Query 019088
Match_columns 346
No_of_seqs 243 out of 1662
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:34:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.3E-48 2.9E-53 376.5 34.0 298 29-343 23-338 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 2.9E-45 6.3E-50 351.2 26.5 250 74-341 38-297 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 4.9E-43 1.1E-47 339.8 25.9 224 74-340 112-355 (482)
4 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.2E-41 9.1E-46 314.7 25.6 235 81-338 2-257 (326)
5 cd05478 pepsin_A Pepsin A, asp 100.0 4.2E-41 9E-46 313.7 24.9 217 77-341 5-235 (317)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 4.8E-41 1E-45 314.4 24.0 215 78-340 2-234 (325)
7 cd05477 gastricsin Gastricsins 100.0 8.3E-41 1.8E-45 311.8 23.5 216 80-342 1-231 (318)
8 cd05486 Cathespin_E Cathepsin 100.0 1.3E-40 2.7E-45 310.3 21.9 210 83-340 1-226 (316)
9 cd06098 phytepsin Phytepsin, a 100.0 2.5E-40 5.5E-45 308.3 23.3 212 77-335 5-233 (317)
10 cd05485 Cathepsin_D_like Cathe 100.0 5.6E-40 1.2E-44 307.4 23.5 220 76-340 5-238 (329)
11 cd06097 Aspergillopepsin_like 100.0 6.9E-40 1.5E-44 300.0 22.0 211 83-338 1-224 (278)
12 cd05488 Proteinase_A_fungi Fun 100.0 1.6E-39 3.6E-44 303.3 24.4 216 77-341 5-234 (320)
13 cd05487 renin_like Renin stimu 100.0 2.6E-39 5.6E-44 302.7 23.3 219 77-341 3-236 (326)
14 PTZ00147 plasmepsin-1; Provisi 100.0 8.4E-39 1.8E-43 308.1 25.5 211 77-340 134-360 (453)
15 cd05473 beta_secretase_like Be 100.0 3.7E-38 8E-43 299.2 24.8 218 81-342 2-241 (364)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.4E-38 7.3E-43 303.3 24.7 210 77-340 133-359 (450)
17 cd05472 cnd41_like Chloroplast 100.0 6E-38 1.3E-42 290.2 22.6 195 82-343 1-202 (299)
18 cd05471 pepsin_like Pepsin-lik 100.0 2.5E-37 5.3E-42 283.2 23.4 218 83-343 1-233 (283)
19 cd05489 xylanase_inhibitor_I_l 100.0 8.4E-37 1.8E-41 288.4 23.5 233 89-344 2-261 (362)
20 cd05475 nucellin_like Nucellin 100.0 9.2E-37 2E-41 278.5 22.3 191 81-331 1-196 (273)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.4E-35 5.2E-40 268.1 19.9 184 82-331 1-195 (265)
22 PF00026 Asp: Eukaryotic aspar 100.0 2.1E-35 4.5E-40 275.0 15.6 212 82-341 1-228 (317)
23 cd05474 SAP_like SAPs, pepsin- 100.0 9.8E-34 2.1E-38 261.4 20.1 185 82-342 2-208 (295)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.8E-31 6E-36 223.6 16.8 162 83-268 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 2.3E-23 5E-28 163.6 12.1 108 85-230 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 98.7 3.2E-08 7E-13 83.0 7.8 60 285-344 1-61 (161)
27 cd05483 retropepsin_like_bacte 97.9 2.7E-05 5.9E-10 58.7 6.6 93 82-232 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.1 0.03 6.6E-07 44.4 7.6 31 79-111 8-38 (121)
29 PF13650 Asp_protease_2: Aspar 95.5 0.12 2.5E-06 38.0 8.4 26 85-112 1-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.0 0.48 1E-05 37.6 8.7 33 79-113 13-45 (124)
31 cd05484 retropepsin_like_LTR_2 93.3 0.098 2.1E-06 39.0 3.4 29 83-113 1-29 (91)
32 TIGR02281 clan_AA_DTGA clan AA 91.6 0.35 7.6E-06 38.3 4.8 36 283-334 9-44 (121)
33 PF13975 gag-asp_proteas: gag- 91.2 0.37 8.1E-06 34.3 4.1 35 79-115 5-39 (72)
34 PF11925 DUF3443: Protein of u 91.2 4.3 9.2E-05 38.2 11.9 57 170-233 83-149 (370)
35 PF13650 Asp_protease_2: Aspar 89.3 0.51 1.1E-05 34.5 3.7 29 293-334 3-31 (90)
36 cd05484 retropepsin_like_LTR_2 88.8 0.73 1.6E-05 34.2 4.2 30 293-335 5-34 (91)
37 cd05483 retropepsin_like_bacte 88.5 0.9 2E-05 33.5 4.6 30 292-334 6-35 (96)
38 PF13975 gag-asp_proteas: gag- 86.4 1.3 2.7E-05 31.5 4.0 29 293-334 13-41 (72)
39 PF00077 RVP: Retroviral aspar 84.8 1.4 2.9E-05 33.2 3.8 28 84-113 7-34 (100)
40 cd06095 RP_RTVL_H_like Retrope 83.8 1.3 2.8E-05 32.6 3.2 29 293-334 3-31 (86)
41 COG3577 Predicted aspartyl pro 80.2 6.5 0.00014 33.9 6.4 74 79-193 102-175 (215)
42 cd06095 RP_RTVL_H_like Retrope 79.1 2.4 5.3E-05 31.1 3.2 26 86-113 2-27 (86)
43 cd05479 RP_DDI RP_DDI; retrope 77.3 3.2 6.9E-05 32.8 3.6 29 293-334 21-49 (124)
44 COG3577 Predicted aspartyl pro 77.1 5.1 0.00011 34.5 4.9 37 282-334 102-138 (215)
45 PF00077 RVP: Retroviral aspar 75.5 2.1 4.5E-05 32.2 2.0 28 292-332 9-36 (100)
46 cd05482 HIV_retropepsin_like R 74.6 4.2 9.1E-05 30.1 3.4 25 86-112 2-26 (87)
47 cd05481 retropepsin_like_LTR_1 70.0 4.8 0.0001 30.1 2.9 22 314-335 12-33 (93)
48 PF09668 Asp_protease: Asparty 64.6 7.6 0.00016 30.8 3.1 30 292-334 28-57 (124)
49 PF12384 Peptidase_A2B: Ty3 tr 63.3 10 0.00022 31.5 3.7 29 84-112 34-62 (177)
50 COG5550 Predicted aspartyl pro 59.7 5.8 0.00013 31.2 1.6 20 315-334 29-49 (125)
51 TIGR03698 clan_AA_DTGF clan AA 57.9 7.1 0.00015 30.0 1.8 22 313-334 17-39 (107)
52 PF09668 Asp_protease: Asparty 52.8 25 0.00054 27.9 4.2 37 80-118 22-58 (124)
53 TIGR03698 clan_AA_DTGF clan AA 43.2 31 0.00068 26.4 3.3 27 85-111 2-33 (107)
54 PF12384 Peptidase_A2B: Ty3 tr 38.2 52 0.0011 27.5 4.0 21 314-334 47-67 (177)
55 PF05984 Cytomega_UL20A: Cytom 34.6 38 0.00083 24.6 2.4 18 2-19 1-18 (100)
56 cd00303 retropepsin_like Retro 34.5 68 0.0015 21.6 3.9 20 315-334 12-31 (92)
57 PF08284 RVP_2: Retroviral asp 32.0 1E+02 0.0022 24.6 4.9 19 315-333 35-53 (135)
58 cd05480 NRIP_C NRIP_C; putativ 31.7 64 0.0014 24.6 3.2 28 293-333 3-30 (103)
59 PF08284 RVP_2: Retroviral asp 30.3 74 0.0016 25.5 3.7 31 80-112 19-49 (135)
60 cd05475 nucellin_like Nucellin 30.0 72 0.0015 28.7 4.1 32 81-112 157-194 (273)
61 PF07172 GRP: Glycine rich pro 29.1 48 0.001 25.0 2.2 14 3-16 2-15 (95)
62 PLN03146 aspartyl protease fam 27.2 51 0.0011 32.1 2.7 33 282-328 81-113 (431)
63 cd06094 RP_Saci_like RP_Saci_l 26.6 37 0.0008 25.2 1.2 23 311-333 8-30 (89)
64 cd06098 phytepsin Phytepsin, a 23.4 89 0.0019 28.8 3.5 32 81-112 188-227 (317)
65 PF13956 Ibs_toxin: Toxin Ibs, 22.2 54 0.0012 16.5 0.9 12 1-12 1-12 (19)
66 PTZ00165 aspartyl protease; Pr 22.0 50 0.0011 32.8 1.5 34 284-331 119-152 (482)
67 cd05471 pepsin_like Pepsin-lik 20.9 94 0.002 27.6 3.1 35 80-114 179-221 (283)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=376.48 Aligned_cols=298 Identities=30% Similarity=0.518 Sum_probs=236.1
Q ss_pred ccceEEEEeccCCCCC-------ChhhHHHHHHHhHHhhhhhhcc--cccccCCCCCCCCCeeEEEEEEeCCCCceEEEE
Q 019088 29 GNFVFEVENKFKAGGE-------RERTLSALKQHDTRRHGRMMAS--IDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQ 99 (346)
Q Consensus 29 ~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~ 99 (346)
..++++|.|+.++... +.+.+++..+|+.+|.+++.+. ...|+.. .....+++|+++|.||||||++.|+
T Consensus 23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Y~v~i~iGTPpq~~~vi 101 (431)
T PLN03146 23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQS-DLISNGGEYLMNISIGTPPVPILAI 101 (431)
T ss_pred CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCcccc-CcccCCccEEEEEEcCCCCceEEEE
Confidence 5688999999875321 2245666677777776665321 2224432 2234578999999999999999999
Q ss_pred EEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCCCCccceeEEEeCCCCeEeE
Q 019088 100 VDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSG 179 (346)
Q Consensus 100 lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~~~~~~~~~~~Y~~g~~~~G 179 (346)
+||||+++||+|.+|..|..+.. +.|||++|+||+.++|.++.|...+. ...|..++.|.|.+.|+||+.+.|
T Consensus 102 ~DTGS~l~Wv~C~~C~~C~~~~~-----~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~~~c~y~i~Ygdgs~~~G 174 (431)
T PLN03146 102 ADTGSDLIWTQCKPCDDCYKQVS-----PLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDENTCTYSYSYGDGSFTKG 174 (431)
T ss_pred ECCCCCcceEcCCCCcccccCCC-----CcccCCCCCCCcccCCCCcccccCCC--CCCCCCCCCCeeEEEeCCCCceee
Confidence 99999999999999999987643 68999999999999999999986543 234766667999999999997899
Q ss_pred EEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHHHHHhcCCCCCcceEeeccC-
Q 019088 180 YFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVV- 258 (346)
Q Consensus 180 ~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~~g~i~~~FS~~l~~~- 258 (346)
.+++|+|+|++..+.. ..++++.|||++...+.|. ...+||||||++..|+++||... +.++||+||.+.
