Query 019084
Match_columns 346
No_of_seqs 193 out of 1436
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1440 CDP-diacylglycerol syn 100.0 5.4E-62 1.2E-66 466.7 22.1 338 5-346 18-366 (432)
2 PLN02594 phosphatidate cytidyl 100.0 2.6E-58 5.6E-63 438.8 27.9 265 82-346 2-270 (342)
3 PRK11624 cdsA CDP-diglyceride 100.0 1.1E-42 2.3E-47 330.1 29.2 240 46-346 1-252 (285)
4 PLN02953 phosphatidate cytidyl 100.0 3.1E-42 6.8E-47 331.8 27.5 241 38-346 89-368 (403)
5 COG4589 Predicted CDP-diglycer 100.0 3.7E-37 8.1E-42 277.7 25.8 232 42-346 31-272 (303)
6 COG0575 CdsA CDP-diglyceride s 100.0 3.6E-36 7.8E-41 283.3 28.2 230 46-346 1-235 (265)
7 PF01148 CTP_transf_1: Cytidyl 100.0 1.2E-33 2.7E-38 263.0 25.4 228 48-346 1-230 (259)
8 PRK04032 hypothetical protein; 99.9 4.4E-22 9.5E-27 171.8 8.4 78 224-344 22-100 (159)
9 PF01864 DUF46: Putative integ 98.6 5.9E-08 1.3E-12 85.8 6.5 74 236-344 44-117 (175)
10 KOG4453 Predicted ER membrane 98.0 1.8E-05 3.9E-10 71.8 6.8 55 208-264 160-214 (269)
11 COG0170 SEC59 Dolichol kinase 97.3 0.0011 2.4E-08 60.9 8.8 48 212-260 121-168 (216)
12 KOG2468 Dolichol kinase [Lipid 94.8 0.028 6E-07 56.3 3.9 46 213-260 418-463 (510)
13 TIGR00994 3a0901s05TIC20 chlor 86.3 2 4.4E-05 40.3 6.3 57 4-61 73-129 (267)
14 PF01940 DUF92: Integral membr 72.8 30 0.00064 32.1 9.3 51 211-261 113-172 (226)
15 TIGR00297 conserved hypothetic 65.9 46 0.001 31.1 9.0 47 212-258 119-174 (237)
16 KOG1440 CDP-diacylglycerol syn 48.6 1.7E+02 0.0038 29.5 10.2 45 208-252 271-315 (432)
17 PRK10847 hypothetical protein; 48.1 13 0.00028 34.0 2.2 24 210-233 78-101 (219)
18 PF10766 DUF2592: Protein of u 47.8 72 0.0016 21.3 5.0 35 49-95 3-37 (41)
19 TIGR01594 holin_lambda phage h 41.5 36 0.00078 27.8 3.6 30 314-343 76-107 (107)
20 PF11283 DUF3084: Protein of u 40.0 27 0.00059 26.9 2.5 26 216-241 12-42 (79)
21 PF09335 SNARE_assoc: SNARE as 35.1 21 0.00046 28.6 1.3 24 211-234 24-47 (123)
22 COG0586 DedA Uncharacterized m 32.3 22 0.00048 32.2 1.1 24 211-234 64-87 (208)
23 TIGR01597 PYST-B Plasmodium yo 31.5 2.7E+02 0.0058 26.1 7.8 31 46-76 196-226 (255)
24 PF02046 COX6A: Cytochrome c o 27.9 71 0.0015 26.5 3.3 14 50-63 46-59 (116)
25 PLN02777 photosystem I P subun 27.2 67 0.0014 28.3 3.1 35 20-54 63-97 (167)
26 COG5336 Uncharacterized protei 24.7 1.7E+02 0.0038 24.0 4.8 27 236-262 43-69 (116)
27 KOG4753 Predicted membrane pro 24.1 1.5E+02 0.0032 24.8 4.4 13 1-13 1-13 (124)
28 PF10031 DUF2273: Small integr 21.8 2.7E+02 0.0059 19.5 4.9 29 42-70 2-30 (51)
29 COG2991 Uncharacterized protei 21.0 72 0.0016 24.2 1.8 11 240-250 27-37 (77)
30 COG4944 Uncharacterized protei 20.8 1.8E+02 0.0039 26.3 4.6 23 239-261 156-178 (213)
31 PHA02898 virion envelope prote 20.6 4.3E+02 0.0094 20.9 6.3 26 315-340 48-73 (92)
No 1
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=100.00 E-value=5.4e-62 Score=466.67 Aligned_cols=338 Identities=50% Similarity=0.944 Sum_probs=304.4
Q ss_pred CCCCCCCch--hhhccc----cCCCCCcchhccCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 019084 5 NNTSAPTTP--RLRHRR----RSNEAIPDATKANGSHLLVHDRNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVV 78 (346)
Q Consensus 5 ~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Riis~lvli~~~~~~i~~G~~~~~~lv~~ 78 (346)
|++.+++++ ++++++ +++|..++..........++++++++|+.+|.+++++|+..+..+++.|+.+...++..
T Consensus 18 ~~~~~~s~~~~~l~~~~~~~~~~~~~s~~~~p~~~~~~l~~~~~~~~n~~~R~i~t~~mi~~f~~i~~~g~~~~~~lv~~ 97 (432)
T KOG1440|consen 18 NATESESTPSGELQLRDRTRKIRPPVSKDRTPVRLKPLLSALRSRWKNFFRRGILTLAMISGFFLIIYMGHKYLMALVLV 97 (432)
T ss_pred cCCCCCCCcccccchhhcccccCCCCCCCCCcccchhhhhhCCCCceeeehHHHHHHHHHhccEEEEecCcchhhhhhhh
Confidence 344445544 666666 44444444444444556677788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019084 79 IQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYIS 158 (346)
Q Consensus 79 i~~~~~~E~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 158 (346)
+++.+..|.+++.++..+++..|+++.+.|+++.+..+++|+..+..++..+...+..+.. +..+|..+++.+|+.
