Query 019087
Match_columns 346
No_of_seqs 285 out of 2062
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 10:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivv_A Speckle-type POZ protei 100.0 1.6E-30 5.4E-35 212.5 12.8 140 46-193 3-145 (145)
2 2foj_A Ubiquitin carboxyl-term 100.0 5.5E-29 1.9E-33 205.7 14.8 136 51-194 16-151 (155)
3 2foj_A Ubiquitin carboxyl-term 100.0 7.5E-29 2.6E-33 204.9 13.4 137 208-346 16-154 (155)
4 4gjh_A TNF receptor-associated 99.9 3.3E-28 1.1E-32 205.3 8.9 144 49-193 19-175 (178)
5 3hqi_A Speckle-type POZ protei 99.9 1.7E-27 6E-32 219.0 12.0 180 51-242 4-188 (312)
6 4ghu_A TNF receptor-associated 99.9 1E-27 3.6E-32 204.9 7.3 142 50-194 36-190 (198)
7 1lb6_A TNF receptor-associated 99.9 5.4E-27 1.8E-31 194.7 10.9 142 51-194 2-159 (160)
8 3ivv_A Speckle-type POZ protei 99.9 1.1E-26 3.6E-31 189.8 10.6 131 207-342 7-145 (145)
9 1ca9_A TRAF2, protein (TNF rec 99.9 7.1E-27 2.4E-31 199.7 8.4 140 51-192 40-191 (192)
10 1d00_A Tumor necrosis factor r 99.9 9.7E-27 3.3E-31 194.8 8.8 139 51-191 16-166 (168)
11 2gkw_A TNF receptor-associated 99.9 8.5E-27 2.9E-31 198.9 7.1 139 51-192 37-188 (192)
12 4gjh_A TNF receptor-associated 99.9 2.7E-26 9.4E-31 193.5 6.0 135 208-342 21-175 (178)
13 1flk_A TNF receptor associated 99.9 8.4E-26 2.9E-30 197.7 7.0 139 51-192 73-224 (228)
14 1ca9_A TRAF2, protein (TNF rec 99.9 1.6E-25 5.5E-30 191.3 5.4 133 208-341 40-191 (192)
15 1d00_A Tumor necrosis factor r 99.9 3.2E-25 1.1E-29 185.5 5.6 133 208-341 16-167 (168)
16 4ghu_A TNF receptor-associated 99.9 4.2E-25 1.4E-29 188.8 5.2 134 208-343 37-190 (198)
17 1lb6_A TNF receptor-associated 99.9 2.4E-24 8.2E-29 178.7 8.4 132 209-342 3-158 (160)
18 2gkw_A TNF receptor-associated 99.9 1.2E-24 4.1E-29 185.5 5.3 131 209-341 38-188 (192)
19 2f1z_A Ubiquitin carboxyl-term 99.9 1.1E-23 3.8E-28 206.6 11.7 137 50-194 27-163 (522)
20 1flk_A TNF receptor associated 99.9 6.7E-24 2.3E-28 185.6 5.1 133 209-343 74-226 (228)
21 3hqi_A Speckle-type POZ protei 99.9 1.9E-22 6.4E-27 185.4 11.7 128 210-342 6-141 (312)
22 2f1z_A Ubiquitin carboxyl-term 99.9 2.1E-22 7.1E-27 197.6 10.9 135 208-344 28-164 (522)
23 4gwm_A Meprin A subunit beta; 99.5 9.8E-14 3.4E-18 135.4 10.3 139 48-194 400-569 (592)
24 4gwm_A Meprin A subunit beta; 99.3 1.8E-12 6.3E-17 126.5 8.7 127 208-341 403-567 (592)
25 1yel_A AT1G16640; CESG, protei 49.5 35 0.0012 24.6 5.6 32 307-345 67-104 (104)
26 3v0r_A Major allergen ALT A 1; 33.1 11 0.00038 28.6 0.5 32 49-81 7-38 (133)
No 1
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.97 E-value=1.6e-30 Score=212.53 Aligned_cols=140 Identities=26% Similarity=0.422 Sum_probs=118.6
Q ss_pred cccccCCCcEEEEEEcCcccccccCCCeEEcCceEECCe---eEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEE
Q 019087 46 LSISGASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEV 122 (346)
Q Consensus 46 ~~~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~---~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~ 122 (346)
+.+.++..++|+|+|+|||.+++..++.++|++|.+||| +|+|++||+|+. .+..+||||||.|.+. ..|++
T Consensus 3 ~~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~----~~w~v 77 (145)
T 3ivv_A 3 GGSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSC----PKSEV 77 (145)
T ss_dssp --CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEEC----SSSEE
T ss_pred CCCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCC----CCCcE
Confidence 356777899999999999998754478999999999996 999999999987 4567899999999875 25999
Q ss_pred EEEEEEEEEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeee
Q 019087 123 YAVFRLFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKE 193 (346)
Q Consensus 123 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~ 193 (346)
.|+|+|+|+||+++........ ..++|.. ..+|||.+||++++|++++++||+||+|+|+|+|+|+++
T Consensus 78 ~a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 78 RAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 9999999999998765543332 5678874 588999999999999877899999999999999999864
No 2
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=5.5e-29 Score=205.70 Aligned_cols=136 Identities=18% Similarity=0.323 Sum_probs=113.2
Q ss_pred CCCcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEE
Q 019087 51 ASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLFL 130 (346)
Q Consensus 51 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~l 130 (346)
...|+|+|+|+|||.++ +.++|++|.+||++|+|++||+|++..+..+||||||.|... ..+.+|++.|+|+|+|
T Consensus 16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l 90 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI 90 (155)
T ss_dssp CSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEE
T ss_pred CCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEE
Confidence 45799999999999994 689999999999999999999997511357899999999654 3456799999999999
Q ss_pred EeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeec
