Query 019087
Match_columns 346
No_of_seqs 285 out of 2062
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 99.9 7.9E-27 1.7E-31 189.7 16.7 132 53-192 2-134 (137)
2 cd03775 MATH_Ubp21p Ubiquitin- 99.9 1.4E-26 2.9E-31 187.4 14.7 125 55-189 2-134 (134)
3 cd03774 MATH_SPOP Speckle-type 99.9 1.3E-26 2.7E-31 189.0 14.5 134 51-192 2-138 (139)
4 cd03772 MATH_HAUSP Herpesvirus 99.9 4.1E-25 8.9E-30 179.6 16.7 130 210-341 2-134 (137)
5 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.1E-25 2.4E-30 183.5 12.5 134 54-188 1-147 (148)
6 cd03779 MATH_TRAF1 Tumor Necro 99.9 5.3E-25 1.1E-29 178.6 12.9 133 54-188 1-146 (147)
7 cd03777 MATH_TRAF3 Tumor Necro 99.9 7.7E-25 1.7E-29 184.8 14.4 138 50-190 35-185 (186)
8 cd03776 MATH_TRAF6 Tumor Necro 99.9 3.1E-25 6.8E-30 182.3 11.3 133 54-189 1-147 (147)
9 cd03781 MATH_TRAF4 Tumor Necro 99.9 7E-25 1.5E-29 181.3 13.0 133 54-189 1-154 (154)
10 cd03775 MATH_Ubp21p Ubiquitin- 99.9 2.2E-24 4.8E-29 174.5 15.3 124 212-338 2-134 (134)
11 cd00270 MATH_TRAF_C Tumor Necr 99.9 7.4E-25 1.6E-29 180.8 12.6 132 54-188 1-148 (149)
12 cd03773 MATH_TRIM37 Tripartite 99.9 1.7E-24 3.7E-29 174.9 12.8 126 52-189 3-130 (132)
13 cd03774 MATH_SPOP Speckle-type 99.9 3.6E-23 7.9E-28 168.6 14.9 128 210-342 4-139 (139)
14 cd03771 MATH_Meprin Meprin fam 99.9 2.8E-23 6.2E-28 171.5 13.1 132 53-188 1-166 (167)
15 cd03773 MATH_TRIM37 Tripartite 99.9 6E-23 1.3E-27 165.9 13.5 124 208-338 2-130 (132)
16 cd03778 MATH_TRAF2 Tumor Necro 99.9 9E-23 1.9E-27 167.2 13.8 134 51-188 16-163 (164)
17 cd03780 MATH_TRAF5 Tumor Necro 99.9 3.6E-22 7.8E-27 162.8 12.9 127 211-337 1-147 (148)
18 cd03779 MATH_TRAF1 Tumor Necro 99.9 3.9E-22 8.5E-27 161.8 12.6 128 211-338 1-147 (147)
19 cd00270 MATH_TRAF_C Tumor Necr 99.9 3.5E-22 7.7E-27 164.8 11.9 126 211-338 1-149 (149)
20 cd03777 MATH_TRAF3 Tumor Necro 99.9 1.6E-21 3.5E-26 164.6 13.8 129 209-339 37-185 (186)
21 cd03776 MATH_TRAF6 Tumor Necro 99.9 5.2E-22 1.1E-26 163.2 9.7 126 211-338 1-147 (147)
22 cd00121 MATH MATH (meprin and 99.9 7.5E-21 1.6E-25 151.5 15.2 125 54-189 1-126 (126)
23 cd03781 MATH_TRAF4 Tumor Necro 99.9 2.5E-21 5.3E-26 160.1 12.8 126 211-338 1-154 (154)
24 cd03778 MATH_TRAF2 Tumor Necro 99.9 4E-21 8.7E-26 157.5 12.7 129 209-338 17-164 (164)
25 cd03771 MATH_Meprin Meprin fam 99.9 4.6E-21 9.9E-26 158.4 12.6 125 211-338 2-167 (167)
26 cd00121 MATH MATH (meprin and 99.8 2.8E-20 6E-25 148.2 14.8 124 212-338 2-126 (126)
27 PF00917 MATH: MATH domain; I 99.8 3.7E-20 8.1E-25 146.4 10.7 118 60-190 1-119 (119)
28 PF00917 MATH: MATH domain; I 99.8 2E-19 4.3E-24 142.3 9.1 116 217-339 1-119 (119)
29 cd03783 MATH_Meprin_Alpha Mepr 99.8 3.8E-19 8.2E-24 145.1 10.6 133 54-188 2-166 (167)
30 cd03782 MATH_Meprin_Beta Mepri 99.8 1.8E-18 3.9E-23 140.3 10.9 132 53-188 1-166 (167)
31 smart00061 MATH meprin and TRA 99.7 6.7E-17 1.5E-21 122.4 11.5 94 56-164 2-95 (95)
32 cd03783 MATH_Meprin_Alpha Mepr 99.7 3.2E-17 7E-22 133.8 10.2 126 211-338 2-167 (167)
33 cd03782 MATH_Meprin_Beta Mepri 99.7 9.6E-17 2.1E-21 130.3 10.0 124 211-337 2-166 (167)
34 smart00061 MATH meprin and TRA 99.6 3.1E-15 6.7E-20 113.2 11.7 93 213-313 2-95 (95)
35 COG5077 Ubiquitin carboxyl-ter 99.6 3.4E-15 7.5E-20 143.9 5.6 147 38-195 23-175 (1089)
36 COG5077 Ubiquitin carboxyl-ter 99.4 9.9E-13 2.1E-17 127.2 7.3 129 210-342 38-173 (1089)
37 KOG1987 Speckle-type POZ prote 98.9 6.4E-10 1.4E-14 102.2 3.9 262 58-340 8-294 (297)
38 KOG1987 Speckle-type POZ prote 98.3 9.8E-06 2.1E-10 74.4 12.4 119 214-343 7-129 (297)
39 KOG1863 Ubiquitin carboxyl-ter 98.1 3.1E-06 6.8E-11 90.0 5.5 131 54-196 27-157 (1093)
40 KOG1863 Ubiquitin carboxyl-ter 98.1 4E-06 8.7E-11 89.2 5.5 129 212-345 28-157 (1093)
41 KOG0297 TNF receptor-associate 97.3 0.00019 4.1E-09 68.2 3.1 81 52-133 278-365 (391)
42 KOG0297 TNF receptor-associate 95.8 0.0082 1.8E-07 57.2 3.5 78 209-286 278-365 (391)
43 PF08922 DUF1905: Domain of un 20.1 1.5E+02 0.0033 21.1 3.4 17 80-96 38-54 (80)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.95 E-value=7.9e-27 Score=189.65 Aligned_cols=132 Identities=18% Similarity=0.344 Sum_probs=110.4
Q ss_pred CcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCC-CCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEE
Q 019087 53 PTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSK-NVKEHISVYLAMANTSSLQLGWEVYAVFRLFLL 131 (346)
Q Consensus 53 ~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~-~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll 131 (346)
.|+|+|+|+|||.+ ++.++|+.|.+||++|+|++||+|+... +..+||||||.|.... ....|++.|+|+|+|+
T Consensus 2 ~~~~~~~I~~~S~l----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEE
Confidence 58999999999998 4789999999999999999999996521 3458999999997653 3347999999999999
Q ss_pred eCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087 132 DQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK 192 (346)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~ 192 (346)
|+++......+. ..+.|......|||.+||+|++|.+++++||+||+|+|+|+|+|-+
T Consensus 77 ~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 998543333322 4568876677899999999999988889999999999999998865
No 2
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.94 E-value=1.4e-26 Score=187.44 Aligned_cols=125 Identities=26% Similarity=0.559 Sum_probs=106.2
Q ss_pred EEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCC----CCCCCEEEEEEEEEE
Q 019087 55 HYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSS----LQLGWEVYAVFRLFL 130 (346)
Q Consensus 55 ~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~----~~~~w~~~~~~~~~l 130 (346)
+|+|+|+|||.+ ++.++|++|.+|||+|+|.+||+|+. . .+||||||.+.+... .+.+|.+.|+|+|.|
T Consensus 2 ~f~w~I~~fS~~----~~~~~S~~F~vGG~~W~l~~yP~G~~-~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l 74 (134)
T cd03775 2 SFTWRIKNWSEL----EKKVHSPKFKCGGFEWRILLFPQGNS-Q--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVI 74 (134)
T ss_pred cEEEEECCcccC----CcceeCCCEEECCeeEEEEEeCCCCC-C--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEE
Confidence 599999999996 47999999999999999999999976 2 789999999976433 246799999999999
Q ss_pred EeCCCCceeEEeccccceeeecCCCccccccceeeccccccC----CCCceeCCEEEEEEEEE
Q 019087 131 LDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDA----SNGFLLEDTCVFGAEVF 189 (346)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~----~~~fl~dD~l~i~~~v~ 189 (346)
+||.++....... ..+.|+....+|||.+||++++|++| ++|||+||+|+|++.|+