T Consensus 98 iQi~~~~Eii~i~~~~~~~k~lp~f~~l~w~fl~t~~yf~yg~~~~~yf~~v~~~~~~l~~----LV~yh~fi~f~lYi~ 173 (432)
T KOG1440|consen 98 IQIKCFKEIIAIGRKVSREKDLPWFRLLNWYFLLTVNYFVYGEILVAYFAAVFIRDRFLFF----LVRYHRFICFALYLI 173 (432)
T ss_pred HHHHHHHHHHHHhhccccccCCceeehhhhHHHHHHHHHHhHHHHHHHHHHHHhhhHHHHH----HHHhcccccHHHHHH
Confidence 9999999999999998888899999999999999999999999888888777766655433 456899999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHhhhhchhHHHHHHHHHHHHhhHHHHHHhhhcCCCcccccCC
Q 019084 159 GFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSP 238 (346)
Q Consensus 159 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~~~~l~~~~~vw~~Dt~AYf~Gr~fGk~kL~~ISP 238 (346)
++++++++|+++.++.|++..+|+++.++.++.++++.+.+++.|.+|+++++.++.+||++||.+|..|||+||+++||
T Consensus 174 gf~~FV~sL~k~~yk~QFg~fawtH~sll~Vv~qs~l~i~N~feG~fWFl~P~~lvicnDi~AY~~Gf~fGktPLiklSP 253 (432)
T KOG1440|consen 174 GFVSFVLSLRKGIYKLQFGLFAWTHMSLLLVVTQSHLVIQNLFEGLFWFLVPAGLVICNDIFAYLFGFFFGKTPLIKLSP 253 (432)
T ss_pred HHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhHhheeCchHHHHHhhhhcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhhccccCCcccCcCC-cccCCCCCCCCCCCCCCCCC----CCccccccchhHHH
Q 019084 239 KKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATG-WLHCDPGPLFKPESFPLPGW----LPWKEITILPVQWH 313 (346)
Q Consensus 239 kKTwEG~iGG~l~~~l~~~l~~~~l~~~~~~~~p~~~~~~~-~~~c~~~~~f~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (346)
||||||+|||.+++++.+.++++.+.+++|++||..+.+++ +++||+++.|.++.|.+|++ .+++++++.|.++|
T Consensus 254 KKTwEGFiGg~~~tvv~~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp~~i~~~i~~k~is~~p~~~H 333 (432)
T KOG1440|consen 254 KKTWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLPGVISITIRLKSISLPPFQFH 333 (432)
T ss_pred CCccchhhchhHHHHHHHHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCCceeeeeccccccccchHHHH
Confidence 99999999999999999999999999999999999999986 89999999999999999988 46678899999999
Q ss_pred HHHHHHHHHHhhchhhHHHHHHhhcCCCCCCCC
Q 019084 314 ALCLGLFASIIAPFGGFFASGFKRAFKIKVQSQ 346 (346)
Q Consensus 314 ~i~l~li~si~~~~GDL~eS~lKR~~gVKDsG~ 346 (346)
.+.+|++.+++|++||++||++||+++|||||+
T Consensus 334 sial~~faS~iaPFGGFfASgfKRafKiKDFG~ 366 (432)
T KOG1440|consen 334 SIALGLFASFIAPFGGFFASGFKRAFKIKDFGD 366 (432)
T ss_pred HHHHHHHHHhhccchhHHHHHhHHhhcCCcccc
Confidence 999999999999999999999999999999996
No 2
>PLN02594 phosphatidate cytidylyltransferase
Probab=100.00 E-value=2.6e-58 Score=438.79 Aligned_cols=265 Identities=85% Similarity=1.504 Sum_probs=242.9
Q ss_pred HHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019084 82 FMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFV 161 (346)
Q Consensus 82 ~~~~E~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 161 (346)
.+++|..++.+..++++++|+.+.++||+++++++++|++.+..++......++.+..+.+...++|..+++++|+.+++
T Consensus 2 ~~f~Eii~i~~~~~~~~~lp~~~~l~Wyf~~~~~~~~yg~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~isf~ly~~gfv 81 (342)
T PLN02594 2 LMARELFNLARKAREERQLPGFRLLNWHFFFTAMFFVYGRFLKQQLVNTVTSDKFLYRLVSGLIKYHMAICYSLYIAGFV 81 (342)
T ss_pred hhhHHHHHHhhhhhhhhCCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999888777777777766666666789999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHhhhhchhHHHHHHHHHHHHhhHHHHHHhhhcCCCcccccCCCCc
Q 019084 162 WFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKT 241 (346)
Q Consensus 162 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~~~~l~~~~~vw~~Dt~AYf~Gr~fGk~kL~~ISPkKT 241 (346)
+++++++++++++++.+.+|++++++++..++++.+.++.+|..|+++++.+||+||++||++||.||||||+++|||||
T Consensus 82 ~FvlsL~k~~~k~qf~~~a~t~~~llyV~~~~~~ii~ni~~G~~w~~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKT 161 (342)
T PLN02594 82 WFILTLKKGMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKT 161 (342)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCc
Confidence 99999999999999999999999999988888888778889999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhccccCCcccCcCCcccCCCCCCCCCCCCCCCCCC----CccccccchhHHHHHHH
Q 019084 242 WEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWL----PWKEITILPVQWHALCL 317 (346)
Q Consensus 242 wEG~iGG~l~~~l~~~l~~~~l~~~~~~~~p~~~~~~~~~~c~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~~~i~l 317 (346)
|||++||+++|++++.+++.++.++.|++||++++++++++||+++.|.++.+++|.+. +..+++..|.++|++++
T Consensus 162 wEGfiGg~i~T~i~~~~~~~~~~~~~~~~cp~~~~~~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~~i~~~~~~~h~l~l 241 (342)
T PLN02594 162 WEGFIGASVTTLISAFYLANIMGKFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSL 241 (342)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccccCCccccccCcccCCCccccccccccCCccccccccccccccchHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999999999998652 22344555667999999
Q ss_pred HHHHHHhhchhhHHHHHHhhcCCCCCCCC
Q 019084 318 GLFASIIAPFGGFFASGFKRAFKIKVQSQ 346 (346)
Q Consensus 318 ~li~si~~~~GDL~eS~lKR~~gVKDsG~ 346 (346)
|+++|++||+|||+||++||++||||||+
T Consensus 242 ~l~aSl~a~fGdlfaS~~KR~~~IKDfG~ 270 (342)
T PLN02594 242 GLFASIIAPFGGFFASGFKRAFKIKDFGD 270 (342)
T ss_pred HHHHHHHHHhhhHHHHHHHHccCCCcccC
Confidence 99999999999999999999999999996
No 3
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=100.00 E-value=1.1e-42 Score=330.08 Aligned_cols=240 Identities=20% Similarity=0.289 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 019084 46 SFLVRAYSTVWMIAGFVLIVYM-GHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILS 124 (346)
Q Consensus 46 ~l~~Riis~lvli~~~~~~i~~-G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 124 (346)
++++|++|+++++|+++.+++. |++.+..+++++++++.|||++|.+.++...+ +. ....................