Q 019087 131 LDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER 194 (346)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~ 194 (346)
+||+++.....+. ..+.|.....+|||.+||++++|++|+++||+||+|+|+|+|+|.+++
T Consensus 91 ~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 91 INYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 151 (155)
T ss_dssp CCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred EcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence 9998875333333 578898767889999999999999888999999999999999996654
No 3
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=7.5e-29 Score=204.86 Aligned_cols=137 Identities=14% Similarity=0.257 Sum_probs=117.5
Q ss_pred CCCceEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCC-CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 019087 208 APSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRH-GTGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQ 286 (346)
Q Consensus 208 ~~~~~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~-~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~ 286 (346)
++.+.|+|+|+||+.+. +.+.|+.|.++|++|+|.+||+|+.. +.++||||||+|... ..+..|++.|+|+|+|+||
T Consensus 16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~ 93 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 93 (155)
T ss_dssp CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence 45689999999999995 68899999999999999999999765 356899999999654 3455799999999999999
Q ss_pred CCCe-eeeecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeeecCC
Q 019087 287 VQAR-HIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSNAL 346 (346)
Q Consensus 287 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t~~~ 346 (346)
+++. +......+.|.....+|||.+||++++|+++++|||+||+|+|+|+|+|.++||+|
T Consensus 94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~ 154 (155)
T 2foj_A 94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 154 (155)
T ss_dssp SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence 8865 55666788898767889999999999999777899999999999999999999986
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.95 E-value=3.3e-28 Score=205.30 Aligned_cols=144 Identities=18% Similarity=0.298 Sum_probs=115.4
Q ss_pred ccCCCcEEEEEEcCccccccc--C--CCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCE
Q 019087 49 SGASPTHYTVKINSFSLLLKT--S--VEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWE 121 (346)
Q Consensus 49 ~~~~~~~~~~~I~nfs~~~~~--~--~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~ 121 (346)
..+..|+|+|+|+|||.+++. . +..++|++|.+| ||+|+|++||+|++ .+.++||||||.|++++.+ ..+|+
T Consensus 19 ~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~l~W~ 97 (178)
T 4gjh_A 19 GACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWP 97 (178)
T ss_dssp HCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGGGSCSS
T ss_pred CcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCcccCCc
Confidence 346789999999999998752 2 348999999999 99999999999987 4567999999999876432 35799
Q ss_pred EEEEEEEEEEeCCCCceeEEec--cccceeeecC----CCccccccceeeccccccCCCCceeCCEEEEEEEEEEeee
Q 019087 122 VYAVFRLFLLDQNKDNFLILQD--AMGAERRFHR----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKE 193 (346)
Q Consensus 122 ~~~~~~~~ll~~~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~ 193 (346)
+.|+|+|+|+||.++....... .....+.|.. ...+|||.+||++++|++|.++||+||+|+|+|+|.|.+.
T Consensus 98 v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 98 FRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp CCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred eEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 9999999999998765433210 0002456763 3568999999999999988899999999999999976543
No 5
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.94 E-value=1.7e-27 Score=218.96 Aligned_cols=180 Identities=23% Similarity=0.378 Sum_probs=136.4
Q ss_pred CCCcEEEEEEcCcccccccCCCeEEcCceEECCe---eEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEE
Q 019087 51 ASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFR 127 (346)
Q Consensus 51 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~---~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~ 127 (346)
+..|+|+|+|+|||.++...++.++|++|.+||| +|+|++||+|++ ++.++|||+||.|.... .|++.|+|+
T Consensus 4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~~~ 78 (312)
T 3hqi_A 4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK 78 (312)
T ss_dssp EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEEEE
T ss_pred eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEEEE
Confidence 4568999999999999644478999999999995 999999999987 55679999999998653 599999999
Q ss_pred EEEEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeeccCCcc-ceecccc
Q 019087 128 LFLLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKERSTGKG-ECLSMIK 206 (346)
Q Consensus 128 ~~ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~~~~~~-~~~~~i~ 206 (346)
|+|+||+++........ ..++|.. ..+|||.+||+|++|+++.+|||+||+|+|+|+|+|++......+ +....+.
