Query 019091
Match_columns 346
No_of_seqs 151 out of 771
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:35:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05096 Glu_cyclase_2: Glutam 100.0 5E-74 1.1E-78 542.6 32.6 236 85-321 25-262 (264)
2 COG3823 Glutamine cyclotransfe 100.0 1.6E-67 3.4E-72 481.0 21.3 232 88-322 29-261 (262)
3 TIGR02658 TTQ_MADH_Hv methylam 99.8 3.9E-18 8.4E-23 168.7 27.0 210 92-319 36-329 (352)
4 TIGR02658 TTQ_MADH_Hv methylam 99.7 4.7E-16 1E-20 153.9 24.2 194 116-319 13-286 (352)
5 PRK11028 6-phosphogluconolacto 99.7 5.5E-15 1.2E-19 141.9 25.9 212 92-320 24-258 (330)
6 COG3391 Uncharacterized conser 99.7 4.4E-15 9.6E-20 147.7 23.3 197 105-320 74-283 (381)
7 PRK11028 6-phosphogluconolacto 99.7 7.3E-15 1.6E-19 141.0 24.1 210 92-320 69-304 (330)
8 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 4.2E-14 9.2E-19 129.4 27.5 211 93-319 21-236 (300)
9 PF02239 Cytochrom_D1: Cytochr 99.7 3E-15 6.5E-20 148.8 20.8 212 92-321 25-303 (369)
10 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 7.2E-14 1.6E-18 127.9 26.6 223 94-335 64-296 (300)
11 PF02239 Cytochrom_D1: Cytochr 99.6 4.4E-14 9.5E-19 140.5 22.4 186 117-319 7-201 (369)
12 COG3391 Uncharacterized conser 99.6 3.7E-13 8E-18 134.0 24.4 212 92-321 20-240 (381)
13 PF10282 Lactonase: Lactonase, 99.6 1.1E-12 2.3E-17 128.4 26.3 213 92-321 75-323 (345)
14 PF10282 Lactonase: Lactonase, 99.6 3E-12 6.5E-17 125.2 26.7 216 92-320 26-275 (345)
15 PLN02919 haloacid dehalogenase 99.6 1.5E-12 3.2E-17 144.7 27.2 203 108-319 627-887 (1057)
16 PF08450 SGL: SMP-30/Gluconola 99.5 4.9E-12 1.1E-16 117.0 25.4 177 108-307 43-243 (246)
17 PRK02888 nitrous-oxide reducta 99.5 3.6E-13 7.7E-18 140.8 16.5 184 114-313 202-455 (635)
18 PF08450 SGL: SMP-30/Gluconola 99.5 1.8E-11 3.9E-16 113.2 21.8 153 151-320 1-164 (246)
19 PRK02888 nitrous-oxide reducta 99.3 3.2E-11 6.9E-16 126.4 17.8 188 115-329 140-360 (635)
20 PLN02919 haloacid dehalogenase 99.3 6.7E-10 1.5E-14 123.8 26.7 208 105-319 568-832 (1057)
21 PF06977 SdiA-regulated: SdiA- 99.3 1.7E-09 3.6E-14 102.8 24.9 215 90-316 7-245 (248)
22 PF13360 PQQ_2: PQQ-like domai 99.3 9.8E-09 2.1E-13 92.8 26.8 203 94-320 14-230 (238)
23 PF13360 PQQ_2: PQQ-like domai 99.1 1.3E-07 2.9E-12 85.5 24.6 145 127-274 2-150 (238)
24 PF06433 Me-amine-dh_H: Methyl 99.0 8E-09 1.7E-13 101.9 16.9 122 159-280 2-142 (342)
25 COG3386 Gluconolactonase [Carb 99.0 3.5E-08 7.6E-13 96.5 21.2 201 96-320 59-298 (307)
26 cd00200 WD40 WD40 domain, foun 99.0 3.5E-07 7.6E-12 80.1 24.3 183 107-310 96-282 (289)
27 PF05096 Glu_cyclase_2: Glutam 99.0 6.6E-08 1.4E-12 92.6 21.1 164 92-261 77-258 (264)
28 cd00200 WD40 WD40 domain, foun 99.0 4.6E-07 9.9E-12 79.4 24.1 190 107-319 12-206 (289)
29 COG2706 3-carboxymuconate cycl 99.0 3.6E-08 7.9E-13 96.8 18.4 160 108-270 148-329 (346)
30 TIGR03300 assembly_YfgL outer 98.9 4E-07 8.6E-12 89.3 23.9 174 92-273 39-217 (377)
31 COG2706 3-carboxymuconate cycl 98.8 6.9E-07 1.5E-11 88.0 22.1 212 92-320 77-321 (346)
32 PRK11138 outer membrane biogen 98.8 9.2E-07 2E-11 87.8 23.3 157 111-274 66-233 (394)
33 PRK11138 outer membrane biogen 98.8 7.7E-07 1.7E-11 88.3 22.2 179 115-319 205-393 (394)
34 TIGR03300 assembly_YfgL outer 98.7 2.6E-06 5.6E-11 83.5 22.7 148 115-274 190-348 (377)
35 COG3386 Gluconolactonase [Carb 98.7 5.5E-07 1.2E-11 88.1 16.0 157 148-321 23-194 (307)
36 PTZ00421 coronin; Provisional 98.6 3.6E-05 7.7E-10 79.9 27.1 197 106-320 77-290 (493)
37 PRK05137 tolB translocation pr 98.6 1.3E-05 2.8E-10 80.9 22.7 190 108-320 205-412 (435)
38 PF07433 DUF1513: Protein of u 98.6 1.7E-05 3.7E-10 77.6 22.2 193 108-318 8-283 (305)
39 PRK04792 tolB translocation pr 98.6 1.9E-05 4E-10 80.5 23.0 191 109-319 222-424 (448)
40 PTZ00420 coronin; Provisional 98.5 4.1E-05 8.9E-10 80.8 25.6 201 105-319 75-292 (568)
41 PRK00178 tolB translocation pr 98.5 2.9E-05 6.3E-10 77.7 23.1 191 108-319 202-405 (430)
42 PRK04922 tolB translocation pr 98.5 1.9E-05 4.1E-10 79.7 21.8 192 108-320 207-411 (433)
43 PRK03629 tolB translocation pr 98.5 4.4E-05 9.5E-10 77.3 23.8 193 107-319 201-405 (429)
44 TIGR02800 propeller_TolB tol-p 98.5 6E-05 1.3E-09 74.3 23.7 180 108-309 193-384 (417)
45 cd00216 PQQ_DH Dehydrogenases 98.5 3E-05 6.4E-10 79.9 22.0 165 106-274 101-329 (488)
46 PRK04043 tolB translocation pr 98.5 4.8E-05 1E-09 77.3 23.1 191 109-321 192-401 (419)
47 COG4257 Vgb Streptogramin lyas 98.5 1.2E-05 2.7E-10 77.6 17.5 190 96-307 53-292 (353)
48 PRK02889 tolB translocation pr 98.4 5.3E-05 1.1E-09 76.5 22.5 192 108-319 199-402 (427)
49 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 6.5E-05 1.4E-09 78.5 22.5 202 108-317 114-414 (527)
50 PRK01742 tolB translocation pr 98.3 0.00017 3.7E-09 72.8 22.9 186 107-319 206-400 (429)
51 KOG2048 WD40 repeat protein [G 98.3 0.00032 6.9E-09 74.1 24.8 249 43-322 15-277 (691)
52 cd00216 PQQ_DH Dehydrogenases 98.3 8.8E-05 1.9E-09 76.4 20.6 159 111-274 58-274 (488)
53 PF06433 Me-amine-dh_H: Methyl 98.3 5E-05 1.1E-09 75.3 17.8 192 116-325 3-218 (342)
54 TIGR02800 propeller_TolB tol-p 98.3 0.00021 4.5E-09 70.5 21.9 183 117-319 158-353 (417)
55 PRK04792 tolB translocation pr 98.2 0.00012 2.6E-09 74.7 20.2 172 127-319 197-381 (448)
56 COG3204 Uncharacterized protei 98.2 0.00026 5.6E-09 69.0 20.6 210 90-309 71-302 (316)
57 KOG1446 Histone H3 (Lys4) meth 98.2 0.0003 6.5E-09 68.5 21.0 175 92-274 89-272 (311)
58 PF03022 MRJP: Major royal jel 98.2 0.00024 5.1E-09 68.9 20.1 192 108-312 4-258 (287)
59 PLN00181 protein SPA1-RELATED; 98.2 0.0017 3.6E-08 70.6 28.4 213 94-316 566-789 (793)
60 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 6.3E-05 1.4E-09 78.6 16.7 154 156-310 66-254 (527)
61 KOG0643 Translation initiation 98.2 0.00035 7.6E-09 67.4 20.2 192 94-310 43-252 (327)
62 KOG0266 WD40 repeat-containing 98.1 0.0002 4.4E-09 73.1 19.5 174 94-274 237-419 (456)
63 COG4257 Vgb Streptogramin lyas 98.1 0.00036 7.8E-09 67.7 19.7 204 95-325 94-352 (353)
64 PTZ00420 coronin; Provisional 98.1 0.00062 1.3E-08 72.0 22.5 201 106-324 127-350 (568)
65 PF06977 SdiA-regulated: SdiA- 98.1 6.4E-05 1.4E-09 71.7 12.9 116 192-320 25-149 (248)
66 TIGR02604 Piru_Ver_Nterm putat 98.0 0.00024 5.1E-09 70.6 17.0 180 92-317 3-210 (367)
67 PHA02713 hypothetical protein; 98.0 0.00075 1.6E-08 71.0 21.2 198 93-312 284-523 (557)
68 KOG0266 WD40 repeat-containing 98.0 0.00053 1.2E-08 70.1 19.3 201 103-320 202-409 (456)
69 PF02191 OLF: Olfactomedin-lik 98.0 0.0017 3.6E-08 62.1 21.3 191 115-319 30-248 (250)
70 PRK00178 tolB translocation pr 98.0 0.0017 3.8E-08 64.9 22.4 183 117-319 165-362 (430)
71 KOG1539 WD repeat protein [Gen 98.0 6.1E-05 1.3E-09 80.9 12.3 172 98-275 489-671 (910)
72 COG3823 Glutamine cyclotransfe 98.0 7.7E-05 1.7E-09 69.8 11.5 129 95-230 80-216 (262)
73 smart00284 OLF Olfactomedin-li 98.0 0.0018 3.9E-08 62.2 21.0 192 116-320 35-254 (255)
74 PRK04922 tolB translocation pr 98.0 0.0016 3.4E-08 65.9 21.6 173 127-319 183-367 (433)
75 PLN00181 protein SPA1-RELATED; 98.0 0.0029 6.3E-08 68.7 24.9 189 108-318 536-736 (793)
76 PRK03629 tolB translocation pr 97.9 0.0026 5.6E-08 64.5 22.7 182 117-319 166-362 (429)
77 PRK05137 tolB translocation pr 97.9 0.0032 7E-08 63.6 23.2 172 127-319 181-365 (435)
78 PRK01029 tolB translocation pr 97.9 0.0028 6.1E-08 64.4 22.4 190 111-320 191-403 (428)
79 PTZ00421 coronin; Provisional 97.9 0.0097 2.1E-07 62.0 26.5 196 108-324 129-346 (493)
80 KOG0318 WD40 repeat stress pro 97.9 0.0018 4E-08 67.0 20.1 160 98-267 231-395 (603)
81 KOG0291 WD40-repeat-containing 97.9 0.0037 8.1E-08 67.1 22.7 199 104-310 392-603 (893)
82 TIGR03074 PQQ_membr_DH membran 97.9 0.0028 6E-08 69.3 22.5 197 116-318 261-591 (764)
83 COG1520 FOG: WD40-like repeat 97.8 0.0018 3.9E-08 63.9 18.7 156 112-272 65-225 (370)
84 COG3490 Uncharacterized protei 97.8 0.00096 2.1E-08 65.1 16.0 198 94-303 59-341 (366)
85 KOG1446 Histone H3 (Lys4) meth 97.8 0.0067 1.4E-07 59.4 21.6 201 103-319 13-261 (311)
86 KOG4441 Proteins containing BT 97.8 0.0018 4E-08 68.4 19.2 197 92-312 312-533 (571)
87 KOG1273 WD40 repeat protein [G 97.8 0.0012 2.6E-08 65.0 16.1 141 103-252 65-214 (405)
88 PRK02889 tolB translocation pr 97.8 0.0057 1.2E-07 61.9 21.6 182 117-319 166-359 (427)
89 TIGR02276 beta_rpt_yvtn 40-res 97.7 7.9E-05 1.7E-09 50.5 5.5 34 198-231 1-35 (42)
90 KOG4499 Ca2+-binding protein R 97.7 0.00089 1.9E-08 63.8 14.1 84 189-275 158-252 (310)
91 KOG2055 WD40 repeat protein [G 97.7 0.0015 3.2E-08 66.8 16.1 118 108-230 261-386 (514)
92 KOG0278 Serine/threonine kinas 97.7 0.0012 2.6E-08 63.4 14.5 203 95-321 93-298 (334)
93 KOG0291 WD40-repeat-containing 97.7 0.0097 2.1E-07 64.1 22.6 182 106-308 352-539 (893)
94 KOG0315 G-protein beta subunit 97.6 0.012 2.5E-07 56.6 20.1 135 94-233 31-180 (311)
95 PF05694 SBP56: 56kDa selenium 97.6 0.00079 1.7E-08 68.8 12.7 156 92-252 166-392 (461)
96 KOG0279 G protein beta subunit 97.6 0.013 2.8E-07 56.9 20.0 186 96-307 56-249 (315)
97 TIGR03074 PQQ_membr_DH membran 97.6 0.017 3.7E-07 63.3 23.3 111 115-229 194-355 (764)
98 PRK01742 tolB translocation pr 97.6 0.0075 1.6E-07 61.0 19.1 166 127-319 183-360 (429)
99 KOG0310 Conserved WD40 repeat- 97.6 0.017 3.6E-07 59.4 21.3 183 108-312 114-302 (487)
100 KOG0279 G protein beta subunit 97.5 0.0093 2E-07 57.9 18.3 187 108-307 109-301 (315)
101 KOG1407 WD40 repeat protein [F 97.5 0.0077 1.7E-07 58.1 17.5 177 109-308 111-291 (313)
102 KOG2111 Uncharacterized conser 97.5 0.016 3.4E-07 57.2 19.8 176 123-319 70-257 (346)
103 TIGR03548 mutarot_permut cycli 97.5 0.014 3.1E-07 56.4 19.6 128 93-223 53-199 (323)
104 TIGR03118 PEPCTERM_chp_1 conse 97.5 0.01 2.3E-07 58.4 18.2 137 148-299 138-307 (336)
105 KOG2110 Uncharacterized conser 97.5 0.027 6E-07 56.4 21.3 173 128-321 68-251 (391)
106 TIGR02276 beta_rpt_yvtn 40-res 97.5 0.00037 8E-09 47.1 5.8 39 158-197 2-40 (42)
107 PF05694 SBP56: 56kDa selenium 97.5 0.019 4.1E-07 59.0 20.3 195 114-310 139-394 (461)
108 KOG0318 WD40 repeat stress pro 97.5 0.022 4.8E-07 59.3 20.8 195 104-319 190-391 (603)
109 PLN02153 epithiospecifier prot 97.4 0.081 1.7E-06 51.7 24.1 155 109-267 27-228 (341)
110 KOG0278 Serine/threonine kinas 97.4 0.0072 1.6E-07 58.2 15.9 142 117-267 156-300 (334)
111 KOG1407 WD40 repeat protein [F 97.4 0.011 2.4E-07 57.0 17.2 173 108-307 24-207 (313)
112 PHA02713 hypothetical protein; 97.4 0.0047 1E-07 65.0 16.3 153 109-267 346-536 (557)
113 KOG0282 mRNA splicing factor [ 97.4 0.0022 4.7E-08 65.8 13.0 209 93-317 248-459 (503)
114 PHA03098 kelch-like protein; P 97.4 0.032 6.9E-07 57.7 21.7 153 109-267 289-467 (534)
115 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.014 3E-07 56.6 17.3 148 110-267 16-168 (354)
116 KOG0296 Angio-associated migra 97.4 0.013 2.8E-07 58.6 17.4 157 108-273 110-272 (399)
117 KOG0286 G-protein beta subunit 97.4 0.059 1.3E-06 52.8 21.6 194 94-307 88-291 (343)
118 PF07433 DUF1513: Protein of u 97.4 0.0072 1.6E-07 59.4 15.6 123 145-274 2-156 (305)
119 PHA02790 Kelch-like protein; P 97.4 0.015 3.3E-07 60.0 18.5 151 109-267 313-473 (480)
120 KOG0303 Actin-binding protein 97.3 0.0051 1.1E-07 62.0 14.3 181 116-318 94-292 (472)
121 KOG1539 WD repeat protein [Gen 97.3 0.015 3.4E-07 63.0 18.4 164 127-310 469-638 (910)
122 KOG0306 WD40-repeat-containing 97.3 0.032 6.9E-07 60.2 20.5 194 105-309 374-612 (888)
123 KOG4441 Proteins containing BT 97.3 0.0087 1.9E-07 63.4 16.6 153 109-267 375-549 (571)
124 COG1520 FOG: WD40-like repeat 97.3 0.037 7.9E-07 54.7 20.1 159 109-275 106-279 (370)
125 PHA03098 kelch-like protein; P 97.3 0.018 3.8E-07 59.5 18.1 153 109-267 337-514 (534)
126 PRK04043 tolB translocation pr 97.3 0.02 4.3E-07 58.3 18.1 155 110-274 238-409 (419)
127 PF05935 Arylsulfotrans: Aryls 97.3 0.023 4.9E-07 58.9 18.6 154 159-319 113-300 (477)
128 KOG2106 Uncharacterized conser 97.2 0.056 1.2E-06 56.3 20.7 187 100-319 285-476 (626)
129 PF13449 Phytase-like: Esteras 97.2 0.046 9.9E-07 53.6 19.7 114 152-266 87-253 (326)
130 KOG2055 WD40 repeat protein [G 97.2 0.05 1.1E-06 56.0 19.6 189 105-313 214-410 (514)
131 PLN02153 epithiospecifier prot 97.1 0.053 1.1E-06 53.0 18.6 151 115-267 85-287 (341)
132 KOG0315 G-protein beta subunit 97.1 0.032 7E-07 53.7 16.3 144 116-269 10-159 (311)
133 COG4946 Uncharacterized protei 97.1 0.028 6.1E-07 58.2 16.9 178 103-306 320-505 (668)
134 COG3490 Uncharacterized protei 97.1 0.023 5E-07 55.7 15.6 132 137-275 57-220 (366)
135 KOG0275 Conserved WD40 repeat- 97.1 0.0061 1.3E-07 60.4 11.5 204 79-303 278-493 (508)
136 KOG0973 Histone transcription 97.1 0.07 1.5E-06 59.2 20.7 218 86-321 112-356 (942)
137 PF02191 OLF: Olfactomedin-lik 97.0 0.027 5.9E-07 53.8 15.3 135 108-250 72-235 (250)
138 KOG1520 Predicted alkaloid syn 96.9 0.017 3.6E-07 58.2 13.3 114 189-308 115-237 (376)
139 KOG1036 Mitotic spindle checkp 96.9 0.26 5.7E-06 48.5 20.6 199 108-321 58-263 (323)
140 COG3204 Uncharacterized protei 96.9 0.013 2.8E-07 57.4 11.7 115 194-321 91-213 (316)
141 KOG0293 WD40 repeat-containing 96.8 0.026 5.7E-07 57.4 14.0 201 94-315 302-508 (519)
142 KOG4499 Ca2+-binding protein R 96.8 0.011 2.4E-07 56.6 10.7 97 109-207 162-273 (310)
143 PF07995 GSDH: Glucose / Sorbo 96.8 0.073 1.6E-06 52.4 17.0 61 245-316 270-331 (331)
144 TIGR03032 conserved hypothetic 96.8 0.036 7.7E-07 54.9 14.5 115 153-277 155-303 (335)
145 PF02897 Peptidase_S9_N: Proly 96.8 0.16 3.4E-06 50.6 19.4 197 109-321 128-355 (414)
146 TIGR02604 Piru_Ver_Nterm putat 96.8 0.14 3.1E-06 50.8 18.9 105 105-216 72-211 (367)
147 smart00284 OLF Olfactomedin-li 96.8 0.13 2.9E-06 49.5 17.9 135 108-250 77-240 (255)
148 TIGR03547 muta_rot_YjhT mutatr 96.8 0.4 8.8E-06 46.6 21.8 99 109-208 58-208 (346)
149 KOG0286 G-protein beta subunit 96.8 0.62 1.4E-05 45.9 22.3 204 93-318 45-259 (343)
150 KOG0643 Translation initiation 96.8 0.35 7.6E-06 47.1 20.2 192 104-318 11-218 (327)
151 PLN02193 nitrile-specifier pro 96.7 0.38 8.1E-06 49.6 22.1 152 115-268 228-414 (470)
152 KOG0294 WD40 repeat-containing 96.7 0.14 3E-06 50.7 17.6 171 92-274 116-296 (362)
153 KOG0294 WD40 repeat-containing 96.7 0.098 2.1E-06 51.7 16.4 157 160-341 53-214 (362)
154 TIGR03606 non_repeat_PQQ dehyd 96.7 0.15 3.2E-06 52.9 18.4 50 86-141 15-64 (454)
155 PF02897 Peptidase_S9_N: Proly 96.7 0.48 1E-05 47.1 21.6 197 109-319 174-403 (414)
156 PF08662 eIF2A: Eukaryotic tra 96.7 0.081 1.8E-06 48.1 14.8 98 107-207 62-162 (194)
157 PLN02193 nitrile-specifier pro 96.7 0.4 8.6E-06 49.4 21.6 156 109-268 170-355 (470)
158 KOG0281 Beta-TrCP (transducin 96.6 0.027 5.9E-07 56.3 12.2 192 108-328 241-436 (499)
159 COG5276 Uncharacterized conser 96.6 0.42 9.2E-06 47.3 20.1 155 108-276 90-256 (370)
160 KOG0268 Sof1-like rRNA process 96.5 0.023 5.1E-07 56.9 11.0 171 126-320 87-259 (433)
161 KOG0310 Conserved WD40 repeat- 96.5 0.1 2.2E-06 53.9 15.8 179 108-307 72-256 (487)
162 PF13449 Phytase-like: Esteras 96.5 0.03 6.5E-07 54.9 11.6 116 194-310 25-167 (326)
163 KOG0289 mRNA splicing factor [ 96.5 0.29 6.4E-06 50.2 18.7 192 98-308 299-495 (506)
164 PF03022 MRJP: Major royal jel 96.5 0.062 1.3E-06 52.1 13.4 113 210-324 34-165 (287)
165 KOG0316 Conserved WD40 repeat- 96.4 0.25 5.5E-06 47.4 16.8 196 93-313 91-294 (307)
166 KOG0319 WD40-repeat-containing 96.4 0.094 2E-06 56.5 15.0 193 108-317 109-310 (775)
167 KOG1274 WD40 repeat protein [G 96.4 0.3 6.4E-06 53.9 18.8 206 98-320 9-229 (933)
168 PRK14131 N-acetylneuraminic ac 96.3 0.39 8.4E-06 47.8 18.6 114 109-223 79-253 (376)
169 KOG0285 Pleiotropic regulator 96.3 0.19 4.2E-06 50.6 15.9 209 103-319 150-388 (460)
170 KOG3881 Uncharacterized conser 96.2 0.088 1.9E-06 53.1 13.2 151 118-272 163-328 (412)
171 PHA02790 Kelch-like protein; P 96.2 0.1 2.2E-06 53.9 14.2 108 109-221 357-473 (480)
172 KOG0274 Cdc4 and related F-box 96.2 0.46 9.9E-06 50.3 19.1 142 126-273 226-368 (537)
173 PF07995 GSDH: Glucose / Sorbo 96.2 0.28 6.1E-06 48.2 16.5 56 108-167 5-71 (331)
174 KOG0288 WD40 repeat protein Ti 96.2 0.16 3.4E-06 51.8 14.5 139 160-310 312-452 (459)
175 KOG1520 Predicted alkaloid syn 96.1 0.42 9.1E-06 48.4 17.4 205 97-319 109-375 (376)
176 KOG0272 U4/U6 small nuclear ri 96.1 0.094 2E-06 53.4 12.8 181 108-307 265-448 (459)
177 PRK01029 tolB translocation pr 96.1 0.26 5.7E-06 50.2 16.4 114 109-223 285-408 (428)
178 KOG0296 Angio-associated migra 96.1 1.3 2.8E-05 44.7 20.5 163 100-273 62-229 (399)
179 KOG3881 Uncharacterized conser 96.1 0.041 8.8E-07 55.5 10.1 123 105-230 203-332 (412)
180 KOG0275 Conserved WD40 repeat- 96.1 0.087 1.9E-06 52.4 12.2 125 103-230 347-479 (508)
181 KOG0282 mRNA splicing factor [ 96.1 0.012 2.5E-07 60.6 6.4 135 93-230 332-474 (503)
182 KOG0271 Notchless-like WD40 re 96.1 0.1 2.2E-06 52.9 12.8 154 108-270 119-282 (480)
183 PF08662 eIF2A: Eukaryotic tra 96.1 0.27 5.9E-06 44.7 14.8 140 125-274 36-188 (194)
184 KOG0295 WD40 repeat-containing 96.1 0.11 2.4E-06 52.2 12.8 149 95-251 227-392 (406)
185 KOG0273 Beta-transducin family 96.0 0.23 4.9E-06 51.4 15.1 148 108-263 363-522 (524)
186 TIGR03118 PEPCTERM_chp_1 conse 96.0 0.16 3.5E-06 50.2 13.5 126 105-236 138-296 (336)
187 PF13970 DUF4221: Domain of un 95.9 0.29 6.3E-06 47.9 15.3 111 162-274 58-195 (333)
188 COG2133 Glucose/sorbosone dehy 95.9 0.31 6.7E-06 49.8 15.6 198 93-319 165-396 (399)
189 TIGR03032 conserved hypothetic 95.9 0.21 4.5E-06 49.7 13.8 111 90-207 137-259 (335)
190 KOG0293 WD40 repeat-containing 95.9 0.11 2.4E-06 53.0 12.1 154 109-272 274-433 (519)
191 KOG0319 WD40-repeat-containing 95.9 0.23 5E-06 53.6 15.0 204 92-317 223-439 (775)
192 KOG0271 Notchless-like WD40 re 95.9 0.69 1.5E-05 47.1 17.4 83 103-187 156-244 (480)
193 KOG1445 Tumor-specific antigen 95.9 0.16 3.4E-06 54.4 13.4 180 116-320 641-844 (1012)
194 KOG0265 U5 snRNP-specific prot 95.8 0.18 3.9E-06 49.6 13.0 154 103-264 89-246 (338)
195 TIGR03547 muta_rot_YjhT mutatr 95.8 0.61 1.3E-05 45.4 16.9 93 115-208 17-126 (346)
196 KOG0640 mRNA cleavage stimulat 95.7 0.29 6.3E-06 48.6 13.9 196 107-317 115-334 (430)
197 KOG0263 Transcription initiati 95.7 0.73 1.6E-05 49.9 17.8 186 99-310 448-640 (707)
198 COG0823 TolB Periplasmic compo 95.7 0.17 3.7E-06 51.9 12.8 134 128-268 218-362 (425)
199 KOG0284 Polyadenylation factor 95.7 0.089 1.9E-06 53.5 10.4 120 105-227 181-303 (464)
200 PF14269 Arylsulfotran_2: Aryl 95.6 0.3 6.6E-06 47.7 13.9 64 209-272 95-181 (299)
201 PF05935 Arylsulfotrans: Aryls 95.6 0.99 2.2E-05 46.8 18.4 141 126-272 126-309 (477)
202 TIGR03548 mutarot_permut cycli 95.6 1.2 2.7E-05 43.0 18.0 99 109-208 118-231 (323)
203 KOG3545 Olfactomedin and relat 95.6 0.48 1E-05 45.5 14.5 179 115-307 30-235 (249)
204 KOG1445 Tumor-specific antigen 95.5 0.18 3.9E-06 54.0 12.4 154 160-329 142-302 (1012)
205 KOG4283 Transcription-coupled 95.5 1.5 3.3E-05 43.4 17.9 197 100-310 41-267 (397)
206 PF14583 Pectate_lyase22: Olig 95.4 0.43 9.4E-06 48.5 14.4 133 93-229 21-187 (386)
207 KOG0288 WD40 repeat protein Ti 95.3 0.19 4E-06 51.3 11.2 104 122-229 317-428 (459)
208 COG4946 Uncharacterized protei 95.3 1.4 3.1E-05 46.0 17.6 160 115-302 277-456 (668)
209 KOG4378 Nuclear protein COP1 [ 95.3 0.74 1.6E-05 48.2 15.6 207 92-325 70-285 (673)
210 KOG0299 U3 snoRNP-associated p 95.2 1.6 3.5E-05 45.1 17.7 69 109-180 207-276 (479)
211 PF09826 Beta_propel: Beta pro 95.2 4.2 9E-05 43.0 21.5 139 89-230 181-370 (521)
212 KOG0646 WD40 repeat protein [G 95.2 0.39 8.4E-06 49.5 13.3 156 108-273 127-316 (476)
213 KOG1274 WD40 repeat protein [G 95.2 1.6 3.4E-05 48.5 18.5 178 108-308 60-251 (933)
214 KOG1009 Chromatin assembly com 95.2 0.5 1.1E-05 48.1 13.9 199 101-319 122-371 (434)
215 KOG0646 WD40 repeat protein [G 95.2 0.11 2.4E-06 53.4 9.3 107 117-228 190-317 (476)
216 PF13970 DUF4221: Domain of un 95.2 3.1 6.8E-05 40.7 19.3 159 108-273 45-249 (333)
217 KOG2096 WD40 repeat protein [G 95.0 0.32 6.9E-06 48.5 11.5 63 243-319 195-259 (420)
218 KOG2110 Uncharacterized conser 94.9 1 2.2E-05 45.4 15.0 142 116-264 98-248 (391)
219 KOG4378 Nuclear protein COP1 [ 94.9 0.31 6.7E-06 50.9 11.6 120 108-229 168-292 (673)
220 KOG0639 Transducin-like enhanc 94.8 0.24 5.2E-06 51.8 10.6 118 103-225 464-588 (705)
221 KOG1036 Mitotic spindle checkp 94.8 0.75 1.6E-05 45.4 13.5 149 158-331 24-177 (323)
222 KOG2919 Guanine nucleotide-bin 94.8 3.5 7.6E-05 41.4 18.1 218 87-321 32-282 (406)
223 KOG0289 mRNA splicing factor [ 94.8 2 4.3E-05 44.3 16.8 119 153-277 307-432 (506)
224 PRK14131 N-acetylneuraminic ac 94.7 2.4 5.2E-05 42.2 17.4 149 115-267 38-251 (376)
225 KOG2919 Guanine nucleotide-bin 94.5 0.59 1.3E-05 46.7 12.1 173 108-302 162-353 (406)
226 KOG0274 Cdc4 and related F-box 94.5 2 4.4E-05 45.5 17.0 158 101-272 248-409 (537)
227 KOG2321 WD40 repeat protein [G 94.5 0.96 2.1E-05 48.1 14.1 171 92-266 41-260 (703)
228 PF09826 Beta_propel: Beta pro 94.3 8 0.00017 40.9 20.9 166 128-302 186-393 (521)
229 KOG0299 U3 snoRNP-associated p 94.2 5.5 0.00012 41.3 18.6 116 100-219 140-275 (479)
230 COG0823 TolB Periplasmic compo 94.1 1.2 2.5E-05 45.8 14.0 157 110-274 243-411 (425)
231 KOG4328 WD40 protein [Function 94.0 0.92 2E-05 46.9 12.7 177 125-315 300-490 (498)
232 KOG0305 Anaphase promoting com 94.0 3 6.5E-05 43.8 16.6 184 108-313 221-411 (484)
233 KOG0283 WD40 repeat-containing 94.0 0.84 1.8E-05 49.6 12.9 130 93-227 400-541 (712)
234 KOG0284 Polyadenylation factor 93.9 0.69 1.5E-05 47.3 11.4 194 100-319 136-336 (464)
235 KOG0272 U4/U6 small nuclear ri 93.7 1.8 3.8E-05 44.5 14.0 147 101-258 302-454 (459)
236 KOG4547 WD40 repeat-containing 93.7 3.7 8.1E-05 43.4 16.8 141 126-272 13-180 (541)
237 KOG3914 WD repeat protein WDR4 93.7 0.8 1.7E-05 46.4 11.4 161 110-279 68-238 (390)
238 KOG0281 Beta-TrCP (transducin 93.7 0.27 5.9E-06 49.4 8.0 179 109-315 202-383 (499)
239 KOG0263 Transcription initiati 93.6 1.2 2.7E-05 48.2 13.2 149 110-267 499-652 (707)
240 KOG2048 WD40 repeat protein [G 93.5 5.5 0.00012 43.0 17.7 219 91-319 369-602 (691)
241 KOG2096 WD40 repeat protein [G 93.4 3 6.5E-05 41.8 14.7 190 105-315 188-399 (420)
242 KOG2106 Uncharacterized conser 93.4 5.1 0.00011 42.2 16.9 129 101-244 367-500 (626)
243 KOG0283 WD40 repeat-containing 93.4 6.9 0.00015 42.8 18.6 196 110-321 375-577 (712)
244 PF03088 Str_synth: Strictosid 93.3 0.23 4.9E-06 40.5 5.7 48 255-316 36-83 (89)
245 KOG0307 Vesicle coat complex C 93.1 0.21 4.6E-06 55.9 7.0 173 92-274 105-294 (1049)
246 PF14583 Pectate_lyase22: Olig 93.1 2.3 4.9E-05 43.4 13.7 102 161-274 5-120 (386)
247 KOG4532 WD40-like repeat conta 92.9 2.4 5.1E-05 41.6 12.9 119 109-231 163-295 (344)
248 KOG0267 Microtubule severing p 92.9 0.25 5.4E-06 53.4 6.9 169 108-306 74-255 (825)
249 COG5276 Uncharacterized conser 92.9 11 0.00024 37.6 18.9 192 94-311 120-320 (370)
250 KOG0306 WD40-repeat-containing 92.8 3.4 7.4E-05 45.3 15.1 111 103-215 106-218 (888)
251 PF03178 CPSF_A: CPSF A subuni 92.7 9.9 0.00021 36.6 23.4 180 127-325 1-207 (321)
252 KOG0316 Conserved WD40 repeat- 92.7 10 0.00022 36.8 16.5 110 108-220 21-133 (307)
253 KOG0308 Conserved WD40 repeat- 92.6 1.4 3.1E-05 47.3 11.9 124 104-232 117-257 (735)
254 KOG0647 mRNA export protein (c 92.6 12 0.00026 37.3 18.6 127 100-230 23-157 (347)
255 KOG2695 WD40 repeat protein [G 92.6 0.72 1.6E-05 46.4 9.1 148 120-278 228-390 (425)
256 KOG0640 mRNA cleavage stimulat 92.4 1.6 3.4E-05 43.6 11.1 186 108-310 220-416 (430)
257 PF02333 Phytase: Phytase; In 92.3 6.1 0.00013 40.3 15.6 144 161-321 69-238 (381)
258 PF03178 CPSF_A: CPSF A subuni 92.3 6.8 0.00015 37.8 15.6 118 91-216 77-200 (321)
259 KOG1273 WD40 repeat protein [G 92.3 13 0.00029 37.3 17.5 207 95-329 17-235 (405)
260 KOG4649 PQQ (pyrrolo-quinoline 92.1 6.3 0.00014 38.7 14.6 130 160-307 23-153 (354)
261 KOG1214 Nidogen and related ba 92.1 1.5 3.2E-05 48.6 11.3 158 108-272 1071-1234(1289)
262 KOG0303 Actin-binding protein 92.0 1.4 3.1E-05 45.0 10.5 100 118-222 146-253 (472)
263 KOG0308 Conserved WD40 repeat- 91.9 2.8 6.1E-05 45.1 13.0 147 103-255 170-319 (735)
264 COG4880 Secreted protein conta 91.9 17 0.00038 37.9 18.1 45 158-205 110-154 (603)
265 KOG0264 Nucleosome remodeling 91.9 2.5 5.5E-05 43.3 12.2 144 167-324 144-307 (422)
266 KOG0268 Sof1-like rRNA process 91.7 2.1 4.6E-05 43.4 11.2 200 85-313 88-295 (433)
267 PF02333 Phytase: Phytase; In 91.6 17 0.00038 37.1 20.1 146 127-274 126-301 (381)
268 PF00930 DPPIV_N: Dipeptidyl p 91.6 7.9 0.00017 38.1 15.4 162 128-308 158-346 (353)
269 KOG0276 Vesicle coat complex C 91.5 2.7 5.9E-05 45.2 12.4 110 105-230 352-464 (794)
270 smart00135 LY Low-density lipo 91.4 0.38 8.3E-06 31.9 4.1 32 289-320 8-39 (43)
271 PF05787 DUF839: Bacterial pro 91.2 7.8 0.00017 41.0 15.6 38 258-307 482-519 (524)
272 KOG1214 Nidogen and related ba 91.2 5.1 0.00011 44.6 14.3 120 144-271 1020-1152(1289)
273 PF13570 PQQ_3: PQQ-like domai 91.2 0.68 1.5E-05 31.3 5.2 38 182-219 3-40 (40)
274 PRK10115 protease 2; Provision 91.2 26 0.00056 38.2 22.1 108 108-217 130-254 (686)
275 KOG1272 WD40-repeat-containing 91.0 0.33 7.1E-06 50.3 4.9 179 109-310 134-314 (545)
276 KOG0379 Kelch repeat-containin 90.9 4.2 9.2E-05 42.3 13.2 151 115-266 70-251 (482)
277 KOG0305 Anaphase promoting com 90.8 10 0.00023 39.8 15.7 164 126-308 278-450 (484)
278 KOG0772 Uncharacterized conser 90.8 4.6 9.9E-05 42.7 12.9 176 118-310 283-478 (641)
279 KOG0772 Uncharacterized conser 90.7 1.4 3.1E-05 46.3 9.3 114 101-218 361-488 (641)
280 PF04053 Coatomer_WDAD: Coatom 90.6 9.3 0.0002 39.6 15.2 149 151-329 34-184 (443)
281 KOG0379 Kelch repeat-containin 90.5 5.3 0.00011 41.6 13.5 114 116-230 123-261 (482)
282 KOG0273 Beta-transducin family 90.5 25 0.00054 36.9 20.4 174 109-304 281-467 (524)
283 PF14298 DUF4374: Domain of un 90.3 5 0.00011 41.6 12.7 61 167-228 364-434 (435)
284 KOG4547 WD40 repeat-containing 90.2 6.7 0.00015 41.6 13.8 105 117-227 72-181 (541)
285 KOG0639 Transducin-like enhanc 90.0 3.1 6.8E-05 43.8 11.0 159 155-330 425-591 (705)
286 KOG0650 WD40 repeat nucleolar 89.7 8.2 0.00018 41.5 13.9 185 107-317 403-594 (733)
287 PF00780 CNH: CNH domain; Int 89.7 17 0.00037 33.7 17.6 145 117-278 107-269 (275)
288 KOG0918 Selenium-binding prote 89.6 4.1 8.8E-05 41.9 11.3 106 120-230 222-357 (476)
289 PF01731 Arylesterase: Arylest 89.5 0.55 1.2E-05 38.0 4.2 30 290-319 54-83 (86)
290 KOG0285 Pleiotropic regulator 89.5 18 0.00039 36.9 15.5 194 107-314 238-433 (460)
291 KOG0771 Prolactin regulatory e 89.2 2.1 4.5E-05 43.6 8.9 111 108-225 190-318 (398)
292 KOG0918 Selenium-binding prote 89.2 0.52 1.1E-05 48.1 4.6 93 105-208 312-408 (476)
293 KOG0290 Conserved WD40 repeat- 89.1 12 0.00025 37.3 13.6 193 108-320 100-318 (364)
294 KOG1408 WD40 repeat protein [F 88.5 2.9 6.4E-05 45.7 9.8 107 109-217 601-712 (1080)
295 PF03088 Str_synth: Strictosid 88.3 1.3 2.8E-05 36.1 5.6 47 169-215 36-84 (89)
296 KOG0647 mRNA export protein (c 88.2 30 0.00064 34.6 17.8 208 101-325 71-292 (347)
297 KOG0295 WD40 repeat-containing 88.1 33 0.00072 35.0 20.4 181 108-311 197-397 (406)
298 PF13570 PQQ_3: PQQ-like domai 88.1 1.3 2.7E-05 29.9 4.6 39 139-179 2-40 (40)
299 KOG3545 Olfactomedin and relat 87.9 7.4 0.00016 37.5 11.3 134 109-250 72-234 (249)
300 KOG0301 Phospholipase A2-activ 87.8 15 0.00033 40.0 14.5 204 95-321 171-396 (745)
301 PF08553 VID27: VID27 cytoplas 87.6 44 0.00095 37.4 18.4 190 108-320 434-649 (794)
302 PF14339 DUF4394: Domain of un 87.5 28 0.0006 33.4 17.5 160 108-274 30-223 (236)
303 COG3292 Predicted periplasmic 87.4 3.6 7.8E-05 44.0 9.5 70 103-179 163-234 (671)
304 PF01731 Arylesterase: Arylest 87.4 1.8 3.8E-05 35.1 5.8 46 171-218 37-84 (86)
305 KOG1963 WD40 repeat protein [G 87.4 14 0.0003 40.9 14.2 117 108-230 255-387 (792)
306 KOG1009 Chromatin assembly com 87.3 18 0.00039 37.2 14.1 50 240-302 128-178 (434)
307 KOG0292 Vesicle coat complex C 86.8 7.6 0.00016 43.6 11.8 120 95-221 43-168 (1202)
308 KOG2111 Uncharacterized conser 86.7 21 0.00045 35.8 13.8 101 117-218 149-256 (346)
309 KOG1408 WD40 repeat protein [F 86.4 13 0.00027 41.1 13.0 196 102-319 457-714 (1080)
310 KOG0270 WD40 repeat-containing 86.4 45 0.00097 34.7 19.5 177 117-312 257-441 (463)
311 PF04762 IKI3: IKI3 family; I 86.3 66 0.0014 36.6 21.8 173 152-332 78-298 (928)
312 KOG0973 Histone transcription 86.3 29 0.00064 39.2 16.2 157 108-269 73-258 (942)
313 PF06739 SBBP: Beta-propeller 86.1 0.69 1.5E-05 31.6 2.4 25 289-314 12-36 (38)
314 KOG1645 RING-finger-containing 85.7 26 0.00055 36.2 14.2 74 102-178 191-266 (463)
315 KOG0264 Nucleosome remodeling 85.4 32 0.0007 35.5 14.9 217 90-324 112-351 (422)
316 PF01436 NHL: NHL repeat; Int 85.2 2.7 5.8E-05 26.6 4.7 24 152-175 4-28 (28)
317 PF08553 VID27: VID27 cytoplas 84.9 20 0.00043 40.0 14.1 145 111-264 488-647 (794)
318 KOG0645 WD40 repeat protein [G 84.9 42 0.00092 33.1 24.1 178 109-305 19-211 (312)
319 KOG0649 WD40 repeat protein [G 84.6 42 0.00091 32.8 16.0 117 108-230 118-247 (325)
320 COG2319 FOG: WD40 repeat [Gene 84.3 31 0.00067 31.1 21.7 161 105-273 156-323 (466)
321 KOG1538 Uncharacterized conser 84.3 23 0.00049 38.9 13.6 35 108-146 16-51 (1081)
322 PF13806 Rieske_2: Rieske-like 84.0 3.5 7.5E-05 34.2 6.2 66 93-164 37-103 (104)
323 PF00400 WD40: WD domain, G-be 83.8 4.8 0.0001 26.0 5.7 38 94-134 2-39 (39)
324 PF04053 Coatomer_WDAD: Coatom 83.7 34 0.00074 35.5 14.6 82 128-216 89-171 (443)
325 KOG0267 Microtubule severing p 83.2 1.8 3.9E-05 47.1 5.1 94 109-207 159-257 (825)
326 TIGR03606 non_repeat_PQQ dehyd 83.0 6.6 0.00014 40.9 9.1 75 241-321 35-125 (454)
327 COG2133 Glucose/sorbosone dehy 82.9 3.5 7.6E-05 42.3 6.9 20 291-310 240-259 (399)
328 PF14269 Arylsulfotran_2: Aryl 82.9 50 0.0011 32.3 17.2 96 92-187 33-182 (299)
329 COG2319 FOG: WD40 repeat [Gene 82.2 38 0.00082 30.5 23.3 194 105-320 66-271 (466)
330 KOG4227 WD40 repeat protein [G 82.0 32 0.0007 35.6 13.1 109 108-219 60-180 (609)
331 KOG3522 Predicted guanine nucl 81.9 15 0.00033 40.9 11.5 165 100-274 623-792 (925)
332 KOG0771 Prolactin regulatory e 81.7 27 0.00058 35.8 12.5 191 109-319 149-355 (398)
333 KOG4328 WD40 protein [Function 81.5 30 0.00065 36.2 12.8 133 108-244 326-475 (498)
334 KOG4532 WD40-like repeat conta 81.2 60 0.0013 32.2 15.0 151 104-268 67-237 (344)
335 PF01436 NHL: NHL repeat; Int 81.2 4 8.7E-05 25.7 4.3 24 291-315 3-26 (28)
336 KOG0265 U5 snRNP-specific prot 81.1 53 0.0011 32.8 13.8 108 160-272 59-171 (338)
337 PF05787 DUF839: Bacterial pro 80.0 10 0.00022 40.2 9.3 109 192-320 247-399 (524)
338 KOG1517 Guanine nucleotide bin 80.0 17 0.00038 41.6 11.3 111 107-220 1166-1289(1387)
339 PF00058 Ldl_recept_b: Low-den 79.9 13 0.00028 25.6 6.9 41 246-299 1-42 (42)
340 KOG1272 WD40-repeat-containing 79.8 4.2 9.1E-05 42.4 6.2 116 109-228 214-333 (545)
341 KOG2321 WD40 repeat protein [G 79.8 19 0.0004 38.8 10.9 129 117-254 188-334 (703)
342 KOG3621 WD40 repeat-containing 79.3 70 0.0015 35.2 15.2 196 104-325 124-358 (726)
343 KOG2139 WD40 repeat protein [G 79.0 21 0.00046 36.4 10.7 107 197-321 204-312 (445)
344 PLN02258 9-cis-epoxycarotenoid 78.9 91 0.002 33.7 16.2 141 84-230 122-331 (590)
345 COG4993 Gcd Glucose dehydrogen 78.6 33 0.00071 37.4 12.4 150 158-310 213-407 (773)
346 KOG0321 WD40 repeat-containing 78.1 19 0.00041 39.1 10.4 165 99-268 97-305 (720)
347 KOG3914 WD repeat protein WDR4 77.5 5.3 0.00012 40.6 6.0 79 108-188 155-233 (390)
348 KOG4283 Transcription-coupled 77.5 64 0.0014 32.4 13.2 92 127-218 123-219 (397)
349 KOG1275 PAB-dependent poly(A) 77.2 14 0.00031 41.5 9.6 102 127-231 156-267 (1118)
350 PRK13616 lipoprotein LpqB; Pro 76.9 1.1E+02 0.0025 32.9 18.0 109 108-221 353-482 (591)
351 KOG0277 Peroxisomal targeting 76.9 79 0.0017 31.1 14.5 163 92-267 50-224 (311)
352 KOG1275 PAB-dependent poly(A) 76.9 18 0.00039 40.8 10.2 107 162-274 149-264 (1118)
353 KOG1215 Low-density lipoprotei 76.8 1.3E+02 0.0028 33.5 17.8 176 129-323 418-601 (877)
354 KOG1920 IkappaB kinase complex 76.7 1.6E+02 0.0035 34.5 18.5 180 152-340 71-296 (1265)
355 KOG1310 WD40 repeat protein [G 76.2 19 0.00041 38.6 9.7 108 108-218 54-178 (758)
356 PF09910 DUF2139: Uncharacteri 75.0 96 0.0021 31.1 14.8 185 84-272 16-238 (339)
357 PF08309 LVIVD: LVIVD repeat; 74.9 11 0.00023 26.5 5.3 27 193-219 4-30 (42)
358 KOG2139 WD40 repeat protein [G 74.9 86 0.0019 32.2 13.6 149 159-314 207-370 (445)
359 PF14339 DUF4394: Domain of un 73.9 42 0.0009 32.2 10.7 87 212-310 4-94 (236)
360 KOG0313 Microtubule binding pr 73.9 43 0.00094 34.3 11.3 111 103-216 300-416 (423)
361 KOG2315 Predicted translation 73.2 32 0.00069 36.7 10.5 98 108-208 274-374 (566)
362 PF01011 PQQ: PQQ enzyme repea 72.7 9.5 0.00021 25.5 4.5 29 160-189 1-29 (38)
363 KOG2315 Predicted translation 72.6 99 0.0021 33.1 13.9 102 125-230 248-356 (566)
364 COG3292 Predicted periplasmic 72.4 35 0.00076 36.8 10.7 156 108-276 293-458 (671)
365 PF01011 PQQ: PQQ enzyme repea 71.9 14 0.00031 24.6 5.3 30 246-276 1-30 (38)
366 TIGR03054 photo_alph_chp1 puta 70.7 36 0.00077 30.0 8.8 63 127-189 50-124 (135)
367 COG4880 Secreted protein conta 70.6 43 0.00093 35.2 10.5 72 204-279 398-475 (603)
368 KOG3522 Predicted guanine nucl 70.5 7.8 0.00017 43.1 5.6 106 159-274 636-749 (925)
369 smart00564 PQQ beta-propeller 70.5 9.7 0.00021 23.9 4.0 25 200-224 6-30 (33)
370 PF07250 Glyoxal_oxid_N: Glyox 70.1 44 0.00096 32.0 10.1 130 97-228 59-207 (243)
371 KOG1188 WD40 repeat protein [G 69.8 1.3E+02 0.0029 30.5 13.8 158 161-340 41-208 (376)
372 KOG1517 Guanine nucleotide bin 69.2 2.3E+02 0.005 33.1 17.4 193 110-320 1070-1287(1387)
373 TIGR03054 photo_alph_chp1 puta 69.2 14 0.00031 32.4 6.0 74 201-274 41-123 (135)
374 KOG0313 Microtubule binding pr 68.4 93 0.002 32.0 12.2 129 108-256 264-400 (423)
375 KOG0321 WD40 repeat-containing 68.0 30 0.00064 37.6 9.0 101 109-216 223-347 (720)
376 PRK13616 lipoprotein LpqB; Pro 67.8 1.8E+02 0.004 31.3 16.3 31 291-321 498-528 (591)
377 KOG1034 Transcriptional repres 66.3 1.6E+02 0.0034 30.0 16.5 175 91-319 25-210 (385)
378 COG4993 Gcd Glucose dehydrogen 66.2 46 0.001 36.3 10.1 72 200-272 214-298 (773)
379 KOG0290 Conserved WD40 repeat- 66.1 98 0.0021 31.0 11.6 118 97-219 191-319 (364)
380 smart00564 PQQ beta-propeller 65.8 18 0.00039 22.6 4.6 28 158-186 5-32 (33)
381 smart00135 LY Low-density lipo 65.8 17 0.00036 23.6 4.6 30 189-218 9-39 (43)
382 PF00780 CNH: CNH domain; Int 65.4 1.1E+02 0.0025 28.1 17.5 124 94-229 130-266 (275)
383 TIGR01640 F_box_assoc_1 F-box 64.7 1.1E+02 0.0024 27.7 13.7 109 109-219 98-229 (230)
384 COG4246 Uncharacterized protei 64.2 69 0.0015 31.7 10.0 27 151-177 136-162 (340)
385 KOG0302 Ribosome Assembly prot 63.1 53 0.0011 33.8 9.3 119 97-219 244-379 (440)
386 COG1499 NMD3 NMD protein affec 62.8 79 0.0017 32.1 10.6 97 127-223 221-326 (355)
387 KOG2395 Protein involved in va 62.3 1.1E+02 0.0023 33.0 11.7 138 117-264 347-500 (644)
388 PTZ00486 apyrase Superfamily; 59.9 54 0.0012 33.2 8.8 67 238-311 117-185 (352)
389 PF14779 BBS1: Ciliary BBSome 59.8 44 0.00095 32.4 7.9 57 201-261 196-255 (257)
390 KOG0649 WD40 repeat protein [G 59.7 1.8E+02 0.004 28.6 15.7 167 92-274 52-245 (325)
391 KOG4190 Uncharacterized conser 59.1 18 0.00038 38.9 5.4 114 109-226 789-914 (1034)
392 KOG0650 WD40 repeat nucleolar 58.9 58 0.0013 35.4 9.2 105 108-218 525-637 (733)
393 COG4247 Phy 3-phytase (myo-ino 58.3 1.7E+02 0.0037 29.0 11.6 141 161-318 68-232 (364)
394 KOG1064 RAVE (regulator of V-A 57.2 13 0.00028 44.9 4.4 81 100-194 2334-2415(2439)
395 PF04841 Vps16_N: Vps16, N-ter 57.1 2.3E+02 0.0049 28.9 15.8 105 162-274 192-297 (410)
396 KOG4693 Uncharacterized conser 56.8 65 0.0014 32.0 8.5 147 115-266 88-278 (392)
397 PF13964 Kelch_6: Kelch motif 56.6 36 0.00078 23.5 5.2 33 115-147 11-47 (50)
398 COG4263 NosZ Nitrous oxide red 56.5 25 0.00055 37.0 6.0 100 166-277 70-172 (637)
399 KOG0974 WD-repeat protein WDR6 54.7 3.8E+02 0.0083 30.8 16.7 185 108-319 93-287 (967)
400 PRK10115 protease 2; Provision 54.6 3.2E+02 0.007 29.9 25.3 159 109-272 176-353 (686)
401 PF03055 RPE65: Retinal pigmen 53.9 68 0.0015 33.2 8.8 25 127-152 396-420 (486)
402 PF15416 DUF4623: Domain of un 53.8 2.6E+02 0.0057 28.6 12.8 178 87-267 116-322 (442)
403 PRK11486 flagellar biosynthesi 53.4 29 0.00063 30.1 5.0 74 57-134 21-94 (124)
404 PF03055 RPE65: Retinal pigmen 52.5 2.5E+02 0.0054 29.1 12.7 131 115-250 130-305 (486)
405 PF05262 Borrelia_P83: Borreli 52.3 73 0.0016 33.7 8.7 60 169-228 374-438 (489)
406 KOG0301 Phospholipase A2-activ 51.0 3.5E+02 0.0076 30.0 13.5 118 99-228 137-257 (745)
407 KOG0307 Vesicle coat complex C 50.7 27 0.00059 39.8 5.5 78 108-189 210-295 (1049)
408 KOG2394 WD40 protein DMR-N9 [G 49.6 65 0.0014 34.6 7.7 77 191-272 293-370 (636)
409 PF00930 DPPIV_N: Dipeptidyl p 49.6 2.6E+02 0.0057 27.4 14.4 97 108-206 238-345 (353)
410 COG3670 Lignostilbene-alpha,be 49.5 84 0.0018 33.1 8.5 141 124-268 150-356 (490)
411 PF04841 Vps16_N: Vps16, N-ter 48.6 3.1E+02 0.0067 27.9 12.9 67 104-177 217-286 (410)
412 PF05567 Neisseria_PilC: Neiss 48.2 46 0.00099 33.1 6.2 51 169-219 180-240 (335)
413 PF06823 DUF1236: Protein of u 47.0 36 0.00079 26.1 4.2 27 245-273 39-65 (65)
414 KOG2394 WD40 protein DMR-N9 [G 47.0 42 0.00092 35.9 5.9 73 108-185 294-369 (636)
415 COG5167 VID27 Protein involved 46.0 4.3E+02 0.0093 28.8 13.3 147 115-272 478-642 (776)
416 PRK13861 type IV secretion sys 44.6 79 0.0017 31.1 7.1 45 161-205 43-87 (292)
417 KOG2314 Translation initiation 44.6 4.5E+02 0.0098 28.7 17.4 131 93-226 241-389 (698)
418 COG1770 PtrB Protease II [Amin 44.4 4.8E+02 0.01 28.9 18.9 240 86-339 150-421 (682)
419 KOG0276 Vesicle coat complex C 44.4 4.8E+02 0.01 28.9 16.3 150 74-227 65-224 (794)
420 KOG0645 WD40 repeat protein [G 43.8 3.4E+02 0.0074 27.0 20.3 121 92-216 94-223 (312)
421 KOG4693 Uncharacterized conser 43.0 3E+02 0.0066 27.5 10.7 118 151-269 80-229 (392)
422 PF05131 Pep3_Vps18: Pep3/Vps1 42.2 1.4E+02 0.0031 26.2 7.8 61 255-334 51-111 (147)
423 TIGR02781 VirB9 P-type conjuga 41.9 1E+02 0.0022 29.2 7.3 46 160-205 38-83 (243)
424 PF12435 DUF3678: Protein of u 41.7 11 0.00024 26.2 0.5 11 33-43 16-26 (38)
425 KOG4227 WD40 repeat protein [G 41.0 2E+02 0.0044 30.0 9.5 80 97-181 100-182 (609)
426 KOG0269 WD40 repeat-containing 40.7 4.5E+02 0.0098 29.6 12.6 199 101-320 132-340 (839)
427 KOG1538 Uncharacterized conser 40.5 76 0.0016 35.1 6.7 63 192-261 16-79 (1081)
428 KOG0882 Cyclophilin-related pe 40.4 2E+02 0.0043 30.5 9.4 220 92-323 42-305 (558)
429 KOG0641 WD40 repeat protein [G 40.3 3.6E+02 0.0078 26.3 21.5 210 91-318 21-261 (350)
430 PF08309 LVIVD: LVIVD repeat; 40.1 1.2E+02 0.0025 21.2 5.5 27 152-179 4-30 (42)
431 KOG0292 Vesicle coat complex C 39.8 6.6E+02 0.014 29.1 19.6 198 93-323 195-399 (1202)
432 PF07250 Glyoxal_oxid_N: Glyox 39.7 2.1E+02 0.0045 27.5 9.0 136 130-272 48-205 (243)
433 PF15416 DUF4623: Domain of un 39.6 2.5E+02 0.0054 28.8 9.7 114 155-269 139-276 (442)
434 KOG1920 IkappaB kinase complex 39.6 7.1E+02 0.015 29.5 18.0 90 93-187 57-147 (1265)
435 KOG2103 Uncharacterized conser 39.0 1.4E+02 0.003 33.6 8.5 107 159-272 47-193 (910)
436 KOG4497 Uncharacterized conser 36.9 1E+02 0.0022 31.5 6.5 102 194-315 14-117 (447)
437 PF03646 FlaG: FlaG protein; 36.8 32 0.00069 28.2 2.7 18 258-275 70-87 (107)
438 PRK04313 30S ribosomal protein 36.7 1.6E+02 0.0035 28.3 7.6 59 211-274 106-172 (237)
439 KOG0641 WD40 repeat protein [G 36.3 4.2E+02 0.0091 25.9 20.1 204 97-320 84-303 (350)
440 KOG0322 G-protein beta subunit 35.8 97 0.0021 30.7 6.1 70 104-176 251-321 (323)
441 PLN02258 9-cis-epoxycarotenoid 35.7 1.5E+02 0.0032 32.1 8.1 22 127-149 494-515 (590)
442 smart00612 Kelch Kelch domain. 35.6 86 0.0019 20.3 4.3 39 118-156 2-43 (47)
443 PF15492 Nbas_N: Neuroblastoma 35.5 4.5E+02 0.0097 26.0 11.5 31 196-227 51-81 (282)
444 PF07893 DUF1668: Protein of u 35.3 4.6E+02 0.0099 26.0 15.4 133 128-267 86-255 (342)
445 KOG0277 Peroxisomal targeting 35.1 4.6E+02 0.0099 26.0 17.3 200 109-325 13-226 (311)
446 PRK09511 nirD nitrite reductas 35.1 95 0.0021 25.6 5.3 42 97-142 44-86 (108)
447 COG1471 RPS4A Ribosomal protei 34.6 2.3E+02 0.0051 27.2 8.3 34 241-274 138-174 (241)
448 PF05262 Borrelia_P83: Borreli 34.6 2.9E+02 0.0063 29.3 9.8 103 109-222 364-475 (489)
449 PF10313 DUF2415: Uncharacteri 34.1 1.1E+02 0.0024 21.7 4.6 21 201-221 16-37 (43)
450 KOG1034 Transcriptional repres 33.0 3.1E+02 0.0067 28.0 9.1 122 92-222 76-215 (385)
451 PF13670 PepSY_2: Peptidase pr 32.9 1.1E+02 0.0024 23.7 5.1 32 239-270 46-81 (83)
452 PF11178 DUF2963: Protein of u 32.7 66 0.0014 23.4 3.5 32 211-242 10-41 (51)
453 KOG1215 Low-density lipoprotei 32.7 7.4E+02 0.016 27.7 14.4 156 103-267 478-642 (877)
454 KOG1188 WD40 repeat protein [G 32.6 1.3E+02 0.0029 30.5 6.6 94 128-222 50-155 (376)
455 PF14312 FG-GAP_2: FG-GAP repe 32.1 85 0.0018 22.4 3.9 26 145-170 12-37 (49)
456 PF11879 DUF3399: Domain of un 32.1 38 0.00083 28.5 2.4 32 23-54 70-101 (104)
457 KOG4659 Uncharacterized conser 32.1 1E+03 0.022 29.0 14.5 64 108-176 368-435 (1899)
458 PF01938 TRAM: TRAM domain; I 31.4 90 0.0019 22.7 4.1 35 293-327 20-56 (61)
459 PF05567 Neisseria_PilC: Neiss 31.4 1.4E+02 0.003 29.8 6.6 56 209-266 180-241 (335)
460 smart00320 WD40 WD40 repeats. 30.7 1E+02 0.0022 17.1 4.9 26 107-134 15-40 (40)
461 KOG0302 Ribosome Assembly prot 30.1 5.2E+02 0.011 26.9 10.3 206 101-336 210-438 (440)
462 PRK02290 3-dehydroquinate synt 30.0 4.8E+02 0.01 26.5 10.1 81 189-274 230-316 (344)
463 PF13854 Kelch_5: Kelch motif 29.4 1.6E+02 0.0034 19.8 4.8 15 151-165 6-20 (42)
464 KOG1912 WD40 repeat protein [G 29.2 5.4E+02 0.012 29.3 10.9 144 168-329 33-195 (1062)
465 PF08596 Lgl_C: Lethal giant l 29.1 6.3E+02 0.014 25.8 16.1 175 119-309 99-326 (395)
466 PTZ00118 40S ribosomal protein 29.0 2E+02 0.0044 28.0 7.0 23 252-274 153-175 (262)
467 KOG0793 Protein tyrosine phosp 28.8 44 0.00096 37.0 2.8 24 161-184 818-841 (1004)
468 PF01344 Kelch_1: Kelch motif; 28.7 1.3E+02 0.0028 20.1 4.3 37 109-146 6-46 (47)
469 KOG1285 Beta, beta-carotene 15 28.3 1.5E+02 0.0032 32.1 6.6 70 126-196 486-568 (582)
470 PF13418 Kelch_4: Galactose ox 27.9 1.3E+02 0.0028 20.5 4.2 35 109-143 6-44 (49)
471 COG4247 Phy 3-phytase (myo-ino 27.6 6.3E+02 0.014 25.2 17.6 106 114-223 65-194 (364)
472 KOG1428 Inhibitor of type V ad 27.4 3E+02 0.0065 33.8 8.8 35 241-275 369-403 (3738)
473 COG3211 PhoX Predicted phospha 27.3 1.4E+02 0.003 32.4 6.1 39 257-307 533-571 (616)
474 KOG1645 RING-finger-containing 27.2 2.2E+02 0.0049 29.6 7.3 60 159-219 205-267 (463)
475 PF11768 DUF3312: Protein of u 27.1 8.2E+02 0.018 26.4 13.5 127 92-222 195-333 (545)
476 KOG3630 Nuclear pore complex, 27.1 1.7E+02 0.0036 34.4 6.8 130 178-319 93-227 (1405)
477 PLN00036 40S ribosomal protein 27.0 2.2E+02 0.0047 27.8 6.9 23 252-274 153-175 (261)
478 PF14298 DUF4374: Domain of un 26.8 4.2E+02 0.0091 27.8 9.3 62 126-187 365-433 (435)
479 PF08954 DUF1900: Domain of un 26.8 75 0.0016 27.8 3.4 25 297-321 18-42 (136)
480 PF03646 FlaG: FlaG protein; 26.8 61 0.0013 26.5 2.7 21 126-146 66-86 (107)
481 PF10395 Utp8: Utp8 family; I 26.0 4.1E+02 0.0088 29.4 9.4 59 155-216 238-303 (670)
482 PTZ00223 40S ribosomal protein 25.8 2.6E+02 0.0057 27.4 7.2 23 252-274 150-172 (273)
483 COG4222 Uncharacterized protei 25.3 85 0.0018 32.3 4.0 104 92-223 115-250 (391)
484 KOG0974 WD-repeat protein WDR6 24.9 4.1E+02 0.0089 30.6 9.3 114 100-222 173-292 (967)
485 PF07569 Hira: TUP1-like enhan 24.2 3.4E+02 0.0073 25.2 7.5 25 197-221 19-43 (219)
486 PF13415 Kelch_3: Galactose ox 24.2 2.4E+02 0.0053 19.3 5.1 41 116-156 2-47 (49)
487 KOG4497 Uncharacterized conser 24.2 5.5E+02 0.012 26.4 9.2 102 111-216 98-208 (447)
488 KOG4190 Uncharacterized conser 24.0 93 0.002 33.7 4.0 154 115-272 746-914 (1034)
489 PF00058 Ldl_recept_b: Low-den 23.7 2.4E+02 0.0053 19.1 5.6 38 160-197 1-41 (42)
490 PF14779 BBS1: Ciliary BBSome 23.7 2.5E+02 0.0055 27.2 6.7 53 161-215 197-255 (257)
491 KOG1332 Vesicle coat complex C 23.6 1.7E+02 0.0037 28.7 5.4 93 119-215 178-283 (299)
492 KOG1963 WD40 repeat protein [G 23.6 8.1E+02 0.018 27.7 11.1 159 155-319 24-190 (792)
493 PLN02772 guanylate kinase 22.4 3.6E+02 0.0079 27.8 7.9 68 152-220 27-110 (398)
494 KOG2395 Protein involved in va 21.6 1.1E+03 0.023 25.8 16.1 136 160-311 346-493 (644)
495 KOG0300 WD40 repeat-containing 21.5 8.8E+02 0.019 24.8 10.4 99 129-230 295-399 (481)
496 COG3211 PhoX Predicted phospha 21.5 1.4E+02 0.003 32.4 4.7 59 108-166 503-572 (616)
497 PF04478 Mid2: Mid2 like cell 21.5 1.7E+02 0.0036 26.5 4.6 24 26-49 29-52 (154)
498 COG2834 LolA Outer membrane li 21.4 3.2E+02 0.0069 25.1 6.7 58 85-146 36-106 (211)
499 PF03736 EPTP: EPTP domain; I 21.3 1.7E+02 0.0037 20.1 3.7 39 94-134 4-43 (44)
500 COG3670 Lignostilbene-alpha,be 21.3 2.2E+02 0.0049 30.1 6.1 65 128-193 399-480 (490)
No 1
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=100.00 E-value=5e-74 Score=542.61 Aligned_cols=236 Identities=54% Similarity=0.942 Sum_probs=200.4
Q ss_pred CCCCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEE
Q 019091 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQ 164 (346)
Q Consensus 85 ~~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ 164 (346)
...+++++++|+++||||+.+|||||+|.+||+||||||+||+|+|+++|++||++++++++++++||||+++.+++|||
T Consensus 25 ~~~~~~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~q 104 (264)
T PF05096_consen 25 AAPAPVYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQ 104 (264)
T ss_dssp -----EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEE
T ss_pred cCCCceeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEE
Confidence 35667899999999999999999999997789999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019091 165 VTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 165 ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
+||+++++|+||++|++++++|+++ .||||||+||+.|||||||++|+++||+||+++++|+|.++|+|+.+||||||+
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE-S-SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred EEecCCeEEEEccccceEEEEEecC-CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 9999999999999999999999998 699999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhc--cCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAA--GYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~--~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
||+||||+|++|.|++|||+||+|+++||+++|.+..... ..+..+|||||||||++++||||||+||+||||+|.+
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~e 262 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLVE 262 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEEe
Confidence 9999999999999999999999999999999888653211 1245799999999999999999999999999999975
No 2
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-67 Score=481.01 Aligned_cols=232 Identities=42% Similarity=0.745 Sum_probs=218.8
Q ss_pred CceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEE
Q 019091 88 PSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 88 ~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~lt 166 (346)
.+...++|+++||||..+|||||++. ||++|||||+||.|.|+++|+.+|+++...+++ ++.||||++..++.+||+|
T Consensus 29 t~~l~~evi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT 107 (262)
T COG3823 29 TKVLVYEVIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT 107 (262)
T ss_pred ccCcceEEEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE
Confidence 33445799999999999999999998 579999999999999999999999999999998 6999999999999999999
Q ss_pred eeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC
Q 019091 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G 246 (346)
|+++..|+||++|++.+++++++ +|||||+.|++.|+||||+++|++.||+||+..++|.|..+|.|+.+||||||++|
T Consensus 108 w~egvaf~~d~~t~~~lg~~~y~-GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG 186 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFSYE-GEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDG 186 (262)
T ss_pred eccceeEEEChHHhhhhcccccC-CcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeecc
Confidence 99999999999999999999998 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019091 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
+||||+|+++.|++|||+||+|++||++++|.+.+... ....+|||||||+|+++|||+|||+||.||||+|.+.