T Consensus 75 ~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 75 SNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9998655433332 57899877789999999999999955 67999999999999874
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.94 E-value=1.3e-26 Score=189.01 Aligned_cols=134 Identities=27% Similarity=0.447 Sum_probs=111.3
Q ss_pred CCCcEEEEEEcCcccccccCCCeEEcCceEECCe---eEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEE
Q 019087 51 ASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFR 127 (346)
Q Consensus 51 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~---~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~ 127 (346)
+...+|+|+|+|||.+++..++.+.|++|.+||+ +|+|++||+|+. ++..+|+||||+++... .+++.|+|+
T Consensus 2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f~ 76 (139)
T cd03774 2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK 76 (139)
T ss_pred ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEEE
Confidence 3467899999999998654478999999999995 999999999986 45678999999997532 367999999
Q ss_pred EEEEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087 128 LFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK 192 (346)
Q Consensus 128 ~~ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~ 192 (346)
|.|+|+.++........ ..+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus 77 ~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 77 FSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 99999987654332221 3567765 57899999999999987778999999999999999975
No 4
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.93 E-value=4.1e-25 Score=179.56 Aligned_cols=130 Identities=16% Similarity=0.318 Sum_probs=109.7
Q ss_pred CceEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCC--CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCC
Q 019087 210 SIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRH--GTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQV 287 (346)
Q Consensus 210 ~~~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~--~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~ 287 (346)
.+.++|+|++||.+ ++.+.|+.|.+||++|+|.+||+|+.. +..++|||||.|.... ....|++.|+|+|+|+|++
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence 36899999999998 568999999999999999999999654 2347999999997643 2337999999999999998
Q ss_pred CC-eeeeecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEe
Q 019087 288 QA-RHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG 341 (346)
Q Consensus 288 ~~-~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~ 341 (346)
+. .+......+.|.....+|||++||+|++|+++.+|||+||+|+|||+|+|-.
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 53 3444555678877778999999999999987678999999999999998865
No 5
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.93 E-value=1.1e-25 Score=183.46 Aligned_cols=134 Identities=19% Similarity=0.294 Sum_probs=107.1
Q ss_pred cEEEEEEcCcccccc--cCCC--eEEcCce--EECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEEEE
Q 019087 54 THYTVKINSFSLLLK--TSVE--KYETGDF--EAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYAVF 126 (346)
Q Consensus 54 ~~~~~~I~nfs~~~~--~~~~--~~~S~~f--~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~~~ 126 (346)
|+|.|+|+|||++++ ..|+ .++|++| .++||+|+|++||||.+ .+.++||||||.++.++.+ -..|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence 689999999999975 2466 8999999 89999999999999988 5678899999999987543 3579999999
Q ss_pred EEEEEeCCCCcee-EEeccc-cceeeecCC----CccccccceeeccccccCCCCceeCCEEEEEEEE
Q 019087 127 RLFLLDQNKDNFL-ILQDAM-GAERRFHRL----KLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 188 (346)
Q Consensus 127 ~~~ll~~~~~~~~-~~~~~~-~~~~~F~~~----~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v 188 (346)
+|+|+||.+.... ...... .....|... +..||+.+||++++|+.++.+||+||+|+|+|.|
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 9999999865432 111000 013568654 4579999999999998444599999999999987
No 6
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.93 E-value=5.3e-25 Score=178.58 Aligned_cols=133 Identities=23% Similarity=0.321 Sum_probs=104.3
Q ss_pred cEEEEEEcCccccccc--CC--CeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEEEE
Q 019087 54 THYTVKINSFSLLLKT--SV--EKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYAVF 126 (346)
Q Consensus 54 ~~~~~~I~nfs~~~~~--~~--~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~~~ 126 (346)
|+|.|+|+||++..+. .+ ..++||+|+.+ ||+|+|++||||.+ .+.++|+||||.+++++.+ -..|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence 6899999999976652 23 47999999876 99999999999988 5678899999999986432 3479999999
Q ss_pred EEEEEeCCCCceeEEeccccc--eeeec----CCCccccccceeeccccccCCCCceeCCEEEEEEEE
Q 019087 127 RLFLLDQNKDNFLILQDAMGA--ERRFH----RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 188 (346)
Q Consensus 127 ~~~ll~~~~~~~~~~~~~~~~--~~~F~----~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v 188 (346)
+|+|+||.+......... .. .+.|. ..+..||+.+||++++|+.+..+||+||+++|+|+|
T Consensus 80 tfsLlDq~~~~~~~~~~~-~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 80 TFMLLDQNNREHVIDAFR-PDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEEECCCCCCCCcEeec-CCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 999999976443221111 01 35686 334579999999999998322399999999999987
No 7
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.92 E-value=7.7e-25 Score=184.82 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=108.3
Q ss_pred cCCCcEEEEEEcCcccccc--cCCC--eEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEE
Q 019087 50 GASPTHYTVKINSFSLLLK--TSVE--KYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEV 122 (346)
Q Consensus 50 ~~~~~~~~~~I~nfs~~~~--~~~~--~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~ 122 (346)
....|+|.|+|+|||.+++ ..|+ .++|++|++| ||+|+|++||||.+ .+.++||||||.+++++.+ ...|++
T Consensus 35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~ 113 (186)
T cd03777 35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF 113 (186)
T ss_pred cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCce
Confidence 3447999999999999865 2355 7999999999 99999999999987 5678899999999987542 457999
Q ss_pred EEEEEEEEEeCCCCceeEEe--ccccceeeec-CC---CccccccceeeccccccCCCCceeCCEEEEEEEEEE
Q 019087 123 YAVFRLFLLDQNKDNFLILQ--DAMGAERRFH-RL---KLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV 190 (346)
Q Consensus 123 ~~~~~~~ll~~~~~~~~~~~--~~~~~~~~F~-~~---~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v 190 (346)
.++++|.|+||.+....... ........|. .. +..||+.+||++++|+ +++||+||+|+|+|.|..