T Consensus 79 ~~l~~~~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~ 155 (312)
T 3hqi_A 79 FSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK 155 (312)
T ss_dssp EEEECTTSCEEEEEECS--SCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCC
T ss_pred EEEEeCCCCcccccccC--CceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccC
Confidence 99999998766554322 5778885 468999999999999877889999999999999999986532111 1223445
Q ss_pred CCCCceEEEEEccccccC-CceeecCcEEeCCceEEE
Q 019087 207 DAPSIKHVWRIENFSKLR-SECCDSQVFNSGDQKWKI 242 (346)
Q Consensus 207 ~~~~~~~~~~I~nfs~l~-~~~~~S~~f~v~g~~w~l 242 (346)
.|++.. ..++..+. .....+.++.++|..+++
T Consensus 156 ~p~~~l----~~~l~~l~~~~~~~Dv~l~v~~~~f~~ 188 (312)
T 3hqi_A 156 VPECRL----ADELGGLWENSRFTDCCLCVAGQEFQA 188 (312)
T ss_dssp CCCCCH----HHHHHHHHHTTCSCCEEEEETTEEEEE
T ss_pred CCCchH----HHHHHHHHhCCCCCceEEEECCEEEeH
Confidence 555443 25566655 345666788898877553
No 6
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=1e-27 Score=204.92 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=113.9
Q ss_pred cCCCcEEEEEEcCcccccc---c-CCCeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEE
Q 019087 50 GASPTHYTVKINSFSLLLK---T-SVEKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEV 122 (346)
Q Consensus 50 ~~~~~~~~~~I~nfs~~~~---~-~~~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~ 122 (346)
.+..|+|+|+|+|||.+++ . .++.++|++|.+| ||+|+|++||+|++ .+.++||||||.+++++.+ ..+|++
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp~ 114 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF 114 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCceE
Confidence 4568999999999999875 2 3679999999999 99999999999987 4567899999999987543 357999
Q ss_pred EEEEEEEEEeCCCCceeEEec----c--ccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeec
Q 019087 123 YAVFRLFLLDQNKDNFLILQD----A--MGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER 194 (346)
Q Consensus 123 ~~~~~~~ll~~~~~~~~~~~~----~--~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~ 194 (346)
.|+|+|+|+||.++....... . ....+.|...+.+|||.+||++++|+ ++|||+||+|+|+|+|.|+..+
T Consensus 115 ~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 115 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred EEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence 999999999998764433211 0 00112233345789999999999999 5899999999999999887765
No 7
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.94 E-value=5.4e-27 Score=194.69 Aligned_cols=142 Identities=23% Similarity=0.294 Sum_probs=107.3
Q ss_pred CCCcEEEEEEcCcccccc--cCCC--eEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEE
Q 019087 51 ASPTHYTVKINSFSLLLK--TSVE--KYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVY 123 (346)
Q Consensus 51 ~~~~~~~~~I~nfs~~~~--~~~~--~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~ 123 (346)
...|+|+|+|+|||.+++ ..|+ .++|++|.+| ||+|+|++||+|++....++||||||.+++++.+ ..+|++.
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 357999999999999875 2466 8999999999 9999999999997622247899999999876543 4579999
Q ss_pred EEEEEEEEeCCCCce--eEEec--cccceeeecC-----CCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeec
Q 019087 124 AVFRLFLLDQNKDNF--LILQD--AMGAERRFHR-----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER 194 (346)
Q Consensus 124 ~~~~~~ll~~~~~~~--~~~~~--~~~~~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~ 194 (346)
|+|+|+|+||.+... ..... .......|.. ...+|||.+||++++|+ +++||+||+|+|+|+|.|+.+.
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~~ 159 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFDL 159 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC----
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeecC
Confidence 999999999987521 11100 0001223542 12479999999999999 6899999999999999998653
No 8
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.94 E-value=1.1e-26 Score=189.77 Aligned_cols=131 Identities=26% Similarity=0.477 Sum_probs=111.7
Q ss_pred CCCCceEEEEEccccccCC---ceeecCcEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEE
Q 019087 207 DAPSIKHVWRIENFSKLRS---ECCDSQVFNSGDQ---KWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFT 280 (346)
Q Consensus 207 ~~~~~~~~~~I~nfs~l~~---~~~~S~~f~v~g~---~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~ 280 (346)
....+.|+|+|+|||.+.+ +.+.|+.|.++|+ +|+|.+||+|+..++.+||||||+|... ..|+++|+|+
T Consensus 7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~ 82 (145)
T 3ivv_A 7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK 82 (145)
T ss_dssp CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEE
T ss_pred cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEE
Confidence 3456899999999999873 5799999999996 9999999999876667899999999874 3699999999
Q ss_pred EEEEeCCCCeee--eecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087 281 VRLLDQVQARHI--AGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV 342 (346)
Q Consensus 281 ~~l~~~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~ 342 (346)
|+|+||+++++. .....+.|. +..+|||.+||++++|++++++||+||+|+|+|+|+|+++
T Consensus 83 l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 83 FSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999987643 234567886 4678999999999999765689999999999999999864
No 9
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.93 E-value=7.1e-27 Score=199.67 Aligned_cols=140 Identities=21% Similarity=0.300 Sum_probs=111.4
Q ss_pred CCCcEEEEEEcCcccccc--cCCC--eEEcCceEE--CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEE
Q 019087 51 ASPTHYTVKINSFSLLLK--TSVE--KYETGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVY 123 (346)
Q Consensus 51 ~~~~~~~~~I~nfs~~~~--~~~~--~~~S~~f~~--gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~ 123 (346)
...|+|+|+|+|||.+++ ..|+ .++|++|.+ |||+|+|++||+|++ .+.++||||||.+.++..++ .+|++.
