BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019088
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 28/106 (26%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+ +V +GTP ++ + DTGS LW+ C+ C G + T +DP++SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSRQTKYDPNQSSTYQADG 70
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQL 188
RT + ++YGDGSS SG +D + L
Sbjct: 71 ------RT----------------WSISYGDGSSASGILAKDNVNL 94
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 28/106 (26%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+ +V +GTP ++ + DTGS LW+ C+ C G T +DP++SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSGQTKYDPNQSSTYQADG 70
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQL 188
RT + ++YGDGSS SG +D + L
Sbjct: 71 ------RT----------------WSISYGDGSSASGILAKDNVNL 94
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
YF K+ +GTP E+ V DTGS LWV C KS++ FDP KSST
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYC-----KSNVCKNHHRFDPRKSST 62
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 61/147 (41%), Gaps = 32/147 (21%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y V +GTP ++Y+ DTGS WV GC S+ + FDPS SST
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDN----SEGCVGKRFFDPSSSST----- 70
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
F T YN +TYG G + YF RD I + A+ +T
Sbjct: 71 ----FKETDYNLN-------------ITYGTGGANGIYF-RDSITVGGATVKQQTLAYVD 112
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILG 229
+V G QS D ++ +DGI G
Sbjct: 113 NVS-GPTAEQSPD----SELFLDGIFG 134
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 93
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 94 CSD---HNQFNPDDSSTFEATSQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 141
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 142 NQIFGLSETEPGSFLYY--APFDGILGL 167
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 93
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 94 CSD---HNQFNPDDSSTFEATXQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 141
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 142 NQIFGLSETEPGSFLYY--APFDGILGL 167
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 98/266 (36%), Gaps = 54/266 (20%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+T + LGTP + V +DTGS LWV C G +A
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC------------------------GSLA 50
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS---GNLKTAP 199
C F + Y++ S E+ + YG G S GY +D + + + + A
Sbjct: 51 C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 200 LNSSVIFGCGNRQSGDLGSSTDA-AVDGILGFXXXXXXXXXXXXXXXXVRKEFAHCL-DV 257
+ F G + G LG D +VD ++ K FA L D
Sbjct: 107 SEPGLTFAFG-KFDGILGLGYDTISVDKVV------PPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 258 VK---GGGIFAIGDVVSPKVK---TTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
K GG G + K K T V ++ V E + +G +L +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAEL--------E 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLSQ 337
G ID+GT+L LP L +++ ++
Sbjct: 212 SHGAAIDTGTSLITLPSGLAEMINAE 237
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 98/266 (36%), Gaps = 54/266 (20%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+T + LGTP + V +DTGS LWV C G +A
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC------------------------GSLA 50
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS---GNLKTAP 199
C F + Y++ S E+ + YG G S GY +D + + + + A
Sbjct: 51 C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 200 LNSSVIFGCGNRQSGDLGSSTDA-AVDGILGFXXXXXXXXXXXXXXXXVRKEFAHCL-DV 257
+ F G + G LG D +VD ++ K FA L D
Sbjct: 107 SEPGLTFAFG-KFDGILGLGYDTISVDKVV------PPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 258 VK---GGGIFAIGDVVSPKVK---TTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
K GG G + K K T V ++ V E + +G +L +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAEL--------E 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLSQ 337
G ID+GT+L LP L +++ ++
Sbjct: 212 SHGAAIDTGTSLITLPSGLAEMINAE 237
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 98/266 (36%), Gaps = 54/266 (20%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y+T + LGTP + V +DTGS LWV C G +A
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC------------------------GSLA 50
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS---GNLKTAP 199
C F + Y++ S E+ + YG G S GY +D + + + + A
Sbjct: 51 C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 200 LNSSVIFGCGNRQSGDLGSSTDA-AVDGILGFXXXXXXXXXXXXXXXXVRKEFAHCL-DV 257
+ F G + G LG D +VD ++ K FA L D
Sbjct: 107 SEPGLTFAFG-KFDGILGLGYDTISVDKVV------PPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 258 VK---GGGIFAIGDVVSPKVK---TTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
K GG G + K K T V ++ V E + +G +L +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAEL--------E 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLSQ 337
