BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019091
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWA|A Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya.
pdb|2FAW|A Chain A, Crystal Structure Of Papaya Glutaminyl Cyclase
pdb|2FAW|B Chain B, Crystal Structure Of Papaya Glutaminyl Cyclase
Length = 266
Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust.
Identities = 170/255 (66%), Positives = 208/255 (81%), Gaps = 5/255 (1%)
Query: 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM 146
S +Y ++V+NEFPHDP AFTQGL+YAENDTLFESTGLYGRSSVR+VAL+TGKVE I++M
Sbjct: 3 SSRVYIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM 62
Query: 147 EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGS 206
+ SYFGEGLTLL EKL+QV WL+ GFIYD+ L+ ++ FTHQMKDGWGLATDGK+L+GS
Sbjct: 63 DDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGS 122
Query: 207 DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG 266
DG+S+LY+IDP T K+I+K V+Y G V LNELE+I GEVWAN+WQTDCIARIS +DG
Sbjct: 123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDG 182
Query: 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRER 326
+LGW+LLPNLR++L+ G+ IDVLNGIAWD RIFVTGKLWPKL+EI L ++
Sbjct: 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVRHRI 242
Query: 327 KDGFNVDTIIEQLCL 341
DG+ IE+ CL
Sbjct: 243 PDGY-----IERHCL 252
>pdb|3MBR|X Chain X, Crystal Structure Of The Glutaminyl Cyclase From
Xanthomonas Campestris
Length = 243
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 138/229 (60%), Gaps = 2/229 (0%)
Query: 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE 153
+VV +PHD AFT+GL Y L+ESTG GRSSVR+V LETG++ ++ YFG
Sbjct: 10 RVVKRYPHDTTAFTEGLFYLRGH-LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGA 68
Query: 154 GLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLY 213
G+ ++L Q+TW GF+YD L F + +GW L +D L+ SDG++++
Sbjct: 69 GIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP-GEGWALTSDDSHLYMSDGTAVIR 127
Query: 214 QIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVL 273
++DP TL+ + V GR + NLNELE++ GE+ ANVW T IARI G V+ W+
Sbjct: 128 KLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWID 187
Query: 274 LPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322
L L A + DVLNGIA+D+ +R+FVTGK WP LYEI L +
Sbjct: 188 LQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTPL 236
>pdb|3NOL|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Trigonal Form)
pdb|3NOM|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Monoclinic Form)
pdb|3NOM|B Chain B, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Monoclinic Form)
Length = 262
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 150/237 (63%), Gaps = 7/237 (2%)
Query: 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM 146
S IY Q+V+ +PHD +AFT+G Y N +ESTGL GRSS+R+V +E+GK ++
Sbjct: 25 SIPIYDYQIVHSYPHDTKAFTEGFFY-RNGYFYESTGLNGRSSIRKVDIESGKTLQQIEL 83
Query: 147 EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGS 206
YFGEG++ +K+ +TW GF+++ NL ++ F + +GWGL + + L S
Sbjct: 84 GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-GEGWGLTHNDQYLIMS 142
Query: 207 DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG 266
DG+ +L +DP++L +R V G E+ LNELE++ GE++ANVWQT+ I RI E G
Sbjct: 143 DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETG 202
Query: 267 VVLGWVLLPNLRERLVAAG--YNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321
V G + +L L AG + IDVLNGIAWD +R+FVTGKLWPK++EI L +
Sbjct: 203 KVTGII---DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLTQ 256
>pdb|3NOK|A Chain A, Crystal Structure Of Myxococcus Xanthus Glutaminyl Cyclase
pdb|3NOK|B Chain B, Crystal Structure Of Myxococcus Xanthus Glutaminyl Cyclase
Length = 268
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 5/237 (2%)
Query: 83 GVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEA 142
G Q P ++ E+PH AFTQGL++ + FESTG G ++R+++LE+ +
Sbjct: 33 GSVQEPVRRVAHIIREYPHATNAFTQGLVFHQGH-FFESTGHQG--TLRQLSLESAQPVW 89
Query: 143 INQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKV 202
+ ++ G+ F EGL GE+L+Q+TW + F + + E T +GWGL
Sbjct: 90 MERL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR-ERTTRYSGEGWGLCYWNGK 147
Query: 203 LFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARIS 262
L SDG +ML +P ++ V+ +G+ V +NELE G ++AN+W + + I
Sbjct: 148 LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEID 207
Query: 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319
G V+G + L + N VLNGIA + RIF+TGKLWP+L+E+ L
Sbjct: 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL 264
>pdb|2PYU|A Chain A, Structure Of The E. Coli Inosine Triphosphate
Pyrophosphatase Rgdb In Complex With Imp
Length = 219
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 123 GLYGRSS-VRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181
GL R S +++V L TG V + ++ GL ++ + V ++TG + +N +
Sbjct: 13 GLVPRGSHMQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAIL 72
Query: 182 KLEEFTH-----QMKDGWGLATDGKVLFGSDG 208
K + D GLA D VL G+ G
Sbjct: 73 KARHAAKVTALPAIADASGLAVD--VLGGAPG 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,986,581
Number of Sequences: 62578
Number of extensions: 428663
Number of successful extensions: 891
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 14
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)