T Consensus 114 ~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 114 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred eEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEec
Confidence 99999999999753111110 0000224575 22 4579999999999999 688999999999998863
No 8
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.92 E-value=3.1e-25 Score=182.34 Aligned_cols=133 Identities=25% Similarity=0.313 Sum_probs=104.2
Q ss_pred cEEEEEEcCcccccc-c-CCCe--EEcCceEE--CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCC-CCCCCEEEEEE
Q 019087 54 THYTVKINSFSLLLK-T-SVEK--YETGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSS-LQLGWEVYAVF 126 (346)
Q Consensus 54 ~~~~~~I~nfs~~~~-~-~~~~--~~S~~f~~--gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~-~~~~w~~~~~~ 126 (346)
|+|.|+|+|||.+++ . .|+. ++|++|.+ |||+|+|++||+|.. ++..+||||||+++++.. ...+|++.|++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence 689999999998654 2 3554 88999985 799999999999987 566789999999988654 24579999999
Q ss_pred EEEEEeCCCCceeEEe--ccccceeeecC-----CCccccccceeeccccccCCCCceeCCEEEEEEEEE
Q 019087 127 RLFLLDQNKDNFLILQ--DAMGAERRFHR-----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 189 (346)
Q Consensus 127 ~~~ll~~~~~~~~~~~--~~~~~~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~ 189 (346)
+|+|+||.++...... ........|.. ....|||.+||++++|+ +++||+||+|+|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence 9999999864332110 00002345653 34679999999999998 56899999999999984
No 9
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.92 E-value=7e-25 Score=181.27 Aligned_cols=133 Identities=22% Similarity=0.336 Sum_probs=105.2
Q ss_pred cEEEEEEcCccccccc----CCCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEEEEE
Q 019087 54 THYTVKINSFSLLLKT----SVEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVYAVF 126 (346)
Q Consensus 54 ~~~~~~I~nfs~~~~~----~~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~~~~ 126 (346)
|+|.|+|+|||.+++. .++.+.|++|.+| ||+|+|++||||.. ++..+|||+||++++++.+. ..|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence 6899999999998752 2579999999999 99999999999987 56788999999999864432 489999999
Q ss_pred EEEEEeCCCC--ce--eEEec--cccceeeecC--------CCccccccceeeccccccCCCCceeCCEEEEEEEEE
Q 019087 127 RLFLLDQNKD--NF--LILQD--AMGAERRFHR--------LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 189 (346)
Q Consensus 127 ~~~ll~~~~~--~~--~~~~~--~~~~~~~F~~--------~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~ 189 (346)
+|+|+||.+. .. ..... .......|+. .+.+||+.+||++++|+ +++||+||+|+|+|+|.
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEeC
Confidence 9999999864 11 11000 0001344542 34579999999999999 67999999999999873
No 10
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.92 E-value=2.2e-24 Score=174.49 Aligned_cols=124 Identities=21% Similarity=0.445 Sum_probs=105.8
Q ss_pred eEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCC----CCCCCeEEEEEEEEEEeCC
Q 019087 212 KHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSAT----LTPGSKIYAEFTVRLLDQV 287 (346)
Q Consensus 212 ~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~----~~~~w~~~~~~~~~l~~~~ 287 (346)
+|+|+|.+||.+ ++.+.|+.|.+||++|+|.+||+|+.. .+|+||||++.+... .+.+|++.|+|+|+|+||.
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 589999999996 468999999999999999999999765 579999999876443 2457999999999999997
Q ss_pred CCe-eeeecceeeecCCCCCCChhcccCccccCCC----CCCceeCCEEEEEEEEE
Q 019087 288 QAR-HIAGKANFWFSASNPESGWARYVSFAYFNNP----GNGCLVKDVCSVEAEVT 338 (346)
Q Consensus 288 ~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~~yl~dD~l~i~~~V~ 338 (346)
++. +......+.|+....+|||.+||++++|+++ ++|||+||+|+|+|.|.
T Consensus 79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 643 4555667899877789999999999999854 57999999999999873
No 11
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.92 E-value=7.4e-25 Score=180.79 Aligned_cols=132 Identities=27% Similarity=0.418 Sum_probs=104.2
Q ss_pred cEEEEEEcCcccccc----cCCCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEEEE
Q 019087 54 THYTVKINSFSLLLK----TSVEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYAVF 126 (346)
Q Consensus 54 ~~~~~~I~nfs~~~~----~~~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~~~ 126 (346)
|+|+|+|+|||.+++ ..++.++|++|.+| ||+|+|++||+|.. ++.++||||||+++++..+ ..+|++.|+|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence 689999999999865 13679999999999 99999999999986 4567899999999886543 4679999999
Q ss_pred EEEEEeCCCC--ceeEEec--cccceeeec-----CCCccccccceeeccccccCCCCceeCCEEEEEEEE
Q 019087 127 RLFLLDQNKD--NFLILQD--AMGAERRFH-----RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 188 (346)
Q Consensus 127 ~~~ll~~~~~--~~~~~~~--~~~~~~~F~-----~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v 188 (346)
+|.|+||.++ ....... .......|. ....+|||.+||++++|+ +++||+||+|+|+|+|
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v 148 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEE
Confidence 9999999874 1211100 000123454 135789999999999998 4589999999999997
No 12
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=1.7e-24 Score=174.92 Aligned_cols=126 Identities=23% Similarity=0.410 Sum_probs=103.7
Q ss_pred CCcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEE
Q 019087 52 SPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLL 131 (346)
Q Consensus 52 ~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll 131 (346)
..++++|+|+|||.+++ .++.++|++|.+|||+|+|++||+|+. ++.++||||||.+.... .|.+.++|+|+|+
T Consensus 3 ~~~~~~~~I~~fS~~~~-~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~ll 76 (132)
T cd03773 3 PYDSATFTLENFSTLRQ-SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVEMV 76 (132)
T ss_pred CCcccEEEECChhhhhc-CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEEEE
Confidence 35789999999999854 367999999999999999999999987 55678999999987642 3678899999999
Q ss_pred eCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeC--CEEEEEEEEE
Q 019087 132 DQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLE--DTCVFGAEVF 189 (346)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~d--D~l~i~~~v~ 189 (346)
||.++....... ..+.|.. ..+|||.+||++++|+ ++|||+| |+|+|+|.|+
T Consensus 77 nq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 77 HQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR 130 (132)
T ss_pred cCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence 995433333322 4567865 4679999999999998 5799999 9999999985
No 13
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.90 E-value=3.6e-23 Score=168.57 Aligned_cols=128 Identities=26% Similarity=0.463 Sum_probs=106.2
Q ss_pred CceEEEEEccccccC---CceeecCcEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 019087 210 SIKHVWRIENFSKLR---SECCDSQVFNSGDQ---KWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRL 283 (346)
Q Consensus 210 ~~~~~~~I~nfs~l~---~~~~~S~~f~v~g~---~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l 283 (346)
...|+|+|++||++. ++.+.|+.|.+||+ +|+|.+||+|...+..+|+||||++.... .+++.|+|+|.|
T Consensus 4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~~l 79 (139)
T cd03774 4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI 79 (139)
T ss_pred EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEEEE
Confidence 357999999999874 45799999999995 99999999998766678999999986532 368999999999
Q ss_pred EeCCCCeee--eecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087 284 LDQVQARHI--AGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV 342 (346)
Q Consensus 284 ~~~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~ 342 (346)
+|+++.... .....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|+++
T Consensus 80 ~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~ 139 (139)
T cd03774 80 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139 (139)
T ss_pred EecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence 999876532 2233466764 578999999999999876689999999999999999863
No 14
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.90 E-value=2.8e-23 Score=171.51 Aligned_cols=132 Identities=23% Similarity=0.348 Sum_probs=101.2
Q ss_pred CcEEEEEEcCcccccc-c-CCCeEEcCce-EECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCC-CCCCCE-EEEEEE
Q 019087 53 PTHYTVKINSFSLLLK-T-SVEKYETGDF-EAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSS-LQLGWE-VYAVFR 127 (346)