T Consensus 1 ml~~Riita~vlv~l~l~~i~~~~~~~f~~l~~~~~~l~~~E~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~- 77 (285)
T PRK11624 1 MLKYRLITAFILIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFASRSQR-VW-LAVLCGLLLALMLFLLPEYH- 77 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccchh-HH-HHHHHHHHHHHHHHHHHHhh-
Confidence 4789999999999999988876 66889999999999999999999865432111 11 01000000000000000000
Q ss_pred HHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhHHHHHHHHHH-HHHhHHHH-Hhhh
Q 019084 125 QRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYK--YQFSQYAWTHMILIV-VFAQSSFT-VASI 200 (346)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~-i~~~ 200 (346)
... +. . ..........+..... ..+ ..+..+.. ........+.++.+| ......+. ++..
T Consensus 78 ----~~~--~~---~----~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 141 (285)
T PRK11624 78 ----HNI--HQ---P----LVEISLWASLGWWIVA-LLL--VLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAW 141 (285)
T ss_pred ----hhh--hH---H----HHHHHHHHHHHHHHHH-HHH--HHHccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 000 00 0 0000000000000111 111 11111110 011112223333333 22222222 3321
Q ss_pred ------hchhHHHHHHHHHHHHhhHHHHHHhhhcCCCccc-ccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhccccCCc
Q 019084 201 ------FEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPR 273 (346)
Q Consensus 201 ------~~G~~~~l~~~~~vw~~Dt~AYf~Gr~fGk~kL~-~ISPkKTwEG~iGG~l~~~l~~~l~~~~l~~~~~~~~p~ 273 (346)
++|..|+++++++||+|||+|||+||.||||||+ +|||||||||++||++++++++.+++++.. .+
T Consensus 142 ~~~~~~~~G~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~-~~------ 214 (285)
T PRK11624 142 HYDENHYSGAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAP-LD------ 214 (285)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHc-cc------
Confidence 1478888999999999999999999999999999 699999999999999999999988875431 00
Q ss_pred ccCcCCcccCCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCCCC
Q 019084 274 KDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKVQSQ 346 (346)
Q Consensus 274 ~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~l~li~si~~~~GDL~eS~lKR~~gVKDsG~ 346 (346)
. ..++.++++++++++||+|||+||++||++||||||+
T Consensus 215 -------------------------------~----~~~~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKDSG~ 252 (285)
T PRK11624 215 -------------------------------V----APVTLLICSIVAALASVLGDLTESMFKREAGIKDSGH 252 (285)
T ss_pred -------------------------------c----cHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCCCcC
Confidence 0 1256788999999999999999999999999999996
No 4
>PLN02953 phosphatidate cytidylyltransferase
Probab=100.00 E-value=3.1e-42 Score=331.77 Aligned_cols=241 Identities=21% Similarity=0.286 Sum_probs=165.8
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hhhHHHHHHHHH-HHH
Q 019084 38 VHDRNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERDL-PGFRMLNWHFFF-TAM 115 (346)
Q Consensus 38 ~~~~~~~~~l~~Riis~lvli~~~~~~i~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~-~~~~~l~~~~~~-~~~ 115 (346)
+++.+|.+|+++|++|+++++++.+.+++.|+|+|.++++++..++.+||++|.+.++..+.. +.........++ ...