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~ 118 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 118 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence 568999999999999875 2344 699999999 999999999999986 45678999999998875443 689999
Q ss_pred EEEEEEEEeCCCCceeEEecc-ccceeeec----CCCccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087 124 AVFRLFLLDQNKDNFLILQDA-MGAERRFH----RLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK 192 (346)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~~~-~~~~~~F~----~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~ 192 (346)
|+|+|+|+||.++........ ......|. ....+|||.+||++++|++ .++||+||+|+|+|+|.|.+
T Consensus 119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 999999999998743221100 00123464 2346899999999999986 57999999999999998753
No 10
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.93 E-value=9.7e-27 Score=194.77 Aligned_cols=139 Identities=22% Similarity=0.314 Sum_probs=109.6
Q ss_pred CCCcEEEEEEcCccccccc--CCC--eEEcCceE--ECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCC-CCCEEE
Q 019087 51 ASPTHYTVKINSFSLLLKT--SVE--KYETGDFE--AGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQ-LGWEVY 123 (346)
Q Consensus 51 ~~~~~~~~~I~nfs~~~~~--~~~--~~~S~~f~--~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~~~ 123 (346)
...|+|+|+|+|||.+++. .++ .++|++|. +|||+|+|++||+|++ .+.++||||||.+.++..++ .+|++.
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~~ 94 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 94 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCceE
Confidence 4689999999999998752 355 39999996 7899999999999986 45579999999998865443 689999
Q ss_pred EEEEEEEEeCCCCceeEEec-cccceeeecC----CCccccccceeeccccccCCCCceeCCEEEEEEEEEEe
Q 019087 124 AVFRLFLLDQNKDNFLILQD-AMGAERRFHR----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVC 191 (346)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~~-~~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~ 191 (346)
|+|+|+|+||++........ .....+.|.. ...+|||.+||++++|+++ ++||+||+|+|+|+|+|.
T Consensus 95 ~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred EEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 99999999999865332210 0001235653 3578999999999999953 399999999999999774
No 11
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.93 E-value=8.5e-27 Score=198.86 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=111.0
Q ss_pred CCCcEEEEEEcCcccccc--cCCC--eEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEE
Q 019087 51 ASPTHYTVKINSFSLLLK--TSVE--KYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVY 123 (346)
Q Consensus 51 ~~~~~~~~~I~nfs~~~~--~~~~--~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~ 123 (346)
...|+|+|+|+|||.+++ ..|+ .++|++|.+| ||+|+|++||+|++ .+.++|||+||.+++++.+ ..+|++.
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~ 115 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK 115 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEE
Confidence 368999999999999974 2355 5999999999 99999999999987 4567999999999976543 3579999
Q ss_pred EEEEEEEEeCCCCceeEEecc--ccceeeecCC----CccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087 124 AVFRLFLLDQNKDNFLILQDA--MGAERRFHRL----KLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK 192 (346)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~~~--~~~~~~F~~~----~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~ 192 (346)
|+|+|+|+||.++........ ....+.|... +.+|||.+||++++|+ ++|||+||+|+|+|+|.|..
T Consensus 116 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred EEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence 999999999998754332110 0012457532 4689999999999999 46999999999999997644
No 12
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.92 E-value=2.7e-26 Score=193.51 Aligned_cols=135 Identities=24% Similarity=0.348 Sum_probs=112.1
Q ss_pred CCCceEEEEEccccccCCc-------eeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEE
Q 019087 208 APSIKHVWRIENFSKLRSE-------CCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATL-TPGSKIYA 277 (346)
Q Consensus 208 ~~~~~~~~~I~nfs~l~~~-------~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~ 277 (346)
...+.|+|+|+||+.+++. .+.|+.|.+| |++|+|.+||+|++.+.++||||||+|.+...+ ...|++.+
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a 100 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 100 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence 5578999999999998632 6899999999 999999999999887777899999999775432 24699999
Q ss_pred EEEEEEEeCCCCe-eeeec-----ceeeecC----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087 278 EFTVRLLDQVQAR-HIAGK-----ANFWFSA----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV 342 (346)
Q Consensus 278 ~~~~~l~~~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~ 342 (346)
+|+|+|+||+++. ++... ..+.|.. .+.+|||.+||++++|+++.+|||+||+|+|+|+|.|.+.