Q Consensus 53 ~~~~~~~I~nfs~~~~-~-~~~~~~S~~f-~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~-~~~~w~-~~~~~~ 127 (346)
+.+|+|+|+|||.+++ . .++.++|++| .+|||+|+|++||+|++ + .++||||||+++++.. ...+|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 4689999999999963 3 4789999998 89999999999999987 5 6789999999998644 356799 589999
Q ss_pred EEEEeCCCCc---eeEEe----cccc-c----eeeecC-----------------CCccccccceeeccccccCCCCcee
Q 019087 128 LFLLDQNKDN---FLILQ----DAMG-A----ERRFHR-----------------LKLEWGFDEFIPIKAFNDASNGFLL 178 (346)
Q Consensus 128 ~~ll~~~~~~---~~~~~----~~~~-~----~~~F~~-----------------~~~~~G~~~Fi~~~~L~~~~~~fl~ 178 (346)
|+|+||.++. .+... +... . ...|.. .+.+|||.+||++++|+ ..+||+
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk 156 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLK 156 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCc
Confidence 9999997421 11110 0000 0 001221 23479999999999999 567999
Q ss_pred CCEEEEEEEE
Q 019087 179 EDTCVFGAEV 188 (346)
Q Consensus 179 dD~l~i~~~v 188 (346)
||+|.|++++
T Consensus 157 ~dtl~i~~~~ 166 (167)
T cd03771 157 GDDLIILLDF 166 (167)
T ss_pred CCEEEEEEEe
Confidence 9999999986
No 15
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.90 E-value=6e-23 Score=165.89 Aligned_cols=124 Identities=24% Similarity=0.437 Sum_probs=104.9
Q ss_pred CCCceEEEEEccccccC--CceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEe
Q 019087 208 APSIKHVWRIENFSKLR--SECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLD 285 (346)
Q Consensus 208 ~~~~~~~~~I~nfs~l~--~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~ 285 (346)
|+...++|+|++||.+. ++.+.|+.|.+||++|+|.+||+|+..+.++|||+||.+.... .|.+.++|+|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~----~~~~~~~~~l~lln 77 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL----GEASKYEYRVEMVH 77 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCC----CCceeEEEEEEEEc
Confidence 67788999999999985 3578999999999999999999998776678999999987631 36788999999999
Q ss_pred CC-CCeeeeecceeeecCCCCCCChhcccCccccCCCCCCceeC--CEEEEEEEEE
Q 019087 286 QV-QARHIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVK--DVCSVEAEVT 338 (346)
Q Consensus 286 ~~-~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~d--D~l~i~~~V~ 338 (346)
|. ...+......+.|.. ..+|||.+||++++|++ +|||+| |+|+|+|.|+
T Consensus 78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 94 344555566677865 46799999999999986 699999 9999999985
No 16
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.90 E-value=9e-23 Score=167.22 Aligned_cols=134 Identities=22% Similarity=0.373 Sum_probs=106.2
Q ss_pred CCCcEEEEEEcCccccccc--C--CCeEEcCceEE--CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEE
Q 019087 51 ASPTHYTVKINSFSLLLKT--S--VEKYETGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVY 123 (346)
Q Consensus 51 ~~~~~~~~~I~nfs~~~~~--~--~~~~~S~~f~~--gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~ 123 (346)
...|+|+|+|.||+++.+. . ...++||+|+. +||+|++++||||++ .+.+.|||||+++++++.+. .+|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCcee
Confidence 4579999999999998762 2 34799999975 489999999999988 57788999999999998775 789999
Q ss_pred EEEEEEEEeCCCCceeEEe---ccccceeeec----CCCccccccceeeccccccCCCCceeCCEEEEEEEE
Q 019087 124 AVFRLFLLDQNKDNFLILQ---DAMGAERRFH----RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 188 (346)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~---~~~~~~~~F~----~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v 188 (346)
.+++|+|+||++....... +. ....|. ..+.+||+..|+++++|.++ ++||+||+|.|+|.|
T Consensus 95 ~~itl~llDQ~~r~hi~~~~~pd~--~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 95 QKVTLMLLDQNNREHVIDAFRPDV--TSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred eEEEEEEECCCCCCcceeEEEcCc--chHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 9999999999754322210 00 111342 23457999999999999843 699999999999977
No 17
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.88 E-value=3.6e-22 Score=162.83 Aligned_cols=127 Identities=24% Similarity=0.348 Sum_probs=104.5
Q ss_pred ceEEEEEccccccC-----Cc--eeecCcE--EeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEE
Q 019087 211 IKHVWRIENFSKLR-----SE--CCDSQVF--NSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAEFT 280 (346)
Q Consensus 211 ~~~~~~I~nfs~l~-----~~--~~~S~~f--~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~ 280 (346)
+.++|+|.+|++++ ++ .+.|+.| .++|++|+|.+||+|.+.+.++|+||||+++.++.+. ..|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 46899999999986 23 6899999 8999999999999999888889999999998865443 5799999999
Q ss_pred EEEEeCCCCe-ee--ee---cceeeecCC----CCCCChhcccCccccCCCCCCceeCCEEEEEEEE
Q 019087 281 VRLLDQVQAR-HI--AG---KANFWFSAS----NPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEV 337 (346)
Q Consensus 281 ~~l~~~~~~~-~~--~~---~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V 337 (346)
|.|++|.+.. ++ .. ...+.|+.. +..||+++||++++|+..+++||+||+|+|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 9999998643 21 11 113567654 5579999999999998644689999999999987
No 18
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.88 E-value=3.9e-22 Score=161.81 Aligned_cols=128 Identities=20% Similarity=0.304 Sum_probs=102.3
Q ss_pred ceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 019087 211 IKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSKIYAEFT 280 (346)
Q Consensus 211 ~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~~ 280 (346)
+.++|+|++|++..+ ..++|+.|... |++|+|.+||+|.+.+.++|+|+||++..++.+ ...|++.++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 468999999997651 25899988754 999999999999988888899999999875433 24699999999
Q ss_pred EEEEeCCCCeeee--ecc---eeeec----CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087 281 VRLLDQVQARHIA--GKA---NFWFS----ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT 338 (346)
Q Consensus 281 ~~l~~~~~~~~~~--~~~---~~~F~----~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~ 338 (346)
|.|++|.+..+.. ... .+.|+ ..+.+||+++||++++|+...++||+||+++|+|+|.
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 9999998654321 111 25686 3456799999999999986335899999999999983
No 19
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.88 E-value=3.5e-22 Score=164.78 Aligned_cols=126 Identities=23% Similarity=0.388 Sum_probs=102.0
Q ss_pred ceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 019087 211 IKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSKIYAEFT 280 (346)
Q Consensus 211 ~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~~ 280 (346)
+.|+|+|++|+.+++ +.+.|+.|.+| |++|+|.+||+|...+.++||||||++.+...+ ...|++.++++
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 468999999999752 47899999999 999999999999876667899999999876443 35799999999
Q ss_pred EEEEeCCCC---eeeeec-----ceeeec-----CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087 281 VRLLDQVQA---RHIAGK-----ANFWFS-----ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT 338 (346)
Q Consensus 281 ~~l~~~~~~---~~~~~~-----~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~ 338 (346)
|.|+||.++ .+.... ....|. ....+|||.+||++++|++ .|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence 999999874 232211 123454 1356899999999999986 5899999999999983
No 20
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.87 E-value=1.6e-21 Score=164.63 Aligned_cols=129 Identities=22% Similarity=0.347 Sum_probs=105.2
Q ss_pred CCceEEEEEccccccCC-----c--eeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087 209 PSIKHVWRIENFSKLRS-----E--CCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE 278 (346)
Q Consensus 209 ~~~~~~~~I~nfs~l~~-----~--~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~ 278 (346)
..+.|+|+|.+|++.+. + .+.|+.|.++ |++|+|.+||+|++.++++|+|+||++++++.++ ..|++.++
T Consensus 37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~ 116 (186)
T cd03777 37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 116 (186)
T ss_pred cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEE
Confidence 36899999999998752 3 6899999999 9999999999999888889999999998865432 57999999
Q ss_pred EEEEEEeCCCC-eeeee-----cceeeec-CC---CCCCChhcccCccccCCCCCCceeCCEEEEEEEEEE
Q 019087 279 FTVRLLDQVQA-RHIAG-----KANFWFS-AS---NPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTV 339 (346)
Q Consensus 279 ~~~~l~~~~~~-~~~~~-----~~~~~F~-~~---~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i 339 (346)
++|.|++|.+. .++.. .....|. .. +.+||+++||++++|+. ++||+||+|+|+|.|..