G ID+GT+L LP L +++ ++
Sbjct: 212 SHGAAIDTGTSLITLPSGLAEMINAE 237
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATSQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATSQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
YF K+ LGTP E+ V DTGS WV C KS+ FDP KSST
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYC-----KSNACKNHQRFDPRKSST 65
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATSQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
YF K+ LGTP E+ V DTGS WV C KS+ FDP KSST
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYC-----KSNACKNHQRFDPRKSST 65
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATXQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 71
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS +A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS------------------------LA 49
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
CSD +N S E +TYG GS T G D +Q+ S ++
Sbjct: 50 CSD---HNQFNPDDSSTFEATXQELSITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSFLYY--APFDGILGL 123
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 64
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 68
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 71
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 114
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 67
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 71
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ ++G+GTP + V DTGS +WV + CSR T + LFD S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC---VYHKLFDASDSSS 71
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 58/148 (39%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS + F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNH-----NRFNPEDSST----- 63
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
Y S S V +TYG GS T G D +Q+ S ++
Sbjct: 64 -------------YQSTSETVS----ITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSF--LYYAPFDGILGL 123
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 58/148 (39%), Gaps = 38/148 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
YF +G+GTP ++ V DTGS LWV CS + F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNH-----NRFNPEDSST----- 63
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
Y S S V +TYG GS T G D +Q+ S ++
Sbjct: 64 -------------YQSTSETVS----ITYGTGSMT-GILGYDTVQVGGIS--------DT 97
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGF 230
+ IFG + G A DGILG
Sbjct: 98 NQIFGLSETEPGSF--LYYAPFDGILGL 123
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 26/103 (25%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y V +GTP ++ + DTGS WV GC TKS+ + FDPS SST
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGC----TKSEGCVGSRFFDPSASST----- 70
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDI 185
F T YN +TYG G + YF I
Sbjct: 71 ----FKATNYNLN-------------ITYGTGGANGLYFEDSI 96
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWV---NCAGCSRCPTKSDLGIKLTLFDPSKSSTSG 139
YF ++G+GTP ++ V DTGS +LWV C C S +++ S SST
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHS-------MYESSDSSTYK 67
Query: 140 E 140
E
Sbjct: 68 E 68
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 41 AGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQV 100
+GGE + LS + G ++A + YF ++G+GTP ++ V
Sbjct: 21 SGGEEQPLLSGANPLRSEEEGDIVALKNY---------MNAQYFGEIGVGTPPQKFTVIF 71
Query: 101 DTGSDLLWVNCAGC 114
DTGS LWV A C
Sbjct: 72 DTGSSNLWVPSAKC 85
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
YF ++ +GTP + V DTGS LWV C +S + F+PS+SST
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYC-----QSQACTSHSRFNPSESST 63
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR 116
Y+ ++G+GTP + V DTGS LWV CSR
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSR 50
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
YF + +G+P + V DTGS LWV C+ K+ + F PS+SST
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTH-----SRFQPSQSST 74
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 96/268 (35%), Gaps = 53/268 (19%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + +G+ + V VDTGS LWV T SD
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQ------------------- 54
Query: 143 CSDNFCRT--TYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQL------NQASGN 194
+ +FC+ TY+ S S + + + YGDGSS+ G +D + NQ +
Sbjct: 55 -TADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLAD 113
Query: 195 LKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXXXXVRKEFAHC 254
+ + ++ I G G + + GS + V + +
Sbjct: 114 VDSTSIDQG-ILGVGYKTNEAGGSYDNVPV-----------TLKKQGVIAKNAYSLYLNS 161
Query: 255 LDVVKGGGIFAIGDVVSPKVKTTPM---VPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
D G IF G V + K + + V + + L VEV G ++ D
Sbjct: 162 PDAATGQIIF--GGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT--------D 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLSQFR 339
++DSGTT+ YL L D ++ F
Sbjct: 212 NVDVLLDSGTTITYLQQDLADQIIKAFN 239