T Consensus 101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 9999999998753 33321 3456763 3568999999999999987789999999999999987643
No 13
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.92 E-value=8.4e-26 Score=197.71 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=111.4
Q ss_pred CCCcEEEEEEcCcccccc-c-CC--CeEEcCceEEC--CeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEEE
Q 019087 51 ASPTHYTVKINSFSLLLK-T-SV--EKYETGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEVY 123 (346)
Q Consensus 51 ~~~~~~~~~I~nfs~~~~-~-~~--~~~~S~~f~~g--G~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~~ 123 (346)
...|+|+|+|+|||.+++ . .| ..++|++|.+| ||+|+|++||+|++ .+.++|||+||.+++++.+ ..+|++.
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~~ 151 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK 151 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcEE
Confidence 478999999999999875 2 23 38999999999 99999999999987 4568999999999876543 4579999
Q ss_pred EEEEEEEEeCCCCceeEEecc--ccceeeecC----CCccccccceeeccccccCCCCceeCCEEEEEEEEEEee
Q 019087 124 AVFRLFLLDQNKDNFLILQDA--MGAERRFHR----LKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCK 192 (346)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~ 192 (346)
|+|+|+|+||.++........ ....+.|.. .+.+|||.+||++++|+ ++|||+||+|+|+|+|.|.+
T Consensus 152 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 152 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp CCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTT
T ss_pred EEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEccc
Confidence 999999999998754322110 002335642 34689999999999999 48999999999999998754
No 14
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.91 E-value=1.6e-25 Score=191.25 Aligned_cols=133 Identities=23% Similarity=0.344 Sum_probs=109.7
Q ss_pred CCCceEEEEEccccccCCc-------eeecCcEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 019087 208 APSIKHVWRIENFSKLRSE-------CCDSQVFNS--GDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYA 277 (346)
Q Consensus 208 ~~~~~~~~~I~nfs~l~~~-------~~~S~~f~v--~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~ 277 (346)
+..+.|+|+|+|||.+.+. .+.|+.|.+ ||++|+|.+||+|++.+.++|||+||++.+...++ ..|++.+
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 4678999999999998732 489999999 99999999999998776678999999998865544 5799999
Q ss_pred EEEEEEEeCCCCeeeeecc-----eeeec----CCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEe
Q 019087 278 EFTVRLLDQVQARHIAGKA-----NFWFS----ASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG 341 (346)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~-----~~~F~----~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~ 341 (346)
+|+|+|+||+++++..... ...|. ..+.+|||.+||++++|++ .+|||+||+|+|+|+|.|.+
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 9999999999875443221 12354 2356899999999999995 37999999999999998853
No 15
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.91 E-value=3.2e-25 Score=185.48 Aligned_cols=133 Identities=23% Similarity=0.340 Sum_probs=108.7
Q ss_pred CCCceEEEEEccccccCCc-------eeecCcEE--eCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 019087 208 APSIKHVWRIENFSKLRSE-------CCDSQVFN--SGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYA 277 (346)
Q Consensus 208 ~~~~~~~~~I~nfs~l~~~-------~~~S~~f~--v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~ 277 (346)
...+.|+|+|+|||.+++. .+.|+.|. ++|++|+|.+||+|++.+.++||||||+|.+...++ ..|++.+
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 3578999999999998632 38899995 899999999999998766678999999998765543 5799999
Q ss_pred EEEEEEEeCCCCeeeeecc-----eeeecC----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEe
Q 019087 278 EFTVRLLDQVQARHIAGKA-----NFWFSA----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG 341 (346)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~ 341 (346)
+|+|+|+||++.++..... .+.|.. .+.+|||.+||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus 96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 9999999999875443321 235653 3578999999999999973 4999999999999998753
No 16
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.91 E-value=4.2e-25 Score=188.80 Aligned_cols=134 Identities=20% Similarity=0.292 Sum_probs=110.1
Q ss_pred CCCceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 019087 208 APSIKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYA 277 (346)
Q Consensus 208 ~~~~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~ 277 (346)
...+.|+|+|+|||.+++ +.+.|+.|.+| |++|+|.+||+|++.+.++||||||.+.+++.+. ..|++.+
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a 116 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence 457899999999999863 47899999999 9999999999998877778999999998765432 4799999
Q ss_pred EEEEEEEeCCCCe-eeeec---------ceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeee
Q 019087 278 EFTVRLLDQVQAR-HIAGK---------ANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS 343 (346)
Q Consensus 278 ~~~~~l~~~~~~~-~~~~~---------~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t 343 (346)
+|+|+|+||.++. ++..+ ..+.|...+.+|||.+||++++|++ +|||+||+|+|+|+|.|+...