T Consensus 117 ~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 117 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEec
Confidence 99999999752 11111 1225576 22 45799999999999986 68999999999998863
No 21
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.87 E-value=5.2e-22 Score=163.18 Aligned_cols=126 Identities=21% Similarity=0.268 Sum_probs=100.5
Q ss_pred ceEEEEEccccccCC-----c--eeecCcEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCCeEEEEEE
Q 019087 211 IKHVWRIENFSKLRS-----E--CCDSQVFNS--GDQKWKIQLYPKGRRHGTGTHLAMYLALADSAT-LTPGSKIYAEFT 280 (346)
Q Consensus 211 ~~~~~~I~nfs~l~~-----~--~~~S~~f~v--~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~-~~~~w~~~~~~~ 280 (346)
+.|+|+|.+|+.+.+ + .+.|+.|.+ +|++|+|.+||+|...+..+|||+||++..... ...+|++.++++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 468999999997642 2 378999985 799999999999988777789999999987543 235699999999
Q ss_pred EEEEeCCCCe-eeee-----cceeeecC-----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087 281 VRLLDQVQAR-HIAG-----KANFWFSA-----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT 338 (346)
Q Consensus 281 ~~l~~~~~~~-~~~~-----~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~ 338 (346)
|.|+||.++. ++.. .....|.. .+.+|||.+||++++|+. .+||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 9999998642 2211 12345653 346799999999999987 5899999999999983
No 22
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.86 E-value=7.5e-21 Score=151.45 Aligned_cols=125 Identities=33% Similarity=0.525 Sum_probs=101.2
Q ss_pred cEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEeC
Q 019087 54 THYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQ 133 (346)
Q Consensus 54 ~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll~~ 133 (346)
++|+|+|.+|+... ++.++|+.|.++|+.|+|.+||+|.. . ..+||||||.|.........|.+.++++|.|+++
T Consensus 1 ~~~~~~i~~~~~~~---~~~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (126)
T cd00121 1 GKHTWKIVNFSELE---GESIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQ 75 (126)
T ss_pred CEEEEEECCCCCCC---CcEEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECC
Confidence 47999999999832 68999999999999999999999975 2 5789999999988754445799999999999999
Q ss_pred CCCceeEEeccccceeeec-CCCccccccceeeccccccCCCCceeCCEEEEEEEEE
Q 019087 134 NKDNFLILQDAMGAERRFH-RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 189 (346)
Q Consensus 134 ~~~~~~~~~~~~~~~~~F~-~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~ 189 (346)
++.+..... ....|. ....+|||.+||++++|++ ..++.||+|+|+|+|.
T Consensus 76 ~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 76 NGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 844333221 234443 4568899999999999993 3349999999999983
No 23
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.86 E-value=2.5e-21 Score=160.11 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=102.1
Q ss_pred ceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEE
Q 019087 211 IKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAEFT 280 (346)
Q Consensus 211 ~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~ 280 (346)
+.|.|+|.+|+.+++ ..+.|+.|.+| |++|+|.+||+|...+.++|+|+||++..++.+. ..|++.++++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 468999999998752 36899999999 9999999999998888888999999998854443 4799999999
Q ss_pred EEEEeCCCC--e---eeeec-----ceeeecC--------CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087 281 VRLLDQVQA--R---HIAGK-----ANFWFSA--------SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT 338 (346)
Q Consensus 281 ~~l~~~~~~--~---~~~~~-----~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~ 338 (346)
|+|++|.+. . ++... ....|+. .+.+||+.+||++++|+. ++||+||+|+|+|+|.
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence 999999864 1 22111 1234542 345799999999999986 6899999999999983
No 24
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.86 E-value=4e-21 Score=157.49 Aligned_cols=129 Identities=22% Similarity=0.318 Sum_probs=106.7
Q ss_pred CCceEEEEEccccccCC-------ceeecCcEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087 209 PSIKHVWRIENFSKLRS-------ECCDSQVFNS--GDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE 278 (346)
Q Consensus 209 ~~~~~~~~I~nfs~l~~-------~~~~S~~f~v--~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~ 278 (346)
..+.++|+|+||+++.. ..++|+.|.. +|++|+|.+||+|++.+++.|||+||++.+++.++ ..|++..+
T Consensus 17 ~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~~ 96 (164)
T cd03778 17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK 96 (164)
T ss_pred cCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceeeE
Confidence 46899999999998762 2578887753 58999999999999988889999999999988777 78999999
Q ss_pred EEEEEEeCCCCeeeeecce-----eeec----CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087 279 FTVRLLDQVQARHIAGKAN-----FWFS----ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT 338 (346)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~-----~~F~----~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~ 338 (346)
++|+|+||++..|+..... ..|. ..+.+||+++|+++++|+.. ++||+||+|.|+|.|.
T Consensus 97 itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 97 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIVD 164 (164)
T ss_pred EEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEEC
Confidence 9999999987555543322 1342 23567999999999999864 5999999999999873
No 25
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.86 E-value=4.6e-21 Score=158.41 Aligned_cols=125 Identities=21% Similarity=0.353 Sum_probs=98.2
Q ss_pred ceEEEEEccccccC-C----ceeecCcE-EeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCe-EEEEEEEE
Q 019087 211 IKHVWRIENFSKLR-S----ECCDSQVF-NSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSK-IYAEFTVR 282 (346)
Q Consensus 211 ~~~~~~I~nfs~l~-~----~~~~S~~f-~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~-~~~~~~~~ 282 (346)
+.|+|+|.+||+++ + ..+.|+.| .++|++|+|.+||+|+.. .++||||||++.+++.+ ..+|+ +.++++|+
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~ 80 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATMT 80 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEEE
Confidence 57999999999985 2 36899998 999999999999999987 78899999999875443 36799 58999999
Q ss_pred EEeCCCC----eeeee----cc--------eeeecC-----------------CCCCCChhcccCccccCCCCCCceeCC
Q 019087 283 LLDQVQA----RHIAG----KA--------NFWFSA-----------------SNPESGWARYVSFAYFNNPGNGCLVKD 329 (346)
Q Consensus 283 l~~~~~~----~~~~~----~~--------~~~F~~-----------------~~~~~G~~~fi~~~~L~~~~~~yl~dD 329 (346)
|++|... .++.. .. ...|++ ++.+|||++||++++|+. ++||+||
T Consensus 81 LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~d 158 (167)
T cd03771 81 LLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKGD 158 (167)
T ss_pred EECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcCC
Confidence 9999741 12111 00 001221 335899999999999997 5799999
Q ss_pred EEEEEEEEE
Q 019087 330 VCSVEAEVT 338 (346)
Q Consensus 330 ~l~i~~~V~ 338 (346)
+|.|+++++
T Consensus 159 tl~i~~~~~ 167 (167)
T cd03771 159 DLIILLDFE 167 (167)
T ss_pred EEEEEEEeC
Confidence 999999873
No 26
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.85 E-value=2.8e-20 Score=148.16 Aligned_cols=124 Identities=31% Similarity=0.573 Sum_probs=103.7
Q ss_pred eEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCee
Q 019087 212 KHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARH 291 (346)
Q Consensus 212 ~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 291 (346)
.|+|+|.+|+...++.+.|+.|.++|+.|+|.+||+|... ..++||+||+|.........|++.++++|+|+++++.++
T Consensus 2 ~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred EEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 5899999999955678999999999999999999999765 457999999998765444579999999999999985555
Q ss_pred eeecceeeec-CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEE
Q 019087 292 IAGKANFWFS-ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVT 338 (346)
Q Consensus 292 ~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~ 338 (346)
......+.|. ....+|||.+||++++|+++ .+++||+|+|+|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~ 126 (126)
T cd00121 81 LSKSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK 126 (126)
T ss_pred ceEeccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence 5555555553 45689999999999999973 349999999999984
No 27
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.83 E-value=3.7e-20 Score=146.45 Aligned_cols=118 Identities=33% Similarity=0.582 Sum_probs=95.7
Q ss_pred EcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEeCCCCce
Q 019087 60 INSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVYAVFRLFLLDQNKDNF 138 (346)
Q Consensus 60 I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~~~~~~~ll~~~~~~~ 138 (346)
|+|||++.+ .+..+.|+.|.++|++|+|.+||+|+ .++||+||+|.....+. ..|++.+++++.|+++.++..