T Consensus 89 ~~~~~~~~~l~~RIiSglvl~~l~l~vV~~GGw~F~~~va~iv~lg~~E~frmv~~~gi~p~~~~~~~~~~~~g~v~~~~ 168 (403)
T PLN02953 89 EDKQKKASQLKKRVIFGIGIGLPVGCVVLAGGWFFTVALAASVFIGSREYFELVRSRGIAKGMTPPPRYVSRVCSVICAL 168 (403)
T ss_pred cccccccccHHHHHHHHHHHHHHHHheeeeCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHH
Confidence 456667889999999999999999999999999999999999999999999998765542111 111110000000 000
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH-HHhHH
Q 019084 116 LFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVV-FAQSS 194 (346)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 194 (346)
+.+... . ... ....+.+.....+ ++...+++ +..+.+.+.+.+++.|+ +.+++
T Consensus 169 ~~v~~~-~---------------------~g~-~~~~l~l~~~~i~-~~ll~~~~--~~~~~di~~s~fgl~Yig~lpsf 222 (403)
T PLN02953 169 MPILTL-Y---------------------FGN-IDILVTSAAFLVA-IALLVQRG--SPRFAQLSSTMFGLFYCGYLPCF 222 (403)
T ss_pred HHHHHH-H---------------------HhH-HHHHHHHHHHHHH-HHHHhcCC--cccHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 000 0000000111111 11222222 12456667777765544 45555
Q ss_pred HH-Hhh-----------------------------------hhchhHHHHHHHHHHHHhhHHHHHHhhhcCCCcccccCC
Q 019084 195 FT-VAS-----------------------------------IFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSP 238 (346)
Q Consensus 195 ~~-i~~-----------------------------------~~~G~~~~l~~~~~vw~~Dt~AYf~Gr~fGk~kL~~ISP 238 (346)
++ ++. .+.|..+++++++++|+||++||++||.|||||+.+|||
T Consensus 223 ~v~Lr~~~~~~~~~~~~~~~f~~l~~~~~~~~p~~~~~~~~~~~Gl~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~~ISP 302 (403)
T PLN02953 223 WVKLRCGLAAPALNTGKLSPFISLKFSIGKTWPILLGGQAHWTVGLVATLISFSGVIATDTFAFLGGKAFGRTPLTSISP 302 (403)
T ss_pred HHHHhhccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCC
Confidence 54 331 134788888899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhhccccCCcccCcCCcccCCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHH
Q 019084 239 KKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLG 318 (346)
Q Consensus 239 kKTwEG~iGG~l~~~l~~~l~~~~l~~~~~~~~p~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~l~ 318 (346)
||||||++||++++++++.+++.++. | | ..+++.++++
T Consensus 303 kKTwEG~iGGil~~vlv~~l~~~~l~---~---~------------------------------------~~~~~~i~lg 340 (403)
T PLN02953 303 KKTWEGTFVGLVGCIAITILLSKSLS---W---P------------------------------------QSLFSSIAFG 340 (403)
T ss_pred CCeeeeehhHHHHHHHHHHHHHHHHc---c---c------------------------------------hHHHHHHHHH
Confidence 99999999999999999988876542 1 0 0136789999
Q ss_pred HHHHHhhchhhHHHHHHhhcCCCCCCCC
Q 019084 319 LFASIIAPFGGFFASGFKRAFKIKVQSQ 346 (346)
Q Consensus 319 li~si~~~~GDL~eS~lKR~~gVKDsG~ 346 (346)
+++++.||+|||+||++||++||||||+
T Consensus 341 ~li~~~~~~GDL~eS~iKR~~gVKDsG~ 368 (403)
T PLN02953 341 FLNFFGSVFGDLTESMIKRDAGVKDSGS 368 (403)
T ss_pred HHHHHHHHhhHHHHHHHhHccCCCCccc
Confidence 9999999999999999999999999996
No 5
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=100.00 E-value=3.7e-37 Score=277.72 Aligned_cols=232 Identities=23% Similarity=0.385 Sum_probs=162.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHH
Q 019084 42 NKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGR 121 (346)
Q Consensus 42 ~~~~~l~~Riis~lvli~~~~~~i~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 121 (346)
++.-|+..|+-++++|+.++..++..|.++...++.++++.+++||.++...+..++ .+.. |. |..
T Consensus 31 ~~~~~l~~RI~aWW~mv~i~~~~~~l~~~~~l~lF~~iSflalrEfltl~ptr~~d~-~~l~----~~---------Y~~ 96 (303)
T COG4589 31 RKIDELNLRIRAWWVMVIIFSLVISLPRWMTLTLFGLISFLALREFLTLIPTRRPDH-LALV----WF---------YWV 96 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCc-cchh----hh---------hhh
Confidence 468899999999999999999999999999999999999999999999999876554 2221 11 111
Q ss_pred HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhhhhhhhhhHHHHHHHHHHHHHhHHH--H
Q 019084 122 ILSQRLVNTVTSDKFLYQFVSSLIKYHMVICY-FLYISGFVWFILTL--KKKMYKYQFSQYAWTHMILIVVFAQSSF--T 196 (346)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 196 (346)
...++.. -.+..+.+++.+ -+|...+++....+ +.+++-...+...|..+... +..+|. .
T Consensus 97 lplqy~~-------------i~i~wy~mf~ifipvY~fL~Lp~l~~L~gdt~gFl~~~s~i~wg~mltv--fcish~~~l 161 (303)
T COG4589 97 LPLQYLL-------------IGIDWYEMFIIFIPVYGFLILPILMVLVGDTSGFLHRVSAIQWGWMLTV--FCISHAAYL 161 (303)
T ss_pred hhHhHHH-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhHHHHHHHHHHH--HHHHhhHHH
Confidence 1111110 011122222211 13333223222223 22333333444555554332 233333 2
Q ss_pred H----hhhhchhHHHHHHHHHHHHhhHHHHHHhhhcCCCccc-ccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 019084 197 V----ASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTC 271 (346)
Q Consensus 197 i----~~~~~G~~~~l~~~~~vw~~Dt~AYf~Gr~fGk~kL~-~ISPkKTwEG~iGG~l~~~l~~~l~~~~l~~~~~~~~ 271 (346)
+ .+...|...+++.++++..||+.+|..||.|||||.. ++||||||||++||++.+++++.+++ ++++++
T Consensus 162 ltL~~~~~~~~~ll~iflli~~q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~-~lTp~~---- 236 (303)
T COG4589 162 LTLDITNFQGGALLVIFLLILTELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILG-LLTPLN---- 236 (303)
T ss_pred hhCCCCCcCccchHHHHHHHHHHHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHH-HhCCCc----
Confidence 1 1233444567778889999999999999999999999 69999999999999999999999887 443221
Q ss_pred CcccCcCCcccCCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCCCC
Q 019084 272 PRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKVQSQ 346 (346)
Q Consensus 272 p~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~l~li~si~~~~GDL~eS~lKR~~gVKDsG~ 346 (346)
.+|+++.|+++++.|.+||++.|++||+.||||+||
T Consensus 237 ---------------------------------------~lqa~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~ 272 (303)
T COG4589 237 ---------------------------------------TLQALLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGK 272 (303)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccc
Confidence 378999999999999999999999999999999996
No 6
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=100.00 E-value=3.6e-36 Score=283.33 Aligned_cols=230 Identities=26% Similarity=0.399 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 019084 46 SFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQ 125 (346)
Q Consensus 46 ~l~~Riis~lvli~~~~~~i~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 125 (346)
++++|++++.++++.++..++.+++++.+++.++++.+.+|++++.+.+....+........+.. .+.......