T Consensus 117 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC
T ss_pred EEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCC
Confidence 9999999998653 33221 1222334467899999999999996 799999999999999987643
No 17
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.90 E-value=2.4e-24 Score=178.69 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=103.0
Q ss_pred CCceEEEEEccccccCC-----c--eeecCcEEeC--CceEEEEEEeCCCCCC-CCCeEEEEEEecCCCCC-CCCCeEEE
Q 019087 209 PSIKHVWRIENFSKLRS-----E--CCDSQVFNSG--DQKWKIQLYPKGRRHG-TGTHLAMYLALADSATL-TPGSKIYA 277 (346)
Q Consensus 209 ~~~~~~~~I~nfs~l~~-----~--~~~S~~f~v~--g~~w~l~~yp~g~~~~-~~~~ls~~L~~~~~~~~-~~~w~~~~ 277 (346)
..+.|+|+|+|||.+++ + .+.|+.|.+| |++|+|.+||+|++.+ +++||||||++.+.+.+ ...|++.+
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 35789999999999863 2 7899999999 9999999999997654 36899999999875543 34699999
Q ss_pred EEEEEEEeCCCCe---eeeecc-----eeeecC-----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087 278 EFTVRLLDQVQAR---HIAGKA-----NFWFSA-----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV 342 (346)
Q Consensus 278 ~~~~~l~~~~~~~---~~~~~~-----~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~ 342 (346)
+++|+|+||.+.. +..... ...|.. ...+|||++||++++|++ +|||+||+|+|+|+|.|+.+
T Consensus 83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence 9999999998652 111111 123432 123799999999999995 79999999999999999865
No 18
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.90 E-value=1.2e-24 Score=185.54 Aligned_cols=131 Identities=21% Similarity=0.332 Sum_probs=108.3
Q ss_pred CCceEEEEEccccccCC-----c--eeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087 209 PSIKHVWRIENFSKLRS-----E--CCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE 278 (346)
Q Consensus 209 ~~~~~~~~I~nfs~l~~-----~--~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~ 278 (346)
..+.|+|+|+|||.++. + .+.|+.|.+| |++|+|.+||+|++.++++|||+||++.+++.+. ..|++.++
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 56899999999999862 2 4899999999 9999999999998777778999999998765443 46999999
Q ss_pred EEEEEEeCCCCe-eeeecc-----eeeecCC----CCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEe
Q 019087 279 FTVRLLDQVQAR-HIAGKA-----NFWFSAS----NPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHG 341 (346)
Q Consensus 279 ~~~~l~~~~~~~-~~~~~~-----~~~F~~~----~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~ 341 (346)
|+|+|+||.++. ++.... .+.|... +.+|||++||++++|++ +|||+||+|+|+|+|.|.+
T Consensus 118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 999999999863 433221 2457532 46899999999999987 5999999999999997754
No 19
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=206.65 Aligned_cols=137 Identities=18% Similarity=0.306 Sum_probs=112.5
Q ss_pred cCCCcEEEEEEcCcccccccCCCeEEcCceEECCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEE
Q 019087 50 GASPTHYTVKINSFSLLLKTSVEKYETGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSLQLGWEVYAVFRLF 129 (346)
Q Consensus 50 ~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~~~~w~~~~~~~~~ 129 (346)
....++|+|+|+|||.+++ .++|++|.+||++|+|++||+|+...+..+||||||.|.+. ..+.+|.+.|+|+|.
T Consensus 27 ~~~~~~~~w~I~nfS~~~~----~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~ 101 (522)
T 2f1z_A 27 WRSEATFQFTVERFSRLSE----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLK 101 (522)
T ss_dssp CCSEEEEEEEESSCTTCCS----CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEE
T ss_pred ccCCcEEEEEECChhhcCC----ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEE
Confidence 3567999999999999963 89999999999999999999997522357899999999876 345689999999999
Q ss_pred EEeCCCCceeEEeccccceeeecCCCccccccceeeccccccCCCCceeCCEEEEEEEEEEeeec
Q 019087 130 LLDQNKDNFLILQDAMGAERRFHRLKLEWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVCKER 194 (346)
Q Consensus 130 ll~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~~fl~dD~l~i~~~v~v~~~~ 194 (346)
|+|+.++.....+. ..+.|.....+|||.+||++++|.++++|||+||+++|+|+|+|..+.
T Consensus 102 l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 102 IINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp ECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred EEcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence 99998765544433 578898767889999999999998888999999999999999996543
No 20
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.88 E-value=6.7e-24 Score=185.59 Aligned_cols=133 Identities=21% Similarity=0.323 Sum_probs=109.7
Q ss_pred CCceEEEEEccccccCC-------ceeecCcEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 019087 209 PSIKHVWRIENFSKLRS-------ECCDSQVFNSG--DQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKIYAE 278 (346)
Q Consensus 209 ~~~~~~~~I~nfs~l~~-------~~~~S~~f~v~--g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~ 278 (346)
..+.|+|+|+|||.++. ..+.|+.|.+| |++|+|.+||+|++.+.++|||+||++.+++.++ ..|++.++
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~ 153 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 153 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEEE
Confidence 57899999999999863 26899999999 9999999999998877778999999998765443 47999999
Q ss_pred EEEEEEeCCCCe-eeeec-----ceeeecC----CCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeee
Q 019087 279 FTVRLLDQVQAR-HIAGK-----ANFWFSA----SNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVS 343 (346)
Q Consensus 279 ~~~~l~~~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t 343 (346)
|+|+|+||.+++ ++... ..+.|.. .+.+|||++||++++|++ +|||+||+|+|+|+|.|.+..