T Consensus 175 ~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~ 245 (431)
T PLN03146 175 NLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLS 245 (431)
T ss_pred EEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCC
Confidence 9999999998754321 2356899999998776552 24789999999999999999763 557999999652
Q ss_pred ---CCeeEEEeCCCCC---CCceEeeCcCC--CCceeEEEeEEEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHH
Q 019088 259 ---KGGGIFAIGDVVS---PKVKTTPMVPN--MPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPML 330 (346)
Q Consensus 259 ---~~~G~l~~Gg~d~---~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~ 330 (346)
...|.|+||+... ..+.|+|++.+ +.+|.|.+++|+||++.+.++...+...+..++||||||++++||+++
T Consensus 246 ~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~ 325 (431)
T PLN03146 246 SDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDF 325 (431)
T ss_pred CCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHH
Confidence 2479999998532 24899999843 468999999999999998877665543344679999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 019088 331 YDLVLSQFRFWIA 343 (346)
Q Consensus 331 ~~~l~~~l~~~~~ 343 (346)
|++|.++|.+++.
T Consensus 326 y~~l~~~~~~~~~ 338 (431)
T PLN03146 326 YSELESAVEEAIG 338 (431)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998874
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-45 Score=351.15 Aligned_cols=250 Identities=39% Similarity=0.694 Sum_probs=214.0
Q ss_pred CCCCCCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC-CCCCCCCCCccccccCCCCCCCcceecCCcccccccC
Q 019088 74 NGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS-RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTY 152 (346)
Q Consensus 74 ~~~~~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~-~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~ 152 (346)
....+..++|+++|.||||||+|.|+|||||+++||+|..|. .|..+.. +.|+|++|+|++.+.|.+..|....
T Consensus 38 ~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~-----~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 38 SLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN-----PIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred ccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC-----CccCccccccccccCCCCccccccc
Confidence 344567789999999999999999999999999999999999 7987432 3599999999999999999999876
Q ss_pred CCCCCCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCC
Q 019088 153 NNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQ 232 (346)
Q Consensus 153 ~~~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~ 232 (346)
.. |.+++.|.|.+.|++|+.+.|++++|+|+|++.+ ....+++.|||+....+. .... .+++||||||+
T Consensus 113 ~~----~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~-~~~dGIlGLg~ 181 (398)
T KOG1339|consen 113 QS----CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLF-AAFDGILGLGR 181 (398)
T ss_pred cC----cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccc-cccceEeecCC
Confidence 54 8888999999999997779999999999999853 124567999999998765 2212 56899999999
Q ss_pred CCCcHHHHHHhcCCCCCcceEeeccCC----CeeEEEeCCCCCCC----ceEeeCcCCCC-ceeEEEeEEEEcCEEecCC
Q 019088 233 ANSSLLSQLAAAGNVRKEFAHCLDVVK----GGGIFAIGDVVSPK----VKTTPMVPNMP-HYNVILEEVEVGGNPLDLP 303 (346)
Q Consensus 233 ~~~s~~~~l~~~g~i~~~FS~~l~~~~----~~G~l~~Gg~d~~~----~~~~p~~~~~~-~w~v~l~~i~v~~~~~~~~ 303 (346)
+..+++.|+...+...++||+||.+.. .+|.|+||++|+.+ +.|+||+.+.. +|.|.+.+|+|+++. .++
T Consensus 182 ~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~ 260 (398)
T KOG1339|consen 182 GSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIG 260 (398)
T ss_pred CCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCC
Confidence 999999999987776679999999862 47999999999763 78999995544 999999999999987 555
Q ss_pred CCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHHH
Q 019088 304 TSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFW 341 (346)
Q Consensus 304 ~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~ 341 (346)
...+..+ ..++|+||||++++||.++|++|.++|.+.
T Consensus 261 ~~~~~~~-~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~ 297 (398)
T KOG1339|consen 261 SSLFCTD-GGGAIIDSGTSLTYLPTSAYNALREAIGAE 297 (398)
T ss_pred cceEecC-CCCEEEECCcceeeccHHHHHHHHHHHHhh
Confidence 5555332 688999999999999999999999999986
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=4.9e-43 Score=339.85 Aligned_cols=224 Identities=21% Similarity=0.391 Sum_probs=187.4
Q ss_pred CCCCCCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCccccccCCCCCCCcceecCCccccccc
Q 019088 74 NGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTT 151 (346)
Q Consensus 74 ~~~~~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~ 151 (346)
.+.++.+..|+++|+||||||+|.|+|||||+++||++..|. .|..+ +.|||++|+||+.+.+..
T Consensus 112 ~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~-------~~yd~s~SSTy~~~~~~~------ 178 (482)
T PTZ00165 112 DLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH-------RKFDPKKSSTYTKLKLGD------ 178 (482)
T ss_pred ecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc-------CCCCccccCCcEecCCCC------
Confidence 345788999999999999999999999999999999999996 46654 589999999999843211
Q ss_pred CCCCCCCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccC-CCCCCCCCCcceeeec
Q 019088 152 YNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSG-DLGSSTDAAVDGILGF 230 (346)
Q Consensus 152 ~~~~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GilGL 230 (346)
....+.+.|++|+ +.|.+++|+|+|++. .++++.||+++..++ .| ....+||||||
T Consensus 179 -----------~~~~~~i~YGsGs-~~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f---~~~~~DGILGL 235 (482)
T PTZ00165 179 -----------ESAETYIQYGTGE-CVLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPF---ADLPFDGLVGL 235 (482)
T ss_pred -----------ccceEEEEeCCCc-EEEEEEEEEEEECCE--------EEccEEEEEEEecccccc---ccccccceeec
Confidence 0125779999998 689999999999986 355899999998754 34 23568999999
Q ss_pred CCCC---------CcHHHHHHhcCCCC-CcceEeeccC-CCeeEEEeCCCCCC------CceEeeCcCCCCceeEEEeEE
Q 019088 231 GQAN---------SSLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSP------KVKTTPMVPNMPHYNVILEEV 293 (346)
Q Consensus 231 g~~~---------~s~~~~l~~~g~i~-~~FS~~l~~~-~~~G~l~~Gg~d~~------~~~~~p~~~~~~~w~v~l~~i 293 (346)
|++. .+++++|++||+|+ ++||+||.+. ..+|+|+|||+|+. ++.|+|+. ...+|.|.+++|
T Consensus 236 g~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i 314 (482)
T PTZ00165 236 GFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDI 314 (482)
T ss_pred CCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeE
Confidence 9875 36899999999997 9999999864 45799999999853 48999997 578999999999
Q ss_pred EEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHH
Q 019088 294 EVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRF 340 (346)
Q Consensus 294 ~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~ 340 (346)
+||++.+... .....+|+||||+++++|++++++|.+++..
T Consensus 315 ~vgg~~~~~~------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~ 355 (482)
T PTZ00165 315 LIDGKSLGFC------DRKCKAAIDTGSSLITGPSSVINPLLEKIPL 355 (482)
T ss_pred EECCEEeeec------CCceEEEEcCCCccEeCCHHHHHHHHHHcCC
Confidence 9999877542 1356799999999999999999999998864
No 4
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.2e-41 Score=314.73 Aligned_cols=235 Identities=28% Similarity=0.492 Sum_probs=189.0
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCC
Q 019088 81 GLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCS 160 (346)
Q Consensus 81 ~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~ 160 (346)
++|+++|.||||+|++.|+|||||+++||+|..|..|..+.. +.|+|++|+|++.+.|++..|.. ...|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~-----~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~ 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHME-----PPYNLNNSITSSILYCDCNKCCY-----CLSCL 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCC-----CCcCcccccccccccCCCccccc-----cCcCC
Confidence 589999999999999999999999999999999999976542 68999999999999999999942 13343
Q ss_pred CCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC----c
Q 019088 161 PGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS----S 236 (346)
Q Consensus 161 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~----s 236 (346)
++.|.|.+.|++|+.+.|.+++|+|+|++..... ......++.|||+....+.|. ....+||||||+... +
T Consensus 72 -~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~---~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 72 -NNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFL---TQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred -CCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccc---ccccceEEEccCCcccccCc
Confidence 4569999999999878999999999999764321 001123578999998776553 356799999999764 3
Q ss_pred HHHHHHhcCCCC---CcceEeeccCCCeeEEEeCCCCC--------------CCceEeeCcCCCCceeEEEeEEEEcCEE
Q 019088 237 LLSQLAAAGNVR---KEFAHCLDVVKGGGIFAIGDVVS--------------PKVKTTPMVPNMPHYNVILEEVEVGGNP 299 (346)
Q Consensus 237 ~~~~l~~~g~i~---~~FS~~l~~~~~~G~l~~Gg~d~--------------~~~~~~p~~~~~~~w~v~l~~i~v~~~~ 299 (346)
...+|.+++.+. ++||+||.+ .+|.|+||++|+ .++.|+|+. ...+|.|.+++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~~ 223 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGTT 223 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEcccc
Confidence 445566666552 899999986 379999999985 357899997 458999999999999886
Q ss_pred ecCCCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHH
Q 019088 300 LDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQF 338 (346)
Q Consensus 300 ~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l 338 (346)
.... ......++|||||++++||++++++|.+++
T Consensus 224 ~~~~-----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~ 257 (326)
T cd06096 224 SNSG-----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF 257 (326)
T ss_pred ccee-----cccCCCEEEeCCCCcccCCHHHHHHHHhhc
Confidence 1110 123567999999999999999999998875
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4.2e-41 Score=313.70 Aligned_cols=217 Identities=24% Similarity=0.426 Sum_probs=185.8
Q ss_pred CCCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCccccccCCCCCCCcceecCCcccccccCCC
Q 019088 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSR--CPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNN 154 (346)
Q Consensus 77 ~~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~--C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~ 154 (346)
++.+..|+++|.||||+|++.|+|||||+++||+|..|.. |..+ +.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~-------~~f~~~~Sst~~~~~------------ 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNH-------NRFNPRQSSTYQSTG------------ 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccccccc-------CcCCCCCCcceeeCC------------
Confidence 5668999999999999999999999999999999999964 5443 689999999998754
Q ss_pred CCCCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCC
Q 019088 155 RYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQAN 234 (346)
Q Consensus 155 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~ 234 (346)
+.+.+.|++|+ +.|.+++|+|+|++. .++++.|||+....+.+. .....+||||||++.
T Consensus 66 ----------~~~~~~yg~gs-~~G~~~~D~v~ig~~--------~i~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~ 124 (317)
T cd05478 66 ----------QPLSIQYGTGS-MTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFF--YYAPFDGILGLAYPS 124 (317)
T ss_pred ----------cEEEEEECCce-EEEEEeeeEEEECCE--------EECCEEEEEEEecCcccc--ccccccceeeeccch
Confidence 78999999999 799999999999986 345799999987765543 233579999999864
Q ss_pred C------cHHHHHHhcCCCC-CcceEeeccCC-CeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEEecC
Q 019088 235 S------SLLSQLAAAGNVR-KEFAHCLDVVK-GGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDL 302 (346)
Q Consensus 235 ~------s~~~~l~~~g~i~-~~FS~~l~~~~-~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 302 (346)
. +++++|+++|+|+ ++||+||.+.. .+|+|+||++|+. ++.|+|+. .+.+|.|.+++|+|+++.+..
T Consensus 125 ~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~ 203 (317)
T cd05478 125 IASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVAC 203 (317)
T ss_pred hcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEcc
Confidence 3 5999999999997 99999998752 4689999999865 58999997 678999999999999998743
Q ss_pred CCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHHH
Q 019088 303 PTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFW 341 (346)
Q Consensus 303 ~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~ 341 (346)
. .+..++|||||+++++|++++++|.+++.+.