T Consensus 1 i~nfs~l~~-~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 74 (119)
T PF00917_consen 1 IKNFSKLKE-GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSI 74 (119)
T ss_dssp ETTGGGHHT-SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEE
T ss_pred CcccceEeC-CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcc
Confidence 789999973 12344458889999999999999975 57999999999986543 589999999999999998873
Q ss_pred eEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEE
Q 019087 139 LILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV 190 (346)
Q Consensus 139 ~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v 190 (346)
.... ..+.|... .+|||.+||++++|.++. |+.||+|+|+|+|+|
T Consensus 75 ~~~~----~~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 75 SKRI----KSHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEE----ECEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred eeee----eeeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence 3321 23788774 889999999999999433 899999999999986
No 28
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.80 E-value=2e-19 Score=142.26 Aligned_cols=116 Identities=34% Similarity=0.571 Sum_probs=94.6
Q ss_pred EccccccCC-ce-eecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEEEEEEeCCCCeeee
Q 019087 217 IENFSKLRS-EC-CDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAEFTVRLLDQVQARHIA 293 (346)
Q Consensus 217 I~nfs~l~~-~~-~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~~~ 293 (346)
|+|||++.. +. ..|+.+.++|++|+|.+||+|+ +++|++||+|....... ..|++.++++++|+++.+.....
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 76 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK 76 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence 689999973 33 3447888999999999999987 46999999999875543 57999999999999999876222
Q ss_pred ecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEE
Q 019087 294 GKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTV 339 (346)
Q Consensus 294 ~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i 339 (346)
....+.|... .+|||.+||++++|+++ .|++||+|+|+|+|+|
T Consensus 77 ~~~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 77 RIKSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred eeeeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 2125888754 78999999999999985 3899999999999987
No 29
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.80 E-value=3.8e-19 Score=145.12 Aligned_cols=133 Identities=20% Similarity=0.384 Sum_probs=102.1
Q ss_pred cEEEEEEcCccccccc--CCCeEEcCceEEC-CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEE-EEEEEE
Q 019087 54 THYTVKINSFSLLLKT--SVEKYETGDFEAG-GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEV-YAVFRL 128 (346)
Q Consensus 54 ~~~~~~I~nfs~~~~~--~~~~~~S~~f~~g-G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~-~~~~~~ 128 (346)
..++|+|.||+++.+. .+..++||+|+.. ||+.+|++||+|++..+.+.|||||+++++++.+ -++|++ .-+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 5689999999998763 4678999999874 9999999999998634668899999999998765 568995 569999
Q ss_pred EEEeCCCC---ceeE----Eeccccc------eeeecC--------------CCccccccceeeccccccCCCCceeCCE
Q 019087 129 FLLDQNKD---NFLI----LQDAMGA------ERRFHR--------------LKLEWGFDEFIPIKAFNDASNGFLLEDT 181 (346)
Q Consensus 129 ~ll~~~~~---~~~~----~~~~~~~------~~~F~~--------------~~~~~G~~~Fi~~~~L~~~~~~fl~dD~ 181 (346)
.|+||++. ..+. ..+.... ...|.. .+.++||..||++++|+ ..+||+||+
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdDt 159 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKNDD 159 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCCe
Confidence 99999752 1111 0010000 011432 24589999999999999 689999999
Q ss_pred EEEEEEE
Q 019087 182 CVFGAEV 188 (346)
Q Consensus 182 l~i~~~v 188 (346)
|.|.+++
T Consensus 160 lfI~~~~ 166 (167)
T cd03783 160 LIIFVDF 166 (167)
T ss_pred EEEEEec
Confidence 9999876
No 30
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.78 E-value=1.8e-18 Score=140.27 Aligned_cols=132 Identities=22% Similarity=0.353 Sum_probs=101.9
Q ss_pred CcEEEEEEcCccccccc--CCCeEEcCceEE-CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEE-EEEE
Q 019087 53 PTHYTVKINSFSLLLKT--SVEKYETGDFEA-GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVY-AVFR 127 (346)
Q Consensus 53 ~~~~~~~I~nfs~~~~~--~~~~~~S~~f~~-gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~-~~~~ 127 (346)
+..|+|+|.||+++.+. .+..++||+|+. .||+.++++||||++ .+ ++|||||+++++++.+ -++|++. -+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-DY-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-CC-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 35799999999998763 467899999964 699999999999987 34 6899999999998765 5689999 8999
Q ss_pred EEEEeCCC---CceeEEe----c--cccc-eeee--cCC-----------------CccccccceeeccccccCCCCcee
Q 019087 128 LFLLDQNK---DNFLILQ----D--AMGA-ERRF--HRL-----------------KLEWGFDEFIPIKAFNDASNGFLL 178 (346)
Q Consensus 128 ~~ll~~~~---~~~~~~~----~--~~~~-~~~F--~~~-----------------~~~~G~~~Fi~~~~L~~~~~~fl~ 178 (346)
|.|+||++ ...+... + .... ...| ... +.++|++.||++++|+ .+.||+
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yik 156 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIK 156 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCccc
Confidence 99999975 2222111 0 0000 0124 221 4689999999999999 689999
Q ss_pred CCEEEEEEEE
Q 019087 179 EDTCVFGAEV 188 (346)
Q Consensus 179 dD~l~i~~~v 188 (346)
||.+.|-+++
T Consensus 157 dD~ifi~~~~ 166 (167)
T cd03782 157 GDDVIFLLTM 166 (167)
T ss_pred CCeEEEEEec
Confidence 9999998765
No 31
>smart00061 MATH meprin and TRAF homology.
Probab=99.72 E-value=6.7e-17 Score=122.36 Aligned_cols=94 Identities=26% Similarity=0.435 Sum_probs=79.4
Q ss_pred EEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEeCCC
Q 019087 56 YTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNK 135 (346)
Q Consensus 56 ~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll~~~~ 135 (346)
++|+|+||+.+.. ++.++|++|.++|++|+|.+||+ .+|||+||.|.+....+..|++.|+++++|+|+++
T Consensus 2 ~~~~~~~~~~~~~--~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~ 72 (95)
T smart00061 2 LSHTFKNVSRLEE--GESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNG 72 (95)
T ss_pred ceeEEEchhhccc--CceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCC
Confidence 5799999999854 78999999999999999999998 37999999998765444579999999999999997
Q ss_pred CceeEEeccccceeeecCCCcccccccee
Q 019087 136 DNFLILQDAMGAERRFHRLKLEWGFDEFI 164 (346)
Q Consensus 136 ~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi 164 (346)
+.... . ..+.|.. ..+|||.+||
T Consensus 73 ~~~~~--~---~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 73 KSLSK--K---DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CEEee--e---eeEEEcC-CCccceeeEC
Confidence 65422 2 5788986 6889999886
No 32
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.72 E-value=3.2e-17 Score=133.82 Aligned_cols=126 Identities=18% Similarity=0.326 Sum_probs=98.7
Q ss_pred ceEEEEEccccccCC-----ceeecCcEEe-CCceEEEEEEeCCCCC-CCCCeEEEEEEecCCCCCC-CCCeE-EEEEEE
Q 019087 211 IKHVWRIENFSKLRS-----ECCDSQVFNS-GDQKWKIQLYPKGRRH-GTGTHLAMYLALADSATLT-PGSKI-YAEFTV 281 (346)
Q Consensus 211 ~~~~~~I~nfs~l~~-----~~~~S~~f~v-~g~~w~l~~yp~g~~~-~~~~~ls~~L~~~~~~~~~-~~w~~-~~~~~~ 281 (346)
..++|+|+||+++.+ ..++|+.|.. .|+++.|.+||+|++. +++.|+|||+++++++.+. ..|++ .-+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 468999999998763 3689998876 5999999999999874 6678999999999987665 77995 569999
Q ss_pred EEEeCCCC----eeee----ecc---------eeeecC--------------CCCCCChhcccCccccCCCCCCceeCCE
Q 019087 282 RLLDQVQA----RHIA----GKA---------NFWFSA--------------SNPESGWARYVSFAYFNNPGNGCLVKDV 330 (346)
Q Consensus 282 ~l~~~~~~----~~~~----~~~---------~~~F~~--------------~~~~~G~~~fi~~~~L~~~~~~yl~dD~ 330 (346)
.|+||+.. .|+. ... ...|++ ++.++||++||+++.|+. ++||+||+
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDt 159 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDD 159 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCCe
Confidence 99999741 1221 000 111432 245899999999999997 78999999
Q ss_pred EEEEEEEE
Q 019087 331 CSVEAEVT 338 (346)
Q Consensus 331 l~i~~~V~ 338 (346)
|.|.++++
T Consensus 160 lfI~~~~~ 167 (167)
T cd03783 160 LIIFVDFE 167 (167)
T ss_pred EEEEEecC
Confidence 99998863
No 33
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.70 E-value=9.6e-17 Score=130.27 Aligned_cols=124 Identities=20% Similarity=0.259 Sum_probs=98.4
Q ss_pred ceEEEEEccccccCC-----ceeecCcE-EeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEE-EEEEEE
Q 019087 211 IKHVWRIENFSKLRS-----ECCDSQVF-NSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIY-AEFTVR 282 (346)
Q Consensus 211 ~~~~~~I~nfs~l~~-----~~~~S~~f-~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~-~~~~~~ 282 (346)
+.++|+|+||+++.+ ..++|+.| ...|++.+|.+|++|++.+ +.|||||+++++++.+. ..|++. -+++|.