T Consensus 187 ~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~-~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~~a 261 (262)
T COG3823 187 ELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLD-KSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLDEA 261 (262)
T ss_pred EEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCcc-ccccccccceeecCcCCeEEEecCcCceeEEEEecCC
Confidence 99999999999999999999999999999987664322 1346799999999999999999999999999999875
No 3
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.83 E-value=3.9e-18 Score=168.67 Aligned_cols=210 Identities=11% Similarity=0.054 Sum_probs=159.6
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCC-------CCCCeEEEEECCCCcEEEEeccCCCee--------EEEE
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGL-------YGRSSVRRVALETGKVEAINQMEGSYF--------GEGL 155 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGl-------yg~s~V~~iDl~Tgkv~~~~~l~~~~F--------geGi 155 (346)
+.+++.++|.+..| +|+ +++|| .||+++.- .+.+.|.+||++|+++++++++|+.|. .-++
T Consensus 36 ~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l 112 (352)
T TIGR02658 36 AGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL 112 (352)
T ss_pred CCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence 68999999998888 786 99988 69999771 145799999999999999999987755 5567
Q ss_pred EEeCCEEEEEEee-CCEEEEEECCCCcEEEEEecCC-CceeE--------------------------------E-----
Q 019091 156 TLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFTHQM-KDGWG--------------------------------L----- 196 (346)
Q Consensus 156 t~~g~~LY~ltw~-~~~v~V~D~~tl~~i~ti~~~~-peGwG--------------------------------L----- 196 (346)
+.+|+.||+.++. ++.|.|+|..+++++++++++. +..+. +
T Consensus 113 s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~ 192 (352)
T TIGR02658 113 TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED 192 (352)
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc
Confidence 7789999999999 9999999999999999998641 11111 1
Q ss_pred ---------ee-CCCEEEEECCCCeEEEEe-----CCCCcEEEEEEeccC--C-eeee-eceeeEeeCCEEEE-EecC--
Q 019091 197 ---------AT-DGKVLFGSDGSSMLYQID-----PQTLKVIRKDIVRYK--G-REVR-NLNELEFIKGEVWA-NVWQ-- 254 (346)
Q Consensus 197 ---------t~-Dg~~LyvSdGs~~l~vID-----p~T~kvi~~I~V~~~--G-~pv~-~lNELE~~~G~Lya-Nv~~-- 254 (346)
++ ||+++|+|.. ++|++|| +.+.+....+..... | +|-+ ++-.+...++++|| +...
T Consensus 193 ~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 193 EYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred cccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 12 6778888887 8999999 555555555544321 1 1211 11012233579999 5332
Q ss_pred ------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC-EEEEecCCCCcEEEEEE
Q 019091 255 ------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTGKLWPKLYEINL 319 (346)
Q Consensus 255 ------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTGK~Wp~l~ev~l 319 (346)
.+.|.+||++|++++++|.+. .-+.|||++||++ +||+|+...+.|.-|..
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~vG--------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIELG--------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeCC--------------CceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 379999999999999999772 1468999999999 99999999999998876
No 4
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.74 E-value=4.7e-16 Score=153.89 Aligned_cols=194 Identities=13% Similarity=0.052 Sum_probs=143.2
Q ss_pred CEEEEEcCCC--CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe---------eCCEEEEEECCCCcEEE
Q 019091 116 DTLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 116 ~~LyeStGly--g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw---------~~~~v~V~D~~tl~~i~ 184 (346)
.++|++.... ..++|++||.++++++..++.+..+-+. ++.++++||+++- .++.|.|||++|++.++
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 4688887632 1279999999999999999999888775 8889999999988 89999999999999999
Q ss_pred EEecC-CCc--------eeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccC-----------------Ceeee
Q 019091 185 EFTHQ-MKD--------GWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYK-----------------GREVR 236 (346)
Q Consensus 185 ti~~~-~pe--------GwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~-----------------G~pv~ 236 (346)
+++.+ .|+ ..+|++||++|||+| . ++.|.+||.++.+++++|.|.+. |.-..
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAK 171 (352)
T ss_pred EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEE
Confidence 99975 334 889999999999999 4 89999999999999999999651 11111
Q ss_pred ----------ecee-e--------------Ee-eCCEEEEEecCCCeEEEEe-----CCCCeEEEEEECCchhhhhhhcc
Q 019091 237 ----------NLNE-L--------------EF-IKGEVWANVWQTDCIARIS-----HEDGVVLGWVLLPNLRERLVAAG 285 (346)
Q Consensus 237 ----------~lNE-L--------------E~-~~G~LyaNv~~sn~I~vID-----~~TG~Vv~~I~l~~l~~~~~~~~ 285 (346)
.-|. + .. .+.++|++.. +.|++|| ++.++++..+...... .+
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~-----~~ 244 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKA-----DG 244 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccc-----cc
Confidence 1111 1 01 1336888876 9999999 4555555554332111 11
Q ss_pred C-CCCceeeEEEEeCCCCEEEE-ecCCC--------CcEEEEEE
Q 019091 286 Y-NGIDVLNGIAWDSNRNRIFV-TGKLW--------PKLYEINL 319 (346)
Q Consensus 286 ~-~~~~vlNGIA~d~~~~~LfV-TGK~W--------p~l~ev~l 319 (346)
. |.+ +.+||++++++++|| ..+.- +.+..|..
T Consensus 245 wrP~g--~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 245 WRPGG--WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cCCCc--ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 1 222 122999999999999 44333 57777776
No 5
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=5.5e-15 Score=141.88 Aligned_cols=212 Identities=7% Similarity=0.060 Sum_probs=149.8
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECC-CCcE--EEEeccCCCeeEEEEEEeCCEEEEEEe
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALE-TGKV--EAINQMEGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~-Tgkv--~~~~~l~~~~FgeGit~~g~~LY~ltw 167 (346)
++++++++++...+ ++|++++|+ .||+++. ....|..|+.+ +|++ +..++.+..+-+..+..+++.||++++
T Consensus 24 ~l~~~~~~~~~~~~--~~l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~ 99 (330)
T PRK11028 24 ALTLLQVVDVPGQV--QPMVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY 99 (330)
T ss_pred ceeeeeEEecCCCC--ccEEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc
Confidence 56788888876555 699999988 5899876 56799999886 5654 455566656655555556889999999
Q ss_pred eCCEEEEEECCC-C---cEEEEEec-CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEE-------EEEeccCCee
Q 019091 168 LQKTGFIYDQNN-L---NKLEEFTH-QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIR-------KDIVRYKGRE 234 (346)
Q Consensus 168 ~~~~v~V~D~~t-l---~~i~ti~~-~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~-------~I~V~~~G~p 234 (346)
.++.+.+||.++ . +.+..++. +.|.+..++|||+++|++| +++.|.++|.++...+. ++.++. .|
T Consensus 100 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~--~p 177 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA--GP 177 (330)
T ss_pred CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC--CC
Confidence 999999999863 2 33444443 2468888999999999988 78999999987743221 222332 24
Q ss_pred eeeceeeEee--CCEEEEEecCCCeEEEEeCC--CCeE--EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 235 VRNLNELEFI--KGEVWANVWQTDCIARISHE--DGVV--LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 235 v~~lNELE~~--~G~LyaNv~~sn~I~vID~~--TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
.+ +.+. +.++||.++.+++|.++|.+ +|+. +..+.. + +. ..+....+.+|+++|++++|||++
T Consensus 178 ~~----~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~-p~----~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 178 RH----MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--M-PA----DFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred ce----EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--C-CC----cCCCCccceeEEECCCCCEEEEec
Confidence 32 4444 34899999999999999886 4543 444432 1 10 011122456899999999999999
Q ss_pred CCCCcEEEEEEe
Q 019091 309 KLWPKLYEINLR 320 (346)
Q Consensus 309 K~Wp~l~ev~l~ 320 (346)
...+.|..+++.
T Consensus 247 ~~~~~I~v~~i~ 258 (330)
T PRK11028 247 RTASLISVFSVS 258 (330)
T ss_pred CCCCeEEEEEEe
Confidence 989988887764
No 6
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=4.4e-15 Score=147.72 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=164.9
Q ss_pred CcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe--eCCEEEEEECCCCc
Q 019091 105 AFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--LQKTGFIYDQNNLN 181 (346)
Q Consensus 105 ~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw--~~~~v~V~D~~tl~ 181 (346)
...+|+++.+++ ++|+.+. +.+.|.++|.++.++...+.++..+.+..++.+++.+|+++- .++.+.++|.++.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTG--DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecC--CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 556899998877 5999998 567999999999999999999988878777888999999998 68999999999999
Q ss_pred EEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEE-E----EEeccCCeeeeeceeeEeeCCEEEEEecC
Q 019091 182 KLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIR-K----DIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (346)
Q Consensus 182 ~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~-~----I~V~~~G~pv~~lNELE~~~G~LyaNv~~ 254 (346)
++++++++ .|.|.+++++|+.+|++| +++.|++||+++.++.+ + +.++. .|.. ..+..++.++||.+..
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~--~P~~--i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT--GPAG--IAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC--CCce--EEECCCCCEEEEEecc
Confidence 99999987 688999999999999999 79999999999988874 2 44433 3332 1233445689999988
Q ss_pred C--CeEEEEeCCCCeEEEE-EECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 255 T--DCIARISHEDGVVLGW-VLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 255 s--n~I~vID~~TG~Vv~~-I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+ +.+.+||.+++.+.++ +.. ..+ .+-|++.+|+++.+||+...-+.++.|...
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~------------~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPV------------GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CCCceEEEEeCCCceEEEecccc------------ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 7 6999999999999888 322 112 467899999999999999999999998864
No 7
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=7.3e-15 Score=141.01 Aligned_cols=210 Identities=9% Similarity=0.042 Sum_probs=145.2
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCC-CcE---EEEeccCCCeeEEEEEEeCCEEEEEE
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALET-GKV---EAINQMEGSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~T-gkv---~~~~~l~~~~FgeGit~~g~~LY~lt 166 (346)
+++.+++++....+ .+++++++++ ||+++- +++.|.+||+++ |.+ +....-...+.+..++++++.+|+++
T Consensus 69 ~l~~~~~~~~~~~p--~~i~~~~~g~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 69 ALTFAAESPLPGSP--THISTDHQGRFLFSASY--NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ceEEeeeecCCCCc--eEEEECCCCCEEEEEEc--CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee
Confidence 35677777775555 6999999885 777753 678999999974 432 22222223444555556678999999
Q ss_pred eeCCEEEEEECCCCcEEE-------EEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCC--C--CcEEEEEEeccCC-
Q 019091 167 WLQKTGFIYDQNNLNKLE-------EFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--T--LKVIRKDIVRYKG- 232 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~-------ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T--~kvi~~I~V~~~G- 232 (346)
+.++.|.|||.++...+. +++.+ .|.+..+++||++||++| ++++|.++|.+ + ++.+.++.....+
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 999999999997743331 23333 578889999999999998 49999999865 3 3444444332110
Q ss_pred -eeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCC----eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019091 233 -REVRNLNELEFI--KGEVWANVWQTDCIARISHEDG----VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 233 -~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG----~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
.+ ....++.+. +.++||.+...+.|.++|.++. ++++.++. +..|.+++++|++++||
T Consensus 225 ~~~-~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--------------~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 225 SDT-RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--------------ETQPRGFNIDHSGKYLI 289 (330)
T ss_pred CCC-ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--------------cccCCceEECCCCCEEE
Confidence 11 122234433 4579999998999999987442 35555543 12467899999999999
Q ss_pred EecCCCCcEEEEEEe
Q 019091 306 VTGKLWPKLYEINLR 320 (346)
Q Consensus 306 VTGK~Wp~l~ev~l~ 320 (346)
|++...++|...++.
T Consensus 290 va~~~~~~v~v~~~~ 304 (330)
T PRK11028 290 AAGQKSHHISVYEID 304 (330)
T ss_pred EEEccCCcEEEEEEc
Confidence 999888877777664
No 8
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=4.2e-14 Score=129.41 Aligned_cols=211 Identities=17% Similarity=0.209 Sum_probs=155.7
Q ss_pred eEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019091 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
-+.+.+++....+ .++.+++|+. +|++.+ +++.|.+||+.+++.+..++.+..+....+..+++.+|++...++.
T Consensus 21 ~~~~~~~~~~~~~--~~l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 96 (300)
T TIGR03866 21 LEVTRTFPVGQRP--RGITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNL 96 (300)
T ss_pred CceEEEEECCCCC--CceEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCe
Confidence 3456666654445 5899999884 778766 5679999999999988877655544333344456789999888899
Q ss_pred EEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-C-CE
Q 019091 172 GFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K-GE 247 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~-G~ 247 (346)
+.++|..+.+.+.+++.+ .+.+..+++||+.++++.. .+.++++|+++++.+..+.++. .+ +.+.+. + .+
T Consensus 97 l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~----~~~~~s~dg~~ 170 (300)
T TIGR03866 97 VTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ--RP----RFAEFTADGKE 170 (300)
T ss_pred EEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC--Cc----cEEEECCCCCE
Confidence 999999999999999864 4678889999999988764 5678889999999888776643 23 224443 3 46
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+|++....+.|.++|.++++++..++... ... .+....+.+|+|+|+++.+|++...-+++..+.+
T Consensus 171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~-----~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 171 LWVSSEIGGTVSVIDVATRKVIKKITFEI-PGV-----HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred EEEEcCCCCEEEEEEcCcceeeeeeeecc-ccc-----ccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 88887778899999999999999886521 100 0122356789999999999998654456665554
No 9
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=3e-15 Score=148.81 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=145.1
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
+.++++++|....+ -.++.+++||+ +|+++. ++.|.+||+.+++++++++.+..+.+..++.+|+.+|++++.++
T Consensus 25 t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 25 TNKVVARIPTGGAP-HAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp T-SEEEEEE-STTE-EEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETT
T ss_pred CCeEEEEEcCCCCc-eeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCC
Confidence 67899999985444 35788999885 899853 35999999999999999999999888777889999999999999
Q ss_pred EEEEEECCCCcEEEEEecC-----------------------------------------------------CCceeEEe
Q 019091 171 TGFIYDQNNLNKLEEFTHQ-----------------------------------------------------MKDGWGLA 197 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~-----------------------------------------------------~peGwGLt 197 (346)
.+.|+|++|++++++++.+ .+++-+++
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d 180 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD 180 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC
Confidence 9999999999998876532 12222334
Q ss_pred eCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE---------EecCCCeEEEEeCCCCe
Q 019091 198 TDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA---------NVWQTDCIARISHEDGV 267 (346)
Q Consensus 198 ~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya---------Nv~~sn~I~vID~~TG~ 267 (346)
+||+++++ ++++|.|.++|+++++++..+.++...+|..-.|--.+.-|-+|+ ....++.+.++|..+.+
T Consensus 181 pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 181 PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence 44678888 468999999999999999999997654443333322122234443 33456677788999999
Q ss_pred EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe---cCCCCcEEEEEEee
Q 019091 268 VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT---GKLWPKLYEINLRE 321 (346)
Q Consensus 268 Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT---GK~Wp~l~ev~l~~ 321 (346)
++.+|++.+ .+-.|+.+|+++.+||. |..+++|.-|....
T Consensus 261 vv~~I~~~G--------------~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 261 VVKTIPTQG--------------GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EEEEEE-SS--------------SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred EEEEEECCC--------------CcceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 999998732 12568999999999999 88899999998754
No 10
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.67 E-value=7.2e-14 Score=127.88 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=159.0
Q ss_pred EEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEE
Q 019091 94 QVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v 172 (346)
+++.+++....+ ..+.+++++ .+|++++ ++..|.+||+.+++.+..++.+..+.+..++++++.++......+.+
T Consensus 64 ~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 139 (300)
T TIGR03866 64 EVIGTLPSGPDP--ELFALHPNGKILYIANE--DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMA 139 (300)
T ss_pred cEEEeccCCCCc--cEEEECCCCCEEEEEcC--CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeE
Confidence 455566554444 578898887 4888876 45699999999998888777655444444445566777666666678
Q ss_pred EEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCe---eeeeceeeEee--C
Q 019091 173 FIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGR---EVRNLNELEFI--K 245 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~---pv~~lNELE~~--~ 245 (346)
.++|.++++.+..+..+ .+.+..+++||++||++. .++.|+++|.++++.++++.....+. .+ ..-.+.+. +
T Consensus 140 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~s~dg 218 (300)
T TIGR03866 140 HFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAV-QPVGIKLTKDG 218 (300)
T ss_pred EEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccC-CccceEECCCC
Confidence 88999999888877654 466777899999998865 57899999999999988876432111 11 11123333 3
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec--c
Q 019091 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM--K 323 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~--~ 323 (346)
.++|++....+.|.++|.++++++..+... ..+.+++|+|++++||+++..-++|..+++... .
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTYEVLDYLLVG--------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEEEEEeC--------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 468988877889999999999998776431 135789999999999999888888888877532 2
Q ss_pred ccccCCCchhHH
Q 019091 324 RERKDGFNVDTI 335 (346)
Q Consensus 324 ~~~~~~~~~~~~ 335 (346)
+..+-|+..|.+
T Consensus 285 ~~~~~~~~~~~~ 296 (300)
T TIGR03866 285 KSIKVGRLPWGV 296 (300)
T ss_pred EEEEccccccee
Confidence 344455555544
No 11
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=4.4e-14 Score=140.53 Aligned_cols=186 Identities=16% Similarity=0.094 Sum_probs=132.2
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE-EEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCcee
Q 019091 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG-EGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGW 194 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg-eGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGw 194 (346)
.+|+..- ++++|.++|.+|.+++++++.+..+.+ .-++.+++.+|+++ +++.+.+||+.+++++++++++ .+.|.
T Consensus 7 l~~V~~~--~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVER--GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp EEEEEEG--GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred EEEEEec--CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCcccEEEEEecCCCcceE
Confidence 4556654 677999999999999999998766522 22345788999997 5799999999999999999997 67888
Q ss_pred EEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCe--eeeeceee-EeeCC-EEEEEecCCCeEEEEeCCCCe--
Q 019091 195 GLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGR--EVRNLNEL-EFIKG-EVWANVWQTDCIARISHEDGV-- 267 (346)
Q Consensus 195 GLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~--pv~~lNEL-E~~~G-~LyaNv~~sn~I~vID~~TG~-- 267 (346)
++++||+++|++| ..+++.++|++|++++++|+++.... +-.+...+ +...+ +..+|+..++.|.++|..+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 8999999999999 59999999999999999999964210 11111222 22233 455788989999999988765
Q ss_pred EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 268 VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 268 Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+..++. +..|++..+||+++.++++...-++|--+++
T Consensus 164 ~~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 164 KVTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp EEEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred ceeeecc--------------cccccccccCcccceeeecccccceeEEEee
Confidence 3345543 2368999999999999998777777776664
No 12
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3.7e-13 Score=134.01 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=166.9
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeC
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~ 169 (346)
+.++..+++....+ .|+.+.+++ .+|+... +.+.+..++....++......+ ..+-+..+...+.++|+.+...
T Consensus 20 ~~~~~~~~~~~~~~--~~v~~~~~g~~~~v~~~--~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~ 95 (381)
T COG3391 20 TNKVTAAISLGRGP--GGVAVNPDGTQVYVANS--GSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS 95 (381)
T ss_pred ccEEEEEeecCCCC--ceeEEcCccCEEEEEee--cCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCC
Confidence 56677777654545 799999888 7998876 3448999998877777766666 3333334444789999999999
Q ss_pred CEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECC---CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC
Q 019091 170 KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdG---s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~ 245 (346)
+.+.|+|.++.+..++++.+ .|.|.++++|++.+||+|. ++++++||++|.++++++.++.. |... .+...+
T Consensus 96 ~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~--P~~~--a~~p~g 171 (381)
T COG3391 96 NTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT--PTGV--AVDPDG 171 (381)
T ss_pred CeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC--cceE--EECCCC
Confidence 99999999999999999987 7999999999999999984 68999999999999999999874 3220 122334
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEE-EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEEee
Q 019091 246 GEVWANVWQTDCIARISHEDGVVLG-WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINLRE 321 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~-~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l~~ 321 (346)
.++|+.+..++.|++||+++..+.. .... ....+..|.|++++++++++||+...- .+++.+....
T Consensus 172 ~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~----------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 172 NKVYVTNSDDNTVSVIDTSGNSVVRGSVGS----------LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred CeEEEEecCCCeEEEEeCCCcceecccccc----------ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 5799999899999999999988874 2211 013355789999999999999999887 5888888753
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=1.1e-12 Score=128.42 Aligned_cols=213 Identities=14% Similarity=0.180 Sum_probs=149.1
Q ss_pred eeEEEEEEec-CCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCC-CcEEEEec--------------cCCCeeEEE
Q 019091 92 TIQVVNEFPH-DPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALET-GKVEAINQ--------------MEGSYFGEG 154 (346)
Q Consensus 92 t~~Vv~t~ph-d~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~T-gkv~~~~~--------------l~~~~FgeG 154 (346)
+++.+++.+. +..| -.+++++++ .||+++ |+.+.|.+++++. |++..... ..+.+....
T Consensus 75 ~L~~~~~~~~~g~~p--~~i~~~~~g~~l~van--y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSP--CHIAVDPDGRFLYVAN--YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp EEEEEEEEEESSSCE--EEEEECTTSSEEEEEE--TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred eeEEeeeeccCCCCc--EEEEEecCCCEEEEEE--ccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE
Confidence 6888999985 3334 689999888 588886 4778999999987 66655431 123333444
Q ss_pred EEEeCCEEEEEEeeCCEEEEEECCCC----cEEEEEec--C-CCceeEEeeCCCEEEEEC-CCCeEEEEeCC--C--CcE
Q 019091 155 LTLLGEKLFQVTWLQKTGFIYDQNNL----NKLEEFTH--Q-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--T--LKV 222 (346)
Q Consensus 155 it~~g~~LY~ltw~~~~v~V~D~~tl----~~i~ti~~--~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T--~kv 222 (346)
++++++.+|+.+...++|++|+.++. +....+.. + .|.+..+++||+++|+.+ .+++|.+++.. + ++.
T Consensus 151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE
Confidence 45567899999999999999998653 33445543 3 577888999999999987 59999999876 3 445
Q ss_pred EEEEEeccCCee-eeeceeeEee-CC-EEEEEecCCCeEEEEeC--CCCeE--EEEEECCchhhhhhhccCCCCceeeEE
Q 019091 223 IRKDIVRYKGRE-VRNLNELEFI-KG-EVWANVWQTDCIARISH--EDGVV--LGWVLLPNLRERLVAAGYNGIDVLNGI 295 (346)
Q Consensus 223 i~~I~V~~~G~p-v~~lNELE~~-~G-~LyaNv~~sn~I~vID~--~TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGI 295 (346)
+.++.....+.. -....++... || +|||++-..|.|++++. ++|++ +..++. .+..|.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-------------~G~~Pr~~ 297 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-------------GGKFPRHF 297 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-------------SSSSEEEE
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-------------CCCCccEE
Confidence 556655322111 1133455554 44 89999999999888886 55654 344432 23468999
Q ss_pred EEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 296 AWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 296 A~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
+++|+++.|||+++..+.|...++.+
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 99999999999999999998887753
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=3e-12 Score=125.24 Aligned_cols=216 Identities=14% Similarity=0.156 Sum_probs=149.2
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCC-CCCeEEEEECCC--Cc--EEEEec-cCCCeeEEEEEEeCCEEEE
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLY-GRSSVRRVALET--GK--VEAINQ-MEGSYFGEGLTLLGEKLFQ 164 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGly-g~s~V~~iDl~T--gk--v~~~~~-l~~~~FgeGit~~g~~LY~ 164 (346)
+++.+..++....| .-|++++++ .||.++... +...|..|+... |+ .+.+.. .+..+-...++.+++.||+
T Consensus 26 ~l~~~~~~~~~~~P--s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 26 TLTLVQTVAEGENP--SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp EEEEEEEEEESSSE--CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEE
T ss_pred CceEeeeecCCCCC--ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEE
Confidence 56667777666666 689999877 699887643 567888877654 54 445555 4555544444447899999
Q ss_pred EEeeCCEEEEEECCC-CcEEEE---Eec------------CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCc--E--E
Q 019091 165 VTWLQKTGFIYDQNN-LNKLEE---FTH------------QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLK--V--I 223 (346)
Q Consensus 165 ltw~~~~v~V~D~~t-l~~i~t---i~~------------~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~k--v--i 223 (346)
+++.++.+.+|+.++ +++... +.+ ..+....++|||++||++| |.+.|++++..+.+ + .
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~ 183 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPV 183 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEe
Confidence 999999999999876 444333 211 1244667899999999999 89999998865533 4 4
Q ss_pred EEEEeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCC--CCeE--EEEEECCchhhhhhhccCCCCceeeEEEE
Q 019091 224 RKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHE--DGVV--LGWVLLPNLRERLVAAGYNGIDVLNGIAW 297 (346)
Q Consensus 224 ~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~--TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~ 297 (346)
..+.+.....|.+ |.+. +.++|+.+..++.|.+++.. +|+. +.++.. +.. +......+.+|++
T Consensus 184 ~~~~~~~G~GPRh----~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~--~~~-----~~~~~~~~~~i~i 252 (345)
T PF10282_consen 184 DSIKVPPGSGPRH----LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST--LPE-----GFTGENAPAEIAI 252 (345)
T ss_dssp EEEECSTTSSEEE----EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES--CET-----TSCSSSSEEEEEE
T ss_pred eccccccCCCCcE----EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee--ccc-----cccccCCceeEEE
Confidence 4555544445766 5555 34899999999999999888 6653 344433 211 1222347899999
Q ss_pred eCCCCEEEEecCCCCcEEEEEEe
Q 019091 298 DSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 298 d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+|++++|||+++.-+.|.-.++.
T Consensus 253 spdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 253 SPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp -TTSSEEEEEECTTTEEEEEEEC
T ss_pred ecCCCEEEEEeccCCEEEEEEEe
Confidence 99999999999999998777774
No 15
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.55 E-value=1.5e-12 Score=144.70 Aligned_cols=203 Identities=17% Similarity=0.130 Sum_probs=141.5
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc-----------------CCCeeEEEEEEe--CCEEEEEEe
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM-----------------EGSYFGEGLTLL--GEKLFQVTW 167 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-----------------~~~~FgeGit~~--g~~LY~ltw 167 (346)
+|+++++++ .||++.. +...|++||+.++++..-..- -..| .|++++ ++.+|++++
T Consensus 627 ~GIavd~~gn~LYVaDt--~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P--~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADT--ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSP--WDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred cEEEEeCCCCEEEEEeC--CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCC--eEEEEecCCCeEEEEEC
Confidence 799999765 6999976 567999999999876432110 0123 345554 689999999
Q ss_pred eCCEEEEEECCCCcEEEEEe-----------------cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEec
Q 019091 168 LQKTGFIYDQNNLNKLEEFT-----------------HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti~-----------------~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~ 229 (346)
.++.|+++|..+.... ++. ...|.|.++++||++||++| ++++|.++|+++.... +.++
T Consensus 703 ~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~--~~~g 779 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR--LLAG 779 (1057)
T ss_pred CCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE--EEEe
Confidence 9999999999876543 111 11477888999999999999 5899999999987652 2221
Q ss_pred cC--------------Ce----eeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhh-hhccCCCC
Q 019091 230 YK--------------GR----EVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERL-VAAGYNGI 289 (346)
Q Consensus 230 ~~--------------G~----pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~-~~~~~~~~ 289 (346)
.+ |. .+.++..+.+. +|.|||+.+..+.|.+||++++++....-... .+.. +.......
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~-~G~~dG~~~~a~l 858 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK-AGFKDGKALKAQL 858 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC-cCCCCCccccccc
Confidence 10 10 01122335454 68899999999999999999999876553311 0000 00001124
Q ss_pred ceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 290 DVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 290 ~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+.|+|||++++|+ +||+....+.|..+.+
T Consensus 859 ~~P~GIavd~dG~-lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 859 SEPAGLALGENGR-LFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCceEEEEeCCCC-EEEEECCCCEEEEEEC
Confidence 5799999999885 9999988888887766
No 16
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.54 E-value=4.9e-12 Score=117.01 Aligned_cols=177 Identities=16% Similarity=0.271 Sum_probs=127.2
Q ss_pred eeEEEe-cCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc--C--CCeeEEEEEEe-CCEEEEEEeeC--------CEEE
Q 019091 108 QGLLYA-ENDTLFESTGLYGRSSVRRVALETGKVEAINQM--E--GSYFGEGLTLL-GEKLFQVTWLQ--------KTGF 173 (346)
Q Consensus 108 qGL~~~-~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l--~--~~~FgeGit~~-g~~LY~ltw~~--------~~v~ 173 (346)
.|+.+. +++.||++.. ..+.++|+++|++...... + +..+.-.++++ .++||+.+-.. +.++
T Consensus 43 ~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 43 NGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred ceEEEEccCCEEEEEEc----CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence 699999 7899999965 3667779999987666655 2 33445556664 36799987543 6799
Q ss_pred EEECCCCcEEEEEe-cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCC--CCcEEEEEEe---ccC-CeeeeeceeeEee-
Q 019091 174 IYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TLKVIRKDIV---RYK-GREVRNLNELEFI- 244 (346)
Q Consensus 174 V~D~~tl~~i~ti~-~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T~kvi~~I~V---~~~-G~pv~~lNELE~~- 244 (346)
.+|++ .+...-+. ...|.|.++++|++.||++| ..++|+.+|.. +.++..+-.+ ... |.|- -|.++
T Consensus 119 ~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD----G~~vD~ 193 (246)
T PF08450_consen 119 RIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD----GLAVDS 193 (246)
T ss_dssp EEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE----EEEEBT
T ss_pred EECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCC----cceEcC
Confidence 99998 55433332 23689999999999999999 58899999975 3434322222 111 2343 36665
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEE-eCCCCEEEEe
Q 019091 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW-DSNRNRIFVT 307 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~-d~~~~~LfVT 307 (346)
+|.||++.|..+.|.++||+ |+++..|.++ . ..|..+|| -++.++||||
T Consensus 194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~------------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDPD-GKLLREIELP-V------------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TS-EEEEEETTTEEEEEETT-SCEEEEEE-S-S------------SSEEEEEEESTTSSEEEEE
T ss_pred CCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-C------------CCEEEEEEECCCCCEEEEE
Confidence 68999999999999999999 9999999873 1 14677999 4688999998
No 17
>PRK02888 nitrous-oxide reductase; Validated
Probab=99.51 E-value=3.6e-13 Score=140.84 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=145.6
Q ss_pred cCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee------------------------
Q 019091 114 ENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------------------------ 168 (346)
Q Consensus 114 ~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~------------------------ 168 (346)
+||+ +++. .. -.+.+++||.+|.++..++.+++++....++.+|+.+|+....
T Consensus 202 nDGk~l~~~-~e-y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 202 NDGKDLDDP-KK-YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCEeecc-cc-eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 3554 4444 32 4579999999999999999999998888888889999988532
Q ss_pred ---------------CCEEEEEECCC-----CcEEEEEecC-CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCc-----
Q 019091 169 ---------------QKTGFIYDQNN-----LNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLK----- 221 (346)
Q Consensus 169 ---------------~~~v~V~D~~t-----l~~i~ti~~~-~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~k----- 221 (346)
.++|.|+|..+ .+++..|+++ .|.|..++|||+++|++++ |++++|||.++++
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 27899999999 7999999998 7899999999999999996 9999999999988
Q ss_pred -------EEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCC----------CeEEEEEECCchhhhhhh
Q 019091 222 -------VIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHED----------GVVLGWVLLPNLRERLVA 283 (346)
Q Consensus 222 -------vi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~T----------G~Vv~~I~l~~l~~~~~~ 283 (346)
++++++||.. |++ .+|+ +|..|.+.+.++.|++.|.++ ..|+.++|+. -.+..
T Consensus 360 ~~~~~~~vvaevevGlG--PLH----TaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~-y~pgh-- 430 (635)
T PRK02888 360 KIKPRDAVVAEPELGLG--PLH----TAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVH-YQPGH-- 430 (635)
T ss_pred cCCccceEEEeeccCCC--cce----EEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCC-Cccce--
Confidence 5899999773 655 5566 468999999999999999998 6799999883 22221
Q ss_pred ccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019091 284 AGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 284 ~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
.....|=.-+|+|+.|++-+|..-.
T Consensus 431 -----~~~~~g~t~~~dgk~l~~~nk~skd 455 (635)
T PRK02888 431 -----NHASMGETKEADGKWLVSLNKFSKD 455 (635)
T ss_pred -----eeecCCCcCCCCCCEEEEccccccc
Confidence 1122333456788887777776543
No 18
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.45 E-value=1.8e-11 Score=113.24 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=119.0
Q ss_pred eEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019091 151 FGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 151 FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
||||.+.+ .+.||.++-..++++.+|+++.+. ..+..+.|.|..+..+++.||+++.. .+.++|+++.++..-...
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~~~~~~~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-EVIDLPGPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEESSSEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeE-EEEecCCCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 68999998 589999999999999999988755 33555447777777566999999864 445559999987666655
Q ss_pred ccCCeeeeeceeeEee-CCEEEEEecCC--------CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeC
Q 019091 229 RYKGREVRNLNELEFI-KGEVWANVWQT--------DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~-~G~LyaNv~~s--------n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
...+.+...+|.+.+. +|.+|++.-.. ..|.++|+. +++...++ + ...||||||+|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~------------~~~pNGi~~s~ 143 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--G------------LGFPNGIAFSP 143 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--E------------ESSEEEEEEET
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--C------------cccccceEECC
Confidence 3333367788999887 68999987543 469999999 88655442 1 23689999999
Q ss_pred CCCEEEEecCCCCcEEEEEEe
Q 019091 300 NRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 300 ~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+++.|||+.-.-.+|+++.+.
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred cchheeecccccceeEEEecc
Confidence 999999999999999999985
No 19
>PRK02888 nitrous-oxide reductase; Validated
Probab=99.35 E-value=3.2e-11 Score=126.36 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=139.5
Q ss_pred CCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe---------------------eEEEEEEeCCEEEEEEeeCCEE
Q 019091 115 NDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSY---------------------FGEGLTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 115 d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~---------------------FgeGit~~g~~LY~ltw~~~~v 172 (346)
||+ ||+-.- ...+|-+||+++.|..+.+.+|... |..=+..+|+.++......+.+
T Consensus 140 dGr~~findk--~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 140 DGRYLFINDK--ANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ceeEEEEecC--CCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEE
Confidence 354 554422 4579999999998877776665321 2222222455677778888999
Q ss_pred EEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC----CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-
Q 019091 173 FIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG- 246 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd----Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G- 246 (346)
.++|++++++..++.++ .|++..+++||+++|++. ...++..+|..+...+..+.+. + +.++ ..+|
T Consensus 218 SvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~-----iea~-vkdGK 289 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--R-----IEEA-VKAGK 289 (635)
T ss_pred EEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--H-----HHHh-hhCCC
Confidence 99999999999999996 689999999999999984 3678999998776643333331 1 1112 2244
Q ss_pred EEEEEecCCCeEEEEeCCC-----CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 247 EVWANVWQTDCIARISHED-----GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~T-----G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
+.|++ .|.|.|||.++ .+++..|+++ .-|.|++++|||+.+|||||+.|++.-|.+.-
T Consensus 290 ~~~V~---gn~V~VID~~t~~~~~~~v~~yIPVG--------------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 290 FKTIG---GSKVPVVDGRKAANAGSALTRYVPVP--------------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred EEEEC---CCEEEEEECCccccCCcceEEEEECC--------------CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 57763 78999999999 5899999772 25799999999999999999999999999987
Q ss_pred ccccccCC
Q 019091 322 MKRERKDG 329 (346)
Q Consensus 322 ~~~~~~~~ 329 (346)
++.-+++.
T Consensus 353 ~k~~~~~~ 360 (635)
T PRK02888 353 LDDLFDGK 360 (635)
T ss_pred hhhhhhcc
Confidence 66655544
No 20
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=6.7e-10 Score=123.77 Aligned_cols=208 Identities=13% Similarity=0.063 Sum_probs=139.0
Q ss_pred CcceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCC----------e--eEEEEEEe--CCEEEEEEee
Q 019091 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGS----------Y--FGEGLTLL--GEKLFQVTWL 168 (346)
Q Consensus 105 ~FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~----------~--FgeGit~~--g~~LY~ltw~ 168 (346)
.|..|+++++ ++.||++.- +.++|+++|+. |+++..+.- +.. . .+.|++++ ++.||+++..
T Consensus 568 ~~P~gvavd~~~g~lyVaDs--~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDS--NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred CCCceEEEECCCCeEEEEEC--CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 5678999986 478999965 77899999986 555444422 111 1 14667775 6789999999
Q ss_pred CCEEEEEECCCCcEEEEEe-------------------cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEe
Q 019091 169 QKTGFIYDQNNLNKLEEFT-------------------HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~-------------------~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V 228 (346)
++.|.+||..+.. +.++. ...|.|..++++++.||++| +.++|+++|+.+..+. .+.-
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 9999999988754 33331 11356667778889999999 6889999999887653 1111
Q ss_pred -cc----CCe-----eeeeceeeEee-C-CEEEEEecCCCeEEEEeCCCCeEEEEEECC-----chhhhhhhc-c---CC
Q 019091 229 -RY----KGR-----EVRNLNELEFI-K-GEVWANVWQTDCIARISHEDGVVLGWVLLP-----NLRERLVAA-G---YN 287 (346)
Q Consensus 229 -~~----~G~-----pv~~lNELE~~-~-G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~-----~l~~~~~~~-~---~~ 287 (346)
+. +|. .+..++.+.+. + ++||++....+.|.++|+++|.+....--. .+.. .+.. + ..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~-fG~~dG~g~~~ 801 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFK-FGDHDGVGSEV 801 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccc-ccCCCCchhhh
Confidence 00 110 12344556555 3 469999999999999999998753221100 0000 0000 0 01
Q ss_pred CCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 288 GIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 288 ~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
...-|.|||++++|+ +||+.-.-.+|..+..
T Consensus 802 ~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~ 832 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDP 832 (1057)
T ss_pred hccCCceeeEeCCCc-EEEEECCCCEEEEEEC
Confidence 234689999999886 9999988888888876
No 21
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.30 E-value=1.7e-09 Score=102.80 Aligned_cols=215 Identities=20% Similarity=0.307 Sum_probs=127.0
Q ss_pred eeeeEEE-EEEecCCCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-E
Q 019091 90 IYTIQVV-NEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-T 166 (346)
Q Consensus 90 ~~t~~Vv-~t~phd~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-t 166 (346)
.|.+.|- +.+|--.+- .-||+++++ ++||.-+. +...|..+|+ +|++++++++.+--=.|||+..++..|++ .
T Consensus 7 ~y~~~i~~~~l~g~~~e-~SGLTy~pd~~tLfaV~d--~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~ 82 (248)
T PF06977_consen 7 DYRVVIEAKPLPGILDE-LSGLTYNPDTGTLFAVQD--EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE 82 (248)
T ss_dssp T-EEEEEEEE-TT--S--EEEEEEETTTTEEEEEET--TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE
T ss_pred CcEEEEeeeECCCccCC-ccccEEcCCCCeEEEEEC--CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE
Confidence 3455554 344422222 479999986 58998887 5679999997 59999999987533369999988655555 6
Q ss_pred eeCCEEEEEECCC----C--cEEEEEecCC-------CceeEEeeCCCEEEEECC--CCeEEEEeC--CCCc--EEEEEE
Q 019091 167 WLQKTGFIYDQNN----L--NKLEEFTHQM-------KDGWGLATDGKVLFGSDG--SSMLYQIDP--QTLK--VIRKDI 227 (346)
Q Consensus 167 w~~~~v~V~D~~t----l--~~i~ti~~~~-------peGwGLt~Dg~~LyvSdG--s~~l~vIDp--~T~k--vi~~I~ 227 (346)
.+.+.+++++..+ . ....+++.+. -||.+.++.+++||+.-. ...|+-++. .... +.....
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 6789999888722 1 1223444321 387778888899999763 346888875 2222 222222
Q ss_pred eccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019091 228 VRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 228 V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
+...+..+..+..+.+. .|.+|+=.-.+..|+++| .+|+++..+++..-...+. .....|.|||+|++| +||
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~----~~~~QpEGIa~d~~G-~LY 236 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS----KDIPQPEGIAFDPDG-NLY 236 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S----S---SEEEEEE-TT---EE
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc----cccCCccEEEECCCC-CEE
Confidence 22222334445567766 579999888899999999 8999999998854332222 123478999999875 899
Q ss_pred EecCCCCcEEE
Q 019091 306 VTGKLWPKLYE 316 (346)
Q Consensus 306 VTGK~Wp~l~e 316 (346)
|.+. |++|-
T Consensus 237 IvsE--pNlfy 245 (248)
T PF06977_consen 237 IVSE--PNLFY 245 (248)
T ss_dssp EEET--TTEEE
T ss_pred EEcC--CceEE
Confidence 9986 76653
No 22
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.26 E-value=9.8e-09 Score=92.84 Aligned_cols=203 Identities=16% Similarity=0.222 Sum_probs=140.7
Q ss_pred EEEEEEecCCCCcceeE--EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019091 94 QVVNEFPHDPRAFTQGL--LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL--~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
+++-+++.. ..+..++ .+..++++|+++ ++..|..+|+.||+++-+..++...... ....++++|+.+ .++.
T Consensus 14 ~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~-~~~~ 87 (238)
T PF13360_consen 14 KELWSYDLG-PGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGT-SDGS 87 (238)
T ss_dssp EEEEEEECS-SSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEE-TTSE
T ss_pred CEEEEEECC-CCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeeccccccce-eeeccccccccc-ceee
Confidence 445555552 2344566 554578999985 4579999999999999999986544333 477899999999 4569
Q ss_pred EEEEECCCCcEEEEE-ecC---CC--ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC--Ceeeee----ce
Q 019091 172 GFIYDQNNLNKLEEF-THQ---MK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GREVRN----LN 239 (346)
Q Consensus 172 v~V~D~~tl~~i~ti-~~~---~p--eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~--G~pv~~----lN 239 (346)
++.+|..|++++.++ ... .+ .....+.+++.+|+...+..|+.+|++|++++-+.++... ..++.. ..
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 167 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDING 167 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEE
T ss_pred eEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeeccccc
Confidence 999999999999996 321 11 1223455699999998899999999999999999988542 112111 11
Q ss_pred eeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 240 ELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 240 ELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+-+.+|++|+...... +..+|.++|+++ | .. .+. .+.++ ...+++.+|++. ..++|+-+++
T Consensus 168 ~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~-w-~~-~~~------------~~~~~-~~~~~~~l~~~~-~~~~l~~~d~ 229 (238)
T PF13360_consen 168 SPVISDGRVYVSSGDGR-VVAVDLATGEKL-W-SK-PIS------------GIYSL-PSVDGGTLYVTS-SDGRLYALDL 229 (238)
T ss_dssp EEECCTTEEEEECCTSS-EEEEETTTTEEE-E-EE-CSS-------------ECEC-EECCCTEEEEEE-TTTEEEEEET
T ss_pred ceEEECCEEEEEcCCCe-EEEEECCCCCEE-E-Ee-cCC------------CccCC-ceeeCCEEEEEe-CCCEEEEEEC
Confidence 23344789999876554 455599999977 5 22 111 12221 346789999999 7899998875
Q ss_pred e
Q 019091 320 R 320 (346)
Q Consensus 320 ~ 320 (346)
.
T Consensus 230 ~ 230 (238)
T PF13360_consen 230 K 230 (238)
T ss_dssp T
T ss_pred C
Confidence 3
No 23
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.06 E-value=1.3e-07 Score=85.46 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=107.6
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEE--EE-eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEE
Q 019091 127 RSSVRRVALETGKVEAINQMEGSYFGEGL--TL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVL 203 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGi--t~-~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~L 203 (346)
++.|..+|+++|+++-+..+.+. ++.++ +. .++++|+.+ .++.++.+|++|++++.+++.+.+-......+++.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-IGGPVATAVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-CSSEEETEEEETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CCCccceEEEeCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence 35899999999999999988431 33444 44 889999995 789999999999999999997522222246678888
Q ss_pred EEECCCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 204 FGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 204 yvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
|+...++.|+.+|++|++++-++.-.. ...++...-...+.++.+|+... ...|..+|++||+++-...+
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEES
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeec
Confidence 887677799999999999988753322 11111111123344778888775 88999999999999999977
No 24
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=99.04 E-value=8e-09 Score=101.85 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=94.2
Q ss_pred CCEEEEEEe----eCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEEC--------C--CCeEEEEeCCCCcEEE
Q 019091 159 GEKLFQVTW----LQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD--------G--SSMLYQIDPQTLKVIR 224 (346)
Q Consensus 159 g~~LY~ltw----~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSd--------G--s~~l~vIDp~T~kvi~ 224 (346)
.+|+|+.+- ...+++|||.++++.++.++.+.-.+..+++||+.+|+++ | ++-|.++|++|++.++
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~ 81 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG 81 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence 478998875 2468999999999999999987556688999999999865 1 7789999999999999
Q ss_pred EEEeccCCe--eeeeceeeEe--eCCEEEE-EecCCCeEEEEeCCCCeEEEEEECCchhhh
Q 019091 225 KDIVRYKGR--EVRNLNELEF--IKGEVWA-NVWQTDCIARISHEDGVVLGWVLLPNLRER 280 (346)
Q Consensus 225 ~I~V~~~G~--pv~~lNELE~--~~G~Lya-Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~ 280 (346)
.|.+....+ .....|-+.. .+.++|| |.-....|.|||.+.++|+.+|++++|...
T Consensus 82 EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i 142 (342)
T PF06433_consen 82 EIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI 142 (342)
T ss_dssp EEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE
T ss_pred eEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE
Confidence 999964211 1123333333 3457887 666688999999999999999999999643
No 25
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=3.5e-08 Score=96.46 Aligned_cols=201 Identities=19% Similarity=0.304 Sum_probs=136.0
Q ss_pred EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-cc----CCCeeEEEEEEeCCEEEEEEee--
Q 019091 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QM----EGSYFGEGLTLLGEKLFQVTWL-- 168 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l----~~~~FgeGit~~g~~LY~ltw~-- 168 (346)
.+.+++ +..++.|..++.++.|+.+-- .+..+|++++..+..+ .. +...+-.|..--.+.+|+.|-.
T Consensus 59 ~~~~~~-p~~~~~~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~ 132 (307)
T COG3386 59 KRVFPS-PGGFSSGALIDAGGRLIACEH-----GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYF 132 (307)
T ss_pred eEEEEC-CCCcccceeecCCCeEEEEcc-----ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCcc
Confidence 344555 667778999987778887743 5777888877663333 21 2244555555555788887633
Q ss_pred ---------CCEEEEEECCCCcEEEEEec--CCCceeEEeeCCCEEEEECC-CCeEEEEeCC--CCcEEEEE-Eecc---
Q 019091 169 ---------QKTGFIYDQNNLNKLEEFTH--QMKDGWGLATDGKVLFGSDG-SSMLYQIDPQ--TLKVIRKD-IVRY--- 230 (346)
Q Consensus 169 ---------~~~v~V~D~~tl~~i~ti~~--~~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~--T~kvi~~I-~V~~--- 230 (346)
.+.++.||+ ..+.++-+.- ..+.|.+++||++.||++|. .+.|+.+|.. +..+-.+. .+..
T Consensus 133 ~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~ 211 (307)
T COG3386 133 DLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEE 211 (307)
T ss_pred ccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCC
Confidence 356899998 3444444432 25799999999999999995 7899999754 34433321 1111
Q ss_pred CCeeeeeceeeEee-CCEEE-EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 231 KGREVRNLNELEFI-KGEVW-ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 231 ~G~pv~~lNELE~~-~G~Ly-aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
.|.|=+ +..+ +|.|| +..|....|.+++|+ |+.++.|.++.- .+.|-..--++.++||||.
T Consensus 212 ~G~PDG----~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~------------~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 212 PGLPDG----MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK------------RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCCc----eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC------------CCccceEeCCCcCEEEEEe
Confidence 244432 3333 78999 788888899999999 999999988431 1234344556789999999
Q ss_pred CCCCc------------EEEEEEe
Q 019091 309 KLWPK------------LYEINLR 320 (346)
Q Consensus 309 K~Wp~------------l~ev~l~ 320 (346)
-.+.- ||.+++.
T Consensus 275 ~~~~~~~~~~~~~~~G~lf~~~~~ 298 (307)
T COG3386 275 ARSGMSRMLTADPLGGGLFSLRLE 298 (307)
T ss_pred cCCCCCccccccccCceEEEEecc
Confidence 88844 9998864
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.01 E-value=3.5e-07 Score=80.12 Aligned_cols=183 Identities=13% Similarity=0.146 Sum_probs=130.1
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEE
Q 019091 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
...+.+.+++.++.+++ .+..|.+||+.+++....+..... ....+.... +.++++.-.++.+.++|..+.+.+..
T Consensus 96 i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 172 (289)
T cd00200 96 VSSVAFSPDGRILSSSS--RDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172 (289)
T ss_pred EEEEEEcCCCCEEEEec--CCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee
Confidence 36888988877777766 456999999999988777763221 123355544 33444444589999999999988888
Q ss_pred EecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEecCCCeEEEEe
Q 019091 186 FTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQTDCIARIS 262 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv~~sn~I~vID 262 (346)
+... ......++++++.++++..++.|.++|..+.+.+..+.... .+ ++.+.+.. +.+++..-..+.|.+.|
T Consensus 173 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~---i~~~~~~~~~~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NG---VNSVAFSPDGYLLASGSEDGTIRVWD 247 (289)
T ss_pred EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--Cc---eEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 8753 23445577888899988778899999999988877764322 12 23355554 66776665688999999
Q ss_pred CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 263 ~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
..+++.+..+... .....+++++++++.|++++..
T Consensus 248 ~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 248 LRTGECVQTLSGH-------------TNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred cCCceeEEEcccc-------------CCcEEEEEECCCCCEEEEecCC
Confidence 9999988877421 1246889999998887777543
No 27
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=99.01 E-value=6.6e-08 Score=92.58 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=116.2
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
+-+++++.+.++.-|.+|+++.+ ++||.=|= .+....+||.+|-+.+.+..++.+- =|++.++++||+++. +++
T Consensus 77 tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTW--k~~~~f~yd~~tl~~~~~~~y~~EG--WGLt~dg~~Li~SDG-S~~ 150 (264)
T PF05096_consen 77 TGKVLQSVPLPPRYFGEGITILG-DKLYQLTW--KEGTGFVYDPNTLKKIGTFPYPGEG--WGLTSDGKRLIMSDG-SSR 150 (264)
T ss_dssp TSSEEEEEE-TTT--EEEEEEET-TEEEEEES--SSSEEEEEETTTTEEEEEEE-SSS----EEEECSSCEEEE-S-SSE
T ss_pred CCcEEEEEECCccccceeEEEEC-CEEEEEEe--cCCeEEEEccccceEEEEEecCCcc--eEEEcCCCEEEEECC-ccc
Confidence 45788999999999999999994 78887765 5569999999999999999998764 558999999999998 799
Q ss_pred EEEEECCCCcEEEEEecC-CCceeE----EeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc-------CCe---ee
Q 019091 172 GFIYDQNNLNKLEEFTHQ-MKDGWG----LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-------KGR---EV 235 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwG----Lt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~-------~G~---pv 235 (346)
++.+|++|++.++++.+. ...... |=.-++.+|+-= .++.|..|||+|++|++.+.... .+. ..
T Consensus 151 L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~ 230 (264)
T PF05096_consen 151 LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD 230 (264)
T ss_dssp EEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT
T ss_pred eEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC
Confidence 999999999999999974 112222 222356777743 69999999999999999998754 011 13
Q ss_pred eeceeeEee--CCEEEEEecCCCeEEEE
Q 019091 236 RNLNELEFI--KGEVWANVWQTDCIARI 261 (346)
Q Consensus 236 ~~lNELE~~--~G~LyaNv~~sn~I~vI 261 (346)
..||-+.|+ .+++|++=-.=+.+..|
T Consensus 231 dVLNGIAyd~~~~~l~vTGK~Wp~lyeV 258 (264)
T PF05096_consen 231 DVLNGIAYDPETDRLFVTGKLWPKLYEV 258 (264)
T ss_dssp S-EEEEEEETTTTEEEEEETT-SEEEEE
T ss_pred CeeEeEeEeCCCCEEEEEeCCCCceEEE
Confidence 468988886 56899986444555555
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.99 E-value=4.6e-07 Score=79.37 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=129.1
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEE
Q 019091 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
...+.+++++.++.+.+ .+..|.+||..+++............ ..+... ++.++.+. .++.+.++|..+.+.+.
T Consensus 12 i~~~~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~ 87 (289)
T cd00200 12 VTCVAFSPDGKLLATGS--GDGTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGS-SDKTIRLWDLETGECVR 87 (289)
T ss_pred EEEEEEcCCCCEEEEee--cCcEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEc-CCCeEEEEEcCcccceE
Confidence 46899998876666655 35699999999998766665443332 234443 34555554 48999999999988888
Q ss_pred EEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEecCCCeEEEE
Q 019091 185 EFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQTDCIARI 261 (346)
Q Consensus 185 ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv~~sn~I~vI 261 (346)
++.... .....++++++.++++..++.|.++|..+.+....+.... .+ +..+.+.. +.+++.....+.|.+.
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~---i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DW---VNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC--Cc---EEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 876431 2334455666666666568899999999888877776322 12 23455554 4555544457889999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|..+++.+..+... ....+.++++|+++.+++++. .+.++-..+
T Consensus 163 d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~ 206 (289)
T cd00200 163 DLRTGKCVATLTGH-------------TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDL 206 (289)
T ss_pred EccccccceeEecC-------------ccccceEEECCCcCEEEEecC-CCcEEEEEC
Confidence 99999988877531 124578999999988888886 555555444
No 29
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=3.6e-08 Score=96.84 Aligned_cols=160 Identities=16% Similarity=0.229 Sum_probs=108.8
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec--c--CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC----
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ--M--EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN---- 179 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~--l--~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t---- 179 (346)
.-..++|+++..++.-| |.++|..||++.|++....+ + +..|--.-+.+.++..|+.++.+++|.|++.+.
T Consensus 148 H~a~~tP~~~~l~v~DL-G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 148 HSANFTPDGRYLVVPDL-GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ceeeeCCCCCEEEEeec-CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 44567788876666565 89999999999998755542 2 233434445556788999999999999987665
Q ss_pred CcEEEEEec---C-CCceeE----EeeCCCEEEEEC-CCCe--EEEEeCCCCcEEEEEEeccCCe-eeeeceeeEeeCCE
Q 019091 180 LNKLEEFTH---Q-MKDGWG----LATDGKVLFGSD-GSSM--LYQIDPQTLKVIRKDIVRYKGR-EVRNLNELEFIKGE 247 (346)
Q Consensus 180 l~~i~ti~~---~-~peGwG----Lt~Dg~~LyvSd-Gs~~--l~vIDp~T~kvi~~I~V~~~G~-pv~~lNELE~~~G~ 247 (346)
++.+.++.. . .+.-|+ +++||+.||+|| |.+. ++-||+.++++.---.....|+ |..+- +...+..
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~--i~~~g~~ 304 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN--INPSGRF 304 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce--eCCCCCE
Confidence 344444432 1 122233 899999999999 5664 5567888876532222223455 65531 4445668
Q ss_pred EEEEecCCCe--EEEEeCCCCeEEE
Q 019091 248 VWANVWQTDC--IARISHEDGVVLG 270 (346)
Q Consensus 248 LyaNv~~sn~--I~vID~~TG~Vv~ 270 (346)
|+|++..+|. |..||++||++..
T Consensus 305 Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 305 LIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEEccCCCcEEEEEEcCCCceEEe
Confidence 9999998886 6679999999743
No 30
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.93 E-value=4e-07 Score=89.27 Aligned_cols=174 Identities=12% Similarity=0.033 Sum_probs=119.8
Q ss_pred eeEEEEEEecCCCC----cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe
Q 019091 92 TIQVVNEFPHDPRA----FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~----FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw 167 (346)
+.+++=+++.+... ...+..+. ++++|+++. +..|..+|.+||+++=+..++... .-+.++.++++|+.+.
T Consensus 39 ~~~~~W~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~---~g~v~a~d~~tG~~~W~~~~~~~~-~~~p~v~~~~v~v~~~ 113 (377)
T TIGR03300 39 KVDQVWSASVGDGVGHYYLRLQPAVA-GGKVYAADA---DGTVVALDAETGKRLWRVDLDERL-SGGVGADGGLVFVGTE 113 (377)
T ss_pred cceeeeEEEcCCCcCccccccceEEE-CCEEEEECC---CCeEEEEEccCCcEeeeecCCCCc-ccceEEcCCEEEEEcC
Confidence 35556566653321 12355665 579999875 248999999999999888887653 3457778999998875
Q ss_pred eCCEEEEEECCCCcEEEEEecCCCceeE-EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC
Q 019091 168 LQKTGFIYDQNNLNKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti~~~~peGwG-Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G 246 (346)
++.++.+|++|++++-+.+.+. +-.. ...+++.+|+..+++.|+.+|++|++++-+................-..++
T Consensus 114 -~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~ 191 (377)
T TIGR03300 114 -KGEVIALDAEDGKELWRAKLSS-EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADG 191 (377)
T ss_pred -CCEEEEEECCCCcEeeeeccCc-eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECC
Confidence 5899999999999999887641 1111 122567899988888999999999998776655321100000001223467
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019091 247 EVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
.+|+.. ....+..||+++|+++-...
T Consensus 192 ~v~~~~-~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 192 GVLVGF-AGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred EEEEEC-CCCEEEEEEccCCCEeeeec
Confidence 888765 36789999999999875543
No 31
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=6.9e-07 Score=87.95 Aligned_cols=212 Identities=11% Similarity=0.079 Sum_probs=139.6
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCC-CcEEEEe---cc-CC---------CeeEEEEEE
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET-GKVEAIN---QM-EG---------SYFGEGLTL 157 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~T-gkv~~~~---~l-~~---------~~FgeGit~ 157 (346)
+++.++..+.+..+ +--+.++++|++..++. |..+.|+++-+++ |.+...+ .- ++ ..--..+++
T Consensus 77 ~Lt~ln~~~~~g~~-p~yvsvd~~g~~vf~An-Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 77 RLTFLNRQTLPGSP-PCYVSVDEDGRFVFVAN-YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred eEEEeeccccCCCC-CeEEEECCCCCEEEEEE-ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence 45666666654444 25788888886444433 7888999998855 6543332 21 11 133467899
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-----CCceeEEeeCCCEEEEECC-CCeEEEEeCCC--C--cEEEEEE
Q 019091 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG-SSMLYQIDPQT--L--KVIRKDI 227 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-----~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T--~--kvi~~I~ 227 (346)
+++.|++.+-...++++||.+++++...-+.. .|-...+.|+++.+|+-+. +++|.+++-.+ + +.+.+|.
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec
Confidence 99999999999999999999988776655442 3566669999999999775 88877765443 3 3333333
Q ss_pred ecc---CCeeeeeceeeEee-CC-EEEEEecCCCeE--EEEeCCCCeE--EEEEECCchhhhhhhccCCCCceeeEEEEe
Q 019091 228 VRY---KGREVRNLNELEFI-KG-EVWANVWQTDCI--ARISHEDGVV--LGWVLLPNLRERLVAAGYNGIDVLNGIAWD 298 (346)
Q Consensus 228 V~~---~G~pv~~lNELE~~-~G-~LyaNv~~sn~I--~vID~~TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d 298 (346)
+-. .|.. ..-++-.. || +|||.+-.-|.| ..||+.+|+. +++.++. +..|-+-.++
T Consensus 235 tlP~dF~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-------------g~~PR~F~i~ 299 (346)
T COG2706 235 TLPEDFTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-------------GQFPRDFNIN 299 (346)
T ss_pred cCccccCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-------------CcCCccceeC
Confidence 311 1211 01122222 45 799999877765 5689999973 3444331 2245666799
Q ss_pred CCCCEEEEecCCCCcEEEEEEe
Q 019091 299 SNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 299 ~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+.++.|+++|++.+++-.-+..
T Consensus 300 ~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 300 PSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCEEEEEccCCCcEEEEEEc
Confidence 9999999999999987555443
No 32
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=9.2e-07 Score=87.78 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=109.8
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC----------eeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS----------YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 111 ~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~----------~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
.+. ++++|+.+. ...|..+|.+||+++=+..++.. ....+.++.++++|+.+ .++.++.+|++|+
T Consensus 66 vv~-~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-~~g~l~ald~~tG 140 (394)
T PRK11138 66 AVA-YNKVYAADR---AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS-EKGQVYALNAEDG 140 (394)
T ss_pred EEE-CCEEEEECC---CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc-CCCEEEEEECCCC
Confidence 344 689999865 34899999999999877776541 22345788899999876 4678999999999
Q ss_pred cEEEEEecCCCceeE-EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEE
Q 019091 181 NKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIA 259 (346)
Q Consensus 181 ~~i~ti~~~~peGwG-Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~ 259 (346)
+++-+.+.+. +.+. -.-.++.+|+..+++.|+-+|++|++++=+...............-...+|.+|+... .+.+.
T Consensus 141 ~~~W~~~~~~-~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-~g~v~ 218 (394)
T PRK11138 141 EVAWQTKVAG-EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-NGRVS 218 (394)
T ss_pred CCcccccCCC-ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-CCEEE
Confidence 9999988641 2221 1224678899888889999999999998666653210000000011134678887653 67899
Q ss_pred EEeCCCCeEEEEEEC
Q 019091 260 RISHEDGVVLGWVLL 274 (346)
Q Consensus 260 vID~~TG~Vv~~I~l 274 (346)
.+|+++|+++-...+
T Consensus 219 a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 219 AVLMEQGQLIWQQRI 233 (394)
T ss_pred EEEccCChhhheecc
Confidence 999999998655443
No 33
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=7.7e-07 Score=88.35 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=121.2
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee----------EEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019091 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF----------GEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F----------geGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
++.+|++++ +..+..+|+++|+++-+.++..... ...-.+.++.+|+.+. ++.++.+|+++++++-
T Consensus 205 ~~~v~~~~~---~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g~l~ald~~tG~~~W 280 (394)
T PRK11138 205 FGGAIVGGD---NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NGNLVALDLRSGQIVW 280 (394)
T ss_pred CCEEEEEcC---CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CCeEEEEECCCCCEEE
Confidence 356777654 4589999999999766654422110 0111346899999885 5899999999999998
Q ss_pred EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCC
Q 019091 185 EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 185 ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~ 264 (346)
+.+.+.+. .+..+++++|+.+.++.|+.+|++|++++=+.....+ .. ....-..+|+||+.. .+..|..||++
T Consensus 281 ~~~~~~~~--~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~---~~sp~v~~g~l~v~~-~~G~l~~ld~~ 353 (394)
T PRK11138 281 KREYGSVN--DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RL---LTAPVLYNGYLVVGD-SEGYLHWINRE 353 (394)
T ss_pred eecCCCcc--CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-Cc---ccCCEEECCEEEEEe-CCCEEEEEECC
Confidence 87765222 3456789999999889999999999987543322111 11 112234689999876 36789999999
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
||+++.+.++..- .+....++. +++|||..+ .++||.+++
T Consensus 354 tG~~~~~~~~~~~------------~~~s~P~~~--~~~l~v~t~-~G~l~~~~~ 393 (394)
T PRK11138 354 DGRFVAQQKVDSS------------GFLSEPVVA--DDKLLIQAR-DGTVYAITR 393 (394)
T ss_pred CCCEEEEEEcCCC------------cceeCCEEE--CCEEEEEeC-CceEEEEeC
Confidence 9999999977210 011122232 468998854 568888764
No 34
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.75 E-value=2.6e-06 Score=83.52 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=105.7
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe----------eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019091 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----------FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~----------FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
++.+|.++. +..|..+|+++|+++-+..+.... +.....+.++++|+.++ ++.++.+|+++++++-
T Consensus 190 ~~~v~~~~~---~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 190 DGGVLVGFA---GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-QGRVAALDLRSGRVLW 265 (377)
T ss_pred CCEEEEECC---CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-CCEEEEEECCCCcEEE
Confidence 356676643 348999999999987655432110 11112346889999886 5789999999999998
Q ss_pred EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEE-EeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeC
Q 019091 185 EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD-IVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISH 263 (346)
Q Consensus 185 ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I-~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~ 263 (346)
+.+.+ ....+..+++++|+.+.+..|+.+|+.|++++-+. .... .... ..-..+++||+.. .+..|..+|+
T Consensus 266 ~~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~s---sp~i~g~~l~~~~-~~G~l~~~d~ 337 (377)
T TIGR03300 266 KRDAS--SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLT---APAVVGGYLVVGD-FEGYLHWLSR 337 (377)
T ss_pred eeccC--CccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccC--Cccc---cCEEECCEEEEEe-CCCEEEEEEC
Confidence 88753 22234567899999988899999999999887554 2221 1111 1224678999876 4778999999
Q ss_pred CCCeEEEEEEC
Q 019091 264 EDGVVLGWVLL 274 (346)
Q Consensus 264 ~TG~Vv~~I~l 274 (346)
+||+++.++++
T Consensus 338 ~tG~~~~~~~~ 348 (377)
T TIGR03300 338 EDGSFVARLKT 348 (377)
T ss_pred CCCCEEEEEEc
Confidence 99999999976
No 35
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=5.5e-07 Score=88.12 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=108.9
Q ss_pred CCeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeE-EeeCCCEEEEECCCCeEEEEeCCCCcEEE
Q 019091 148 GSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 148 ~~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG-Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
...+|||-..+. +.||-++...++++.+|+.+.+. ..+..+....-+ +-.++..|++++. -++.+|+++...+.