T Consensus 204 ~-------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~ 235 (317)
T cd05478 204 S-------GGCQAIVDTGTSLLVGPSSDIANIQSDIGAS 235 (317)
T ss_pred C-------CCCEEEECCCchhhhCCHHHHHHHHHHhCCc
Confidence 2 2456999999999999999999999988653
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.8e-41 Score=314.35 Aligned_cols=215 Identities=26% Similarity=0.424 Sum_probs=180.1
Q ss_pred CCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC----CCCCCCCCCccccccCCCCCCCcceecCCcccccccCC
Q 019088 78 SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS----RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYN 153 (346)
Q Consensus 78 ~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~----~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~ 153 (346)
+.+.+|+++|.||||||+|.|+|||||+++||+|..|. .|..+ +.|+|++|+|++...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~-------~~y~~~~SsT~~~~~----------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH-------HKYNSSKSSTYVKNG----------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc-------CcCCcccCcceeeCC-----------
Confidence 45789999999999999999999999999999999986 35443 689999999998632
Q ss_pred CCCCCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCC
Q 019088 154 NRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQA 233 (346)
Q Consensus 154 ~~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~ 233 (346)
+.|.+.|++|+ +.|.+++|+|+|++. .+.++.|||+++..+... .....+||||||++
T Consensus 64 -----------~~~~i~Yg~G~-~~G~~~~D~v~~g~~--------~~~~~~Fg~~~~~~~~~~--~~~~~dGilGLg~~ 121 (325)
T cd05490 64 -----------TEFAIQYGSGS-LSGYLSQDTVSIGGL--------QVEGQLFGEAVKQPGITF--IAAKFDGILGMAYP 121 (325)
T ss_pred -----------cEEEEEECCcE-EEEEEeeeEEEECCE--------EEcCEEEEEEeeccCCcc--cceeeeEEEecCCc
Confidence 79999999998 799999999999986 345799999987755321 23457999999986
Q ss_pred CC------cHHHHHHhcCCCC-CcceEeeccC---CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEE
Q 019088 234 NS------SLLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNP 299 (346)
Q Consensus 234 ~~------s~~~~l~~~g~i~-~~FS~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~ 299 (346)
.. +++++|+++|.|. ++||+||.+. ..+|+|+||++|+. ++.|+|+. ...+|.|++++|+|+++.
T Consensus 122 ~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~ 200 (325)
T cd05490 122 RISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGL 200 (325)
T ss_pred cccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCee
Confidence 44 5889999999997 9999999864 23699999999975 58999997 568999999999998864
Q ss_pred ecCCCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHH
Q 019088 300 LDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRF 340 (346)
Q Consensus 300 ~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~ 340 (346)
.. ......+||||||+++++|.+++++|.+++.+
T Consensus 201 ~~-------~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~ 234 (325)
T cd05490 201 TL-------CKGGCEAIVDTGTSLITGPVEEVRALQKAIGA 234 (325)
T ss_pred ee-------cCCCCEEEECCCCccccCCHHHHHHHHHHhCC
Confidence 32 12245799999999999999999999998854
No 7
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=8.3e-41 Score=311.84 Aligned_cols=216 Identities=24% Similarity=0.437 Sum_probs=183.0
Q ss_pred CeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCC
Q 019088 80 TGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYP 157 (346)
Q Consensus 80 ~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~ 157 (346)
|..|+++|.||||||++.|+|||||+++||+|..|. .|..+ +.|||++|+|++...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~-------~~f~~~~SsT~~~~~--------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH-------TKFNPSQSSTYSTNG--------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc-------CCCCcccCCCceECC---------------
Confidence 467999999999999999999999999999999996 46544 689999999998744
Q ss_pred CCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCC----
Q 019088 158 SCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQA---- 233 (346)
Q Consensus 158 ~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~---- 233 (346)
|.|.+.|++|+ +.|.+++|+|++++. .++++.|||+....+... .....+||||||++
T Consensus 59 -------~~~~~~Yg~Gs-~~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~ 120 (318)
T cd05477 59 -------ETFSLQYGSGS-LTGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNF--VYAQFDGILGLAYPSISA 120 (318)
T ss_pred -------cEEEEEECCcE-EEEEEEeeEEEECCE--------EEcCEEEEEEEecccccc--cccceeeEeecCcccccc
Confidence 79999999998 799999999999976 345799999997654211 12457999999985
Q ss_pred --CCcHHHHHHhcCCCC-CcceEeeccC--CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEEecCCC
Q 019088 234 --NSSLLSQLAAAGNVR-KEFAHCLDVV--KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDLPT 304 (346)
Q Consensus 234 --~~s~~~~l~~~g~i~-~~FS~~l~~~--~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 304 (346)
..+++++|+++|.|. ++||+||.+. ..+|.|+||++|++ ++.|+|+. ...+|.|.+++|+|+++.+....
T Consensus 121 ~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~ 199 (318)
T cd05477 121 GGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWCS 199 (318)
T ss_pred cCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEecccC
Confidence 357999999999997 9999999874 24699999999965 48999997 56899999999999998874322
Q ss_pred CCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHHHH
Q 019088 305 SLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFWI 342 (346)
Q Consensus 305 ~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~~ 342 (346)
.+..+||||||+++++|++++++|++.+.++.
T Consensus 200 ------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~ 231 (318)
T cd05477 200 ------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ 231 (318)
T ss_pred ------CCceeeECCCCccEECCHHHHHHHHHHhCCcc
Confidence 24569999999999999999999999887654
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.3e-40 Score=310.31 Aligned_cols=210 Identities=25% Similarity=0.424 Sum_probs=178.7
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCC
Q 019088 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCS 160 (346)
Q Consensus 83 Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~ 160 (346)
|+++|+||||||++.|+|||||+++||++..|. .|..+ +.|+|++|+|++...
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~-------~~y~~~~SsT~~~~~------------------ 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH-------NRFQPSESSTYVSNG------------------ 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc-------ceECCCCCcccccCC------------------
Confidence 899999999999999999999999999999996 57654 589999999998754
Q ss_pred CCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC-----
Q 019088 161 PGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS----- 235 (346)
Q Consensus 161 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~----- 235 (346)
+.|.+.|++|+ +.|.+++|+|+|++. .+.++.|||+....+... ....++||||||++..
T Consensus 56 ----~~~~i~Yg~g~-~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 56 ----EAFSIQYGTGS-LTGIIGIDQVTVEGI--------TVQNQQFAESVSEPGSTF--QDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred ----cEEEEEeCCcE-EEEEeeecEEEECCE--------EEcCEEEEEeeccCcccc--cccccceEeccCchhhccCCC
Confidence 79999999998 799999999999875 345799999877654321 2346799999998654
Q ss_pred -cHHHHHHhcCCCC-CcceEeeccC---CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEEecCCCCC
Q 019088 236 -SLLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSL 306 (346)
Q Consensus 236 -s~~~~l~~~g~i~-~~FS~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 306 (346)
+++++|++||+|+ ++||+||.+. ..+|+|+||++|++ ++.|+|+. +..+|.|++++|+|+++.+..+
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~~--- 196 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFCS--- 196 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEecC---
Confidence 4799999999997 9999999864 24799999999976 48999997 6789999999999999876322
Q ss_pred cCCCCCCcEEEcccccccccCHHHHHHHHHHHHH
Q 019088 307 LGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRF 340 (346)
Q Consensus 307 ~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~ 340 (346)
....+||||||+++++|++++++|.+.+.+
T Consensus 197 ----~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~ 226 (316)
T cd05486 197 ----DGCQAIVDTGTSLITGPSGDIKQLQNYIGA 226 (316)
T ss_pred ----CCCEEEECCCcchhhcCHHHHHHHHHHhCC
Confidence 245799999999999999999999887754
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.5e-40 Score=308.29 Aligned_cols=212 Identities=27% Similarity=0.441 Sum_probs=179.0
Q ss_pred CCCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CCCCCCCCCccccccCCCCCCCcceecCCcccccccCC
Q 019088 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS---RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYN 153 (346)
Q Consensus 77 ~~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~---~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~ 153 (346)
++.+..|+++|.||||||++.|+|||||+++||+|..|. .|..+ +.|+|++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~-------~~y~~~~SsT~~~~~----------- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH-------SKYKSSKSSTYKKNG----------- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc-------CcCCcccCCCcccCC-----------
Confidence 567899999999999999999999999999999999995 67755 589999999998754
Q ss_pred CCCCCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCC
Q 019088 154 NRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQA 233 (346)
Q Consensus 154 ~~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~ 233 (346)
..+.+.|++|+ +.|.+++|+|+|++. .++++.||++....+... ....++||||||++
T Consensus 67 -----------~~~~i~Yg~G~-~~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~--~~~~~dGilGLg~~ 124 (317)
T cd06098 67 -----------TSASIQYGTGS-ISGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTF--LLAKFDGILGLGFQ 124 (317)
T ss_pred -----------CEEEEEcCCce-EEEEEEeeEEEECCE--------EECCEEEEEEEecCCccc--cccccceecccccc
Confidence 68899999998 799999999999875 345799999987644211 23467999999986
Q ss_pred CC------cHHHHHHhcCCCC-CcceEeeccC---CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEE
Q 019088 234 NS------SLLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNP 299 (346)
Q Consensus 234 ~~------s~~~~l~~~g~i~-~~FS~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~ 299 (346)
.. +++.+|+++|+|+ ++||+||.+. ..+|.|+||++|++ ++.|+|+. ...+|.|.+++|+|+++.
T Consensus 125 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~ 203 (317)
T cd06098 125 EISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGKS 203 (317)
T ss_pred chhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCEE
Confidence 44 5788999999997 8999999864 24799999999976 48999997 568999999999999988
Q ss_pred ecCCCCCcCCCCCCcEEEcccccccccCHHHHHHHH
Q 019088 300 LDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVL 335 (346)
Q Consensus 300 ~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~ 335 (346)
+.... ....+||||||+++++|++++++|.
T Consensus 204 ~~~~~------~~~~aivDTGTs~~~lP~~~~~~i~ 233 (317)
T cd06098 204 TGFCA------GGCAAIADSGTSLLAGPTTIVTQIN 233 (317)
T ss_pred eeecC------CCcEEEEecCCcceeCCHHHHHhhh
Confidence 65432 2456999999999999999887764
No 10
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.6e-40 Score=307.43 Aligned_cols=220 Identities=25% Similarity=0.363 Sum_probs=183.0
Q ss_pred CCCCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCC
Q 019088 76 HPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNR 155 (346)
Q Consensus 76 ~~~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~ 155 (346)
.++.+..|+++|.||||+|++.|++||||+++||+|..|..|.. .|...+.|+|++|+|++...
T Consensus 5 ~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~Sst~~~~~------------- 68 (329)
T cd05485 5 SNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNI---ACLLHNKYDSTKSSTYKKNG------------- 68 (329)
T ss_pred eeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCc---cccCCCeECCcCCCCeEECC-------------
Confidence 46778999999999999999999999999999999999863221 11223689999999998754
Q ss_pred CCCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC
Q 019088 156 YPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS 235 (346)
Q Consensus 156 ~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~ 235 (346)
|.|.+.|++|+ +.|.+++|+++|++. .++++.|||+.+..+... .....+||||||++..