T Consensus 154 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~ 226 (228)
T 1flk_A 154 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 226 (228)
T ss_dssp EEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSC
T ss_pred EEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccccc
Confidence 999999998764 33221 1234642 346899999999999997 799999999999999886543
No 21
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.88 E-value=1.9e-22 Score=185.35 Aligned_cols=128 Identities=27% Similarity=0.480 Sum_probs=106.3
Q ss_pred CceEEEEEccccccC---CceeecCcEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 019087 210 SIKHVWRIENFSKLR---SECCDSQVFNSGDQ---KWKIQLYPKGRRHGTGTHLAMYLALADSATLTPGSKIYAEFTVRL 283 (346)
Q Consensus 210 ~~~~~~~I~nfs~l~---~~~~~S~~f~v~g~---~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l 283 (346)
.+.|+|+|+||+.++ ++.+.|+.|.+||+ +|+|.+||+|++.++++|+|+||.|.... .|++.++|+|+|
T Consensus 6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~----~~~v~a~~~~~l 81 (312)
T 3hqi_A 6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI 81 (312)
T ss_dssp EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC----C-CEEEEEEEEE
T ss_pred EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC----CCcEEEEEEEEE
Confidence 368999999999986 56789999999995 99999999998776778999999998642 589999999999
Q ss_pred EeCCCCeeee--ecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEee
Q 019087 284 LDQVQARHIA--GKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGV 342 (346)
Q Consensus 284 ~~~~~~~~~~--~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~ 342 (346)
+|++++.... ....+.|.. +.+|||.+||+|++|+++.+|||+||+|+|+|+|.|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 82 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp ECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 9999876432 245678874 468999999999999877789999999999999999953
No 22
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=197.59 Aligned_cols=135 Identities=13% Similarity=0.256 Sum_probs=112.9
Q ss_pred CCCceEEEEEccccccCCceeecCcEEeCCceEEEEEEeCCCCCC-CCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 019087 208 APSIKHVWRIENFSKLRSECCDSQVFNSGDQKWKIQLYPKGRRHG-TGTHLAMYLALADSATLTPGSKIYAEFTVRLLDQ 286 (346)
Q Consensus 208 ~~~~~~~~~I~nfs~l~~~~~~S~~f~v~g~~w~l~~yp~g~~~~-~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~ 286 (346)
...+.|+|+|+|||.+.+ .+.|+.|.+||++|+|.+||+|+..+ .++|||+||.|... ..+..|++.|+|+|+|+|+
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~ 105 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 105 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence 456899999999999875 88899999999999999999997543 56799999999876 4456799999999999999
Q ss_pred CCCe-eeeecceeeecCCCCCCChhcccCccccCCCCCCceeCCEEEEEEEEEEEeeec
Q 019087 287 VQAR-HIAGKANFWFSASNPESGWARYVSFAYFNNPGNGCLVKDVCSVEAEVTVHGVSN 344 (346)
Q Consensus 287 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~yl~dD~l~i~~~V~i~~~t~ 344 (346)
.++. +......+.|.....+|||.+||++++|.++++|||+||+++|+|+|.|...+|
T Consensus 106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g 164 (522)
T 2f1z_A 106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 164 (522)
T ss_dssp TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence 8753 556677788987778899999999999987678999999999999999977665
No 23
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.47 E-value=9.8e-14 Score=135.40 Aligned_cols=139 Identities=20% Similarity=0.284 Sum_probs=106.7
Q ss_pred cccCCCcEEEEEEcCcccccccCCCeEEcCceEE-CCeeEEEEEEeCCCcCCCCCCcEEEEEEecCCCCC-CCCCEE-EE
Q 019087 48 ISGASPTHYTVKINSFSLLLKTSVEKYETGDFEA-GGYKWKLVLYPAGNKSKNVKEHISVYLAMANTSSL-QLGWEV-YA 124 (346)
Q Consensus 48 ~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~-gG~~W~i~~yp~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~~-~~ 124 (346)
+.+..+..+.|+|.||+++.+..+..++||+|+. .||+++|.+||++ ..|+|||++|++++.+ .+.|++ .-
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~~ 473 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPWQ 473 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred EeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCCC
Confidence 3556788999999999999875577899999974 5999999999875 4689999999998664 578999 46
Q ss_pred EEEEEEEeCCCCceeEEec--cc---------------------cceeeecC-----CCccccccceeeccccccCCCCc
Q 019087 125 VFRLFLLDQNKDNFLILQD--AM---------------------GAERRFHR-----LKLEWGFDEFIPIKAFNDASNGF 176 (346)
Q Consensus 125 ~~~~~ll~~~~~~~~~~~~--~~---------------------~~~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~~f 176 (346)
+++|.|+||+++....+.. +. .....|.. .+.+|||..||+++.|. +..|
T Consensus 474 q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~f 551 (592)
T 4gwm_A 474 QATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRDF 551 (592)
T ss_dssp EEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STTS
T ss_pred EEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--hcCc
Confidence 8999999998764322110 00 00001111 13468999999999999 6789
Q ss_pred eeCCEEEEEEEEEEeeec
Q 019087 177 LLEDTCVFGAEVFVCKER 194 (346)
Q Consensus 177 l~dD~l~i~~~v~v~~~~ 194 (346)
|+||.|+|.+.|.-+...