T Consensus 23 ~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t 99 (307)
T COG3386 23 GATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKIT 99 (307)
T ss_pred ccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeE
Confidence 356788877754 66999999999999999986643 444443112223 3345678888873 34455556655544
Q ss_pred EEEeccCCeeeeeceeeEee-CCEEEEEecC-----------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCcee
Q 019091 225 KDIVRYKGREVRNLNELEFI-KGEVWANVWQ-----------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVL 292 (346)
Q Consensus 225 ~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~-----------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vl 292 (346)
.+.-.+.|.+...+|+.-.. +|.+|++.-. ...|+++||. |.++.-+. + ....+
T Consensus 100 ~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~--~-----------~~~~~ 165 (307)
T COG3386 100 LLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLD--D-----------DLTIP 165 (307)
T ss_pred EeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeec--C-----------cEEec
Confidence 44444556777889998766 7999987644 2369999995 54444331 1 13478
Q ss_pred eEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 293 NGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 293 NGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
|||||+||+++||++--.-..++++.+.+
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 99999999999999987778899888864
No 36
>PTZ00421 coronin; Provisional
Probab=98.61 E-value=3.6e-05 Score=79.90 Aligned_cols=197 Identities=10% Similarity=0.008 Sum_probs=124.7
Q ss_pred cceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEE-------EEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEE
Q 019091 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVE-------AINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 106 FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~-------~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D 176 (346)
-...+.|+| |+.++.+++ .+..|++||..++... ..+.- ........+.+.++.+.++.-.++.+.++|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS--~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CEEEEEEcCCCCCEEEEEe--CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 347999998 777777777 5679999999876431 11111 112222222223344555556689999999
Q ss_pred CCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEe
Q 019091 177 QNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANV 252 (346)
Q Consensus 177 ~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv 252 (346)
.++.+.+.++... .-....+++||+.|+.+..+.+|.++|+.+.+.+.++........ +...+. ++.+.+.-
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~----~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS----QRCLWAKRKDLIITLG 230 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc----eEEEEcCCCCeEEEEe
Confidence 9999988888632 124455678999988888889999999999998877655332211 112222 24454433
Q ss_pred c---CCCeEEEEeCCCCe-EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 253 W---QTDCIARISHEDGV-VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 253 ~---~sn~I~vID~~TG~-Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+ .++.|.+-|..+.. .+..+++. ......-..|+++++.||++|+....|.-.++.
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d------------~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPYSTVDLD------------QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCceeEeccC------------CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 2 24678888887654 33333221 011233467999999999999988877555554
No 37
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=1.3e-05 Score=80.87 Aligned_cols=190 Identities=19% Similarity=0.235 Sum_probs=115.4
Q ss_pred eeEEEecCCE-E-EEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEE
Q 019091 108 QGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~-L-yeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i 183 (346)
....++|||+ | |.+. ..|...|.++|+++|+.......+.....-..+++|++|+.+... +..++++|.++.+.
T Consensus 205 ~~p~wSpDG~~lay~s~-~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~- 282 (435)
T PRK05137 205 LTPRFSPNRQEITYMSY-ANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT- 282 (435)
T ss_pred EeeEECCCCCEEEEEEe-cCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-
Confidence 4678889984 4 5543 346789999999999865444444443444466778887655333 35699999988765
Q ss_pred EEEecC--CCceeEEeeCCCEE-EEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe--eCCEEEE-EecC-
Q 019091 184 EEFTHQ--MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF--IKGEVWA-NVWQ- 254 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~L-yvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~--~~G~Lya-Nv~~- 254 (346)
.++... ....-..+|||++| |+|| |..+|+++|.++.++. ++.-+. +. .+...+ .+.+|+. ....
T Consensus 283 ~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~-~~----~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 283 TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGG-GR----YSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCC-Cc----ccCeEECCCCCEEEEEEcCCC
Confidence 334322 11223578999976 5576 4679999998876653 443321 11 112223 3345543 3222
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC-----CcEEEEEEe
Q 019091 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW-----PKLYEINLR 320 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W-----p~l~ev~l~ 320 (346)
...|.++|++++.+. .+.- + ......+|+|+++.++.+...- ..||.+.+.
T Consensus 357 ~~~i~~~d~~~~~~~-~lt~-~-------------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 357 QFSIGVMKPDGSGER-ILTS-G-------------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred ceEEEEEECCCCceE-eccC-C-------------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 247999999777642 2211 1 0124578999999987754322 578988874
No 38
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.57 E-value=1.7e-05 Score=77.61 Aligned_cols=193 Identities=17% Similarity=0.199 Sum_probs=132.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEE-eCCEEEEE-Ee---eCCEEEEEECC-C
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTL-LGEKLFQV-TW---LQKTGFIYDQN-N 179 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~-~g~~LY~l-tw---~~~~v~V~D~~-t 179 (346)
.|++.+|+....+.-++.--....+||..+|++.+.+.-+ ..+||+|+-- +|+.||.. +- ..+.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 5788887553333323333469999999999999988654 3577998876 56788877 22 26789999999 9
Q ss_pred CcEEEEEecC--CCceeEEeeCCCEEEEECC---C---------------CeEEEEeCCCCcEEEEEEec--c-------
Q 019091 180 LNKLEEFTHQ--MKDGWGLATDGKVLFGSDG---S---------------SMLYQIDPQTLKVIRKDIVR--Y------- 230 (346)
Q Consensus 180 l~~i~ti~~~--~peGwGLt~Dg~~LyvSdG---s---------------~~l~vIDp~T~kvi~~I~V~--~------- 230 (346)
++.+++|+.. .|.=.-+.+||+.|.|+|| + ..|..+|+.+++++.+..+. .
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 9999999963 3555668999999999996 2 25888999999987776551 1
Q ss_pred -----C----------Ceee--------eecee----eE-----------ee-------CC-EEEEEecCCCeEEEEeCC
Q 019091 231 -----K----------GREV--------RNLNE----LE-----------FI-------KG-EVWANVWQTDCIARISHE 264 (346)
Q Consensus 231 -----~----------G~pv--------~~lNE----LE-----------~~-------~G-~LyaNv~~sn~I~vID~~ 264 (346)
+ |.+- ....+ ++ |+ +| .+.++.-..+++.+.|.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 1 1100 00000 11 11 33 567888889999999999
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019091 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
||++++...+.+. .|+|-.+++ |.+|... +.++.+.
T Consensus 248 tg~~~~~~~l~D~---------------cGva~~~~~--f~~ssG~-G~~~~~~ 283 (305)
T PF07433_consen 248 TGRLLGSVPLPDA---------------CGVAPTDDG--FLVSSGQ-GQLIRLS 283 (305)
T ss_pred CCCEeeccccCce---------------eeeeecCCc--eEEeCCC-ccEEEcc
Confidence 9999999977443 788887766 4444332 4455444
No 39
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=1.9e-05 Score=80.54 Aligned_cols=191 Identities=14% Similarity=0.058 Sum_probs=112.8
Q ss_pred eEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcEEEE
Q 019091 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEE 185 (346)
Q Consensus 109 GL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~i~t 185 (346)
...++|||+ |+.++-..+...|.++|+++|+.......+...+.-..+++|++|+.+...++ .++++|.++.+.. +
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-R 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-E
Confidence 568889984 44333334677999999999986554445443334456778888876654444 5999999887653 3
Q ss_pred EecC--CCceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC--CCeE
Q 019091 186 FTHQ--MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ--TDCI 258 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~--sn~I 258 (346)
+... ....-.+++||++++. ++ |..+|+.+|.++.+.. ++.... ..... . .+...+.+||..... ...|
T Consensus 301 lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g-~~~~~-~-~~SpDG~~l~~~~~~~g~~~I 376 (448)
T PRK04792 301 ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEG-EQNLG-G-SITPDGRSMIMVNRTNGKFNI 376 (448)
T ss_pred CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCC-CCCcC-e-eECCCCCEEEEEEecCCceEE
Confidence 3321 1223357899998755 65 4679999999988754 333211 11110 0 122233466543332 2368
Q ss_pred EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019091 259 ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
.++|+++|++.. +.- . . .... .+|+|+++.++.+...-. .||.+.+
T Consensus 377 ~~~dl~~g~~~~-lt~-~-~---------~d~~---ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 377 ARQDLETGAMQV-LTS-T-R---------LDES---PSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EEEECCCCCeEE-ccC-C-C---------CCCC---ceECCCCCEEEEEEecCCceEEEEEEC
Confidence 999999998632 211 1 0 0111 369999998876554332 3555544
No 40
>PTZ00420 coronin; Provisional
Probab=98.54 E-value=4.1e-05 Score=80.78 Aligned_cols=201 Identities=11% Similarity=0.045 Sum_probs=125.7
Q ss_pred CcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcE-EEEe-----ccC---CCeeEEEEEEeCCEEEEEEeeCCEEEE
Q 019091 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKV-EAIN-----QME---GSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (346)
Q Consensus 105 ~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv-~~~~-----~l~---~~~FgeGit~~g~~LY~ltw~~~~v~V 174 (346)
.....+.|+|+ +.++.|++ .+..|++||+.++.. ...+ .+. .........+.+..+.++.-.++.+.+
T Consensus 75 ~~V~~lafsP~~~~lLASgS--~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGS--EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 33478999986 57788877 566999999987532 1110 111 222222222234555566667899999
Q ss_pred EECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeece--eeEeeCCEEEEE
Q 019091 175 YDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN--ELEFIKGEVWAN 251 (346)
Q Consensus 175 ~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lN--ELE~~~G~LyaN 251 (346)
+|..+.+.+.++..+ .-....+++||..|.++..+.+|.++|+.+.+.+.++....+++....+. .+-..+++|.+.
T Consensus 153 WDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 153 WDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred EECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 999999888887653 22445567899988777667899999999999988776644332211110 010122345554
Q ss_pred ecCC---CeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 252 VWQT---DCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 252 v~~s---n~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
-+.. ..|.+-|..+ ++.+..+.+.. . . ..+ -..||++.+.+|++||....++--++
T Consensus 233 G~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~--------~--~~L-~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTSALVTMSIDN-A--------S--APL-IPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EcCCCCccEEEEEECCCCCCceEEEEecC-C--------c--cce-EEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 4432 3699999885 66666664411 0 0 111 13588999999999999886654444
No 41
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=2.9e-05 Score=77.70 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=113.0
Q ss_pred eeEEEecCC-EE-EEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEE
Q 019091 108 QGLLYAEND-TL-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~-~L-yeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i 183 (346)
....++||| +| |.+.. .+...|.++|+++|+.......+.....-..+++|++|+.....+ ..++++|.++.+..
T Consensus 202 ~~p~wSpDG~~la~~s~~-~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFE-QKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcC-CCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 456788888 45 55532 356789999999998655444443322334566788887655443 37999999987653
Q ss_pred EEEec-C-CCceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC--C
Q 019091 184 EEFTH-Q-MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT--D 256 (346)
Q Consensus 184 ~ti~~-~-~peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s--n 256 (346)
.+.. . .......++||++++ .+| |...|+.+|..+.+.. ++... +..... -.+...+++|+...-.. .
T Consensus 281 -~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~--~~~~~~-~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 281 -RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV--GNYNAR-PRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred -EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCCccc-eEECCCCCEEEEEEccCCce
Confidence 3332 1 122235788999765 566 4668999999888754 33322 110000 01223344665433222 3
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEE
Q 019091 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l 319 (346)
.|.++|+++|++.. +. .-. .+ ...+|+|+|+.++.+...- ..||.+.+
T Consensus 356 ~l~~~dl~tg~~~~-lt--~~~----------~~--~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 356 HVAAQDLQRGSVRI-LT--DTS----------LD--ESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEEEEECCCCCEEE-cc--CCC----------CC--CCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 59999999997532 21 100 01 1247999999988775433 34676665
No 42
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=1.9e-05 Score=79.72 Aligned_cols=192 Identities=15% Similarity=0.106 Sum_probs=115.0
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcEEE
Q 019091 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~i~ 184 (346)
.+..++|||+ |+..+-..+...|.++|+++|+.......+.....-.++++|++|+.+...++ .++++|.++.+...
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 4667888884 44333223567899999999986544444433333345667888876655443 69999998876543
Q ss_pred EEecC-CCceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe--eCCEEEEEecCC--C
Q 019091 185 EFTHQ-MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF--IKGEVWANVWQT--D 256 (346)
Q Consensus 185 ti~~~-~peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~--~~G~LyaNv~~s--n 256 (346)
-.... ......+++||++|+ ++| |...|+.+|.++.+.. ++... |... ....+ .+.+|+...... .
T Consensus 287 lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~--g~~~---~~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 287 LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ--GNYN---ARASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC--CCCc---cCEEECCCCCEEEEEECCCCce
Confidence 22221 112346789999765 576 3568999999887643 34332 1111 12233 344665543222 3
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC--CCcEEEEEEe
Q 019091 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL--WPKLYEINLR 320 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~--Wp~l~ev~l~ 320 (346)
.|.++|+++|+.. .+ .. . . .-...+|+|+++.++.+... -..||.+.+.
T Consensus 361 ~I~v~d~~~g~~~-~L--t~---~------~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 361 RIAVMDLSTGSVR-TL--TP---G------S---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred eEEEEECCCCCeE-EC--CC---C------C---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 6999999999864 22 11 0 0 00235799999987766553 3467777663
No 43
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=4.4e-05 Score=77.29 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=115.4
Q ss_pred ceeEEEecCCE--EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcE
Q 019091 107 TQGLLYAENDT--LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNK 182 (346)
Q Consensus 107 TqGL~~~~d~~--LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~ 182 (346)
.....++|||+ +|.+. ..+...|.++|+++|+......++.....-..+++|++|+.+.+.++ .++++|.++.+.
T Consensus 201 ~~~p~wSPDG~~la~~s~-~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTF-ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred eeeeEEcCCCCEEEEEEe-cCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 35788999984 44543 23567999999999986554455443333346678888887755443 699999988765
Q ss_pred EEEEecC-CCceeEEeeCCCEE-EEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE-EEec-CCC
Q 019091 183 LEEFTHQ-MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW-ANVW-QTD 256 (346)
Q Consensus 183 i~ti~~~-~peGwGLt~Dg~~L-yvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly-aNv~-~sn 256 (346)
..-.... .......+|||++| |++| |..+|+.+|+++.+.. ++.. .+..... -.+..++.+|+ ++.. ...
T Consensus 280 ~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~~~-~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 280 RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQD-ADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCccC-EEECCCCCEEEEEEccCCCc
Confidence 4322221 12344678999976 6787 3569999999887653 3432 2211110 01222233554 4332 234
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019091 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
.|.++|+++|++. .+. ... . . ...+|+|||+.|+.+...-+ .|+.+.+
T Consensus 356 ~I~~~dl~~g~~~-~Lt--~~~--------~-~---~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 356 HIAKQDLATGGVQ-VLT--DTF--------L-D---ETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred eEEEEECCCCCeE-EeC--CCC--------C-C---CCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 6999999999853 221 100 0 0 23569999998877665433 2444444
No 44
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.47 E-value=6e-05 Score=74.31 Aligned_cols=180 Identities=17% Similarity=0.140 Sum_probs=107.6
Q ss_pred eeEEEecCCE-E-EEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEE
Q 019091 108 QGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~-L-yeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i 183 (346)
....++|||+ | |.+.. .+...|.++|+++|+.......+...+...+++++++|+..... ...++++|.++.+..
T Consensus 193 ~~p~~Spdg~~la~~~~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFE-SGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT 271 (417)
T ss_pred ecccCCCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE
Confidence 4567888884 4 44433 25578999999999876555555555555567788888766544 346999999876543
Q ss_pred EEEecCC-CceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecC--C
Q 019091 184 EEFTHQM-KDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ--T 255 (346)
Q Consensus 184 ~ti~~~~-peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~--s 255 (346)
.-..... ...-.+++||++|+ +++ |...|+++|..+.+.. ++... +... ....+. || +|+.+... .
T Consensus 272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~--~~~~---~~~~~spdg~~i~~~~~~~~~ 345 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR--GGYN---ASPSWSPDGDLIAFVHREGGG 345 (417)
T ss_pred ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCCc---cCeEECCCCCEEEEEEccCCc
Confidence 3222211 11235688999874 566 3568999999887753 33322 1111 112232 44 55544322 2
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019091 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
..|.++|++++.+.. +. . . ......+|+|+++.|+.+..
T Consensus 346 ~~i~~~d~~~~~~~~-l~--~-------~-----~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 346 FNIAVMDLDGGGERV-LT--D-------T-----GLDESPSFAPNGRMILYATT 384 (417)
T ss_pred eEEEEEeCCCCCeEE-cc--C-------C-----CCCCCceECCCCCEEEEEEe
Confidence 379999999976421 21 0 0 01123578999987776544
No 45
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.47 E-value=3e-05 Score=79.91 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=110.6
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-----eEEEEEEeCCEEEEEEe--------eCCEE
Q 019091 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-----FGEGLTLLGEKLFQVTW--------LQKTG 172 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-----FgeGit~~g~~LY~ltw--------~~~~v 172 (346)
+..|+.+..++++|+++. +..|..+|.+||+++=+..++... ..-+.++.++.+|+.+. ..+.+
T Consensus 101 ~~~g~~~~~~~~V~v~~~---~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v 177 (488)
T cd00216 101 VNRGVAYWDPRKVFFGTF---DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGAL 177 (488)
T ss_pred ccCCcEEccCCeEEEecC---CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEE
Confidence 345766654479999875 359999999999999888776531 23344667888988763 46789
Q ss_pred EEEECCCCcEEEEEecCCCc-----e---------------e---EEeeCCCEEEEECCC------------------Ce
Q 019091 173 FIYDQNNLNKLEEFTHQMKD-----G---------------W---GLATDGKVLFGSDGS------------------SM 211 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~pe-----G---------------w---GLt~Dg~~LyvSdGs------------------~~ 211 (346)
+.+|++|++++-+++...++ . | .+++.++.+|+..++ +.
T Consensus 178 ~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~ 257 (488)
T cd00216 178 RAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS 257 (488)
T ss_pred EEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence 99999999999998763111 0 1 123347888886432 38
Q ss_pred EEEEeCCCCcEEEEEEeccC------CeeeeeceeeEeeCC----EEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 212 LYQIDPQTLKVIRKDIVRYK------GREVRNLNELEFIKG----EVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 212 l~vIDp~T~kvi~~I~V~~~------G~pv~~lNELE~~~G----~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
|+-+|++|++++=+.++... +..-..+-++..++| .+|+..+ +..+..+|++||+++=..++
T Consensus 258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~-~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK-NGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC-CceEEEEECCCCcEeeEeEe
Confidence 99999999999866554321 110001111112344 3666653 67799999999998876654
No 46
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=4.8e-05 Score=77.26 Aligned_cols=191 Identities=18% Similarity=0.148 Sum_probs=117.4
Q ss_pred eEEEecCCE--EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe--eCCEEEEEECCCCcEEE
Q 019091 109 GLLYAENDT--LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--LQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 109 GL~~~~d~~--LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw--~~~~v~V~D~~tl~~i~ 184 (346)
...++|||+ +|.++...+...|.++|+++|+...-...+........+++|++|..+.. .+..++++|.++.+. .
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E
Confidence 566788883 66544433567999999999987666565554555557788887765543 346899999877653 3
Q ss_pred EEecC--CCceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCE-EEEEecC----
Q 019091 185 EFTHQ--MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE-VWANVWQ---- 254 (346)
Q Consensus 185 ti~~~--~peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~-LyaNv~~---- 254 (346)
.+... .-.....+|||++|+. || |...|+++|.++.+..+ +. ..|.. +. .+..++++ +|+....
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt--~~g~~--~~-~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VV--FHGKN--NS-SVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-Cc--cCCCc--Cc-eECCCCCEEEEEEcCCCccc
Confidence 44321 1122358999987655 77 35599999999887643 22 22221 11 23333444 4444332
Q ss_pred ---CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEEee
Q 019091 255 ---TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINLRE 321 (346)
Q Consensus 255 ---sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l~~ 321 (346)
...|.++|+++|+.. .+ ..-. . -+..+|+|+|+.++.+....+ .|+.+.+..
T Consensus 345 ~~~~~~I~v~d~~~g~~~-~L--T~~~--------~----~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIR-RL--TANG--------V----NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCcEEEEEECCCCCeE-EC--CCCC--------C----cCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 148999999999752 22 1100 0 012679999998766544332 377777743
No 47
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.46 E-value=1.2e-05 Score=77.64 Aligned_cols=190 Identities=16% Similarity=0.176 Sum_probs=125.3
Q ss_pred EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEEeCCEEEEEEeeCCEEE
Q 019091 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~~g~~LY~ltw~~~~v~ 173 (346)
..+||.++..-+.-++.++||.+|.+.. +...|-..|++||++ .+++++ ..+||.-+..++ -.|+++... -|.
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWft~q--g~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~ 127 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQ--GTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDG-SAWITDTGL-AIG 127 (353)
T ss_pred cceeccCCCCCccccccCCCCceEEecC--ccccceecCCCCCce-EEEecCCCCCCceEEECCCC-CeeEecCcc-eeE
Confidence 3567877666666888889998877755 667999999999987 455664 566665444444 377776544 777
Q ss_pred EEECCCCcE-------------------------------------------EEEEecC---CCceeEEeeCCCEEEEEC
Q 019091 174 IYDQNNLNK-------------------------------------------LEEFTHQ---MKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 174 V~D~~tl~~-------------------------------------------i~ti~~~---~peGwGLt~Dg~~LyvSd 207 (346)
.+|++|+++ ++.|+.+ .|+|.-.++||..-|.|-
T Consensus 128 R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasl 207 (353)
T COG4257 128 RLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASL 207 (353)
T ss_pred EecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEec
Confidence 788877754 3344442 467777888888777777
Q ss_pred CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhcc
Q 019091 208 GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAG 285 (346)
Q Consensus 208 Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~ 285 (346)
-.|.|.-|||.+..- ..++.-+. ..+-..=-+. -|++|++-|....+.+.||.+-. =..+.+++..+
T Consensus 208 agnaiaridp~~~~a-ev~p~P~~---~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~a------ 276 (353)
T COG4257 208 AGNAIARIDPFAGHA-EVVPQPNA---LKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKA------ 276 (353)
T ss_pred cccceEEcccccCCc-ceecCCCc---ccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCC------
Confidence 889999999988722 12222111 0000000122 37999999999999999999887 33444544331
Q ss_pred CCCCceeeEEEEeCCCCEEEEe
Q 019091 286 YNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 286 ~~~~~vlNGIA~d~~~~~LfVT 307 (346)
-++-+-.| +.+|+|..
T Consensus 277 -----rpys~rVD-~~grVW~s 292 (353)
T COG4257 277 -----RPYSMRVD-RHGRVWLS 292 (353)
T ss_pred -----Ccceeeec-cCCcEEee
Confidence 34556676 55677775
No 48
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=5.3e-05 Score=76.50 Aligned_cols=192 Identities=12% Similarity=0.060 Sum_probs=113.4
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEE
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ 184 (346)
....++||| +|+.++...+...|.++|+++|+.......+.....-..+++|++|+.+...+ ..++++|.++.+ ..
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~ 277 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR 277 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE
Confidence 467888998 45444333456789999999998755444554444455667788887654333 468999987654 33
Q ss_pred EEecC--CCceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE-EEecC-CCe
Q 019091 185 EFTHQ--MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW-ANVWQ-TDC 257 (346)
Q Consensus 185 ti~~~--~peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly-aNv~~-sn~ 257 (346)
++... ....-..++||++|+ +|| |..+|+.+|..+.+.. ++... |.....+ .+...+.+|+ ++... ...
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~--g~~~~~~-~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT--GSYNTSP-RISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC--CCCcCce-EECCCCCEEEEEEccCCcEE
Confidence 34321 112235789999865 676 4678999998776543 33321 1110000 1222333554 44332 236
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEE
Q 019091 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINL 319 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l 319 (346)
|.++|..+|+.. .+.- . . .-...+|+|+++.|+.+...- ..+|.+.+
T Consensus 354 I~v~d~~~g~~~-~lt~-~-~------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 354 LYVQDLATGQVT-ALTD-T-T------------RDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEEECCCCCeE-EccC-C-C------------CccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 999999999854 2211 1 0 013468999999988776433 34666655
No 49
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.39 E-value=6.5e-05 Score=78.47 Aligned_cols=202 Identities=16% Similarity=0.122 Sum_probs=131.3
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe----eEEEEEEeCCEEEEEEee-----CCEEEEEECC
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----FGEGLTLLGEKLFQVTWL-----QKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~----FgeGit~~g~~LY~ltw~-----~~~v~V~D~~ 178 (346)
.|+++. ++++|+++. +..|..+|.+|||++=+..+.... +.-.-.+.+++||+.... ++.+..+|++
T Consensus 114 rg~av~-~~~v~v~t~---dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~ 189 (527)
T TIGR03075 114 RGVALY-DGKVFFGTL---DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAK 189 (527)
T ss_pred ccceEE-CCEEEEEcC---CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECC
Confidence 577776 579999875 358999999999998777653211 111223467899998642 5789999999
Q ss_pred CCcEEEEEecCCC-------------------------------ceeE-EeeC--CCEEEEEC-------C---------
Q 019091 179 NLNKLEEFTHQMK-------------------------------DGWG-LATD--GKVLFGSD-------G--------- 208 (346)
Q Consensus 179 tl~~i~ti~~~~p-------------------------------eGwG-Lt~D--g~~LyvSd-------G--------- 208 (346)
|++++-++....+ .-|+ ++.| .+.+|+.- +
T Consensus 190 TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~ 269 (527)
T TIGR03075 190 TGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLY 269 (527)
T ss_pred CCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcc
Confidence 9999998765201 1132 2444 66888832 3
Q ss_pred CCeEEEEeCCCCcEEEEEEecc-C-------CeeeeeceeeEe-eCCE---EEEEecCCCeEEEEeCCCCeEEEE-----
Q 019091 209 SSMLYQIDPQTLKVIRKDIVRY-K-------GREVRNLNELEF-IKGE---VWANVWQTDCIARISHEDGVVLGW----- 271 (346)
Q Consensus 209 s~~l~vIDp~T~kvi~~I~V~~-~-------G~pv~~lNELE~-~~G~---LyaNv~~sn~I~vID~~TG~Vv~~----- 271 (346)
++.|.-+|++|+|++=..+... + ..| .| ++. .||+ +.+-.-.+..+.++|.+||+.+..
T Consensus 270 ~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p--~l--~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~ 345 (527)
T TIGR03075 270 TSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM--IL--FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVD 345 (527)
T ss_pred ceeEEEEccccCCEEEeeeCCCCCCccccCCCCc--EE--EEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccC
Confidence 4589999999999974444421 1 112 12 232 3554 777776788999999999998622
Q ss_pred -------EECCchhhhh-hh---------------ccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019091 272 -------VLLPNLRERL-VA---------------AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 272 -------I~l~~l~~~~-~~---------------~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
++....++.. .+ .+...+.-..++||||+++.+||--.+++..+.-
T Consensus 346 ~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~ 414 (527)
T TIGR03075 346 TVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEP 414 (527)
T ss_pred CcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccc
Confidence 1111101100 00 0112234567899999999999999998877663
No 50
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=0.00017 Score=72.83 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=110.4
Q ss_pred ceeEEEecCCE-E-EEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcE
Q 019091 107 TQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNK 182 (346)
Q Consensus 107 TqGL~~~~d~~-L-yeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~ 182 (346)
.....++|||+ | |.+.+ .+...|.++|+.+|+......++.....-..+++|++|+.+...++ .++++|.++.+.
T Consensus 206 v~~p~wSPDG~~la~~s~~-~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFE-NKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred cccceEcCCCCEEEEEEec-CCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence 35788999984 4 44433 3557899999999975444444433333446667888887655544 478889877654
Q ss_pred EEEEecC--CCceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCe
Q 019091 183 LEEFTHQ--MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDC 257 (346)
Q Consensus 183 i~ti~~~--~peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~ 257 (346)
.++..+ ......+++||++|+ ++| |.-+|+.+|..+.... .+ +..+ ..+ .+...+.+|++.. .+.
T Consensus 285 -~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l--~~~~---~~~-~~SpDG~~ia~~~--~~~ 354 (429)
T PRK01742 285 -SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-LV--GGRG---YSA-QISADGKTLVMIN--GDN 354 (429)
T ss_pred -EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee--cCCC---CCc-cCCCCCCEEEEEc--CCC
Confidence 334322 123456789999765 576 4668999998766542 22 2222 111 1222334565443 367
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|.++|..+|+..... - ... -...+|+|+++.++.+.. -.....+.+
T Consensus 355 i~~~Dl~~g~~~~lt-~-~~~-------------~~~~~~sPdG~~i~~~s~-~g~~~~l~~ 400 (429)
T PRK01742 355 VVKQDLTSGSTEVLS-S-TFL-------------DESPSISPNGIMIIYSST-QGLGKVLQL 400 (429)
T ss_pred EEEEECCCCCeEEec-C-CCC-------------CCCceECCCCCEEEEEEc-CCCceEEEE
Confidence 888999999864221 1 110 023679999998877653 233344444
No 51
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=0.00032 Score=74.06 Aligned_cols=249 Identities=15% Similarity=0.121 Sum_probs=146.5
Q ss_pred ccccceeeeccCCchhhHHHHHHHhheeccccccccccCCCCCCCCceeee----EEEEEEecCCCCcceeEEEecCCEE
Q 019091 43 NHFSRFRHYNKGIPAVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTI----QVVNEFPHDPRAFTQGLLYAENDTL 118 (346)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~----~Vv~t~phd~~~FTqGL~~~~d~~L 118 (346)
-||-||..|-- ..+++++........+.......+++|.+ =....++.+..--++||++.+.++|
T Consensus 15 vhrcrf~d~~P-----------s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RL 83 (691)
T KOG2048|consen 15 VHRCRFVDYKP-----------SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRL 83 (691)
T ss_pred EEEEEEEeeec-----------cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeE
Confidence 46777776652 34455544333333222222333333322 2334455556666799999987899
Q ss_pred EEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEe
Q 019091 119 FESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA 197 (346)
Q Consensus 119 yeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt 197 (346)
|-+ |+ +.+|..||+.++|.+..+. .+...+...+.+.++.+-+. -.++.++.++....++.-........|-.|+
T Consensus 84 FS~-g~--sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig-cddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 84 FSS-GL--SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG-CDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred Eee-cC--CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee-cCCceEEEEecCCceEEEEeecccccceEEE
Confidence 955 63 4499999999999888886 46677777666666666655 2355777888777777666555422355543
Q ss_pred ----eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe-----eCCEEEEEecCCCeEEEEeCCCCeE
Q 019091 198 ----TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-----IKGEVWANVWQTDCIARISHEDGVV 268 (346)
Q Consensus 198 ----~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~-----~~G~LyaNv~~sn~I~vID~~TG~V 268 (346)
+++.+++.--.+..|.++|..+......+..+.++-.-. -+-+-| -++.|-... -+..|..=|+++|..
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~tI~sgD-S~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR-EPTIVWSVLFLRDSTIASGD-SAGTVTFWDSIFGTL 237 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC-CceEEEEEEEeecCcEEEec-CCceEEEEcccCcch
Confidence 456667664445679999999988877555543211000 000111 022222222 133333334444433
Q ss_pred EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019091 269 LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 269 v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
+..... -..+|+ .+|.+++++++|++| -.|++++.++..-
T Consensus 238 iqS~~~------------h~adVl-~Lav~~~~d~vfsaG-vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 238 IQSHSC------------HDADVL-ALAVADNEDRVFSAG-VDPKIIQYSLTTN 277 (691)
T ss_pred hhhhhh------------hhccee-EEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence 332211 123454 699999999999987 5799999998764
No 52
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.29 E-value=8.8e-05 Score=76.44 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=109.0
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-------eeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcE
Q 019091 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-------YFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 111 ~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-------~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
.+. ++++|+++. +..|..+|++||+++=+.++... .+..|+++.+ +++|+.+. ++.++.+|++|+++
T Consensus 58 vv~-~g~vy~~~~---~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~g~v~AlD~~TG~~ 132 (488)
T cd00216 58 LVV-DGDMYFTTS---HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-DGRLVALDAETGKQ 132 (488)
T ss_pred EEE-CCEEEEeCC---CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-CCeEEEEECCCCCE
Confidence 444 689999875 35999999999998877765432 2445667777 99999886 58999999999999
Q ss_pred EEEEecCCC--ceeEE----eeCCCEEEEECC---------CCeEEEEeCCCCcEEEEEEeccC-C--------------
Q 019091 183 LEEFTHQMK--DGWGL----ATDGKVLFGSDG---------SSMLYQIDPQTLKVIRKDIVRYK-G-------------- 232 (346)
Q Consensus 183 i~ti~~~~p--eGwGL----t~Dg~~LyvSdG---------s~~l~vIDp~T~kvi~~I~V~~~-G-------------- 232 (346)
+-++....+ .++.+ +-+++.+|+... +..|+-+|++|++++=+...... .
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 999987522 23332 224577877431 46899999999998866655321 0
Q ss_pred ---eeeeeceeeEeeCCEEEEEecC-----------------CCeEEEEeCCCCeEEEEEEC
Q 019091 233 ---REVRNLNELEFIKGEVWANVWQ-----------------TDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 233 ---~pv~~lNELE~~~G~LyaNv~~-----------------sn~I~vID~~TG~Vv~~I~l 274 (346)
-.+...=-++..+|.||+..-. ++.|+.+|.+||+++=...+
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 0000000112235789987522 34899999999999866644
No 53
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.29 E-value=5e-05 Score=75.33 Aligned_cols=192 Identities=15% Similarity=0.146 Sum_probs=123.4
Q ss_pred CEEEEEcC--CCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-Eee--------CCEEEEEECCCCcEEE
Q 019091 116 DTLFESTG--LYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-TWL--------QKTGFIYDQNNLNKLE 184 (346)
Q Consensus 116 ~~LyeStG--lyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-tw~--------~~~v~V~D~~tl~~i~ 184 (346)
+++|+... ....+++.++|.+++|++..++.+-.. ...++.+++++|++ |+. ...|.+||++||+..+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~ 81 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG 81 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeecccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence 35665432 112369999999999999999765321 12256678999986 444 4679999999999999
Q ss_pred EEecCC---------CceeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec
Q 019091 185 EFTHQM---------KDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 185 ti~~~~---------peGwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~ 253 (346)
+|..+. +.-.+|+.||+++||.| . +..|.|+|.+..++++.|.+. |.-.- .-..+...+.-|
T Consensus 82 EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i----yP~~~~~F~~lC- 154 (342)
T PF06433_consen 82 EIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI----YPSGNRGFSMLC- 154 (342)
T ss_dssp EEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE----EEEETTEEEEEE-
T ss_pred eEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE----EecCCCceEEEe-
Confidence 887541 22245889999999999 3 889999999999999999982 23211 112244544455
Q ss_pred CCCeEEEEeCC-CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC-EEEEecCCCCcEEEEEEeecccc
Q 019091 254 QTDCIARISHE-DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 254 ~sn~I~vID~~-TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTGK~Wp~l~ev~l~~~~~~ 325 (346)
.+..+..|..+ .|++..+- . .+.. . ......+-=||+..++ .+|+| +-+.||.++|......
T Consensus 155 ~DGsl~~v~Ld~~Gk~~~~~-t-~~F~--~----~~dp~f~~~~~~~~~~~~~F~S--y~G~v~~~dlsg~~~~ 218 (342)
T PF06433_consen 155 GDGSLLTVTLDADGKEAQKS-T-KVFD--P----DDDPLFEHPAYSRDGGRLYFVS--YEGNVYSADLSGDSAK 218 (342)
T ss_dssp TTSCEEEEEETSTSSEEEEE-E-EESS--T----TTS-B-S--EEETTTTEEEEEB--TTSEEEEEEETTSSEE
T ss_pred cCCceEEEEECCCCCEeEee-c-cccC--C----CCcccccccceECCCCeEEEEe--cCCEEEEEeccCCccc
Confidence 46666666666 67776332 1 1110 0 1122444456665554 55688 8899999998644333
No 54
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.27 E-value=0.00021 Score=70.51 Aligned_cols=183 Identities=14% Similarity=0.163 Sum_probs=110.6
Q ss_pred EEEEEc-CCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEecC-CCc
Q 019091 117 TLFEST-GLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQ-MKD 192 (346)
Q Consensus 117 ~LyeSt-Glyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~~-~pe 192 (346)
.+|++. |..+...|.+.|.+.++...-...+...+.-..+++|++|+.+.+.+ ..++++|.++.+........ ...
T Consensus 158 ~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~ 237 (417)
T TIGR02800 158 IAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG 237 (417)
T ss_pred EEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc
Confidence 355553 22356789999987665433333333344445677888887776654 67999999887654332222 234
Q ss_pred eeEEeeCCCEEEEE-C--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEE-EEec-CCCeEEEEeCCC
Q 019091 193 GWGLATDGKVLFGS-D--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVW-QTDCIARISHED 265 (346)
Q Consensus 193 GwGLt~Dg~~LyvS-d--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-aNv~-~sn~I~vID~~T 265 (346)
...+++||+.|+++ + +...|+.+|..+.+.. .+.... +.. .+..+. || +|+ +... ....|.++|.++
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~-~~~----~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP-GID----TEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC-CCC----CCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 45689999988764 3 4568999999887653 232211 111 011222 44 554 4432 234799999999
Q ss_pred CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019091 266 GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 266 G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
+++. .+... ......++|+|+++.++.+....+ .||.+++
T Consensus 312 ~~~~-~l~~~-------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 312 GEVR-RLTFR-------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCEE-EeecC-------------CCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 8853 33221 112345789999999999887654 5666655
No 55
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.00012 Score=74.65 Aligned_cols=172 Identities=14% Similarity=0.116 Sum_probs=102.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEE--EEEecCCCceeEEeeCCCE
Q 019091 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKL--EEFTHQMKDGWGLATDGKV 202 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i--~ti~~~~peGwGLt~Dg~~ 202 (346)
..+|.+.|.+..+.......+.....-..+++|++|+.+.+.+ ..++++|..+++.. ..++. ......++|||++
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~~ 275 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG-INGAPRFSPDGKK 275 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC-CcCCeeECCCCCE
Confidence 3578888987765432222332223334667888876665443 46999999887642 22221 2234568999998
Q ss_pred EEEE---CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEec--CCCeEEEEeCCCCeEEEEEECC
Q 019091 203 LFGS---DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVW--QTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 203 LyvS---dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~--~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
|+++ +|...|+++|.++.++. ++.-.. +. ..+..+. || +|+.+.. ....|.++|.++|++.. +...
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~-~~----~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~ 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALT-RITRHR-AI----DTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeE-ECccCC-CC----ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC
Confidence 8663 35668999999987753 232221 11 1123333 44 5654332 34679999999998643 3221
Q ss_pred chhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019091 276 NLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 276 ~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
. ....+.+|+|+++.++.++..-+ .||.+.+
T Consensus 349 g-------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 349 G-------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred C-------------CCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 1 01124689999999988876543 5666665
No 56
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.22 E-value=0.00026 Score=69.00 Aligned_cols=210 Identities=16% Similarity=0.231 Sum_probs=127.6
Q ss_pred eeeeEEEEE-EecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-E
Q 019091 90 IYTIQVVNE-FPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-T 166 (346)
Q Consensus 90 ~~t~~Vv~t-~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-t 166 (346)
.|...+.+. +- +-..=+-+|+|+|+. +||..++ ....|..+++. |+++++++++.-.=+|+|...++-.|++ +
T Consensus 71 ~y~~~i~akpi~-g~~~nvS~LTynp~~rtLFav~n--~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~fvi~d 146 (316)
T COG3204 71 EYRARIDAKPIL-GETANVSSLTYNPDTRTLFAVTN--KPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQFVIVD 146 (316)
T ss_pred CceEEEeccccc-cccccccceeeCCCcceEEEecC--CCceEEEEecC-CceEEEecccccCChhHeEEecCCEEEEEe
Confidence 345555554 21 122225799999876 6888877 55678777664 9999999997644479999998777766 6
Q ss_pred eeCCEEEEE--ECCCCcEE-E--EEecC-------CCceeEEeeCCCEEEEECCCC--eEEEEe--CCCCcEEEEE-Eec
Q 019091 167 WLQKTGFIY--DQNNLNKL-E--EFTHQ-------MKDGWGLATDGKVLFGSDGSS--MLYQID--PQTLKVIRKD-IVR 229 (346)
Q Consensus 167 w~~~~v~V~--D~~tl~~i-~--ti~~~-------~peGwGLt~Dg~~LyvSdGs~--~l~vID--p~T~kvi~~I-~V~ 229 (346)
.+.+.++++ |++|.... + .|+.+ .=||.+-.+.+++||++-.-+ .|+.++ +..+.+.... +..
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence 788887774 55533221 1 33332 127777777789999986533 666665 2222221110 000
Q ss_pred cCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 230 YKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 230 ~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+.+--+..+.-|+|. ++.|+|=.-.+..++.+|. +|++++.+.+..-...|. .+.-.+.|||.|++ +.|||+
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~----~dipqaEGiamDd~-g~lYIv 300 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLS----SDIPQAEGIAMDDD-GNLYIV 300 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCc----ccCCCcceeEECCC-CCEEEE
Confidence 111122233346666 6778886666777888875 577788886632111111 22336799999965 568888
Q ss_pred cC
Q 019091 308 GK 309 (346)
Q Consensus 308 GK 309 (346)
..
T Consensus 301 SE 302 (316)
T COG3204 301 SE 302 (316)
T ss_pred ec
Confidence 54
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0003 Score=68.55 Aligned_cols=175 Identities=16% Similarity=0.146 Sum_probs=125.1
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCC
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQK 170 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~ 170 (346)
+=+-|+.++- .+.-...|..+|-+..|.|+++ +.+|+.||+++-+-...+.+..++- ++.+. +.++++.-.++
T Consensus 89 dNkylRYF~G-H~~~V~sL~~sP~~d~FlS~S~--D~tvrLWDlR~~~cqg~l~~~~~pi---~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 89 DNKYLRYFPG-HKKRVNSLSVSPKDDTFLSSSL--DKTVRLWDLRVKKCQGLLNLSGRPI---AAFDPEGLIFALANGSE 162 (311)
T ss_pred cCceEEEcCC-CCceEEEEEecCCCCeEEeccc--CCeEEeeEecCCCCceEEecCCCcc---eeECCCCcEEEEecCCC
Confidence 3355666662 2333478999998889999884 4599999999887777777766552 25554 55666666667
Q ss_pred EEEEEECCCC--cEEEEEecC--CC---ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe
Q 019091 171 TGFIYDQNNL--NKLEEFTHQ--MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 171 ~v~V~D~~tl--~~i~ti~~~--~p---eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
.|.+||.+.+ ....+|.++ .. .+..+++|||.+.+|...+.++++|+=+++++.+.....++..+. -+..+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~--~~a~f 240 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP--LSATF 240 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc--eeEEE
Confidence 9999999865 455566553 11 344589999999999999999999999999999888865433222 12223
Q ss_pred -eCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 244 -IKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 244 -~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
.|++-......+.+|.+=+.+||+.++...-
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 2665444555678899999999999888854
No 58
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.20 E-value=0.00024 Score=68.86 Aligned_cols=192 Identities=14% Similarity=0.130 Sum_probs=113.6
Q ss_pred eeEEEecCCEEEEE-cCC---------CCCCeEEEEECCCCcEEEEeccCCC-----eeEEEEEEeC-------CEEEEE
Q 019091 108 QGLLYAENDTLFES-TGL---------YGRSSVRRVALETGKVEAINQMEGS-----YFGEGLTLLG-------EKLFQV 165 (346)
Q Consensus 108 qGL~~~~d~~LyeS-tGl---------yg~s~V~~iDl~Tgkv~~~~~l~~~-----~FgeGit~~g-------~~LY~l 165 (346)
+++.++..|+||+= +|. .+.-+|..||+.|+++++++.+++. -|-.-+.++. ..+|++
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt 83 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT 83 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe
Confidence 78999999999975 443 3446999999999999999988743 3445566665 589999
Q ss_pred EeeCCEEEEEECCCCcEEEEEe--------------------cC-CCceeEEee---CCCEEEEEC-CCCeEEEEeCCCC
Q 019091 166 TWLQKTGFIYDQNNLNKLEEFT--------------------HQ-MKDGWGLAT---DGKVLFGSD-GSSMLYQIDPQTL 220 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~--------------------~~-~peGwGLt~---Dg~~LyvSd-Gs~~l~vIDp~T~ 220 (346)
+-...-+.|||.++.+--+-.. .. .-.|.++++ ||++||-.= .+..+|-|.++-+
T Consensus 84 D~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L 163 (287)
T PF03022_consen 84 DSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVL 163 (287)
T ss_dssp ETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHH
T ss_pred CCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHh
Confidence 9999999999999875533221 00 123445554 788998854 6778988875332
Q ss_pred c---EEE------E-EEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeE---EEEEECCchhhhhhhccC
Q 019091 221 K---VIR------K-DIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVV---LGWVLLPNLRERLVAAGY 286 (346)
Q Consensus 221 k---vi~------~-I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~V---v~~I~l~~l~~~~~~~~~ 286 (346)
+ ... . ..++..| .+..-+.++ +|.||.+....+.|...|+.+--. ...+-- + .
T Consensus 164 ~~~~~~~~~~~~~~v~~lG~k~---~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~-d---------~ 230 (287)
T PF03022_consen 164 RDPSLSDAQALASQVQDLGDKG---SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ-D---------P 230 (287)
T ss_dssp CSTT--HHH-HHHT-EEEEE------SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-----------C
T ss_pred hCccccccccccccceeccccC---CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE-c---------C
Confidence 1 111 1 1223322 111224444 689999999999999999997211 122211 0 0
Q ss_pred CCCceeeEEEEeC--CCCEEEEecCCCC
Q 019091 287 NGIDVLNGIAWDS--NRNRIFVTGKLWP 312 (346)
Q Consensus 287 ~~~~vlNGIA~d~--~~~~LfVTGK~Wp 312 (346)
.....|.|+++++ ++...+++++...
T Consensus 231 ~~l~~pd~~~i~~~~~g~L~v~snrl~~ 258 (287)
T PF03022_consen 231 RTLQWPDGLKIDPEGDGYLWVLSNRLQR 258 (287)
T ss_dssp C-GSSEEEEEE-T--TS-EEEEE-S--S
T ss_pred ceeeccceeeeccccCceEEEEECcchH
Confidence 1144789999998 5544445554443
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.18 E-value=0.0017 Score=70.58 Aligned_cols=213 Identities=12% Similarity=0.056 Sum_probs=125.7
Q ss_pred EEEEEEe-cCCCCcceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019091 94 QVVNEFP-HDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
+.+.++. |. ....++.|++ ++.++.+++ .+..|++||+.+++.+..+..........+...++..+++.-.++.
T Consensus 566 ~~~~~~~~H~--~~V~~l~~~p~~~~~L~Sgs--~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~ 641 (793)
T PLN00181 566 QLVTEMKEHE--KRVWSIDYSSADPTLLASGS--DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHK 641 (793)
T ss_pred eEEEEecCCC--CCEEEEEEcCCCCCEEEEEc--CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCe
Confidence 3445553 43 3346999985 667888877 5669999999999888777654433332222233455556667899
Q ss_pred EEEEECCCCc-EEEEEecCCCceeEEe-eCCCEEEEECCCCeEEEEeCCCC------cEEEEEEeccCCeeeeeceeeEe
Q 019091 172 GFIYDQNNLN-KLEEFTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTL------KVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 172 v~V~D~~tl~-~i~ti~~~~peGwGLt-~Dg~~LyvSdGs~~l~vIDp~T~------kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
+.++|..+.+ .+.++......-+.+. .|++.|+.+..+++|.++|..+. +.+.++.-.. . ..+.+.+
T Consensus 642 I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~---~i~~v~~ 716 (793)
T PLN00181 642 VYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--N---VKNFVGL 716 (793)
T ss_pred EEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--C---CeeEEEE
Confidence 9999998765 3444432111112232 37788877777889999998643 2333332211 1 1223333
Q ss_pred e-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019091 244 I-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 244 ~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
. +|.+.|..-.++.|.+.|..+...+....+..................+.++|+++++.|+.++ .-+.|.-
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~-~dG~I~i 789 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN-STGNIKI 789 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec-CCCcEEE
Confidence 3 4555555556889999999888766655442211110000011234678999999988766554 4454443
No 60
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.17 E-value=6.3e-05 Score=78.58 Aligned_cols=154 Identities=13% Similarity=0.066 Sum_probs=105.7
Q ss_pred EEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCce-----------eEEeeCCCEEEEECCCCeEEEEeCCCCcEEE
Q 019091 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDG-----------WGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 156 t~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peG-----------wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
.+.+++||+.+.. +.++.+|++|++++-++....+.+ -+++..++++|+++.++.|+-+|++|++++=
T Consensus 66 vv~~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 66 LVVDGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred EEECCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 4578999998875 579999999999999987642211 1234457899999888999999999999987
Q ss_pred EEEeccCCeeeeeceeeEeeCCEEEEEecC-----CCeEEEEeCCCCeEEEEEECCchhhh---------hhhc------
Q 019091 225 KDIVRYKGREVRNLNELEFIKGEVWANVWQ-----TDCIARISHEDGVVLGWVLLPNLRER---------LVAA------ 284 (346)
Q Consensus 225 ~I~V~~~G~pv~~lNELE~~~G~LyaNv~~-----sn~I~vID~~TG~Vv~~I~l~~l~~~---------~~~~------ 284 (346)
+..+.+..........-.+.+|.||+.... ...|..+|.+||+++=..+.-.-.+. ..+.
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 766643211111111122458899987642 46899999999999876655221100 0000
Q ss_pred ----cCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 285 ----GYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 285 ----~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
..-..++.+.++|||+.+.+|+.=.+
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGn 254 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGN 254 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCC
Confidence 01235788899999999999986555
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.17 E-value=0.00035 Score=67.35 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=136.5
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe----e
Q 019091 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW----L 168 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw----~ 168 (346)
+.+.+|. |...-| -+.++.+.+..++.. .+.++..||..|||+++..+.+...-...+...|+.+.+.+- +
T Consensus 43 erlGty~GHtGavW--~~Did~~s~~liTGS--AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 43 ERLGTYDGHTGAVW--CCDIDWDSKHLITGS--ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGY 118 (327)
T ss_pred ceeeeecCCCceEE--EEEecCCcceeeecc--ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCc
Confidence 5677775 544444 566665555555543 678999999999999999999887767777777877666553 3
Q ss_pred CCEEEEEECCC-------CcEEEEEecC----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE-EEEEEeccCCeeee
Q 019091 169 QKTGFIYDQNN-------LNKLEEFTHQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVR 236 (346)
Q Consensus 169 ~~~v~V~D~~t-------l~~i~ti~~~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv-i~~I~V~~~G~pv~ 236 (346)
...|.+||... -+.+-.|+.+ ...+|| +-++.|+.-..+..|..+|..++++ +....+.. .
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg--~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~--~--- 191 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG--PLGETIIAGHEDGSISIYDARTGKELVDSDEEHS--S--- 191 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeec--ccCCEEEEecCCCcEEEEEcccCceeeechhhhc--c---
Confidence 67899999873 3345555543 124444 5589998888899999999999754 44444422 2
Q ss_pred eceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 237 NLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 237 ~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
.+|.|.+. |+.-|++--.+.+--.+|..|.+|+.++-. + ..+|..|++|-.+.+...|.+
T Consensus 192 ~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e-------------~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 192 KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-E-------------RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ccccccccCCcceEEecccCccceeeeccceeeEEEeee-c-------------ccccceecccccceEEecCCc
Confidence 56777665 567888888788888999999999999955 1 146889999977655554443
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.0002 Score=73.14 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=123.7
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCE
Q 019091 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~ 171 (346)
..++++. +...+...+.|++++++++|.+ ++..|++||..+|+.+..+..... ..-+++. +++.|+.+ -.++.
T Consensus 237 ~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~-s~d~~ 311 (456)
T KOG0266|consen 237 RNLKTLK-GHSTYVTSVAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSA-SYDGT 311 (456)
T ss_pred eEEEEec-CCCCceEEEEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEc-CCCcc
Confidence 4556663 3455667999999999999988 678999999999999998876543 2334444 44556666 44999
Q ss_pred EEEEECCCCc--EEEEEecC-CC---ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC-eeeeeceeeEee
Q 019091 172 GFIYDQNNLN--KLEEFTHQ-MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG-REVRNLNELEFI 244 (346)
Q Consensus 172 v~V~D~~tl~--~i~ti~~~-~p---eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G-~pv~~lNELE~~ 244 (346)
+.++|..+++ .++++.-. .+ .=.-++++++.+++.-.++.+..+|....+..+.......+ ..+.. + .-..
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 389 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS-P-TLST 389 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEec-c-cccC
Confidence 9999999999 45665432 22 11236789999999888899999999999888777665443 11110 0 1133
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 245 KGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
+|+..+.......|.+-|+.++..+..+..
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~ 419 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGILQRLEG 419 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchhhhhcC
Confidence 566555555688999999999988877754
No 63
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.14 E-value=0.00036 Score=67.73 Aligned_cols=204 Identities=15% Similarity=0.198 Sum_probs=139.1
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-cc---------------------------
Q 019091 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QM--------------------------- 146 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l--------------------------- 146 (346)
-+++||.+..+-..|+.+.+||.+|++.+ +. .|.++|.+|+++.+-. +.
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~y 170 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDT--GL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAY 170 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecC--cc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccc
Confidence 46788887666667999999999998865 44 8999999988764432 11
Q ss_pred -----------------CCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCce-----eEEeeC-CCE
Q 019091 147 -----------------EGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDG-----WGLATD-GKV 202 (346)
Q Consensus 147 -----------------~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peG-----wGLt~D-g~~ 202 (346)
+..+. ||+.. ++.+|.+....+-+..+|+.+. .-..++. |++ -.+..| ..+
T Consensus 171 GrLdPa~~~i~vfpaPqG~gpy--Gi~atpdGsvwyaslagnaiaridp~~~-~aev~p~--P~~~~~gsRriwsdpig~ 245 (353)
T COG4257 171 GRLDPARNVISVFPAPQGGGPY--GICATPDGSVWYASLAGNAIARIDPFAG-HAEVVPQ--PNALKAGSRRIWSDPIGR 245 (353)
T ss_pred eecCcccCceeeeccCCCCCCc--ceEECCCCcEEEEeccccceEEcccccC-CcceecC--CCcccccccccccCccCc
Confidence 01122 33332 3679999999999999999888 3334443 333 123334 468
Q ss_pred EEEEC-CCCeEEEEeCCCCcEEEEEEec-cCCeeeeeceeeEeeC-CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhh
Q 019091 203 LFGSD-GSSMLYQIDPQTLKVIRKDIVR-YKGREVRNLNELEFIK-GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRE 279 (346)
Q Consensus 203 LyvSd-Gs~~l~vIDp~T~kvi~~I~V~-~~G~pv~~lNELE~~~-G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~ 279 (346)
+|+|+ +..+++-+||.+..-+ ..+.- .+.+|-. |-.++ |++|-.-|.++.|.+.||+|-+.. .+.. + +
T Consensus 246 ~wittwg~g~l~rfdPs~~sW~-eypLPgs~arpys----~rVD~~grVW~sea~agai~rfdpeta~ft-v~p~-p-r- 316 (353)
T COG4257 246 AWITTWGTGSLHRFDPSVTSWI-EYPLPGSKARPYS----MRVDRHGRVWLSEADAGAIGRFDPETARFT-VLPI-P-R- 316 (353)
T ss_pred EEEeccCCceeeEeCcccccce-eeeCCCCCCCcce----eeeccCCcEEeeccccCceeecCcccceEE-EecC-C-C-
Confidence 99998 7999999999986633 34442 2233322 43333 799999999999999999998753 2222 1 1
Q ss_pred hhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecccc
Q 019091 280 RLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 280 ~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~ 325 (346)
+ ..+-|+.++..+.+|.|-..=+.+...|..+++++
T Consensus 317 -------~---n~gn~ql~gr~ge~W~~e~gvd~lv~~r~~~~~~~ 352 (353)
T COG4257 317 -------P---NSGNIQLDGRPGELWFTEAGVDALVTTRIGYLDTR 352 (353)
T ss_pred -------C---CCCceeccCCCCceeecccCcceeEEEEeeecccC
Confidence 0 12347888989999999887777777777666543
No 64
>PTZ00420 coronin; Provisional
Probab=98.11 E-value=0.00062 Score=72.00 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=129.2
Q ss_pred cceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019091 106 FTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
....+.|+|++. ++.+++ .+..|++||+.+++....+..+..........+|. +++++-.++.+.++|+.+++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEE
Confidence 347899999875 556766 45699999999998777766555444433333444 55667788999999999999998
Q ss_pred EEecC-CC-ce---e--EEeeCCCEEEEE--CC--CCeEEEEeCCC-CcEEEEEEeccCCeeeeeceeeEeeCCEEEEEe
Q 019091 185 EFTHQ-MK-DG---W--GLATDGKVLFGS--DG--SSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (346)
Q Consensus 185 ti~~~-~p-eG---w--GLt~Dg~~LyvS--dG--s~~l~vIDp~T-~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv 252 (346)
++... .. .. | ++++|++++..+ |+ ..+|.++|..+ .+.+..+.......++. .-....+|.+|+.-
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~--p~~D~~tg~l~lsG 281 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI--PHYDESTGLIYLIG 281 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE--EeeeCCCCCEEEEE
Confidence 88642 11 01 2 234788887763 32 24899999985 45565555543211211 01223368899888
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC---------EEEEecCCCCcEEEEEE-eec
Q 019091 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN---------RIFVTGKLWPKLYEINL-REM 322 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~---------~LfVTGK~Wp~l~ev~l-~~~ 322 (346)
-.++.|.+-|..++.+ ..+.- +.......|++|-|++. |+|-... -..|.-|.+ +|+
T Consensus 282 kGD~tIr~~e~~~~~~-~~l~~-----------~~s~~p~~g~~f~Pkr~~dv~~cEi~R~~kl~~-~~~i~pisf~vPR 348 (568)
T PTZ00420 282 KGDGNCRYYQHSLGSI-RKVNE-----------YKSCSPFRSFGFLPKQICDVYKCEIGRVYKNEN-NSSIRPISFYVPR 348 (568)
T ss_pred ECCCeEEEEEccCCcE-Eeecc-----------cccCCCccceEEccccccCchhhhHhHHhhhcC-CCeEEEEEEEecc
Confidence 7888899999888753 33321 11223457899999876 6664321 135777776 576
Q ss_pred cc
Q 019091 323 KR 324 (346)
Q Consensus 323 ~~ 324 (346)
++
T Consensus 349 k~ 350 (568)
T PTZ00420 349 KN 350 (568)
T ss_pred CC
Confidence 63
No 65
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.06 E-value=6.4e-05 Score=71.66 Aligned_cols=116 Identities=22% Similarity=0.341 Sum_probs=73.6
Q ss_pred ceeEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEecCCCeEEEEeCCC--Ce
Q 019091 192 DGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQTDCIARISHED--GV 267 (346)
Q Consensus 192 eGwGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~~sn~I~vID~~T--G~ 267 (346)
.|....+|+++||+ +|....|+.+|. +++++++|++...|- ...++|.++ ...+.-...+.+.+++..+ ..
T Consensus 25 SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D----~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGD----YEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SS----EEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCC----ceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 44445567888887 788999999997 589999999965332 234778865 4445666678888777733 22
Q ss_pred E----EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC-cEEEEEEe
Q 019091 268 V----LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP-KLYEINLR 320 (346)
Q Consensus 268 V----v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp-~l~ev~l~ 320 (346)
+ +..+.+ ++. ...+.-+.|||||+.+++|||+-+.+| .||+++..
T Consensus 100 ~~~~~~~~~~l-~~~-------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 100 LDRADVQKISL-GFP-------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp --EEEEEEEE----S----------SS--EEEEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred cchhhceEEec-ccc-------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccc
Confidence 1 233443 221 023446899999999999999999999 58999873
No 66
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.04 E-value=0.00024 Score=70.57 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=102.3
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcC----------CCCCCeEEEEECC--CCcEEEE-eccCCCeeEEEEEEe
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTG----------LYGRSSVRRVALE--TGKVEAI-NQMEGSYFGEGLTLL 158 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStG----------lyg~s~V~~iDl~--Tgkv~~~-~~l~~~~FgeGit~~ 158 (346)
.++++.+-|-=.+| .+|+++++|+||++.. ....++|.+++.. +|+.... +-.+.-.+..|++..
T Consensus 3 ~~~l~A~~p~~~~P--~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~ 80 (367)
T TIGR02604 3 KVTLFAAEPLLRNP--IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA 80 (367)
T ss_pred EEEEEECCCccCCC--ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe
Confidence 45666654443456 6999999999999852 1122489888765 3554332 223334456889886
Q ss_pred CCEEEEEEeeCCEEEEE-ECC-------CCcEE-EEEecC------CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE
Q 019091 159 GEKLFQVTWLQKTGFIY-DQN-------NLNKL-EEFTHQ------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (346)
Q Consensus 159 g~~LY~ltw~~~~v~V~-D~~-------tl~~i-~ti~~~------~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi 223 (346)
.+.||++. ...++.+ |++ ..+++ ..++.+ .+.|..+.+|| +||+++|+..=....
T Consensus 81 ~~GlyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~------- 150 (367)
T TIGR02604 81 VGGVYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVT------- 150 (367)
T ss_pred cCCEEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceec-------
Confidence 54499986 4567766 543 12222 224321 13456667776 799999854111111
Q ss_pred EEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019091 224 RKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 224 ~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
..+.+.. ++. +....|.++||+++++. .+.. ++ ..++|+||++++ +
T Consensus 151 ------~~~~~~~--~~~-----------~~~g~i~r~~pdg~~~e-~~a~-G~------------rnp~Gl~~d~~G-~ 196 (367)
T TIGR02604 151 ------RPGTSDE--SRQ-----------GLGGGLFRYNPDGGKLR-VVAH-GF------------QNPYGHSVDSWG-D 196 (367)
T ss_pred ------cCCCccC--ccc-----------ccCceEEEEecCCCeEE-EEec-Cc------------CCCccceECCCC-C
Confidence 0000000 000 12456889999988753 3322 33 257999999976 4
Q ss_pred EEEecCCCCcEEEE
Q 019091 304 IFVTGKLWPKLYEI 317 (346)
Q Consensus 304 LfVTGK~Wp~l~ev 317 (346)
+|+|.-..+...+|
T Consensus 197 l~~tdn~~~~~~~i 210 (367)
T TIGR02604 197 VFFCDNDDPPLCRV 210 (367)
T ss_pred EEEEccCCCceeEE
Confidence 57775555555554
No 67
>PHA02713 hypothetical protein; Provisional
Probab=98.02 E-value=0.00075 Score=70.96 Aligned_cols=198 Identities=12% Similarity=0.120 Sum_probs=120.3
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCC-C---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee
Q 019091 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY-G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL 168 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGly-g---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~ 168 (346)
+..+...|..... .+.+.. ++.||+..|.. + .+.+..||+.+++-...-+++..-...+++..+++||+.--.
T Consensus 284 W~~l~~mp~~r~~--~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 284 YSVISTIPNHIIN--YASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred EEECCCCCccccc--eEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCc
Confidence 3444445543333 355554 68999998853 2 257899999999765555665444456788899999998544
Q ss_pred C-----CEEEEEECCCCc--EEEEEecCCCceeEEeeCCCEEEEECC------------------------CCeEEEEeC
Q 019091 169 Q-----KTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDG------------------------SSMLYQIDP 217 (346)
Q Consensus 169 ~-----~~v~V~D~~tl~--~i~ti~~~~peGwGLt~Dg~~LyvSdG------------------------s~~l~vIDp 217 (346)
+ +.+.+||+.+.+ .+...+.+ ..+.+...-++.+|+.=| .+.+...||
T Consensus 361 ~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP 439 (557)
T PHA02713 361 NGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT 439 (557)
T ss_pred CCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECC
Confidence 2 468999987654 33444443 244455555677888533 356899999
Q ss_pred CCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC------CeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCc
Q 019091 218 QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT------DCIARISHED-GVVLGWVLLPNLRERLVAAGYNGID 290 (346)
Q Consensus 218 ~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s------n~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~ 290 (346)
++.+-.. +.....+.... .+...+|+|||--..+ +.|-+-||++ .+ |-.++.+... -
T Consensus 440 ~td~W~~---v~~m~~~r~~~-~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~---W~~~~~m~~~---------r 503 (557)
T PHA02713 440 VNNIWET---LPNFWTGTIRP-GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG---WELITTTESR---------L 503 (557)
T ss_pred CCCeEee---cCCCCcccccC-cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC---eeEccccCcc---------c
Confidence 9987642 21111111111 2556789999865332 3467889998 54 4434333211 1
Q ss_pred eeeEEEEeCCCCEEEEecCCCC
Q 019091 291 VLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 291 vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
.-.|+|.- +++|||+|...+
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred ccceeEEE--CCEEEEEeeecc
Confidence 12445554 569999998766
No 68
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00053 Score=70.12 Aligned_cols=201 Identities=11% Similarity=0.077 Sum_probs=136.6
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEEC-CCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVAL-ETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl-~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
......++.|++|+...++.. .+.+|++||. ..++.++.+. .....+.-.+.+.+ ++.+.--.++.|.+.|..+.
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s--~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGS--DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred cccceeeeEECCCCcEEEEec--CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCC
Confidence 455557999999998777776 6779999999 5567777764 33445565566666 77788788899999999999
Q ss_pred cEEEEEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE--EEEEeccCCeeeeeceeeEee-CCEEEEEecCC
Q 019091 181 NKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI--RKDIVRYKGREVRNLNELEFI-KGEVWANVWQT 255 (346)
Q Consensus 181 ~~i~ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi--~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s 255 (346)
+.++.++... --+..+.+||..|+.+..+..|.++|..+++.. +.+.=.....|+ +...+. +|+..+..+..
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPV---TSVQFSPNGKYLLSASLD 355 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCce---eEEEECCCCcEEEEecCC
Confidence 9999998642 233447789999999877999999999999843 333222221133 344443 56555555667
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+.+..-|..+++++..+...... ........+.+ +..+.++|-....|+-..+.
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNL----------VRCIFSPTLST-GGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CeEEEEEccCCcceeeecccCCc----------ceeEecccccC-CCCeEEEEeCCceEEEEeCC
Confidence 89999999999998888542211 01111122233 45666777777766665553
No 69
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=98.00 E-value=0.0017 Score=62.10 Aligned_cols=191 Identities=13% Similarity=0.228 Sum_probs=131.8
Q ss_pred CCEEEEEcCCCCCCeEEEE----EC-CCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 019091 115 NDTLFESTGLYGRSSVRRV----AL-ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~i----Dl-~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~ 189 (346)
++++|+..+..+. .|..+ |+ ..++..+.+.||-..-|-|-.+.++-||---...+.|..||.++.++.++...+
T Consensus 30 ~~~iy~~~~~~~~-~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~ 108 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELP 108 (250)
T ss_pred CCCEEEECccCCC-EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECC
Confidence 3489999887665 77777 34 556677777887656688888899988877778999999999999998665432
Q ss_pred -------CCce------eEEeeCCCEEEE---ECCCC---eEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE
Q 019091 190 -------MKDG------WGLATDGKVLFG---SDGSS---MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA 250 (346)
Q Consensus 190 -------~peG------wGLt~Dg~~Lyv---SdGs~---~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya 250 (346)
.+.. .-|+-|..=||| +.+++ .|..|||+|+++..++.+....+.+. +.=.+=|.|||
T Consensus 109 ~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~---naFmvCGvLY~ 185 (250)
T PF02191_consen 109 GAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAG---NAFMVCGVLYA 185 (250)
T ss_pred ccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhc---ceeeEeeEEEE
Confidence 1122 225667654444 44322 67899999999999999876433322 22234689998
Q ss_pred EecCC----CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 251 NVWQT----DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 251 Nv~~s----n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..-.+ ..-.+.|+.+++-. .+++ .+.. .-....-|.|+|..++||+-...-=-.|.|++
T Consensus 186 ~~s~~~~~~~I~yafDt~t~~~~-~~~i-~f~~--------~~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v~f 248 (250)
T PF02191_consen 186 TDSYDTRDTEIFYAFDTYTGKEE-DVSI-PFPN--------PYGNISMLSYNPRDKKLYAWDNGYQVTYDVRF 248 (250)
T ss_pred EEECCCCCcEEEEEEECCCCcee-ceee-eecc--------ccCceEeeeECCCCCeEEEEECCeEEEEEEEe
Confidence 65443 34578999998865 3444 2321 12245668899999999998766656666655
No 70
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0017 Score=64.94 Aligned_cols=183 Identities=11% Similarity=0.110 Sum_probs=105.6
Q ss_pred EEEEEcCC---CCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEecC-C
Q 019091 117 TLFESTGL---YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQ-M 190 (346)
Q Consensus 117 ~LyeStGl---yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~~-~ 190 (346)
.+|+++.. .+..+|.+.|.+.++......-+.....-..+++|++|+.+.+.+ ..++++|.++++...-.... .