T Consensus 69 ---------~~~~i~Y~~g~-~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~ 128 (329)
T cd05485 69 ---------TEFAIQYGSGS-LSGFLSTDTVSVGGV--------SVKGQTFAEAINEPGLTF--VAAKFDGILGMGYSSI 128 (329)
T ss_pred ---------eEEEEEECCce-EEEEEecCcEEECCE--------EECCEEEEEEEecCCccc--cccccceEEEcCCccc
Confidence 79999999998 799999999999875 345799999987654321 2345799999999755
Q ss_pred c------HHHHHHhcCCCC-CcceEeeccC---CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEEec
Q 019088 236 S------LLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLD 301 (346)
Q Consensus 236 s------~~~~l~~~g~i~-~~FS~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~ 301 (346)
+ ++.+|++||+|+ +.||+||.+. ..+|+|+||++|+. ++.|+|+. ...+|.|.+++++++++.+.
T Consensus 129 s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~~~~ 207 (329)
T cd05485 129 SVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEGEFC 207 (329)
T ss_pred cccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCeeec
Confidence 3 689999999997 9999999864 24699999999865 58999997 57899999999999998762
Q ss_pred CCCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHH
Q 019088 302 LPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRF 340 (346)
Q Consensus 302 ~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~ 340 (346)
..+..+||||||+++++|++++++|.+++.+
T Consensus 208 --------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~ 238 (329)
T cd05485 208 --------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGA 238 (329)
T ss_pred --------CCCcEEEEccCCcceeCCHHHHHHHHHHhCC
Confidence 2245699999999999999999999988764
No 11
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=6.9e-40 Score=300.03 Aligned_cols=211 Identities=27% Similarity=0.407 Sum_probs=178.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCCCC
Q 019088 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPG 162 (346)
Q Consensus 83 Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~~~ 162 (346)
|+++|+||||+|++.|+|||||+++||+|..|..|..+. .+.|+|++|+|++...
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~-----~~~y~~~~Sst~~~~~-------------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG-----HKLYDPSKSSTAKLLP-------------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc-----CCcCCCccCccceecC--------------------
Confidence 799999999999999999999999999999998876543 2579999999998643
Q ss_pred ccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC-------
Q 019088 163 VRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS------- 235 (346)
Q Consensus 163 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~------- 235 (346)
.|.+.+.|++|+.+.|.+++|+|+|++. .++++.||++....+.+. .....+||||||++..
T Consensus 56 -~~~~~i~Y~~G~~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 -GATWSISYGDGSSASGIVYTDTVSIGGV--------EVPNQAIELATAVSASFF--SDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred -CcEEEEEeCCCCeEEEEEEEEEEEECCE--------EECCeEEEEEeecCcccc--ccccccceeeeccccccccccCC
Confidence 3799999999987899999999999985 345799999998765322 2356899999998643
Q ss_pred --cHHHHHHhcCCCCCcceEeeccCCCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEEecCCCCCcCC
Q 019088 236 --SLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGT 309 (346)
Q Consensus 236 --s~~~~l~~~g~i~~~FS~~l~~~~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 309 (346)
+++++|.+++. ++.||+||.+ ...|+|+|||+|+. ++.|+|+..+..+|.|++++|+|+++....
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~------- 195 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS------- 195 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee-------
Confidence 57889998865 7899999987 56899999999964 599999986578999999999999874321
Q ss_pred CCCCcEEEcccccccccCHHHHHHHHHHH
Q 019088 310 GDERGTIIDSGTTLAYLPPMLYDLVLSQF 338 (346)
Q Consensus 310 ~~~~~~iiDTGts~~~lp~~~~~~l~~~l 338 (346)
.....++|||||+++++|.+++++|++++
T Consensus 196 ~~~~~~iiDSGTs~~~lP~~~~~~l~~~l 224 (278)
T cd06097 196 RSGFSAIADTGTTLILLPDAIVEAYYSQV 224 (278)
T ss_pred cCCceEEeecCCchhcCCHHHHHHHHHhC
Confidence 23567999999999999999999999988
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.6e-39 Score=303.27 Aligned_cols=216 Identities=27% Similarity=0.453 Sum_probs=183.5
Q ss_pred CCCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCccccccCCCCCCCcceecCCcccccccCCC
Q 019088 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNN 154 (346)
Q Consensus 77 ~~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~ 154 (346)
++.+..|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|+|++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~-------~~y~~~~Sst~~~~~------------ 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH-------SKYDSSASSTYKANG------------ 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc-------ceECCCCCcceeeCC------------
Confidence 556789999999999999999999999999999999996 57654 589999999998643
Q ss_pred CCCCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCC
Q 019088 155 RYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQAN 234 (346)
Q Consensus 155 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~ 234 (346)
|.+.+.|++|+ +.|.+++|+|++++. .++++.|||+....+... .....+||||||++.
T Consensus 66 ----------~~~~~~y~~g~-~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~--~~~~~dGilGLg~~~ 124 (320)
T cd05488 66 ----------TEFKIQYGSGS-LEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAF--AFGKFDGILGLAYDT 124 (320)
T ss_pred ----------CEEEEEECCce-EEEEEEEeEEEECCE--------EECCEEEEEEecCCCcce--eeeeeceEEecCCcc
Confidence 79999999998 799999999999875 345799999987654321 134579999999976
Q ss_pred C------cHHHHHHhcCCCC-CcceEeeccC-CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEEecC
Q 019088 235 S------SLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLDL 302 (346)
Q Consensus 235 ~------s~~~~l~~~g~i~-~~FS~~l~~~-~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 302 (346)
. +.+.+|+++|+|. ++||+||.+. ..+|.|+||++|+. +++|+|+. ...+|.|++++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc
Confidence 4 3567899999997 9999999975 45799999999864 59999998 568999999999999987743
Q ss_pred CCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHHH
Q 019088 303 PTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFW 341 (346)
Q Consensus 303 ~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~ 341 (346)
+ ...++|||||+++++|++++++|.+.+.+.
T Consensus 204 ~--------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~ 234 (320)
T cd05488 204 E--------NTGAAIDTGTSLIALPSDLAEMLNAEIGAK 234 (320)
T ss_pred C--------CCeEEEcCCcccccCCHHHHHHHHHHhCCc
Confidence 2 346999999999999999999999888643
No 13
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.6e-39 Score=302.72 Aligned_cols=219 Identities=23% Similarity=0.402 Sum_probs=181.4
Q ss_pred CCCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCC
Q 019088 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRY 156 (346)
Q Consensus 77 ~~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~ 156 (346)
++.+..|+++|.||||+|++.|+|||||+++||++..|..|.. .|..++.|+|++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~SsT~~~~~-------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYT---ACVTHNLYDASDSSTYKENG-------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcch---hhcccCcCCCCCCeeeeECC--------------
Confidence 5668999999999999999999999999999999988864321 12223689999999998754
Q ss_pred CCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccC-CCCCCCCCCcceeeecCCCCC
Q 019088 157 PSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSG-DLGSSTDAAVDGILGFGQANS 235 (346)
Q Consensus 157 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GilGLg~~~~ 235 (346)
|.|.+.|++|+ +.|.+++|+|++++.. + ++.||++..... .+. ....+||||||++..
T Consensus 66 --------~~~~~~Yg~g~-~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~~~~---~~~~dGilGLg~~~~ 124 (326)
T cd05487 66 --------TEFTIHYASGT-VKGFLSQDIVTVGGIP--------V-TQMFGEVTALPAIPFM---LAKFDGVLGMGYPKQ 124 (326)
T ss_pred --------EEEEEEeCCce-EEEEEeeeEEEECCEE--------e-eEEEEEEEeccCCccc---eeecceEEecCChhh
Confidence 79999999998 8999999999998752 1 478999887532 221 245799999998643
Q ss_pred ------cHHHHHHhcCCCC-CcceEeeccC---CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEEec
Q 019088 236 ------SLLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPLD 301 (346)
Q Consensus 236 ------s~~~~l~~~g~i~-~~FS~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~ 301 (346)
+++++|++||+|+ ++||+||.+. ..+|.|+||++|++ ++.|+|+. ...+|.|++++++|+++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEEe
Confidence 5899999999997 9999999874 34799999999975 48899987 57899999999999998764
Q ss_pred CCCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHHH
Q 019088 302 LPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFW 341 (346)
Q Consensus 302 ~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~ 341 (346)
.. .+..++|||||+++++|.+++++|++++++.
T Consensus 204 ~~-------~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~ 236 (326)
T cd05487 204 CE-------DGCTAVVDTGASFISGPTSSISKLMEALGAK 236 (326)
T ss_pred cC-------CCCEEEECCCccchhCcHHHHHHHHHHhCCc
Confidence 32 2456999999999999999999999988653
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8.4e-39 Score=308.07 Aligned_cols=211 Identities=25% Similarity=0.414 Sum_probs=176.5
Q ss_pred CCCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCccccccCCCCCCCcceecCCcccccccCCC
Q 019088 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNN 154 (346)
Q Consensus 77 ~~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~ 154 (346)
++.+..|+++|+||||||++.|+|||||+++||+|..|. .|..+ +.|||++|+|++...
T Consensus 134 n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~-------~~yd~s~SsT~~~~~------------ 194 (453)
T PTZ00147 134 DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK-------NLYDSSKSKTYEKDG------------ 194 (453)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC-------CccCCccCcceEECC------------
Confidence 567889999999999999999999999999999999996 46554 589999999998754
Q ss_pred CCCCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCC--CCCCCCCCcceeeecCC
Q 019088 155 RYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGD--LGSSTDAAVDGILGFGQ 232 (346)
Q Consensus 155 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~--~~~~~~~~~~GilGLg~ 232 (346)
+.+.+.|++|+ +.|.+++|+|++|+.. ++ ..|+++.+..+. +. ....+|||||||+
T Consensus 195 ----------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~f~~~~--~~~~~DGILGLG~ 252 (453)
T PTZ00147 195 ----------TKVEMNYVSGT-VSGFFSKDLVTIGNLS--------VP-YKFIEVTDTNGFEPFY--TESDFDGIFGLGW 252 (453)
T ss_pred ----------CEEEEEeCCCC-EEEEEEEEEEEECCEE--------EE-EEEEEEEeccCccccc--ccccccceecccC
Confidence 79999999998 8999999999999852 23 578888765431 11 2346799999999
Q ss_pred CCC------cHHHHHHhcCCCC-CcceEeeccC-CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEEe
Q 019088 233 ANS------SLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNPL 300 (346)
Q Consensus 233 ~~~------s~~~~l~~~g~i~-~~FS~~l~~~-~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~ 300 (346)
+.. +++.+|++||+|+ ++||+||.+. ..+|.|+|||+|++ ++.|+|+. .+.+|.|.++ +.+++...
T Consensus 253 ~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~vg~~~~ 330 (453)
T PTZ00147 253 KDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHFGNVSS 330 (453)
T ss_pred CccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEECCEec
Confidence 754 5788999999997 8999999864 45799999999966 58999997 6789999998 57776432
Q ss_pred cCCCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHH
Q 019088 301 DLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRF 340 (346)
Q Consensus 301 ~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~ 340 (346)
....+||||||+++++|++++++|++++.+
T Consensus 331 ----------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~ 360 (453)
T PTZ00147 331 ----------EKANVIVDSGTSVITVPTEFLNKFVESLDV 360 (453)
T ss_pred ----------CceeEEECCCCchhcCCHHHHHHHHHHhCC
Confidence 245699999999999999999999998853
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.7e-38 Score=299.19 Aligned_cols=218 Identities=24% Similarity=0.321 Sum_probs=174.3
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCC
Q 019088 81 GLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCS 160 (346)
Q Consensus 81 ~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~ 160 (346)
..|+++|.||||+|+|.|+|||||+++||+|..|..| ++.|+|++|+|++...