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
Y+ + +GTP + + V DTGS LWV+ + CS + F P +SST
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNH-----NKFKPRQSST 63
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 96/268 (35%), Gaps = 53/268 (19%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + +G+ + V VDTGS LWV T SD
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQ------------------- 54
Query: 143 CSDNFCRT--TYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQL------NQASGN 194
+ +FC+ TY+ S S + + + YGDGSS+ G +D + NQ +
Sbjct: 55 -TADFCKQKGTYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLAD 113
Query: 195 LKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXXXXVRKEFAHC 254
+ + ++ I G G + + GS + V + +
Sbjct: 114 VDSTSIDQG-ILGVGYKTNEAGGSYDNVPV-----------TLKKQGVIAKNAYSLYLNS 161
Query: 255 LDVVKGGGIFAIGDVVSPKVKTTPM---VPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
D G IF G V + K + + V + + L VEV G ++ D
Sbjct: 162 PDSATGQIIF--GGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT--------D 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLSQFR 339
++DSGTT+ YL L D ++ F
Sbjct: 212 NVDVLLDSGTTITYLQQDLADQIIKAFN 239
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 36/191 (18%)
Query: 78 SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDP----- 132
++T Y T + TP + VD G LWV+C D + + P
Sbjct: 17 ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDC----------DQNYVSSTYRPVRCRT 66
Query: 133 SKSSTSGEIACSDNFCRTTYNNRYPSCSP---GVRCEYVVTYGDGSSTSGYFVRDIIQLN 189
S+ S SG IAC D F N P C+ GV E V ++T G D++ +
Sbjct: 67 SQCSLSGSIACGDCF-----NGPRPGCNNNTCGVFPENPVI---NTATGGEVAEDVVSVE 118
Query: 190 ----QASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXXX 245
+SG + T P IF C L + + V G+ G
Sbjct: 119 STDGSSSGRVVTVP---RFIFSCA---PTSLLQNLASGVVGMAGLGRTRIALPSQFASAF 172
Query: 246 XVRKEFAHCLD 256
+++FA CL
Sbjct: 173 SFKRKFAMCLS 183
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 36/191 (18%)
Query: 78 SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDP----- 132
++T Y T + TP + VD G LWV+C D + + P
Sbjct: 17 ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDC----------DQNYVSSTYRPVRCRT 66
Query: 133 SKSSTSGEIACSDNFCRTTYNNRYPSCSP---GVRCEYVVTYGDGSSTSGYFVRDIIQLN 189
S+ S SG IAC D F N P C+ GV E V ++T G D++ +
Sbjct: 67 SQCSLSGSIACGDCF-----NGPRPGCNNNTCGVFPENPVI---NTATGGEVAEDVVSVE 118
Query: 190 ----QASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFXXXXXXXXXXXXXXX 245
+SG + T P IF C L + + V G+ G
Sbjct: 119 STDGSSSGRVVTVP---RFIFSCA---PTSLLQNLASGVVGMAGLGRTRIALPSQFASAF 172
Query: 246 XVRKEFAHCLD 256
+++FA CL
Sbjct: 173 SFKRKFAMCLS 183
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 29/127 (22%)
Query: 66 SIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGI 125
SI L L G PS Y +KV +G+ + V +DTGS WV ++C D
Sbjct: 2 SISLSLINEG-PS----YASKVSVGSNKQQQTVIIDTGSSDFWV-VDSNAQCGKGVDCKS 55
Query: 126 KLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDI 185
T F PS SS+ Y N + + + YGDGS++ G + +D
Sbjct: 56 SGT-FTPSSSSS--------------YKN--------LGAAFTIRYGDGSTSQGTWGKDT 92
Query: 186 IQLNQAS 192
+ +N S
Sbjct: 93 VTINGVS 99
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTS 138
Y T V +GTP + DTGS LWV S T S+ + T++ PSKS+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV----FSSETTASE--VXQTIYTPSKSTTA 66
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTS 138
Y T V +GTP + DTGS LWV S T S+ + T++ PSKS+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV----FSSETTASE--VXQTIYTPSKSTTA 66
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + +G+ ++ V VDTGS LWV D + P +S+
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWV-----------PDASVTCDKPRPGQSA------ 56
Query: 143 CSDNFCRTT--YNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS 192
+FC+ Y + + S + + + YGDGSS+ G +D + AS
Sbjct: 57 ---DFCKGKGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGAS 105
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 22/106 (20%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + +G+ + V +DTGS LWV +D ++T SG+
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWV---------VDTDAECQVTY--------SGQ-- 54
Query: 143 CSDNFCRT--TYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDII 186
++NFC+ T++ S + + ++ + YGD +S+ G F +D +
Sbjct: 55 -TNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLTSSQGSFYKDTV 99
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 32/116 (27%)
Query: 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSS 136
A +Y+ + +G ++ DTGS LWV A C+ C TK+ L+D +KS
Sbjct: 19 ANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKN-------LYDSNKSK 71
Query: 137 TSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS 192
T Y V YV + SG+F +DI+ + S
Sbjct: 72 T------------------YEKDGTKVEMNYV-----SGTVSGFFSKDIVTIANLS 104
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTS 138
Y T V +GTP + DTGS LWV S T S++ + T++ PSKS+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV----FSSETTASEVDGQ-TIYTPSKSTTA 67