T Consensus 1 ~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~- 74 (265)
T COG0575 1 MLKQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGL-----VLLDGRRLL- 74 (265)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH-----HHHHHHHHh-
Confidence 57899999999998888877778899999999999999999999988754332111111110000 000000000
Q ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH-HHHHHHhHHH-HHh-hh-h
Q 019084 126 RLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMI-LIVVFAQSSF-TVA-SI-F 201 (346)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~i~-~~-~ 201 (346)
.+ .+.........+... ...... .+...+..+.... .++......+ ..+ .. +
T Consensus 75 -------~~----------~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T COG0575 75 -------GD----------GKETLLGFLLGFLLG-----LVLLGV--IYYLSDSLFKLFGLLYVGVGLLALLPFRLGVLY 130 (265)
T ss_pred -------hh----------HHHHHHHHHHHHHHH-----HHHHHh--hhhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 00 000000000000000 000000 0111111121121 2222222211 111 11 5
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHhhhcCCCccc-ccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhccccCCcccCcCCc
Q 019084 202 EGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGW 280 (346)
Q Consensus 202 ~G~~~~l~~~~~vw~~Dt~AYf~Gr~fGk~kL~-~ISPkKTwEG~iGG~l~~~l~~~l~~~~l~~~~~~~~p~~~~~~~~ 280 (346)
+|..|.++++++||+||++|||+||.|||||++ ++||||||||++||++++.+++.......+..
T Consensus 131 ~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~-------------- 196 (265)
T COG0575 131 SGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSL-------------- 196 (265)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhh--------------
Confidence 789999999999999999999999999999999 69999999999999999999988876653200
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCCCC
Q 019084 281 LHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKVQSQ 346 (346)
Q Consensus 281 ~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~l~li~si~~~~GDL~eS~lKR~~gVKDsG~ 346 (346)
...+++.+++++++++++|+|||+||++||++||||||+
T Consensus 197 ---------------------------~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~~gvKDsg~ 235 (265)
T COG0575 197 ---------------------------ILNIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKDSGW 235 (265)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCcCC
Confidence 012478899999999999999999999999999999986
No 7
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=100.00 E-value=1.2e-33 Score=262.96 Aligned_cols=228 Identities=30% Similarity=0.467 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019084 48 LVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQRL 127 (346)
Q Consensus 48 ~~Riis~lvli~~~~~~i~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 127 (346)
|+|++|+++++++++..++.|++++..++.+++..+.+|+.++.+...++...+......+.+........+.....
T Consensus 1 k~Ri~t~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (259)
T PF01148_consen 1 KQRIITAIILIPIFILLLFLGPWYFLLLVAVIIFLGFWELFRLFRIKSRSKFRLIIRILSWIFFLILFLFFYLRWLI--- 77 (259)
T ss_pred CEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHhhhhHHH---
Confidence 58999999999999999999999999999999999999999998877654433222112222222111111110000
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhH-HHHHhhhhchhHH
Q 019084 128 VNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQS-SFTVASIFEGIFW 206 (346)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~~~ 206 (346)
... ... ....... ...... +.+..+...+.+.+.+..... .......+.+..+
T Consensus 78 ------------------~~~-~~~--~~~~~~~-~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (259)
T PF01148_consen 78 ------------------PYF-FAT--ILIIALL-LFLVLG----ERRIRRIISTLFGLIYFGIFLLLLLIFFWFFGPPL 131 (259)
T ss_pred ------------------HHH-HHH--HHHHhhh-HHhhhc----chHHHHHHHHHHHHHHHhHHHHHHHhhhhccchHH
Confidence 000 000 0000001 011111 112223333333332222221 2223344566777
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCCCccc-ccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhccccCCcccCcCCcccCCC
Q 019084 207 FLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDP 285 (346)
Q Consensus 207 ~l~~~~~vw~~Dt~AYf~Gr~fGk~kL~-~ISPkKTwEG~iGG~l~~~l~~~l~~~~l~~~~~~~~p~~~~~~~~~~c~~ 285 (346)
.+..++++|.+|++||++||.|||| +. ++||||||||++||++++.+++.++.++....
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~-~~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~------------------- 191 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKH-LAPKISPKKTWEGSIAGFISSFIISFLLLYYLSSF------------------- 191 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-cCCCCCCCCCHHHHhHHHHHHHHHHHHHHHHhcch-------------------
Confidence 7888899999999999999999999 66 79999999999999999999988887654210
Q ss_pred CCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCCCC
Q 019084 286 GPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKVQSQ 346 (346)
Q Consensus 286 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~l~li~si~~~~GDL~eS~lKR~~gVKDsG~ 346 (346)
. ..+++.+++++++++++++|||+||++||++||||||+
T Consensus 192 ------------------~----~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~ 230 (259)
T PF01148_consen 192 ------------------F----LSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGN 230 (259)
T ss_pred ------------------h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 0 12478899999999999999999999999999999996
No 8
>PRK04032 hypothetical protein; Provisional