T Consensus 552 iK~d~~~i~~~~eD~~~l 569 (592)
T 4gwm_A 552 IKGDDVYILLTVEDISHL 569 (592)
T ss_dssp SBTTBEEEEEEEEECGGG
T ss_pred ccCCeEEEEEEEEeCccc
Confidence 999999999999777665
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.33 E-value=1.8e-12 Score=126.47 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=98.6
Q ss_pred CCCceEEEEEccccccCC---ceeecCcEE-eCCceEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCCeE-EEEEEE
Q 019087 208 APSIKHVWRIENFSKLRS---ECCDSQVFN-SGDQKWKIQLYPKGRRHGTGTHLAMYLALADSATLT-PGSKI-YAEFTV 281 (346)
Q Consensus 208 ~~~~~~~~~I~nfs~l~~---~~~~S~~f~-v~g~~w~l~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~-~~~~~~ 281 (346)
-+++.+.|+|+||++++. ..++|+.|. ..|++|+|.+|+++ +.++|+|+++.+++++. ..|++ .-+++|
T Consensus 403 G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~ 477 (592)
T 4gwm_A 403 TRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATM 477 (592)
T ss_dssp SCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEE
T ss_pred CCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEE
Confidence 456789999999999883 478899775 67999999999876 36999999999977654 77999 578999
Q ss_pred EEEeCCCCeeeeecceeeec---------------------------C-----CCCCCChhcccCccccCCCCCCceeCC
Q 019087 282 RLLDQVQARHIAGKANFWFS---------------------------A-----SNPESGWARYVSFAYFNNPGNGCLVKD 329 (346)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~F~---------------------------~-----~~~~~G~~~fi~~~~L~~~~~~yl~dD 329 (346)
.|++|+.+....+.....|. . ++.+|||..||+++.|+. +.||+||
T Consensus 478 ~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~d 555 (592)
T 4gwm_A 478 TLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKGD 555 (592)
T ss_dssp EECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBTT
T ss_pred EEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccCC
Confidence 99999865311112222221 1 123689999999999986 6799999
Q ss_pred EEEEEEEEEEEe
Q 019087 330 VCSVEAEVTVHG 341 (346)
Q Consensus 330 ~l~i~~~V~i~~ 341 (346)
.|+|.++|+-+.
T Consensus 556 ~~~i~~~~eD~~ 567 (592)
T 4gwm_A 556 DVYILLTVEDIS 567 (592)
T ss_dssp BEEEEEEEEECG
T ss_pred eEEEEEEEEeCc
Confidence 999999997653
No 25
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=49.52 E-value=35 Score=24.57 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=21.5
Q ss_pred CChhcccCccccCCCCCCceeCCEEEE------EEEEEEEeeecC
Q 019087 307 SGWARYVSFAYFNNPGNGCLVKDVCSV------EAEVTVHGVSNA 345 (346)
Q Consensus 307 ~G~~~fi~~~~L~~~~~~yl~dD~l~i------~~~V~i~~~t~~ 345 (346)
-||.+|+.-..|+. +|.|++ ...|.|...++|
T Consensus 67 ~GW~~Fv~~~~L~~-------GD~lvF~~~~~~~f~V~If~~s~C 104 (104)
T 1yel_A 67 VGWENFVKDNNLED-------GKYLQFIYDRDRTFYVIIYGHNMC 104 (104)
T ss_dssp TTHHHHHHHHTCCT-------TCEEEEEECSSSEEEEEEECSSCC
T ss_pred cChHHHHHHcCCCC-------CCEEEEEEcCCCeEEEEEECCCCC
Confidence 49999999888886 333333 245777766654
No 26
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=33.13 E-value=11 Score=28.63 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=22.9
Q ss_pred ccCCCcEEEEEEcCcccccccCCCeEEcCceEE
Q 019087 49 SGASPTHYTVKINSFSLLLKTSVEKYETGDFEA 81 (346)
Q Consensus 49 ~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~ 81 (346)
+....|-+.|+|.+|+..+. .|..+.|-.|.+
T Consensus 7 pv~~~gd~vwkIs~F~~RKp-eGty~nsvsFnI 38 (133)
T 3v0r_A 7 PVTTEGDYVWKISEFYGRKP-EGTYYNSLGFNI 38 (133)
T ss_dssp SSCCCCTTEEEEEEEEEEET-TSSSCSEEEEEE
T ss_pred ccccCCceEEEeeeeeeEcC-CCCceeeEEEEE
Confidence 44567899999999998864 255566666644
Done!