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTS 138
Y T V +GTP + DTGS LWV S T S++ + T++ PSKS+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWV----FSSETTASEVDGQ-TIYTPSKSTTA 67
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGC 114
Y+ ++G+GTP + V DTGS LWV C
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHC 46
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 285 HYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVL 335
+Y + + ++E+GG L+L + I+DSGTTL LP ++D V+
Sbjct: 196 YYQIEILKLEIGGQSLNLDCREY---NADKAIVDSGTTLLRLPQKVFDAVV 243
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 76 HPS--ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWV 109
HPS A Y T V +GTP + DTGS LWV
Sbjct: 8 HPSDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWV 43
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 23/106 (21%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
Y + + +G+ + V +DTGS LWV P D S +G+
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWV--------P------------DSQVSCQAGQ-G 52
Query: 143 CSDNFCRT--TYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDII 186
NFC+ TY+ S S + + + YGDG+++ G + +D I
Sbjct: 53 QDPNFCKNEGTYSPSSSSSSQNLNSPFSIEYGDGTTSQGTWYKDTI 98
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNC 111
+TGL++ + TP + V VD + LWVNC
Sbjct: 19 STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNC 51
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 72/207 (34%), Gaps = 57/207 (27%)
Query: 39 FKAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATG--------------LYF 84
FK +R L +K H + + + S++ G + G +++
Sbjct: 84 FKVENAHDRILKTIKTHKLKNY--IKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFY 141
Query: 85 TKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSSTSGEIA 142
+G + +DTGS LWV C+ C TK L+D SKS T
Sbjct: 142 GDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKH-------LYDSSKSRT----- 189
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
Y V YV + SG+F +D++ + GNL
Sbjct: 190 -------------YEKDGTKVEMNYV-----SGTVSGFFSKDLVTV----GNLSLPYKFI 227
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILG 229
VI +G + T + DGILG
Sbjct: 228 EVI-----DTNGFEPTYTASTFDGILG 249
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 167 YVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCG-NRQSGDLGSSTD 221
Y + +G +ST YF +DI+ Q N ++ + ++ + +R S LG S D
Sbjct: 433 YRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHNEDRTSSKLGKSAD 488
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 72/207 (34%), Gaps = 57/207 (27%)
Query: 39 FKAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATG--------------LYF 84
FK +R L +K H + + + S++ G + G +++
Sbjct: 11 FKVENAHDRILKTIKTHKLKNY--IKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFY 68
Query: 85 TKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSSTSGEIA 142
+G + +DTGS LWV C+ C TK L+D SKS T
Sbjct: 69 GDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKH-------LYDSSKSRT----- 116
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
Y V YV + SG+F +D++ + GNL
Sbjct: 117 -------------YEKDGTKVEMNYV-----SGTVSGFFSKDLVTV----GNLSLPYKFI 154
Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILG 229
VI +G + T + DGILG
Sbjct: 155 EVI-----DTNGFEPTYTASTFDGILG 176
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 32/116 (27%)
Query: 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSS 136
A +++ + +GT + DTGS LWV C C TK L+D S S
Sbjct: 12 ANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKH-------LYDASASK 64
Query: 137 TSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS 192
+ + G + E ++YG G + GYF +D+I L S
Sbjct: 65 SYEK--------------------DGTKVE--ISYGSG-TVRGYFSKDVISLGDLS 97
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 167 YVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCG-NRQSGDLGSSTD 221
Y + +G +ST YF +DI+ Q N ++ + ++ + +R S LG S D
Sbjct: 433 YRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHDEDRTSSKLGKSAD 488
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNC 111
Y VG+G+P Y + VDTGS W+
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGA 42
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 43/154 (27%)
Query: 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSS 136
A +++ + +G ++ + DTGS LWV C+ C TK L+D SKS
Sbjct: 12 ANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKH-------LYDSSKSK 64
Query: 137 TSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLK 196
+ + G + E +TYG G + G+F +D++ L S K
Sbjct: 65 SYEK--------------------DGTKVE--ITYGSG-TVRGFFSKDLVTLGYLSLPYK 101
Query: 197 TAPLNSSVIFGCGNRQSGDLGS-STDAAVDGILG 229
+ + DL T A DGILG
Sbjct: 102 FIEVT----------DTDDLEPLYTAAEFDGILG 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,698,796
Number of Sequences: 62578
Number of extensions: 410602
Number of successful extensions: 927
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 165
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)