Probab=99.86 E-value=4.4e-22 Score=171.81 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=64.2
Q ss_pred Hhhhc-CCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhccccCCcccCcCCcccCCCCCCCCCCCCCCCCCCCc
Q 019084 224 FGFFF-GRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPW 302 (346)
Q Consensus 224 ~Gr~f-Gk~kL~~ISPkKTwEG~iGG~l~~~l~~~l~~~~l~~~~~~~~p~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~ 302 (346)
.||.| ++||+ +||||||||++||++++++++.+++++.... +
T Consensus 22 ~g~~~~dg~~i--iSP~KTwEG~iGGv~~~~l~~~~~~~~~~~~----------------------------------~- 64 (159)
T PRK04032 22 FGKTFVDGRRI--LGDGKTWRGLIGGILFGTLVGLIQNLLVPAY----------------------------------I- 64 (159)
T ss_pred CCCcCCCCCee--CCCCCcHHHhHHHHHHHHHHHHHHHHHHccc----------------------------------h-
Confidence 47777 66666 9999999999999999999998887543200 0
Q ss_pred cccccchhHHHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCC
Q 019084 303 KEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKVQ 344 (346)
Q Consensus 303 ~~~~~~~~~~~~i~l~li~si~~~~GDL~eS~lKR~~gVKDs 344 (346)
..+++.+++|++++++||+|||+||++||++||||+
T Consensus 65 ------~~~~~~~~~g~li~v~~~~GDL~eS~iKR~~gVKDg 100 (159)
T PRK04032 65 ------GALGVAIILAFLLSFGALLGDMLGSFIKRRLGLERG 100 (159)
T ss_pred ------hHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCCc
Confidence 013568999999999999999999999999999993
No 9
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=98.63 E-value=5.9e-08 Score=85.82 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=55.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHhhhhccccCCcccCcCCcccCCCCCCCCCCCCCCCCCCCccccccchhHHHHH
Q 019084 236 LSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHAL 315 (346)
Q Consensus 236 ISPkKTwEG~iGG~l~~~l~~~l~~~~l~~~~~~~~p~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i 315 (346)
.=.+|||||+++|.+++++++.+.+.... .. . .. +..+....+.+
T Consensus 44 lGdgKTwrG~i~gvl~g~l~g~i~~~l~~-~~-------~----------------~~-----------~~~~~~~~~~~ 88 (175)
T PF01864_consen 44 LGDGKTWRGFIGGVLAGTLVGIIQGLLLP-LS-------I----------------FA-----------LYFYGSLFFNL 88 (175)
T ss_pred cCCCCeEEeeeHHHHHHHHHHHHHHHHhh-hc-------c----------------cc-----------cccccchHHHH
Confidence 66899999999999999999987655421 00 0 00 00011235668
Q ss_pred HHHHHHHHhhchhhHHHHHHhhcCCCCCC
Q 019084 316 CLGLFASIIAPFGGFFASGFKRAFKIKVQ 344 (346)
Q Consensus 316 ~l~li~si~~~~GDL~eS~lKR~~gVKDs 344 (346)
.+++..++.+.+||+.-|.+||..|+|..
T Consensus 89 ~~g~ll~~gamlGDl~~SFIKRRlgi~~G 117 (175)
T PF01864_consen 89 LLGFLLGLGAMLGDLPGSFIKRRLGIPRG 117 (175)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCCCCC
Confidence 88999999999999999999999999854
No 10
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=97.97 E-value=1.8e-05 Score=71.76 Aligned_cols=55 Identities=25% Similarity=0.173 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhHHHHHHhhhcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHhh
Q 019084 208 LLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMG 264 (346)
Q Consensus 208 l~~~~~vw~~Dt~AYf~Gr~fGk~kL~~ISPkKTwEG~iGG~l~~~l~~~l~~~~l~ 264 (346)
..++++.|+ |+.|=.+||.||+.|. ++.|||+|.|.||.+.++++.++++.+++.
T Consensus 160 ~s~~Llswc-Dt~AdtvGRKfG~~tp-k~aknKSlAGSIgaft~Gvf~c~vy~gyf~ 214 (269)
T KOG4453|consen 160 GSISLLSWC-DTIADTVGRKFGSTTP-KYAKNKSLAGSIGAFTFGVFICIVYLGYFS 214 (269)
T ss_pred HHHHHHHHh-hhHHHHHhhhccccCC-CcCCCccccchHHHHHHHHHHHHHHHHHHh
Confidence 334556676 9999999999998875 688999999999999999999988876653
No 11
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=97.32 E-value=0.0011 Score=60.91 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=40.3
Q ss_pred HHHHHhhHHHHHHhhhcCCCcccccCCCCcchHHHHHHHHHHHHHHHHH
Q 019084 212 SLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLA 260 (346)
Q Consensus 212 ~~vw~~Dt~AYf~Gr~fGk~kL~~ISPkKTwEG~iGG~l~~~l~~~l~~ 260 (346)
++.-..|..|=.+|+.+||| -.+.++|||+||.+.+++++.++..++.
T Consensus 121 ~~l~~GD~lAsiiG~~~G~~-~~~~~~~KSleGSla~fi~~~l~~~~~~ 168 (216)
T COG0170 121 LVLALGDGLASIIGKRYGRH-KRILGNGKSLEGSLAFFIASFLVLLVLY 168 (216)
T ss_pred HHHHHhhHHHHHhCcccCcc-ccccCCCCchhhhHHHHHHHHHHHHHHH
Confidence 33446799999999999999 2268999999999999999999876543
No 12
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=94.84 E-value=0.028 Score=56.27 Aligned_cols=46 Identities=30% Similarity=0.361 Sum_probs=39.5
Q ss_pred HHHHhhHHHHHHhhhcCCCcccccCCCCcchHHHHHHHHHHHHHHHHH
Q 019084 213 LIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLA 260 (346)
Q Consensus 213 ~vw~~Dt~AYf~Gr~fGk~kL~~ISPkKTwEG~iGG~l~~~l~~~l~~ 260 (346)
++=.-||.|-.+|+++||+|-.+- |||.||-+.+++..+++..+.-
T Consensus 418 alGiGDTmASiiG~r~G~~RW~~T--kKTlEGT~Afivs~~iv~~ll~ 463 (510)
T KOG2468|consen 418 ALGIGDTMASIIGKRYGRIRWSGT--KKTLEGTLAFIVSSFIVCLLLL 463 (510)
T ss_pred eeccchHHHHHHhhhhcceecCCC--cceeehhhHHHHHHHHHHHHHH
Confidence 334679999999999999998854 9999999999999888877654
No 13
>TIGR00994 3a0901s05TIC20 chloroplast protein import component, Tic20 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic20 protein.
Probab=86.30 E-value=2 Score=40.29 Aligned_cols=57 Identities=21% Similarity=0.185 Sum_probs=39.4
Q ss_pred CCCCCCCCchhhhccccCCCCCcchhccCCCcccccchhhhhhHHHHHHHHHHHHHHH
Q 019084 4 ENNTSAPTTPRLRHRRRSNEAIPDATKANGSHLLVHDRNKYKSFLVRAYSTVWMIAGF 61 (346)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Riis~lvli~~~ 61 (346)
|.|.-.++-|++.++|||++.+|.+.|+..+- .--+..+|.+...|+...+....-.