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~~~------------------ 54 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRDLG------------------ 54 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCcccCC------------------
Confidence 3599999999999999999999999999999877432 2589999999999865
Q ss_pred CCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC-----
Q 019088 161 PGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS----- 235 (346)
Q Consensus 161 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~----- 235 (346)
|.|.+.|++|+ +.|.+++|+|+|++... ....+.|++..+..+.+. .....|||||||++..
T Consensus 55 ----~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~------~~~~~~~~~~~~~~~~~~--~~~~~dGIlGLg~~~l~~~~~ 121 (364)
T cd05473 55 ----KGVTVPYTQGS-WEGELGTDLVSIPKGPN------VTFRANIAAITESENFFL--NGSNWEGILGLAYAELARPDS 121 (364)
T ss_pred ----ceEEEEECcce-EEEEEEEEEEEECCCCc------cceEEeeEEEecccccee--cccccceeeeecccccccCCC
Confidence 79999999998 79999999999986311 111234556554443331 1235799999998643
Q ss_pred ---cHHHHHHhcCCCCCcceEeeccC----------CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCE
Q 019088 236 ---SLLSQLAAAGNVRKEFAHCLDVV----------KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGN 298 (346)
Q Consensus 236 ---s~~~~l~~~g~i~~~FS~~l~~~----------~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~ 298 (346)
+++++|++|+.++++||++|... ..+|.|+||++|+. .+.|+|+. ...+|.|.+++|+|+++
T Consensus 122 ~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~ 200 (364)
T cd05473 122 SVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQ 200 (364)
T ss_pred CCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCE
Confidence 68899999999878999988421 23699999999965 48999997 56799999999999999
Q ss_pred EecCCCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHHHH
Q 019088 299 PLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFWI 342 (346)
Q Consensus 299 ~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~~ 342 (346)
.+..+...+. ...+||||||+++++|++++++|.+++.+++
T Consensus 201 ~~~~~~~~~~---~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~ 241 (364)
T cd05473 201 SLNLDCKEYN---YDKAIVDSGTTNLRLPVKVFNAAVDAIKAAS 241 (364)
T ss_pred eccccccccc---CccEEEeCCCcceeCCHHHHHHHHHHHHhhc
Confidence 8865443221 2469999999999999999999999998764
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.4e-38 Score=303.32 Aligned_cols=210 Identities=24% Similarity=0.441 Sum_probs=175.1
Q ss_pred CCCCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCCCCCCccccccCCCCCCCcceecCCcccccccCCC
Q 019088 77 PSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS--RCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNN 154 (346)
Q Consensus 77 ~~~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~ 154 (346)
++.+..|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+|++...
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~-------~~yd~s~SsT~~~~~------------ 193 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK-------NLYDSSKSKSYEKDG------------ 193 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC-------CCccCccCcccccCC------------
Confidence 566789999999999999999999999999999999996 57655 589999999998754
Q ss_pred CCCCCCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccC---CCCCCCCCCcceeeecC
Q 019088 155 RYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSG---DLGSSTDAAVDGILGFG 231 (346)
Q Consensus 155 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~---~~~~~~~~~~~GilGLg 231 (346)
+.+.+.|++|+ +.|.+++|+|++|+.. + ...|+++.+..+ .+ ....+|||||||
T Consensus 194 ----------~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~--------~-~~~f~~~~~~~~~~~~~---~~~~~dGIlGLg 250 (450)
T PTZ00013 194 ----------TKVDITYGSGT-VKGFFSKDLVTLGHLS--------M-PYKFIEVTDTDDLEPIY---SSSEFDGILGLG 250 (450)
T ss_pred ----------cEEEEEECCce-EEEEEEEEEEEECCEE--------E-ccEEEEEEeccccccce---ecccccceeccc
Confidence 79999999998 8999999999999853 2 257888776532 12 124579999999
Q ss_pred CCCC------cHHHHHHhcCCCC-CcceEeeccC-CCeeEEEeCCCCCC----CceEeeCcCCCCceeEEEeEEEEcCEE
Q 019088 232 QANS------SLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSP----KVKTTPMVPNMPHYNVILEEVEVGGNP 299 (346)
Q Consensus 232 ~~~~------s~~~~l~~~g~i~-~~FS~~l~~~-~~~G~l~~Gg~d~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~ 299 (346)
++.. +++.+|++||+|+ ++||+||.+. ..+|.|+|||+|++ ++.|+|+. ...+|.|.++ +.+|...
T Consensus 251 ~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~ 328 (450)
T PTZ00013 251 WKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQT 328 (450)
T ss_pred CCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECcee
Confidence 8754 5889999999998 8999999864 45799999999976 48999997 6689999998 6666543
Q ss_pred ecCCCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHH
Q 019088 300 LDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRF 340 (346)
Q Consensus 300 ~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~ 340 (346)
. ....+||||||+++++|+++++++++.+..
T Consensus 329 ~----------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~ 359 (450)
T PTZ00013 329 M----------QKANVIVDSGTTTITAPSEFLNKFFANLNV 359 (450)
T ss_pred c----------cccceEECCCCccccCCHHHHHHHHHHhCC
Confidence 2 135699999999999999999999988753
No 17
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6e-38 Score=290.17 Aligned_cols=195 Identities=39% Similarity=0.680 Sum_probs=165.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCCC
Q 019088 82 LYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSP 161 (346)
Q Consensus 82 ~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~~ 161 (346)
+|+++|.||||||++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 499999999999999999999999999987553
Q ss_pred CccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHHHH
Q 019088 162 GVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQL 241 (346)
Q Consensus 162 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l 241 (346)
|.|.+.|++|+.++|.+++|+|+|++.. .++++.|||+...++.+ ...+||||||++..+++.|+
T Consensus 34 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~-----~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ---CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLF-----GGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ---CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCcc-----CCCCEEEECCCCcchHHHHh
Confidence 3789999999978999999999998741 24579999999876544 25799999999999999998
Q ss_pred HhcCCCCCcceEeeccC--CCeeEEEeCCCCC--CCceEeeCcCCC---CceeEEEeEEEEcCEEecCCCCCcCCCCCCc
Q 019088 242 AAAGNVRKEFAHCLDVV--KGGGIFAIGDVVS--PKVKTTPMVPNM---PHYNVILEEVEVGGNPLDLPTSLLGTGDERG 314 (346)
Q Consensus 242 ~~~g~i~~~FS~~l~~~--~~~G~l~~Gg~d~--~~~~~~p~~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 314 (346)
..+ .+++||+||.+. ..+|+|+||++|+ +++.|+|++.++ .+|.|++++|+||++.+.+++.. .....
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCCC
Confidence 765 458999999864 3579999999998 579999998543 68999999999999988654321 23567
Q ss_pred EEEcccccccccCHHHHHHHHHHHHHHHh
Q 019088 315 TIIDSGTTLAYLPPMLYDLVLSQFRFWIA 343 (346)
Q Consensus 315 ~iiDTGts~~~lp~~~~~~l~~~l~~~~~ 343 (346)
++|||||+++++|+++|++|.+++.+++.
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~~ 202 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAMA 202 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998763
No 18
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.5e-37 Score=283.17 Aligned_cols=218 Identities=33% Similarity=0.644 Sum_probs=182.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCCCC
Q 019088 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPG 162 (346)
Q Consensus 83 Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~~~ 162 (346)
|+++|.||||+|++.|+|||||+++||+|..|..|..+... ...|++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~---~~~~~~~~s~~~~~~--------------------- 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP---RFKYDSSKSSTYKDT--------------------- 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC---CCccCccCCceeecC---------------------
Confidence 78999999999999999999999999999999877654321 012677777766543
Q ss_pred ccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCC------Cc
Q 019088 163 VRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQAN------SS 236 (346)
Q Consensus 163 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~------~s 236 (346)
.|.+.+.|++|+ +.|.+++|+|+|++.. ++++.|||+......+ .....+||||||+.. .+
T Consensus 57 -~~~~~~~Y~~g~-~~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 57 -GCTFSITYGDGS-VTGGLGTDTVTIGGLT--------IPNQTFGCATSESGDF---SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred -CCEEEEEECCCe-EEEEEEEeEEEECCEE--------EeceEEEEEeccCCcc---cccccceEeecCCcccccccCCC
Confidence 389999999987 7999999999999863 4579999999886533 245689999999988 78
Q ss_pred HHHHHHhcCCCC-CcceEeeccC---CCeeEEEeCCCCCC----CceEeeCcCC-CCceeEEEeEEEEcCEEecCCCCCc
Q 019088 237 LLSQLAAAGNVR-KEFAHCLDVV---KGGGIFAIGDVVSP----KVKTTPMVPN-MPHYNVILEEVEVGGNPLDLPTSLL 307 (346)
Q Consensus 237 ~~~~l~~~g~i~-~~FS~~l~~~---~~~G~l~~Gg~d~~----~~~~~p~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~ 307 (346)
+++||.++++|. ++||+||.+. ...|.|+||++|+. ++.|+|++.. ..+|.|.+++|.|++.....
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~----- 198 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVIS----- 198 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeee-----
Confidence 999999999987 9999999984 47899999999974 6999999965 78999999999999874111
Q ss_pred CCCCCCcEEEcccccccccCHHHHHHHHHHHHHHHh
Q 019088 308 GTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFWIA 343 (346)
Q Consensus 308 ~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~~~ 343 (346)
......++|||||++++||.+++++|++++.+...
T Consensus 199 -~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~ 233 (283)
T cd05471 199 -SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVS 233 (283)
T ss_pred -cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccc
Confidence 22356799999999999999999999999987654
No 19
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=8.4e-37 Score=288.41 Aligned_cols=233 Identities=23% Similarity=0.352 Sum_probs=185.4
Q ss_pred eCCCCce-EEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCC---------CCC
Q 019088 89 LGTPTDE-YYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNR---------YPS 158 (346)
Q Consensus 89 iGtP~q~-~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~---------~~~ 158 (346)
+|||-.+ +.|++||||+++||+|.+ .+|+|+..++|+++.|+...+.. ...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5788777 999999999999999864 45789999999999998765431 235
Q ss_pred CCCCccceeEEE-eCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcH
Q 019088 159 CSPGVRCEYVVT-YGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSL 237 (346)
Q Consensus 159 C~~~~~~~~~~~-Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~ 237 (346)
|.. +.|.|... |++|+...|++++|+|+|+..++.......++++.|||+.+..... ....+|||||||++..|+
T Consensus 63 c~~-~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~---~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CGN-NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG---LPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CCC-CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC---CccccccccccCCCccch
Confidence 633 35888665 7789878999999999998654332111245689999998753211 123479999999999999
Q ss_pred HHHHHhcCCCCCcceEeeccC-CCeeEEEeCCCCC----------CCceEeeCcCC---CCceeEEEeEEEEcCEEecCC
Q 019088 238 LSQLAAAGNVRKEFAHCLDVV-KGGGIFAIGDVVS----------PKVKTTPMVPN---MPHYNVILEEVEVGGNPLDLP 303 (346)
Q Consensus 238 ~~~l~~~g~i~~~FS~~l~~~-~~~G~l~~Gg~d~----------~~~~~~p~~~~---~~~w~v~l~~i~v~~~~~~~~ 303 (346)
+.||..++..+++||+||.+. ..+|.|+||+.++ +.++|+||+.+ ..+|.|++++|+||++.+.++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 999998777669999999874 3579999999874 56899999865 369999999999999999876
Q ss_pred CCCcC--CCCCCcEEEcccccccccCHHHHHHHHHHHHHHHhc
Q 019088 304 TSLLG--TGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFWIAS 344 (346)
Q Consensus 304 ~~~~~--~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~~~~ 344 (346)
+..+. ..+..++||||||++++||.++|++|.++|.+++..
