877777766543334566675321 111111111110000 111 001223335778899999999885321
Q ss_pred ccCCCCCcChHHHHHHH--hhCCCcEe
Q 019083 303 ASLKTYAHDDTSVGSWM--MGVRATYK 327 (346)
Q Consensus 303 ~~l~~~~~EDV~iG~wl--~~l~v~~v 327 (346)
.....|.. |+.+-..+ .|+.|..+
T Consensus 184 ~~~~~fg~-eiel~~~a~~~G~rI~EV 209 (397)
T 2bo4_A 184 RRRSDWGI-DTLYTFVTVQQGVSIYEC 209 (397)
T ss_dssp HTCCSTTH-HHHHHHHHHHTTCCEEEE
T ss_pred CcCCCcch-HHHHHHHHHHcCCEEEEE
Confidence 12334443 66554433 35555433
No 13
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.59 E-value=25 Score=26.98 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=46.3
Q ss_pred EEcCCCCHHHHHHHHHHhccCCcchhhhhcCCcEEEEEecccCCCCchhhHHHHHHhhhCC---CeEEcCCCcccCCCch
Q 019083 125 VYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETK---DFLILEGHEEAQEELP 201 (346)
Q Consensus 125 I~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~gi~vrFViG~s~~~~~~~d~~I~~E~~~~~---DIl~l~d~~DsY~nLt 201 (346)
|.|+.++.+-|+.|...=-+- .-.++||-|.+.+... +.+.|+++-+ |++-- . ..++|+
T Consensus 31 irtatssqdirdiiksmkdng----------kplvvfvngasqndvn----efqneakkegvsydvlks---t-dpeelt 92 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMKDNG----------KPLVVFVNGASQNDVN----EFQNEAKKEGVSYDVLKS---T-DPEELT 92 (112)
T ss_dssp EEEECSHHHHHHHHHHHTTCC----------SCEEEEECSCCHHHHH----HHHHHHHHHTCEEEEEEC---C-CHHHHH
T ss_pred eeeccchhhHHHHHHHHHhcC----------CeEEEEecCcccccHH----HHHHHHHhcCcchhhhcc---C-CHHHHH
Confidence 677888899999887643222 2357899998765322 3455555443 55532 2 235789
Q ss_pred HHHHHHHHHHhhc
Q 019083 202 KKAKFFFSTAVQI 214 (346)
Q Consensus 202 ~Ktl~~f~wa~~~ 214 (346)
..+..+++.+-..
T Consensus 93 qrvreflktagsl 105 (112)
T 2lnd_A 93 QRVREFLKTAGSL 105 (112)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHhcccc
Confidence 9999999887553
No 14
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=24.53 E-value=55 Score=20.07 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=19.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhcc
Q 019083 22 HTSKPSVVLAFFSCLAWLYVAGR 44 (346)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~ 44 (346)
++--|+.++.+|+|-+.+.|-||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 45568999999999999999887
No 15
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=23.83 E-value=57 Score=20.31 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHHHHHHHhcc
Q 019083 23 TSKPSVVLAFFSCLAWLYVAGR 44 (346)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~ 44 (346)
+--|+.++.+|+|-+.+.|-||
T Consensus 7 sl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHhheeeEEEEEec
Confidence 3458999999999999999887
Done!