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~ 80 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATMM 80 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEEE
Confidence 468999999999773 36888866 4589999999999999876 67999999999977665 779999 999999
Q ss_pred EEeCCCC----eeeee--cc------e--eee--cCC-----------------CCCCChhcccCccccCCCCCCceeCC
Q 019087 283 LLDQVQA----RHIAG--KA------N--FWF--SAS-----------------NPESGWARYVSFAYFNNPGNGCLVKD 329 (346)
Q Consensus 283 l~~~~~~----~~~~~--~~------~--~~F--~~~-----------------~~~~G~~~fi~~~~L~~~~~~yl~dD 329 (346)
|+||+.. .|+.. +. . ..| ++. +.++||+.||++++|+. +.||+||
T Consensus 81 LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikdD 158 (167)
T cd03782 81 LLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKGD 158 (167)
T ss_pred EEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccCC
Confidence 9999741 23222 11 1 134 221 57899999999999997 7899999
Q ss_pred EEEEEEEE
Q 019087 330 VCSVEAEV 337 (346)
Q Consensus 330 ~l~i~~~V 337 (346)
.|.|-+++
T Consensus 159 ~ifi~~~~ 166 (167)
T cd03782 159 DVIFLLTM 166 (167)
T ss_pred eEEEEEec
Confidence 99998876
No 34
>smart00061 MATH meprin and TRAF homology.
Probab=99.64 E-value=3.1e-15 Score=113.17 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=78.8
Q ss_pred EEEEEccccccC-CceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCee
Q 019087 213 HVWRIENFSKLR-SECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARH 291 (346)
Q Consensus 213 ~~~~I~nfs~l~-~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 291 (346)
++|.|++|+.+. ++.+.|+.|.++|++|+|.+||++ +|||+||.|.+....+..|++.|+++|+|+++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~~------~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN------GFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEcC------CEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999999985 567999999999999999999983 5999999998765544579999999999999998655
Q ss_pred eeecceeeecCCCCCCChhccc
Q 019087 292 IAGKANFWFSASNPESGWARYV 313 (346)
Q Consensus 292 ~~~~~~~~F~~~~~~~G~~~fi 313 (346)
.....+.|.. ..+|||.+||
T Consensus 76 -~~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 76 -SKKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred -eeeeeEEEcC-CCccceeeEC
Confidence 4456788986 6789999886
No 35
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.4e-15 Score=143.85 Aligned_cols=147 Identities=27% Similarity=0.481 Sum_probs=117.6
Q ss_pred CCcccccccccccCCCcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCC--
Q 019087 38 GDEIDRFALSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSS-- 115 (346)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~-- 115 (346)
++++......+.+...-.|+|+|++||.+. ++.+||+|.+||+.|+|.++|+|+. ..-+||||.....+.
T Consensus 23 ~~~L~~~~pd~Ee~~~~sftW~vk~wsel~----~k~~Sp~F~vg~~twki~lfPqG~n----q~~~sVyLe~~pqe~e~ 94 (1089)
T COG5077 23 GSILPQFDPDVEELLEMSFTWKVKRWSELA----KKVESPPFSVGGHTWKIILFPQGNN----QCNVSVYLEYEPQELEE 94 (1089)
T ss_pred HHhhhhcCccHHHHhhcccceecCChhhhh----hhccCCcccccCeeEEEEEecccCC----ccccEEEEEeccchhhh
Confidence 334444455566677889999999999995 4789999999999999999999976 223999999887532
Q ss_pred CC-CCCEEEEEEEEEEEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCC---ceeCCEEEEEEEEEEe
Q 019087 116 LQ-LGWEVYAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNG---FLLEDTCVFGAEVFVC 191 (346)
Q Consensus 116 ~~-~~w~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~---fl~dD~l~i~~~v~v~ 191 (346)
.+ ..|.|+|+|.|.|-+...+....... ..|+|.....+|||.+||.+..|.-|+.| |+.+|.+.|++.|+|+
T Consensus 95 ~~gk~~~ccaqFaf~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvl 171 (1089)
T COG5077 95 TGGKYYDCCAQFAFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVL 171 (1089)
T ss_pred hcCcchhhhhheeeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEE
Confidence 12 34999999999999887754332222 57899998999999999999999876544 8999999999999999
Q ss_pred eecc
Q 019087 192 KERS 195 (346)
Q Consensus 192 ~~~~ 195 (346)
+++.
T Consensus 172 kdPT 175 (1089)
T COG5077 172 KDPT 175 (1089)
T ss_pred eCCc
Confidence 9864
No 36
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.9e-13 Score=127.17 Aligned_cols=129 Identities=19% Similarity=0.386 Sum_probs=107.3
Q ss_pred CceEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCC--CC-CCCeEEEEEEEEEEeC
Q 019087 210 SIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSAT--LT-PGSKIYAEFTVRLLDQ 286 (346)
Q Consensus 210 ~~~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~--~~-~~w~~~~~~~~~l~~~ 286 (346)
...++|+|++++.+.. ...|+.|.+||+.|+|.++|+|+... .+|+||+...... .. ..|.|+++|.|.+-+.
T Consensus 38 ~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p 113 (1089)
T COG5077 38 EMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDISNP 113 (1089)
T ss_pred hcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecCCC
Confidence 4678999999999974 78899999999999999999997642 3899999876321 11 3599999999999888
Q ss_pred CCCe-eeeecceeeecCCCCCCChhcccCccccCCCCC---CceeCCEEEEEEEEEEEee
Q 019087 287 VQAR-HIAGKANFWFSASNPESGWARYVSFAYFNNPGN---GCLVKDVCSVEAEVTVHGV 342 (346)
Q Consensus 287 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~---~yl~dD~l~i~~~V~i~~~ 342 (346)
..+. ....+..|+|.....+||+.+|+.+..|..|.. .|+.+|++.|.|.|.|++.
T Consensus 114 ~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 114 KYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred CCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 7642 345667899998899999999999999987544 3788999999999999987
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.93 E-value=6.4e-10 Score=102.22 Aligned_cols=262 Identities=23% Similarity=0.327 Sum_probs=172.3
Q ss_pred EEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEeCCCCc
Q 019087 58 VKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQNKDN 137 (346)
Q Consensus 58 ~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll~~~~~~ 137 (346)
|.+.+++... ..++|..|..+|..|++.+||.|+ +++.|+.+.... +|.+.+.++|.+.|+....