T Consensus 165 ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~ 244 (430)
T PRK00178 165 ILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL 244 (430)
T ss_pred EEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC
Confidence 46766432 123468888998776433333333333344667888876555443 57999999887653322221 1
Q ss_pred CceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEE-Eec-CCCeEEEEeC
Q 019091 191 KDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWA-NVW-QTDCIARISH 263 (346)
Q Consensus 191 peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Lya-Nv~-~sn~I~vID~ 263 (346)
.....++|||++|++ ++ |...|+++|.++.+... +.- ..+.. .+..+. || +|+. ..- ....|.++|.
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~-~~~~~----~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTN-HPAID----TEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-ccc-CCCCc----CCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 234568999998865 43 56689999999887542 221 11111 122333 44 5554 332 2457999999
Q ss_pred CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEE
Q 019091 264 EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINL 319 (346)
Q Consensus 264 ~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l 319 (346)
++|++. .+.... . .-...+|+|+++.++.+...- -.|+.+.+
T Consensus 319 ~~g~~~-~lt~~~-~------------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 319 NGGRAE-RVTFVG-N------------YNARPRLSADGKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred CCCCEE-EeecCC-C------------CccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence 999863 332211 0 112367999999998876432 24555554
No 71
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.99 E-value=6.1e-05 Score=80.90 Aligned_cols=172 Identities=19% Similarity=0.240 Sum_probs=121.2
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEE
Q 019091 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D 176 (346)
+..|+..- .||+.++-+++.+|+|..| -+.+||+.+...+..+.++... .++..+. ..++++.-.+=.+.+||
T Consensus 489 ~~ah~~~V--~gla~D~~n~~~vsa~~~G--ilkfw~f~~k~l~~~l~l~~~~--~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 489 SPAHKGEV--TGLAVDGTNRLLVSAGADG--ILKFWDFKKKVLKKSLRLGSSI--TGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred CccccCce--eEEEecCCCceEEEccCcc--eEEEEecCCcceeeeeccCCCc--ceeeeeehhhhhhhhcCceeEEEEE
Confidence 33564333 7999998889999999655 8999999999999999998764 2333332 44666667778899999
Q ss_pred CCCCcEEEEEe-cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeee-ece-e-eEee----CC-
Q 019091 177 QNNLNKLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR-NLN-E-LEFI----KG- 246 (346)
Q Consensus 177 ~~tl~~i~ti~-~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~-~lN-E-LE~~----~G- 246 (346)
..|++++.+|. ++ .-.-+.+++||+||..+.-+.+|.++|..|...+.-+.|...-..+. .+| . |..+ +|
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gI 642 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGI 642 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceE
Confidence 99999999997 43 23556789999999999989999999999999999998865221111 011 1 2211 34
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019091 247 EVWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
++|+|--+=..++.=-...+++..+..++
T Consensus 643 ylWsNkslF~~vs~r~~~~~~~~~~v~lP 671 (910)
T KOG1539|consen 643 YLWSNKSLFKSVSTRAIPADYVPSWVMLP 671 (910)
T ss_pred EEEEchhHheeccccccCcccccceeecC
Confidence 78888654444433333344555555443
No 72
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=7.7e-05 Score=69.78 Aligned_cols=129 Identities=17% Similarity=0.132 Sum_probs=98.7
Q ss_pred EEEEEecC-CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEE
Q 019091 95 VVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 95 Vv~t~phd-~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~ 173 (346)
++.+-+.+ +..|.+|++-.+ +.+|.=|= .+..-.++|.+|-+.+.+...+++ |=|++.+++.|++.+- +..+.
T Consensus 80 ~~~s~~l~~~~~FgEGit~~g-d~~y~LTw--~egvaf~~d~~t~~~lg~~~y~Ge--GWgLt~d~~~LimsdG-satL~ 153 (262)
T COG3823 80 EIFSEKLAPDTVFGEGITKLG-DYFYQLTW--KEGVAFKYDADTLEELGRFSYEGE--GWGLTSDDKNLIMSDG-SATLQ 153 (262)
T ss_pred EEEEeecCCccccccceeecc-ceEEEEEe--ccceeEEEChHHhhhhcccccCCc--ceeeecCCcceEeeCC-ceEEE
Confidence 44555555 689999999985 57776654 455788899999999999999877 4458889998887764 46778
Q ss_pred EEECCCCcEEEEEecCCCceeEEeeC------CCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc
Q 019091 174 IYDQNNLNKLEEFTHQMKDGWGLATD------GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~~peGwGLt~D------g~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
..|++|++.+.++.+- -+|.-++.= ...||..= .++.|..|||++++|++.|.+..
T Consensus 154 frdP~tfa~~~~v~VT-~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 154 FRDPKTFAELDTVQVT-DDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred ecCHHHhhhcceEEEE-ECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccC
Confidence 8899999999999874 255444432 34455422 58899999999999999999854
No 73
>smart00284 OLF Olfactomedin-like domains.
Probab=97.98 E-value=0.0018 Score=62.16 Aligned_cols=192 Identities=15% Similarity=0.210 Sum_probs=128.0
Q ss_pred CEEEEEcCC-CCCCeEEEE----ECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE--ec
Q 019091 116 DTLFESTGL-YGRSSVRRV----ALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF--TH 188 (346)
Q Consensus 116 ~~LyeStGl-yg~s~V~~i----Dl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti--~~ 188 (346)
++.|+..+- +....|..+ |+..++....+.+|...-|-|..+.++-||---..++.+..||.++.++.++- +.
T Consensus 35 ~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~ 114 (255)
T smart00284 35 SLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNG 114 (255)
T ss_pred ceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCc
Confidence 578887542 234567776 45567777777888766688899999999987777899999999999987543 32
Q ss_pred -----CCCceeE------EeeCCCEEEE---ECCC-C--eEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEE
Q 019091 189 -----QMKDGWG------LATDGKVLFG---SDGS-S--MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (346)
Q Consensus 189 -----~~peGwG------Lt~Dg~~Lyv---SdGs-~--~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaN 251 (346)
..+..|+ |+-|.+=||| +.++ + .|..|||.|++++.++......+.+. +.=.+=|.|||.
T Consensus 115 a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~---naFmvCGvLY~~ 191 (255)
T smart00284 115 AGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSAS---NAFMICGILYVT 191 (255)
T ss_pred cccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCccccc---ccEEEeeEEEEE
Confidence 1234342 5666554443 5442 2 45799999999999999976433222 222346899987
Q ss_pred ec----CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 252 VW----QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 252 v~----~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.- .+..-...|+.|++-. .+++ .+... -....-|.|+|..++||+=+..--=+|.|+|.
T Consensus 192 ~s~~~~~~~I~yayDt~t~~~~-~~~i-~f~n~--------y~~~s~l~YNP~d~~LY~wdng~~l~Y~v~f~ 254 (255)
T smart00284 192 RSLGSKGEKVFYAYDTNTGKEG-HLDI-PFENM--------YEYISMLDYNPNDRKLYAWNNGHLVHYDIALK 254 (255)
T ss_pred ccCCCCCcEEEEEEECCCCccc-eeee-eeccc--------cccceeceeCCCCCeEEEEeCCeEEEEEEEec
Confidence 53 1223678899988743 4444 22211 12345588999999999987666666777664
No 74
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.0016 Score=65.87 Aligned_cols=173 Identities=13% Similarity=0.154 Sum_probs=100.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEE
Q 019091 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVL 203 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~L 203 (346)
...|.++|.+.+....-..-+.....-..+++|++|+.+.+.+ ..++++|.++.+...-.... ......++|||++|
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 4578999987665433333333333334566788877766543 46999999877643221221 22345689999988
Q ss_pred EE-E--CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEE-Eec-CCCeEEEEeCCCCeEEEEEECCc
Q 019091 204 FG-S--DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWA-NVW-QTDCIARISHEDGVVLGWVLLPN 276 (346)
Q Consensus 204 yv-S--dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Lya-Nv~-~sn~I~vID~~TG~Vv~~I~l~~ 276 (346)
++ . +|...|+++|.++.++.. +.-. .+.. .+..+. || +|+. ... ....|.++|.++|++. .+...+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~-~~~~----~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g 335 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTR-LTNH-FGID----TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQG 335 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEE-CccC-CCCc----cceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCC
Confidence 65 3 356689999999887532 2211 1111 123343 44 5554 332 2457999999988753 332211
Q ss_pred hhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019091 277 LRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 277 l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
.....++|+|+++.++.+....+ .|+.+.+
T Consensus 336 -------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 336 -------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred -------------CCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 01134799999999987754322 3555544
No 75
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.96 E-value=0.0029 Score=68.74 Aligned_cols=189 Identities=10% Similarity=0.071 Sum_probs=122.2
Q ss_pred eeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019091 108 QGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
.++.+.+. +..+.+++ .+..|++||..+++.+..+.-. ...+...+...++.++++.-.++.+.++|..+.+.+.+
T Consensus 536 ~~l~~~~~~~~~las~~--~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSN--FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeEEeccCCCCEEEEEe--CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 57777653 45666666 4569999999999887776532 33334333323455666666789999999999999998
Q ss_pred EecCCCceeEE---eeCCCEEEEECCCCeEEEEeCCCCcE-EEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019091 186 FTHQMKDGWGL---ATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 186 i~~~~peGwGL---t~Dg~~LyvSdGs~~l~vIDp~T~kv-i~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
+... ..-+.+ .++|+.|.+...++.|+++|..+.+. +.++. .+..++ +.+.+.++..+++.-.++.|.+.
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~--~h~~~V---~~v~f~~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI--GHSKTV---SYVRFVDSSTLVSSSTDNTLKLW 687 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec--CCCCCE---EEEEEeCCCEEEEEECCCEEEEE
Confidence 8754 233333 34688888887889999999987653 32322 222233 34666677656655568889999
Q ss_pred eCCCC------eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019091 262 SHEDG------VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 262 D~~TG------~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
|..++ +.+..+.- -....+.++++++++ +++||-....++--+
T Consensus 688 d~~~~~~~~~~~~l~~~~g-------------h~~~i~~v~~s~~~~-~lasgs~D~~v~iw~ 736 (793)
T PLN00181 688 DLSMSISGINETPLHSFMG-------------HTNVKNFVGLSVSDG-YIATGSETNEVFVYH 736 (793)
T ss_pred eCCCCccccCCcceEEEcC-------------CCCCeeEEEEcCCCC-EEEEEeCCCEEEEEE
Confidence 98754 22222210 123557799999876 566666666655544
No 76
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.0026 Score=64.47 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=106.4
Q ss_pred EEEEEcCC--CCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEEE--EEecCC
Q 019091 117 TLFESTGL--YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKLE--EFTHQM 190 (346)
Q Consensus 117 ~LyeStGl--yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i~--ti~~~~ 190 (346)
..|+.... ...+.|.++|.+.+.......-+.....-..+++|++|..+.+. ...++++|.++++... .++..
T Consensus 166 iayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~- 244 (429)
T PRK03629 166 IAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH- 244 (429)
T ss_pred EEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC-
Confidence 45766521 12568999999876543333322223334466678877665554 3579999998875433 33221
Q ss_pred CceeEEeeCCCEEEEE-C--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EE-EEEec-CCCeEEEEeC
Q 019091 191 KDGWGLATDGKVLFGS-D--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EV-WANVW-QTDCIARISH 263 (346)
Q Consensus 191 peGwGLt~Dg~~LyvS-d--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~L-yaNv~-~sn~I~vID~ 263 (346)
.....++|||++|+.+ + |...|+++|.++.+... +.-+. . ...+..+. || +| |+... ....|.++|+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~-~----~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGR-S----NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCC-C----CcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 2335689999988764 3 45689999999877542 22111 1 11233343 44 45 55443 2458999999
Q ss_pred CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEE
Q 019091 264 EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINL 319 (346)
Q Consensus 264 ~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l 319 (346)
++|++. .+.... ......+|+|+|+.++.++... ..||.+.+
T Consensus 319 ~~g~~~-~lt~~~-------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 319 NGGAPQ-RITWEG-------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CCCCeE-EeecCC-------------CCccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence 998763 332100 0123478999999987765433 34665554
No 77
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.0032 Score=63.57 Aligned_cols=172 Identities=7% Similarity=0.052 Sum_probs=101.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEEEEEe-cC-CCceeEEeeCCCE
Q 019091 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKLEEFT-HQ-MKDGWGLATDGKV 202 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i~ti~-~~-~peGwGLt~Dg~~ 202 (346)
...|.++|.+.+....-..-......-..+++|++|+.+... ...++++|..+++.. .+. .+ ......++|||++
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 568999998766543332223333334456678877666543 468999999887653 232 22 2244568999998
Q ss_pred EEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEE-EEec-CCCeEEEEeCCCCeEEEEEECC
Q 019091 203 LFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVW-QTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 203 Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-aNv~-~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
|++ ++ |...|+++|.++.+.. ++.-. .+. ..+..+. || +|+ +... ....|.++|.+++++. .+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~-~~~----~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~ 332 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDS-PAI----DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG 332 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCC-CCc----cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC
Confidence 754 43 5678999999987753 23221 111 1123333 44 444 4432 2457999999888764 33221
Q ss_pred chhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019091 276 NLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 276 ~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
. ...+..+|+|+++.++++....+ .|+.+.+
T Consensus 333 ~-------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 333 G-------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred C-------------CcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 0 01244789999999987654332 4554444
No 78
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.91 E-value=0.0028 Score=64.42 Aligned_cols=190 Identities=16% Similarity=0.150 Sum_probs=110.7
Q ss_pred EEecCCE----EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe--eCCEEEE--EECCCC--
Q 019091 111 LYAENDT----LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--LQKTGFI--YDQNNL-- 180 (346)
Q Consensus 111 ~~~~d~~----LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw--~~~~v~V--~D~~tl-- 180 (346)
.++|||+ +|+|. ..|...|.+.|+++|+......++...+.-..+++|++|..+.. ....+++ +|..+.
T Consensus 191 ~wSPDG~~~~~~y~S~-~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSY-KLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEc-cCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 5788872 35664 34778999999999987666667766666667788888766543 3335666 455442
Q ss_pred cEEEEEec---CCCceeEEeeCCCEE-EEEC--CCCeEEEEeCCC-CcEEEEEEeccCCeeeeeceeeEee-CC-EEE-E
Q 019091 181 NKLEEFTH---QMKDGWGLATDGKVL-FGSD--GSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-A 250 (346)
Q Consensus 181 ~~i~ti~~---~~peGwGLt~Dg~~L-yvSd--Gs~~l~vIDp~T-~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-a 250 (346)
.....+.. +......++|||++| |++| |..+|+++|... ......+.-.. .... ...+. || +|+ +
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~--~~~~---~p~wSPDG~~Laf~ 344 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY--RNSS---CPAWSPDGKKIAFC 344 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC--CCcc---ceeECCCCCEEEEE
Confidence 12222221 111234689999965 6676 456899988642 22222332211 1111 12222 44 444 4
Q ss_pred Eec-CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC--CCCcEEEEEEe
Q 019091 251 NVW-QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK--LWPKLYEINLR 320 (346)
Q Consensus 251 Nv~-~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK--~Wp~l~ev~l~ 320 (346)
... ....|.++|+++|++.....- . ......+|+|+++.|+.+.. ....||.+.+.
T Consensus 345 ~~~~g~~~I~v~dl~~g~~~~Lt~~-~-------------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRDYQLTTS-P-------------ENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EcCCCCcEEEEEECCCCCeEEccCC-C-------------CCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 332 234799999999987422110 0 01245789999998876543 34578888764
No 79
>PTZ00421 coronin; Provisional
Probab=97.90 E-value=0.0097 Score=61.96 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=123.5
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
..+.|+|++ .++.+++ .+..|++||+.+++.+..+.- ...........+++ +.++.-.++.+.++|+.+.+.+.+
T Consensus 129 ~~l~f~P~~~~iLaSgs--~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAG--ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred EEEEeCcCCCCEEEEEe--CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEE
Confidence 678999875 5777777 456999999999988777653 33343433334444 455556789999999999999888
Q ss_pred EecC-CC--ceeEEeeCCCEEEEE--C--CCCeEEEEeCCCCcE-EEEEEeccCCeeeeeceeeEee-CC-EEEEEecCC
Q 019091 186 FTHQ-MK--DGWGLATDGKVLFGS--D--GSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQT 255 (346)
Q Consensus 186 i~~~-~p--eGwGLt~Dg~~LyvS--d--Gs~~l~vIDp~T~kv-i~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~s 255 (346)
+... .. ......++++.++.+ + .+.+|.++|..+++. ...+...... .+ .-.-|. ++ .||+.-..+
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~-~~---~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS-AL---FIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC-ce---EEEEEcCCCCEEEEEEeCC
Confidence 8642 11 122345667776653 2 257899999987653 3333332211 11 111122 33 567665557
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC---------EEEEecCCCCcEEEEEE-eeccc
Q 019091 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN---------RIFVTGKLWPKLYEINL-REMKR 324 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~---------~LfVTGK~Wp~l~ev~l-~~~~~ 324 (346)
+.|.+.|..+++++...... ..+.-.|+++.|+.. |+|--.. ..|.-|.+ +|++.
T Consensus 282 g~Iriwdl~~~~~~~~~~~~------------s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~--~~i~pis~~vpRk~ 346 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSYS------------SVEPHKGLCMMPKWSLDTRKCEIARFYALTY--HSLYTIQMLLPRKQ 346 (493)
T ss_pred CeEEEEEeeCCceEEEeecc------------CCCCCcceEecccccccccceeeeEEEEecC--CeEEEEEEEeccCC
Confidence 88999999999987765431 112346788888654 7775432 35777777 47663
No 80
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.87 E-value=0.0018 Score=67.04 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=108.7
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC--eeEEEEEEeCCEEEEEEeeCCEEEEE
Q 019091 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLLGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~--~FgeGit~~g~~LY~ltw~~~~v~V~ 175 (346)
.-+|...-| +|..+||++=+.+.+ ++-++.+||..+++++.++.++.. .==.|+-..+++|..+. .++.+-.+
T Consensus 231 ~~aHkGsIf--alsWsPDs~~~~T~S--aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS-l~G~in~l 305 (603)
T KOG0318|consen 231 SDAHKGSIF--ALSWSPDSTQFLTVS--ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS-LSGTINYL 305 (603)
T ss_pred CCCccccEE--EEEECCCCceEEEec--CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE-cCcEEEEe
Confidence 335766776 899999996555555 567999999999999999988754 11234555566655444 46899999
Q ss_pred ECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEe
Q 019091 176 DQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANV 252 (346)
Q Consensus 176 D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv 252 (346)
++.+.+++..+.-- .-.-.++++|+++||..+-+..|.-+|-.++.--+-..- .+.. +++-|...+ +.||---
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~-~h~n---qI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK-GHTN---QIKGMAASESGELFTIG 381 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc-cccc---eEEEEeecCCCcEEEEe
Confidence 99999988888632 224556889999999998889999999877654221100 0111 222344444 5666555
Q ss_pred cCCCeEEEEeCCCCe
Q 019091 253 WQTDCIARISHEDGV 267 (346)
Q Consensus 253 ~~sn~I~vID~~TG~ 267 (346)
| +|++-+|+...+-
T Consensus 382 ~-Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 382 W-DDTLRVISLKDNG 395 (603)
T ss_pred c-CCeEEEEecccCc
Confidence 4 7888888665443
No 81
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.86 E-value=0.0037 Score=67.13 Aligned_cols=199 Identities=13% Similarity=0.087 Sum_probs=136.7
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-eeEEEEEEe--CCEEEEEEeeCCEEEEEECCCC
Q 019091 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl 180 (346)
.+-..|+.|+.+|+..+|+.+.| +|+.||+...+--++...|.. .|.. ++.+ |+.+...+-..=.++|.+.+|+
T Consensus 392 ts~Vt~v~f~~~g~~llssSLDG--tVRAwDlkRYrNfRTft~P~p~Qfsc-vavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLLSSSLDG--TVRAWDLKRYRNFRTFTSPEPIQFSC-VAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred CCceEEEEEEecCCEEEEeecCC--eEEeeeecccceeeeecCCCceeeeE-EEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 44447999999899888988877 999999999988888877643 4443 6665 6777777777778999999999
Q ss_pred cEEEEEec-CCC-ceeEEeeCCCEEEEECCCCeEEEEeC-CCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCe
Q 019091 181 NKLEEFTH-QMK-DGWGLATDGKVLFGSDGSSMLYQIDP-QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDC 257 (346)
Q Consensus 181 ~~i~ti~~-~~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp-~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~ 257 (346)
+++..+.- +.| .|..++++|..|+-.-=+.+|..+|- ..-..+.++++..+--.+. +-+++.+|-|+- .+..
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vs----frPdG~elaVaT-ldgq 543 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVS----FRPDGKELAVAT-LDGQ 543 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEE----EcCCCCeEEEEE-ecce
Confidence 99998873 333 55668899998777656889999984 2233455677754311111 223355777665 3778
Q ss_pred EEEEeCCCCeEEEEEEC----Cchhhhhhh---ccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 258 IARISHEDGVVLGWVLL----PNLRERLVA---AGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l----~~l~~~~~~---~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
|...|++.+..++.|+- ..-+..... .....+...--|.|++||+-+.-.|+.
T Consensus 544 Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s 603 (893)
T KOG0291|consen 544 ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES 603 (893)
T ss_pred EEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc
Confidence 99999999999977743 111111000 001234577789999999876655543
No 82
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.86 E-value=0.0028 Score=69.29 Aligned_cols=197 Identities=16% Similarity=0.107 Sum_probs=124.0
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEecc----------CC---Cee--EEEEEEeCCEEEEEEe---------eCCE
Q 019091 116 DTLFESTGLYGRSSVRRVALETGKVEAINQM----------EG---SYF--GEGLTLLGEKLFQVTW---------LQKT 171 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l----------~~---~~F--geGit~~g~~LY~ltw---------~~~~ 171 (346)
+++|+.+. +.+|..+|.+|||+.-.... +. ..+ ...-.+.++.+|+..+ -++.
T Consensus 261 ~rV~~~T~---Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 261 RRIILPTS---DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CEEEEecC---CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 38888875 45999999999998854322 11 111 1112446788998754 1578
Q ss_pred EEEEECCCCcEEEEEecC-----------------CCceeE-Eee--CCCEEEEE-----------------C-CCCeEE
Q 019091 172 GFIYDQNNLNKLEEFTHQ-----------------MKDGWG-LAT--DGKVLFGS-----------------D-GSSMLY 213 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-----------------~peGwG-Lt~--Dg~~LyvS-----------------d-Gs~~l~ 213 (346)
+..||.+|++++-++..+ .+..|+ .+. +.+.+|+- | -++.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999999999998642 123343 233 34556651 1 157899
Q ss_pred EEeCCCCcEEEEEEe-ccC-------CeeeeeceeeEeeCC----EEEEEecCCCeEEEEeCCCCeEEEEEECCc-----
Q 019091 214 QIDPQTLKVIRKDIV-RYK-------GREVRNLNELEFIKG----EVWANVWQTDCIARISHEDGVVLGWVLLPN----- 276 (346)
Q Consensus 214 vIDp~T~kvi~~I~V-~~~-------G~pv~~lNELE~~~G----~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~----- 276 (346)
-+|++|+|++=..+. ..+ ..| .|-+++..+| -||+.. .+..+.++|.+||+.+-.+..-.
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p--~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l~~~~e~~vp~~~ 494 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQP--SLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPIVPVEEVPVPQGA 494 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCc--eEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEEeeceeecCCccC
Confidence 999999999754444 211 122 2333443366 355444 46789999999999886542210
Q ss_pred hh-----------------hhhh---------------------------------h-----ccCCCCceeeEEEEeCCC
Q 019091 277 LR-----------------ERLV---------------------------------A-----AGYNGIDVLNGIAWDSNR 301 (346)
Q Consensus 277 l~-----------------~~~~---------------------------------~-----~~~~~~~vlNGIA~d~~~ 301 (346)
+. +.+. + .+...+.-..|+||||++
T Consensus 495 ~~ge~~sptQp~~~~~~~~~~~~~~d~~g~t~~dq~~cr~~~~~~~~~g~~tPps~~~~~~~Pg~~Gg~nW~~~a~dP~~ 574 (764)
T TIGR03074 495 VPGERYSPTQPFSVLTFGPPTLTESDMWGATPFDQLACRIQFKSLRYEGLYTPPSEQGSLVFPGNLGGFNWGGVAVDPTR 574 (764)
T ss_pred CCCccccccccccccccCCcccchhhccCCChhHhhhhhhhhcccccCCCcCCCCCCceEEecCCcccCCCCCceECCCC
Confidence 00 0000 0 011235567899999999
Q ss_pred CEEEEecCCCCcEEEEE
Q 019091 302 NRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 302 ~~LfVTGK~Wp~l~ev~ 318 (346)
+.+||.-.+++..++..
T Consensus 575 g~~yv~~~~~~~~~~~~ 591 (764)
T TIGR03074 575 QVMFVNPMRLPFVSQLV 591 (764)
T ss_pred CEEEEEChhcceeeEee
Confidence 99999999999777653
No 83
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.82 E-value=0.0018 Score=63.95 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=111.5
Q ss_pred EecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 019091 112 YAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 112 ~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~ 189 (346)
...|+++|+.+. .| .|..+|+++|+++=+..+.. ..+..++...+++||+.+|.. .++.+|..+++++-+++.+
T Consensus 65 ~~~dg~v~~~~~-~G--~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 65 ADGDGTVYVGTR-DG--NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTLVWSRNVG 140 (370)
T ss_pred EeeCCeEEEecC-CC--cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc-eEEEEECCCCcEEEEEecC
Confidence 566899999743 13 99999999999876665553 556667777788999999987 9999999999999999976
Q ss_pred CCceeE--EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC-CCeEEEEeCCCC
Q 019091 190 MKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-TDCIARISHEDG 266 (346)
Q Consensus 190 ~peGwG--Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~-sn~I~vID~~TG 266 (346)
...=|. ......++|+.+.++.++-+|++|++.+=+..+... .+..........+|.+|+.... +..+..+|+++|
T Consensus 141 ~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 141 GSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDG 219 (370)
T ss_pred CCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCcceEEEEEccCC
Confidence 300011 122456777766788999999999998766555331 1111111222567889986532 558999999999
Q ss_pred eEEEEE
Q 019091 267 VVLGWV 272 (346)
Q Consensus 267 ~Vv~~I 272 (346)
...-..
T Consensus 220 ~~~w~~ 225 (370)
T COG1520 220 TLKWSQ 225 (370)
T ss_pred cEeeee
Confidence 988764
No 84
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.00096 Score=65.11 Aligned_cols=198 Identities=18% Similarity=0.210 Sum_probs=127.7
Q ss_pred EEEEEEecCCCCcceeEEEecCC--EEEEEcCCCCCCeEEEEECCCCcEEEEec--cCCCeeEEEEEE-eCCEEEEEEe-
Q 019091 94 QVVNEFPHDPRAFTQGLLYAEND--TLFESTGLYGRSSVRRVALETGKVEAINQ--MEGSYFGEGLTL-LGEKLFQVTW- 167 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~--~LyeStGlyg~s~V~~iDl~Tgkv~~~~~--l~~~~FgeGit~-~g~~LY~ltw- 167 (346)
+++.......+. .|++++|.- .+...- +-| ..-.+||+.+++....+. -+..+||+|+-- +|..||..-.
T Consensus 59 k~v~~~~lpaR~--Hgi~~~p~~~ravafAR-rPG-tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 59 KIVFATALPARG--HGIAFHPALPRAVAFAR-RPG-TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred ceeeeeeccccc--CCeecCCCCcceEEEEe-cCC-ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 455555554455 799998754 244442 113 477889999998766664 356789999866 5566776521
Q ss_pred ---eCCEEEEEECC-CCcEEEEEec-C-CCceeEEeeCCCEEEEECC---CC---------------eEEEEeCCCCcEE
Q 019091 168 ---LQKTGFIYDQN-NLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDG---SS---------------MLYQIDPQTLKVI 223 (346)
Q Consensus 168 ---~~~~v~V~D~~-tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdG---s~---------------~l~vIDp~T~kvi 223 (346)
..+.+=|||.. -++.+++|+. + .|.-+-+.+||+.|.++|| +. ++..+|..|++++
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 23567789964 6788888885 3 4666678999999999997 33 5678888888775
Q ss_pred EEEEec--------------cC-------------------------CeeeeeceeeE--------ee--------CCEE
Q 019091 224 RKDIVR--------------YK-------------------------GREVRNLNELE--------FI--------KGEV 248 (346)
Q Consensus 224 ~~I~V~--------------~~-------------------------G~pv~~lNELE--------~~--------~G~L 248 (346)
.+.... .+ |+|+..+---| |+ +|-+
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 544433 11 22222111000 11 3455
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019091 249 WANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 249 yaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
-++.-..|+..++|.+||+|+..-.+.++.+.. ..-+|++.+.-+.+
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva--------~~~~gf~vssg~G~ 341 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAALPDAAGVA--------AAKGGFAVSSGQGR 341 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEecccccccccce--------eccCceEEecCCce
Confidence 567777899999999999999998776655431 13366666654443
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0067 Score=59.36 Aligned_cols=201 Identities=15% Similarity=0.166 Sum_probs=132.3
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC----------------------------------
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG---------------------------------- 148 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~---------------------------------- 148 (346)
....+.-|.|+.+|.+.+++. .+++++.||..+|+..+.+...+
T Consensus 13 ~~~~i~sl~fs~~G~~litss--~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSS--EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEec--CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 345567899999886555544 56799999999999888775431
Q ss_pred ---Cee-EE-----EEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCC
Q 019091 149 ---SYF-GE-----GLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQ 218 (346)
Q Consensus 149 ---~~F-ge-----Git~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~ 218 (346)
+|| |+ .|... .+..|+..-.++.+...|.++-+-.+-+....+--.+++|.|-.+-++++++.|...|.+
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 112 11 11111 134566666677777777776666666666433444566777777778888899999988
Q ss_pred CCcE--EEEEEeccCCeeeeeceeeEee-CCE-EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeE
Q 019091 219 TLKV--IRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNG 294 (346)
Q Consensus 219 T~kv--i~~I~V~~~G~pv~~lNELE~~-~G~-LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNG 294 (346)
.+.. -.++.++++ +...-|+||+- ||+ |.+.- ..+.+.+||.-+|.+..+... .+ .....+-+
T Consensus 171 s~dkgPF~tf~i~~~--~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tfs~---~~-------~~~~~~~~ 237 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDN--DEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTFSG---YP-------NAGNLPLS 237 (311)
T ss_pred ccCCCCceeEccCCC--CccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeEee---cc-------CCCCccee
Confidence 7632 355666543 22345778887 464 66554 467799999999999999854 21 22345667
Q ss_pred EEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 295 IAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 295 IA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..|+||++. +++|-..++|.-=.+
T Consensus 238 a~ftPds~F-vl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 238 ATFTPDSKF-VLSGSDDGTIHVWNL 261 (311)
T ss_pred EEECCCCcE-EEEecCCCcEEEEEc
Confidence 889999874 455666677665444
No 86
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.78 E-value=0.0018 Score=68.44 Aligned_cols=197 Identities=18% Similarity=0.196 Sum_probs=135.5
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCC-C---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY-G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGly-g---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw 167 (346)
.+.-+...|..... .|+++. +|.||+..|.. | -+.+-+||+.+++=....++...-.+.|++..++.||++-.
T Consensus 312 ~w~~~a~m~~~r~~--~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG 388 (571)
T KOG4441|consen 312 EWSSLAPMPSPRCR--VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGG 388 (571)
T ss_pred cEeecCCCCccccc--ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEec
Confidence 45556666664444 588887 47999998865 2 37889999999997776677776678889999999999855
Q ss_pred eC-----CEEEEEECCCC--cEEEEEecCCCceeEEeeCCCEEEEECC----C---CeEEEEeCCCCcEEEEEEecc--C
Q 019091 168 LQ-----KTGFIYDQNNL--NKLEEFTHQMKDGWGLATDGKVLFGSDG----S---SMLYQIDPQTLKVIRKDIVRY--K 231 (346)
Q Consensus 168 ~~-----~~v~V~D~~tl--~~i~ti~~~~peGwGLt~Dg~~LyvSdG----s---~~l~vIDp~T~kvi~~I~V~~--~ 231 (346)
.+ +.+-.||+.+- +.++..+.. ..|.|++.=+++||+.=| + +++...||.|.+-...-+... .
T Consensus 389 ~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 389 FDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS 467 (571)
T ss_pred cccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc
Confidence 44 45888998754 444444443 688899998999999654 3 579999999988765444433 1
Q ss_pred CeeeeeceeeEeeCCEEEEEecC-----CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019091 232 GREVRNLNELEFIKGEVWANVWQ-----TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 232 G~pv~~lNELE~~~G~LyaNv~~-----sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
+.. +...+|+|||-=.. .++|-+.||++.+....-++ ... ..--|++. .++++||
T Consensus 468 ~~g------~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~---------rs~~g~~~--~~~~ly~ 527 (571)
T KOG4441|consen 468 GFG------VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSP---------RSAVGVVV--LGGKLYA 527 (571)
T ss_pred cce------EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC---ccc---------cccccEEE--ECCEEEE
Confidence 222 55668899974332 34588899999986555323 211 11234444 3679999
Q ss_pred ecCCCC
Q 019091 307 TGKLWP 312 (346)
Q Consensus 307 TGK~Wp 312 (346)
.|+...
T Consensus 528 vGG~~~ 533 (571)
T KOG4441|consen 528 VGGFDG 533 (571)
T ss_pred EecccC
Confidence 999443
No 87
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.0012 Score=64.98 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=100.1
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
-.|- +.|..++||++++++. -+..|..||+..|..+.++.++....+.-..+.+....+++-.+..-.+++-.+ .
T Consensus 65 ~~pi-~sl~WS~dgr~LltsS--~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~ 139 (405)
T KOG1273|consen 65 VRPI-TSLCWSRDGRKLLTSS--RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--P 139 (405)
T ss_pred ccce-eEEEecCCCCEeeeec--CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--C
Confidence 3453 7899999999888877 567999999999999999999988888777777777777776666666666554 2
Q ss_pred EEE-EecC-------CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEe
Q 019091 183 LEE-FTHQ-------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (346)
Q Consensus 183 i~t-i~~~-------~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv 252 (346)
+++ ++.. .+..-.++.-|+++|+-++-+.+.|+|++|++.++...+.. +.++-.+++. +|+-++-|
T Consensus 140 ~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 140 KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEe
Confidence 222 2321 11111245568999999999999999999999998887754 2233345544 56544433
No 88
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.0057 Score=61.86 Aligned_cols=182 Identities=14% Similarity=0.146 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEecC-CCce
Q 019091 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQ-MKDG 193 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~~-~peG 193 (346)
..|++.. .+.+.|..+|.+.........-+.....--.+++|++|+.+...+ ..++++|.++++...-...+ ....
T Consensus 166 iayv~~~-~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~ 244 (427)
T PRK02889 166 IAYVIKT-GNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSA 244 (427)
T ss_pred EEEEEcc-CCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccc
Confidence 4677643 246789999986543322222222222334566788877665433 46999999888654322222 2234
Q ss_pred eEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEE-EEec-CCCeEEEEeCCCC
Q 019091 194 WGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVW-QTDCIARISHEDG 266 (346)
Q Consensus 194 wGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-aNv~-~sn~I~vID~~TG 266 (346)
...+|||++|++ ++ |...|+.+|..+.+. .++.-. .+.. .+..+. || +|+ +... ....|.++|..++
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~-~~~~----~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQS-SGID----TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCCC-CCCC----cCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 568999998865 43 567899999877653 233211 1111 123333 45 454 4432 3557999998888
Q ss_pred eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019091 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 267 ~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
++. .+...+ ......+|+|+|+.++.+....+ .||.+++
T Consensus 319 ~~~-~lt~~g-------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 319 AAQ-RVTFTG-------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred ceE-EEecCC-------------CCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 753 232211 00123689999998876554322 4555554
No 89
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=97.74 E-value=7.9e-05 Score=50.50 Aligned_cols=34 Identities=35% Similarity=0.344 Sum_probs=31.3
Q ss_pred eCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccC
Q 019091 198 TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 198 ~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
+|+++||++| ++++|.+||++++++++++.|+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~ 35 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY 35 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC
Confidence 5899999999 699999999999999999999763
No 90
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.73 E-value=0.00089 Score=63.84 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=59.4
Q ss_pred CCCceeEEeeCCCEEEEECC-CCeE--EEEeCCCCcEEEEEEecc--CCeeeeeceeeEee------CCEEEEEecCCCe
Q 019091 189 QMKDGWGLATDGKVLFGSDG-SSML--YQIDPQTLKVIRKDIVRY--KGREVRNLNELEFI------KGEVWANVWQTDC 257 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSdG-s~~l--~vIDp~T~kvi~~I~V~~--~G~pv~~lNELE~~------~G~LyaNv~~sn~ 257 (346)
+.+.|..-+.|.|..|..|. +-+| +-.|-.|+.+..+-.+-+ ..+|+. +++++ +|.|||++|...+
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e---~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE---SLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC---CCCCCcceEccCCcEEEEEecCcE
Confidence 34566666678899999996 4477 444588877764433322 112332 23332 5789999999999
Q ss_pred EEEEeCCCCeEEEEEECC
Q 019091 258 IARISHEDGVVLGWVLLP 275 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~ 275 (346)
|.++||.||+++.+|.++
T Consensus 235 V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIKLP 252 (310)
T ss_pred EEEECCCCCcEEEEEEcC
Confidence 999999999999999874
No 91
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.0015 Score=66.81 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=91.7
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCC------CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG------SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~------~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
|-..|.++|+ ...++|+. -..+.||+.+.|+..--++.. +.|. ++.+++ ..+....++-+.++-+.|.
T Consensus 261 ~~a~f~p~G~~~i~~s~rr--ky~ysyDle~ak~~k~~~~~g~e~~~~e~Fe--VShd~~-fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRR--KYLYSYDLETAKVTKLKPPYGVEEKSMERFE--VSHDSN-FIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred ceeeecCCCceEEEecccc--eEEEEeeccccccccccCCCCcccchhheeE--ecCCCC-eEEEcccCceEEeehhhhh
Confidence 6677888886 66666743 489999999999877665532 2343 455555 4445677899999999999
Q ss_pred cEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019091 181 NKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 181 ~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
+.+.++..+ .-.+..++.||+.||++.|+++|+++|..+..++++.....
T Consensus 336 eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 336 ELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred hhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC
Confidence 999999975 23556688999999999999999999999999998887743
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.70 E-value=0.0012 Score=63.39 Aligned_cols=203 Identities=12% Similarity=0.164 Sum_probs=132.2
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEE--EEEeCCEEEEEEeeCCEE
Q 019091 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG--LTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeG--it~~g~~LY~ltw~~~~v 172 (346)
.+.++.| +--....+|+.|..-+++.| .+.-+++||+..-+--. ..+.+.+-|.= +=...++-+...-.++.|
T Consensus 93 elhsf~h--khivk~~af~~ds~~lltgg--~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 93 ELHSFEH--KHIVKAVAFSQDSNYLLTGG--QEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhh--hheeeeEEecccchhhhccc--hHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 4455555 33346778887665445545 34467888887654210 01222221111 111345545555778999
Q ss_pred EEEECCCCcEEEEEecCC-CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEE
Q 019091 173 FIYDQNNLNKLEEFTHQM-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~-peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaN 251 (346)
-..|..|++.+.++...+ ..-..+++||+.|-+++|+ .|.|+|+.+|.+++..++..+=... -|++.. .+||.
T Consensus 168 RLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs-sV~Fwdaksf~~lKs~k~P~nV~SA----SL~P~k-~~fVa 241 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS-SVKFWDAKSFGLLKSYKMPCNVESA----SLHPKK-EFFVA 241 (334)
T ss_pred EEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCc-eeEEeccccccceeeccCccccccc----cccCCC-ceEEe
Confidence 999999999999998753 4566799999999999986 7999999999999998886521111 144434 78877
Q ss_pred ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 252 VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
-...-.+.+.|=.||+-++.++-+-.. -...+.|+|+| .+|-.|-..++|.-=+..|
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~g------------pVhcVrFSPdG-E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFG------------PVHCVRFSPDG-ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCC------------ceEEEEECCCC-ceeeccCCCceEEEEEecC
Confidence 666778999999999988775221111 23568899986 4677777777665444444
No 93
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.69 E-value=0.0097 Score=64.08 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=122.3
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019091 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
-+.-++++|||++..+.+ ++++|.+||..+|--..+..-. ...=|.-++.. ++...+.-.+++|-.+|.+..+..+
T Consensus 352 ~i~~l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ceeeEEECCCCcEEEecc--CCCcEEEEeccCceEEEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeeecccceee
Confidence 346899999999998887 6779999999998654444322 22212222233 4455566778999999999999999
Q ss_pred EEecCCCc---eeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEE
Q 019091 185 EFTHQMKD---GWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIAR 260 (346)
Q Consensus 185 ti~~~~pe---GwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~v 260 (346)
||..+.|- -.++.|.|+.+.+..- +=.|++++.+|++++..+.=.+ -|+..| .+.+.+.-|+-..| +++|-+
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE--gPVs~l-~f~~~~~~LaS~SW-DkTVRi 504 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE--GPVSGL-SFSPDGSLLASGSW-DKTVRI 504 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC--Ccceee-EEccccCeEEeccc-cceEEE
Confidence 99764221 2223444888888664 5589999999999987666544 365532 12333456666777 677766
Q ss_pred EeCCCC-eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 261 ISHEDG-VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 261 ID~~TG-~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
=|.-.. ..++++.+ . -+++ ++++.|+|+++-|+-
T Consensus 505 W~if~s~~~vEtl~i---~----------sdvl-~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEI---R----------SDVL-AVSFRPDGKELAVAT 539 (893)
T ss_pred EEeeccCceeeeEee---c----------ccee-EEEEcCCCCeEEEEE
Confidence 665433 23466644 1 1355 499999999999873
No 94
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.63 E-value=0.012 Score=56.63 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=100.3
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcE--EEEeccC-CCeeEEEEEEeCCEEEEEEeeCC
Q 019091 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV--EAINQME-GSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv--~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
.-.++|+|...- ..-|++.||++.+..+| ...|+.||+.+++- +..+... ++.-..|+-.+|+-.|... .++
T Consensus 31 ~C~rTiqh~dsq-VNrLeiTpdk~~LAaa~---~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs-eDg 105 (311)
T KOG0315|consen 31 ICSRTIQHPDSQ-VNRLEITPDKKDLAAAG---NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS-EDG 105 (311)
T ss_pred eEEEEEecCccc-eeeEEEcCCcchhhhcc---CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC-CCc
Confidence 456788884333 37899999888776654 46999999999875 4455444 5666777877887777654 579
Q ss_pred EEEEEECCCCcEEEEEecCCC-ceeEEeeCCCEEEEECCCCeEEEEeCCCC-----------cEEEEEEeccCCe
Q 019091 171 TGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTL-----------KVIRKDIVRYKGR 233 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~-----------kvi~~I~V~~~G~ 233 (346)
.+-|.|...+..-+.+.+.+| .-..+.|+...|+++|.+..|.++|..+. +-+.++.|..+|.
T Consensus 106 t~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred eEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 999999999888888876533 34457889999999999999999997664 3466777765544
No 95
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.61 E-value=0.00079 Score=68.84 Aligned_cols=156 Identities=18% Similarity=0.268 Sum_probs=83.5
Q ss_pred eeEEEEEEecCC--CCcceeEEEecCCEEEEEc-------------------CCCCCCeEEEEECCCCcEEEEeccCCCe
Q 019091 92 TIQVVNEFPHDP--RAFTQGLLYAENDTLFEST-------------------GLYGRSSVRRVALETGKVEAINQMEGSY 150 (346)
Q Consensus 92 t~~Vv~t~phd~--~~FTqGL~~~~d~~LyeSt-------------------Glyg~s~V~~iDl~Tgkv~~~~~l~~~~ 150 (346)
|.+|..+.+.+. ..|..-+-+.+...+.+|+ ++|| ++|++||+.++|+++.+.+++.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG-~~l~vWD~~~r~~~Q~idLg~~- 243 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYG-HSLHVWDWSTRKLLQTIDLGEE- 243 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S---EEEEEETTTTEEEEEEES-TT-
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhccccc-CeEEEEECCCCcEeeEEecCCC-
Confidence 577888887643 4454444555544444443 3577 6999999999999999999873
Q ss_pred eEEEEEEe---------CCEEEEEEeeCCEEEEEEC-C--CCcEEEEEecC--CCceeE-------------------Ee
Q 019091 151 FGEGLTLL---------GEKLFQVTWLQKTGFIYDQ-N--NLNKLEEFTHQ--MKDGWG-------------------LA 197 (346)
Q Consensus 151 FgeGit~~---------g~~LY~ltw~~~~v~V~D~-~--tl~~i~ti~~~--~peGwG-------------------Lt 197 (346)
|..+. ...-|+....+..|+.+=. + +.+..+-|.++ .-+||. ||
T Consensus 244 ---g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 244 ---GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp ---EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred ---CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 32221 2578888888888887654 2 33333333332 124552 56
Q ss_pred eCCCEEEEEC-CCCeEEEEe---CCCCcEEEEEEeccC----------Ceeee---eceeeEeeCCEEEEEe
Q 019091 198 TDGKVLFGSD-GSSMLYQID---PQTLKVIRKDIVRYK----------GREVR---NLNELEFIKGEVWANV 252 (346)
Q Consensus 198 ~Dg~~LyvSd-Gs~~l~vID---p~T~kvi~~I~V~~~----------G~pv~---~lNELE~~~G~LyaNv 252 (346)
.|.++||+|+ +.+.|.+.| |..-+++.++.+|.- |+++. ++-+|..++.+||+++
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 6899999999 899998887 566788899988741 22221 3334555566999976
No 96
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.59 E-value=0.013 Score=56.94 Aligned_cols=186 Identities=12% Similarity=0.125 Sum_probs=127.9
Q ss_pred EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEE
Q 019091 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V 174 (346)
++.+. +..-|.++++.++||....|.+. +..++.||+.+|+-.++..-. ....+..+..++ +=.+.--.++++.+
T Consensus 56 ~r~~~-GHsH~v~dv~~s~dg~~alS~sw--D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTikl 131 (315)
T KOG0279|consen 56 VRRLT-GHSHFVSDVVLSSDGNFALSASW--DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKL 131 (315)
T ss_pred eeeee-ccceEecceEEccCCceEEeccc--cceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeee
Confidence 44443 24678899999999999999884 459999999999766655332 233333333344 44455677889999
Q ss_pred EECCCCcEEEEEecCCCceeE----EeeCC-CEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE
Q 019091 175 YDQNNLNKLEEFTHQMKDGWG----LATDG-KVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE 247 (346)
Q Consensus 175 ~D~~tl~~i~ti~~~~peGwG----Lt~Dg-~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~ 247 (346)
+|+...-.. ++.-++.-+|. ++|.. +-.++|-+ +.+|-++|.+++++.....-.. +++|.+++- ||.
T Consensus 132 wnt~g~ck~-t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~-----~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 132 WNTLGVCKY-TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS-----GYVNTVTVSPDGS 205 (315)
T ss_pred eeecccEEE-EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc-----ccEEEEEECCCCC
Confidence 997654333 33322225666 56665 55666666 7899999999999876554322 356667665 888
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+-+.-..+..+..-|.+.++-+.+++. .+..|.++|.|. |.|+.
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl~a--------------~~~v~sl~fspn--rywL~ 249 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSLEA--------------FDIVNSLCFSPN--RYWLC 249 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEeccC--------------CCeEeeEEecCC--ceeEe
Confidence 888877788899999999998776633 346789999986 44443
No 97
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.58 E-value=0.017 Score=63.27 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe---e----EEEEEE------------------eCCEEEEEEeeC
Q 019091 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY---F----GEGLTL------------------LGEKLFQVTWLQ 169 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~---F----geGit~------------------~g~~LY~ltw~~ 169 (346)
+++||+++. .+.|..+|.+|||++=+....... + ..|+++ .+++||+.+. +
T Consensus 194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~-D 269 (764)
T TIGR03074 194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS-D 269 (764)
T ss_pred CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC-C
Confidence 689999987 359999999999988777553221 0 123333 3458999887 7
Q ss_pred CEEEEEECCCCcEEEEEecC-----------CCce-eEEee----CCCEEEEEC----C------CCeEEEEeCCCCcEE
Q 019091 170 KTGFIYDQNNLNKLEEFTHQ-----------MKDG-WGLAT----DGKVLFGSD----G------SSMLYQIDPQTLKVI 223 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~-----------~peG-wGLt~----Dg~~LyvSd----G------s~~l~vIDp~T~kvi 223 (346)
++++.+|++|++++-+|... .+.| +..+. .++.+|+.. + +..|+-+|.+|++++
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 89999999999999877531 0111 12221 256777742 1 567999999999998
Q ss_pred EEEEec
Q 019091 224 RKDIVR 229 (346)
Q Consensus 224 ~~I~V~ 229 (346)
=+...+
T Consensus 350 W~~~~g 355 (764)
T TIGR03074 350 WAWDPG 355 (764)
T ss_pred eEEecC
Confidence 666553
No 98
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.56 E-value=0.0075 Score=60.96 Aligned_cols=166 Identities=15% Similarity=0.111 Sum_probs=99.0
Q ss_pred CCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcE--EEEEecCCCceeEEeeCCC
Q 019091 127 RSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNK--LEEFTHQMKDGWGLATDGK 201 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~--i~ti~~~~peGwGLt~Dg~ 201 (346)
.+.|.++|.+.+.. ..+. -......-..+++|++|+.+.+.+ ..++++|..+.+. +..++. ......++|||+
T Consensus 183 ~~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCC
Confidence 47899999876653 2222 222233444667788877666543 4799999988753 333332 223457899999
Q ss_pred EEEE-E--CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEE-EEec-CCCeEEEEeCCCCeEEEEEEC
Q 019091 202 VLFG-S--DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVW-QTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 202 ~Lyv-S--dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-aNv~-~sn~I~vID~~TG~Vv~~I~l 274 (346)
+|++ + +|.-.|+.+|+++.+.. ++.-+ .+ ...+..+. || +|+ +... ....|..+|..++.+ ..+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~~-~~----~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~ 333 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPS-QLTSG-AG----NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVGG 333 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeE-eeccC-CC----CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEecC
Confidence 8766 3 34557999999887643 33221 11 11234443 45 455 4332 244788888877764 22211
Q ss_pred CchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 275 PNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 275 ~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.. +..+|+|+++.+++++. ..++.+.+
T Consensus 334 -------------~~---~~~~~SpDG~~ia~~~~--~~i~~~Dl 360 (429)
T PRK01742 334 -------------RG---YSAQISADGKTLVMING--DNVVKQDL 360 (429)
T ss_pred -------------CC---CCccCCCCCCEEEEEcC--CCEEEEEC
Confidence 01 23679999999988766 56776665
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.56 E-value=0.017 Score=59.43 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=122.9
Q ss_pred eeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee-EEEEEEeCCEEEEEEeeCCEEEEEECCCC-cEEE
Q 019091 108 QGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF-GEGLTLLGEKLFQVTWLQKTGFIYDQNNL-NKLE 184 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F-geGit~~g~~LY~ltw~~~~v~V~D~~tl-~~i~ 184 (346)
.=..|.+ |++++.+++ ++..+..||+.+..|...+.-...|. ...+.+.++++.+.--++++|-++|+.+. ..+.
T Consensus 114 ~~~~f~~~d~t~l~s~s--Dd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGS--DDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred eEEEecccCCeEEEecC--CCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 3445564 457888877 66788888898887622222222232 23344567889999999999999999988 8889
Q ss_pred EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE-EEEEeccCCeeeeeceeeEee-CC-EEEEEecCCCeEEEE
Q 019091 185 EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI-RKDIVRYKGREVRNLNELEFI-KG-EVWANVWQTDCIARI 261 (346)
Q Consensus 185 ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi-~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~sn~I~vI 261 (346)
+++++.|----+.-.++.+++|-|.|.+-|+|.-++... .... .+.+.+. -|.+. ++ +|+..- .+..|=+.
T Consensus 192 elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~--~H~KtVT---cL~l~s~~~rLlS~s-LD~~VKVf 265 (487)
T KOG0310|consen 192 ELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMF--NHNKTVT---CLRLASDSTRLLSGS-LDRHVKVF 265 (487)
T ss_pred EecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhh--cccceEE---EEEeecCCceEeecc-cccceEEE
Confidence 999874443345556778899999999999998755432 1100 0122222 13333 33 666544 58889999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019091 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
|+.+-+|+..+.+++ .+| -||.+|+++.+++..-+--
T Consensus 266 d~t~~Kvv~s~~~~~-------------pvL-siavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 266 DTTNYKVVHSWKYPG-------------PVL-SIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred EccceEEEEeeeccc-------------cee-eEEecCCCceEEEecccce
Confidence 999999999997733 134 3889988888877755443
No 100
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.54 E-value=0.0093 Score=57.91 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=125.3
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC---EEEEEEeeCCEEEEEECCCCcEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE---KLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~---~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
.+++|++|++-.+|.. -+.+|..||...+-......-..+.+--=+...++ -+.+..-.++.|-|.|.+++++..
T Consensus 109 lsva~s~dn~qivSGS--rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGS--RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred EEEEecCCCceeecCC--CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 6999999998888865 45699999988765444443332333333444443 344555667999999999999999
Q ss_pred EEecC--CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019091 185 EFTHQ--MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 185 ti~~~--~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
++.-. .-.-..++|||... +|-| +.+++.+|.+..+-+-+..-. . .+|.|.+-..+.|...-....|-+-
T Consensus 187 ~~~gh~~~v~t~~vSpDGslc-asGgkdg~~~LwdL~~~k~lysl~a~---~---~v~sl~fspnrywL~~at~~sIkIw 259 (315)
T KOG0279|consen 187 TFIGHSGYVNTVTVSPDGSLC-ASGGKDGEAMLWDLNEGKNLYSLEAF---D---IVNSLCFSPNRYWLCAATATSIKIW 259 (315)
T ss_pred ccccccccEEEEEECCCCCEE-ecCCCCceEEEEEccCCceeEeccCC---C---eEeeEEecCCceeEeeccCCceEEE
Confidence 98742 12334578898754 3444 889999998877754333332 2 3456777777777555556779999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
|.++++++..+.+....+... ...-.---+||+++|.+||--
T Consensus 260 dl~~~~~v~~l~~d~~g~s~~----~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 260 DLESKAVVEELKLDGIGPSSK----AGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred eccchhhhhhccccccccccc----cCCcEEEEEEEcCCCcEEEee
Confidence 999999999998733322111 111122348999999999964
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.53 E-value=0.0077 Score=58.12 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=128.8
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
-+..+|+|.-+...+ .++.|..+|.++.++....++.- |-.-++..+ +.+|.+|...+.|-++.--.|+.+.+|.
T Consensus 111 ~i~wsp~g~~~~~~~--kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGN--KDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred EEEEcCCCCEEEEec--CcccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEEecCCceEEEEeccccccccccc
Confidence 456667775333334 56799999999999888877643 334455543 6799999999999999999999999997
Q ss_pred cCCCc--eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCC
Q 019091 188 HQMKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 188 ~~~pe--GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~ 264 (346)
.-.-+ -..++|||+++-+--.+..++.+|++-+--++.|+=-+. |+. .|.+- ||+..|.--.+..|=+-+.+
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVR---TlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVR---TLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceE---EEEeccCcceeeccCccceEEeEecc
Confidence 53112 334789999776644467899999987766666655443 443 24444 78888877667778888999
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
||.-+..|... .-.|-+||.|+...|--|+
T Consensus 262 tGd~~~eI~~~--------------~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 262 TGDRVWEIPCE--------------GPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred cCCeEEEeecc--------------CCceeEEecCCCceeeEEe
Confidence 99999999652 1358899999988776554
No 102
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.52 E-value=0.016 Score=57.16 Aligned_cols=176 Identities=15% Similarity=0.175 Sum_probs=121.4
Q ss_pred CCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECC-CCcEEEEEecCC-CceeE-EeeC
Q 019091 123 GLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN-NLNKLEEFTHQM-KDGWG-LATD 199 (346)
Q Consensus 123 Glyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~-tl~~i~ti~~~~-peGwG-Lt~D 199 (346)
++|-.+.|.+||-...+.+.+..+.... .++-+..++|.++. +++++||.-. +.+++..|++.. |-|.= ++|-
T Consensus 70 pky~pNkviIWDD~k~~~i~el~f~~~I--~~V~l~r~riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELSFNSEI--KAVKLRRDRIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEEeccce--eeEEEcCCeEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 5677899999997777777777776554 55778889988877 8999999865 888888888753 55522 3443
Q ss_pred -CCEEEEECC--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee----CCEEEEEecCCCe-EEEEeCCCCeEEEE
Q 019091 200 -GKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI----KGEVWANVWQTDC-IARISHEDGVVLGW 271 (346)
Q Consensus 200 -g~~LyvSdG--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~----~G~LyaNv~~sn~-I~vID~~TG~Vv~~ 271 (346)
++.+.+-=| .++|.+.|....+.-....|.. +.+++.+. +|.+.|+.-...+ |-+.|+.+|+.+.+
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A------H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA------HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceEEEc------ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 455555334 7899999987655532333322 22334443 6899998887777 55669999998877
Q ss_pred EECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC-CCcEEEEEE
Q 019091 272 VLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL-WPKLYEINL 319 (346)
Q Consensus 272 I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~-Wp~l~ev~l 319 (346)
+ +.+.. -.-++.|||+|+...|-|+-+. ==.||.++-
T Consensus 220 ~-----RRG~d------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 L-----RRGVD------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred e-----ecCCc------hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 5 33222 2368999999999988877433 234555554
No 103
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.51 E-value=0.014 Score=56.40 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=78.7
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCC---CeEEEEECCCCcE----EEEeccCCCeeEEEEEEeCCEEEEE
Q 019091 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR---SSVRRVALETGKV----EAINQMEGSYFGEGLTLLGEKLFQV 165 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~---s~V~~iDl~Tgkv----~~~~~l~~~~FgeGit~~g~~LY~l 165 (346)
...+...|. ++.+- +.+.. ++.||+-.|..+. +.+..+|+.+.+- ...-+++......+.+..+++||+.
T Consensus 53 W~~~~~lp~-~r~~~-~~~~~-~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~ 129 (323)
T TIGR03548 53 WVKDGQLPY-EAAYG-ASVSV-ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVG 129 (323)
T ss_pred EEEcccCCc-cccce-EEEEE-CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEE
Confidence 444445554 33331 23333 5789988775432 5788899988874 2223455444456678889999997
Q ss_pred Eee-----CCEEEEEECCCCc--EEEEEecCCCceeEEeeCCCEEEEECC-----CCeEEEEeCCCCcEE
Q 019091 166 TWL-----QKTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDG-----SSMLYQIDPQTLKVI 223 (346)
Q Consensus 166 tw~-----~~~v~V~D~~tl~--~i~ti~~~~peGwGLt~Dg~~LyvSdG-----s~~l~vIDp~T~kvi 223 (346)
--. .+.+++||+++.+ .+..++.....+..++.-++.||+-=| ...++.+||++.+-.
T Consensus 130 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 130 GGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 432 4689999987654 333444322334445455678888644 135788999987754
No 104
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.49 E-value=0.01 Score=58.37 Aligned_cols=137 Identities=17% Similarity=0.284 Sum_probs=91.6
Q ss_pred CCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEE---EEecC-CCceeE---EeeCCCEEEEE----CC------
Q 019091 148 GSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE---EFTHQ-MKDGWG---LATDGKVLFGS----DG------ 208 (346)
Q Consensus 148 ~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~---ti~~~-~peGwG---Lt~Dg~~LyvS----dG------ 208 (346)
.-|.|-.|+.. +++||.++..+++|-|||. +++.+. .|.-+ .|.|++ +-.-|.+|||+ |.
T Consensus 138 avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~-~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v 216 (336)
T TIGR03118 138 NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG-SFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEV 216 (336)
T ss_pred ceeeeeEEeecCCCceEEEeccCCCceEEecC-ccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccc
Confidence 44666444433 6899999999999999994 455432 23222 345444 56668999985 21
Q ss_pred ----CCeEEEEeCCCCcEEEEEEeccCCeeeeecee---eEe-------eCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 209 ----SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE---LEF-------IKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 209 ----s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE---LE~-------~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
-..|.++|+ +++.++++.-+. .||. |.. ..|.|.|-|+.+.+|.+.|+.+|+-++.+.=
T Consensus 217 ~G~G~G~VdvFd~-~G~l~~r~as~g------~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 217 AGAGLGYVNVFTL-NGQLLRRVASSG------RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred cCCCcceEEEEcC-CCcEEEEeccCC------cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 247889997 488888886654 2232 222 2578999999999999999999999888843
Q ss_pred CchhhhhhhccCCCCceeeEEEEeC
Q 019091 275 PNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 275 ~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
++-.+. ..+-|=||++-.
T Consensus 290 ~~G~pi-------~i~GLWgL~fGn 307 (336)
T TIGR03118 290 PDNHPV-------KVDGLWSLTFGN 307 (336)
T ss_pred CCCCeE-------EecCeEEeeeCC
Confidence 222221 134567777754
No 105
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.49 E-value=0.027 Score=56.35 Aligned_cols=173 Identities=13% Similarity=0.129 Sum_probs=118.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeE---EeeCCC--E
Q 019091 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGK--V 202 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG---Lt~Dg~--~ 202 (346)
..+.+++++.+.++=++.++..... +-...+||.|+-.. .+||||.++.+.+.+|..-.|.+-| +++... +
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~--VrmNr~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILA--VRMNRKRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY 143 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEE--EEEccceEEEEEcc--cEEEEecccceeehhhhccCCCccceEeeccCCCCce
Confidence 4677777777777777777775533 33345788887644 4999999999999999763134444 555543 3
Q ss_pred EEE-EC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCe-EEEEeCCCCeEEEEEECCchh
Q 019091 203 LFG-SD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDC-IARISHEDGVVLGWVLLPNLR 278 (346)
Q Consensus 203 Lyv-Sd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~-I~vID~~TG~Vv~~I~l~~l~ 278 (346)
|-. +. .+..|+++|+.+.+.+.+|.+.+. ++. .|.+. +|.+.|+--...+ |-|++..+|+-+... +
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~--~lA---alafs~~G~llATASeKGTVIRVf~v~~G~kl~eF-----R 213 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKG--PLA---ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF-----R 213 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCC--cee---EEEECCCCCEEEEeccCceEEEEEEcCCccEeeee-----e
Confidence 332 33 377999999999999999998653 322 35454 7899987766665 667888888876655 2
Q ss_pred hhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE--EEEEEee
Q 019091 279 ERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL--YEINLRE 321 (346)
Q Consensus 279 ~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l--~ev~l~~ 321 (346)
.+ .. -...+-|+|+|+++.|-+|+- -.++ |+++..+
T Consensus 214 RG-----~~-~~~IySL~Fs~ds~~L~~sS~-TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 214 RG-----TY-PVSIYSLSFSPDSQFLAASSN-TETVHIFKLEKVS 251 (391)
T ss_pred CC-----ce-eeEEEEEEECCCCCeEEEecC-CCeEEEEEecccc
Confidence 11 11 236789999999998777764 4444 4444444
No 106
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=97.47 E-value=0.00037 Score=47.15 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=33.6
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEe
Q 019091 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA 197 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt 197 (346)
++++||+++|.++.+.++|+++++.+++++++ .+++++.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~ 40 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVA 40 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEE
Confidence 57899999999999999999999999999997 3444543
No 107
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.46 E-value=0.019 Score=59.04 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=96.8
Q ss_pred cCCEEEEEc-----CCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEEeC--CEEEEEEee----------------
Q 019091 114 ENDTLFEST-----GLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLG--EKLFQVTWL---------------- 168 (346)
Q Consensus 114 ~d~~LyeSt-----Glyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~~g--~~LY~ltw~---------------- 168 (346)
++|.+|+|+ | .|...+..+|-+|-+++.+.+.+ ...||-.+-... +.+..+.|.
T Consensus 139 p~G~imIS~lGd~~G-~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 139 PDGRIMISALGDADG-NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp SS--EEEEEEEETTS--S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CCccEEEEeccCCCC-CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 677788774 4 46779999999999999999774 456776555543 444444453
Q ss_pred ---CCEEEEEECCCCcEEEEEecCCCceeE-----Ee--eCCCEEEEEC-CCCeEEEEeC-CCC--cEEEEEEeccC---
Q 019091 169 ---QKTGFIYDQNNLNKLEEFTHQMKDGWG-----LA--TDGKVLFGSD-GSSMLYQIDP-QTL--KVIRKDIVRYK--- 231 (346)
Q Consensus 169 ---~~~v~V~D~~tl~~i~ti~~~~peGwG-----Lt--~Dg~~LyvSd-Gs~~l~vIDp-~T~--kvi~~I~V~~~--- 231 (346)
.+.+.|.|-.+++.+++|+.+ .+|-. +. |+..+-||.- -+++|+.+=. +.. +..+-|.|...
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg-~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLG-EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred ccccCeEEEEECCCCcEeeEEecC-CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 689999999999999999997 46532 23 3466777744 4666665532 333 34455555431
Q ss_pred Ceee-----------eecee--eEeeCCEEEEEecCCCeEEEEeC---CCCeEEEEEECCchhhhh--hh-ccCCCCcee
Q 019091 232 GREV-----------RNLNE--LEFIKGEVWANVWQTDCIARISH---EDGVVLGWVLLPNLRERL--VA-AGYNGIDVL 292 (346)
Q Consensus 232 G~pv-----------~~lNE--LE~~~G~LyaNv~~sn~I~vID~---~TG~Vv~~I~l~~l~~~~--~~-~~~~~~~vl 292 (346)
|-.+ ..+-. |..+|.+||+++|...+|-.-|. ..=+.++.+-+.+....- .. .+.+-..-|
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 1100 11112 22336789999999999988765 556788999775543110 00 011112245
Q ss_pred eEEEEeCCCCEEEEecCC
Q 019091 293 NGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 293 NGIA~d~~~~~LfVTGK~ 310 (346)
+=|-++-||+|||||+-+
T Consensus 377 qMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp --EEE-TTSSEEEEE---
T ss_pred CeEEEccCCeEEEEEeec
Confidence 668899999999999754
No 108
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.46 E-value=0.022 Score=59.30 Aligned_cols=195 Identities=15% Similarity=0.170 Sum_probs=127.1
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc----CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019091 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM----EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l----~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
.-|.+-+.|+|||.+|.++| .+.+|..||=.||+.+..+.- .+..|+..-.++..++..+. -+..+-+.|..+
T Consensus 190 skFV~~VRysPDG~~Fat~g--sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S-aDkt~KIWdVs~ 266 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAG--SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS-ADKTIKIWDVST 266 (603)
T ss_pred ccceeeEEECCCCCeEEEec--CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-CCceEEEEEeec
Confidence 55999999999999999999 667999999999998887752 34556644444444443332 357788899999
Q ss_pred CcEEEEEecCC---CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCC
Q 019091 180 LNKLEEFTHQM---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTD 256 (346)
Q Consensus 180 l~~i~ti~~~~---peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn 256 (346)
.+++.+++.+. ..=.|.-..+++|+.-.-+..|.+++|....+.+.+.= +.+++..|- +...+.+||-..+ +.
