Query 019084
Match_columns 346
No_of_seqs 193 out of 1436
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 20.7 1E+02 0.0034 20.1 3.3 21 243-263 15-35 (44)
2 2l2t_A Receptor tyrosine-prote 18.0 1.3E+02 0.0043 19.7 3.3 14 244-257 15-28 (44)
3 1kvd_A SMK toxin; halotolerant 13.5 64 0.0022 21.7 1.0 24 236-259 19-42 (63)
4 2b2h_A AMT-1, ammonium transpo 12.2 1.6E+02 0.0055 28.3 3.8 29 312-344 270-298 (399)
5 3hd7_A Vesicle-associated memb 11.7 2.1E+02 0.0072 21.2 3.6 16 44-59 65-80 (91)
6 3b9w_A Ammonium transporter fa 10.2 1.7E+02 0.0057 28.2 3.2 33 312-344 260-293 (407)
7 2kog_A Vesicle-associated memb 10.1 98 0.0034 24.5 1.3 12 44-55 93-104 (119)
8 1dtc_A Acetyl-delta-toxin; NMR 7.8 1.4E+02 0.0047 17.0 0.9 11 322-332 4-14 (26)
9 2k2u_B Alpha trans-inducing pr 6.5 2E+02 0.0069 17.4 1.2 16 331-346 20-35 (35)
10 1u7g_A Probable ammonium trans 6.4 3E+02 0.01 26.2 3.1 30 312-344 282-311 (385)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.67 E-value=1e+02 Score=20.12 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 019084 243 EGFIGASVATITSAFVLANIM 263 (346)
Q Consensus 243 EG~iGG~l~~~l~~~l~~~~l 263 (346)
-|.+||+++-++++.+..+++
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHh
Confidence 466777776555554444443
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=17.97 E-value=1.3e+02 Score=19.68 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 019084 244 GFIGASVATITSAF 257 (346)
Q Consensus 244 G~iGG~l~~~l~~~ 257 (346)
|.+||++.-.+++.
T Consensus 15 gVVgGv~~v~ii~~ 28 (44)
T 2l2t_A 15 GVIGGLFILVIVGL 28 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH
Confidence 44555554444443
No 3
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=13.48 E-value=64 Score=21.69 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.5
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHH
Q 019084 236 LSPKKTWEGFIGASVATITSAFVL 259 (346)
Q Consensus 236 ISPkKTwEG~iGG~l~~~l~~~l~ 259 (346)
-|-.-|..|..||+++++..+++.
T Consensus 19 csgaatfgglaggivgciaagila 42 (63)
T 1kvd_A 19 CSGAATFGGLAGGIVGCIAAGILA 42 (63)
T ss_dssp CSSCCCCTTCCSHHHHHHHHHHHH
T ss_pred CccchhcccccchHHHHHHHHHHH
Confidence 678889999999999998877664
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=12.24 E-value=1.6e+02 Score=28.28 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCC
Q 019084 312 WHALCLGLFASIIAPFGGFFASGFKRAFKIKVQ 344 (346)
Q Consensus 312 ~~~i~l~li~si~~~~GDL~eS~lKR~~gVKDs 344 (346)
+.++++|++.+++..++- .+|+..++-|.
T Consensus 270 ~~A~iiG~iag~i~~~~~----~l~~kl~iDD~ 298 (399)
T 2b2h_A 270 KGAIVIGLVAGIVCYLAM----DFRIKKKIDES 298 (399)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHcCCCCC
Confidence 788999999999999886 58888999996
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=11.66 E-value=2.1e+02 Score=21.22 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHH
Q 019084 44 YKSFLVRAYSTVWMIA 59 (346)
Q Consensus 44 ~~~l~~Riis~lvli~ 59 (346)
|+|++.+++.+++.+.
T Consensus 65 wkn~K~~iii~~iv~~ 80 (91)
T 3hd7_A 65 WKNLKMMIILGVICAI 80 (91)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677766666554433
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=10.15 E-value=1.7e+02 Score=28.23 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhchhh-HHHHHHhhcCCCCCC
Q 019084 312 WHALCLGLFASIIAPFGG-FFASGFKRAFKIKVQ 344 (346)
Q Consensus 312 ~~~i~l~li~si~~~~GD-L~eS~lKR~~gVKDs 344 (346)
|.++++|++.+++..+|- +....+||..+|-|.
T Consensus 260 ~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~ 293 (407)
T 3b9w_A 260 VGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDT 293 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 788999999999999886 456678888999996
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=10.07 E-value=98 Score=24.46 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHH
Q 019084 44 YKSFLVRAYSTV 55 (346)
Q Consensus 44 ~~~l~~Riis~l 55 (346)
|+|++..++.++
T Consensus 93 wkn~K~~iii~~ 104 (119)
T 2kog_A 93 WKNLKMMIILGV 104 (119)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555444433
No 8
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=7.75 E-value=1.4e+02 Score=17.02 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=8.2
Q ss_pred HHhhchhhHHH
Q 019084 322 SIIAPFGGFFA 332 (346)
Q Consensus 322 si~~~~GDL~e 332 (346)
-+++.+||++.
T Consensus 4 DIisTIgdfvK 14 (26)
T 1dtc_A 4 DIISTIGDLVK 14 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 46778899864
No 9
>2k2u_B Alpha trans-inducing protein; VP16, TFIIH, TFB1, activation, transcription, PH domain, protein structure complex, DNA damage, DNA repair; NMR {Human herpesvirus 1} PDB: 2phe_C 2phg_B
Probab=6.53 E-value=2e+02 Score=17.39 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.3
Q ss_pred HHHHHhhcCCCCCCCC
Q 019084 331 FASGFKRAFKIKVQSQ 346 (346)
Q Consensus 331 ~eS~lKR~~gVKDsG~ 346 (346)
+|-|+-...|+.|+|.
T Consensus 20 FEQMFtdalgiDe~gg 35 (35)
T 2k2u_B 20 FEQMFTDALGIDEYGG 35 (35)
T ss_dssp HHHTTSCCCCCCSSCC
T ss_pred HHHHHHHHhcccccCC
Confidence 6888888999988873
No 10
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=6.44 E-value=3e+02 Score=26.17 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHhhcCCCCCC
Q 019084 312 WHALCLGLFASIIAPFGGFFASGFKRAFKIKVQ 344 (346)
Q Consensus 312 ~~~i~l~li~si~~~~GDL~eS~lKR~~gVKDs 344 (346)
+.++++|++.+++..++-- .+|+..++-|.
T Consensus 282 ~~A~iiG~iag~i~~~~~~---~l~~~l~iDD~ 311 (385)
T 1u7g_A 282 GGALIIGVVAGLAGLWGVT---MLKRLLRVDDP 311 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHCSCCG
T ss_pred HHHHHHHhHHHHHHHHHHH---HHHHhCCCCCC
Confidence 7889999999888877643 36777788885
Done!