T Consensus 73 ~~~~~~~~~p~~~~~~~~~~~pra~~~~~~~~-~~p~~~~kp~~w~RilA~LpYLLPL 129 (267)
T TIGR00994 73 TSNGLPPTAPGLPTHRRSIEPPRAAKDDFSKF-RFPPMTEKPRWWWRTLACVPYLIPL 129 (267)
T ss_pred CCCCCcccCCcchhccCCCCCcchhccccccc-CCCccccCCChHHHHHHHHHHHHHH
Confidence 34444567789999999999999886554432 2333456778999998887654333
No 14
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=72.83 E-value=30 Score=32.10 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHhhHHHHHHhhhcCCCccc-----ccCCC----CcchHHHHHHHHHHHHHHHHHH
Q 019084 211 ASLIVINDIAAYIFGFFFGRTPLI-----KLSPK----KTWEGFIGASVATITSAFVLAN 261 (346)
Q Consensus 211 ~~~vw~~Dt~AYf~Gr~fGk~kL~-----~ISPk----KTwEG~iGG~l~~~l~~~l~~~ 261 (346)
.+.+-..||.|==.|...+++|.. ++.|. =|++|.+.|++++.+++.....
T Consensus 113 s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~~ 172 (226)
T PF01940_consen 113 SIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAFL 172 (226)
T ss_pred HHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999887631 24443 4899999999999998887654
No 15
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=65.88 E-value=46 Score=31.07 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=36.1
Q ss_pred HHHHHhhHHHHHHhhhcCCCc-cc----ccCC----CCcchHHHHHHHHHHHHHHH
Q 019084 212 SLIVINDIAAYIFGFFFGRTP-LI----KLSP----KKTWEGFIGASVATITSAFV 258 (346)
Q Consensus 212 ~~vw~~Dt~AYf~Gr~fGk~k-L~----~ISP----kKTwEG~iGG~l~~~l~~~l 258 (346)
..+-..||.|==.|+..+|+| ++ |+.| .=|+||-+.+++++.+++..
T Consensus 119 ~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~ 174 (237)
T TIGR00297 119 VATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALL 174 (237)
T ss_pred HHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 445678999999999999865 32 2444 35899999999999988844
No 16
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=48.61 E-value=1.7e+02 Score=29.54 Aligned_cols=45 Identities=18% Similarity=-0.005 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhHHHHHHhhhcCCCcccccCCCCcchHHHHHHHHH
Q 019084 208 LLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVAT 252 (346)
Q Consensus 208 l~~~~~vw~~Dt~AYf~Gr~fGk~kL~~ISPkKTwEG~iGG~l~~ 252 (346)
.+++.-|-++|+.+-.-++-+++.+....+|||+||+..-++.+.
T Consensus 271 ~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp~~ 315 (432)
T KOG1440|consen 271 GILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLPGV 315 (432)
T ss_pred HHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCCce
Confidence 344555778999999999999999966999999999987766543
No 17
>PRK10847 hypothetical protein; Provisional
Probab=48.06 E-value=13 Score=34.01 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=19.4
Q ss_pred HHHHHHHhhHHHHHHhhhcCCCcc
Q 019084 210 PASLIVINDIAAYIFGFFFGRTPL 233 (346)
Q Consensus 210 ~~~~vw~~Dt~AYf~Gr~fGk~kL 233 (346)
..+-..+.|..+|..||.+|++.+
T Consensus 78 a~~Ga~lG~~i~Y~lGr~~G~~~l 101 (219)
T PRK10847 78 MLIAAIVGDAVNYTIGRLFGEKLF 101 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHh
Confidence 334567899999999999997755
No 18
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=47.78 E-value=72 Score=21.27 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019084 49 VRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAH 95 (346)
Q Consensus 49 ~Riis~lvli~~~~~~i~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~ 95 (346)
+-...+++|+|++.+++ +| .+.++-|.+|+..+.+
T Consensus 3 kSl~fa~iMVPVvma~i-lg-----------lIyGlGevfN~iS~~G 37 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALI-LG-----------LIYGLGEVFNLISKIG 37 (41)
T ss_pred HHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHHHHhcC
Confidence 34566778888776654 34 2457778888877654
No 19
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=41.49 E-value=36 Score=27.77 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhh--chhhHHHHHHhhcCCCCC
Q 019084 314 ALCLGLFASIIA--PFGGFFASGFKRAFKIKV 343 (346)
Q Consensus 314 ~i~l~li~si~~--~~GDL~eS~lKR~~gVKD 343 (346)
...+|.+++.+| .++++..+.+.|.+|++|
T Consensus 76 a~~~g~~IGflGvd~ir~~~~~~i~kK~g~~~ 107 (107)
T TIGR01594 76 SPFLGGMIGFVGVDKIREFAKRFINKKAGVDD 107 (107)
T ss_pred HHHHhhheeeccHHHHHHHHHHHHHhhcCCCC
Confidence 345566677766 688999999999999998
No 20
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=40.00 E-value=27 Score=26.88 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=19.3
Q ss_pred HhhHHHHH---HhhhcCCCccc--ccCCCCc
Q 019084 216 INDIAAYI---FGFFFGRTPLI--KLSPKKT 241 (346)
Q Consensus 216 ~~Dt~AYf---~Gr~fGk~kL~--~ISPkKT 241 (346)
..-.-||. .|+..||+++. .+-||.|
T Consensus 12 lgG~IA~~GD~iG~kvGKkrlslFgLRPr~T 42 (79)
T PF11283_consen 12 LGGLIAYLGDRIGSKVGKKRLSLFGLRPRYT 42 (79)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcCCCccc
Confidence 33444443 68899999876 7999998
No 21
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=35.10 E-value=21 Score=28.63 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=19.2
Q ss_pred HHHHHHhhHHHHHHhhhcCCCccc
Q 019084 211 ASLIVINDIAAYIFGFFFGRTPLI 234 (346)
Q Consensus 211 ~~~vw~~Dt~AYf~Gr~fGk~kL~ 234 (346)
.+.....|..+|..||.+|++.+.