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G--HnK~ITaLt-v~~d~~~i~Sgsy-DG 342 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG--HNKSITALT-VSPDGKTIYSGSY-DG 342 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc--cccceeEEE-EcCCCCEEEeecc-Cc
Confidence 99999999752 23344444577777766678999999999997665544 334554321 2222447886664 55
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.|.-=|..+|.-- .+. +..-.+..+|+|-+..++ ++|-...++|..+.+
T Consensus 343 ~I~~W~~~~g~~~------~~~------g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 343 HINSWDSGSGTSD------RLA------GKGHTNQIKGMAASESGE--LFTIGWDDTLRVISL 391 (603)
T ss_pred eEEEEecCCcccc------ccc------cccccceEEEEeecCCCc--EEEEecCCeEEEEec
Confidence 5555555555420 011 112345778899886444 334345566666655
No 109
>PLN02153 epithiospecifier protein
Probab=97.44 E-value=0.081 Score=51.66 Aligned_cols=155 Identities=12% Similarity=0.159 Sum_probs=93.5
Q ss_pred eEEEecCCEEEEEcCCCC-----CCeEEEEECCCCcEEEEeccC--CC--eeEEEEEEeCCEEEEEEee-----CCEEEE
Q 019091 109 GLLYAENDTLFESTGLYG-----RSSVRRVALETGKVEAINQME--GS--YFGEGLTLLGEKLFQVTWL-----QKTGFI 174 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg-----~s~V~~iDl~Tgkv~~~~~l~--~~--~FgeGit~~g~~LY~ltw~-----~~~v~V 174 (346)
+++.. ++.||+-.|... .+.+.++|+.+.+-.....++ ++ ..+..++..+++||+.--. -+.+++
T Consensus 27 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 105 (341)
T PLN02153 27 GIAVV-GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYS 105 (341)
T ss_pred eEEEE-CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEE
Confidence 55555 478999877532 257999999998765444432 22 2256677889999987332 257999
Q ss_pred EECCCCcE--EEEE-----ecCCCceeEEeeCCCEEEEECC------------CCeEEEEeCCCCcEEEEEEe-ccCCee
Q 019091 175 YDQNNLNK--LEEF-----THQMKDGWGLATDGKVLFGSDG------------SSMLYQIDPQTLKVIRKDIV-RYKGRE 234 (346)
Q Consensus 175 ~D~~tl~~--i~ti-----~~~~peGwGLt~Dg~~LyvSdG------------s~~l~vIDp~T~kvi~~I~V-~~~G~p 234 (346)
||+++.+- +... +.+ ..+-+++..++++|+-=| -+.|.++|+++.+-.. ++. +....+
T Consensus 106 yd~~t~~W~~~~~~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~ 183 (341)
T PLN02153 106 YDTVKNEWTFLTKLDEEGGPEA-RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEK 183 (341)
T ss_pred EECCCCEEEEeccCCCCCCCCC-ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCC
Confidence 99987543 3333 211 234455555677888533 1368899999887652 221 100011
Q ss_pred eeeceeeEeeCCEEEEEe-------------cCCCeEEEEeCCCCe
Q 019091 235 VRNLNELEFIKGEVWANV-------------WQTDCIARISHEDGV 267 (346)
Q Consensus 235 v~~lNELE~~~G~LyaNv-------------~~sn~I~vID~~TG~ 267 (346)
.... .+...+|+||+-- ...++|.+.|+++.+
T Consensus 184 r~~~-~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 184 RGGA-GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred CCcc-eEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 1111 1345688888731 124789999999886
No 110
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.44 E-value=0.0072 Score=58.16 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC-CceeE
Q 019091 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-KDGWG 195 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~-peGwG 195 (346)
+-+.|+. .+..|+.||-.||+.++++.++...--.-+..+|+ |+.+-....|...|++++.+++.++.+. -+--.
T Consensus 156 ~~iLSSa--dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SAS 231 (334)
T KOG0278|consen 156 KCILSSA--DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESAS 231 (334)
T ss_pred ceEEeec--cCCceEEEEeccCcEEEEEecCCCCcceeeccCCC--EEEEecCceeEEeccccccceeeccCcccccccc
Confidence 3344444 55699999999999999998876553334555555 3444557788889999999999998751 23335
Q ss_pred EeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCe
Q 019091 196 LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGV 267 (346)
Q Consensus 196 Lt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~ 267 (346)
|.|+. ..||+-| +-.++.+|=.|++.+... +..+--|++ -+-|. ||++||.--++.+|-.=.+.-++
T Consensus 232 L~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVh---cVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 232 LHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVH---CVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCCceE---EEEECCCCceeeccCCCceEEEEEecCCC
Confidence 77777 6777665 669999999999988763 222223544 24444 78999877666655444444443
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.44 E-value=0.011 Score=57.04 Aligned_cols=173 Identities=15% Similarity=0.172 Sum_probs=110.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEE-----EEEe--CCEEEEEEeeCCEEEEEECCCC
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG-----LTLL--GEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeG-----it~~--g~~LY~ltw~~~~v~V~D~~tl 180 (346)
+-+++.-||+=+.|.. -+.++.+++++-++...... +.|.+ +.-+ ..-+++++..+..+-+.|..+.
T Consensus 24 ~Sv~wn~~g~~lasgs--~dktv~v~n~e~~r~~~~~~----~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGS--FDKTVSVWNLERDRFRKELV----YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred eEEEEcccCceeeecc--cCCceEEEEecchhhhhhhc----ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 6777777776554533 34688999888774333322 22232 2222 3457888888999999999999
Q ss_pred cEEEEEecCCCceeE--EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEE-EEecCCC
Q 019091 181 NKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVW-ANVWQTD 256 (346)
Q Consensus 181 ~~i~ti~~~~peGwG--Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~Ly-aNv~~sn 256 (346)
+.+.++... .|-.- -+|||++..+.|.++.|.+||.+++++..+-+-.. ..||+.+-+ +.+| .++ .-.
T Consensus 98 k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~------e~ne~~w~~~nd~Fflt~-GlG 169 (313)
T KOG1407|consen 98 KCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF------EVNEISWNNSNDLFFLTN-GLG 169 (313)
T ss_pred cEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc------eeeeeeecCCCCEEEEec-CCc
Confidence 999999874 23333 46899999999999999999999999876555432 456765553 2333 333 234
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+|-+..-...|-+..|.. + | .--..|+|+|+|+.|-+.
T Consensus 170 ~v~ILsypsLkpv~si~A---------H--~--snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKA---------H--P--SNCICIEFDPDGRYFATG 207 (313)
T ss_pred eEEEEecccccccccccc---------C--C--cceEEEEECCCCceEeec
Confidence 444444444443333322 1 2 233569999998876554
No 112
>PHA02713 hypothetical protein; Provisional
Probab=97.43 E-value=0.0047 Score=65.02 Aligned_cols=153 Identities=11% Similarity=0.086 Sum_probs=95.2
Q ss_pred eEEEecCCEEEEEcCCCCC---CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee-----------------
Q 019091 109 GLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL----------------- 168 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~---s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~----------------- 168 (346)
+++.. +|+||+-.|..+. +.|..||+.+++-...-+++....+.+++..+++||+.--.
T Consensus 346 ~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 346 SLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred eEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence 55555 6899999885432 46999999999766655666655667788889999997432
Q ss_pred ------CCEEEEEECCCCcE--EEEEecCCCceeEEeeCCCEEEEECC-------CCeEEEEeCCC-CcEEEEEEeccCC
Q 019091 169 ------QKTGFIYDQNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG-------SSMLYQIDPQT-LKVIRKDIVRYKG 232 (346)
Q Consensus 169 ------~~~v~V~D~~tl~~--i~ti~~~~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T-~kvi~~I~V~~~G 232 (346)
.+.+.+||+.+-+- +...+.+ ..+-+++.-++.||+.=| .+.+...||++ .+-.. +....
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~---~~~m~ 500 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL---ITTTE 500 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE---ccccC
Confidence 35699999876544 4444443 234455555678888533 13578999998 56542 21111
Q ss_pred eeeeeceeeEeeCCEEEEEecCCC--eEEEEeCCCCe
Q 019091 233 REVRNLNELEFIKGEVWANVWQTD--CIARISHEDGV 267 (346)
Q Consensus 233 ~pv~~lNELE~~~G~LyaNv~~sn--~I~vID~~TG~ 267 (346)
.+.... -+...+|+|||-=...+ ++-+-||.|++
T Consensus 501 ~~r~~~-~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 501 SRLSAL-HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cccccc-eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 222221 14466899998543333 34445555543
No 113
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.42 E-value=0.0022 Score=65.75 Aligned_cols=209 Identities=13% Similarity=0.078 Sum_probs=135.6
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEE
Q 019091 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v 172 (346)
.+.+++|-+-.+| ..-+.|+++|+=|.|++ =+-.|..||++||+++.+..++.-++-.-..+++..+|.+--.++++
T Consensus 248 ~~~lrtf~gH~k~-Vrd~~~s~~g~~fLS~s--fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 248 RRCLRTFKGHRKP-VRDASFNNCGTSFLSAS--FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred cceehhhhcchhh-hhhhhccccCCeeeeee--cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcE
Confidence 4456666543344 36778888898888888 34599999999999999999998888877777888899999999999
Q ss_pred EEEECCCCcEEEEEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE-eccCCeeeeeceeeEeeCCEEE
Q 019091 173 FIYDQNNLNKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI-VRYKGREVRNLNELEFIKGEVW 249 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~-V~~~G~pv~~lNELE~~~G~Ly 249 (346)
.-+|..+++++.++.... -.-..+-++|++.+.|-.+..+.+++=.+.-.++.|. +...-.|.- + -..+|..+
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~--~--~~P~~~~~ 400 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCL--T--LHPNGKWF 400 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcce--e--cCCCCCee
Confidence 999999999999987532 1222233566666665445577777755544433321 111112211 0 12367788
Q ss_pred EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019091 250 ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
+.--..|.|++..+.. .+.+ +.++.. .|.........+.|+|||.. .++|---+++|==
T Consensus 401 ~aQs~dN~i~ifs~~~-----~~r~-nkkK~f--eGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 401 AAQSMDNYIAIFSTVP-----PFRL-NKKKRF--EGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFW 459 (503)
T ss_pred hhhccCceEEEEeccc-----cccc-CHhhhh--cceeccCceeeEEEcCCCCe-EEeecCCccEEEe
Confidence 8777888888775322 2222 222111 11122234578999999764 4667666666543
No 114
>PHA03098 kelch-like protein; Provisional
Probab=97.40 E-value=0.032 Score=57.67 Aligned_cols=153 Identities=8% Similarity=0.043 Sum_probs=96.8
Q ss_pred eEEEecCCEEEEEcCCCCC----CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee-----CCEEEEEECCC
Q 019091 109 GLLYAENDTLFESTGLYGR----SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNN 179 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~----s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~-----~~~v~V~D~~t 179 (346)
|.+.. ++.+|+..|..+. +.+..||+.+++-...-.++....+.+++..+++||+.--. .+.+.+||+.+
T Consensus 289 ~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 289 GSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred eEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCC
Confidence 55554 5789988775432 36889999999876555555333355677889999998543 35688999876
Q ss_pred CcEE--EEEecCCCceeEEeeCCCEEEEECC-------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE
Q 019091 180 LNKL--EEFTHQMKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA 250 (346)
Q Consensus 180 l~~i--~ti~~~~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya 250 (346)
.+-. ...+.+ ..+-+.+.-++.+|+.-| .+.+..+||.|.+-...-+.. .+.... .....+++||+
T Consensus 368 ~~W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~~-~~~~~~~~iyv 442 (534)
T PHA03098 368 SKWREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP---ISHYGG-CAIYHDGKIYV 442 (534)
T ss_pred CceeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC---ccccCc-eEEEECCEEEE
Confidence 5443 333433 244455556778888644 267999999987764322111 111111 13355788887
Q ss_pred EecC--------CCeEEEEeCCCCe
Q 019091 251 NVWQ--------TDCIARISHEDGV 267 (346)
Q Consensus 251 Nv~~--------sn~I~vID~~TG~ 267 (346)
--.. .+.+.+.|+++++
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCc
Confidence 4321 2358899999985
No 115
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.39 E-value=0.014 Score=56.65 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=107.2
Q ss_pred EEEecCC-E-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019091 110 LLYAEND-T-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 110 L~~~~d~-~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
|.+-+|- + +|.++ -+..+..+|+.+|+++=+..++.+. |+-+. .|+. .++--+++.+++++-+|++++..|
T Consensus 16 LVV~~dskT~v~igS---Hs~~~~avd~~sG~~~We~ilg~Ri--E~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGS---HSGIVIAVDPQSGNLIWEAILGVRI--ECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred EEEecCCceEEEEec---CCceEEEecCCCCcEEeehhhCcee--eeeeEEECCE-EEEEEccCcEEEEEecchhheeee
Confidence 4555554 3 44432 2348899999999999999898876 65555 4665 666778899999999999988887
Q ss_pred ecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCC
Q 019091 187 THQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 187 ~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~ 264 (346)
... .+---.+++|++.+|....+...|.+|+.+..-+=+.+.+. |.-+.. -+...++.||++.- ...|..+.++
T Consensus 90 ~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-~~f~sP--~i~~g~~sly~a~t-~G~vlavt~~ 165 (354)
T KOG4649|consen 90 VILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-GTFVSP--VIAPGDGSLYAAIT-AGAVLAVTKN 165 (354)
T ss_pred eehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-ceeccc--eecCCCceEEEEec-cceEEEEccC
Confidence 652 11222478899999998888899999999988876655543 121111 14456889999884 7788888888
Q ss_pred CCe
Q 019091 265 DGV 267 (346)
Q Consensus 265 TG~ 267 (346)
++-
T Consensus 166 ~~~ 168 (354)
T KOG4649|consen 166 PYS 168 (354)
T ss_pred CCC
Confidence 883
No 116
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.38 E-value=0.013 Score=58.65 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=104.9
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE---eC-CEEEEEEeeCCEEEEEECCCCcEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL---LG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~---~g-~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
--+.|+-||+|+.+.++.| .|.+++..||+....+.-. +++|.. +. .+++.+--.++.+|++........
T Consensus 110 t~~~FshdgtlLATGdmsG--~v~v~~~stg~~~~~~~~e----~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSG--KVLVFKVSTGGEQWKLDQE----VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC 183 (399)
T ss_pred EEEEEccCceEEEecCCCc--cEEEEEcccCceEEEeecc----cCceEEEEecccccEEEeecCCCcEEEEECCCccee
Confidence 4677888899999988766 9999999999887776421 233333 22 456667778899999998888787
Q ss_pred EEEecC-CCceeE-EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019091 184 EEFTHQ-MKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 184 ~ti~~~-~peGwG-Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
+.++-. .|--.| +.||||++.....+.+|.++||+|.+.+.++.-.+ |.+..- +++.. ++.+-...-....+...
T Consensus 184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~-~~~~~-~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 184 KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE-GLELPC-ISLNL-AGSTLTKGNSEGVACGV 260 (399)
T ss_pred eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc-cCcCCc-ccccc-ccceeEeccCCccEEEE
Confidence 877632 333334 89999999997778999999999999988887544 222211 11111 23333222234445556
Q ss_pred eCCCCeEEEEEE
Q 019091 262 SHEDGVVLGWVL 273 (346)
Q Consensus 262 D~~TG~Vv~~I~ 273 (346)
.-.+|||+.-.+
T Consensus 261 ~~~sgKVv~~~n 272 (399)
T KOG0296|consen 261 NNGSGKVVNCNN 272 (399)
T ss_pred ccccceEEEecC
Confidence 666777665554
No 117
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.38 E-value=0.059 Score=52.85 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=136.5
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc------EEEEeccCCCeeEEEEEEeCCEEEEEEe
Q 019091 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK------VEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk------v~~~~~l~~~~FgeGit~~g~~LY~ltw 167 (346)
.-+..+|. +..|..--+|+|.|.+.-+.|+. +.-.+|++.+.+ +.+.+.--.. |---+...++--.+..-
T Consensus 88 nK~haipl-~s~WVMtCA~sPSg~~VAcGGLd--N~Csiy~ls~~d~~g~~~v~r~l~gHtg-ylScC~f~dD~~ilT~S 163 (343)
T KOG0286|consen 88 NKVHAIPL-PSSWVMTCAYSPSGNFVACGGLD--NKCSIYPLSTRDAEGNVRVSRELAGHTG-YLSCCRFLDDNHILTGS 163 (343)
T ss_pred cceeEEec-CceeEEEEEECCCCCeEEecCcC--ceeEEEecccccccccceeeeeecCccc-eeEEEEEcCCCceEecC
Confidence 34566777 78898899999999999998874 588889888762 2222222222 22223333333333344
Q ss_pred eCCEEEEEECCCCcEEEEEecCCCceeE--EeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019091 168 LQKTGFIYDQNNLNKLEEFTHQMKDGWG--LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti~~~~peGwG--Lt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
.+.+....|.++++++..|.--..+=.+ |+|.....|+|-+ +....++|.....-+.+....+. -+|.+.|.
T Consensus 164 GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-----DINsv~ff 238 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-----DINSVRFF 238 (343)
T ss_pred CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-----ccceEEEc
Confidence 5678899999999999999732234334 4564556788876 66888999999888888777542 45667665
Q ss_pred -CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 245 -KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 245 -~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+|.-||+--.+.+.-..|....+-++.+.-. +...-.+.+||+.-|+.||..
T Consensus 239 P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-----------~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 239 PSGDAFATGSDDATCRLYDLRADQELAVYSHD-----------SIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred cCCCeeeecCCCceeEEEeecCCcEEeeeccC-----------cccCCceeEEEcccccEEEee
Confidence 7999999888888999999999988888421 223456899999888877763
No 118
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.37 E-value=0.0072 Score=59.42 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=83.3
Q ss_pred ccCCCeeEEEEEEeC--CE-EEEEEeeCCEEEEEECCCCcEEEEEecC-C--CceeE-EeeCCCEEEEECC-----CCeE
Q 019091 145 QMEGSYFGEGLTLLG--EK-LFQVTWLQKTGFIYDQNNLNKLEEFTHQ-M--KDGWG-LATDGKVLFGSDG-----SSML 212 (346)
Q Consensus 145 ~l~~~~FgeGit~~g--~~-LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~--peGwG-Lt~Dg~~LyvSdG-----s~~l 212 (346)
++|.+ |+|++.+. .+ +..+---..-..|||..+++.+..+..+ . =+|-| +++||++||+++. ...|
T Consensus 2 ~lP~R--gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 2 PLPAR--GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred CCCcc--ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence 45555 56777765 33 3333344556899999999999999753 1 13344 7899999999852 6689
Q ss_pred EEEeCC-CCcEEEEEEecc-CCeeeeeceeeEeeCC-EEEEEec-----------------CCCeEEEEeCCCCeEEEEE
Q 019091 213 YQIDPQ-TLKVIRKDIVRY-KGREVRNLNELEFIKG-EVWANVW-----------------QTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 213 ~vIDp~-T~kvi~~I~V~~-~G~pv~~lNELE~~~G-~LyaNv~-----------------~sn~I~vID~~TG~Vv~~I 272 (346)
-|.|.+ +++.+..+..+. +.+.+. | ..|| .|.|+|. ++..++.+|..||++++..
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~----l-~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELL----L-MPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEE----E-cCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 999998 899888887743 222221 1 1133 4444332 2457999999999999998
Q ss_pred EC
Q 019091 273 LL 274 (346)
Q Consensus 273 ~l 274 (346)
.+
T Consensus 155 ~L 156 (305)
T PF07433_consen 155 EL 156 (305)
T ss_pred ec
Confidence 66
No 119
>PHA02790 Kelch-like protein; Provisional
Probab=97.35 E-value=0.015 Score=59.98 Aligned_cols=151 Identities=12% Similarity=-0.060 Sum_probs=94.4
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee---CCEEEEEECCCCcEEE-
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---QKTGFIYDQNNLNKLE- 184 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~---~~~v~V~D~~tl~~i~- 184 (346)
++... +|+||+..|..+.+++..||+.+++-...-+++....+.+.+..+++||+.-.. .+.+..||+++.+-..
T Consensus 313 ~~v~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 313 SGVPA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred eEEEE-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 44443 689999988656678999999998876666776555566788889999998432 3568889987654433
Q ss_pred -EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC-----CCeE
Q 019091 185 -EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-----TDCI 258 (346)
Q Consensus 185 -ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~-----sn~I 258 (346)
..+.+ ..+-+...-+++||+.=|. +.+.||++.+-.. +.....|.... .+...+|+|||-=.. .+.|
T Consensus 392 ~~m~~~-r~~~~~~~~~~~IYv~GG~--~e~ydp~~~~W~~---~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~v 464 (480)
T PHA02790 392 PSTYYP-HYKSCALVFGRRLFLVGRN--AEFYCESSNTWTL---IDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTI 464 (480)
T ss_pred CCCCCc-cccceEEEECCEEEEECCc--eEEecCCCCcEeE---cCCCCCCcccc-EEEEECCEEEEECCcCCCcccceE
Confidence 22333 2333444456788987553 5678998876642 22111222211 255668899985432 2345
Q ss_pred EEEeCCCCe
Q 019091 259 ARISHEDGV 267 (346)
Q Consensus 259 ~vID~~TG~ 267 (346)
-+-||++++
T Consensus 465 e~Yd~~~~~ 473 (480)
T PHA02790 465 EVYNNRTYS 473 (480)
T ss_pred EEEECCCCe
Confidence 555555554
No 120
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.34 E-value=0.0051 Score=62.05 Aligned_cols=181 Identities=15% Similarity=0.160 Sum_probs=114.9
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEec-----cCCCeeEEEEEEeC---CEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019091 116 DTLFESTGLYGRSSVRRVALETGKVEAINQ-----MEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-----l~~~~FgeGit~~g---~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
+..+-|.+ ++.+|.+|+.-.+-+..... |-...--.|+.... ..+..+.-.+++|.+.|..|++.+-++.
T Consensus 94 D~vIASgS--eD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~ 171 (472)
T KOG0303|consen 94 DCVIASGS--EDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD 171 (472)
T ss_pred CceeecCC--CCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC
Confidence 45666655 78899999866543322221 21111112333321 2244445568999999999999999998
Q ss_pred cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEe---cCCCeEEEEeC
Q 019091 188 HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV---WQTDCIARISH 263 (346)
Q Consensus 188 ~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv---~~sn~I~vID~ 263 (346)
++ +-.-.-++.||..|..+-.+.+|.+|||.+.+++..-.-..+-+|.. .+=..+|.++.+- |....++.-||
T Consensus 172 hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R---aifl~~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 172 HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR---AIFLASGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce---eEEeccCceeeeccccccccceeccCc
Confidence 75 33444567789999888899999999999999987763333223332 1223356666543 22345777777
Q ss_pred CCCeE---EEEEECCchhhhhhhccCCCCceeeEE---EEeCCCCEEEEecCCCCcEEEEE
Q 019091 264 EDGVV---LGWVLLPNLRERLVAAGYNGIDVLNGI---AWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 264 ~TG~V---v~~I~l~~l~~~~~~~~~~~~~vlNGI---A~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
++.+. ..++|. -||| -||+|.+.+|+.||....|.=-+
T Consensus 249 ~nl~eP~~~~elDt-----------------SnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 249 NNLEEPIALQELDT-----------------SNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred ccccCcceeEEecc-----------------CCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 66552 233332 2343 48999999999999999874333
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.32 E-value=0.015 Score=63.04 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=124.9
Q ss_pred CCeEEEEECCCCcEEEEec---cCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCC
Q 019091 127 RSSVRRVALETGKVEAINQ---MEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGK 201 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~---l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~ 201 (346)
...|.+|+.++|-...+.. .-+.+ -.|++.++ +++.+++-.++.+-.+|-++...+++...+ ...+.-......
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~-V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSPAHKGE-VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred CCeEEEEEcccCeeecccccCccccCc-eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 4599999999998777762 22222 36788887 789999999999999999999999999886 334445555667
Q ss_pred EEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhh
Q 019091 202 VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRER 280 (346)
Q Consensus 202 ~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~ 280 (346)
.+.+..++-.|.++|..|.++++...-..+ .+|.+.+- ||+=.+.--++.+|-+-|..||..+.-+-++.
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~---- 618 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS---- 618 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC----
Confidence 777777888999999999999887763221 56778776 67744555578899999999999998886632
Q ss_pred hhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 281 LVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 281 ~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+.--+.|+|.|+.|-.+.-.
T Consensus 619 ----------~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 619 ----------PCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ----------cceeeEECCCCCEEEEEEec
Confidence 23447788888888777665
No 122
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.31 E-value=0.032 Score=60.24 Aligned_cols=194 Identities=11% Similarity=0.099 Sum_probs=120.5
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEE
Q 019091 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.=..+|.++.|..+..|.+ ..+|.+|+.+|++-+++++-+ +..+.... |++..++-.+++.+-+||..+-..+
T Consensus 374 ~dVRsl~vS~d~~~~~Sga---~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGA---GESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred hheeEEEeecCceeeeecC---CCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 3348999997666666643 359999999999999998776 34445554 4556666789999999999999999
Q ss_pred EEEecCCCceeE--EeeCCCEEEEECCCCeEEEEeCC-----CCcEEEEEEeccCCeeeeeceeeEee----CCEEEEEe
Q 019091 184 EEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQ-----TLKVIRKDIVRYKGREVRNLNELEFI----KGEVWANV 252 (346)
Q Consensus 184 ~ti~~~~peGwG--Lt~Dg~~LyvSdGs~~l~vIDp~-----T~kvi~~I~V~~~G~pv~~lNELE~~----~G~LyaNv 252 (346)
.+++.--++=|. ++||++.....-++.+|-++|-. .+...+.+.+... +.+...+++-++ ||++.|--
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc-eEEeccccEEEEEEcCCCcEEEEE
Confidence 999842134455 67899988777778888888721 1111111222210 111111111111 56666555
Q ss_pred cCCCeEEEEeCCCCeEEEE---------------------------------EECCchhhhhhhccCCCCceeeEEEEeC
Q 019091 253 WQTDCIARISHEDGVVLGW---------------------------------VLLPNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~---------------------------------I~l~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
-..|+|.|.=.+|.+---. +|+++|.+.+-.+ +..|++ +-|-|
T Consensus 527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH---dDSvm~-V~F~P 602 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH---DDSVMS-VQFLP 602 (888)
T ss_pred eccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc---cCceeE-EEEcc
Confidence 5677777666666552211 1444444332221 233454 77889
Q ss_pred CCCEEEEecC
Q 019091 300 NRNRIFVTGK 309 (346)
Q Consensus 300 ~~~~LfVTGK 309 (346)
+.+.||-+||
T Consensus 603 ~~~~FFt~gK 612 (888)
T KOG0306|consen 603 KTHLFFTCGK 612 (888)
T ss_pred cceeEEEecC
Confidence 9999999886
No 123
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.31 E-value=0.0087 Score=63.42 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=106.1
Q ss_pred eEEEecCCEEEEEcCCCCC---CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe------eCCEEEEEECCC
Q 019091 109 GLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW------LQKTGFIYDQNN 179 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~---s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw------~~~~v~V~D~~t 179 (346)
|+... +|.||+..|..|. ++|-.||+.+.+-.-.-++...-.+.|++..+++||++-- .-+.+..||+.|
T Consensus 375 ~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 375 GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred eeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 66666 5899999886553 5688999999987666667666778999999999999843 237799999976
Q ss_pred CcE--EEEEecCCCceeEEeeCCCEEEEEC---C---CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE-
Q 019091 180 LNK--LEEFTHQMKDGWGLATDGKVLFGSD---G---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA- 250 (346)
Q Consensus 180 l~~--i~ti~~~~peGwGLt~Dg~~LyvSd---G---s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya- 250 (346)
-+- +...... .-|.|++.-++.||+-= | -++|...||+|.+...--.... +.... -+...++++||
T Consensus 454 ~~W~~~~~M~~~-R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~---~rs~~-g~~~~~~~ly~v 528 (571)
T KOG4441|consen 454 NTWTLIAPMNTR-RSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS---PRSAV-GVVVLGGKLYAV 528 (571)
T ss_pred CceeecCCcccc-cccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc---ccccc-cEEEECCEEEEE
Confidence 554 4444444 56777888899999943 3 3358889999988753321211 11110 13455677775
Q ss_pred ----EecCCCeEEEEeCCCCe
Q 019091 251 ----NVWQTDCIARISHEDGV 267 (346)
Q Consensus 251 ----Nv~~sn~I~vID~~TG~ 267 (346)
+.-..++|-..||++++
T Consensus 529 GG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 529 GGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ecccCccccceeEEcCCCCCc
Confidence 33345678888999886
No 124
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.31 E-value=0.037 Score=54.67 Aligned_cols=159 Identities=10% Similarity=0.142 Sum_probs=109.7
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
|+... +|++|+++.. | .+..+|..+|+.+=+...+. -.+.......++.+|+.+ .++.++.+|.+|++.+-++.
T Consensus 106 ~~~~~-~G~i~~g~~~-g--~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 106 PILGS-DGKIYVGSWD-G--KLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred ceEEe-CCeEEEeccc-c--eEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEe
Confidence 44444 8999999873 3 89999999999988888776 445555666778999998 67999999999999988876
Q ss_pred cCCCceeEEe------eCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEecc----CCe--eeeeceeeEeeCCEEEEEec
Q 019091 188 HQMKDGWGLA------TDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRY----KGR--EVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 188 ~~~peGwGLt------~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~----~G~--pv~~lNELE~~~G~LyaNv~ 253 (346)
.+.+ ..+. .....+|+.. + +..++-+|+++++.+-+..+.. ... .....+..-++++.+|+--+
T Consensus 181 ~~~~--~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~ 258 (370)
T COG1520 181 TPAP--LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY 258 (370)
T ss_pred cCCc--cccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec
Confidence 6421 1211 2345666654 3 6689999999999987754432 111 10111222234455544443
Q ss_pred CCCeEEEEeCCCCeEEEEEECC
Q 019091 254 QTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
...+..+|..+|+.+=..+++
T Consensus 259 -~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 259 -GGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred -CCeEEEEEcCCCceEEEEecc
Confidence 455999999999999888774
No 125
>PHA03098 kelch-like protein; Provisional
Probab=97.28 E-value=0.018 Score=59.54 Aligned_cols=153 Identities=11% Similarity=0.072 Sum_probs=96.4
Q ss_pred eEEEecCCEEEEEcCCCC---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee------CCEEEEEECCC
Q 019091 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------QKTGFIYDQNN 179 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~------~~~v~V~D~~t 179 (346)
+++.. +++||+-.|..+ .+.+.+||+.+++-....+++..-.+.+.+..+++||+.--. .+.+.+||+.+
T Consensus 337 ~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 337 GVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred eEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 45544 589999888542 356889999999876655565444566677889999997542 26789999886
Q ss_pred CcE--EEEEecCCCceeEEeeCCCEEEEECCC---------CeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019091 180 LNK--LEEFTHQMKDGWGLATDGKVLFGSDGS---------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 180 l~~--i~ti~~~~peGwGLt~Dg~~LyvSdGs---------~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
.+- +...+.+ ..|-+.+..++.+|+.-|. +.++.+||++.+-.. +.....|.... .+...+|+|
T Consensus 416 ~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~---~~~~~~~r~~~-~~~~~~~~i 490 (534)
T PHA03098 416 NKWSKGSPLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE---LSSLNFPRINA-SLCIFNNKI 490 (534)
T ss_pred CeeeecCCCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee---CCCCCcccccc-eEEEECCEE
Confidence 544 3333333 2344555556788886551 349999999987643 22211222211 133457888
Q ss_pred EEEecC-----CCeEEEEeCCCCe
Q 019091 249 WANVWQ-----TDCIARISHEDGV 267 (346)
Q Consensus 249 yaNv~~-----sn~I~vID~~TG~ 267 (346)
|+--.. .+.|.+.|+++.+
T Consensus 491 yv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 491 YVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEcCCcCCcccceeEEEeCCCCE
Confidence 873321 4578888888875
No 126
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.27 E-value=0.02 Score=58.32 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=92.2
Q ss_pred EEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEE
Q 019091 110 LLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 110 L~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti 186 (346)
..++||| +|..+....|+..|..+|+++|+..+-...+.....-..+++|++||.+.... ..++++|.++.+... +
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l 316 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V 316 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C
Confidence 4678888 56555555578899999999998554333332222234677888888776433 379999998876633 3
Q ss_pred ecCCCceeEEeeCCCEEEE-ECCC--------CeEEEEeCCCCcEEEEEEeccCCeeeeecee-eEee-CC-EE-EEEec
Q 019091 187 THQMKDGWGLATDGKVLFG-SDGS--------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFI-KG-EV-WANVW 253 (346)
Q Consensus 187 ~~~~peGwGLt~Dg~~Lyv-SdGs--------~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE-LE~~-~G-~L-yaNv~ 253 (346)
.........++|||++|.. +... ..|+++|+++.+.. .+ ...+ .+| ..+. || .| |+...
T Consensus 317 t~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~L--T~~~-----~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 317 VFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RL--TANG-----VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-EC--CCCC-----CcCCeEECCCCCEEEEEEcc
Confidence 3211122368999998744 5432 48999999988753 22 2221 122 2222 45 44 45443
Q ss_pred C-CCeEEEEeCCCCeEEEEEEC
Q 019091 254 Q-TDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 254 ~-sn~I~vID~~TG~Vv~~I~l 274 (346)
. ...+.++|. +|++...+..
T Consensus 389 ~~~~~L~~~~l-~g~~~~~l~~ 409 (419)
T PRK04043 389 GNQSALGIIRL-NYNKSFLFPL 409 (419)
T ss_pred CCcEEEEEEec-CCCeeEEeec
Confidence 3 234777776 4555555543
No 127
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=97.26 E-value=0.023 Score=58.87 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=93.2
Q ss_pred CCEEEEEEe----eCCEEEEEECCCCcEEEEEecCC-Cce-eEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC
Q 019091 159 GEKLFQVTW----LQKTGFIYDQNNLNKLEEFTHQM-KDG-WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 159 g~~LY~ltw----~~~~v~V~D~~tl~~i~ti~~~~-peG-wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
.+.||.++. .....+.+| .++.+....+... ... .-..+||..++.+. +.+..+|.- ++++....+....
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc
Confidence 467887766 778899999 5788888888642 122 35677888888776 899999974 7888777774421
Q ss_pred eeeeeceee-EeeCCEEEEEec-------------CCCeEEEEeCCCCeEEEEEECCchhhhhhh--------------c
Q 019091 233 REVRNLNEL-EFIKGEVWANVW-------------QTDCIARISHEDGVVLGWVLLPNLRERLVA--------------A 284 (346)
Q Consensus 233 ~pv~~lNEL-E~~~G~LyaNv~-------------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~--------------~ 284 (346)
..+++ ++ +..||.+.+-.+ ..|.|+.|| .+|+|+..+++.+....... .
T Consensus 189 ~~~HH--D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 189 YDFHH--DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp E-B-S---EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred ccccc--ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence 22232 22 334676554333 157899999 99999999988665421111 0
Q ss_pred cCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 285 GYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 285 ~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+..+..-.|+|.|++..+.|.|+.++=..|+.|..
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~ 300 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDY 300 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceEEEEEEC
Confidence 11334578999999999999999999999999983
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.24 E-value=0.056 Score=56.27 Aligned_cols=187 Identities=14% Similarity=0.068 Sum_probs=118.3
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019091 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
.|+..-| +|..-.+|+|+- .| .+-.|..|| +.-+-++.+++|+.. |..-++.-+..||+.|-.+..+.= ..+
T Consensus 285 aH~ggv~--~L~~lr~GtllS-Gg--KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G-t~~ 357 (626)
T KOG2106|consen 285 AHDGGVF--SLCMLRDGTLLS-GG--KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG-TLE 357 (626)
T ss_pred ecCCceE--EEEEecCccEee-cC--ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe-eec
Confidence 6888887 777778888875 45 556999999 555667778887543 334344444559999877655432 222
Q ss_pred -CCcEEEEEecCCCceeEEe-eCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecC
Q 019091 179 -NLNKLEEFTHQMKDGWGLA-TDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (346)
Q Consensus 179 -tl~~i~ti~~~~peGwGLt-~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~ 254 (346)
.+.++-.. ++ .|=|||+ +..+-+|++-| +..+..++ ..+++=+..+.+..+. +.+. -| +.|.-..
T Consensus 358 ~~f~~~v~g-h~-delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~------~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 358 NGFTLTVQG-HG-DELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAEC------ADFHPSG-VVAVGTA 426 (626)
T ss_pred CCceEEEEe-cc-cceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeE------eeccCcc-eEEEeec
Confidence 23332222 22 3778864 34455566554 88999999 6777777777663332 2232 24 4444445
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+..-.|+|.+| +.+-++.. .+..++.++|+|+|..|-|.-+ .|.||--++
T Consensus 427 ~G~w~V~d~e~-~~lv~~~~-------------d~~~ls~v~ysp~G~~lAvgs~-d~~iyiy~V 476 (626)
T KOG2106|consen 427 TGRWFVLDTET-QDLVTIHT-------------DNEQLSVVRYSPDGAFLAVGSH-DNHIYIYRV 476 (626)
T ss_pred cceEEEEeccc-ceeEEEEe-------------cCCceEEEEEcCCCCEEEEecC-CCeEEEEEE
Confidence 77788999999 55555543 1346899999999998877654 466655544
No 129
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.24 E-value=0.046 Score=53.63 Aligned_cols=114 Identities=14% Similarity=0.203 Sum_probs=74.2
Q ss_pred EEEEEE-eCCEEEEEEeeC------CEEEEEECCCCcEEEEEecC-----------------CCceeEEeeCCCEEEEEC
Q 019091 152 GEGLTL-LGEKLFQVTWLQ------KTGFIYDQNNLNKLEEFTHQ-----------------MKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 152 geGit~-~g~~LY~ltw~~------~~v~V~D~~tl~~i~ti~~~-----------------~peGwGLt~Dg~~LyvSd 207 (346)
.|||+. .++.+|++.+.. +.|+.||++ ++.+.+++++ .-||.++++||++||+.-
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 689999 678999999999 999999987 8887777421 248888999999988853
Q ss_pred -CC---------------CeEEEEeCCC-CcEEEEEEeccCC----eeeeeceeeEee-CCEEEE---E----ecCCCeE
Q 019091 208 -GS---------------SMLYQIDPQT-LKVIRKDIVRYKG----REVRNLNELEFI-KGEVWA---N----VWQTDCI 258 (346)
Q Consensus 208 -Gs---------------~~l~vIDp~T-~kvi~~I~V~~~G----~pv~~lNELE~~-~G~Lya---N----v~~sn~I 258 (346)
+. -.|..+|+.+ .+..+.....-+. ..-..+.|+.+. |++++| . .-....|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 21 2578888877 4344443332211 012234455554 456665 1 1124468
Q ss_pred EEEeCCCC
Q 019091 259 ARISHEDG 266 (346)
Q Consensus 259 ~vID~~TG 266 (346)
..||....
T Consensus 246 ~~v~l~~a 253 (326)
T PF13449_consen 246 YRVDLSDA 253 (326)
T ss_pred EEEEcccc
Confidence 88887654
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.05 Score=55.96 Aligned_cols=189 Identities=12% Similarity=0.049 Sum_probs=126.3
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEE
Q 019091 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.-.+-+.|+|.-.|...+|+.+.=+|..+|-++...+..+.+..-| +-.-+++.|.......-...-.+.||..+.++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 3346778888778888889888777777787888777777664322 223344556634444445577899999887765
Q ss_pred EEEe-cC----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecCCC
Q 019091 184 EEFT-HQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQTD 256 (346)
Q Consensus 184 ~ti~-~~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~sn 256 (346)
+-=+ ++ .-+-..+++|++.|.+.=-.+.|+++-..|++.+.++++. |.- -++.+. +| +||+.+. +.
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v----~~~~fsSdsk~l~~~~~-~G 366 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVV----SDFTFSSDSKELLASGG-TG 366 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEE----eeEEEecCCcEEEEEcC-Cc
Confidence 5322 22 2255678999996555333789999999999999999883 332 234444 45 5777765 56
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019091 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
.|++.|..+..|+.+.--.+... =--||.++++. +|-||-+-+-
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~------------gts~~~S~ng~-ylA~GS~~Gi 410 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVH------------GTSLCISLNGS-YLATGSDSGI 410 (514)
T ss_pred eEEEEecCCcceEEEEeecCccc------------eeeeeecCCCc-eEEeccCcce
Confidence 99999999999998874433221 02256666655 6667766653
No 131
>PLN02153 epithiospecifier protein
Probab=97.11 E-value=0.053 Score=52.95 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=90.5
Q ss_pred CCEEEEEcCCCCC---CeEEEEECCCCcEEEEecc-----CCCeeEEEEEEeCCEEEEEEeeC-----------CEEEEE
Q 019091 115 NDTLFESTGLYGR---SSVRRVALETGKVEAINQM-----EGSYFGEGLTLLGEKLFQVTWLQ-----------KTGFIY 175 (346)
Q Consensus 115 d~~LyeStGlyg~---s~V~~iDl~Tgkv~~~~~l-----~~~~FgeGit~~g~~LY~ltw~~-----------~~v~V~ 175 (346)
++.||+-.|..+. +.+.+||+.+.+-....++ +....+.+++..+++||+.--.+ +.+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 5789988775333 4789999999875543333 33334667788899999873321 468999
Q ss_pred ECCCCcEEEEEec-----CCCceeEEeeCCCEEEEEC---------C-----CCeEEEEeCCCCcEEEEEEeccCCeeee
Q 019091 176 DQNNLNKLEEFTH-----QMKDGWGLATDGKVLFGSD---------G-----SSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (346)
Q Consensus 176 D~~tl~~i~ti~~-----~~peGwGLt~Dg~~LyvSd---------G-----s~~l~vIDp~T~kvi~~I~V~~~G~pv~ 236 (346)
|+++.+-.. ++. ....|-+++.-++++|+-= | .+.|+++|+++.+-...-..+....+..
T Consensus 165 d~~~~~W~~-l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 165 NIADGKWVQ-LPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred ECCCCeEee-CCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 998765432 221 1234445554455666631 1 3689999999987663222222111211
Q ss_pred eceeeEeeCCEEEEEec--------------CCCeEEEEeCCCCe
Q 019091 237 NLNELEFIKGEVWANVW--------------QTDCIARISHEDGV 267 (346)
Q Consensus 237 ~lNELE~~~G~LyaNv~--------------~sn~I~vID~~TG~ 267 (346)
. ......+++||+--- ..|+|.+.|+++.+
T Consensus 244 ~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 244 V-FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred e-eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 1 123345677776322 13689999999886
No 132
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.11 E-value=0.032 Score=53.70 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=94.4
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE--EEEEecC--CC
Q 019091 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK--LEEFTHQ--MK 191 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~--i~ti~~~--~p 191 (346)
..+++|+| |+ .+|+.|.+.||+-.+.++-+.... -.+.+..++=+.+.--...|-+||.++.+. +.+|+-. .-
T Consensus 10 ~viLvsA~-YD-hTIRfWqa~tG~C~rTiqh~dsqV-NrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 10 PVILVSAG-YD-HTIRFWQALTGICSRTIQHPDSQV-NRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred ceEEEecc-Cc-ceeeeeehhcCeEEEEEecCccce-eeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCce
Confidence 36788888 44 699999999999999998765432 124444444444444456788888887764 7777643 12
Q ss_pred ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEE
Q 019091 192 DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVL 269 (346)
Q Consensus 192 eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv 269 (346)
.-.|+-.||+++|.+-.+.++.++|......-+...... .+|++-.. .++|++.. ++..|-+=|..+....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s------pVn~vvlhpnQteLis~d-qsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS------PVNTVVLHPNQTELISGD-QSGNIRVWDLGENSCT 159 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCC------CcceEEecCCcceEEeec-CCCcEEEEEccCCccc
Confidence 456788899999998778899999998865555444421 23443332 24666654 3555666666665443
No 133
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.10 E-value=0.028 Score=58.17 Aligned_cols=178 Identities=13% Similarity=0.077 Sum_probs=106.7
Q ss_pred CCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 103 PRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 103 ~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
+.-|.+-+++.+.+ ..++|-| +..+.+...|-+++.-.- +=+| .-+..+++.+.+.|.....+-|||..+.
T Consensus 320 pskyledfa~~~Gd~ia~VSRG-----kaFi~~~~~~~~iqv~~~~~VrY--~r~~~~~e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 320 PSKYLEDFAVVNGDYIALVSRG-----KAFIMRPWDGYSIQVGKKGGVRY--RRIQVDPEGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred HHHhhhhhccCCCcEEEEEecC-----cEEEECCCCCeeEEcCCCCceEE--EEEccCCcceEEeccCCceEEEEecCCc
Confidence 33454555665433 3567766 556666665544322111 1111 1233345667777888889999999888
Q ss_pred cEEEEEe-cCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE--EEE--EecC
Q 019091 181 NKLEEFT-HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE--VWA--NVWQ 254 (346)
Q Consensus 181 ~~i~ti~-~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~--Lya--Nv~~ 254 (346)
+...-.+ .+.-+..++++||+.+.++|..-+|++||.+|+++.- |.=.. -..+-+..+. |++ .|+ .-+.
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~-idkS~----~~lItdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL-IDKSE----YGLITDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE-ecccc----cceeEEEEEcCCceeEEEecCccee
Confidence 7544443 3445888999999999999988899999999988631 11111 1222334444 344 222 3344
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019091 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
+..|-+-|.++|++...-.- . ..=..-|||||++.||-
T Consensus 468 tq~Iklydm~~~Kiy~vTT~-t-------------a~DfsPaFD~d~ryLYf 505 (668)
T COG4946 468 TQSIKLYDMDGGKIYDVTTP-T-------------AYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeeEEEEecCCCeEEEecCC-c-------------ccccCcccCCCCcEEEE
Confidence 66788999999997543211 0 01123478888887773
No 134
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.023 Score=55.70 Aligned_cols=132 Identities=14% Similarity=0.233 Sum_probs=88.8
Q ss_pred CCcEEEEeccCCCeeEEEEEEeC---CEEEEEEeeCCEEEEEECCCCcEEEEEecC---CCceeE-EeeCCCEEEEECC-
Q 019091 137 TGKVEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWG-LATDGKVLFGSDG- 208 (346)
Q Consensus 137 Tgkv~~~~~l~~~~FgeGit~~g---~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---~peGwG-Lt~Dg~~LyvSdG- 208 (346)
.||++..+.++.+ |+|++.+. ..+..+---..-.+|||+++.+...++.-+ .=+|-| +++||.+||.+++
T Consensus 57 aGk~v~~~~lpaR--~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 57 AGKIVFATALPAR--GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred CCceeeeeecccc--cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 5889999999887 67788764 456666555566899999999998888753 125556 7999999999863
Q ss_pred ----CCeEEEEeC-CCCcEEEEEEecc-CCeeeeeceeeEeeCCEEE-EEec-----------------CCCeEEEEeCC
Q 019091 209 ----SSMLYQIDP-QTLKVIRKDIVRY-KGREVRNLNELEFIKGEVW-ANVW-----------------QTDCIARISHE 264 (346)
Q Consensus 209 ----s~~l~vIDp-~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~Ly-aNv~-----------------~sn~I~vID~~ 264 (346)
..-|-+.|. +-|+-+..+.... ..+.+. -..||+.. +++. +...++.+|.+
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~-----lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVT-----LMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeE-----EecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 336777774 3455555555422 112211 12344422 2222 35679999999
Q ss_pred CCeEEEEEECC
Q 019091 265 DGVVLGWVLLP 275 (346)
Q Consensus 265 TG~Vv~~I~l~ 275 (346)
||.++.+.-++
T Consensus 210 tG~liekh~Lp 220 (366)
T COG3490 210 TGNLIEKHTLP 220 (366)
T ss_pred ccchhhhccCc
Confidence 99999998663
No 135
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.0061 Score=60.37 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=132.1
Q ss_pred ccCCCCCCCCceeeeEEEEEEecCCCCccee---EEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEE
Q 019091 79 IRFPGVDQSPSIYTIQVVNEFPHDPRAFTQG---LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGL 155 (346)
Q Consensus 79 ~~~~~~~~~~~~~t~~Vv~t~phd~~~FTqG---L~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGi 155 (346)
.+..+.+..++++.++.=.-+..=.++-|+| |.|+.|+.-..|++ -+..+++--+++||.+....=...+..|..
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s--fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS--FDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc--ccceEEEeccccchhHHHhcCccccccceE
Confidence 3343444455554443321111112334455 57888886555666 566889889999998777654444444433
Q ss_pred -EEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEe-----e-CCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019091 156 -TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA-----T-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 156 -t~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt-----~-Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
+.+|+++.- .-.++.|-|.+.+|.+-+.+|... ++-+.+. | +-.+++|.|.+|+|++++-+ ++++++..-
T Consensus 356 ft~dG~~iis-aSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS 432 (508)
T KOG0275|consen 356 FTDDGHHIIS-ASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS 432 (508)
T ss_pred EcCCCCeEEE-ecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeecc
Confidence 334555544 445799999999999999999865 2333322 2 46789999999999999975 789999888
Q ss_pred ccC-Ceeeeecee-eEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019091 229 RYK-GREVRNLNE-LEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 229 ~~~-G~pv~~lNE-LE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
|.. |.. ++|. |...+..+|+-- .+..++-....+|+...++++.. .-+-|||..|.++.
T Consensus 433 GkREgGd--Fi~~~lSpkGewiYcig-ED~vlYCF~~~sG~LE~tl~VhE-------------kdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 433 GKREGGD--FINAILSPKGEWIYCIG-EDGVLYCFSVLSGKLERTLPVHE-------------KDVIGLTHHPHQNL 493 (508)
T ss_pred CCccCCc--eEEEEecCCCcEEEEEc-cCcEEEEEEeecCceeeeeeccc-------------ccccccccCcccch
Confidence 752 332 3344 333344577653 36678888889999999997732 12468888887664
No 136
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.08 E-value=0.07 Score=59.17 Aligned_cols=218 Identities=17% Similarity=0.141 Sum_probs=139.6
Q ss_pred CCCceeeeEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEE
Q 019091 86 QSPSIYTIQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLF 163 (346)
Q Consensus 86 ~~~~~~t~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY 163 (346)
.......++++..+- |+..- +-+..+||+.+++|.+ -+++|.+||..|.+.+..+.-. .-+.-|++.+. ++.+
T Consensus 112 ~~~~vE~wk~~~~l~~H~~DV--~Dv~Wsp~~~~lvS~s--~DnsViiwn~~tF~~~~vl~~H-~s~VKGvs~DP~Gky~ 186 (942)
T KOG0973|consen 112 GAKNVESWKVVSILRGHDSDV--LDVNWSPDDSLLVSVS--LDNSVIIWNAKTFELLKVLRGH-QSLVKGVSWDPIGKYF 186 (942)
T ss_pred cccccceeeEEEEEecCCCcc--ceeccCCCccEEEEec--ccceEEEEccccceeeeeeecc-cccccceEECCccCee
Confidence 344555788888875 66555 7899999999999998 4569999999999766665432 33457788886 6677
Q ss_pred EEEeeCCEEEEEECCCCcEEEEEecC---CCce---e--EEeeCCCEEEEEC----CCCeEEEEeCCCCcEEEEEEeccC
Q 019091 164 QVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDG---W--GLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 164 ~ltw~~~~v~V~D~~tl~~i~ti~~~---~peG---w--GLt~Dg~~LyvSd----Gs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
...-.++++.|+++.++...++|.-+ .+.. . .-+|||++|-+.+ +...+.+|+-.|-+.-..+.-...
T Consensus 187 ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~ 266 (942)
T KOG0973|consen 187 ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA 266 (942)
T ss_pred eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC
Confidence 77788999999999999999988632 1111 1 1378999998865 377999999887765444333222
Q ss_pred Ceeeeecee--eEee--CC------EEE--EEe-cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEe
Q 019091 232 GREVRNLNE--LEFI--KG------EVW--ANV-WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWD 298 (346)
Q Consensus 232 G~pv~~lNE--LE~~--~G------~Ly--aNv-~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d 298 (346)
+..+-..|- +|-. || ..| +++ -++.+|+|=.+..-+-+--| +.. .+...+-++|+
T Consensus 267 p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi-----------~~l-f~~SI~DmsWs 334 (942)
T KOG0973|consen 267 PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI-----------HNL-FNKSIVDMSWS 334 (942)
T ss_pred ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh-----------hhh-hcCceeeeeEc
Confidence 222222121 1101 11 011 222 22334555444444422221 100 12234558999
Q ss_pred CCCCEEEEecCCCCcEEEEEEee
Q 019091 299 SNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 299 ~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
|||-.||+. -+.++|+-+++.+
T Consensus 335 pdG~~Lfac-S~DGtV~~i~Fee 356 (942)
T KOG0973|consen 335 PDGFSLFAC-SLDGTVALIHFEE 356 (942)
T ss_pred CCCCeEEEE-ecCCeEEEEEcch
Confidence 999999976 4889999999964
No 137
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=97.02 E-value=0.027 Score=53.82 Aligned_cols=135 Identities=16% Similarity=0.241 Sum_probs=90.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE------------EEEEEeCCEEEEE--Eee-CC--
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV--TWL-QK-- 170 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg------------eGit~~g~~LY~l--tw~-~~-- 170 (346)
.|-.+. +|.||--.. +.+.|.++|+.++++.++..|+..-|. .-++.+.+-||+. +.. ++
T Consensus 72 tG~vVY-ngslYY~~~--~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~i 148 (250)
T PF02191_consen 72 TGHVVY-NGSLYYNKY--NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNI 148 (250)
T ss_pred CCeEEE-CCcEEEEec--CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcE
Confidence 356666 477776644 788999999999999988888765444 5577777778876 333 32
Q ss_pred EEEEEECCCCcEEEEEecC-----CCceeEEeeCCCEEEEECC-----CCeEEEEeCCCCcEEEEEEeccCCeeeeecee
Q 019091 171 TGFIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG-----SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~-----~peGwGLt~Dg~~LyvSdG-----s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE 240 (346)
.+..+|+++|++..+..+. ..+..-+| +.||+.+. +.--+.+|+.|.+.. .+.+.-. ++...+..
T Consensus 149 vvskld~~tL~v~~tw~T~~~k~~~~naFmvC---GvLY~~~s~~~~~~~I~yafDt~t~~~~-~~~i~f~-~~~~~~~~ 223 (250)
T PF02191_consen 149 VVSKLDPETLSVEQTWNTSYPKRSAGNAFMVC---GVLYATDSYDTRDTEIFYAFDTYTGKEE-DVSIPFP-NPYGNISM 223 (250)
T ss_pred EEEeeCcccCceEEEEEeccCchhhcceeeEe---eEEEEEEECCCCCcEEEEEEECCCCcee-ceeeeec-cccCceEe
Confidence 2466999999999999763 12222244 68888763 224478899988775 3444321 23334445
Q ss_pred eEee--CCEEEE
Q 019091 241 LEFI--KGEVWA 250 (346)
Q Consensus 241 LE~~--~G~Lya 250 (346)
|.|- |.+||+
T Consensus 224 l~YNP~dk~LY~ 235 (250)
T PF02191_consen 224 LSYNPRDKKLYA 235 (250)
T ss_pred eeECCCCCeEEE
Confidence 6555 678886
No 138
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=96.92 E-value=0.017 Score=58.24 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCC----Ce--EEEE
Q 019091 189 QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQT----DC--IARI 261 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s----n~--I~vI 261 (346)
+.|-|..+...|+.||++|.==-|++|||+..+ ...+....+|+|+.++|.|..+ +|.||-|..-+ .+ ..+.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~-a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL-AELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCc-ceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 357777777778899999988889999999877 2233333479999999999887 47788766433 11 1122
Q ss_pred eC-CCCeEEEEEECCc-hhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 262 SH-EDGVVLGWVLLPN-LRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 262 D~-~TG~Vv~~I~l~~-l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
.- .+|++. ++|-.. -...+. .....+||+|.+||++.+.++-
T Consensus 194 ~g~~~GRl~-~YD~~tK~~~VLl----d~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 194 EGDPTGRLF-RYDPSTKVTKVLL----DGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred cCCCccceE-EecCcccchhhhh----hcccccccccCCCCCCEEEEEe
Confidence 21 455533 333211 111111 2345789999999999776663
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.26 Score=48.47 Aligned_cols=199 Identities=19% Similarity=0.193 Sum_probs=109.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
.-.+|.++.+.|.+ |+ +..|+++|+.+++......-+... ..+... .+.+....| ++++-++|+..-....+
T Consensus 58 L~c~F~d~~~~~~G-~~--dg~vr~~Dln~~~~~~igth~~~i--~ci~~~~~~~~vIsgsW-D~~ik~wD~R~~~~~~~ 131 (323)
T KOG1036|consen 58 LDCAFADESTIVTG-GL--DGQVRRYDLNTGNEDQIGTHDEGI--RCIEYSYEVGCVISGSW-DKTIKFWDPRNKVVVGT 131 (323)
T ss_pred eeeeccCCceEEEe-cc--CceEEEEEecCCcceeeccCCCce--EEEEeeccCCeEEEccc-CccEEEEeccccccccc
Confidence 45566665677766 43 349999999999754333322221 122222 344444445 68999999998777777
Q ss_pred EecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEE---EeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEe
Q 019091 186 FTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD---IVRYKGREVRNLNELEFIKGEVWANVWQTDCIARIS 262 (346)
Q Consensus 186 i~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I---~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID 262 (346)
+..+ .-=+.++-.|++|.|.-....+.+.|..+++.--.. .+...-+-+. + +.+++=||.---...|+|=+
T Consensus 132 ~d~~-kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~----~-~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 132 FDQG-KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA----L-VPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred cccC-ceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE----E-ecCCCceEEEeecceEEEEc
Confidence 7765 344456777999999665679999999887652211 1111001111 1 11444444433344444443
Q ss_pred CCCCeEE--EEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 263 HEDGVVL--GWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 263 ~~TG~Vv--~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
.++-+-. ..+.+ .+-.. .+.+....-..|.|||.|- ...|+||...+.+--=++.+
T Consensus 206 ~d~s~~~~skkyaF-kCHr~-~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAF-KCHRL-SEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred cCCchHHhhhceeE-Eeeec-ccCCceEEEEeceeEeccc-cceEEecCCCceEEEccCcc
Confidence 3333111 11111 11000 0001111224599999998 66788999888876666554
No 140
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.013 Score=57.36 Aligned_cols=115 Identities=17% Similarity=0.303 Sum_probs=80.3
Q ss_pred eEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE-EecCCCeEEEEeCCCCe-EEE
Q 019091 194 WGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA-NVWQTDCIARISHEDGV-VLG 270 (346)
Q Consensus 194 wGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya-Nv~~sn~I~vID~~TG~-Vv~ 270 (346)
...+||.+.||+ .|.-..|..++. +++++++|+... ++.+..+||++|-.|| .......+.+|-.+.+. ++.
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g----~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTG----FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEec-CCceEEEecccc----cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 344567889998 567778999996 599999999954 3444459999887776 55556667666555542 221
Q ss_pred ----EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC-cEEEEEEee
Q 019091 271 ----WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP-KLYEINLRE 321 (346)
Q Consensus 271 ----~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp-~l~ev~l~~ 321 (346)
.+.+... ...+.-+.|+||||++++|||+-..-| .||+++..|
T Consensus 166 ~~~~~i~L~~~--------~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 166 AKVQKIPLGTT--------NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred ccceEEecccc--------CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 2222111 112567899999999999999988887 688888543
No 141
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.85 E-value=0.026 Score=57.39 Aligned_cols=201 Identities=12% Similarity=0.130 Sum_probs=133.5
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-c-CCCeeEEEEEEeCCEEEEEEeeCCE
Q 019091 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-M-EGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l-~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
+....||+....-.+.-+..|||.=+++.+ -+-.+..||++-. ++.... + .+...-..++.+|+.++.++ .+.+
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs--~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~ 377 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGS--PDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKK 377 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecC--CCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEe-cccc
Confidence 445566665222224456668896666655 3458999999854 333332 1 24455677888999988887 6788
Q ss_pred EEEEECCCCcEEEEEecCC-CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC---E
Q 019091 172 GFIYDQNNLNKLEEFTHQM-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG---E 247 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~~-peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G---~ 247 (346)
+..|+..++...+-+..+. -.-..++.||+.+.+.-....++.+|.+..+++++-.=...|+-+- =.+.+| .
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI----rSCFgg~~~~ 453 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII----RSCFGGGNDK 453 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE----EeccCCCCcc
Confidence 9999999888877676541 2334578899988887789999999998666554433222222111 112232 3
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019091 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
..|.--.++.|.+=+-.+|+.++.+.=. ...-|.+||+|...+.|-.+...+++-
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~LsGH-------------s~~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLSGH-------------SKTVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeecCC-------------cceeeEEecCCCCHHHhhccCCCCeEE
Confidence 3344445677999999999999888321 125699999999999998888877754
No 142
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.84 E-value=0.011 Score=56.57 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=64.7
Q ss_pred eEEEecCC-EEEEEcCCCCCCeEEEEE--CCCCcEEEEe---ccC-----CCeeEEEEEEeC-CEEEEEEeeCCEEEEEE
Q 019091 109 GLLYAEND-TLFESTGLYGRSSVRRVA--LETGKVEAIN---QME-----GSYFGEGLTLLG-EKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 109 GL~~~~d~-~LyeStGlyg~s~V~~iD--l~Tgkv~~~~---~l~-----~~~FgeGit~~g-~~LY~ltw~~~~v~V~D 176 (346)
||+.+-|. ++|....+ .-+|-.|| ..||.+.++- ++. +.+++.|++++. +.||+++|..++|+.+|
T Consensus 162 gl~Wd~d~K~fY~iDsl--n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSL--NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred cccccccCcEEEEEccC--ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 55555333 45655443 23564455 7787654432 221 356788999975 78999999999999999
Q ss_pred CCCCcEEEEEecCCCceeEEeeCCC---EEEEEC
Q 019091 177 QNNLNKLEEFTHQMKDGWGLATDGK---VLFGSD 207 (346)
Q Consensus 177 ~~tl~~i~ti~~~~peGwGLt~Dg~---~LyvSd 207 (346)
+.|++.+.+|..+.+.=--.+.-|+ .+|++-
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9999999999876433333444454 678753
No 143
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.83 E-value=0.073 Score=52.37 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=42.0
Q ss_pred CCEEEEEecCCCeEEEEeCCCC-eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019091 245 KGEVWANVWQTDCIARISHEDG-VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG-~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
.|.+++..|....|..++.+++ ++...-.+- . ....-|-+||..|||. |||+--.-++||+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~-------~~~~r~~~v~~~pDG~-Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL---G-------GFGGRPRDVAQGPDGA-LYVSDDSDGKIYR 331 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEEC---T-------TSSS-EEEEEEETTSE-EEEEE-TTTTEEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEcc---c-------cCCCCceEEEEcCCCe-EEEEECCCCeEeC
Confidence 6789999999999999999854 555554431 1 1122578999999855 5555448888885
No 144
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.83 E-value=0.036 Score=54.92 Aligned_cols=115 Identities=19% Similarity=0.284 Sum_probs=76.0
Q ss_pred EEEEEeCCE-EEEE---------EeeCCE---EEEEECCCCcEEEE-EecCCCceeEEeeCCCEEEEEC-CCCeEEEEeC
Q 019091 153 EGLTLLGEK-LFQV---------TWLQKT---GFIYDQNNLNKLEE-FTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDP 217 (346)
Q Consensus 153 eGit~~g~~-LY~l---------tw~~~~---v~V~D~~tl~~i~t-i~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp 217 (346)
-|++..+++ -|+. -|++++ +.|+|..+.+++.+ +. +|++-- .-+++||++| |..+|..+|+
T Consensus 155 NGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLs--mPhSPR--WhdgrLwvldsgtGev~~vD~ 230 (335)
T TIGR03032 155 NGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLS--MPHSPR--WYQGKLWLLNSGRGELGYVDP 230 (335)
T ss_pred cceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCcc--CCcCCc--EeCCeEEEEECCCCEEEEEcC
Confidence 356665544 5643 255543 78889888877653 22 123111 1378999999 7999999999
Q ss_pred CCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCC------------------e-EEEEeCCCCeEEEEEECCch
Q 019091 218 QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTD------------------C-IARISHEDGVVLGWVLLPNL 277 (346)
Q Consensus 218 ~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn------------------~-I~vID~~TG~Vv~~I~l~~l 277 (346)
+|++...-..+ .|.|.+ |.+.++.++|..-+-. | |.|||.+||.+++++.+.+.
T Consensus 231 ~~G~~e~Va~v--pG~~rG----L~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~ 303 (335)
T TIGR03032 231 QAGKFQPVAFL--PGFTRG----LAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGV 303 (335)
T ss_pred CCCcEEEEEEC--CCCCcc----cceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCc
Confidence 98877655555 345544 6666556666543311 3 89999999999999987443
No 145
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.82 E-value=0.16 Score=50.62 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=106.1
Q ss_pred eEEEecCCE--EE-EEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE-EEEEEeCCEEEEEEeeC----------CEEEE
Q 019091 109 GLLYAENDT--LF-ESTGLYGRSSVRRVALETGKVEAINQMEGSYFG-EGLTLLGEKLFQVTWLQ----------KTGFI 174 (346)
Q Consensus 109 GL~~~~d~~--Ly-eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg-eGit~~g~~LY~ltw~~----------~~v~V 174 (346)
++.++|||+ +| ++.|..+...|+++|++||+.+... ++...|. .+-+.+++.+|-..+.+ +.|+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 567788884 33 4566345578999999999876543 2222222 22333445666665443 45788
Q ss_pred EECCCCcEEEEEecC---CCc---eeEEeeCCCEEEE-EC-C-C-CeEEEEeCCCC----cEEEEEEeccCCeeeeecee
Q 019091 175 YDQNNLNKLEEFTHQ---MKD---GWGLATDGKVLFG-SD-G-S-SMLYQIDPQTL----KVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 175 ~D~~tl~~i~ti~~~---~pe---GwGLt~Dg~~Lyv-Sd-G-s-~~l~vIDp~T~----kvi~~I~V~~~G~pv~~lNE 240 (346)
.+..|...-...=++ .+. +...+.|+++|++ +. + + +.++++|..+. ...+.+.....|.. ..
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~----~~ 282 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE----YY 282 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E----EE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE----EE
Confidence 887766443222221 123 4557899999987 33 4 5 79999999874 33444444333332 12
Q ss_pred eEeeCCEEEE-EecC--CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019091 241 LEFIKGEVWA-NVWQ--TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 241 LE~~~G~Lya-Nv~~--sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
++..++.+|+ ++.. ...|+.+|.++.....+..+ +. .+ .....+.++... ++.|+++-. -+-.-+|
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~--l~----~~--~~~~~l~~~~~~--~~~Lvl~~~-~~~~~~l 351 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV--LI----PE--DEDVSLEDVSLF--KDYLVLSYR-ENGSSRL 351 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE--EE--------SSSEEEEEEEEE--TTEEEEEEE-ETTEEEE
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccccceeE--Ec----CC--CCceeEEEEEEE--CCEEEEEEE-ECCccEE
Confidence 5556788775 5543 24688888887763111110 01 00 123477777776 345555433 2334444
Q ss_pred EEee
Q 019091 318 NLRE 321 (346)
Q Consensus 318 ~l~~ 321 (346)
++..