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~ 261 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATAR 261 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcc
Confidence 65443 234567999999999999999999999999988753
No 20
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=9.2e-37 Score=278.52 Aligned_cols=191 Identities=36% Similarity=0.758 Sum_probs=157.3
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCceeEeCC-CCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCC
Q 019088 81 GLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCA-GCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSC 159 (346)
Q Consensus 81 ~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~-~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C 159 (346)
++|+++|.||||||++.|+|||||+++||+|. +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 46999999999999999999999999999983 55444
Q ss_pred CCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHH
Q 019088 160 SPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLS 239 (346)
Q Consensus 160 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 239 (346)
.|.|.+.|+|++.+.|.+++|+|+|+..++.. .++++.|||+....+.+.. .....+||||||++..++++
T Consensus 39 ----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~----~~~~~~Fgc~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSR----AKPRIAFGCGYDQQGPLLN-PPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCCCceEEEEEEEEEEEeecCCCc----ccCCEEEEeeeccCCcccC-CCccCCEEEECCCCCCCHHH
Confidence 17899999988779999999999997643321 3457999999876543321 23468999999999999999
Q ss_pred HHHhcCCCCCcceEeeccCCCeeEEEeCCCCC--CCceEeeCcCC--CCceeEEEeEEEEcCEEecCCCCCcCCCCCCcE
Q 019088 240 QLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVS--PKVKTTPMVPN--MPHYNVILEEVEVGGNPLDLPTSLLGTGDERGT 315 (346)
Q Consensus 240 ~l~~~g~i~~~FS~~l~~~~~~G~l~~Gg~d~--~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 315 (346)
||.++++|+++||+||.+ ..+|.|+||+... +.+.|+|+..+ ..+|.|++.+|+||++... .....+
T Consensus 110 ql~~~~~i~~~Fs~~l~~-~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~~ 180 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS-NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLEV 180 (273)
T ss_pred HHHhcCCcCceEEEEccC-CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCceE
Confidence 999999999999999987 5579999996432 35999999855 4799999999999998542 234679
Q ss_pred EEcccccccccCHHHH
Q 019088 316 IIDSGTTLAYLPPMLY 331 (346)
Q Consensus 316 iiDTGts~~~lp~~~~ 331 (346)
||||||+++++|+++|
T Consensus 181 ivDTGTt~t~lp~~~y 196 (273)
T cd05475 181 VFDSGSSYTYFNAQAY 196 (273)
T ss_pred EEECCCceEEcCCccc
Confidence 9999999999999876
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.4e-35 Score=268.14 Aligned_cols=184 Identities=42% Similarity=0.750 Sum_probs=157.0
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCCC
Q 019088 82 LYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSP 161 (346)
Q Consensus 82 ~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~~ 161 (346)
+|+++|+||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 599999999999999999999999999985
Q ss_pred CccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHHHH
Q 019088 162 GVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQL 241 (346)
Q Consensus 162 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l 241 (346)
|.|.+.|++|+.+.|.+++|+|+|++.. ..++++.|||+....+ + .....+||||||+...|+++||
T Consensus 31 ---~~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~---~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 31 ---CSYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G---SFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ---CceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C---ccCCCCEEEECCCCcccHHHHh
Confidence 2678899998889999999999999862 1345799999998865 3 3456899999999999999999
Q ss_pred HhcCCCCCcceEeeccC---CCeeEEEeCCCCC---CCceEeeCcCC---CCceeEEEeEEEEcCEEecCCCCCcC--CC
Q 019088 242 AAAGNVRKEFAHCLDVV---KGGGIFAIGDVVS---PKVKTTPMVPN---MPHYNVILEEVEVGGNPLDLPTSLLG--TG 310 (346)
Q Consensus 242 ~~~g~i~~~FS~~l~~~---~~~G~l~~Gg~d~---~~~~~~p~~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~--~~ 310 (346)
..++ ++||+||.+. ..+|+|+||++|+ +++.|+|++.+ ..+|.|++++|+|+++.+.++...+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 8999999873 4579999999998 57999999865 57999999999999998875443321 23
Q ss_pred CCCcEEEcccccccccCHHHH
Q 019088 311 DERGTIIDSGTTLAYLPPMLY 331 (346)
Q Consensus 311 ~~~~~iiDTGts~~~lp~~~~ 331 (346)
....+||||||+++++|++++
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~ 195 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY 195 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc
Confidence 467799999999999999876
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.1e-35 Score=274.98 Aligned_cols=212 Identities=30% Similarity=0.559 Sum_probs=177.6
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCC---CCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCC
Q 019088 82 LYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRC---PTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPS 158 (346)
Q Consensus 82 ~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C---~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~ 158 (346)
.|+++|.||||+|++.|++||||+++||++..|..| ..+ ..|++.+|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~-------~~y~~~~S~t~~~~~---------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASS-------GFYNPSKSSTFSNQG---------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTS-------C-BBGGGSTTEEEEE----------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccc-------cccccccccccccce----------------
Confidence 599999999999999999999999999999999766 332 689999999998865
Q ss_pred CCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCC-----
Q 019088 159 CSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQA----- 233 (346)
Q Consensus 159 C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~----- 233 (346)
+.+.+.|++|+ +.|.+++|+|.|++. .+.++.||++....+... .....+||||||++
T Consensus 58 ------~~~~~~y~~g~-~~G~~~~D~v~ig~~--------~~~~~~f~~~~~~~~~~~--~~~~~~GilGLg~~~~~~~ 120 (317)
T PF00026_consen 58 ------KPFSISYGDGS-VSGNLVSDTVSIGGL--------TIPNQTFGLADSYSGDPF--SPIPFDGILGLGFPSLSSS 120 (317)
T ss_dssp ------EEEEEEETTEE-EEEEEEEEEEEETTE--------EEEEEEEEEEEEEESHHH--HHSSSSEEEE-SSGGGSGG
T ss_pred ------eeeeeeccCcc-cccccccceEeeeec--------cccccceecccccccccc--ccccccccccccCCccccc
Confidence 78999999999 999999999999986 345799999998643211 13457999999963
Q ss_pred --CCcHHHHHHhcCCCC-CcceEeeccC-CCeeEEEeCCCCCCC----ceEeeCcCCCCceeEEEeEEEEcCEEecCCCC
Q 019088 234 --NSSLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSPK----VKTTPMVPNMPHYNVILEEVEVGGNPLDLPTS 305 (346)
Q Consensus 234 --~~s~~~~l~~~g~i~-~~FS~~l~~~-~~~G~l~~Gg~d~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~ 305 (346)
..+++++|+++|+|. ++||++|.+. ...|.|+||++|+++ +.|+|+. ...+|.+.+++|.+++....
T Consensus 121 ~~~~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~---- 195 (317)
T PF00026_consen 121 STYPTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVF---- 195 (317)
T ss_dssp GTS-SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEE----
T ss_pred ccCCcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-cccccccccccccccccccc----
Confidence 357999999999997 9999999986 357999999999764 8999998 78899999999999998321
Q ss_pred CcCCCCCCcEEEcccccccccCHHHHHHHHHHHHHH
Q 019088 306 LLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFW 341 (346)
Q Consensus 306 ~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~ 341 (346)
......++||||++++++|.+++++|++.+...
T Consensus 196 ---~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~ 228 (317)
T PF00026_consen 196 ---SSSGQQAILDTGTSYIYLPRSIFDAIIKALGGS 228 (317)
T ss_dssp ---EEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTE
T ss_pred ---cccceeeecccccccccccchhhHHHHhhhccc
Confidence 112345999999999999999999999998753
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=9.8e-34 Score=261.43 Aligned_cols=185 Identities=28% Similarity=0.493 Sum_probs=158.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCCC
Q 019088 82 LYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSP 161 (346)
Q Consensus 82 ~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~~ 161 (346)
.|+++|.||||+|++.|+|||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999996
Q ss_pred CccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCC------
Q 019088 162 GVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANS------ 235 (346)
Q Consensus 162 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~------ 235 (346)
.|.+.|++|+.+.|.+++|+|+|++. .+.++.|||+++.. ..+||||||++..
T Consensus 31 ----~~~~~Y~~g~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~---------~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 ----DFSISYGDGTSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS---------SDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred ----eeEEEeccCCcEEEEEEEEEEEECCe--------EecceEEEEEecCC---------CCcceeeECCCCCcccccC
Confidence 35678999777999999999999885 34579999999842 3589999999775
Q ss_pred -----cHHHHHHhcCCCC-CcceEeeccC-CCeeEEEeCCCCCC----CceEeeCcCCC-----CceeEEEeEEEEcCEE
Q 019088 236 -----SLLSQLAAAGNVR-KEFAHCLDVV-KGGGIFAIGDVVSP----KVKTTPMVPNM-----PHYNVILEEVEVGGNP 299 (346)
Q Consensus 236 -----s~~~~l~~~g~i~-~~FS~~l~~~-~~~G~l~~Gg~d~~----~~~~~p~~~~~-----~~w~v~l~~i~v~~~~ 299 (346)
+|++||+++|+|+ ++||+||.+. ..+|.|+||++|+. ++.|+|+..+. .+|.|.+++|+++++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 7999999999997 9999999975 35799999999975 48999998653 6899999999999988
Q ss_pred ecCCCCCcCCCCCCcEEEcccccccccCHHHHHHHHHHHHHHH
Q 019088 300 LDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQFRFWI 342 (346)
Q Consensus 300 ~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~~ 342 (346)
+..+. ......++|||||+++++|.+++++|++++.+..
T Consensus 170 ~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~ 208 (295)
T cd05474 170 GNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATY 208 (295)
T ss_pred Ccccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEE
Confidence 64321 2245679999999999999999999999987654
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=2.8e-31 Score=223.65 Aligned_cols=162 Identities=40% Similarity=0.721 Sum_probs=131.5
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCCCC
Q 019088 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPG 162 (346)
Q Consensus 83 Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~~~ 162 (346)
|+++|.||||+|++.|+|||||+++|++|. .+.|+|.+|+||+.++|.++.|...++.....|..+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~--------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~ 66 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP--------------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSN 66 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCES
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC--------------CcccCCccCCcccccCCCCcchhhcccccccCCCCc
Confidence 899999999999999999999999999982 169999999999999999999998776533344557
Q ss_pred ccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHHHHH
Q 019088 163 VRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLA 242 (346)
Q Consensus 163 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~ 242 (346)
+.|.|.+.|++++.+.|.+++|+|+++...... ..+.++.|||+....+.+ ...+||||||+.+.||+.||.