T Consensus 24 ~~g~~~g~~~~y~lgr~~~~~~~~ 47 (123)
T PF09335_consen 24 TLGAVLGSLLAYLLGRYFGRRRLR 47 (123)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344568899999999999976555
No 22
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=32.30 E-value=22 Score=32.22 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.1
Q ss_pred HHHHHHhhHHHHHHhhhcCCCccc
Q 019084 211 ASLIVINDIAAYIFGFFFGRTPLI 234 (346)
Q Consensus 211 ~~~vw~~Dt~AYf~Gr~fGk~kL~ 234 (346)
.+....-|...|+.||.+|++.+-
T Consensus 64 ~lga~lGd~i~Y~iGr~~G~~~l~ 87 (208)
T COG0586 64 TLGALLGDLISYWIGRRFGRKLLR 87 (208)
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHH
Confidence 334567899999999999987554
No 23
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=31.48 E-value=2.7e+02 Score=26.08 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 019084 46 SFLVRAYSTVWMIAGFVLIVYMGHLYITAMV 76 (346)
Q Consensus 46 ~l~~Riis~lvli~~~~~~i~~G~~~~~~lv 76 (346)
+.++-+..++.++.+++.++..|...+.+++
T Consensus 196 ~~~kli~~~l~~i~~~~~i~isG~~~l~~l~ 226 (255)
T TIGR01597 196 LVKKLIVRCLTFIVIVCSILVSGPVYLLALI 226 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3334455555555555555555665544433
No 24
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=27.91 E-value=71 Score=26.47 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 019084 50 RAYSTVWMIAGFVL 63 (346)
Q Consensus 50 Riis~lvli~~~~~ 63 (346)
|-||-.+.+|++++
T Consensus 46 k~iS~~v~iP~i~l 59 (116)
T PF02046_consen 46 KKISFFVAIPAIAL 59 (116)
T ss_dssp HHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44666666665543
No 25
>PLN02777 photosystem I P subunit (PSI-P)
Probab=27.16 E-value=67 Score=28.27 Aligned_cols=35 Identities=6% Similarity=0.053 Sum_probs=20.2
Q ss_pred cCCCCCcchhccCCCcccccchhhhhhHHHHHHHH
Q 019084 20 RSNEAIPDATKANGSHLLVHDRNKYKSFLVRAYST 54 (346)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Riis~ 54 (346)
-+.|+++++++...+|.+...+++|.+.--+.-..
T Consensus 63 a~ge~s~~~~~~~~~ei~k~~~e~Wd~~EdK~av~ 97 (167)
T PLN02777 63 ATGEAPAEVETTELPEIVKTVQEAWDKVEDKYAVS 97 (167)
T ss_pred hccCCCcccccccHHHHHHHHHHHHhhhcchhHHH
Confidence 34566655555555566666666777666554433
No 26
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.67 E-value=1.7e+02 Score=24.03 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=16.9
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHH
Q 019084 236 LSPKKTWEGFIGASVATITSAFVLANI 262 (346)
Q Consensus 236 ISPkKTwEG~iGG~l~~~l~~~l~~~~ 262 (346)
++|-|=-.=+|+|++..+.+|++.=++
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555556777777666666665444
No 27
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=24.10 E-value=1.5e+02 Score=24.77 Aligned_cols=13 Identities=23% Similarity=0.297 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCch
Q 019084 1 MQSENNTSAPTTP 13 (346)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (346)
|.+|...++.++|
T Consensus 1 m~p~rdv~~~~~d 13 (124)
T KOG4753|consen 1 MSPERDVGVGTRD 13 (124)
T ss_pred CCCcCcCceeccC
Confidence 4556666666655
No 28
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.84 E-value=2.7e+02 Score=19.48 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 019084 42 NKYKSFLVRAYSTVWMIAGFVLIVYMGHL 70 (346)
Q Consensus 42 ~~~~~l~~Riis~lvli~~~~~~i~~G~~ 70 (346)
+-+++.+-|++-+++...+.+..+..|-+
T Consensus 2 e~~~~~~~~iiG~~~G~ila~l~l~~GF~ 30 (51)
T PF10031_consen 2 EFWKNHRGKIIGGLIGLILALLILTFGFW 30 (51)
T ss_pred hHHHHCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888776666666666654
No 29
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.01 E-value=72 Score=24.22 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=9.6
Q ss_pred CcchHHHHHHH
Q 019084 240 KTWEGFIGASV 250 (346)
Q Consensus 240 KTwEG~iGG~l 250 (346)
||+.|+-||+.
T Consensus 27 k~I~GSCGGi~ 37 (77)
T COG2991 27 KSIKGSCGGIA 37 (77)
T ss_pred cccccccccHH
Confidence 99999999953
No 30
>COG4944 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.85 E-value=1.8e+02 Score=26.29 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=18.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHH
Q 019084 239 KKTWEGFIGASVATITSAFVLAN 261 (346)
Q Consensus 239 kKTwEG~iGG~l~~~l~~~l~~~ 261 (346)
.-|..||..|++.+-+.+.+++.
T Consensus 156 rP~lAGfaaGL~aGgi~a~~Ya~ 178 (213)
T COG4944 156 RPTLAGFAAGLAAGGIGATVYAW 178 (213)
T ss_pred CchHHHHHHHHhcccHHHHhhhh
Confidence 45899999999988887776653
No 31
>PHA02898 virion envelope protein; Provisional
Probab=20.63 E-value=4.3e+02 Score=20.86 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhchhhHHHHHHhhcCC
Q 019084 315 LCLGLFASIIAPFGGFFASGFKRAFK 340 (346)
Q Consensus 315 i~l~li~si~~~~GDL~eS~lKR~~g 340 (346)
=+++.+++++..+|=++.|+.-|.++
T Consensus 48 Sii~FIlgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 48 SIISFILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 45677889999999999999998765
Done!