T Consensus 352 ~v~~ 355 (414)
T PF02897_consen 352 RVYD 355 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 146
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.80 E-value=0.14 Score=50.85 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=62.1
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEE-ECCC-----CcEEEEe-ccCC-----CeeEEEEEEeC-CEEEEEEee---
Q 019091 105 AFTQGLLYAENDTLFESTGLYGRSSVRRV-ALET-----GKVEAIN-QMEG-----SYFGEGLTLLG-EKLFQVTWL--- 168 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~i-Dl~T-----gkv~~~~-~l~~-----~~FgeGit~~g-~~LY~ltw~--- 168 (346)
.+..||++.++| ||+++. ..|.++ |.+. ++...-+ .++. ..+..|++... ++||++.-.
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~----~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~ 146 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATP----PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLA 146 (367)
T ss_pred CCccceeEecCC-EEEeCC----CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCC
Confidence 345799999888 999854 478877 4432 1211111 2222 33455666643 589986551
Q ss_pred ----------------CCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECC-CCeEEEEe
Q 019091 169 ----------------QKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDG-SSMLYQID 216 (346)
Q Consensus 169 ----------------~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdG-s~~l~vID 216 (346)
.+.++.+|+++.+ +..+..+ .|.|.+++++|+ ||++|. ......++
T Consensus 147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 147 SKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT 211 (367)
T ss_pred ceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence 2579999998654 3455555 356666777664 577774 43444333
No 147
>smart00284 OLF Olfactomedin-like domains.
Probab=96.80 E-value=0.13 Score=49.46 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=87.7
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE------------EEEEEeCCEEEEE--Eee-CC-E
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV--TWL-QK-T 171 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg------------eGit~~g~~LY~l--tw~-~~-~ 171 (346)
.|..+. +|.||.--. +...|.++|+.++++..+..++..-|. .-++++.+-||+. +.. ++ .
T Consensus 77 tG~VVY-ngslYY~~~--~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i 153 (255)
T smart00284 77 TGVVVY-NGSLYFNKF--NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI 153 (255)
T ss_pred ccEEEE-CceEEEEec--CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE
Confidence 466666 588888644 678999999999999888777643221 4567777778876 332 23 3
Q ss_pred E-EEEECCCCcEEEEEecC-----CCceeEEeeCCCEEEEECC-----CCeEEEEeCCCCcEEEEEEeccCCeeeeecee
Q 019091 172 G-FIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG-----SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 172 v-~V~D~~tl~~i~ti~~~-----~peGwGLt~Dg~~LyvSdG-----s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE 240 (346)
+ ..+|+.||++..+..++ ..+..-+| ..||+.+. +.--+..|+.|.+... +.+.-. ++...+..
T Consensus 154 vvSkLnp~tL~ve~tW~T~~~k~sa~naFmvC---GvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~-n~y~~~s~ 228 (255)
T smart00284 154 VISKLNPATLTIENTWITTYNKRSASNAFMIC---GILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFE-NMYEYISM 228 (255)
T ss_pred EEEeeCcccceEEEEEEcCCCcccccccEEEe---eEEEEEccCCCCCcEEEEEEECCCCccce-eeeeec-ccccccee
Confidence 3 57999999999998864 22333344 68899762 2346788999877553 333211 22333344
Q ss_pred eEee--CCEEEE
Q 019091 241 LEFI--KGEVWA 250 (346)
Q Consensus 241 LE~~--~G~Lya 250 (346)
|.|- |.+||+
T Consensus 229 l~YNP~d~~LY~ 240 (255)
T smart00284 229 LDYNPNDRKLYA 240 (255)
T ss_pred ceeCCCCCeEEE
Confidence 5544 678886
No 148
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.80 E-value=0.4 Score=46.64 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=64.1
Q ss_pred eEEEecCCEEEEEcCCCC---------CCeEEEEECCCCcEEEEe-ccCCCeeEEEEE-EeCCEEEEEEee---------
Q 019091 109 GLLYAENDTLFESTGLYG---------RSSVRRVALETGKVEAIN-QMEGSYFGEGLT-LLGEKLFQVTWL--------- 168 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg---------~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit-~~g~~LY~ltw~--------- 168 (346)
+++.. +++||+-.|... -+.+.+||+.+++-.... .++...++.... ..+++||+.--.
T Consensus 58 ~~~~~-~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~ 136 (346)
T TIGR03547 58 VAAAI-DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYF 136 (346)
T ss_pred eEEEE-CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHH
Confidence 55554 589999988532 146889999998765543 344445555444 689999997432
Q ss_pred ------------------------------CCEEEEEECCCC--cEEEEEecCCCceeEEeeCCCEEEEECC
Q 019091 169 ------------------------------QKTGFIYDQNNL--NKLEEFTHQMKDGWGLATDGKVLFGSDG 208 (346)
Q Consensus 169 ------------------------------~~~v~V~D~~tl--~~i~ti~~~~peGwGLt~Dg~~LyvSdG 208 (346)
.+.+.+||+.+. +.+..++.....+-+++.-+++||+.-|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 208 (346)
T TIGR03547 137 ADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLING 208 (346)
T ss_pred hhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEee
Confidence 267999998765 4444444322356666666778888543
No 149
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.78 E-value=0.62 Score=45.88 Aligned_cols=204 Identities=12% Similarity=0.047 Sum_probs=137.1
Q ss_pred eEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC-EEEEEEeeCC
Q 019091 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE-KLFQVTWLQK 170 (346)
Q Consensus 93 ~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~-~LY~ltw~~~ 170 (346)
++.-+++. |-.+- .-+-+++|.+.++|+.+.| ++.+||.-|..-++.++++.. +-..++..+. .....--.+|
T Consensus 45 ~~~rr~LkGH~~Ki--~~~~ws~Dsr~ivSaSqDG--klIvWDs~TtnK~haipl~s~-WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKI--YAMDWSTDSRRIVSASQDG--KLIVWDSFTTNKVHAIPLPSS-WVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred eeeEEEecccccce--eeeEecCCcCeEEeeccCC--eEEEEEcccccceeEEecCce-eEEEEEECCCCCeEEecCcCc
Confidence 33334432 54444 4788889999999988655 999999998877788888854 4566677653 3445578899
Q ss_pred EEEEEECCCCcEEEEEec----CCCceeEEe---eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe
Q 019091 171 TGFIYDQNNLNKLEEFTH----QMKDGWGLA---TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~----~~peGwGLt---~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
...||+.++...-+..++ ..-.|+-=+ .|..+|..+-|+.+...+|.++++.+.... |-.|--+. | .|..
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~s-l-sl~p 196 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMS-L-SLSP 196 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec-CCcccEEE-E-ecCC
Confidence 999999987732222222 112333311 256778888899999999999998765443 11122111 1 1223
Q ss_pred eCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc--EEEEE
Q 019091 244 IKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK--LYEIN 318 (346)
Q Consensus 244 ~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~--l~ev~ 318 (346)
-++..|+.---+..-.+=|...|..+.+..-. +.-.|.+.|-|+|. -|+||-...+ ||.+|
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-------------esDINsv~ffP~G~-afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-------------ESDINSVRFFPSGD-AFATGSDDATCRLYDLR 259 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeeccc-------------ccccceEEEccCCC-eeeecCCCceeEEEeec
Confidence 37889988776777888899999998888431 12358899999875 5889888765 55554
No 150
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.75 E-value=0.35 Score=47.13 Aligned_cols=192 Identities=15% Similarity=0.121 Sum_probs=124.1
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEE-eeCCEEEEEECCCCc
Q 019091 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLN 181 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~lt-w~~~~v~V~D~~tl~ 181 (346)
+|-|| +-|..+|-|+.|++ .++...+|=..+|+.+..+.= ....|- ++++.+.=+++| --++.+-..|.++++
T Consensus 11 RplTq-iKyN~eGDLlFsca--KD~~~~vw~s~nGerlGty~GHtGavW~--~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 11 RPLTQ-IKYNREGDLLFSCA--KDSTPTVWYSLNGERLGTYDGHTGAVWC--CDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccce-EEecCCCcEEEEec--CCCCceEEEecCCceeeeecCCCceEEE--EEecCCcceeeeccccceeEEEEcCCCc
Confidence 45433 56666788888888 778999999889998888753 345555 455544333343 446788999999999
Q ss_pred EEEEEecCCC-ceeEEeeCCCE-EEEEC---C-CCeEEEEeCCC-------CcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019091 182 KLEEFTHQMK-DGWGLATDGKV-LFGSD---G-SSMLYQIDPQT-------LKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 182 ~i~ti~~~~p-eGwGLt~Dg~~-LyvSd---G-s~~l~vIDp~T-------~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
++++++++.+ -+..++.+|.. |+.+| | +..|.++|.+. .+...+|+..+. ++...+ +.+-+..|
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-kit~a~--Wg~l~~~i 162 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-KITSAL--WGPLGETI 162 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc-ceeeee--ecccCCEE
Confidence 9999998732 45567888876 56677 3 78999999873 333555655441 221111 22223344
Q ss_pred EEEecCCCeEEEEeCCCCeEE-EEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019091 249 WANVWQTDCIARISHEDGVVL-GWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 249 yaNv~~sn~I~vID~~TG~Vv-~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
.+ .-.+..|..-|..+|+.+ ..... + ....|-|-++++ ...||||-...+-..+.
T Consensus 163 i~-Ghe~G~is~~da~~g~~~v~s~~~---------h----~~~Ind~q~s~d-~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 163 IA-GHEDGSISIYDARTGKELVDSDEE---------H----SSKINDLQFSRD-RTYFITGSKDTTAKLVD 218 (327)
T ss_pred EE-ecCCCcEEEEEcccCceeeechhh---------h----ccccccccccCC-cceEEecccCccceeee
Confidence 44 345788999999999643 22211 1 124567888876 67899987765444433
No 151
>PLN02193 nitrile-specifier protein
Probab=96.74 E-value=0.38 Score=49.61 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=92.2
Q ss_pred CCEEEEEcCCCC---CCeEEEEECCCCcEEEEecc---CCCeeEEEEEEeCCEEEEEEee-----CCEEEEEECCCCcEE
Q 019091 115 NDTLFESTGLYG---RSSVRRVALETGKVEAINQM---EGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNNLNKL 183 (346)
Q Consensus 115 d~~LyeStGlyg---~s~V~~iDl~Tgkv~~~~~l---~~~~FgeGit~~g~~LY~ltw~-----~~~v~V~D~~tl~~i 183 (346)
++.||+-.|..+ .+.+.++|+.+.+-....++ +....+..++..+++||+.--. -+.+.+||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 578999887543 26799999999876554444 3333456778889999997432 356889998876543
Q ss_pred EEEec-----CCCceeEEeeCCCEEEEE---CC--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec
Q 019091 184 EEFTH-----QMKDGWGLATDGKVLFGS---DG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 184 ~ti~~-----~~peGwGLt~Dg~~LyvS---dG--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~ 253 (346)
. ++. ....+-+++.-++++|+- ++ .+.++++|+++.+-...-..+....|.... .....+++||+---
T Consensus 308 ~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~-~~~~~~~~iyv~GG 385 (470)
T PLN02193 308 H-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF-ASAAVGKHIVIFGG 385 (470)
T ss_pred e-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee-EEEEECCEEEEECC
Confidence 2 221 012344444334456653 33 478999999998875432222211121111 13345777775332
Q ss_pred --------------CCCeEEEEeCCCCeE
Q 019091 254 --------------QTDCIARISHEDGVV 268 (346)
Q Consensus 254 --------------~sn~I~vID~~TG~V 268 (346)
..|++.+.|++|.+=
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEE
Confidence 236799999999864
No 152
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.73 E-value=0.14 Score=50.72 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=113.5
Q ss_pred eeEEEEEE-ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019091 92 TIQVVNEF-PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 92 t~~Vv~t~-phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
.++.++++ +|-.+ ..+|.+.|.++|=.|-| |+..++.||+-+|+.-...++....=-.-....|++.++.- .+
T Consensus 116 ~W~~~~slK~H~~~--Vt~lsiHPS~KLALsVg--~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~ 189 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQ--VTDLSIHPSGKLALSVG--GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RN 189 (362)
T ss_pred CeEEeeeecccccc--cceeEecCCCceEEEEc--CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--cc
Confidence 46788888 56333 58999999999998977 88899999999999888888865431222223456676665 68
Q ss_pred EEEEEECCCCcEEEEEecCCCceeEEee-CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE-ee--CC
Q 019091 171 TGFIYDQNNLNKLEEFTHQMKDGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE-FI--KG 246 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~peGwGLt~-Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE-~~--~G 246 (346)
++-+|-.++-++..++..+ ..-.-+++ ++..|+|.=....|.+.|.........+....+ .+ -.+- |. ++
T Consensus 190 ~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RV---K~i~~~~~~~~ 263 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RV---KDIASYTNPEH 263 (362)
T ss_pred EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh--he---eeeEEEecCCc
Confidence 8889988888888888876 23334444 567788754457888999887554433333221 11 1111 22 35
Q ss_pred EEEEEecCCCeEEEEeCCCC-----eEEEEEEC
Q 019091 247 EVWANVWQTDCIARISHEDG-----VVLGWVLL 274 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG-----~Vv~~I~l 274 (346)
++.++.--+..|.|=|.+.. +.++.+|+
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~ 296 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDMETKKRPTLLAELNT 296 (362)
T ss_pred eEEEEeccCceEEEEEccccccCCcceeEEeec
Confidence 67777766666666666655 45566655
No 153
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.72 E-value=0.098 Score=51.75 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=112.3
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEE--eeCCC--EEEEECCCCeEEEEeCCCCcEEEEEEeccCCeee
Q 019091 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGL--ATDGK--VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGL--t~Dg~--~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv 235 (346)
++..+..-.+.++.+||..+.++++.+-....-=-+| .++-. +|...-.+..|.++|....+.++++.-..+
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~---- 128 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG---- 128 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc----
Confidence 4334446778899999999999999886531111123 33332 677655578999999999999988887542
Q ss_pred eeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019091 236 RNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 236 ~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
++|.|... -|+|-.++..+..+-.-|.-+|++-...++... ..+ |-|+|+|++|+|.+++==-+
T Consensus 129 -~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~------------at~--v~w~~~Gd~F~v~~~~~i~i 193 (362)
T KOG0294|consen 129 -QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK------------ATL--VSWSPQGDHFVVSGRNKIDI 193 (362)
T ss_pred -ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc------------cee--eEEcCCCCEEEEEeccEEEE
Confidence 35667776 478888998888888888889988777755221 122 88999999999999999999
Q ss_pred EEEEEeeccccccCCCchhHHHhhhhh
Q 019091 315 YEINLREMKRERKDGFNVDTIIEQLCL 341 (346)
Q Consensus 315 ~ev~l~~~~~~~~~~~~~~~~~~~~~~ 341 (346)
|+++.-.+-..++ +=++++|.
T Consensus 194 ~q~d~A~v~~~i~------~~~r~l~~ 214 (362)
T KOG0294|consen 194 YQLDNASVFREIE------NPKRILCA 214 (362)
T ss_pred EecccHhHhhhhh------ccccceee
Confidence 9998755444432 22566774
No 154
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.68 E-value=0.15 Score=52.95 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEE
Q 019091 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE 141 (346)
Q Consensus 86 ~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~ 141 (346)
+.+.-++++++.+- =..| -+|+|.|||+||++-- +..+|.+++..+++..
T Consensus 15 ~~p~~f~~~~va~G--L~~P--w~maflPDG~llVtER--~~G~I~~v~~~~~~~~ 64 (454)
T TIGR03606 15 AASENFDKKVLLSG--LNKP--WALLWGPDNQLWVTER--ATGKILRVNPETGEVK 64 (454)
T ss_pred cCCCCcEEEEEECC--CCCc--eEEEEcCCCeEEEEEe--cCCEEEEEeCCCCcee
Confidence 34455666666541 1345 4999999999998842 2359999998877543
No 155
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.67 E-value=0.48 Score=47.14 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=114.7
Q ss_pred eEEEecCC-E-EEEEcCCC-C------CCeEEEEECCCCcEEEEe--ccCCCee---EEEEEEeCCEEEEEEee--C-CE
Q 019091 109 GLLYAEND-T-LFESTGLY-G------RSSVRRVALETGKVEAIN--QMEGSYF---GEGLTLLGEKLFQVTWL--Q-KT 171 (346)
Q Consensus 109 GL~~~~d~-~-LyeStGly-g------~s~V~~iDl~Tgkv~~~~--~l~~~~F---geGit~~g~~LY~ltw~--~-~~ 171 (346)
++.+.+|+ . +|...+.. . ...|..+++.|+.-...+ .-+...| +.+.+.+++.|++.... + +.
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 48888886 3 44544431 1 567899999887543222 2233334 55555567777765433 3 67
Q ss_pred EEEEECCCC----cEEEEEecC-CCceeEEeeCCCEEEE-ECC---CCeEEEEeCCCCcE--EEEEEeccCCeeeeecee
Q 019091 172 GFIYDQNNL----NKLEEFTHQ-MKDGWGLATDGKVLFG-SDG---SSMLYQIDPQTLKV--IRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 172 v~V~D~~tl----~~i~ti~~~-~peGwGLt~Dg~~Lyv-SdG---s~~l~vIDp~T~kv--i~~I~V~~~G~pv~~lNE 240 (346)
++++|..+. .....+... ...-..+.+.|+.+|+ ||. ...|..+|.++... ...+.+... +-..+..
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~ 331 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED--EDVSLED 331 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEE
T ss_pred EEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC--CceeEEE
Confidence 999999875 333343322 1233345566887776 873 55999999888764 222333221 1113456
Q ss_pred eEeeCCEEEEEec--CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC---CcEE
Q 019091 241 LEFIKGEVWANVW--QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW---PKLY 315 (346)
Q Consensus 241 LE~~~G~LyaNv~--~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W---p~l~ 315 (346)
+...+++|+++.. ....|.++|...+.....+.++.. ....|+..+++++.++++=-.| +.+|
T Consensus 332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~------------g~v~~~~~~~~~~~~~~~~ss~~~P~~~y 399 (414)
T PF02897_consen 332 VSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA------------GSVSGVSGDFDSDELRFSYSSFTTPPTVY 399 (414)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS------------SEEEEEES-TT-SEEEEEEEETTEEEEEE
T ss_pred EEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc------------eEEeccCCCCCCCEEEEEEeCCCCCCEEE
Confidence 7777888776553 345799999997787788866332 2336777788899888876555 5566
Q ss_pred EEEE
Q 019091 316 EINL 319 (346)
Q Consensus 316 ev~l 319 (346)
...+
T Consensus 400 ~~d~ 403 (414)
T PF02897_consen 400 RYDL 403 (414)
T ss_dssp EEET
T ss_pred EEEC
Confidence 6654
No 156
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.66 E-value=0.081 Score=48.13 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=69.5
Q ss_pred ceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEE
Q 019091 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKL 183 (346)
Q Consensus 107 TqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i 183 (346)
...++++|+| ++.+..|.. ...|..||.+ ++.+..+.-... -..-.++.|+.|..+... ++.+.++|.++.+.+
T Consensus 62 I~~~~WsP~g~~favi~g~~-~~~v~lyd~~-~~~i~~~~~~~~-n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSM-PAKVTLYDVK-GKKIFSFGTQPR-NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred eEEEEECcCCCEEEEEEccC-CcccEEEcCc-ccEeEeecCCCc-eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence 4789999988 576777743 3499999997 555555432221 122234466766666533 568999999999999
Q ss_pred EEEecCCCceeEEeeCCCEEEEEC
Q 019091 184 EEFTHQMKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 184 ~ti~~~~peGwGLt~Dg~~LyvSd 207 (346)
.++.+.......-+|||+++.++.
T Consensus 139 ~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 139 STFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred eccccCcEEEEEEcCCCCEEEEEE
Confidence 999886556667899999998864
No 157
>PLN02193 nitrile-specifier protein
Probab=96.66 E-value=0.4 Score=49.41 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=94.7
Q ss_pred eEEEecCCEEEEEcCCCCC-----CeEEEEECCCCcEEEEec---cCC-CeeEEEEEEeCCEEEEEEee-----CCEEEE
Q 019091 109 GLLYAENDTLFESTGLYGR-----SSVRRVALETGKVEAINQ---MEG-SYFGEGLTLLGEKLFQVTWL-----QKTGFI 174 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~-----s~V~~iDl~Tgkv~~~~~---l~~-~~FgeGit~~g~~LY~ltw~-----~~~v~V 174 (346)
+.+.. ++.||+-.|.... +.+.+||+.+.+-..... +|. ...+..++..+++||+.--. -+.+++
T Consensus 170 ~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~ 248 (470)
T PLN02193 170 GIAQV-GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYS 248 (470)
T ss_pred EEEEE-CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEE
Confidence 44554 4789998885321 458899999987553222 222 12355677789999987432 368999
Q ss_pred EECCCCcEEE--EE---ecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEe-ccCCeeeeeceeeE
Q 019091 175 YDQNNLNKLE--EF---THQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIV-RYKGREVRNLNELE 242 (346)
Q Consensus 175 ~D~~tl~~i~--ti---~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V-~~~G~pv~~lNELE 242 (346)
||+.+.+-.. .. +.+ ..+-+++..++.||+-=| .+.++.+|+.+.+-.. +.. +....+.... .+.
T Consensus 249 yD~~t~~W~~l~~~~~~P~~-R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~-~~~ 325 (470)
T PLN02193 249 FDTTTNEWKLLTPVEEGPTP-RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGA-GLE 325 (470)
T ss_pred EECCCCEEEEcCcCCCCCCC-ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCc-EEE
Confidence 9998754433 22 222 244456666788998543 3568999999877642 221 1110111111 244
Q ss_pred eeCCEEEEEecC----CCeEEEEeCCCCeE
Q 019091 243 FIKGEVWANVWQ----TDCIARISHEDGVV 268 (346)
Q Consensus 243 ~~~G~LyaNv~~----sn~I~vID~~TG~V 268 (346)
..+|+||+---. .+++.+.|+++.+-
T Consensus 326 ~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 326 VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 567888864321 37899999999874
No 158
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.65 E-value=0.027 Score=56.34 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=126.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE--
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE-- 184 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~-- 184 (346)
-.|.|+ .++++|.. .+|+|++||..||+-++.+--. ++. -++-..++ ..+.--+++.+.|.|...-.-++
T Consensus 241 LCLqyd--~rviisGS--SDsTvrvWDv~tge~l~tlihHceaV--Lhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~r 313 (499)
T KOG0281|consen 241 LCLQYD--ERVIVSGS--SDSTVRVWDVNTGEPLNTLIHHCEAV--LHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLR 313 (499)
T ss_pred Eeeecc--ceEEEecC--CCceEEEEeccCCchhhHHhhhccee--EEEEEeCC-EEEEecCCceeEEEeccCchHHHHH
Confidence 456664 67888865 7899999999999876655221 111 22333333 33445778899999976543222
Q ss_pred EEecCCCcee-EEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeC
Q 019091 185 EFTHQMKDGW-GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISH 263 (346)
Q Consensus 185 ti~~~~peGw-GLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~ 263 (346)
.+=+|..+.. .+..|.+.+..+.|+.+|-++|..|.+-++++.-...|.+.- -.+|++.|.--.+|+|-.-|.
T Consensus 314 rVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl------QYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL------QYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred HHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceeh------hccCeEEEecCCCceEEEEec
Confidence 1112312222 256778855556789999999999999999887766555432 236788888878999999999
Q ss_pred CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccccccC
Q 019091 264 EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKD 328 (346)
Q Consensus 264 ~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~~~~ 328 (346)
+.|+++..+. -- ++..-.|.||.+ =.|.|.+.+++--=.|.....|+.+
T Consensus 388 ~~G~cLRvLe---GH----------EeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 388 ECGACLRVLE---GH----------EELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred cccHHHHHHh---ch----------HHhhhheeecCc---eeeeccccceEEEEecccccCCccc
Confidence 9998754441 01 123355888743 3689999998877777654444433
No 159
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.42 Score=47.27 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=102.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCC---cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEEC---CCCc
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETG---KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ---NNLN 181 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg---kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~---~tl~ 181 (346)
.-+.++. +..|++. +++.++++|..+- ..+..++++ -++-|+.+.|+..|+++|.+ -.+++|. .+=.
T Consensus 90 ~Dv~vse-~yvyvad---~ssGL~IvDIS~P~sP~~~~~lnt~--gyaygv~vsGn~aYVadldd-gfLivdvsdpssP~ 162 (370)
T COG5276 90 ADVRVSE-EYVYVAD---WSSGLRIVDISTPDSPTLIGFLNTD--GYAYGVYVSGNYAYVADLDD-GFLIVDVSDPSSPQ 162 (370)
T ss_pred heeEecc-cEEEEEc---CCCceEEEeccCCCCcceeccccCC--ceEEEEEecCCEEEEeeccC-cEEEEECCCCCCce
Confidence 3445542 5678875 5788999997654 455555664 45778999999999999954 4455664 4556
Q ss_pred EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCC---CCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019091 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQ---TLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~---T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
+.++......+-|-++-.|++.|+++-++-|.++|.. .-+.+.+...+. -... .-.-+.+.|+.+. +.-+
T Consensus 163 lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~--g~~s----v~vsdnr~y~vvy-~egv 235 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP--GTYS----VSVSDNRAYLVVY-DEGV 235 (370)
T ss_pred eeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC--ceEE----EEecCCeeEEEEc-ccce
Confidence 7778876533446777779999999988888888854 444555544432 1111 2234678898886 5556
Q ss_pred EEEeCCCCe---EEEEEECCc
Q 019091 259 ARISHEDGV---VLGWVLLPN 276 (346)
Q Consensus 259 ~vID~~TG~---Vv~~I~l~~ 276 (346)
..+|..+-+ +.+..+.++
T Consensus 236 livd~s~~ssp~~~gsyet~~ 256 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYETSN 256 (370)
T ss_pred EEEecCCCCCceEeeccccCC
Confidence 677766554 666665543
No 160
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.54 E-value=0.023 Score=56.94 Aligned_cols=171 Identities=14% Similarity=0.106 Sum_probs=116.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeC-CCEE
Q 019091 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATD-GKVL 203 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~D-g~~L 203 (346)
.+..|..||+.+.+......-..+ |-.||.++. ..+++.+-+.=+.+.+|.. .+.+|.-. .+=.|+++. ..-+
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~---p~~tilg~-s~~~gIdh~~~~~~ 161 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAHEG-LVRGICVTQTSFFTVGDDKTVKQWKIDGP---PLHTILGK-SVYLGIDHHRKNSV 161 (433)
T ss_pred cCceEEEEehhhhhhhheeecccC-ceeeEEecccceEEecCCcceeeeeccCC---cceeeecc-cccccccccccccc
Confidence 456999999999887776655432 566777765 4456666666667777763 66666533 233355543 4456
Q ss_pred EEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhh
Q 019091 204 FGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVA 283 (346)
Q Consensus 204 yvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~ 283 (346)
|+|-| ..|.++|.+--..+.+..-|.+....-..| ++.-.|.+.+-.+..|++.|..++..+..+-+ .+
T Consensus 162 FaTcG-e~i~IWD~~R~~Pv~smswG~Dti~svkfN---pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~m------ 230 (433)
T KOG0268|consen 162 FATCG-EQIDIWDEQRDNPVSSMSWGADSISSVKFN---PVETSILASCASDRSIVLYDLRQASPLKKVIL-TM------ 230 (433)
T ss_pred ccccC-ceeeecccccCCccceeecCCCceeEEecC---CCcchheeeeccCCceEEEecccCCccceeee-ec------
Confidence 77655 479999998777777776665422221111 12235888888899999999999999888855 33
Q ss_pred ccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 284 AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 284 ~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
-.|+|+|+| ....||+|--.-.||--+..
T Consensus 231 -------RTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 231 -------RTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred -------cccceecCc-cccceeeccccccceehhhh
Confidence 359999999 67788888888888865554
No 161
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.53 E-value=0.1 Score=53.86 Aligned_cols=179 Identities=9% Similarity=0.084 Sum_probs=116.7
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee-EEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF-GEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F-geGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
-+..|-.||+|+.+.+. +.-|.+||..+..+++.+.-...|- -.=+++.++++++.--.+..+-..|.++..+..++
T Consensus 72 ~s~~fR~DG~LlaaGD~--sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDE--SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred eEEEeecCCeEEEccCC--cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 37888889999988774 4599999977754444433222111 11234567888888888888888898888875455
Q ss_pred ecCCCcee----EEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019091 187 THQMKDGW----GLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 187 ~~~~peGw----GLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
..- +-+ .++|-.+++++|=| +.+|..+|+.+.. ..+---++|.|+... |-..+|.+.|... .|.|-|+
T Consensus 150 ~~h--tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--~~v~elnhg~pVe~v--l~lpsgs~iasAg-Gn~vkVW 222 (487)
T KOG0310|consen 150 SGH--TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--SRVVELNHGCPVESV--LALPSGSLIASAG-GNSVKVW 222 (487)
T ss_pred cCC--cceeEeeccccCCCeEEEecCCCceEEEEEeccCC--ceeEEecCCCceeeE--EEcCCCCEEEEcC-CCeEEEE
Confidence 421 111 35677889999987 8999999998874 222223467787633 5455778888774 8899999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
|.-+|...-.--. .. .-.--.+++..++.+|+-.
T Consensus 223 Dl~~G~qll~~~~-----~H-------~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 223 DLTTGGQLLTSMF-----NH-------NKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred EecCCceehhhhh-----cc-------cceEEEEEeecCCceEeec
Confidence 9998765322211 01 1133456777776665533
No 162
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.50 E-value=0.03 Score=54.93 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=71.4
Q ss_pred eEEeeCCCEEEE-EC-CC----CeEEEEeCC-------CCcEEEEEEecc-CCeeeee---cee-eEe-eCCEEEEEecC
Q 019091 194 WGLATDGKVLFG-SD-GS----SMLYQIDPQ-------TLKVIRKDIVRY-KGREVRN---LNE-LEF-IKGEVWANVWQ 254 (346)
Q Consensus 194 wGLt~Dg~~Lyv-Sd-Gs----~~l~vIDp~-------T~kvi~~I~V~~-~G~pv~~---lNE-LE~-~~G~LyaNv~~ 254 (346)
+...++++++|+ || |. ..++.++.. ..++...+...+ +|.++.. -.| |.+ .+|.+|+....
T Consensus 25 l~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is~E~ 104 (326)
T PF13449_consen 25 LDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWISSEG 104 (326)
T ss_pred EEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEEeCC
Confidence 334434555554 88 44 234444322 223344455543 4666521 112 445 57899999999
Q ss_pred C------CeEEEEeCCCCeEEEEEECCchh-hhh-hhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 255 T------DCIARISHEDGVVLGWVLLPNLR-ERL-VAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 255 s------n~I~vID~~TG~Vv~~I~l~~l~-~~~-~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
. ..|.++|+. |+++..+.++.-. +.. ...+.+.+.-+.|+|++|++++||+.-+.
T Consensus 105 ~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 105 GRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred ccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 9 999999988 9999999664421 100 00223567799999999999988876443
No 163
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.50 E-value=0.29 Score=50.22 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=124.0
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE-EEEEEeC-CEEEEEEeeCCEEEEE
Q 019091 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG-EGLTLLG-EKLFQVTWLQKTGFIY 175 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg-eGit~~g-~~LY~ltw~~~~v~V~ 175 (346)
..||+..- .|+...++|.-++++. .+...-+.|..+|+.+-.+.-.....+ ...+.+. +.||.+--.++.+-++
T Consensus 299 ~~~h~~~V--~~ls~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 299 SRPHEEPV--TGLSLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred cccccccc--eeeeeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 45675444 7999999998888877 566999999999998777755322101 1123333 5677776778999999
Q ss_pred ECCCCcEEEEEecC-CC-ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEe
Q 019091 176 DQNNLNKLEEFTHQ-MK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANV 252 (346)
Q Consensus 176 D~~tl~~i~ti~~~-~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv 252 (346)
|.+....++.|+.. .| --..++.+|.||.++-.+..|..+|.+..+-.+++...+. ++ .|.++++. |...+.-
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~-~~---v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK-KE---VNSLSFDQSGTYLGIA 450 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc-cc---ceeEEEcCCCCeEEee
Confidence 99999999999863 11 3345777899998854445599999999998899988652 23 45677774 4322222
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
..+=.|+..+-.+-.=...-.+.++. ..-+|+.|....+.++.||
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~s-----------g~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHS-----------GLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcc-----------cccceeeecccceEEeecc
Confidence 22334666664443322222111111 1238899987666666554
No 164
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.47 E-value=0.062 Score=52.15 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=76.3
Q ss_pred CeEEEEeCCCCcEEEEEEeccC-CeeeeeceeeEeeC-------CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhh
Q 019091 210 SMLYQIDPQTLKVIRKDIVRYK-GREVRNLNELEFIK-------GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERL 281 (346)
Q Consensus 210 ~~l~vIDp~T~kvi~~I~V~~~-G~pv~~lNELE~~~-------G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~ 281 (346)
-+|.++|.+|.++++++..... -.+-.++|.|-.+. +++|++.-...-|+|+|.++|+--...+= .....
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~- 111 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPD- 111 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS-
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-Cccee-
Confidence 5899999999999999999753 23456888877664 68999998888999999999997544422 11111
Q ss_pred hh------cc--CCCCceeeEEEEeC---CCCEEEEecCCCCcEEEEEEeeccc
Q 019091 282 VA------AG--YNGIDVLNGIAWDS---NRNRIFVTGKLWPKLYEINLREMKR 324 (346)
Q Consensus 282 ~~------~~--~~~~~vlNGIA~d~---~~~~LfVTGK~Wp~l~ev~l~~~~~ 324 (346)
+. .+ ....+-..|||.+| +++.||-.=-...++|.|...-++.
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~ 165 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRD 165 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCS
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhC
Confidence 00 00 01123378999987 7789998877788999998754443
No 165
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.44 E-value=0.25 Score=47.42 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=121.6
Q ss_pred eEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019091 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
=+|++++- |+.+- .-+.|..+..+..|.+ =+++++.||-.+..+...+-++...=|.---...++..++---+++
T Consensus 91 Gkv~Rr~rgH~aqV--NtV~fNeesSVv~Sgs--fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQV--NTVRFNEESSVVASGS--FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred Ceeeeeccccccee--eEEEecCcceEEEecc--ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc
Confidence 35666664 43333 5667754446777866 5689999999998877766665432222111134556666667899
Q ss_pred EEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-----C-
Q 019091 172 GFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-----K- 245 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-----~- 245 (346)
+-.||...++..-.+--..-.-.-+++||+.+.++-=+++|..+|-+|+++++.-+=.. | +||. +
T Consensus 167 vRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk--------n-~eykldc~l~q 237 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK--------N-MEYKLDCCLNQ 237 (307)
T ss_pred EEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc--------c-ceeeeeeeecc
Confidence 99999887765443211101344588999999998777899999999999865433211 1 2222 1
Q ss_pred -CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019091 246 -GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 246 -G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
....+..-.+..|..-|...++++..+.+.+.. ...-+++.|.-..|++++..-..
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v------------~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV------------IVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCce------------eEEeeecccCccceeEecCCcee
Confidence 123333334555666677777776666442211 13457888988899888665433
No 166
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.39 E-value=0.094 Score=56.50 Aligned_cols=193 Identities=15% Similarity=0.115 Sum_probs=126.7
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCE---EEEEEeeCCEEEEEECCCCcE-
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEK---LFQVTWLQKTGFIYDQNNLNK- 182 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~---LY~ltw~~~~v~V~D~~tl~~- 182 (346)
-.++|+|.+.|.-+.| -+..|.+||...+..+.... .|+-. -.+...++. +...-..++.+.++|..+...
T Consensus 109 i~ma~~~~g~LlAtgg--aD~~v~VWdi~~~~~th~fkG~gGvV--ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc 184 (775)
T KOG0319|consen 109 ITMAFDPTGTLLATGG--ADGRVKVWDIKNGYCTHSFKGHGGVV--SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC 184 (775)
T ss_pred EEEEEcCCCceEEecc--ccceEEEEEeeCCEEEEEecCCCceE--EEEEeCCccchhheeecCCCceEEEEEcccCchH
Confidence 6899999887776666 35699999999998877775 34321 112223333 335667799999999986554
Q ss_pred EEEEec--CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC--CEEEEEecCCCeE
Q 019091 183 LEEFTH--QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK--GEVWANVWQTDCI 258 (346)
Q Consensus 183 i~ti~~--~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~--G~LyaNv~~sn~I 258 (346)
+.+..- ..--|.++.+|+..++..-.+..++++|..+.+..+++++.+.=+.+..+-| -.+ |..+.+...+..+
T Consensus 185 l~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~--~~~~~~~~~~TaG~~g~~ 262 (775)
T KOG0319|consen 185 LHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE--ELGGKGEYIITAGGSGVV 262 (775)
T ss_pred HHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEech--hcCCcceEEEEecCCceE
Confidence 333321 1346778899988887777789999999999998889988763122222211 012 3466677789999
Q ss_pred EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019091 259 ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
-.+|+++++++.+-.-++.. .--.+.+.....+.|.||..+-=.+|+.
T Consensus 263 ~~~d~es~~~~~~~~~~~~~-----------e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 263 QYWDSESGKCVYKQRQSDSE-----------EIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred EEEecccchhhhhhccCCch-----------hhhcceeccccCceEEEEccceEEEEEc
Confidence 99999999987666443311 1113344444556667886665555543
No 167
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=0.3 Score=53.88 Aligned_cols=206 Identities=12% Similarity=0.159 Sum_probs=126.7
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEE
Q 019091 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D 176 (346)
+|-|-.. + +++.++++|..+.++| .+..|++|+..+-. .-..+.. ..-+..+++...++ |++.-.++.|.+|-
T Consensus 9 Ryaht~G-~-t~i~~d~~gefi~tcg--sdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~-f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 9 RYAHTGG-L-TLICYDPDGEFICTCG--SDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNH-FLTGSEQNTVLRYK 82 (933)
T ss_pred hhhccCc-e-EEEEEcCCCCEEEEec--CCCceEEeecCCcccCCchhhc-cCceeEEEeecccc-eEEeeccceEEEee
Confidence 3445323 4 7999999997666667 34589998766552 2122221 23345667776664 44455568888877
Q ss_pred CCCC---cEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEe
Q 019091 177 QNNL---NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (346)
Q Consensus 177 ~~tl---~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv 252 (346)
-..+ .++.+|..++ .-..++.+|+++...-.+-.|-+++..+...++...=.+ .|+. .|.|. +|.+.|..
T Consensus 83 fps~~~~~iL~Rftlp~-r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~--apVl---~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPI-RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD--APVL---QLSYDPKGNFLAVS 156 (933)
T ss_pred CCCCCccceeeeeeccc-eEEEEecCCcEEEeecCceeEEEEeccccchheeecccC--Ccee---eeeEcCCCCEEEEE
Confidence 5544 3788888874 556777788877664334577788877655544333222 2443 36666 56777777
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec----------CCCCcEEEEEEe
Q 019091 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG----------KLWPKLYEINLR 320 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG----------K~Wp~l~ev~l~ 320 (346)
--+..|.++|..+|.+..+++- +.+... .....--+=.||.|++.+|.+-+ +.|-..|..+..
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~--v~k~n~---~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~ 229 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTG--VDKDNE---FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK 229 (933)
T ss_pred ecCceEEEEEcccchhhhhccc--CCcccc---ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence 7788999999999999888742 222110 01112345579999977666543 456666655543
No 168
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.34 E-value=0.39 Score=47.80 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=70.1
Q ss_pred eEEEecCCEEEEEcCCCC---------CCeEEEEECCCCcEEEEec-cCCCeeEEEEEE-eCCEEEEEEee---------
Q 019091 109 GLLYAENDTLFESTGLYG---------RSSVRRVALETGKVEAINQ-MEGSYFGEGLTL-LGEKLFQVTWL--------- 168 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg---------~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~-~g~~LY~ltw~--------- 168 (346)
+++.. ++.||+-.|..+ .+.+.+||+.+.+-..... .+...++..... .+++||+.--.
T Consensus 79 ~~v~~-~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~ 157 (376)
T PRK14131 79 VAAFI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYF 157 (376)
T ss_pred eEEEE-CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHH
Confidence 34443 589999887532 1468899999987554332 233344544444 78999998332
Q ss_pred ------------------------------CCEEEEEECCCC--cEEEEEecCCCceeEEeeCCCEEEEECC-------C
Q 019091 169 ------------------------------QKTGFIYDQNNL--NKLEEFTHQMKDGWGLATDGKVLFGSDG-------S 209 (346)
Q Consensus 169 ------------------------------~~~v~V~D~~tl--~~i~ti~~~~peGwGLt~Dg~~LyvSdG-------s 209 (346)
.+.+.+||+.+. +.+..++.....+-++...+++||+--| +
T Consensus 158 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~ 237 (376)
T PRK14131 158 EDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRT 237 (376)
T ss_pred hhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCC
Confidence 367999998764 4444555422345566666778887543 2
Q ss_pred CeEE--EEeCCCCcEE
Q 019091 210 SMLY--QIDPQTLKVI 223 (346)
Q Consensus 210 ~~l~--vIDp~T~kvi 223 (346)
..++ .+|+++.+-.
T Consensus 238 ~~~~~~~~~~~~~~W~ 253 (376)
T PRK14131 238 DAVKQGKFTGNNLKWQ 253 (376)
T ss_pred hhheEEEecCCCccee
Confidence 3344 4577776654
No 169
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.32 E-value=0.19 Score=50.59 Aligned_cols=209 Identities=9% Similarity=0.012 Sum_probs=134.8
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEE-EeeCCEEEEEECCCC
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQV-TWLQKTGFIYDQNNL 180 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~l-tw~~~~v~V~D~~tl 180 (346)
...|...++++|.+..|.+.+ ++..+-+||++||++...++ .-.. -+|+++...+=|+- .-.++.|--+|....
T Consensus 150 HlgWVr~vavdP~n~wf~tgs--~DrtikIwDlatg~LkltltGhi~~--vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGS--ADRTIKIWDLATGQLKLTLTGHIET--VRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred ccceEEEEeeCCCceeEEecC--CCceeEEEEcccCeEEEeecchhhe--eeeeeecccCceEEEecCCCeeEEEechhh
Confidence 367889999999888888766 67799999999999888775 3222 47888888766654 456677888999999
Q ss_pred cEEEEEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019091 181 NKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 181 ~~i~ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
+++..+---+ -....+.|--+.|+..-.+..+.++|-.|...+..+.=.. .|+..+ .....|+.||-.. .+.+|
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~--~~V~~V-~~~~~dpqvit~S-~D~tv 301 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT--NPVASV-MCQPTDPQVITGS-HDSTV 301 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC--CcceeE-EeecCCCceEEec-CCceE
Confidence 9988875322 2333344545566655568899999998876654443222 243321 1123377777544 57788
Q ss_pred EEEeCCCCeEEEEEECCch-------hh----------hhhh-ccCCC--------CceeeEEEEeCCCCEEEEecCCCC
Q 019091 259 ARISHEDGVVLGWVLLPNL-------RE----------RLVA-AGYNG--------IDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l-------~~----------~~~~-~~~~~--------~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
-.=|...|+-..++--..- -| ...+ ...|. +-.-++-++.-..+-.+|+|..-.
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng 381 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG 381 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence 8888888886655521100 00 0000 00011 112255677777788899998888
Q ss_pred cEEEEEE
Q 019091 313 KLYEINL 319 (346)
Q Consensus 313 ~l~ev~l 319 (346)
.|.-=+-
T Consensus 382 ~~~fwdw 388 (460)
T KOG0285|consen 382 SIMFWDW 388 (460)
T ss_pred EEEEEec
Confidence 8876554
No 170
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.088 Score=53.14 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=104.6
Q ss_pred EEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCe-------eEEEEEEe-C--CEEEEEEeeCCEEEEEECC-CCcEEEE
Q 019091 118 LFESTGLYGRSSVRRVALETGKVEAINQ-MEGSY-------FGEGLTLL-G--EKLFQVTWLQKTGFIYDQN-NLNKLEE 185 (346)
Q Consensus 118 LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~-------FgeGit~~-g--~~LY~ltw~~~~v~V~D~~-tl~~i~t 185 (346)
++-..|....+.+-+||+.+.+-+-+-+ +++.. +-.++... + ..-|+.--+-+.+-+||++ .++.+.+
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 3333454434789999999886544442 44332 22333332 2 4566666677999999987 5678999
Q ss_pred EecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEecCCCeEEEEe
Q 019091 186 FTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQTDCIARIS 262 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~~sn~I~vID 262 (346)
|++. .---.|++|+|+.+|+.|-..+|..+|..++++...--=+..|.+.+ +-...+ .+.|.+..+..|-+-|
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs----ih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS----IHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce----EEEcCCCceEEeeccceeEEEee
Confidence 9974 12556799999999999999999999999988765422233344433 555554 7888998888999999
Q ss_pred CCCCeEEEEE
Q 019091 263 HEDGVVLGWV 272 (346)
Q Consensus 263 ~~TG~Vv~~I 272 (346)
.+|.+.+..+
T Consensus 319 ~ktrkll~kv 328 (412)
T KOG3881|consen 319 IKTRKLLHKV 328 (412)
T ss_pred cccchhhhhh
Confidence 9997766554
No 171
>PHA02790 Kelch-like protein; Provisional
Probab=96.23 E-value=0.1 Score=53.89 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=72.6
Q ss_pred eEEEecCCEEEEEcCCCCC-CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE--EEE
Q 019091 109 GLLYAENDTLFESTGLYGR-SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK--LEE 185 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~-s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~--i~t 185 (346)
+.+.. +|+||+..|..+. +.+..||+++++-...-+++...++.+++..+++||+.- +.+.+||+++-+- +..
T Consensus 357 ~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~ 432 (480)
T PHA02790 357 AVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDD 432 (480)
T ss_pred EEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCC
Confidence 34443 6899999886543 568899999998766666665545667788899999975 3467888875544 344
Q ss_pred EecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCc
Q 019091 186 FTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLK 221 (346)
Q Consensus 186 i~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~k 221 (346)
.+.+ ..+-+++.-++++|+.=| .+.+...||++.+
T Consensus 433 m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 433 PIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4443 345566666778888654 2456666766654
No 172
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.20 E-value=0.46 Score=50.30 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=102.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEE
Q 019091 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLF 204 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Ly 204 (346)
+.+.|+.||..+++.+..-..+..-=--++... ++.+++.--.+.++.|-|..+++-+..+.....-+.-++-++..+.
T Consensus 226 ~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~ 305 (537)
T KOG0274|consen 226 DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLV 305 (537)
T ss_pred CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEe
Confidence 568999999999998887444321112335554 3555556566899999999999999999853234444555555555
Q ss_pred EECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019091 205 GSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 205 vSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
..-.+++|.++|.++.+.++.+.. ++.+ ++++.+.++++++... +..|.|.|+.+++++.++.
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~~--h~~~---V~~v~~~~~~lvsgs~-d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLRG--HTGP---VNCVQLDEPLLVSGSY-DGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred eccCCceEEEEeccCcceEEEecc--cccc---EEEEEecCCEEEEEec-CceEEEEEhhhceeeeeec
Confidence 434589999999999999888874 2224 4577777777877765 6699999999999988873
No 173
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.19 E-value=0.28 Score=48.24 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=34.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcE---EEEe-cc--CCCeeEEEEEEeC-----CEEEEEEe
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKV---EAIN-QM--EGSYFGEGLTLLG-----EKLFQVTW 167 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv---~~~~-~l--~~~~FgeGit~~g-----~~LY~ltw 167 (346)
.+|++.|||+||++.= . ..|.+++ ..|.. +..+ .+ ....=-.|++++. +.||+..-
T Consensus 5 ~~~a~~pdG~l~v~e~-~--G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAER-S--GRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEEEETTSCEEEEET-T--TEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred eEEEEeCCCcEEEEeC-C--ceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 4899999999999843 3 4999999 55554 2222 11 1111135677776 78998744
No 174
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.16 E-value=0.16 Score=51.78 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=101.0
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeec
Q 019091 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~l 238 (346)
...++..-.++++-.+|..+-..+.+++.+ .-.-..+++||..|..+-.++.+.+||..|+++......... +--...
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~-k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF-KCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc-cccccc
Confidence 556777888999999999999999999986 224455788999999997799999999999999887776431 111112
Q ss_pred eeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 239 NELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 239 NELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+..-+- +|...|+=-....|.+=+..||++...+..+... .-.+.++|+|-|.-|.-++|+
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~-----------~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN-----------AAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC-----------cceEEEEEcCCCchhhcccCC
Confidence 333333 3433344445677999999999999888663321 145789999999888777663
No 175
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=96.14 E-value=0.42 Score=48.37 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=119.9
Q ss_pred EEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCC--eeEEEEEEeC-CEEE--------
Q 019091 97 NEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN-QMEGS--YFGEGLTLLG-EKLF-------- 163 (346)
Q Consensus 97 ~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~--~FgeGit~~g-~~LY-------- 163 (346)
++-|...+| .||+|...+ .||++..=+ .|.+++++.|+..... ..++. .|.-+++++. +.+|
T Consensus 109 ~~e~~CGRP--LGl~f~~~ggdL~VaDAYl---GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~ 183 (376)
T KOG1520|consen 109 ETEPLCGRP--LGIRFDKKGGDLYVADAYL---GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKY 183 (376)
T ss_pred ecccccCCc--ceEEeccCCCeEEEEecce---eeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEecccccc
Confidence 333445778 599999666 899998733 5999999988732222 12222 2444455532 3333
Q ss_pred -------EE--EeeCCEEEEEECCCCcEEEEEe-cCCCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCC
Q 019091 164 -------QV--TWLQKTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 164 -------~l--tw~~~~v~V~D~~tl~~i~ti~-~~~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
.+ .-.+++++.||+.|....-=.+ ..-|.|.+|++|+..+.+++. ..+|.-+=.+--++ .+.+|=.+|
T Consensus 184 ~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~-gt~EvFa~~ 262 (376)
T KOG1520|consen 184 DRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKA-GTSEVFAEG 262 (376)
T ss_pred chhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCcc-CchhhHhhc
Confidence 22 2246889999987653311111 113799999999999999984 44554433221111 111111111
Q ss_pred eeeeeceeeEee-CCEEEEEe---------------cC----------------------CCeEEEEeCCCCeEEEEEEC
Q 019091 233 REVRNLNELEFI-KGEVWANV---------------WQ----------------------TDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 233 ~pv~~lNELE~~-~G~LyaNv---------------~~----------------------sn~I~vID~~TG~Vv~~I~l 274 (346)
-|=..-| +-.. +|..||.. |- -+.+++..-++|+|++.+.-
T Consensus 263 LPG~PDN-IR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD 341 (376)
T KOG1520|consen 263 LPGYPDN-IRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHD 341 (376)
T ss_pred CCCCCcc-eeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEec
Confidence 1100011 1122 45566655 21 11566677799999999954
Q ss_pred CchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 275 PNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 275 ~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+.+ .+-..+...+..++||+.-=.||.+..++|
T Consensus 342 ~~g~-----------~~~~~sev~E~dg~LyiGS~~~p~i~~lkl 375 (376)
T KOG1520|consen 342 KEGK-----------VITLVSEVGEHDGHLYIGSLFNPYIARLKL 375 (376)
T ss_pred CCCC-----------ceEEEEEEeecCCeEEEcccCcceeEEEec
Confidence 2221 244667788778899999999999999886
No 176
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.13 E-value=0.094 Score=53.42 Aligned_cols=181 Identities=11% Similarity=0.029 Sum_probs=126.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
--++|.|+|+.+.++. =+++=+.||+.|++.+..+. -....|......+|. |...--.+...-|.|..|++.+-.+
T Consensus 265 s~VafHPsG~~L~Tas--fD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTAS--FDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred eeeeecCCCceeeecc--cccchhhcccccchhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEe
Confidence 4678999999887766 45799999999997654442 345666654444443 5555567888999999999998887
Q ss_pred ecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCC
Q 019091 187 THQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 187 ~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~ 264 (346)
.--. -.+..++|+|..|-..-++|++-|+|.+--+.+-+|+...+ -|... -.+...|+-.|+.-+++++-+=.+.
T Consensus 342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~V-k~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQV-KYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhhe-EecccCCeEEEEcccCcceeeecCC
Confidence 6422 25666788898888877899999999988787777776432 22111 0223357888999899999999999
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
++..+..+ .+ + .+.| -+++++++++-+.-+
T Consensus 419 ~~~~~ksL-----aG----H---e~kV-~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 419 TWSPLKSL-----AG----H---EGKV-ISLDISPDSQAIATS 448 (459)
T ss_pred Ccccchhh-----cC----C---ccce-EEEEeccCCceEEEe
Confidence 88866555 11 1 1223 358888888755544
No 177
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.13 E-value=0.26 Score=50.19 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=71.2
Q ss_pred eEEEecCCE-EEEEcCCCCCCeEEEEECCC-CcEEEEeccC-CCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEE
Q 019091 109 GLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEAINQME-GSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKL 183 (346)
Q Consensus 109 GL~~~~d~~-LyeStGlyg~s~V~~iDl~T-gkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i 183 (346)
...++|||+ |+.++...|...|.+++++. +.....+... .....-..+++|++|+.+.-. ...++++|.++.+..
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 568899984 54444334667888888763 3323333322 222223356778887765433 357999999888653
Q ss_pred EEEecC--CCceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEE
Q 019091 184 EEFTHQ--MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVI 223 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi 223 (346)
.+..+ ..+....++||+.|+. ++ +...|+.+|..+.+..
T Consensus 365 -~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 365 -QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred -EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 33221 2244567899998865 43 4678999999887653
No 178
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.13 E-value=1.3 Score=44.72 Aligned_cols=163 Identities=11% Similarity=0.121 Sum_probs=105.3
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019091 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
-|-...| -+..+|+.+|..+.| |++.-..||..+|.......= ....-..+++. .+.+.+.--.+++++|++..
T Consensus 62 ~H~~svF--avsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 62 KHTDSVF--AVSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hcCCceE--EEEeCCCCceEEecC--CCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcc
Confidence 4666676 556667778888888 888999999999996666542 22222222222 23344444679999999999
Q ss_pred CCcEEEEEecCCCce--eEE-eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCCEEEEEecC
Q 019091 179 NLNKLEEFTHQMKDG--WGL-ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANVWQ 254 (346)
Q Consensus 179 tl~~i~ti~~~~peG--wGL-t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~LyaNv~~ 254 (346)
|.....++..+. ++ |=- .|-+..|..-..+..|+++...+... .+|-. ++.|.. ..|+-. +|+..+..+.
T Consensus 137 tg~~~~~~~~e~-~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~---~kv~~Gh~~~ct-~G~f~p-dGKr~~tgy~ 210 (399)
T KOG0296|consen 137 TGGEQWKLDQEV-EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL---CKVMSGHNSPCT-CGEFIP-DGKRILTGYD 210 (399)
T ss_pred cCceEEEeeccc-CceEEEEecccccEEEeecCCCcEEEEECCCcce---eeEecCCCCCcc-cccccC-CCceEEEEec
Confidence 999999997542 22 222 34456666644566787777665433 33321 223332 123322 4665566666
Q ss_pred CCeEEEEeCCCCeEEEEEE
Q 019091 255 TDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~ 273 (346)
+.+|.+-||+||.++.++.
T Consensus 211 dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred CceEEEEecCCCceeEEec
Confidence 8899999999999999996
No 179
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.041 Score=55.49 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=87.2
Q ss_pred CcceeEEEecC--CEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCCC-eeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 105 AFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGK-VEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 105 ~FTqGL~~~~d--~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~~-~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
-|.+++.|.++ ..-|++...|+ +|+.||+..++ -+..+++... .-..|+++.++.||+.|.. +.+..||..++
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~h--qvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~ 279 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYH--QVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGG 279 (412)
T ss_pred eeeccceecCCCCCceEEEEecce--eEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCc
Confidence 35577778754 34444444345 99999999864 5566665433 3457788889999999865 78899999999
Q ss_pred cEEEE-EecCCCceeEEe-eCCCEEEEECC-CCeEEEEeCCCCcEEEEEEecc
Q 019091 181 NKLEE-FTHQMKDGWGLA-TDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 181 ~~i~t-i~~~~peGwGLt-~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~ 230 (346)
++++. +.--.+.--.+. +++..+..|-| +..|.+.|.+|.+.+.++-|+.
T Consensus 280 kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 280 KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 99988 442111222343 45556777778 8899999999999888888865
No 180
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.087 Score=52.45 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=93.3
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEE-EEEE--eCCEEEEEEeeCCEEEEEECCC
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE-GLTL--LGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fge-Git~--~g~~LY~ltw~~~~v~V~D~~t 179 (346)
...|..-..|++||.-.+|+. .+.+|.+|+.+|++-+...+.++..... .+-+ .+-.-+++-.++|.+++.+. .
T Consensus 347 HsSyvn~a~ft~dG~~iisaS--sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-q 423 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISAS--SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-Q 423 (508)
T ss_pred ccccccceEEcCCCCeEEEec--CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-c
Confidence 467778888999997666666 4559999999999877776543322111 1112 23345556667899999985 5
Q ss_pred CcEEEEEecCCCceeE-----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019091 180 LNKLEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 180 l~~i~ti~~~~peGwG-----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
++++++|.-+..||=. |+|-|+|+|..-.+..+|-+...++++.++..|.+
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 8899999887445533 78999999998778999999999999999999976
No 181
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.10 E-value=0.012 Score=60.59 Aligned_cols=135 Identities=21% Similarity=0.167 Sum_probs=93.5
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCE
Q 019091 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~ 171 (346)
=+||++|.+...+. .-+.|-++|+=|+|+. +++++++|+...+-.+..+.-+..+=---++++. +..+.+--.+|.
T Consensus 332 ~kvvqeYd~hLg~i-~~i~F~~~g~rFissS--Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAI-LDITFVDEGRRFISSS--DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY 408 (503)
T ss_pred hHHHHHHHhhhhhe-eeeEEccCCceEeeec--cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence 35889998877776 7888888899999988 7789999999988654444222110001134432 345555566777
Q ss_pred EEEEECCC---CcEEEEEecCCCceeE----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019091 172 GFIYDQNN---LNKLEEFTHQMKDGWG----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 172 v~V~D~~t---l~~i~ti~~~~peGwG----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
+.+|.+.. +...++|.--+-+|++ ++|||..|.--|+++.++++|-+|-+++++++..+
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence 77777542 2333444421223443 68999999999999999999999999999998874
No 182
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.10 E-value=0.1 Score=52.92 Aligned_cols=154 Identities=12% Similarity=0.057 Sum_probs=98.8
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
-.+.|+|+|.-+++.+ |+.+++.||+.|..-....+=. ..+-.-++... ++..+.--+++.|..+|+++++++++-
T Consensus 119 l~~~fsp~g~~l~tGs--GD~TvR~WD~~TeTp~~t~KgH-~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGS--GDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred EEEEecCCCceEEecC--CCceEEeeccCCCCcceeecCC-ccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc
Confidence 4678999998777866 8999999999998755554432 22333333332 234445578999999999999988753
Q ss_pred ecCC-C-------ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCe
Q 019091 187 THQM-K-------DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDC 257 (346)
Q Consensus 187 ~~~~-p-------eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~ 257 (346)
=-+. + |..-+.++..+|--+-.++.+.++|+.-.+.+..+.-.. .++. -+-+- +|.||-.. ++.+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT--~~VT---CvrwGG~gliySgS-~Drt 269 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT--ASVT---CVRWGGEGLIYSGS-QDRT 269 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc--cceE---EEEEcCCceEEecC-CCce
Confidence 2221 1 222345556655445579999999988777665544322 2322 12233 45677654 5778
Q ss_pred EEEEeCCCCeEEE
Q 019091 258 IARISHEDGVVLG 270 (346)
Q Consensus 258 I~vID~~TG~Vv~ 270 (346)
|-+-+...|+...
T Consensus 270 Ikvw~a~dG~~~r 282 (480)
T KOG0271|consen 270 IKVWRALDGKLCR 282 (480)
T ss_pred EEEEEccchhHHH
Confidence 8888888887653
No 183
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.09 E-value=0.27 Score=44.68 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=86.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCC--eeEEEEEEeCCEEEEEE-eeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCC
Q 019091 125 YGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK 201 (346)
Q Consensus 125 yg~s~V~~iDl~Tgkv~~~~~l~~~--~FgeGit~~g~~LY~lt-w~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~ 201 (346)
||+..|..+|..... ...+.+... .-...-.+.++++.++. ...+++.+||.+ .+.+.+++.......-.+|+|+
T Consensus 36 ~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 36 YGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGR 113 (194)
T ss_pred EeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCC
Confidence 455677777776554 455555432 22222344567777764 356789999986 8888888764334566789999
Q ss_pred EEEEEC-C--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEec------CCCeEEEEeCCCCeEEEE
Q 019091 202 VLFGSD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVW------QTDCIARISHEDGVVLGW 271 (346)
Q Consensus 202 ~LyvSd-G--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~------~sn~I~vID~~TG~Vv~~ 271 (346)
.|.++. | ...|.++|.++.+.+.+..-.. ...+++. +|+-+++.- .+|.+-+-+- +|+.+..
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccccCc-------EEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence 998865 3 5689999999888876655422 2346776 565443321 1333444443 4555555
Q ss_pred EEC
Q 019091 272 VLL 274 (346)
Q Consensus 272 I~l 274 (346)
.++
T Consensus 186 ~~~ 188 (194)
T PF08662_consen 186 KPF 188 (194)
T ss_pred cch
Confidence 544
No 184
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.06 E-value=0.11 Score=52.16 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=103.5
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCC---cEEEEeccCC------------CeeEEEEEEeC
Q 019091 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG---KVEAINQMEG------------SYFGEGLTLLG 159 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg---kv~~~~~l~~------------~~FgeGit~~g 159 (346)
-++++|- +.-|..-+.+.+||+|+-|++ .+..|++|=.+|+ .+.+.+..+- ..|..+=.-.+
T Consensus 227 cv~t~~~-h~ewvr~v~v~~DGti~As~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 227 CVKTFPG-HSEWVRMVRVNQDGTIIASCS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred eEEeccC-chHhEEEEEecCCeeEEEecC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 3566653 345888999999999999998 7789999999998 3333333321 11111111113
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeee
Q 019091 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~ 237 (346)
..+...--+++++-+.|..|+..+-++-- . .--|.+++|-|++|+-.-.+.+|.++|.++.+-.+++.... ++
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~-----hf 378 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE-----HF 378 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc-----ce
Confidence 34555555679999999999999999863 2 22456688889988775557899999999999888887643 35
Q ss_pred ceeeEeeCCEEEEE
Q 019091 238 LNELEFIKGEVWAN 251 (346)
Q Consensus 238 lNELE~~~G~LyaN 251 (346)
.+-|++.+...||.
T Consensus 379 vt~lDfh~~~p~Vv 392 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVV 392 (406)
T ss_pred eEEEecCCCCceEE
Confidence 56677776666654
No 185
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.02 E-value=0.23 Score=51.37 Aligned_cols=148 Identities=10% Similarity=0.084 Sum_probs=96.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCee-------EEEEEE-eCCEEEEEEeeCCEEEEEECC
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYF-------GEGLTL-LGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~F-------geGit~-~g~~LY~ltw~~~~v~V~D~~ 178 (346)
.+|.+.|.|.|+.|+. .+.++.+|....+.-...+ ...+..+ |-+..- ..+......-.+++|.++|..
T Consensus 363 ~alk~n~tg~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred EEEEECCCCceEEEec--CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 5788888888888887 6679999885443221111 1111111 100111 113344556678999999999
Q ss_pred CCcEEEEE-ecCCC-ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCC
Q 019091 179 NLNKLEEF-THQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQT 255 (346)
Q Consensus 179 tl~~i~ti-~~~~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s 255 (346)
.+..+.+| .++.| +-..++|||++|-.-+-+..|++++.++.++.+...=+. .++||-|- +|.......-.
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~------~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG------GIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC------eEEEEEEcCCCCEEEEEecC
Confidence 99999999 55422 566788999977666668899999999999987654432 25677665 44433444457
Q ss_pred CeEEEEeC
Q 019091 256 DCIARISH 263 (346)
Q Consensus 256 n~I~vID~ 263 (346)
+.+.++|.
T Consensus 515 ~~vcvldl 522 (524)
T KOG0273|consen 515 GSVCVLDL 522 (524)
T ss_pred CCceEEEe
Confidence 77888775
No 186
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.02 E-value=0.16 Score=50.24 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=86.6
Q ss_pred CcceeEEEecC---CEEEEEcCCCCCCeEEEEECCCCcEEEEe-----ccCC--CeeEEEEEEeCCEEEEEEeeC-----
Q 019091 105 AFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETGKVEAIN-----QMEG--SYFGEGLTLLGEKLFQVTWLQ----- 169 (346)
Q Consensus 105 ~FTqGL~~~~d---~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-----~l~~--~~FgeGit~~g~~LY~ltw~~----- 169 (346)
+--.||++..+ +.||.+.- .+.+|.++|-.=.++.-.- .+|. .||+ |...+++|||.=-+.
T Consensus 138 avYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFn--Iqnig~~lyVtYA~qd~~~~ 213 (336)
T TIGR03118 138 NVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFN--VQNLGGTLYVTYAQQDADRN 213 (336)
T ss_pred ceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCccCCCCCCCCCCcc--eEEECCeEEEEEEecCCccc
Confidence 33389999733 48999988 4669999987755542110 1333 4565 678899999874332
Q ss_pred --------CEEEEEECCCCcEEEEEecC--CCceeEEe--eC-----CCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccC
Q 019091 170 --------KTGFIYDQNNLNKLEEFTHQ--MKDGWGLA--TD-----GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 170 --------~~v~V~D~~tl~~i~ti~~~--~peGwGLt--~D-----g~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
+-|-|||+ +++.+.++..+ ....|||+ |- ...|.|.| |+.+|-.+|+.+++-+..+.= ..
T Consensus 214 d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~-~~ 291 (336)
T TIGR03118 214 DEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD-PD 291 (336)
T ss_pred ccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC-CC
Confidence 36778995 68999999764 34556654 42 35666767 999999999999998877654 24
Q ss_pred Ceeee
Q 019091 232 GREVR 236 (346)
Q Consensus 232 G~pv~ 236 (346)
|+|+.
T Consensus 292 G~pi~ 296 (336)
T TIGR03118 292 NHPVK 296 (336)
T ss_pred CCeEE
Confidence 56653
No 187
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=95.94 E-value=0.29 Score=47.91 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=65.7
Q ss_pred EEEEEeeC-CEEEEEECCCCcEEEEEecC--CCceeE------EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC
Q 019091 162 LFQVTWLQ-KTGFIYDQNNLNKLEEFTHQ--MKDGWG------LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 162 LY~ltw~~-~~v~V~D~~tl~~i~ti~~~--~peGwG------Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
|+..+-.. +.+.+||.++++++++++.+ .|.|++ ...|..+|+.+.....|..+|. .+++++++.+...+
T Consensus 58 L~f~n~~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Dsi~l~~~~~~~~l~~~n~-~G~~~~~~~~~~~~ 136 (333)
T PF13970_consen 58 LYFLNNYKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDSIFLFNSYAFPKLFLFNS-QGEVLKKIDLEEED 136 (333)
T ss_dssp EEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSSTTSEEEEGGGTEEEEE-T-T--EEEEEE---TT
T ss_pred EEEEcCCCcceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCceEEEecCCcceEEEEcC-CCeEEEEEecccCc
Confidence 44566665 89999999999999999874 466653 3446667776644678999995 58999999996632
Q ss_pred e---e--ee-ecee-eEeeCCEEEEEec-----------CCCeEEEEeCCCCeEEEEEEC
Q 019091 233 R---E--VR-NLNE-LEFIKGEVWANVW-----------QTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 233 ~---p--v~-~lNE-LE~~~G~LyaNv~-----------~sn~I~vID~~TG~Vv~~I~l 274 (346)
. + +. ..|+ +...++.+|.... ....++.||++++++ .++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~-~~~~l 195 (333)
T PF13970_consen 137 LEFEPSEFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKV-KWLPL 195 (333)
T ss_dssp S-------BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--E-EEEEE
T ss_pred ccccccccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCCeE-EEEeC
Confidence 1 1 11 1233 3334677787653 123688999999998 66764
No 188
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.31 Score=49.79 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=106.1
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECC--CCcEEEEe-----ccC-----CCee------EEE
Q 019091 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALE--TGKVEAIN-----QME-----GSYF------GEG 154 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~--Tgkv~~~~-----~l~-----~~~F------geG 154 (346)
-.|+.-+|-...-||.=|.|+|||+||+++|..++-. ...|.. .||+++.- ..+ .+.| ..|
T Consensus 165 ~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~-~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qG 243 (399)
T COG2133 165 KVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPA-LAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQG 243 (399)
T ss_pred cEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcc-cccCccccccceeeeccCcccccCCCCCCcceEEeccCCccc
Confidence 5567777765578889999999999999999642211 222222 24444222 111 1111 124
Q ss_pred EEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEE---ECCCCeEEEEeCCCCcEEEEEEec
Q 019091 155 LTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG---SDGSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 155 it~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Lyv---SdGs~~l~vIDp~T~kvi~~I~V~ 229 (346)
++.+. ++||.+......+.. ...+..+..+.-+||=+++-|+...- -++.-....+.| .+..-..+.