T Consensus 67 ~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~-----~~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 67 NSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLF-----YGADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSS-----TTEEEEEE-SSSTTSHHHHHH
T ss_pred CcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCC-----cCCCcccccCCCcccHHHHHH
Confidence 789999999999999999999999999864432 235689999999988655 368999999999999999999
Q ss_pred hcCCCCCcceEeecc--CCCeeEEEeCC
Q 019088 243 AAGNVRKEFAHCLDV--VKGGGIFAIGD 268 (346)
Q Consensus 243 ~~g~i~~~FS~~l~~--~~~~G~l~~Gg 268 (346)
++ ..++||+||.+ ....|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 88 55899999998 26789999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=2.3e-23 Score=163.63 Aligned_cols=108 Identities=36% Similarity=0.659 Sum_probs=90.5
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCcccccc-CCCCCCCcceecCCcccccccCCCCCCCCCCCc
Q 019088 85 TKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLF-DPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGV 163 (346)
Q Consensus 85 ~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y-~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~~~~ 163 (346)
++|.||||||++.|+|||||+++||+|..|..|..+.. +.| +|++|++++...
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~-----~~~~~~~~sst~~~~~--------------------- 54 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSH-----SSYDDPSASSTYSDNG--------------------- 54 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccc-----cccCCcCCCCCCCCCC---------------------
Confidence 47999999999999999999999999999987754432 355 999999988754
Q ss_pred cceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeec
Q 019088 164 RCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGF 230 (346)
Q Consensus 164 ~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGL 230 (346)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||+....+.+. .....+|||||
T Consensus 55 -~~~~~~Y~~g~-~~g~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~--~~~~~~GilGL 109 (109)
T cd05470 55 -CTFSITYGTGS-LSGGLSTDTVSIGDI--------EVVGQAFGCATDEPGATF--LPALFDGILGL 109 (109)
T ss_pred -cEEEEEeCCCe-EEEEEEEEEEEECCE--------EECCEEEEEEEecCCccc--cccccccccCC
Confidence 79999999997 789999999999875 345799999999877542 23568999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=98.74 E-value=3.2e-08 Score=83.03 Aligned_cols=60 Identities=40% Similarity=0.695 Sum_probs=49.8
Q ss_pred ceeEEEeEEEEcCEEecCCCCCcCC-CCCCcEEEcccccccccCHHHHHHHHHHHHHHHhc
Q 019088 285 HYNVILEEVEVGGNPLDLPTSLLGT-GDERGTIIDSGTTLAYLPPMLYDLVLSQFRFWIAS 344 (346)
Q Consensus 285 ~w~v~l~~i~v~~~~~~~~~~~~~~-~~~~~~iiDTGts~~~lp~~~~~~l~~~l~~~~~~ 344 (346)
+|.|++.+|+||++++.++...|+. +....++|||||++++||+++|++|.++|.+++..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~ 61 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGA 61 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhh
Confidence 5999999999999999998887642 34678999999999999999999999999998865
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.95 E-value=2.7e-05 Score=58.75 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=60.6
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCCCCC
Q 019088 82 LYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSP 161 (346)
Q Consensus 82 ~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~C~~ 161 (346)
.|++++.|+ ++++.+++|||++.+|+.......+... + .
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~~---------~--------~---------------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGLP---------L--------T---------------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCCC---------c--------c----------------------
Confidence 589999999 6999999999999999976421111100 0 0
Q ss_pred CccceeEEEeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEeeecccCCCCCCCCCCcceeeecCC
Q 019088 162 GVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQ 232 (346)
Q Consensus 162 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~ 232 (346)
......+...+|.........+.+++++.. ..++.+........ ..+||||+.+
T Consensus 41 -~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~--------~~~~~~~v~d~~~~--------~~~gIlG~d~ 94 (96)
T cd05483 41 -LGGKVTVQTANGRVRAARVRLDSLQIGGIT--------LRNVPAVVLPGDAL--------GVDGLLGMDF 94 (96)
T ss_pred -CCCcEEEEecCCCccceEEEcceEEECCcE--------EeccEEEEeCCccc--------CCceEeChHH
Confidence 013456666777756666668899998752 23455554443211 3689999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.10 E-value=0.03 Score=44.39 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.7
Q ss_pred CCeeEEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 019088 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNC 111 (346)
Q Consensus 79 ~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~ 111 (346)
.++.|++++.|. ++++.++||||++.+-+..
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 478899999998 6899999999999998865
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.54 E-value=0.12 Score=38.00 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=21.4
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCC
Q 019088 85 TKVGLGTPTDEYYVQVDTGSDLLWVNCA 112 (346)
Q Consensus 85 ~~i~iGtP~q~~~v~lDTGS~~~Wv~~~ 112 (346)
+++.|+ .+++.+++|||++.+.+...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 357777 58999999999998888654
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.02 E-value=0.48 Score=37.64 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=28.3
Q ss_pred CCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 019088 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAG 113 (346)
Q Consensus 79 ~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~ 113 (346)
....+++++.|+ ++++.+++|||++.+++....
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~ 45 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKAC 45 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHH
Confidence 456789999999 689999999999999997643
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.29 E-value=0.098 Score=39.01 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=25.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 019088 83 YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAG 113 (346)
Q Consensus 83 Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~ 113 (346)
|++++.|+ ++++.+++||||+.+++....
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 699999999999999998654
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.63 E-value=0.35 Score=38.28 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCceeEEEeEEEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHH
Q 019088 283 MPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 283 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l 334 (346)
.++|.++ +.|+|+.+. ++||||++.+.++.++.+++
T Consensus 9 ~g~~~v~---~~InG~~~~-------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR-------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 4567665 678888653 89999999999999998876
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=91.21 E-value=0.37 Score=34.25 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=30.2
Q ss_pred CCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC
Q 019088 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCS 115 (346)
Q Consensus 79 ~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~ 115 (346)
..+.+++++.|| ++.+.+++|||++..+|+...+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 468899999999 59999999999999999876543
No 34
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=91.17 E-value=4.3 Score=38.19 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=33.3
Q ss_pred EeCCCCeEeEEEEEEEEEEcccCCCccccCCCceeeEEe----------eecccCCCCCCCCCCcceeeecCCC
Q 019088 170 TYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGC----------GNRQSGDLGSSTDAAVDGILGFGQA 233 (346)
Q Consensus 170 ~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~----------~~~~~~~~~~~~~~~~~GilGLg~~ 233 (346)
.|++|. .-|-+.+-.|+|++.... .++-|.++- ..... ..........+||||+|.-
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge~A~-----~iPiQvI~D~~~~~~P~sC~~~g~-~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGETAS-----SIPIQVIGDSAAPSVPSSCSNSGA-SMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCcc-cccceEEEEEEEcCeecc-----ccCEEEEcCCCCCCCCchhhcCCC-CCCCcccccCceEEeecCC
Confidence 466766 578899999999986433 233344432 11111 1111124567999999873
No 35
>PF13650 Asp_protease_2: Aspartyl protease
Probab=89.31 E-value=0.51 Score=34.48 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=24.5
Q ss_pred EEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHH
Q 019088 293 VEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 293 i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l 334 (346)
++|+|+++. ++||||++.+.+++++++++
T Consensus 3 v~vng~~~~-------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------------EEEcCCCCcEEECHHHHHHc
Confidence 677887653 89999999999999998875
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=88.84 E-value=0.73 Score=34.22 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=25.9
Q ss_pred EEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHHH
Q 019088 293 VEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVL 335 (346)
Q Consensus 293 i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~ 335 (346)
+.|+|+.+. +++|||++.+.++.+.+.++-
T Consensus 5 ~~Ing~~i~-------------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 5 LLVNGKPLK-------------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEECCEEEE-------------EEEcCCcceEEeCHHHHHHhC
Confidence 778888874 799999999999999988753
No 37
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=88.47 E-value=0.9 Score=33.54 Aligned_cols=30 Identities=20% Similarity=0.490 Sum_probs=24.7
Q ss_pred EEEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHH
Q 019088 292 EVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 292 ~i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l 334 (346)
.+.|+++.+. +++|||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~~-------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 3677877663 89999999999999887765
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.36 E-value=1.3 Score=31.48 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=25.3
Q ss_pred EEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHH
Q 019088 293 VEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 293 i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l 334 (346)
+.|+++.+. +++|||++-.+++.+..+.+
T Consensus 13 ~~I~g~~~~-------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------------EEEeCCCcceecCHHHHHHh
Confidence 678887763 89999999999999999886
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=84.82 E-value=1.4 Score=33.22 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=23.6
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 019088 84 FTKVGLGTPTDEYYVQVDTGSDLLWVNCAG 113 (346)
Q Consensus 84 ~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~ 113 (346)
+++|.|. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5678888 589999999999999987643
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=83.77 E-value=1.3 Score=32.55 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.7
Q ss_pred EEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHH
Q 019088 293 VEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 293 i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l 334 (346)
+.|||+.+. +++|||.+.+.++.+..+.+
T Consensus 3 v~InG~~~~-------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------------EEEECCCCeEEECHHHhhhc
Confidence 677888764 79999999999999998764
No 41
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=80.16 E-value=6.5 Score=33.89 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=51.4
Q ss_pred CCeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCcccccccCCCCCCC
Q 019088 79 ATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPS 158 (346)
Q Consensus 79 ~~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~~~~ 158 (346)
.+|.|+++..|- +|++.+++|||.+.+-++..+-.. --||....
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-----------lGid~~~l----------------------- 145 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-----------LGIDLNSL----------------------- 145 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-----------hCCCcccc-----------------------
Confidence 578999999998 799999999999998887643110 12332210
Q ss_pred CCCCccceeEEEeCCCCeEeEEEEEEEEEEcccCC
Q 019088 159 CSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASG 193 (346)
Q Consensus 159 C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~ 193 (346)
+.++.+.-..|....-.+--|.|.||+...
T Consensus 146 -----~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~ 175 (215)
T COG3577 146 -----DYTITVSTANGRARAAPVTLDRVQIGGIRV 175 (215)
T ss_pred -----CCceEEEccCCccccceEEeeeEEEccEEE
Confidence 135555566777444567889999998643
No 42
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=79.08 E-value=2.4 Score=31.08 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=21.4
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCCC
Q 019088 86 KVGLGTPTDEYYVQVDTGSDLLWVNCAG 113 (346)
Q Consensus 86 ~i~iGtP~q~~~v~lDTGS~~~Wv~~~~ 113 (346)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 689999999999999997644
No 43
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=77.29 E-value=3.2 Score=32.85 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=24.2
Q ss_pred EEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHH
Q 019088 293 VEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 293 i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l 334 (346)
+.|+|+.+. ++||||++.+.++++..+++
T Consensus 21 ~~Ing~~~~-------------~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPVK-------------AFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEEE-------------EEEeCCCceEEeCHHHHHHc
Confidence 667777653 89999999999999998863
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=77.09 E-value=5.1 Score=34.52 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=30.3
Q ss_pred CCCceeEEEeEEEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHH
Q 019088 282 NMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 282 ~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l 334 (346)
.++||.++ ..|||+.+. .++|||.|.+.++.+....+
T Consensus 102 ~~GHF~a~---~~VNGk~v~-------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEAN---GRVNGKKVD-------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEEE---EEECCEEEE-------------EEEecCcceeecCHHHHHHh
Confidence 35678766 789999885 79999999999999887654
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=75.54 E-value=2.1 Score=32.20 Aligned_cols=28 Identities=14% Similarity=0.498 Sum_probs=22.4
Q ss_pred EEEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHH
Q 019088 292 EVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYD 332 (346)
Q Consensus 292 ~i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~ 332 (346)
.|.++|+.+. ++||||+..+.++.+.+.