T Consensus 8 ~~~~~~~~~~----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~ 72 (297)
T KOG1987|consen 8 WVISNFSSVG----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEK 72 (297)
T ss_pred eeeccCcchh----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCCcc
Confidence 8898988774 688999999999999999999973 688888877643 6999999999999998875
Q ss_pred e-eEEeccccceeeecC--CCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeeccCCccceecc--------cc
Q 019087 138 F-LILQDAMGAERRFHR--LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKGECLSM--------IK 206 (346)
Q Consensus 138 ~-~~~~~~~~~~~~F~~--~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~~~~~~~~~~~--------i~ 206 (346)
. ..... ....|.. -...||+...++...+.++..||+.++.+.+-+.+.|.+.... .+.... ..
T Consensus 73 ~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~--~d~~~~~~~~~~~~d~ 147 (297)
T KOG1987|consen 73 YLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGK--SDVFKESSKLITLLEE 147 (297)
T ss_pred eeeeeee---eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecc--cccchhcccccccccc
Confidence 4 33311 2333332 2578999999999999988899999988888777777666532 111111 22
Q ss_pred CCCC----ceEEEEEccccccCC----ceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC--CCCCeEE
Q 019087 207 DAPS----IKHVWRIENFSKLRS----ECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATL--TPGSKIY 276 (346)
Q Consensus 207 ~~~~----~~~~~~I~nfs~l~~----~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~--~~~w~~~ 276 (346)
.+.. ..|+|.+.+++.... ....+..|..++..|++.++|.+.+..+...++.+|......+. ...-.++
T Consensus 148 ~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 227 (297)
T KOG1987|consen 148 KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTY 227 (297)
T ss_pred chhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHH
Confidence 2334 789999999988762 24556788999999999999999766555677888876552211 1112233
Q ss_pred EEEEEEEEeCCCCe--ee-eec-ceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEE
Q 019087 277 AEFTVRLLDQVQAR--HI-AGK-ANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVH 340 (346)
Q Consensus 277 ~~~~~~l~~~~~~~--~~-~~~-~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~ 340 (346)
+......+|+.... +. .+. ...........+ ..++.++.++.....+++++|++.+++...++
T Consensus 228 ~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (297)
T KOG1987|consen 228 VIAAGFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPL 294 (297)
T ss_pred HHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCc
Confidence 33443445554321 11 011 001111111111 44566666555544567778888777766554
No 38
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.30 E-value=9.8e-06 Score=74.44 Aligned_cols=119 Identities=27% Similarity=0.458 Sum_probs=94.5
Q ss_pred EEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCee-e
Q 019087 214 VWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQARH-I 292 (346)
Q Consensus 214 ~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~-~ 292 (346)
.|.+.+++... ..+++..+..++..|++.+||.|+ +++.|+.+.... +|.+.+.+.|.+.|+...+. .
T Consensus 7 ~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 7 TWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred ceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCcceee
Confidence 37778887765 567888899999999999999985 789999876642 69999999999999988643 3
Q ss_pred ee-cceeeecCC--CCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeee
Q 019087 293 AG-KANFWFSAS--NPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS 343 (346)
Q Consensus 293 ~~-~~~~~F~~~--~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t 343 (346)
.. .....|... ...||+..+++...+.+.+.||++++.+++-+.+.|.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~ 129 (297)
T KOG1987|consen 76 TVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM 129 (297)
T ss_pred eeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee
Confidence 33 344444433 4689999999999999888899999888888887777654
No 39
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3.1e-06 Score=90.03 Aligned_cols=131 Identities=20% Similarity=0.230 Sum_probs=106.0
Q ss_pred cEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEeC
Q 019087 54 THYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFLLDQ 133 (346)
Q Consensus 54 ~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ll~~ 133 (346)
...+|...+...+. ....|+.|..|+.+|++.+.|+++. ...+++|+.+...... ..|++.+++.+.+.|.
T Consensus 27 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~ 97 (1093)
T KOG1863|consen 27 QSTTIDGIDDKSLL----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNT 97 (1093)
T ss_pred ccccccCcCcchhh----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhccccC
Confidence 34446665555443 3677899999999999999999874 5779999999987665 5599999999999994
Q ss_pred CCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeeccC
Q 019087 134 NKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERST 196 (346)
Q Consensus 134 ~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~~~ 196 (346)
.+........ ..|.|.....+||+..|+.++++.+|..+|+.+|++.++++|.+...+..
T Consensus 98 ~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 98 IDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred CCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 3333333222 68899998899999999999999999999999999999999999887754
No 40
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4e-06 Score=89.24 Aligned_cols=129 Identities=18% Similarity=0.203 Sum_probs=105.0
Q ss_pred eEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCC-e
Q 019087 212 KHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQVQA-R 290 (346)
Q Consensus 212 ~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~-~ 290 (346)
..+|...+...+.. ...++.|..++.+|++.+.|+++. ...+++|+.+...... ..|.+.+++.+.++|..+. .
T Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~ 102 (1093)
T KOG1863|consen 28 STTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLP 102 (1093)
T ss_pred cccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCCch
Confidence 33444444444443 667888999999999999999883 2579999999886655 4599999999999993332 2
Q ss_pred eeeecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeeecC
Q 019087 291 HIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNA 345 (346)
Q Consensus 291 ~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t~~ 345 (346)
.......|.|.....+||+.+|+.++++.++..+|+.+|++.++++|.+...++.
T Consensus 103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 5566788999998999999999999999999999999999999999999887764
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.26 E-value=0.00019 Score=68.24 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=69.0
Q ss_pred CCcEEEEEEcCcccccc----cCCCeEEcCceEE--CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEEE
Q 019087 52 SPTHYTVKINSFSLLLK----TSVEKYETGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVYA 124 (346)
Q Consensus 52 ~~~~~~~~I~nfs~~~~----~~~~~~~S~~f~~--gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~~ 124 (346)
-.|+..|+|.+|+..+. ..+..++|++|+. .||+.+.++|-+|++ .+.+.++|+|+.++.++.+ ...|++.-
T Consensus 278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccCCCC
Confidence 37999999999965544 2366899999964 699999999999988 6778899999999998664 45799999
Q ss_pred EEEEEEEeC
Q 019087 125 VFRLFLLDQ 133 (346)
Q Consensus 125 ~~~~~ll~~ 133 (346)
++++.|++|
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999999
No 42
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.78 E-value=0.0082 Score=57.18 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=66.2
Q ss_pred CCceEEEEEccccccC-------CceeecCcEE--eCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087 209 PSIKHVWRIENFSKLR-------SECCDSQVFN--SGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE 278 (346)
Q Consensus 209 ~~~~~~~~I~nfs~l~-------~~~~~S~~f~--v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~ 278 (346)
..+...|+|.+++... ...+.|+.|. -.|++....+|-+|++.+++.++|+|+.+..+..++ ..|++.-.
T Consensus 278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~~ 357 (391)
T KOG0297|consen 278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQK 357 (391)
T ss_pred cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCCc
Confidence 3688999999996554 2357777665 479999999999999999999999999999876665 67999999
Q ss_pred EEEEEEeC
Q 019087 279 FTVRLLDQ 286 (346)
Q Consensus 279 ~~~~l~~~ 286 (346)
+++.|++|
T Consensus 358 v~~~l~dq 365 (391)
T KOG0297|consen 358 VTLMLLDQ 365 (391)
T ss_pred eEEEEecc
Confidence 99999999
No 43
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=20.12 E-value=1.5e+02 Score=21.11 Aligned_cols=17 Identities=35% Similarity=0.841 Sum_probs=14.7
Q ss_pred EECCeeEEEEEEeCCCc
Q 019087 80 EAGGYKWKLVLYPAGNK 96 (346)
Q Consensus 80 ~~gG~~W~i~~yp~G~~ 96 (346)
.++|+.|+-.+.|.|++
T Consensus 38 tI~g~~~~~sl~p~g~G 54 (80)
T PF08922_consen 38 TIDGHPWRTSLFPMGNG 54 (80)
T ss_dssp EETTEEEEEEEEESSTT
T ss_pred EECCEEEEEEEEECCCC
Confidence 68999999999998754
Done!