T Consensus 244 l~w~P~tg~Lw~~e~g~d~~~~-----~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p-~~~~~~h~A-- 315 (399)
T COG2133 244 LAWHPVTGALWTTEHGPDALRG-----PDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQP-VYTWAPHIA-- 315 (399)
T ss_pred eeecCCCCcEEEEecCCCcccC-----cccccccccCCccCCceeccCcccCccccCCCcccccccCC-ceeeccccc--
Confidence 44443 466666544433311 22334444445577777764432211 111111111111 111111110
Q ss_pred cCCeeeeeceeeEeeC--------CEEEEEecCCCeEEEEeCCCC-eE--EEEEECCchhhhhhhccCCCCceeeEEEEe
Q 019091 230 YKGREVRNLNELEFIK--------GEVWANVWQTDCIARISHEDG-VV--LGWVLLPNLRERLVAAGYNGIDVLNGIAWD 298 (346)
Q Consensus 230 ~~G~pv~~lNELE~~~--------G~LyaNv~~sn~I~vID~~TG-~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d 298 (346)
| --|.|.+ |.+|+.-..+-.+.+.+++-+ +| .+.+.- +.. .-+-+++..
T Consensus 316 ----p----sGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~-d~~-----------gR~~dV~v~ 375 (399)
T COG2133 316 ----P----SGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSG-DLG-----------GRPRDVAVA 375 (399)
T ss_pred ----c----ceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEec-CCC-----------CcccceEEC
Confidence 1 1133443 578887766667888888888 33 344432 111 246789999
Q ss_pred CCCCEEEEecCCCCcEEEEEE
Q 019091 299 SNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 299 ~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+|+-.|+.|....+.||+|..
T Consensus 376 ~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 376 PDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred CCCeEEEeecCCCCeEEEecC
Confidence 999988888888889999864
No 189
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=95.89 E-value=0.21 Score=49.66 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=69.0
Q ss_pred eeeeEEEEEEecCCCCcceeEEEecCCEEEEEcC-C-------C--CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC
Q 019091 90 IYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTG-L-------Y--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG 159 (346)
Q Consensus 90 ~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStG-l-------y--g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g 159 (346)
.+...-+..+....+.=..||++.++.--|+++- . . -.+.=.++|..+++++.. +--|+|+--.++
T Consensus 137 ~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~----GLsmPhSPRWhd 212 (335)
T TIGR03032 137 LWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVAS----GLSMPHSPRWYQ 212 (335)
T ss_pred ccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEc----CccCCcCCcEeC
Confidence 3333444555444455558999974334787642 1 0 012233478888876533 222344446678
Q ss_pred CEEEEEEeeCCEEEEEECCCC--cEEEEEecCCCceeEEeeCCCEEEEEC
Q 019091 160 EKLFQVTWLQKTGFIYDQNNL--NKLEEFTHQMKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl--~~i~ti~~~~peGwGLt~Dg~~LyvSd 207 (346)
++||++++..+.+..+|++++ +.+..+|-. +-|.+ ..|..+||+-
T Consensus 213 grLwvldsgtGev~~vD~~~G~~e~Va~vpG~-~rGL~--f~G~llvVgm 259 (335)
T TIGR03032 213 GKLWLLNSGRGELGYVDPQAGKFQPVAFLPGF-TRGLA--FAGDFAFVGL 259 (335)
T ss_pred CeEEEEECCCCEEEEEcCCCCcEEEEEECCCC-Ccccc--eeCCEEEEEe
Confidence 999999999999999998766 555555532 45444 4499999964
No 190
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.89 E-value=0.11 Score=53.04 Aligned_cols=154 Identities=12% Similarity=0.053 Sum_probs=95.2
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
=+.++||++-.+++| -+..+..||.+||......+-+ -.+---+--+++.+ +++--.++.+...|.+ +..++.-
T Consensus 274 yi~wSPDdryLlaCg--~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACG--FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEEECCCCCeEEecC--chHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCC-cchhhcc
Confidence 477889999888888 4557999999999876655433 11101111112222 4444445666666643 3334333
Q ss_pred ec---CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe-eCCEEEEEecCCCeEEEEe
Q 019091 187 TH---QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IKGEVWANVWQTDCIARIS 262 (346)
Q Consensus 187 ~~---~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~-~~G~LyaNv~~sn~I~vID 262 (346)
.. +.-.-.++|+||++++....+..+..++.++...++.|.-.. |+.. +.. .||++...+-..+.|-.=|
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its---~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITS---FSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeE---EEEcCCCcEEEEEcccCeeEEee
Confidence 22 212456789999999998888899999988866655554432 4432 212 2565554444688888888
Q ss_pred CCCCeEEEEE
Q 019091 263 HEDGVVLGWV 272 (346)
Q Consensus 263 ~~TG~Vv~~I 272 (346)
.+..+++..+
T Consensus 424 l~e~~lv~kY 433 (519)
T KOG0293|consen 424 LEENKLVRKY 433 (519)
T ss_pred cchhhHHHHh
Confidence 8877665544
No 191
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.89 E-value=0.23 Score=53.64 Aligned_cols=204 Identities=14% Similarity=0.118 Sum_probs=123.7
Q ss_pred eeEEEEEEecCCCCcceeEEEecC-----CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeC-CEEEE
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAEN-----DTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQ 164 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d-----~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g-~~LY~ 164 (346)
+++-+++.|....- +|..+-++ +..+.+.| |++.++.||.++++...+...++ .-+-.++.... +++..
T Consensus 223 ~~~~l~~lp~ye~~--E~vv~l~~~~~~~~~~~~TaG--~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 223 QYKKLKTLPLYESL--ESVVRLREELGGKGEYIITAG--GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred hhhhhheechhhhe--eeEEEechhcCCcceEEEEec--CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 34555566653332 56666555 45778888 78899999999999877665442 22333444433 44554
Q ss_pred EEeeCCEEEEEECCCCcEEEEEecCCCceeE---EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019091 165 VTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 165 ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG---Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
+| .++.+++||.+++++.++|---..|=.- +-++.++|.|+--+..+.++|..|..-. |..|- -. -++-|
T Consensus 299 vt-aeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH-~e---~vlSL 371 (775)
T KOG0319|consen 299 VT-AEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGH-TE---AVLSL 371 (775)
T ss_pred EE-ccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeCc-hh---heeee
Confidence 44 3678899999999999998621112222 3355689998766778888888876643 44432 11 23345
Q ss_pred E-eeCCEEEEEecCCCeE--EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019091 242 E-FIKGEVWANVWQTDCI--ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 242 E-~~~G~LyaNv~~sn~I--~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
. +..|-++|+.-.++++ .++|-...+. .+. ++ ..--.+..-++|.+-.+-.|||++-+.-+|-.=
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~~~-------~~~---a~-~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCSKS-------LCV---AQ-ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcchh-------hhh---hh-hcccccccceeeecccCccEEEEecCCceEEEe
Confidence 5 4567788888766664 3442222221 011 00 011133556788888888999999887765433
No 192
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.86 E-value=0.69 Score=47.05 Aligned_cols=83 Identities=10% Similarity=0.025 Sum_probs=60.3
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe------CCEEEEEEeeCCEEEEEE
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL------GEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~------g~~LY~ltw~~~~v~V~D 176 (346)
.+.|.+-++.+|||+.+.|.-+ +++|..||+++|+.+.+.--+....-.+++.. +.+.++..-+++.+.|.|
T Consensus 156 H~~WVlcvawsPDgk~iASG~~--dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSK--DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred CccEEEEEEECCCcchhhcccc--CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 4678899999999998888664 45999999999987666544433333444443 245667778888888888
Q ss_pred CCCCcEEEEEe
Q 019091 177 QNNLNKLEEFT 187 (346)
Q Consensus 177 ~~tl~~i~ti~ 187 (346)
..-++.+-.+.
T Consensus 234 ~~~~~~~~~ls 244 (480)
T KOG0271|consen 234 TKLGTCVRTLS 244 (480)
T ss_pred ccCceEEEEec
Confidence 87777666554
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.86 E-value=0.16 Score=54.44 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=109.0
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe------------eCCEEEEEECCCCcEE
Q 019091 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW------------LQKTGFIYDQNNLNKL 183 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw------------~~~~v~V~D~~tl~~i 183 (346)
.+|-+++ ++..|..|-+.++-.......+.. -++.++++||-+-| ++-+|-+.|.++.+..
T Consensus 641 ~rLAVa~---ddg~i~lWr~~a~gl~e~~~tPe~----~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~ 713 (1012)
T KOG1445|consen 641 ERLAVAT---DDGQINLWRLTANGLPENEMTPEK----ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY 713 (1012)
T ss_pred HHeeecc---cCceEEEEEeccCCCCcccCCcce----eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh
Confidence 4677765 345888888887765444444432 26677788876555 4678888999888887
Q ss_pred EEEec--CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE---EEEEEeccCCeeeeeceeeEee-CCE-EEEEecCC-
Q 019091 184 EEFTH--QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV---IRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQT- 255 (346)
Q Consensus 184 ~ti~~--~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv---i~~I~V~~~G~pv~~lNELE~~-~G~-LyaNv~~s- 255 (346)
-++.- +.--|.+-++||+++-.---+.+|.|..|...+. .+.-.|+..|-. +-|+ ||+ |.+.-+..
T Consensus 714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgAR------i~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGAR------ILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCccee------EEEEecCcEEEEeccccc
Confidence 77753 1235666788999876655688999999988664 122223222222 2222 444 33332221
Q ss_pred --CeEEEEeCCCCe--EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 256 --DCIARISHEDGV--VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 256 --n~I~vID~~TG~--Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
..|.+-|.++.. -+.+.-+ +. .+..-+|. ||+|.+.||+|||..-++|--++.
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~l-Dv--------aps~LvP~---YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVL-DV--------APSPLVPH---YDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeee-cc--------cCcccccc---ccCCCceEEEecCCCceEEEEEec
Confidence 234555544422 2222211 11 13344665 999999999999999988776664
No 194
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=95.85 E-value=0.18 Score=49.62 Aligned_cols=154 Identities=15% Similarity=0.064 Sum_probs=103.0
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCEEEEEECCCC
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
-+....|+.+..|+...+|+| .+-+|+.||.+||+..++.+.... |--.+.+ .|-.+...--.++++-++|..+.
T Consensus 89 HsgAVM~l~~~~d~s~i~S~g--tDk~v~~wD~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 89 HSGAVMELHGMRDGSHILSCG--TDKTVRGWDAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred ccceeEeeeeccCCCEEEEec--CCceEEEEecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 355568999999897777888 667999999999999999887654 3333443 23456666778999999999999
Q ss_pred cEEEEE--ecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019091 181 NKLEEF--THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 181 ~~i~ti--~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
+.++++ +++. -..++.-++..++..-=+|.|-++|+...+......=.. -++..+- + ..+|.-.-.+.+++++
T Consensus 166 ~~~~t~~~kyql-tAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~--DtIt~ls-l-s~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 166 EAIKTFENKYQL-TAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA--DTITGLS-L-SRYGSFLLSNSMDNTV 240 (338)
T ss_pred chhhccccceeE-EEEEecccccceeeccccCceeeeccccCcceEEeeccc--CceeeEE-e-ccCCCccccccccceE
Confidence 999998 4441 223333345555443338999999998877765544322 2443321 1 1234333345578888
Q ss_pred EEEeCC
Q 019091 259 ARISHE 264 (346)
Q Consensus 259 ~vID~~ 264 (346)
-+.|.+
T Consensus 241 rvwd~r 246 (338)
T KOG0265|consen 241 RVWDVR 246 (338)
T ss_pred EEEEec
Confidence 888765
No 195
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.81 E-value=0.61 Score=45.37 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCCCeEEEEECC--CCcEEEEeccC-CCeeEEEEEEeCCEEEEEEee-----------CCEEEEEECCCC
Q 019091 115 NDTLFESTGLYGRSSVRRVALE--TGKVEAINQME-GSYFGEGLTLLGEKLFQVTWL-----------QKTGFIYDQNNL 180 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~-----------~~~v~V~D~~tl 180 (346)
+++||+..|. ..+.+.++|++ +.+-....+++ ......+++..+++||+.--. -+.+++||+.+.
T Consensus 17 ~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 5899998774 45788999974 34444444555 233455678889999998543 246999998875
Q ss_pred cEEEEE-ecC-CCceeE-EeeCCCEEEEECC
Q 019091 181 NKLEEF-THQ-MKDGWG-LATDGKVLFGSDG 208 (346)
Q Consensus 181 ~~i~ti-~~~-~peGwG-Lt~Dg~~LyvSdG 208 (346)
+-..-- +.+ ...|-+ ++.-+++||+.=|
T Consensus 96 ~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 96 SWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred EEecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence 543321 222 112333 3245678888543
No 196
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.72 E-value=0.29 Score=48.61 Aligned_cols=196 Identities=13% Similarity=0.177 Sum_probs=128.0
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCC------------CcEEEEeccCCCee--E---EEEEEeC-CEEEEEEee
Q 019091 107 TQGLLYAENDTLFESTGLYGRSSVRRVALET------------GKVEAINQMEGSYF--G---EGLTLLG-EKLFQVTWL 168 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~T------------gkv~~~~~l~~~~F--g---eGit~~g-~~LY~ltw~ 168 (346)
.+--+|++||.|+-+.+ -+-+|.++|..- |..-+++++=...+ . --+..+. +.|.+..-+
T Consensus 115 cR~aafs~DG~lvATGs--aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr 192 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGS--ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR 192 (430)
T ss_pred eeeeeeCCCCcEEEccC--CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC
Confidence 36778999999887655 567899998762 11111111100000 0 1122222 568888889
Q ss_pred CCEEEEEECCCCcEEEEEecC----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019091 169 QKTGFIYDQNNLNKLEEFTHQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
++.+-.||-..-...+.|++- .---..+.|-|+.|.+.-....+.+.|.+|++--..-.- ++++ -..++...|-
T Consensus 193 D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP-d~qh-t~ai~~V~Ys 270 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP-DDQH-TGAITQVRYS 270 (430)
T ss_pred CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc-cccc-ccceeEEEec
Confidence 999999998766665655541 112334678899999977788999999999876422221 1111 1233445555
Q ss_pred -CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC-CcEEEE
Q 019091 245 -KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW-PKLYEI 317 (346)
Q Consensus 245 -~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W-p~l~ev 317 (346)
.|.|||+--.+..|-.-|--+++++.+|. .. -++.-....-|+.+++.++-.||.. -+|+||
T Consensus 271 ~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-----~A------H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 271 STGSLYVTASKDGAIKLWDGVSNRCVRTIG-----NA------HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred CCccEEEEeccCCcEEeeccccHHHHHHHH-----hh------cCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 68999999999999999999999998882 11 1234456677999999999999875 355555
No 197
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.68 E-value=0.73 Score=49.90 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=116.5
Q ss_pred EecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-C-CEEEEEEeeCCEEEEEE
Q 019091 99 FPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-G-EKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 99 ~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g-~~LY~ltw~~~~v~V~D 176 (346)
+-|...-| |..|+|+.++++|+. ++++|+.|.++|-.-+-... +..++.+.... . +..|+..--+++.-++.
T Consensus 448 ~GH~GPVy--g~sFsPd~rfLlScS--ED~svRLWsl~t~s~~V~y~--GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 448 YGHSGPVY--GCSFSPDRRFLLSCS--EDSSVRLWSLDTWSCLVIYK--GHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred ecCCCcee--eeeecccccceeecc--CCcceeeeecccceeEEEec--CCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 45655554 999999999999988 78899999999876544443 22222222221 2 33333334455555566
Q ss_pred CCCCcEEEEEecC-CCce-eEEeeCCCEEEEECC--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEE
Q 019091 177 QNNLNKLEEFTHQ-MKDG-WGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWAN 251 (346)
Q Consensus 177 ~~tl~~i~ti~~~-~peG-wGLt~Dg~~LyvSdG--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaN 251 (346)
.+.-+.+.-|.-. .-.+ ..+.|+.. |++.| +.++..+|..|+..++... | +-.|+. .|.|- +|+-.|.
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~-G-H~~~V~---al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFT-G-HKGPVT---ALAFSPCGRYLAS 594 (707)
T ss_pred cccCCchhhhcccccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEec-C-CCCceE---EEEEcCCCceEee
Confidence 5554554444321 1222 45666666 77776 5599999999999876662 2 334544 24444 6766666
Q ss_pred ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 252 VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
--..+.|.+=|..+|+.+..+ ++ + -+.-+-|.|+.+|..|-+.|..
T Consensus 595 g~ed~~I~iWDl~~~~~v~~l-----~~----H----t~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGSLVKQL-----KG----H----TGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred cccCCcEEEEEcCCCcchhhh-----hc----c----cCceeEEEEecCCCEEEecCCC
Confidence 666778888899999876554 11 1 2355778999998877666643
No 198
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.67 E-value=0.17 Score=51.90 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=88.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEE
Q 019091 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVL 203 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~L 203 (346)
+.+.++|+++|+-..........+.-...++|++|..+.-+ +-.++++|..+....+ +... .-.+-.++|||+++
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~i 296 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKI 296 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEE
Confidence 78999999999887777777766677788889887776544 4569999988777433 4432 11222478999875
Q ss_pred -EEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCE--EEEEecCCC--eEEEEeCCCCeE
Q 019091 204 -FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE--VWANVWQTD--CIARISHEDGVV 268 (346)
Q Consensus 204 -yvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~--LyaNv~~sn--~I~vID~~TG~V 268 (346)
|+|| |.-+|+..|++..++ .+++-...+.- +..--.||+ +|++ ...+ .|.+-|+.++.-
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~----~p~~SpdG~~i~~~~-~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS----NPVWSPDGDKIVFES-SSGGQWDIDKNDLASGGK 362 (425)
T ss_pred EEEeCCCCCcceEEECCCCCce-eEeeccCCCCc----CccCCCCCCEEEEEe-ccCCceeeEEeccCCCCc
Confidence 7788 577999999998877 44444332221 111123553 4455 2223 477777877764
No 199
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.67 E-value=0.089 Score=53.47 Aligned_cols=120 Identities=12% Similarity=0.072 Sum_probs=86.6
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC-EEEEEEeeCCEEEEEECCCCcEE
Q 019091 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~-~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.-..+++|+|++.-|+++. +++.|.+||..-.|....+ -+.+.-..-++.+.. -|.++--+++.|-..|+++++.+
T Consensus 181 eaIRdlafSpnDskF~t~S--dDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCS--DDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhheeccCCCCceeEEec--CCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 4458999999888888888 7789999999988765555 222221222344443 35556678889999999999999
Q ss_pred EEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019091 184 EEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
.++..- .--+.-+.+++.+|...-.+..+.++|-.+++.+.+..
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR 303 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh
Confidence 988642 11344567888888776668899999999888765444
No 200
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.64 E-value=0.3 Score=47.74 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=49.4
Q ss_pred CCeEEEEeCCCCcEEEEEEeccC----------------------CeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCC
Q 019091 209 SSMLYQIDPQTLKVIRKDIVRYK----------------------GREVRNLNELEFI-KGEVWANVWQTDCIARISHED 265 (346)
Q Consensus 209 s~~l~vIDp~T~kvi~~I~V~~~----------------------G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~T 265 (346)
++.+..||++|++++-++.+.++ ..-.-++|-++.. +|.+.+..=..+.|.+||++|
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Confidence 67899999999999877766541 0122356766655 567788888899999999999
Q ss_pred CeEEEEE
Q 019091 266 GVVLGWV 272 (346)
Q Consensus 266 G~Vv~~I 272 (346)
|+|+=++
T Consensus 175 G~I~W~l 181 (299)
T PF14269_consen 175 GKIIWRL 181 (299)
T ss_pred CcEEEEe
Confidence 9998777
No 201
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.62 E-value=0.99 Score=46.82 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=80.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEE-EEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC-----CceeEEeeC
Q 019091 126 GRSSVRRVALETGKVEAINQMEGSYFGEGL-TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-----KDGWGLATD 199 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGi-t~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~-----peGwGLt~D 199 (346)
.......+|.+ |.|+-..+++...... + -+.++.++...- +.+..+|. .++++..+..+. -.-+...++
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~-~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNS-FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SS-EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECCC-ccEEEEEccCccccce-eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCC
Confidence 34566777765 7777666654322110 2 234455555443 77888886 467777766541 122334456
Q ss_pred CCEEEEEC---------C----CCeEEEEeCCCCcEEEEEEeccC---Ce-------------------eeeeceeeEee
Q 019091 200 GKVLFGSD---------G----SSMLYQIDPQTLKVIRKDIVRYK---GR-------------------EVRNLNELEFI 244 (346)
Q Consensus 200 g~~LyvSd---------G----s~~l~vIDp~T~kvi~~I~V~~~---G~-------------------pv~~lNELE~~ 244 (346)
|+.|+.+. + .+.|..+| .|++++..+...+. -+ --.++|.+.|.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 88887654 1 67899999 89999999988662 11 11468888887
Q ss_pred C--CEEEEEecCCCeEEEEeCCCCeEEEEE
Q 019091 245 K--GEVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 245 ~--G~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
. +.|.++.-..+.|.+||.+|++|+-.+
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 4 799999999999999999999996666
No 202
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.60 E-value=1.2 Score=42.97 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=60.7
Q ss_pred eEEEecCCEEEEEcCCC---CCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeC----CEEEEEECCCC
Q 019091 109 GLLYAENDTLFESTGLY---GRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQ----KTGFIYDQNNL 180 (346)
Q Consensus 109 GL~~~~d~~LyeStGly---g~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~----~~v~V~D~~tl 180 (346)
+.++. +++||+..|.. ..+.+.+||+.+.+-...-+++. ...+..++..+++||+.--.+ ..+++||+++.
T Consensus 118 ~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 118 SACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 34444 58999987742 23679999999998655444542 233445667889999985432 35789998875
Q ss_pred cE--EEEEecC-CC----ceeEEeeCCCEEEEECC
Q 019091 181 NK--LEEFTHQ-MK----DGWGLATDGKVLFGSDG 208 (346)
Q Consensus 181 ~~--i~ti~~~-~p----eGwGLt~Dg~~LyvSdG 208 (346)
+- +...+.+ .| ..-++...++++|+.=|
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 43 3322111 11 23345666778888543
No 203
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=95.57 E-value=0.48 Score=45.47 Aligned_cols=179 Identities=17% Similarity=0.238 Sum_probs=114.5
Q ss_pred CCEEEEEcCCCCCCeEEEEEC----CCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-
Q 019091 115 NDTLFESTGLYGRSSVRRVAL----ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl----~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~- 189 (346)
+++.|+.++ +....|..+.. ..|..-..+.+|...-|-|-.+.++-+|-.-.....+.+||.+++.+..+...+
T Consensus 30 ~~r~~~~~~-~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~ 108 (249)
T KOG3545|consen 30 DDRIYVMNY-FDGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPY 108 (249)
T ss_pred cCceEEecc-ccCceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccc
Confidence 456666633 45556666644 334455566677666677778888888888888899999999997777765421
Q ss_pred ------CCceeE------EeeCCC--E-EEEECCCC---eEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEE
Q 019091 190 ------MKDGWG------LATDGK--V-LFGSDGSS---MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (346)
Q Consensus 190 ------~peGwG------Lt~Dg~--~-LyvSdGs~---~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaN 251 (346)
.|..|+ |+-|.. | +|.+++++ .|+.+||.|.++.++..+..+.+.++ +.=.+=|-|||-
T Consensus 109 a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~---~aF~iCGvLY~v 185 (249)
T KOG3545|consen 109 AGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAG---NAFMICGVLYVV 185 (249)
T ss_pred cccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCcC---ceEEEeeeeEEE
Confidence 245555 333444 3 34466533 44789999999999998876433322 222446888863
Q ss_pred e-cC-CCe-E-EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 252 V-WQ-TDC-I-ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 252 v-~~-sn~-I-~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
. .. .++ | ...|+.+|+- ..++++ +... -.-...|-|+|..++||+=
T Consensus 186 ~S~~~~~~~i~yaydt~~~~~-~~~~ip-f~N~--------y~~~~~idYNP~D~~LY~w 235 (249)
T KOG3545|consen 186 HSYNCTHTQISYAYDTTTGTQ-ERIDLP-FPNP--------YSYATMIDYNPRDRRLYAW 235 (249)
T ss_pred eccccCCceEEEEEEcCCCce-eccccc-ccch--------hhhhhccCCCcccceeeEe
Confidence 2 22 233 3 5889999886 455442 2211 1234668899999999984
No 204
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.54 E-value=0.18 Score=54.01 Aligned_cols=154 Identities=15% Similarity=0.185 Sum_probs=88.7
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCC-CcEEEEEEeccCCeeee
Q 019091 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVRYKGREVR 236 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T-~kvi~~I~V~~~G~pv~ 236 (346)
+.+|... .+.++++|..|.+.+-+..- + .-.-..-+.||+.|-+|+-+.+|.++||.+ ++-+.+.+-.. |
T Consensus 142 gil~s~a--~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~-~---- 214 (1012)
T KOG1445|consen 142 GILASGA--HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG-G---- 214 (1012)
T ss_pred ceEEecc--CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc-c----
Confidence 4455444 68899999999988877752 1 001112467899999999999999999976 33332221111 0
Q ss_pred eceeeEeeCC-EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccC---CCCceeeEEEEeCCCCEEEEecCCCC
Q 019091 237 NLNELEFIKG-EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGY---NGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 237 ~lNELE~~~G-~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~---~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
.-|. -+|+.+|..=.-.-+|.+--+-+..+|+..+..-+..... ...-+| -||||.+.||.+||.-.
T Consensus 215 ------~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiP---l~DpDt~llfLaGKG~~ 285 (1012)
T KOG1445|consen 215 ------MRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIP---LYDPDTRLLFLAGKGTN 285 (1012)
T ss_pred ------chhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEee---eecCCCceEEEecCCcc
Confidence 0122 3777776432222333333333334443222110000000 111123 39999999999999999
Q ss_pred cEEEEEEeeccccccCC
Q 019091 313 KLYEINLREMKRERKDG 329 (346)
Q Consensus 313 ~l~ev~l~~~~~~~~~~ 329 (346)
+||-.+.++..--.-++
T Consensus 286 ~l~~lE~~d~qPyLs~v 302 (1012)
T KOG1445|consen 286 KLFMLEMQDRQPYLSHV 302 (1012)
T ss_pred eEEEEEecCCCcchhhh
Confidence 99999987644443444
No 205
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=95.50 E-value=1.5 Score=43.40 Aligned_cols=197 Identities=15% Similarity=0.220 Sum_probs=115.2
Q ss_pred ecCCCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCc------EEEEe-------ccCCCeeEEEEEE---eCCEE
Q 019091 100 PHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGK------VEAIN-------QMEGSYFGEGLTL---LGEKL 162 (346)
Q Consensus 100 phd~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgk------v~~~~-------~l~~~~FgeGit~---~g~~L 162 (346)
||...- .-|.+++. |++.+|.| .++.|.+||++.-. .+... .-....|+..-+. .+.-.
T Consensus 41 ~HgGsv--NsL~id~tegrymlSGg--adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSV--NSLQIDLTEGRYMLSGG--ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCcc--ceeeeccccceEEeecC--CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 465444 46666653 58889988 56699999997532 11111 1122345543333 24558
Q ss_pred EEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeC--CCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCe-eee-
Q 019091 163 FQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATD--GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGR-EVR- 236 (346)
Q Consensus 163 Y~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~D--g~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~-pv~- 236 (346)
|...-.++.+-|.|++|++..-.|..+ +-+--+++|- ...|+.+- .+.+|..-|.+.+.-.+++.=..+|. .+.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 888889999999999999999999875 2233334543 35566643 47789999999888777665544332 111
Q ss_pred -eceeeEee----CC--EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019091 237 -NLNELEFI----KG--EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 237 -~lNELE~~----~G--~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
.-+|.-.. || ++|=---.+.+..+.|...++-.-.+ . +...-....||+||+.++..++..|-
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~-----~-----~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPIL-----K-----TNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccc-----c-----ccccccceeeeeeecccchhhhhccC
Confidence 11121111 33 34422223456666666665321111 1 00111346799999999998876654
Q ss_pred C
Q 019091 310 L 310 (346)
Q Consensus 310 ~ 310 (346)
.
T Consensus 267 d 267 (397)
T KOG4283|consen 267 D 267 (397)
T ss_pred c
Confidence 3
No 206
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.43 E-value=0.43 Score=48.51 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=68.7
Q ss_pred eEEEEEEecCC----CCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEE
Q 019091 93 IQVVNEFPHDP----RAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 93 ~~Vv~t~phd~----~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~lt 166 (346)
.+|++--|.+. --|+|--. .+|| +|+.++-..|...+..+|++|+++.+-...+ ...||+=++...+.+|- -
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~f-t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y-v 98 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCF-TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY-V 98 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B--TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE-E
T ss_pred ceEEEecCCCCcccceeecCCCc-CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE-E
Confidence 45665555432 23444333 3456 5444444568999999999999988777764 45677766767777643 2
Q ss_pred eeCCEEEEEECCCCcEEEEEecCCCceeE------EeeCCCEEEEEC-----C-----------------CCeEEEEeCC
Q 019091 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWG------LATDGKVLFGSD-----G-----------------SSMLYQIDPQ 218 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~~peGwG------Lt~Dg~~LyvSd-----G-----------------s~~l~vIDp~ 218 (346)
+.++.+..+|.+|++...-+.. |++|. +..|+..+.... . ...|..||..
T Consensus 99 ~~~~~l~~vdL~T~e~~~vy~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEERVVYEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp ETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred ECCCeEEEEECCcCcEEEEEEC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 3467999999999987554444 23333 455665543211 1 2468899999
Q ss_pred CCcEEEEEEec
Q 019091 219 TLKVIRKDIVR 229 (346)
Q Consensus 219 T~kvi~~I~V~ 229 (346)
|++...-+...
T Consensus 177 tG~~~~v~~~~ 187 (386)
T PF14583_consen 177 TGERKVVFEDT 187 (386)
T ss_dssp T--EEEEEEES
T ss_pred CCceeEEEecC
Confidence 98865444443
No 207
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.31 E-value=0.19 Score=51.28 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=77.4
Q ss_pred cCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC---CCceeE---
Q 019091 122 TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWG--- 195 (346)
Q Consensus 122 tGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---~peGwG--- 195 (346)
+|- -+..|+.||..+++....+++++..=..-+...+.+|... -.++.+-++|..+.++..+|..+ -..-|.
T Consensus 317 SgH-~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 317 SGH-FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred ecc-cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 343 3457999999999999999998865343333445566665 78899999999999999999753 112243
Q ss_pred EeeCCCEEEEECC--CCeEEEEeCCCCcEEEEEEec
Q 019091 196 LATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 196 Lt~Dg~~LyvSdG--s~~l~vIDp~T~kvi~~I~V~ 229 (346)
++||+. |++-| +..|++++..|.|+.+.+.-.
T Consensus 395 fSpd~~--YvaAGS~dgsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 395 FSPDGS--YVAAGSADGSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred ECCCCc--eeeeccCCCcEEEEEccCceEEEEeccC
Confidence 788888 44443 668999999999998877663
No 208
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.29 E-value=1.4 Score=46.05 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=95.1
Q ss_pred CC-EEEEEcCCCCCCeEEEEECCCCcEEEE-e--ccC----------CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 115 ND-TLFESTGLYGRSSVRRVALETGKVEAI-N--QME----------GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 115 d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~-~--~l~----------~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
|| ++..+.| | .|..+|++|.++..- + ++. +.-|.|-.++.++..+++ ...+++|+.+....
T Consensus 277 DGkrIvFq~~--G--dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~-VSRGkaFi~~~~~~ 351 (668)
T COG4946 277 DGKRIVFQNA--G--DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIAL-VSRGKAFIMRPWDG 351 (668)
T ss_pred CCcEEEEecC--C--cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEE-EecCcEEEECCCCC
Confidence 44 5666665 4 788899988775332 1 221 234677777877665554 34689999998765
Q ss_pred cEEEEEecCCCceeE---EeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecC
Q 019091 181 NKLEEFTHQMKDGWG---LATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ 254 (346)
Q Consensus 181 ~~i~ti~~~~peGwG---Lt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~ 254 (346)
-. ++++.+.|.- +..|++.+.+ ++..+.|-+.|..+.++.+... +++++-.+... || ++.|+| .
T Consensus 352 ~~---iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------~lg~I~av~vs~dGK~~vvaN-d 421 (668)
T COG4946 352 YS---IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------DLGNIEAVKVSPDGKKVVVAN-D 421 (668)
T ss_pred ee---EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC------CccceEEEEEcCCCcEEEEEc-C
Confidence 43 3444334433 3345665555 4456789999998877653321 22222223222 45 466555 3
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019091 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
.-.|.+||.+||.|. .||-+ .....-+++|+|+.+
T Consensus 422 r~el~vididngnv~-~idkS------------~~~lItdf~~~~nsr 456 (668)
T COG4946 422 RFELWVIDIDNGNVR-LIDKS------------EYGLITDFDWHPNSR 456 (668)
T ss_pred ceEEEEEEecCCCee-Eeccc------------ccceeEEEEEcCCce
Confidence 668999999999973 34321 123456677777655
No 209
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.29 E-value=0.74 Score=48.23 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=135.1
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-EeeCC
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-TWLQK 170 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-tw~~~ 170 (346)
++.+++...-| ++| .+... ...+|+.+|.. ...|.+||++...+.+..+=.. -=-.+++...+.=|++ .-..+
T Consensus 70 ~Vp~~~k~~gd-~~~--Cv~~~-s~S~y~~sgG~-~~~Vkiwdl~~kl~hr~lkdh~-stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 70 EVPRVRKLTGD-NAF--CVACA-SQSLYEISGGQ-SGCVKIWDLRAKLIHRFLKDHQ-STVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred ccceeeccccc-hHH--HHhhh-hcceeeeccCc-CceeeehhhHHHHHhhhccCCc-ceeEEEEecCCcceeEEeccCC
Confidence 46667776665 555 33332 13488877732 2478889999444444333222 2235566655555555 45678
Q ss_pred EEEEEECCCCcEEEEEecCCCceeE---EeeCCCEEEEECC-CCeEEEEeCCCCcEEEEE-Eec---cCCeeeeeceeeE
Q 019091 171 TGFIYDQNNLNKLEEFTHQMKDGWG---LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKD-IVR---YKGREVRNLNELE 242 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~peGwG---Lt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I-~V~---~~G~pv~~lNELE 242 (346)
.+.+-..+|.....+|..+.++-.- .++-.+.|.++-+ ...|+++|...+.-+... ++. ..|.-+...||
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne-- 221 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE-- 221 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc--
Confidence 9999999999998889875333332 3556677777554 669999998776554322 221 23444444444
Q ss_pred eeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019091 243 FIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 243 ~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
.|+|.+.++..|...|..+.+-+.+|-.+ .-+-.+||.++| ..+++|-.-++||.-++...
T Consensus 222 ----~l~vsVG~Dkki~~yD~~s~~s~~~l~y~--------------~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 222 ----ALLVSVGYDKKINIYDIRSQASTDRLTYS--------------HPLSTVAFSECG-TYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ----ceEEEecccceEEEeecccccccceeeec--------------CCcceeeecCCc-eEEEeecCCceEEEEecccC
Confidence 89999999999999999999888877431 135668898664 56788888899988887654
Q ss_pred ccc
Q 019091 323 KRE 325 (346)
Q Consensus 323 ~~~ 325 (346)
+++
T Consensus 283 k~P 285 (673)
T KOG4378|consen 283 KAP 285 (673)
T ss_pred CCC
Confidence 443
No 210
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.23 E-value=1.6 Score=45.09 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=41.5
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
-+++++||+.+.+.| .+..|++||.+|++-++..+- -+..++-++-.--++||.+.. +..+-+++.+.+
T Consensus 207 ~~avS~Dgkylatgg--~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGG--RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-DRSVKVWSIDQL 276 (479)
T ss_pred EEEEcCCCcEEEecC--CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-CCceEEEehhHh
Confidence 578889999888877 556889999999987666432 233333222222356775532 233344443333
No 211
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=95.22 E-value=4.2 Score=42.97 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=89.3
Q ss_pred ceeeeEEEEEEecCCCCcceeEEEecC--------CEEEEEcCCCC--------------------CCeEEEEECCCCcE
Q 019091 89 SIYTIQVVNEFPHDPRAFTQGLLYAEN--------DTLFESTGLYG--------------------RSSVRRVALETGKV 140 (346)
Q Consensus 89 ~~~t~~Vv~t~phd~~~FTqGL~~~~d--------~~LyeStGlyg--------------------~s~V~~iDl~Tgkv 140 (346)
....+.+|-.+..++.....-..+.++ +.||+++..+. ...|++|+++.|++
T Consensus 181 ~~~~~~~i~s~dl~~~~~~~~~~~~g~~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~ 260 (521)
T PF09826_consen 181 SGSNYTTITSIDLDPDKASDSTSVLGSGGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNESTTIYKFALDGGKI 260 (521)
T ss_pred CCCcEEEEEEEeCCCCCccceeEEEecCCEEEEeCCcEEEEEecccccccccchhccccccccCCCceEEEEEEccCCcE
Confidence 334566777777655544333333322 35565554433 36899999998876
Q ss_pred E--EEeccCC---CeeEEEEEEeCCEEEEEEe-----------eCCEEEEEECCCCcEEEEEecCCC--ceeEEeeCCCE
Q 019091 141 E--AINQMEG---SYFGEGLTLLGEKLFQVTW-----------LQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKV 202 (346)
Q Consensus 141 ~--~~~~l~~---~~FgeGit~~g~~LY~ltw-----------~~~~v~V~D~~tl~~i~ti~~~~p--eGwGLt~Dg~~ 202 (346)
. +...+++ +.|. +.-.++.|-++|- ..|.++|+| ++++++++++.-+| .=++.=..|++
T Consensus 261 ~y~~sg~V~G~llnqFs--mdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~ 337 (521)
T PF09826_consen 261 EYVGSGSVPGYLLNQFS--MDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDR 337 (521)
T ss_pred EEEEEEEECcEEccccc--EeccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCe
Confidence 4 3444543 3344 4556777777751 468899999 99999999984211 11223346888
Q ss_pred EEEE-C-CCCeEEEEe---CCCCcEEEEEEecc
Q 019091 203 LFGS-D-GSSMLYQID---PQTLKVIRKDIVRY 230 (346)
Q Consensus 203 LyvS-d-Gs~~l~vID---p~T~kvi~~I~V~~ 230 (346)
.|+- = ..+=+++|| |+.-+++..+++..
T Consensus 338 ~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPG 370 (521)
T PF09826_consen 338 AYLVTFRQVDPLFVIDLSDPANPKVLGELKIPG 370 (521)
T ss_pred EEEEEEeecCceEEEECCCCCCCceeeEEECcc
Confidence 8884 3 578999998 55688999999954
No 212
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.21 E-value=0.39 Score=49.49 Aligned_cols=156 Identities=11% Similarity=0.081 Sum_probs=105.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCC-------CcEEEEeccCCCeeEEEEEE---------eCCEEEEEEeeCCE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALET-------GKVEAINQMEGSYFGEGLTL---------LGEKLFQVTWLQKT 171 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~T-------gkv~~~~~l~~~~FgeGit~---------~g~~LY~ltw~~~~ 171 (346)
.-|.|++||..++|.| .++.|.+|++-+ +.+.....+.. +++.+ .+.+||.+. .+++
T Consensus 127 TcL~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~----HtlsITDl~ig~Gg~~~rl~TaS-~D~t 199 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLHIFSD----HTLSITDLQIGSGGTNARLYTAS-EDRT 199 (476)
T ss_pred eEEEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCccceeeecc----CcceeEEEEecCCCccceEEEec-CCce
Confidence 5678999999999999 667999997643 22222222211 22222 235677664 4699
Q ss_pred EEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCc---E------------EEEEEeccC-Cee
Q 019091 172 GFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLK---V------------IRKDIVRYK-GRE 234 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~k---v------------i~~I~V~~~-G~p 234 (346)
+-++|...+.++.++..+ ..-...|+|-+.++|+-...+.|++++-.+.. . ....-+|.. +.+
T Consensus 200 ~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 200 IKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA 279 (476)
T ss_pred EEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence 999999999999999876 45777889999999997778889998854433 1 111222221 233
Q ss_pred eeeceeeEe-eCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019091 235 VRNLNELEF-IKGEVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 235 v~~lNELE~-~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
+.- |++ .||.+.+.=-.++.|.+=|+.+.+++.++-
T Consensus 280 ITc---Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 280 ITC---LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeE---EEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 332 333 388888877778889999999988877763
No 213
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.20 E-value=1.6 Score=48.50 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=115.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCc---EEEEeccCCCeeEEEEEEeCCEEEEE-EeeCCEEEEEECCCCcEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGK---VEAINQMEGSYFGEGLTLLGEKLFQV-TWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk---v~~~~~l~~~~FgeGit~~g~~LY~l-tw~~~~v~V~D~~tl~~i 183 (346)
.+++... ..|.++. .++.|.+|...+++ ++.+..+|-+. +++.++.=|++ --.+-.|-+++..+....
T Consensus 60 ~~ia~~s--~~f~~~s--~~~tv~~y~fps~~~~~iL~Rftlp~r~----~~v~g~g~~iaagsdD~~vK~~~~~D~s~~ 131 (933)
T KOG1274|consen 60 SSIACYS--NHFLTGS--EQNTVLRYKFPSGEEDTILARFTLPIRD----LAVSGSGKMIAAGSDDTAVKLLNLDDSSQE 131 (933)
T ss_pred EEEeecc--cceEEee--ccceEEEeeCCCCCccceeeeeeccceE----EEEecCCcEEEeecCceeEEEEeccccchh
Confidence 4666543 2444434 56799999888765 67777777643 55655433433 444556778888888777
Q ss_pred EEEe-cCC-CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC------CeeeeeceeeEee--CCEEEEEec
Q 019091 184 EEFT-HQM-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK------GREVRNLNELEFI--KGEVWANVW 253 (346)
Q Consensus 184 ~ti~-~~~-peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~------G~pv~~lNELE~~--~G~LyaNv~ 253 (346)
+.+. +.. --+.-+.|.++.|-++..+++|+++|.+++.+..++.--.. .+++ +.+.|. +|.+-| .-
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~---~~~aW~Pk~g~la~-~~ 207 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRIC---TRLAWHPKGGTLAV-PP 207 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccccccee---eeeeecCCCCeEEe-ec
Confidence 7664 321 13444667789999999999999999999998877654221 1111 122333 455443 33
Q ss_pred CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 254 QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
-.++|.++++++++....+-. +. ...+.+-++|+|.|++|--.+
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~-~~----------~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRD-KL----------SSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred cCCeEEEEccCCceeheeecc-cc----------cccceEEEEEcCCCcEEeeec
Confidence 599999999999998777733 11 112477889999988665433
No 214
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=95.20 E-value=0.5 Score=48.08 Aligned_cols=199 Identities=16% Similarity=0.190 Sum_probs=104.9
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC-CEEEEEECCC
Q 019091 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-KTGFIYDQNN 179 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~-~~v~V~D~~t 179 (346)
|...++ -|...+|+.+.++.. .++.++.||...|+++....-...+ ..|++.+.-.=|+++--. ....+++.+.
T Consensus 122 h~~diy--dL~Ws~d~~~l~s~s--~dns~~l~Dv~~G~l~~~~~dh~~y-vqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 122 HRDDIY--DLAWSPDSNFLVSGS--VDNSVRLWDVHAGQLLAILDDHEHY-VQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred cccchh--hhhccCCCceeeeee--ccceEEEEEeccceeEeeccccccc-cceeecchhhhhhhhhccCcccceeeeee
Confidence 666675 788888887777755 6789999999999988776544332 455565532222222111 1233333333
Q ss_pred CcEEEEEec-------C-CCcee-----------------EEeeCCCEEEEECC---------CCeEEEEeCCCCcE---
Q 019091 180 LNKLEEFTH-------Q-MKDGW-----------------GLATDGKVLFGSDG---------SSMLYQIDPQTLKV--- 222 (346)
Q Consensus 180 l~~i~ti~~-------~-~peGw-----------------GLt~Dg~~LyvSdG---------s~~l~vIDp~T~kv--- 222 (346)
-+++..+.+ + ..||- .+||||..|..=.| -|..|+++-...+.
T Consensus 197 ~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~ 276 (434)
T KOG1009|consen 197 KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA 276 (434)
T ss_pred eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee
Confidence 333222220 0 01111 23455554443222 34556666544332
Q ss_pred ------EEEEEeccCCeeeee----ceeeEee---CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCC
Q 019091 223 ------IRKDIVRYKGREVRN----LNELEFI---KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGI 289 (346)
Q Consensus 223 ------i~~I~V~~~G~pv~~----lNELE~~---~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~ 289 (346)
...+.|+. .|+++ +++.++. -=++-.++-..|.|++-|+++-+-++.++ ++- .
T Consensus 277 ~lp~~~k~~lavr~--~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~--nih----y------ 342 (434)
T KOG1009|consen 277 RLPSPKKPALAVRF--SPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVD--NIH----Y------ 342 (434)
T ss_pred ecCCCCcceEEEEe--eeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEe--eee----e------
Confidence 22333322 23321 1111110 01344456679999999999977555442 111 0
Q ss_pred ceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 290 DVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 290 ~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..+--|||+++|..|+|+-. .++..-|.+
T Consensus 343 ~~iTDiaws~dg~~l~vSS~-DGyCS~vtf 371 (434)
T KOG1009|consen 343 SAITDIAWSDDGSVLLVSST-DGFCSLVTF 371 (434)
T ss_pred eeecceeecCCCcEEEEecc-CCceEEEEE
Confidence 12345999999999999853 455555544
No 215
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.18 E-value=0.11 Score=53.39 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=82.0
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE-------------E
Q 019091 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK-------------L 183 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~-------------i 183 (346)
+||-+ + .+..+..||+..|+++..+.+|..+-+..+.+.+.++|+.+. ++++|+++...+.- -
T Consensus 190 rl~Ta-S--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~ 265 (476)
T KOG0646|consen 190 RLYTA-S--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEEN 265 (476)
T ss_pred eEEEe-c--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC-cceEEeeehhcCCccccccccccccccc
Confidence 45543 3 467999999999999999999988877767777788999875 48889888766551 1
Q ss_pred EEEec--CCCce------eEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019091 184 EEFTH--QMKDG------WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 184 ~ti~~--~~peG------wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
.+++. + .++ .+++.||..|..-|.++++.++|+...+.++++..
T Consensus 266 t~~~~~~G-h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 266 TQINVLVG-HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred ceeeeecc-ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 12222 2 222 45778999998888999999999999999988874
No 216
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=95.16 E-value=3.1 Score=40.70 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=82.4
Q ss_pred eeEEE-ecCCE--EEEEcCCCCCCeEEEEECCCCcEEEEeccCC-------CeeEEEEEEeCCEEEEEE-eeCCEEEEEE
Q 019091 108 QGLLY-AENDT--LFESTGLYGRSSVRRVALETGKVEAINQMEG-------SYFGEGLTLLGEKLFQVT-WLQKTGFIYD 176 (346)
Q Consensus 108 qGL~~-~~d~~--LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-------~~FgeGit~~g~~LY~lt-w~~~~v~V~D 176 (346)
.+|.. ..+|+ |+.-... ....|.++|++++++++++++.. .++ |+....+.+|+.+ +....++++|
T Consensus 45 ~~l~~~~~~~~~yL~f~n~~-~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~--~~~~~~Dsi~l~~~~~~~~l~~~n 121 (333)
T PF13970_consen 45 YYLQSFSSDGKKYLYFLNNY-KSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPF--GFFQNLDSIFLFNSYAFPKLFLFN 121 (333)
T ss_dssp SSEEEEEETTEEEEEEEE-S-T--EEEEEETTTTEEEEEEE-BSSSTTB-TT-----EEESSSTTSEEEEGGGTEEEEE-
T ss_pred ccEEEEEcCCcEEEEEEcCC-CcceEEEEECCCCceeeeeeeeeECCCCccccc--cceEcCCceEEEecCCcceEEEEc
Confidence 35543 44564 4344431 24799999999999999998743 223 3444344444444 6789999999
Q ss_pred CCCCcEEEEEecC--CCceeEEe----------eCCCEEEEE---------C---CCCeEEEEeCCCCcEEEEEEeccCC
Q 019091 177 QNNLNKLEEFTHQ--MKDGWGLA----------TDGKVLFGS---------D---GSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 177 ~~tl~~i~ti~~~--~peGwGLt----------~Dg~~LyvS---------d---Gs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
..++++.+++.. ..+++... ..++.+|.+ + ..-.+.++|+++.++. .+.+....
T Consensus 122 -~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~-~~~l~~~~ 199 (333)
T PF13970_consen 122 -SQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKVK-WLPLPYPD 199 (333)
T ss_dssp -TT--EEEEEE---TTS-------BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--EE-EEEEE--S
T ss_pred -CCCeEEEEEecccCcccccccccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCCeEE-EEeCCChH
Confidence 678899988863 12333211 123444553 1 1336889999998874 45542210
Q ss_pred e--e--e----eecee--eEe-eCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019091 233 R--E--V----RNLNE--LEF-IKGEVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 233 ~--p--v----~~lNE--LE~-~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
. . + ....+ ..+ .+|+++.+.+.++.|.+-| .++.+ ..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~~~~~iyv~d-~~~~~-~~~~ 249 (333)
T PF13970_consen 200 KYQKYNINWDGGMFPSYSYNYFKGGKIIISFPADSEIYVYD-SNDSL-KKYS 249 (333)
T ss_dssp ------SSEEE---EEEEEET-TTTEEEEEETT-SEEEEES-SSS-E-EEEE
T ss_pred HhhhhccccCcceecceeEEEeeCCEEEEecCCCceEEEEC-CCCeE-EEEe
Confidence 0 0 0 00001 122 4689999999999999988 65555 4443
No 217
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=94.97 E-value=0.32 Score=48.49 Aligned_cols=63 Identities=14% Similarity=-0.011 Sum_probs=42.8
Q ss_pred eeCC-EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC-CCcEEEEEE
Q 019091 243 FIKG-EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL-WPKLYEINL 319 (346)
Q Consensus 243 ~~~G-~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~-Wp~l~ev~l 319 (346)
..|+ +..++.-.+++|..-|.+ |+++..||.-.+. .+-.|.+|+|+.+-++|=- .=+++|+-+
T Consensus 195 iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------------n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------------NYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-------------ccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 3454 444677778889999999 9999999883221 2346889998877777632 234555544
No 218
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.91 E-value=1 Score=45.41 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=97.2
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEE-EEEEeCCEEEE---EEeeCCEEEEEECCCCcEEEEEecC-
Q 019091 116 DTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGE-GLTLLGEKLFQ---VTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~Fge-Git~~g~~LY~---ltw~~~~v~V~D~~tl~~i~ti~~~- 189 (346)
.+|.+. +.+ +|.++|+.+.|++..+.. +++++|. ++++...--|. ..-..+.|.+||..+++.+.+|+.-
T Consensus 98 ~RLvV~--Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~ 173 (391)
T KOG2110|consen 98 KRLVVC--LEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHK 173 (391)
T ss_pred ceEEEE--Ecc--cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecC
Confidence 578888 323 699999999999999964 5777753 23333332233 3556899999999999999999852
Q ss_pred -CCceeEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCC
Q 019091 190 -MKDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 190 -~peGwGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~ 264 (346)
.=.-.++++||..|-. ||-.--|.|++..+++.+-...=|. .++ ++--|.+. ++...+..-.+++|.+.-.+
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~-~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--YPV-SIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--eee-EEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 2366678899998877 5655578899988888765554443 232 23345555 45555555667777766443
No 219
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.87 E-value=0.31 Score=50.91 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=85.9
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCe-eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~-FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
+-|-|++.. .|+.+.+ +...|+.||.....-+... .....| -|.-+.+.+..|++....+.++.+||....+...
T Consensus 168 Rll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred EEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 446777665 4777777 4559999999876533332 122222 1444555788999999999999999999999999
Q ss_pred EEecCCC-ceeEEeeCCCEEEEECCCCeEEEEeCCCCc-EEEEEEec
Q 019091 185 EFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLK-VIRKDIVR 229 (346)
Q Consensus 185 ti~~~~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~k-vi~~I~V~ 229 (346)
++.+..| .-.++.++|..|.+-+.-.+|++.|....+ .++.+.+.
T Consensus 246 ~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 246 RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred eeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 9988644 556788999999887778899999975533 34444443
No 220
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=94.80 E-value=0.24 Score=51.82 Aligned_cols=118 Identities=12% Similarity=0.169 Sum_probs=84.2
Q ss_pred CCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccC---CCeeEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019091 103 PRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~---~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
+.+|.+---+.+||+ |+++ | ..++|.+||+++-...-...++ +.-++-.+.++.+..|. --.++.|.|+|..
T Consensus 464 rdnyiRSckL~pdgrtLivG-G--eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFs-ccsdGnI~vwDLh 539 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVG-G--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS-CCSDGNIAVWDLH 539 (705)
T ss_pred cccceeeeEecCCCceEEec-c--ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee-eccCCcEEEEEcc
Confidence 557777777888886 5554 6 4789999999976533333333 33345445555555554 4568999999999
Q ss_pred CCcEEEEEecCCCcee---EEeeCCCEEEEECCCCeEEEEeCCCCcEEEE
Q 019091 179 NLNKLEEFTHQMKDGW---GLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (346)
Q Consensus 179 tl~~i~ti~~~~peGw---GLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~ 225 (346)
+-.++++|.-- ++|. .+++||.+||.---+|+|.-+|.++.+....
T Consensus 540 nq~~VrqfqGh-tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 540 NQTLVRQFQGH-TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred cceeeecccCC-CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 99999999842 4554 4889999999854499999999988776433
No 221
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.79 E-value=0.75 Score=45.38 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=101.4
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEe-eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeee
Q 019091 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt-~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~ 236 (346)
.++.|.++.|. +.+.+||..+.+....+.+++|= .-.+ .|...+|+.+-+++|..+|..|.+. -.++.+..++.
T Consensus 24 ~~~~LLvssWD-gslrlYdv~~~~l~~~~~~~~pl-L~c~F~d~~~~~~G~~dg~vr~~Dln~~~~---~~igth~~~i~ 98 (323)
T KOG1036|consen 24 SSSDLLVSSWD-GSLRLYDVPANSLKLKFKHGAPL-LDCAFADESTIVTGGLDGQVRRYDLNTGNE---DQIGTHDEGIR 98 (323)
T ss_pred cCCcEEEEecc-CcEEEEeccchhhhhheecCCce-eeeeccCCceEEEeccCceEEEEEecCCcc---eeeccCCCceE
Confidence 35778888874 89999999999888888886421 1112 2567788888889999999998775 35555555654
Q ss_pred eceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE-ecCCCCc
Q 019091 237 NLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV-TGKLWPK 313 (346)
Q Consensus 237 ~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV-TGK~Wp~ 313 (346)
- +|+. .|.+.+.-| +.+|-++||..-.+++.++... -.+. .|--+++|.| |...--.
T Consensus 99 c---i~~~~~~~~vIsgsW-D~~ik~wD~R~~~~~~~~d~~k--------------kVy~--~~v~g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 99 C---IEYSYEVGCVISGSW-DKTIKFWDPRNKVVVGTFDQGK--------------KVYC--MDVSGNRLVVGTSDRKVL 158 (323)
T ss_pred E---EEeeccCCeEEEccc-CccEEEEeccccccccccccCc--------------eEEE--EeccCCEEEEeecCceEE
Confidence 2 4544 788999999 8999999999977777775522 1233 3445788988 5555455
Q ss_pred EEEEEEe-eccccccCCCc
Q 019091 314 LYEINLR-EMKRERKDGFN 331 (346)
Q Consensus 314 l~ev~l~-~~~~~~~~~~~ 331 (346)
+|.++.- ...+.++.+|+
T Consensus 159 iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred EEEcccccchhhhccccce
Confidence 6666542 22244455543
No 222
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.76 E-value=3.5 Score=41.38 Aligned_cols=218 Identities=13% Similarity=0.132 Sum_probs=120.8
Q ss_pred CCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEE----eccC---CCeeEEEEEEe-
Q 019091 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI----NQME---GSYFGEGLTLL- 158 (346)
Q Consensus 87 ~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~----~~l~---~~~FgeGit~~- 158 (346)
++-...=.+...-+..+..|+.|.-.+|||.-+.+.. .++.++.|++...-.-.. ..+. .-...||.++.
T Consensus 32 g~~~l~g~~~~~stt~p~nf~kgckWSPDGSciL~~s--edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvyd 109 (406)
T KOG2919|consen 32 GPINLGGNVIAFSTTKPLNFLKGCKWSPDGSCILSLS--EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYD 109 (406)
T ss_pred cceeccCceEEeccCCchhhhccceeCCCCceEEeec--ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEE
Confidence 3333334445555556788999999999997555544 567899987653211111 1111 11123344442
Q ss_pred ------------CCEEEEEEeeCCEEEEEECCCCcEEEEEec-------CCCceeEEeeCCCEEEEECCCCeEEEEeC-C
Q 019091 159 ------------GEKLFQVTWLQKTGFIYDQNNLNKLEEFTH-------QMKDGWGLATDGKVLFGSDGSSMLYQIDP-Q 218 (346)
Q Consensus 159 ------------g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-------~~peGwGLt~Dg~~LyvSdGs~~l~vIDp-~ 218 (346)
..-||.++-+++-|-++|+-|++..+.+.. .+..-.+++|||..||.-. .+.|.++|+ .
T Consensus 110 y~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~R 188 (406)
T KOG2919|consen 110 YCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSR 188 (406)
T ss_pred EEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccC
Confidence 124666777789999999999999998852 1335567899999999854 468999998 4
Q ss_pred CCcE---EEEEEeccCCeeeeecee--eEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceee
Q 019091 219 TLKV---IRKDIVRYKGREVRNLNE--LEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLN 293 (346)
Q Consensus 219 T~kv---i~~I~V~~~G~pv~~lNE--LE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlN 293 (346)
+++- -.++.-+..|.. +-+.- +.+.+-+.+|---+.+.+=+-.-..++.+..+ ..+ .+.| -
T Consensus 189 pGr~c~vy~t~~~~k~gq~-giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---------ggh---~gGv-T 254 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQK-GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---------GGH---GGGV-T 254 (406)
T ss_pred CCCCCcchhhhhccccccc-ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---------ccc---CCCe-e
Confidence 4332 222222221110 00000 11112233332222333322222333322222 001 1111 1
Q ss_pred EEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 294 GIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 294 GIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
-+.|-++|++||+.-+..++|..=.+..
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehh
Confidence 2568999999999999999998777653
No 223
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.76 E-value=2 Score=44.34 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=81.0
Q ss_pred EEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeE-----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEE
Q 019091 153 EGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (346)
Q Consensus 153 eGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG-----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I 226 (346)
.|+..+. +..++..-.++.....|..+++.+.....+ ..+.+ +.|||-.+-.---++.|-++|......+++.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 3445543 344455555677777899999998888764 23333 5567654333224789999999999988888
Q ss_pred EeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCch
Q 019091 227 IVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNL 277 (346)
Q Consensus 227 ~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l 277 (346)
+... -|+. ++.|. |||-.|.--.+++|..-|....+-..+|.+++.
T Consensus 386 pght--~~vk---~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~ 432 (506)
T KOG0289|consen 386 PGHT--GPVK---AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK 432 (506)
T ss_pred CCCC--Ccee---EEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc
Confidence 8744 2443 56666 687666555667799999999998888877553
No 224
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.73 E-value=2.4 Score=42.19 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=83.0
Q ss_pred CCEEEEEcCCCCCCeEEEEECCC--CcEEEEeccCC-CeeEEEEEEeCCEEEEEEee-----------CCEEEEEECCCC
Q 019091 115 NDTLFESTGLYGRSSVRRVALET--GKVEAINQMEG-SYFGEGLTLLGEKLFQVTWL-----------QKTGFIYDQNNL 180 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~T--gkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~-----------~~~v~V~D~~tl 180 (346)
++.||+..|. +...+.++|+++ ++-....+++. ...+.+++..+++||+.--. .+.+++||+.+.
T Consensus 38 ~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 6899998775 456788999874 33333334431 22345677789999997432 256999998765
Q ss_pred cEEEEEe-cCC-CceeE-EeeCCCEEEEECC----------------------------------------CCeEEEEeC
Q 019091 181 NKLEEFT-HQM-KDGWG-LATDGKVLFGSDG----------------------------------------SSMLYQIDP 217 (346)
Q Consensus 181 ~~i~ti~-~~~-peGwG-Lt~Dg~~LyvSdG----------------------------------------s~~l~vIDp 217 (346)
+-..--+ .+. ..|-. ++..+++||+-=| .+.+.+.||
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~ 196 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDP 196 (376)
T ss_pred EEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEEC
Confidence 4333111 111 12323 3325678888533 257999999
Q ss_pred CCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec------CCCeE--EEEeCCCCe
Q 019091 218 QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW------QTDCI--ARISHEDGV 267 (346)
Q Consensus 218 ~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~------~sn~I--~vID~~TG~ 267 (346)
++.+-...=+.... +... -.+...+++||+--- .++++ ..+|+++.+
T Consensus 197 ~t~~W~~~~~~p~~--~~~~-~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
T PRK14131 197 STNQWKNAGESPFL--GTAG-SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLK 251 (376)
T ss_pred CCCeeeECCcCCCC--CCCc-ceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcc
Confidence 99887531111110 1110 024455788886321 12333 355776665
No 225
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.52 E-value=0.59 Score=46.70 Aligned_cols=173 Identities=20% Similarity=0.246 Sum_probs=99.5
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEEC-CCCcEEEEec-cCCCeeEE-E------EEEeCCEEEEEEeeCCEEEEEEC
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVAL-ETGKVEAINQ-MEGSYFGE-G------LTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl-~Tgkv~~~~~-l~~~~Fge-G------it~~g~~LY~ltw~~~~v~V~D~ 177 (346)
..|.|++|| +||-+ -.+.|++||+ .+|+--.... +-.+.||. | +.+..-+.+..--..+.+=+|.-
T Consensus 162 hsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 162 HSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred eeEEecCCCCeEeec----ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 489999999 57754 4579999999 6776433332 12222221 1 22234446665555677777777
Q ss_pred CCCcEEEEEecCCCceeE---EeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeecee-eEee---CCEEE
Q 019091 178 NNLNKLEEFTHQMKDGWG---LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFI---KGEVW 249 (346)
Q Consensus 178 ~tl~~i~ti~~~~peGwG---Lt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE-LE~~---~G~Ly 249 (346)
...+.+...- +...|.. ..+||++||+-- -+++|..+|-..-+. +|..-++.+...|. +-++ +|++.
T Consensus 238 ~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 238 DGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEIL 312 (406)
T ss_pred CCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCcee
Confidence 7777777664 2123322 346999999955 489999999764322 22222233333343 2222 35666
Q ss_pred EEecCCCeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019091 250 ANVWQTDCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 250 aNv~~sn~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
|.--.+..|.|-|.++ |.-+... .+-.+.-||++++|-=.
T Consensus 313 asG~tdG~V~vwdlk~~gn~~sv~-------------~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGNEVSVT-------------GNYSDTVNGVSLNPIMP 353 (406)
T ss_pred eccCCCccEEEEecCCCCCccccc-------------ccccccccceecCcccc
Confidence 6655566677777776 5411111 01235678888888533
No 226
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.47 E-value=2 Score=45.47 Aligned_cols=158 Identities=16% Similarity=0.052 Sum_probs=103.0
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEE-eeCCEEEEEECCC
Q 019091 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT-WLQKTGFIYDQNN 179 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~lt-w~~~~v~V~D~~t 179 (346)
|...- -|+++...+.++++.. .+-++++||..+|+-...+..... .+..+.....+.+. -.++.|.|.|..+
T Consensus 248 H~g~V--~~l~~~~~~~~lvsgS--~D~t~rvWd~~sg~C~~~l~gh~s---tv~~~~~~~~~~~sgs~D~tVkVW~v~n 320 (537)
T KOG0274|consen 248 HFGGV--WGLAFPSGGDKLVSGS--TDKTERVWDCSTGECTHSLQGHTS---SVRCLTIDPFLLVSGSRDNTVKVWDVTN 320 (537)
T ss_pred CCCCc--eeEEEecCCCEEEEEe--cCCcEEeEecCCCcEEEEecCCCc---eEEEEEccCceEeeccCCceEEEEeccC
Confidence 44444 4888874234444433 346999999999998888774432 33444444444443 5689999999999
Q ss_pred CcEEEEEe-cCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEecCCCe
Q 019091 180 LNKLEEFT-HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQTDC 257 (346)
Q Consensus 180 l~~i~ti~-~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~~sn~ 257 (346)
++.+.++. +. ..=-.+.-++..++..--+.+|.++|+.+++.++++.=.. ..+.- + +.++ ....+--.+..
T Consensus 321 ~~~l~l~~~h~-~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~--~~V~s---l-~~~~~~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 321 GACLNLLRGHT-GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT--GRVYS---L-IVDSENRLLSGSLDTT 393 (537)
T ss_pred cceEEEecccc-ccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc--ceEEE---E-EecCcceEEeeeeccc
Confidence 99999988 42 1212356678888775556699999999999988877632 23321 2 2333 33333334677
Q ss_pred EEEEeCCCC-eEEEEE
Q 019091 258 IARISHEDG-VVLGWV 272 (346)
Q Consensus 258 I~vID~~TG-~Vv~~I 272 (346)
|-+-|..++ +.+.++
T Consensus 394 IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTL 409 (537)
T ss_pred eEeecCCchhhhhhhh
Confidence 888899988 555544
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.45 E-value=0.96 Score=48.07 Aligned_cols=171 Identities=12% Similarity=0.147 Sum_probs=106.7
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe----------ccCC-------------
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN----------QMEG------------- 148 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~----------~l~~------------- 148 (346)
.+++++.+.+.... .-+-+++||+-..++|-|. -+|.+||++.-.+.-.- .+..