T Consensus 9 ~v~i~g~~i~-------------~LlDTGA~vsiI~~~~~~ 36 (100)
T PF00077_consen 9 TVKINGKKIK-------------ALLDTGADVSIISEKDWK 36 (100)
T ss_dssp EEEETTEEEE-------------EEEETTBSSEEESSGGSS
T ss_pred EEeECCEEEE-------------EEEecCCCcceecccccc
Confidence 4677887763 899999999999987653
No 46
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=74.63 E-value=4.2 Score=30.11 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.1
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCC
Q 019088 86 KVGLGTPTDEYYVQVDTGSDLLWVNCA 112 (346)
Q Consensus 86 ~i~iGtP~q~~~v~lDTGS~~~Wv~~~ 112 (346)
.+.|+ +|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45677 79999999999999999753
No 47
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=70.02 E-value=4.8 Score=30.11 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.8
Q ss_pred cEEEcccccccccCHHHHHHHH
Q 019088 314 GTIIDSGTTLAYLPPMLYDLVL 335 (346)
Q Consensus 314 ~~iiDTGts~~~lp~~~~~~l~ 335 (346)
.+.+|||++...+|...+..+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 3899999999999999998875
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=64.64 E-value=7.6 Score=30.84 Aligned_cols=30 Identities=13% Similarity=0.377 Sum_probs=24.0
Q ss_pred EEEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHHH
Q 019088 292 EVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 292 ~i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~l 334 (346)
.++++|+.+. |+||||+..+.++.+..+++
T Consensus 28 ~~~ing~~vk-------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------------EEEeCCCCccccCHHHHHHc
Confidence 3778998874 99999999999999998873
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=63.27 E-value=10 Score=31.51 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=22.4
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 019088 84 FTKVGLGTPTDEYYVQVDTGSDLLWVNCA 112 (346)
Q Consensus 84 ~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~ 112 (346)
...+.++.-..++.++|||||+..++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34455555578999999999999988763
No 50
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=59.74 E-value=5.8 Score=31.23 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.4
Q ss_pred EEEccccc-ccccCHHHHHHH
Q 019088 315 TIIDSGTT-LAYLPPMLYDLV 334 (346)
Q Consensus 315 ~iiDTGts-~~~lp~~~~~~l 334 (346)
.+||||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999986
No 51
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=57.93 E-value=7.1 Score=30.04 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.6
Q ss_pred CcEEEcccccccc-cCHHHHHHH
Q 019088 313 RGTIIDSGTTLAY-LPPMLYDLV 334 (346)
Q Consensus 313 ~~~iiDTGts~~~-lp~~~~~~l 334 (346)
-.+++|||.+... +|.++++.+
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHHc
Confidence 3489999999886 999998874
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=52.78 E-value=25 Score=27.93 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=25.2
Q ss_pred CeeEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCC
Q 019088 80 TGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCP 118 (346)
Q Consensus 80 ~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~ 118 (346)
....|++++|+ ++++...+|||...+-+...-+..|.
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 35679999999 69999999999999888764334453
No 53
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=43.17 E-value=31 Score=26.42 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=20.2
Q ss_pred EEEEeCCCCc----eEEEEEEcCCCcee-EeC
Q 019088 85 TKVGLGTPTD----EYYVQVDTGSDLLW-VNC 111 (346)
Q Consensus 85 ~~i~iGtP~q----~~~v~lDTGS~~~W-v~~ 111 (346)
+++.|..|.| ++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 5788888733 78999999998664 443
No 54
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=38.22 E-value=52 Score=27.46 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=18.5
Q ss_pred cEEEcccccccccCHHHHHHH
Q 019088 314 GTIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 314 ~~iiDTGts~~~lp~~~~~~l 334 (346)
.+++|||++......++.+.|
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 489999999999999888775
No 55
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=34.59 E-value=38 Score=24.57 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=10.3
Q ss_pred CCcchHHHHHHHHHHHHh
Q 019088 2 GGLRLLALVVVTVAVVHQ 19 (346)
Q Consensus 2 ~~~~~l~l~~~~~a~~~~ 19 (346)
|.+|+++|-++++.++-+
T Consensus 1 MaRRlwiLslLAVtLtVA 18 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVA 18 (100)
T ss_pred CchhhHHHHHHHHHHHHH
Confidence 456666665565555544
No 56
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=34.53 E-value=68 Score=21.60 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=17.5
Q ss_pred EEEcccccccccCHHHHHHH
Q 019088 315 TIIDSGTTLAYLPPMLYDLV 334 (346)
Q Consensus 315 ~iiDTGts~~~lp~~~~~~l 334 (346)
+++|||++...+..+.+...
T Consensus 12 ~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 12 ALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEcCCCcccccCHHHHHHc
Confidence 89999999999999887654
No 57
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=31.96 E-value=1e+02 Score=24.65 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=16.8
Q ss_pred EEEcccccccccCHHHHHH
Q 019088 315 TIIDSGTTLAYLPPMLYDL 333 (346)
Q Consensus 315 ~iiDTGts~~~lp~~~~~~ 333 (346)
++||||++-.++..+....
T Consensus 35 vLiDSGAThsFIs~~~a~~ 53 (135)
T PF08284_consen 35 VLIDSGATHSFISSSFAKK 53 (135)
T ss_pred EEEecCCCcEEccHHHHHh
Confidence 8999999999998887765
No 58
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=31.72 E-value=64 Score=24.58 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=23.1
Q ss_pred EEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHHHH
Q 019088 293 VEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDL 333 (346)
Q Consensus 293 i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~~~ 333 (346)
-+++|..++ |.+|||+-.+.+.+.-.+.
T Consensus 3 Ck~nG~~vk-------------AfVDsGaQ~timS~~caer 30 (103)
T cd05480 3 CQCAGKELR-------------ALVDTGCQYNLISAACLDR 30 (103)
T ss_pred eeECCEEEE-------------EEEecCCchhhcCHHHHHH
Confidence 456777663 8999999999999988876
No 59
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=30.27 E-value=74 Score=25.50 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=25.5
Q ss_pred CeeEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 019088 80 TGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCA 112 (346)
Q Consensus 80 ~~~Y~~~i~iGtP~q~~~v~lDTGS~~~Wv~~~ 112 (346)
...-.+.+.|.+ ++..+++|+|++..+|...
T Consensus 19 ~~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 19 PDVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CCeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 345677888885 8999999999999998653
No 60
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=30.02 E-value=72 Score=28.72 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=23.1
Q ss_pred eeEEEE---EEeCC---CCceEEEEEEcCCCceeEeCC
Q 019088 81 GLYFTK---VGLGT---PTDEYYVQVDTGSDLLWVNCA 112 (346)
Q Consensus 81 ~~Y~~~---i~iGt---P~q~~~v~lDTGS~~~Wv~~~ 112 (346)
..|.++ |.||. +.....++||||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456655 57873 223467999999999999864
No 61
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.14 E-value=48 Score=24.96 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=7.2
Q ss_pred CcchHHHHHHHHHH
Q 019088 3 GLRLLALVVVTVAV 16 (346)
Q Consensus 3 ~~~~l~l~~~~~a~ 16 (346)
.++.++||+|++|+
T Consensus 2 aSK~~llL~l~LA~ 15 (95)
T PF07172_consen 2 ASKAFLLLGLLLAA 15 (95)
T ss_pred chhHHHHHHHHHHH
Confidence 46655555444443
No 62
>PLN03146 aspartyl protease family protein; Provisional
Probab=27.19 E-value=51 Score=32.13 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCCceeEEEeEEEEcCEEecCCCCCcCCCCCCcEEEcccccccccCH
Q 019088 282 NMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPP 328 (346)
Q Consensus 282 ~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~ 328 (346)
....|.++ |.||. |+. ...+++|||+.++++|-
T Consensus 81 ~~~~Y~v~---i~iGT-----Ppq------~~~vi~DTGS~l~Wv~C 113 (431)
T PLN03146 81 NGGEYLMN---ISIGT-----PPV------PILAIADTGSDLIWTQC 113 (431)
T ss_pred CCccEEEE---EEcCC-----CCc------eEEEEECCCCCcceEcC
Confidence 34567766 66664 222 23489999999999863
No 63
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=26.64 E-value=37 Score=25.21 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.0
Q ss_pred CCCcEEEcccccccccCHHHHHH
Q 019088 311 DERGTIIDSGTTLAYLPPMLYDL 333 (346)
Q Consensus 311 ~~~~~iiDTGts~~~lp~~~~~~ 333 (346)
.+...+||||+....+|....+.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~~ 30 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTKK 30 (89)
T ss_pred CCcEEEEeCCCceEeeccccccc
Confidence 35568999999999999887654
No 64
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=23.41 E-value=89 Score=28.79 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=22.2
Q ss_pred eeEEEE---EEeCCC-----CceEEEEEEcCCCceeEeCC
Q 019088 81 GLYFTK---VGLGTP-----TDEYYVQVDTGSDLLWVNCA 112 (346)
Q Consensus 81 ~~Y~~~---i~iGtP-----~q~~~v~lDTGS~~~Wv~~~ 112 (346)
..|.++ |.||.. .+...+++|||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 445554 577742 23457999999999999863
No 65
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=22.23 E-value=54 Score=16.52 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=7.3
Q ss_pred CCCcchHHHHHH
Q 019088 1 MGGLRLLALVVV 12 (346)
Q Consensus 1 m~~~~~l~l~~~ 12 (346)
||++.+.+.+++
T Consensus 1 MMk~vIIlvvLL 12 (19)
T PF13956_consen 1 MMKLVIILVVLL 12 (19)
T ss_pred CceehHHHHHHH
Confidence 777766655444
No 66
>PTZ00165 aspartyl protease; Provisional
Probab=22.00 E-value=50 Score=32.79 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=23.4
Q ss_pred CceeEEEeEEEEcCEEecCCCCCcCCCCCCcEEEcccccccccCHHHH
Q 019088 284 PHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLY 331 (346)
Q Consensus 284 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDTGts~~~lp~~~~ 331 (346)
..|..+ |.||. |++.| .+++|||++.+++|....
T Consensus 119 ~~Y~~~---I~IGT-----PpQ~f------~Vv~DTGSS~lWVps~~C 152 (482)
T PTZ00165 119 SQYFGE---IQVGT-----PPKSF------VVVFDTGSSNLWIPSKEC 152 (482)
T ss_pred CeEEEE---EEeCC-----CCceE------EEEEeCCCCCEEEEchhc
Confidence 456554 67775 33333 499999999999997543
No 67
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=20.89 E-value=94 Score=27.57 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=25.3
Q ss_pred CeeEEEE---EEeCC-----CCceEEEEEEcCCCceeEeCCCC
Q 019088 80 TGLYFTK---VGLGT-----PTDEYYVQVDTGSDLLWVNCAGC 114 (346)
Q Consensus 80 ~~~Y~~~---i~iGt-----P~q~~~v~lDTGS~~~Wv~~~~C 114 (346)
...|.+. |.||. ......++||||++.+++|...+
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 4456554 46664 24577999999999999997543
Done!