T Consensus 41 rieLiQdfe~p~as--t~ik~s~DGqY~lAtG~YK-P~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~ 117 (703)
T KOG2321|consen 41 RIELIQDFEMPTAS--TRIKVSPDGQYLLATGTYK-PQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRT 117 (703)
T ss_pred HHHHHHhcCCcccc--ceeEecCCCcEEEEecccC-CceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCce
Confidence 46667777773333 6788899999888999988 49999999864322111 1110
Q ss_pred --------C-------eeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCC-EEEEECC-C
Q 019091 149 --------S-------YFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK-VLFGSDG-S 209 (346)
Q Consensus 149 --------~-------~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~-~LyvSdG-s 209 (346)
. -||.-+.++- -.||.+. -...||.++.+.++-+..|.+..++=|.+.-+.- -|++.-+ +
T Consensus 118 IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 118 IEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred eeehhhcCeeeeeecCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccC
Confidence 0 1343344331 2355443 3678999999999999999887566666665543 3555444 7
Q ss_pred CeEEEEeCCCCcEEEEEEeccC-----C-eeeeeceeeEeeCCEEEEEecC-CCeEEEEeCCCC
Q 019091 210 SMLYQIDPQTLKVIRKDIVRYK-----G-REVRNLNELEFIKGEVWANVWQ-TDCIARISHEDG 266 (346)
Q Consensus 210 ~~l~vIDp~T~kvi~~I~V~~~-----G-~pv~~lNELE~~~G~LyaNv~~-sn~I~vID~~TG 266 (346)
+.|-++||.+...++++.+... | ....-+..+.|.|.-|-+++.. +..|.+-|..+-
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 8999999999999999887653 1 1111233466666334444433 334555554443
No 228
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=94.31 E-value=8 Score=40.89 Aligned_cols=166 Identities=17% Similarity=0.248 Sum_probs=102.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe--e--------------------CCEEEEEECCCCcEE--
Q 019091 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--L--------------------QKTGFIYDQNNLNKL-- 183 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw--~--------------------~~~v~V~D~~tl~~i-- 183 (346)
-.|..+|+++++......+-+. ++.+=...+.||++.. . .-.+..|+.+.++..
T Consensus 186 ~~i~s~dl~~~~~~~~~~~~g~--~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~~y~ 263 (521)
T PF09826_consen 186 TTITSIDLDPDKASDSTSVLGS--GGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNESTTIYKFALDGGKIEYV 263 (521)
T ss_pred EEEEEEeCCCCCccceeEEEec--CCEEEEeCCcEEEEEecccccccccchhccccccccCCCceEEEEEEccCCcEEEE
Confidence 3667788877776555543221 3455667788988743 2 134667776654432
Q ss_pred EEEecC--CCceeEEeeCCCEEEE--EC----------CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE
Q 019091 184 EEFTHQ--MKDGWGLATDGKVLFG--SD----------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~Lyv--Sd----------Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly 249 (346)
++..++ .-.-+.|+.-++.|-| +. ..|.|+++| +++++++++.--..|+.+. ..-+.+.+.|
T Consensus 264 ~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~Iy---svRF~Gd~~Y 339 (521)
T PF09826_consen 264 GSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIY---SVRFMGDRAY 339 (521)
T ss_pred EEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEE---EEEEeCCeEE
Confidence 333332 1122223322333322 11 378999999 8999999997433455443 3456788999
Q ss_pred -EEecCCCeEEEEeCCC---CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019091 250 -ANVWQTDCIARISHED---GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 250 -aNv~~sn~I~vID~~T---G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
|+--+.|-+.+||..+ =+|++.+.+++...=|.. -+.+-|=||-.+.+.+
T Consensus 340 ~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP---~~e~~LlGiG~~~~~~ 393 (521)
T PF09826_consen 340 LVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHP---YDENHLLGIGKDTDED 393 (521)
T ss_pred EEEEeecCceEEEECCCCCCCceeeEEECccchhceeE---CCCCeEEEEcccCccc
Confidence 5777889999998665 789999998776532211 2456777888877665
No 229
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.22 E-value=5.5 Score=41.33 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=71.1
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEE----EE------e--cc--CC-CeeEEEEEE--eC-CE
Q 019091 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE----AI------N--QM--EG-SYFGEGLTL--LG-EK 161 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~----~~------~--~l--~~-~~FgeGit~--~g-~~ 161 (346)
+|.... -++++++|+....+.+ .++.|..|+..||+.. .+ . ++ +. .+..|-+++ .. ++
T Consensus 140 ~H~~s~--~~vals~d~~~~fsas--k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 140 KHQLSV--TSVALSPDDKRVFSAS--KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred cccCcc--eEEEeeccccceeecC--CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 465555 6999998885444445 4569999999999844 22 1 11 11 233444444 23 44
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEee--CCCEEEEECCCCeEEEEeCCC
Q 019091 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLAT--DGKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 162 LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~--Dg~~LyvSdGs~~l~vIDp~T 219 (346)
.++.-..++.+.|+|.+|++.++.++.-...=.+|+. ....||.+--+..|.+++.+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 5555677888889999999999998753223334443 345677754444455544433
No 230
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.12 E-value=1.2 Score=45.85 Aligned_cols=157 Identities=16% Similarity=0.109 Sum_probs=93.2
Q ss_pred EEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcEEEEE
Q 019091 110 LLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEEF 186 (346)
Q Consensus 110 L~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~i~ti 186 (346)
..|+||| +|..+.-..|...|..+|+.++...+-.......-...++++|+.|+-++-+++ .++++|++...+ .++
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~ri 321 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRL 321 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEe
Confidence 3567888 455555556999999999999884442222211113345678888776655544 599999887665 555
Q ss_pred ecC--CCceeEEeeCCCEEEEEC---CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE--eeCCE--EEEEecCCCe
Q 019091 187 THQ--MKDGWGLATDGKVLFGSD---GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE--FIKGE--VWANVWQTDC 257 (346)
Q Consensus 187 ~~~--~peGwGLt~Dg~~LyvSd---Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE--~~~G~--LyaNv~~sn~ 257 (346)
... ...--..+|||+++.+.. |.-.|.+.|+++..-++....+. +||.. ..||+ +|...+..+.
T Consensus 322 T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~-------~~e~ps~~~ng~~i~~~s~~~~~~ 394 (425)
T COG0823 322 TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY-------LNESPSWAPNGRMIMFSSGQGGGS 394 (425)
T ss_pred eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc-------cCCCCCcCCCCceEEEeccCCCCc
Confidence 432 111224789999876633 34457778876655433333322 22321 22443 6666666666
Q ss_pred EEEEeCCCCeEEEEEEC
Q 019091 258 IARISHEDGVVLGWVLL 274 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l 274 (346)
+..--..+|++...+.+
T Consensus 395 ~l~~~s~~g~~~~~~~~ 411 (425)
T COG0823 395 VLSLVSLDGRVSRPLPL 411 (425)
T ss_pred eEEEeeccceeEEEEec
Confidence 66666677777665533
No 231
>KOG4328 consensus WD40 protein [Function unknown]
Probab=94.03 E-value=0.92 Score=46.87 Aligned_cols=177 Identities=12% Similarity=0.106 Sum_probs=110.5
Q ss_pred CCCCeEEEEECCCCcE-EEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE-----EecCCC-ceeEE
Q 019091 125 YGRSSVRRVALETGKV-EAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE-----FTHQMK-DGWGL 196 (346)
Q Consensus 125 yg~s~V~~iDl~Tgkv-~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t-----i~~~~p-eGwGL 196 (346)
+| ...+||+.+++- ...+.+.. ..=+..+-+....++...-.++++-++|...+...++ +++... .---+
T Consensus 300 ~G--~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 300 VG--NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred cc--ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence 46 788899988764 33333322 2212223334455666667788899999988876664 333211 12237
Q ss_pred eeCCCEEEEECCCCeEEEEeC----CCCcEEEEEEecc-CCeeeeece-eeEeeCCEEEEEecCCCeEEEEeCCCCeEEE
Q 019091 197 ATDGKVLFGSDGSSMLYQIDP----QTLKVIRKDIVRY-KGREVRNLN-ELEFIKGEVWANVWQTDCIARISHEDGVVLG 270 (346)
Q Consensus 197 t~Dg~~LyvSdGs~~l~vIDp----~T~kvi~~I~V~~-~G~pv~~lN-ELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~ 270 (346)
+|+|..|..++.+++|.++|. +......+|.=.. .|+=+..+- ++.+....|++... ...|=+||...|+.+.
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~-~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY-PRPIDVFDGNGGQMVC 456 (498)
T ss_pred cCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc-CcceeEEcCCCCEEee
Confidence 899999777888999999998 5566666665432 233111111 23333445666664 6669999999999777
Q ss_pred EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019091 271 WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 271 ~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.+-.+.+. .++-=++++|-++.+.-.|-..+++|
T Consensus 457 el~~P~~~-----------tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 457 ELHDPESS-----------TIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred eccCcccc-----------ccccceeecccccceeccCCccceEE
Confidence 75332221 24555789998887777777777777
No 232
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=3 Score=43.77 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=119.8
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019091 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
.-+.++++|. |-+++. .+.|.+||..+.|-+..+.. .... .|.-..+..+...--+++.+..+|....+...+
T Consensus 221 tSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~~~h~~r--vg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 221 TSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLRGSHASR--VGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred EEEEECCCCCEEEEeec---CCeEEEEehhhccccccccCCcCce--eEEEeccCceEEEecCCCcEEEEEEecchhhhh
Confidence 4667777774 555543 45999999999887777766 3333 344555677777778889999999887766665
Q ss_pred -Ee-cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC--CCeEEE
Q 019091 186 -FT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ--TDCIAR 260 (346)
Q Consensus 186 -i~-~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~--sn~I~v 260 (346)
.. +. .--|+..++|+..|-.-.-+|.++++|..+.+.+.++.-.. -.+. ...+.+.-.-|.|.=.. +.+|-.
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~--aAVK-A~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT--AAVK-ALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc--eeee-EeeeCCCccCceEEcCCCcccEEEE
Confidence 22 11 12466677888765443338999999986655554444322 1221 11222223344444333 335777
Q ss_pred EeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019091 261 ISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 261 ID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
=|+.+|+-+..+|.. .....++|++..++|..|...-..
T Consensus 373 wn~~~g~~i~~vdtg--------------sQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 373 WNTNTGARIDSVDTG--------------SQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred EEcCCCcEecccccC--------------CceeeEEEcCCCCEEEEecCCCCC
Confidence 788899988888662 245679999999999999887765
No 233
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.96 E-value=0.84 Score=49.63 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=94.5
Q ss_pred eEEEEEEecCCCCcceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019091 93 IQVVNEFPHDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
-+=++.+.| ..|...++|.| |++.|+|..+.| +|+.|+....+|..-.++..-.=+.-..++|+...+.+. .+.
T Consensus 400 ~~CL~~F~H--ndfVTcVaFnPvDDryFiSGSLD~--KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~-~G~ 474 (712)
T KOG0283|consen 400 KECLKVFSH--NDFVTCVAFNPVDDRYFISGSLDG--KVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF-NGY 474 (712)
T ss_pred cceeeEEec--CCeeEEEEecccCCCcEeeccccc--ceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEe-ccE
Confidence 456788888 67889999997 558999988766 999999999999888888755444555556665555554 589
Q ss_pred EEEEECCCCcEEEEEecC------CC----ceeEEee-CCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019091 172 GFIYDQNNLNKLEEFTHQ------MK----DGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~------~p----eGwGLt~-Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
..+|++..++...++.+- .. -|.-..| +-+++.|+--+++|.++|..+.+++.+.+
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 999999999988877531 11 2333332 34467776668899999997766655544
No 234
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=93.87 E-value=0.69 Score=47.25 Aligned_cols=194 Identities=14% Similarity=0.134 Sum_probs=125.4
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019091 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
.||..- .++.++.+|+..+|.. +...|..|++.-..|.....-. ...-...+++ ++--|+.--.++++.+.|..
T Consensus 136 aHDs~V--r~m~ws~~g~wmiSgD--~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 136 AHDSPV--RTMKWSHNGTWMISGD--KGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred hhcccc--eeEEEccCCCEEEEcC--CCceEEecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEecc
Confidence 365333 7999998898888865 4469999998866543333221 2222222333 56678887889999999976
Q ss_pred CCcEEEEEecCCCceeEEee----CCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEe
Q 019091 179 NLNKLEEFTHQMKDGWGLAT----DGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (346)
Q Consensus 179 tl~~i~ti~~~~peGwGLt~----Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv 252 (346)
--+.-..+ .+.||-+.. ..+-|++|-| ++.|.++||++.+-+.++.+..+ -+. ++.+- +|-..++.
T Consensus 211 ~~kee~vL---~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl---~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 211 MPKEERVL---RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVL---AVKFNPNGNWLLTG 282 (464)
T ss_pred CCchhhee---ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEE---EEEEcCCCCeeEEc
Confidence 55554444 257888643 3677888765 77999999999999888877542 221 24443 44444555
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
-.+..+-+.|..+-+-+-++ + + -..-...++|.|-..-||++|...+.++-=.+
T Consensus 283 skD~~~kv~DiR~mkEl~~~-----r------~--Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMKELFTY-----R------G--HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred cCCceEEEEehhHhHHHHHh-----h------c--chhhheeeccccccccceeeccCCCceEEEec
Confidence 55556777777655422222 1 0 01234568999999999999999988875544
No 235
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=93.74 E-value=1.8 Score=44.48 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=96.2
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCC-EEEEEEeeCCEEEEEECC
Q 019091 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~-~LY~ltw~~~~v~V~D~~ 178 (346)
|+..-| +++|.+||.|..|.|+ ++.=++||+.||+-+-.+. --+..|+ ++...+ .....--.++++-|.|..
T Consensus 302 Hs~~v~--~iaf~~DGSL~~tGGl--D~~~RvWDlRtgr~im~L~gH~k~I~~--V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 302 HSKGVF--SIAFQPDGSLAATGGL--DSLGRVWDLRTGRCIMFLAGHIKEILS--VAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred cccccc--eeEecCCCceeeccCc--cchhheeecccCcEEEEecccccceee--EeECCCceEEeecCCCCcEEEeeec
Confidence 444554 8999999999999884 5688899999998544432 1234455 344433 233334568999999999
Q ss_pred CCcEEEEEecC--CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecC
Q 019091 179 NLNKLEEFTHQ--MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (346)
Q Consensus 179 tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~ 254 (346)
-.+.+-+||.- .-...-+.|+.+...+|-+ ++++-++.+.++..++++.= -.++-+. +++. ||...++.-.
T Consensus 376 ~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He~kV~s----~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 376 MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HEGKVIS----LDISPDSQAIATSSF 450 (459)
T ss_pred ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-CccceEE----EEeccCCceEEEecc
Confidence 99998888842 1133345665566566554 99999999999998766543 2334333 4443 5556666555
Q ss_pred CCeE
Q 019091 255 TDCI 258 (346)
Q Consensus 255 sn~I 258 (346)
++++
T Consensus 451 DRT~ 454 (459)
T KOG0272|consen 451 DRTI 454 (459)
T ss_pred Ccee
Confidence 5544
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.74 E-value=3.7 Score=43.39 Aligned_cols=141 Identities=11% Similarity=0.009 Sum_probs=95.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCC------eeEEEEEEe----------------CCE-EEEEEeeCCEEEEEECCCCcE
Q 019091 126 GRSSVRRVALETGKVEAINQMEGS------YFGEGLTLL----------------GEK-LFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~------~FgeGit~~----------------g~~-LY~ltw~~~~v~V~D~~tl~~ 182 (346)
++..+++||.+++++.....--.+ +-.-|+... ++. ..++--..+.++.|+...+++
T Consensus 13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i 92 (541)
T KOG4547|consen 13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI 92 (541)
T ss_pred CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence 446999999999998666522111 111123222 122 445556679999999999999
Q ss_pred EEEEecC-CCceeEEeeCC---CEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019091 183 LEEFTHQ-MKDGWGLATDG---KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 183 i~ti~~~-~peGwGLt~Dg---~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
..++..+ .+++..-.-++ ..+|-.+++-++-.|++.+.++++....... ...++--..||.+.+.- +..|
T Consensus 93 t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~----~~~sl~is~D~~~l~~a--s~~i 166 (541)
T KOG4547|consen 93 TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP----LVSSLCISPDGKILLTA--SRQI 166 (541)
T ss_pred EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC----ccceEEEcCCCCEEEec--cceE
Confidence 9999865 34444433333 4677777889999999999999988888542 12233222367666542 7889
Q ss_pred EEEeCCCCeEEEEE
Q 019091 259 ARISHEDGVVLGWV 272 (346)
Q Consensus 259 ~vID~~TG~Vv~~I 272 (346)
.++|.+|++|+.+.
T Consensus 167 k~~~~~~kevv~~f 180 (541)
T KOG4547|consen 167 KVLDIETKEVVITF 180 (541)
T ss_pred EEEEccCceEEEEe
Confidence 99999999998776
No 237
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=93.66 E-value=0.8 Score=46.41 Aligned_cols=161 Identities=10% Similarity=0.041 Sum_probs=100.4
Q ss_pred EEEecCCE-EEEEcCCCCCCeEEEEECCCC----cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC---Cc
Q 019091 110 LLYAENDT-LFESTGLYGRSSVRRVALETG----KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN---LN 181 (346)
Q Consensus 110 L~~~~d~~-LyeStGlyg~s~V~~iDl~Tg----kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t---l~ 181 (346)
..++++++ ++++++ ..+..++|.+.. |......++.++++.-+.-....+-++ -+.+.++-||.-. +.
T Consensus 68 ~~~s~~~~llAv~~~---~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~-dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATS---SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVA-DKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccCCCceEEEEEeC---CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEE-eecCCceeeeeecccccC
Confidence 34556666 455554 346556665543 455556778888764333333333333 3455555555433 22
Q ss_pred EEEEEec-CCCceeEEeeCCCEEEEECCCCeEEEEe-CCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEE
Q 019091 182 KLEEFTH-QMKDGWGLATDGKVLFGSDGSSMLYQID-PQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIA 259 (346)
Q Consensus 182 ~i~ti~~-~~peGwGLt~Dg~~LyvSdGs~~l~vID-p~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~ 259 (346)
..-..-+ .|=.-..+++|++++.++|.+..|.+.. |++| ++.+.-.|. + .+..-|+..+++....-..+++|-
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH--~--eFVS~isl~~~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGH--K--EFVSTISLTDNYLLLSGSGDKTLR 218 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-chhhhcccc--H--hheeeeeeccCceeeecCCCCcEE
Confidence 2111111 1335567899999999999999999998 5554 334444432 1 134456777888777777799999
Q ss_pred EEeCCCCeEEEEEECCchhh
Q 019091 260 RISHEDGVVLGWVLLPNLRE 279 (346)
Q Consensus 260 vID~~TG~Vv~~I~l~~l~~ 279 (346)
+=|.++|+.+.+.|++.+..
T Consensus 219 ~Wd~~sgk~L~t~dl~s~~~ 238 (390)
T KOG3914|consen 219 LWDITSGKLLDTCDLSSLVI 238 (390)
T ss_pred EEecccCCcccccchhHhhh
Confidence 99999999999998876653
No 238
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.65 E-value=0.27 Score=49.43 Aligned_cols=179 Identities=18% Similarity=0.135 Sum_probs=120.0
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
.|.++ +...+| |+ .+++|.+||..+...+..+. +.. |--+.+ ..+++.+.--.+.+|-|.|-+|++.++++-
T Consensus 202 ClQYD--D~kiVS-Gl-rDnTikiWD~n~~~c~~~L~-GHt--GSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 202 CLQYD--DEKIVS-GL-RDNTIKIWDKNSLECLKILT-GHT--GSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred EEEec--chhhhc-cc-ccCceEEeccccHHHHHhhh-cCC--CcEEeeeccceEEEecCCCceEEEEeccCCchhhHHh
Confidence 44553 334455 44 55799999998765443332 111 222333 356788887888999999999999999876
Q ss_pred cCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE--EEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCC
Q 019091 188 HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV--IRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHED 265 (346)
Q Consensus 188 ~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv--i~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~T 265 (346)
+--..-.+|-...+.++.+..+.++.|+|...-.. .+++-||- + ...|-.+|.+.+|. +--.+.+|-+-|+.|
T Consensus 275 hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--r--AaVNvVdfd~kyIV-sASgDRTikvW~~st 349 (499)
T KOG0281|consen 275 HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH--R--AAVNVVDFDDKYIV-SASGDRTIKVWSTST 349 (499)
T ss_pred hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhh--h--hheeeeccccceEE-EecCCceEEEEeccc
Confidence 53223445666677777666778888888554332 23444432 1 24566777777554 444578899999999
Q ss_pred CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019091 266 GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 266 G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
++.+.+++- ---|||--.-.++|.|.|--..+|-
T Consensus 350 ~efvRtl~g----------------HkRGIAClQYr~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 350 CEFVRTLNG----------------HKRGIACLQYRDRLVVSGSSDNTIR 383 (499)
T ss_pred eeeehhhhc----------------ccccceehhccCeEEEecCCCceEE
Confidence 999988843 1268898888999999999887753
No 239
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.56 E-value=1.2 Score=48.21 Aligned_cols=149 Identities=14% Similarity=0.127 Sum_probs=106.5
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEE-EEEeCCEEEEEEee-CCEEEEEECCCCcEEEEEe
Q 019091 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG-LTLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 110 L~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeG-it~~g~~LY~ltw~-~~~v~V~D~~tl~~i~ti~ 187 (346)
+.|.|-|.-|.|++ ++.+-+.|..+..+-++...=.-. -.+ +..+.+.-|++|.- ++.|-+.|..++..+.-|.
T Consensus 499 V~F~P~GyYFatas--~D~tArLWs~d~~~PlRifaghls--DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 499 VQFAPRGYYFATAS--HDQTARLWSTDHNKPLRIFAGHLS--DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred EEecCCceEEEecC--CCceeeeeecccCCchhhhccccc--ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence 45778888888877 667888998887654333311111 123 56677889999865 5679999999999999996
Q ss_pred cC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCC
Q 019091 188 HQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 188 ~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~ 264 (346)
-. .=.-..++|+|++|--.+.++.|.++|..+.+.+....=. -...+-|+|- +|.+.|....+|.|.+=|..
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-----t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-----TGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-----cCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 32 1256678999999888888999999999998876544332 1233446665 78888888888888888766
Q ss_pred CCe
Q 019091 265 DGV 267 (346)
Q Consensus 265 TG~ 267 (346)
.-.
T Consensus 650 ~~~ 652 (707)
T KOG0263|consen 650 KVI 652 (707)
T ss_pred hhc
Confidence 543
No 240
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=93.51 E-value=5.5 Score=43.02 Aligned_cols=219 Identities=15% Similarity=0.177 Sum_probs=119.0
Q ss_pred eeeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCC---eeEEEEEEeCCEEEEE
Q 019091 91 YTIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAIN-QMEGS---YFGEGLTLLGEKLFQV 165 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~---~FgeGit~~g~~LY~l 165 (346)
|.|+-+-.+-....-+.+--+++|||. +-.++- -+-+|.++..+..-.+..+ .++.. --..-++.++++++.+
T Consensus 369 ~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~--~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 369 YNYIHLLKLFTKEKENISCAAISPDGNLIAISTV--SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred cChhhheeeecCCccceeeeccCCCCCEEEEeec--cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 345555555544445557778889985 445655 3335555555542222222 22211 1123456678888887
Q ss_pred EeeCCEEEEEECCC--CcEEEEEecC-C---CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeece
Q 019091 166 TWLQKTGFIYDQNN--LNKLEEFTHQ-M---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239 (346)
Q Consensus 166 tw~~~~v~V~D~~t--l~~i~ti~~~-~---peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lN 239 (346)
.-....+..++..+ ++.+..+.-. . ---...++||+++-++++...|+++|.+|++..-.+ +.-+ .++.. +
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~-~rln-~~vTa-~ 523 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK-VRLN-IDVTA-A 523 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch-hccC-cceee-e
Confidence 76677777877664 4444444321 1 133457899999999999999999999997764333 1111 11110 0
Q ss_pred eeE-eeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC--CchhhhhhhccCCCCceeeEEEEeCCCC-EEEEecCCCCcEE
Q 019091 240 ELE-FIKGEVWANVWQTDCIARISHEDGVVLGWVLL--PNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTGKLWPKLY 315 (346)
Q Consensus 240 ELE-~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l--~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTGK~Wp~l~ 315 (346)
... +..++|-++- -.|.|...|.+..++..|--. .++.. ..+ ....--+||-+||+.. +++|=+..|-.+.
T Consensus 524 ~~~~~~~~~lvvat-s~nQv~efdi~~~~l~~ws~~nt~nlpk-~~~---~l~~~~~gisfd~~n~s~~~~~~a~w~~~i 598 (691)
T KOG2048|consen 524 AFSPFVRNRLVVAT-SNNQVFEFDIEARNLTRWSKNNTRNLPK-EPK---TLIPGIPGISFDPKNSSRFIVYDAHWSCLI 598 (691)
T ss_pred eccccccCcEEEEe-cCCeEEEEecchhhhhhhhhcccccccc-Chh---hcCCCCceEEeCCCCccEEEEEcCcEEEEE
Confidence 011 2233444433 244555555544443322211 01110 011 1123457999998765 7888888887776
Q ss_pred EEEE
Q 019091 316 EINL 319 (346)
Q Consensus 316 ev~l 319 (346)
+-.+
T Consensus 599 d~~~ 602 (691)
T KOG2048|consen 599 DFSL 602 (691)
T ss_pred ecCC
Confidence 6544
No 241
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=93.44 E-value=3 Score=41.78 Aligned_cols=190 Identities=12% Similarity=0.122 Sum_probs=109.8
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEEEEEC---C--
Q 019091 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQ---N-- 178 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~V~D~---~-- 178 (346)
.-++-+-+.+++..+-|+. .+..|-.||++ |+++..+.... ...-..+++.|..|-++ -..-.|.|+.+ +
T Consensus 188 v~~i~iGiA~~~k~imsas--~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~-gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 188 VDIINIGIAGNAKYIMSAS--LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVS-GFTPDVKVWEPIFTKDG 263 (420)
T ss_pred cceEEEeecCCceEEEEec--CCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEe-cCCCCceEEEEEeccCc
Confidence 3345555555556667766 45699999999 99999986532 22233456665555444 44455666553 2
Q ss_pred CCcEEEE-Eec-C--CCce-eEEeeCCCEEEEECCCCeEEEEeCCC-------CcEEEE--EEecc-CCeeeeeceeeEe
Q 019091 179 NLNKLEE-FTH-Q--MKDG-WGLATDGKVLFGSDGSSMLYQIDPQT-------LKVIRK--DIVRY-KGREVRNLNELEF 243 (346)
Q Consensus 179 tl~~i~t-i~~-~--~peG-wGLt~Dg~~LyvSdGs~~l~vIDp~T-------~kvi~~--I~V~~-~G~pv~~lNELE~ 243 (346)
+++.+.+ |.. + +.-- .+++++..++.....+.+..++|+.- -+++++ ++... .+.|+. ||.
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~R----L~l 339 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVR----LEL 339 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceE----EEe
Confidence 3333332 332 1 1122 23677777777654455555555421 111111 22222 345664 554
Q ss_pred e-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019091 244 I-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 244 ~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
- +|.++|... ..++-+...++|++..+. .... +...-.|+|+++|+.+--.|...-.++
T Consensus 340 sP~g~~lA~s~-gs~l~~~~se~g~~~~~~-----e~~h-------~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 340 SPSGDSLAVSF-GSDLKVFASEDGKDYPEL-----EDIH-------STTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred CCCCcEEEeec-CCceEEEEcccCccchhH-----HHhh-------cCceeeEEecCCCcEEeeecceeeeee
Confidence 3 788887765 667889999999875443 2111 224566999999998888887765544
No 242
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=93.43 E-value=5.1 Score=42.22 Aligned_cols=129 Identities=17% Similarity=0.214 Sum_probs=81.8
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
|...-| ||+..|+..+|.++|. +..|+.|+ ..|++-...+...--..++.+.| ...+---++.-+|+|.++
T Consensus 367 h~delw--gla~hps~~q~~T~gq--dk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~- 437 (626)
T KOG2106|consen 367 HGDELW--GLATHPSKNQLLTCGQ--DKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET- 437 (626)
T ss_pred ccccee--eEEcCCChhheeeccC--cceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-
Confidence 334665 9999998889999995 44999999 66676666665443233444445 444445578899999988
Q ss_pred cEEEEEecCCCc---eeEEeeCCCEEEEECCCC--eEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019091 181 NKLEEFTHQMKD---GWGLATDGKVLFGSDGSS--MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 181 ~~i~ti~~~~pe---GwGLt~Dg~~LyvSdGs~--~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
+.+-++... .| -+..+|||..|-|.--++ .||.+|..-++..+-=.. .|.|+. .|++.
T Consensus 438 ~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~it---hLDwS 500 (626)
T KOG2106|consen 438 QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPIT---HLDWS 500 (626)
T ss_pred ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCceeE---Eeeec
Confidence 555555543 23 344689999998865444 666777665554321111 345655 35554
No 243
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.42 E-value=6.9 Score=42.82 Aligned_cols=196 Identities=12% Similarity=0.094 Sum_probs=118.4
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 019091 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 110 L~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~ 189 (346)
|..+.+ .++.|+.+ +-+|+.|++...+=+....-..=.=...+.+.+++.|+.-=.++++-+.+..+.+++.-.+..
T Consensus 375 lSWSKn-~fLLSSSM--DKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~ 451 (712)
T KOG0283|consen 375 LSWSKN-NFLLSSSM--DKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR 451 (712)
T ss_pred cccccC-CeeEeccc--cccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh
Confidence 344443 34556674 459999999977644443222100012222334555555555666666666665555544442
Q ss_pred -CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC-Ce--eeeeceeeEeeC---CEEEEEecCCCeEEEEe
Q 019091 190 -MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK-GR--EVRNLNELEFIK---GEVWANVWQTDCIARIS 262 (346)
Q Consensus 190 -~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~-G~--pv~~lNELE~~~---G~LyaNv~~sn~I~vID 262 (346)
+--..-++|||+..+|--=.+..+++|+...+......|... ++ .-..+--|++.- .+|.|+- .+..|-++|
T Consensus 452 ~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d 530 (712)
T KOG0283|consen 452 DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYD 530 (712)
T ss_pred hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEe
Confidence 223345678898887744456788888888888887777543 11 111233466663 3788876 477899999
Q ss_pred CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 263 ~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
..+-+++..+. + .....-..-..|+.||+.+..+. ....+|-=++.+
T Consensus 531 ~~~~~lv~KfK-----G------~~n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 531 GRDKDLVHKFK-----G------FRNTSSQISASFSSDGKHIVSAS-EDSWVYIWKNDS 577 (712)
T ss_pred ccchhhhhhhc-----c------cccCCcceeeeEccCCCEEEEee-cCceEEEEeCCC
Confidence 98888877663 1 11122334567899999888777 667777766643
No 244
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=93.30 E-value=0.23 Score=40.47 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=31.9
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019091 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
+..+.+-||+|+++.--++ +| ..|||||+++|++.++|+=-.=.+|.+
T Consensus 36 ~GRll~ydp~t~~~~vl~~--~L------------~fpNGVals~d~~~vlv~Et~~~Ri~r 83 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD--GL------------YFPNGVALSPDESFVLVAETGRYRILR 83 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE--EE------------SSEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred CcCEEEEECCCCeEEEehh--CC------------CccCeEEEcCCCCEEEEEeccCceEEE
Confidence 3456789999999744442 33 278999999999999987433333333
No 245
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=0.21 Score=55.89 Aligned_cols=173 Identities=12% Similarity=0.084 Sum_probs=105.6
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--C---CEEEEE
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--G---EKLFQV 165 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g---~~LY~l 165 (346)
...++.++..-..+- .||.|.+... |+.|.+ +++.|-+||+..-+.- ...+...+.+-|... | .+++.+
T Consensus 105 ~~~~la~~~~h~G~V-~gLDfN~~q~nlLASGa--~~geI~iWDlnn~~tP--~~~~~~~~~~eI~~lsWNrkvqhILAS 179 (1049)
T KOG0307|consen 105 SEEVLATKSKHTGPV-LGLDFNPFQGNLLASGA--DDGEILIWDLNKPETP--FTPGSQAPPSEIKCLSWNRKVSHILAS 179 (1049)
T ss_pred chHHHhhhcccCCce-eeeeccccCCceeeccC--CCCcEEEeccCCcCCC--CCCCCCCCcccceEeccchhhhHHhhc
Confidence 355666664223343 7999987765 777766 7789999999874321 111222233333332 2 457777
Q ss_pred EeeCCEEEEEECCCCcEEEEEecCCC-c---eeEEeeCC-CEEEEECC---CCeEEEEeCCCCcE-EEEEEeccCCeeee
Q 019091 166 TWLQKTGFIYDQNNLNKLEEFTHQMK-D---GWGLATDG-KVLFGSDG---SSMLYQIDPQTLKV-IRKDIVRYKGREVR 236 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~~~~p-e---GwGLt~Dg-~~LyvSdG---s~~l~vIDp~T~kv-i~~I~V~~~G~pv~ 236 (346)
.--++++.|.|.+.-+.+-.+....+ - +..-.||. ..|+++.+ .-.|..+|.+.-.. .+..+....|.
T Consensus 180 ~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gi--- 256 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGI--- 256 (1049)
T ss_pred cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccce---
Confidence 77788999999887777777765312 1 22234554 45666543 44566667332111 11122222221
Q ss_pred eceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 237 NLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 237 ~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
+ -|+|- |.++.+++..++.|..=+++||+|++.+..
T Consensus 257 -l-slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 257 -L-SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred -e-eeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 1 24444 568889999999999999999999999966
No 246
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.08 E-value=2.3 Score=43.40 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=51.5
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecC---------CCceeEEeeCCCE-EEEEC--CCCeEEEEeCCCCcEEEEEEe
Q 019091 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---------MKDGWGLATDGKV-LFGSD--GSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---------~peGwGLt~Dg~~-LyvSd--Gs~~l~vIDp~T~kvi~~I~V 228 (346)
+.+.+.|+ .-.|+.|+..+.++.-. ..- +++.||++ ||.|| |..+++.+|.+|++++ ++
T Consensus 5 ~~~~~~~~----~~~D~~TG~~VtrLT~~~~~~h~~YF~~~--~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~---QL 75 (386)
T PF14583_consen 5 TTIPLEFK----TWIDPDTGHRVTRLTPPDGHSHRLYFYQN--CFTDDGRKLLFASDFDGNRNLYLLDLATGEIT---QL 75 (386)
T ss_dssp -EEE--EE----EEE-TTT--EEEE-S-TTS-EE---TTS----B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE---E-
T ss_pred cEecccee----EEeCCCCCceEEEecCCCCcccceeecCC--CcCCCCCEEEEEeccCCCcceEEEEcccCEEE---EC
Confidence 34444444 67899999999988632 112 34788966 56677 6789999999999875 33
Q ss_pred ccC-Ceeeeecee-eEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 229 RYK-GREVRNLNE-LEFIKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 229 ~~~-G~pv~~lNE-LE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
++. |.. ...+ +...+..+|- ++....|..+|.+|++....+.+
T Consensus 76 Tdg~g~~--~~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 76 TDGPGDN--TFGGFLSPDDRALYY-VKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --SS-B---TTT-EE-TTSSEEEE-EETTTEEEEEETTT--EEEEEE-
T ss_pred ccCCCCC--ccceEEecCCCeEEE-EECCCeEEEEECCcCcEEEEEEC
Confidence 321 111 0112 2233445532 44567899999999998776655
No 247
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=92.95 E-value=2.4 Score=41.65 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=79.8
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECC--CCcEEEEec--cCCCeeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEE
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALE--TGKVEAINQ--MEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~--l~~~~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.+.+++|+++..+-| +..+|-.|.++ +.++++... ....-|-. +. .++..|.+..+++.+.|||...+...
T Consensus 163 s~~~snd~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~--S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYN--SFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeEEcCCCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceee--eeccCcceEEEEecCCcEEEEEecccccc
Confidence 567888889999988 55566666554 445555232 22333332 23 24779999999999999998766544
Q ss_pred EEEec-CCCceeE------EeeCC--CEEEEECCCCeEEEEeCCCCcEEEEEEeccC
Q 019091 184 EEFTH-QMKDGWG------LATDG--KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 184 ~ti~~-~~peGwG------Lt~Dg--~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
-.+.. ..|..=| +++-| +.|+.|++-+.++++|..+++-...|.+-++
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 33322 1222212 44433 6899999999999999999998888877653
No 248
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.94 E-value=0.25 Score=53.38 Aligned_cols=169 Identities=14% Similarity=0.123 Sum_probs=101.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec--------cCCCeeEEEEEEeCCEEEEEEee-CCEEEEEECC
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ--------MEGSYFGEGLTLLGEKLFQVTWL-QKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~--------l~~~~FgeGit~~g~~LY~ltw~-~~~v~V~D~~ 178 (346)
..|.|+.+..|+.... .+..|.+||+..+|+++.+. +.=+|||+ |.+.|- +...-+.|.+
T Consensus 74 eSl~f~~~E~Llaags--asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~---------~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGS--ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE---------FFASGSTDTDLKIWDIR 142 (825)
T ss_pred eeeecCcchhhhcccc--cCCceeeeehhhhhhhhhhhccccCcceeeeccceE---------Eeccccccccceehhhh
Confidence 6778877666665533 34499999999999777552 12234443 223333 2233444544
Q ss_pred CCcEEEEEecCCCc---eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEecC
Q 019091 179 NLNKLEEFTHQMKD---GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQ 254 (346)
Q Consensus 179 tl~~i~ti~~~~pe---GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~~ 254 (346)
.--...++.-. +. -..|+|||+|+-.-..++.+-++|..-+++.....-... ..+-+|+..- .|.+..-.
T Consensus 143 k~Gc~~~~~s~-~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-----~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 143 KKGCSHTYKSH-TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-----KVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred ccCceeeecCC-cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-----cccccccCchhhhhccCCC
Confidence 33344444421 22 223689999554433368999999988888766654321 1122555543 45566666
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019091 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
+.+|-.-|.+|-+++...+. . -+-.-+.+|++++..++-
T Consensus 217 d~tv~f~dletfe~I~s~~~-~------------~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKP-E------------TDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred CceeeeeccceeEEeeccCC-c------------cCCceeeeecCCceeeec
Confidence 77788889998888877744 1 123467889998876554
No 249
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=11 Score=37.65 Aligned_cols=192 Identities=7% Similarity=-0.004 Sum_probs=116.6
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCC---CcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019091 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET---GKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~T---gkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
+.+..++.| -++.|..+++ +-+|++.= +.-+.++|..+ -.+..+..++..- .+-+++.|++-|++-|.++
T Consensus 120 ~~~~~lnt~--gyaygv~vsG-n~aYVadl---ddgfLivdvsdpssP~lagrya~~~~d-~~~v~ISGn~AYvA~~d~G 192 (370)
T COG5276 120 TLIGFLNTD--GYAYGVYVSG-NYAYVADL---DDGFLIVDVSDPSSPQLAGRYALPGGD-THDVAISGNYAYVAWRDGG 192 (370)
T ss_pred ceeccccCC--ceEEEEEecC-CEEEEeec---cCcEEEEECCCCCCceeeeeeccCCCC-ceeEEEecCeEEEEEeCCC
Confidence 445555554 3446888863 57888853 23455666554 4567777665421 2678999999999866655
Q ss_pred EEEEEE---CCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCE
Q 019091 171 TGFIYD---QNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE 247 (346)
Q Consensus 171 ~v~V~D---~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~ 247 (346)
+.++| +..=+.+++...+ |.-++++.-+++.|+.+.+.-|.++|..+.+-....-..+--.|...- ....-+.+
T Consensus 193 -L~ivDVSnp~sPvli~~~n~g-~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s-~v~Vs~~~ 269 (370)
T COG5276 193 -LTIVDVSNPHSPVLIGSYNTG-PGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSIS-TVPVSGEY 269 (370)
T ss_pred -eEEEEccCCCCCeEEEEEecC-CceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCccccc-ceecccce
Confidence 45556 4566788888886 666778888999999999999999998876643333332211232210 11223557
Q ss_pred EEEEecCCCeEEEEe---CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC
Q 019091 248 VWANVWQTDCIARIS---HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW 311 (346)
Q Consensus 248 LyaNv~~sn~I~vID---~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W 311 (346)
.|+... ..-+..|| |.+-.+...+++++-. --||+.. ++.+|++-|+.
T Consensus 270 ~Yvadg-a~gl~~idisnp~spfl~ss~~t~g~~-------------a~gi~ay--~~y~yiadkn~ 320 (370)
T COG5276 270 AYVADG-AKGLPIIDISNPPSPFLSSSLDTAGYQ-------------AAGIRAY--GNYNYIADKNT 320 (370)
T ss_pred eeeecc-ccCceeEeccCCCCCchhccccCCCcc-------------ccceEEe--cCeeEeccCCc
Confidence 887653 22233343 3334455555553211 1356554 57888998883
No 250
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.82 E-value=3.4 Score=45.26 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=78.2
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
.++...-|.|+..|..+.|.| -+..|.+||+-...-..++.=.+..--+..-..++.+.+++-+++.+-+.|.+|...
T Consensus 106 HK~AVt~l~fd~~G~rlaSGs--kDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC 183 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGS--KDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC 183 (888)
T ss_pred cccceEEEEEcccCceEeecC--CCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee
Confidence 456667889999999999988 456999999876544433321111101111122588999999999999999999999
Q ss_pred EEEEecCCCceeEEeeCCCEEEEECCCC--eEEEE
Q 019091 183 LEEFTHQMKDGWGLATDGKVLFGSDGSS--MLYQI 215 (346)
Q Consensus 183 i~ti~~~~peGwGLt~Dg~~LyvSdGs~--~l~vI 215 (346)
..+.=-...|=|+|+-+++.+.++-+++ .++-+
T Consensus 184 f~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 184 FETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred eeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 8887543479999999998887754444 55555
No 251
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.72 E-value=9.9 Score=36.64 Aligned_cols=180 Identities=15% Similarity=0.147 Sum_probs=98.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEe---C-----CE-EEEEEee--------C-CEEEEEECCC-------Cc
Q 019091 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLL---G-----EK-LFQVTWL--------Q-KTGFIYDQNN-------LN 181 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~---g-----~~-LY~ltw~--------~-~~v~V~D~~t-------l~ 181 (346)
+|.|+.+|..+.+++..+.+++.--+..+... + .. +.+.|-. . +++++|+..+ ++
T Consensus 1 ~s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 1 ASSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp --EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred CcEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 36899999999999999988776555544442 1 23 3344543 2 7889998877 35
Q ss_pred EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCc-EEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCC-eEE
Q 019091 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLK-VIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTD-CIA 259 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~k-vi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn-~I~ 259 (346)
.+.+.++. ..-.++++-+++|.++-| ++|++.+....+ +...-.... ++ ....+...+++|++..-... .+.
T Consensus 81 ~i~~~~~~-g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~---~~-~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 81 LIHSTEVK-GPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDS---PF-YITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEES-S-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-B---SS-SEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEEeec-CcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecc---eE-EEEEEeccccEEEEEEcccCEEEE
Confidence 55555654 345678877778888765 566676655555 443333322 22 33346666777777654322 344
Q ss_pred EEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecccc
Q 019091 260 RISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 260 vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~ 325 (346)
..|.+..+.. .+.- + .....+. .+++-.+++ .++.+-.-.+++-.+..|....
T Consensus 155 ~~~~~~~~l~-~va~-d---------~~~~~v~-~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~ 207 (321)
T PF03178_consen 155 RYDEENNKLI-LVAR-D---------YQPRWVT-AAEFLVDED-TIIVGDKDGNLFVLRYNPEIPN 207 (321)
T ss_dssp EEETTTE-EE-EEEE-E---------SS-BEEE-EEEEE-SSS-EEEEEETTSEEEEEEE-SS-SS
T ss_pred EEEccCCEEE-EEEe-c---------CCCccEE-EEEEecCCc-EEEEEcCCCeEEEEEECCCCcc
Confidence 4565333221 1210 0 0111233 344443445 5555566688888888654333
No 252
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.65 E-value=10 Score=36.77 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=74.0
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
.-.-|..||.-.+++| .+-.|+.|++..|..++.+.= +.+..-..++.+ +.=+.+--.+..+.++|.+|++++.+|
T Consensus 21 ~avryN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred EEEEEccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeecccccc-ccccccCCCCceEEEEEcccCeeeeec
Confidence 4556667788888889 677999999999999988853 322222222223 334455566788999999999999999
Q ss_pred ecCCCceeEEeeCCC-EEEEECC-CCeEEEEeCCCC
Q 019091 187 THQMKDGWGLATDGK-VLFGSDG-SSMLYQIDPQTL 220 (346)
Q Consensus 187 ~~~~peGwGLt~Dg~-~LyvSdG-s~~l~vIDp~T~ 220 (346)
..-..+==++..+.+ .+.+|-+ +.++..+|-...
T Consensus 98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred ccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence 742223234555544 3444544 789999996553
No 253
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.64 E-value=1.4 Score=47.30 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=90.8
Q ss_pred CCcceeEEE-ecCCEEEEEcCCCCCCeEEEEECCCC--cEEEEe------ccC--C--CeeEEEEEE-eCCEEEEEEeeC
Q 019091 104 RAFTQGLLY-AENDTLFESTGLYGRSSVRRVALETG--KVEAIN------QME--G--SYFGEGLTL-LGEKLFQVTWLQ 169 (346)
Q Consensus 104 ~~FTqGL~~-~~d~~LyeStGlyg~s~V~~iDl~Tg--kv~~~~------~l~--~--~~FgeGit~-~g~~LY~ltw~~ 169 (346)
+.|.+.|++ .++..|+.|.|+.+ .|.+||..+| +++.+. .++ + ..+. ++. ..+.+++.--.+
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~--~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS--LA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDR--KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS--LAMNQTGTIIVSGGTE 192 (735)
T ss_pred cchheeeeecccCceeEEecCCCc--cEEEEEccCcchhhhhhccccccccCCCCCccceee--eecCCcceEEEecCcc
Confidence 567789999 67788999999755 9999999988 233222 122 1 1111 121 124688887889
Q ss_pred CEEEEEECCCCcEEEEEecCCCcee---EEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC
Q 019091 170 KTGFIYDQNNLNKLEEFTHQMKDGW---GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~~peGw---GLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
+.+-++|+.|.+.+-.+. +..+-. -+..||.++..+-.+.+|-++|..-.+-+.++.|..+|
T Consensus 193 k~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred cceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 999999999999988886 322322 35778888888777889999999999999999998765
No 254
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.61 E-value=12 Score=37.29 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=79.0
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCC-CcEEEEe--ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEE
Q 019091 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET-GKVEAIN--QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~T-gkv~~~~--~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D 176 (346)
|-.|..=..-|+|+|....+.++|-+ +++||.|+... |....+. .+++..+-.--.-+|.++|...- ++.+-++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~-Dk~~k~wD 100 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSW-DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC-DKQAKLWD 100 (347)
T ss_pred CCCcccchheeEeccccCceEEeccc-CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc-CCceEEEE
Confidence 33344445789999844433444433 46999999876 5554433 45555555444446778887653 57888999
Q ss_pred CCCCcEEEEEecCCCceeE----EeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEecc
Q 019091 177 QNNLNKLEEFTHQMKDGWG----LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 177 ~~tl~~i~ti~~~~peGwG----Lt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~ 230 (346)
..+.++..--.+. .+.. +..-...+.|+-. +.+|-++|++.-+.+.++...+
T Consensus 101 L~S~Q~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 101 LASGQVSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE 157 (347)
T ss_pred ccCCCeeeeeecc--cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc
Confidence 9998543322332 1112 1112234555544 7899999999999999988865
No 255
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=92.58 E-value=0.72 Score=46.43 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=92.3
Q ss_pred EEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC-----cEEEEEecCC--Cc
Q 019091 120 ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL-----NKLEEFTHQM--KD 192 (346)
Q Consensus 120 eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl-----~~i~ti~~~~--pe 192 (346)
.+.| .+.+|-.+|.+||- -.........|+.-++..++ |...--+++.|++||...+ .....+-++. .-
T Consensus 228 fs~G--~sqqv~L~nvetg~-~qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVG--LSQQVLLTNVETGH-QQSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred eccc--ccceeEEEEeeccc-ccccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 4667 67799999999983 23333444556544443334 4555678899999998776 2222333321 00
Q ss_pred eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-------CCEEEEEecCCCeEEEE-eCC
Q 019091 193 GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-------KGEVWANVWQTDCIARI-SHE 264 (346)
Q Consensus 193 GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-------~G~LyaNv~~sn~I~vI-D~~ 264 (346)
=--|-.+++.|.+||=+++|...|..--|-.+.|.-.+ | +.|+.++. +|.|++ ..+|+..+| ..+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-G----HvN~~a~l~~~v~~eeg~I~s--~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-G----HVNLSAYLPAHVKEEEGSIFS--VGDDCYTRIWSLD 376 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeee-c----ccccccccccccccccceEEE--ccCeeEEEEEecc
Confidence 00123468899999989999999976544433343332 2 44555543 456666 468887777 678
Q ss_pred CCeEEEEEECCchh
Q 019091 265 DGVVLGWVLLPNLR 278 (346)
Q Consensus 265 TG~Vv~~I~l~~l~ 278 (346)
+|..+.+|+++.-+
T Consensus 377 ~ghLl~tipf~~s~ 390 (425)
T KOG2695|consen 377 SGHLLCTIPFPYSA 390 (425)
T ss_pred cCceeeccCCCCcc
Confidence 89999999885543
No 256
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=92.36 E-value=1.6 Score=43.59 Aligned_cols=186 Identities=13% Similarity=0.136 Sum_probs=114.6
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe----CCEEEEEEeeCCEEEEEECCCCcE
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL----GEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~----g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
..|.|.|.| .|.++| +...++.||..|-+--..-. |....-++++-. .+.||+..-+++.+-++|--+.+-
T Consensus 220 rsiSfHPsGefllvgT---dHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGT---DHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred eeEeecCCCceEEEec---CCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence 578888888 466665 46799999999876433332 333334566664 478999999999999999999999
Q ss_pred EEEEecCCCceeE-----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe-ccCCeeeeeceeeEeeCCEEEEEecCCC
Q 019091 183 LEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV-RYKGREVRNLNELEFIKGEVWANVWQTD 256 (346)
Q Consensus 183 i~ti~~~~peGwG-----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V-~~~G~pv~~lNELE~~~G~LyaNv~~sn 256 (346)
+.+|... -.|-. ++.||+.+..|--++.+..+...|++.+.+-.= |.-|+...+.+. +| |-..+
T Consensus 296 v~t~~~A-H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA-------vF--NhtEd 365 (430)
T KOG0640|consen 296 VRTIGNA-HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA-------VF--NHTED 365 (430)
T ss_pred HHHHHhh-cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh-------hh--cCccc
Confidence 9999753 23334 455788666554488888888888887644322 222333222211 11 22356
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
.|..+|-+++.+..|=.-...+..+..-+ -+..+--|..+|.+. .|+|+..
T Consensus 366 yVl~pDEas~slcsWdaRtadr~~l~slg--Hn~a~R~i~HSP~~p-~FmTcsd 416 (430)
T KOG0640|consen 366 YVLFPDEASNSLCSWDARTADRVALLSLG--HNGAVRWIVHSPVEP-AFMTCSD 416 (430)
T ss_pred eEEccccccCceeeccccchhhhhhcccC--CCCCceEEEeCCCCC-ceeeecc
Confidence 67788888888766653222221111111 122344577777644 5667654
No 257
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.34 E-value=6.1 Score=40.29 Aligned_cols=144 Identities=23% Similarity=0.276 Sum_probs=74.1
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecCC------CceeEEeeCCCE---EEEECCC---Ce--EEEEeCCCCcEEEEE
Q 019091 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQM------KDGWGLATDGKV---LFGSDGS---SM--LYQIDPQTLKVIRKD 226 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~------peGwGLt~Dg~~---LyvSdGs---~~--l~vIDp~T~kvi~~I 226 (346)
-+.+.|-+++=++|||. +++++..++.+. .+|+.| +|+. +.+||.+ ++ ++.||+.+..+.
T Consensus 69 SlIigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~--- 142 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT--- 142 (381)
T ss_dssp -EEEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE---
T ss_pred ceEEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce---
Confidence 36666777777888885 466667666542 243333 4554 4668864 44 788899887643
Q ss_pred EeccCCeeee-ecee---eE-ee---CCEEEEEecC-CCe--EE-EEeCCCCeEEEEEECCchhhhhhhccCCCCceeeE
Q 019091 227 IVRYKGREVR-NLNE---LE-FI---KGEVWANVWQ-TDC--IA-RISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNG 294 (346)
Q Consensus 227 ~V~~~G~pv~-~lNE---LE-~~---~G~LyaNv~~-sn~--I~-vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNG 294 (346)
.+++.+.|+. .++| +. |. +|.+||-+-. +.. -. ..+..+|++.+++ ++.. ....-+.|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l----VR~f------~~~sQ~EG 212 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL----VREF------KVGSQPEG 212 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE----EEEE------E-SS-EEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE----EEEe------cCCCcceE
Confidence 2333223321 2222 22 21 4655543322 222 22 3355666654443 1111 11236899
Q ss_pred EEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 295 IAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 295 IA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
++.|.+..+|||.-++ --|++....|
T Consensus 213 CVVDDe~g~LYvgEE~-~GIW~y~Aep 238 (381)
T PF02333_consen 213 CVVDDETGRLYVGEED-VGIWRYDAEP 238 (381)
T ss_dssp EEEETTTTEEEEEETT-TEEEEEESSC
T ss_pred EEEecccCCEEEecCc-cEEEEEecCC
Confidence 9999999999997665 5677776654
No 258
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.33 E-value=6.8 Score=37.76 Aligned_cols=118 Identities=10% Similarity=0.161 Sum_probs=80.8
Q ss_pred eeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCCCeeEEEEEEeCCEEEEEEeeC
Q 019091 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~~~FgeGit~~g~~LY~ltw~~ 169 (346)
..++.+.+.+++... ..|..- +|+|.++.| +.|.++++...+ +...-.++...+...+...++.+++.+-..
T Consensus 77 ~~l~~i~~~~~~g~V--~ai~~~-~~~lv~~~g----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPV--TAICSF-NGRLVVAVG----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp -EEEEEEEEEESS-E--EEEEEE-TTEEEEEET----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS
T ss_pred eEEEEEEEEeecCcc--eEhhhh-CCEEEEeec----CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEccc
Confidence 467888888884443 567666 578888887 599999999988 888877877778899999999999999776
Q ss_pred CE-EEEEECC--CCcEEEEEecCCCceeE--EeeCCCEEEEECCCCeEEEEe
Q 019091 170 KT-GFIYDQN--NLNKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQID 216 (346)
Q Consensus 170 ~~-v~V~D~~--tl~~i~ti~~~~peGwG--Lt~Dg~~LyvSdGs~~l~vID 216 (346)
+. ++.||.+ ++.++++=..+ ..... +-.|++.++++|....|+++.
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~-~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQP-RWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS--BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred CEEEEEEEccCCEEEEEEecCCC-ccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 65 4457863 35555542221 11222 223667888899888777665
No 259
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=92.33 E-value=13 Score=37.25 Aligned_cols=207 Identities=9% Similarity=0.060 Sum_probs=122.5
Q ss_pred EEEEEecCCCCcceeEEEecCCEEE-EEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEE
Q 019091 95 VVNEFPHDPRAFTQGLLYAENDTLF-ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTG 172 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~Ly-eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v 172 (346)
...++.+.. +..+.|++.|.++ +++. +.+|.+||+.|..+-+.+.-.-+|. .-+... .++..+..-.++.+
T Consensus 17 l~~tld~~~---a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi-~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 17 LTHTLDNPL---AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPI-TSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred hceeccCCc---cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccce-eEEEecCCCCEeeeecCCcee
Confidence 344555532 4789999888543 4432 3599999999987543332211221 123332 35566666778999
Q ss_pred EEEECCCCcEEEEEecCCC-ceeEEeeCCCEEE-EE--CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE----ee
Q 019091 173 FIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLF-GS--DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE----FI 244 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~p-eGwGLt~Dg~~Ly-vS--dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE----~~ 244 (346)
..+|...+..+++|...+| -|.-+.|-.+... ++ +.+..+..+++.+.++ ++..++| .+|+-. ++
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~---Lp~d~d~----dln~sas~~~fd 162 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV---LPKDDDG----DLNSSASHGVFD 162 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee---ccCCCcc----cccccccccccc
Confidence 9999999999999987643 3333455444333 33 3465665555533333 3444432 233322 22
Q ss_pred --CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019091 245 --KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 245 --~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
+.+||+-+- ...+.++|.+|.+++++....... ..--|-+. ..+++|+++-..--|...++..+
T Consensus 163 r~g~yIitGts-KGkllv~~a~t~e~vas~rits~~------------~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 163 RRGKYIITGTS-KGKLLVYDAETLECVASFRITSVQ------------AIKQIIVS-RKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred CCCCEEEEecC-cceEEEEecchheeeeeeeechhe------------eeeEEEEe-ccCcEEEEecCCceEEEEehhhh
Confidence 347998764 788999999999999988652211 12235564 44567777777776666666555
Q ss_pred cccccCC
Q 019091 323 KRERKDG 329 (346)
Q Consensus 323 ~~~~~~~ 329 (346)
...-.+|
T Consensus 229 ~~~~r~~ 235 (405)
T KOG1273|consen 229 DDEGRDG 235 (405)
T ss_pred cccCccC
Confidence 4443333
No 260
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.09 E-value=6.3 Score=38.72 Aligned_cols=130 Identities=10% Similarity=-0.025 Sum_probs=85.0
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeec
Q 019091 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~l 238 (346)
+++.+.---++++..+|+++++.+-+--.+ .-|+-++- -|+.+.+---+..|||+|.+|+...-....-+. +.--
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~---vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET---VKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh---hccc
Confidence 344444455789999999999998876654 23555533 355555544588999999999866544444221 1100
Q ss_pred eeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 239 NELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 239 NELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
-.+++..|-||.... +....++|+++...+-.... . +.+..+-+++|....||+|
T Consensus 99 a~~d~~~glIycgsh-d~~~yalD~~~~~cVykskc---g----------G~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSH-DGNFYALDPKTYGCVYKSKC---G----------GGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred eEEcCCCceEEEecC-CCcEEEecccccceEEeccc---C----------CceeccceecCCCceEEEE
Confidence 126677889999874 67789999999998877533 2 2244455666655556654
No 261
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=92.06 E-value=1.5 Score=48.62 Aligned_cols=158 Identities=11% Similarity=0.111 Sum_probs=99.0
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEE--EECCCCcE
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFI--YDQNNLNK 182 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V--~D~~tl~~ 182 (346)
+||+++--+ .+|.+....++=.|-.+|-.-.|++-...|- +|-+.-+.+.++.||-.+|... +|-- .|-+..++
T Consensus 1071 EGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLV-NPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRi 1149 (1289)
T KOG1214|consen 1071 EGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLV-NPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRI 1149 (1289)
T ss_pred cceeeeeccceeeeeccccchhheeecCCceeeEEEeeccc-CcceEEeecccCceeeccccccCCcceeeccCCccceE
Confidence 899998545 4887766445434444444445555555542 2335556667899999999743 2222 45556666
Q ss_pred EEEEecCCCceeEEeeCCCEE-EEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019091 183 LEEFTHQMKDGWGLATDGKVL-FGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 183 i~ti~~~~peGwGLt~Dg~~L-yvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
+-.-+++.|.|..+.+..+.| ||--|++++.-+.|.- .-.++|.-+- --|+. +.-....+|-+.|..|.|+-+
T Consensus 1150 lin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g-~gRR~i~~~L-qYPF~----itsy~~~fY~TDWk~n~vvsv 1223 (1289)
T KOG1214|consen 1150 LINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDG-TGRRVIQNNL-QYPFS----ITSYADHFYHTDWKRNGVVSV 1223 (1289)
T ss_pred EeecccCCCCCceeCcccceeeEEecCCcceeEecCCC-Ccchhhhhcc-cCcee----eeeccccceeeccccCceEEe
Confidence 666667788988888888777 5533788888888742 2222222111 12443 322234599999999999999
Q ss_pred eCCCCeEEEEE
Q 019091 262 SHEDGVVLGWV 272 (346)
Q Consensus 262 D~~TG~Vv~~I 272 (346)
|...++-....
T Consensus 1224 ~~~~~~~td~~ 1234 (1289)
T KOG1214|consen 1224 NKHSGQFTDEY 1234 (1289)
T ss_pred ecccccccccc
Confidence 99988755433
No 262
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=92.05 E-value=1.4 Score=44.99 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=69.3
Q ss_pred EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe-cC-C-Ccee
Q 019091 118 LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT-HQ-M-KDGW 194 (346)
Q Consensus 118 LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~-~~-~-peGw 194 (346)
++.|+| +++.|..||..||+.+-.+..+.-..-.-.. .++.+++.+-++.+|-|+|+.+.+++.+-. ++ . +.-.
T Consensus 146 VLlsag--~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn-~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 146 VLLSAG--SDNTVSIWNVGTGEALITLDHPDMVYSMSFN-RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hHhhcc--CCceEEEEeccCCceeeecCCCCeEEEEEec-cCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 556778 7899999999999987777766544443222 245688999999999999999999998772 32 1 1111
Q ss_pred EEeeCCCEEEEECC-----CCeEEEEeCCCCcE
Q 019091 195 GLATDGKVLFGSDG-----SSMLYQIDPQTLKV 222 (346)
Q Consensus 195 GLt~Dg~~LyvSdG-----s~~l~vIDp~T~kv 222 (346)
-+-.+|+ ++. -| ..++..+||.+++.
T Consensus 223 ifl~~g~-i~t-TGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 223 IFLASGK-IFT-TGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred EEeccCc-eee-eccccccccceeccCcccccC
Confidence 1334566 333 32 44788899888765
No 263
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.93 E-value=2.8 Score=45.14 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=95.0
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCc
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
++--...|+..++|+++++.|. +.-|++||..|++-+-++. -..+.-..=+..+|.++ +.+--++++-+.|....+
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgt--ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~-ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGT--EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRL-LSASSDGTIRLWDLGQQR 246 (735)
T ss_pred CccceeeeecCCcceEEEecCc--ccceEEeccccccceeeeeccccceEEEEEcCCCCeE-eecCCCceEEeeeccccc
Confidence 3333357788788899999985 4599999999997544443 11222222122234444 455568999999999999
Q ss_pred EEEEEecCCCceeEEe--eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC
Q 019091 182 KLEEFTHQMKDGWGLA--TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT 255 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt--~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s 255 (346)
-+.++.+...--|+|. ++=+++|..+.+..|+.=|..+++. ...+...-.|+..+ .+.-.+.-+|++-|.+
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tlick~daPv~~l-~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLICKEDAPVLKL-HLHEHDNSVWVTTTDS 319 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEeecCCCchhhh-hhccccCCceeeeccc
Confidence 9999987533457765 4457889888899999999998733 23333333465532 1111244568888744
No 264
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=91.88 E-value=17 Score=37.91 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=28.0
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEE
Q 019091 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Lyv 205 (346)
+|.+||++ .+++++++|+.- ....++.-+.+|..-|.--++.|.+
T Consensus 110 dG~~iy~s--~~~KvYvi~~~p-p~~~~i~~~i~ecg~l~l~~nvL~i 154 (603)
T COG4880 110 DGERIYVS--VNGKVYVIDKNP-PLLETIDCPIPECGILALGGNVLAI 154 (603)
T ss_pred CCcEEEEE--eCCeEEEEcCCC-chhhhcccCCccceEEEEcCcEEEE
Confidence 57889998 589999999653 3444554444454444444554444
No 265
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=91.86 E-value=2.5 Score=43.34 Aligned_cols=144 Identities=12% Similarity=0.120 Sum_probs=87.8
Q ss_pred eeCCEEEEEECCCCcEEE----------EEecCCCceeEEeeCC---CEEEEECCCCeEEEEeCCCCcE----EEEEEe-
Q 019091 167 WLQKTGFIYDQNNLNKLE----------EFTHQMKDGWGLATDG---KVLFGSDGSSMLYQIDPQTLKV----IRKDIV- 228 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~----------ti~~~~peGwGLt~Dg---~~LyvSdGs~~l~vIDp~T~kv----i~~I~V- 228 (346)
-..+.++|||..+..-.. ++..-..||+||+.+- .+|..+..+.+|..+|...... +....+
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~ 223 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF 223 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence 446677777765432221 2222125899998753 3555555577888888655333 221122
Q ss_pred ccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCC--eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019091 229 RYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG--VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG--~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
..+...+ ....+-+.+..+|+.+-.+..+.+-|+.++ +.-...+. + ..-.|.++|+|-...++-
T Consensus 224 ~~h~~~V-eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a---------h----~~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 224 SGHEDVV-EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA---------H----SAEVNCVAFNPFNEFILA 289 (422)
T ss_pred ecCCcce-ehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc---------c----CCceeEEEeCCCCCceEE
Confidence 1121111 111222336689999999999999999964 22222211 1 234799999999999999
Q ss_pred ecCCCCcEEEEEEeeccc
Q 019091 307 TGKLWPKLYEINLREMKR 324 (346)
Q Consensus 307 TGK~Wp~l~ev~l~~~~~ 324 (346)
||--..+|..-.|+.+++
T Consensus 290 T~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNK 307 (422)
T ss_pred eccCCCcEEEeechhccc
Confidence 999888888888765554
No 266
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.67 E-value=2.1 Score=43.37 Aligned_cols=200 Identities=12% Similarity=0.162 Sum_probs=114.5
Q ss_pred CCCCceeeeEE---EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CC
Q 019091 85 DQSPSIYTIQV---VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GE 160 (346)
Q Consensus 85 ~~~~~~~t~~V---v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~ 160 (346)
+..+.++.++- ..++.. ..-|.+||.++. .-+++.| .+.+|..|-.+- ..++.+..+..+. ||... .+
T Consensus 88 DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~--~~~~tvg--dDKtvK~wk~~~-~p~~tilg~s~~~--gIdh~~~~ 159 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ--TSFFTVG--DDKTVKQWKIDG-PPLHTILGKSVYL--GIDHHRKN 159 (433)
T ss_pred CceEEEEehhhhhhhheeec-ccCceeeEEecc--cceEEec--CCcceeeeeccC-Ccceeeecccccc--cccccccc
Confidence 55666666665 445532 245779999986 3344445 445777775443 2333333333321 23322 12
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecCCC--ceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeee
Q 019091 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~p--eGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~ 237 (346)
-+|+. ....+-++|..-...+.++..+.+ --.-+.|--..+.++-+ +..|.++|..+.+.++++..+. .
T Consensus 160 ~~FaT--cGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m------R 231 (433)
T KOG0268|consen 160 SVFAT--CGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM------R 231 (433)
T ss_pred ccccc--cCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec------c
Confidence 23332 245677888877777777775522 11123344456666664 7799999999999999999976 3
Q ss_pred ceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019091 238 LNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 238 lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
.|.+.|- ++..|+.--.+-+++-.|.....- -+ . .... -...|+. ++|+|.|++ ||+|-..-+
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~--p~---~---v~~d---hvsAV~d-VdfsptG~E-fvsgsyDks 295 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSR--PL---N---VHKD---HVSAVMD-VDFSPTGQE-FVSGSYDKS 295 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcc--cc---h---hhcc---cceeEEE-eccCCCcch-hccccccce
Confidence 3445444 456776554566777777766542 01 0 0011 1234554 889998775 567766554
No 267
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.63 E-value=17 Score=37.06 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCeEEEE--ECCCCcEEEEeccCCCee------EEEEEEe----CCEEEEE-EeeCCEEEEE---ECCCC----cEEEEE
Q 019091 127 RSSVRRV--ALETGKVEAINQMEGSYF------GEGLTLL----GEKLFQV-TWLQKTGFIY---DQNNL----NKLEEF 186 (346)
Q Consensus 127 ~s~V~~i--Dl~Tgkv~~~~~l~~~~F------geGit~~----g~~LY~l-tw~~~~v~V~---D~~tl----~~i~ti 186 (346)
.++|++| |.++|.+....... .++ ..|+++. .+.+|+. +-+++.+..| +..++ +++++|
T Consensus 126 ~n~l~~f~id~~~g~L~~v~~~~-~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGELTDVTDPA-APIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp T-EEEEEEEETTTTEEEE-CBTT-C-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred CCeEEEEEecCCCCcceEcCCCC-cccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 4565554 77788654432111 111 3567774 3567765 6677766554 33344 567888
Q ss_pred ecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCC--CcEEEEEEeccCCeeeeecee-eEee-----CCEEEEEecCCCe
Q 019091 187 THQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQT--LKVIRKDIVRYKGREVRNLNE-LEFI-----KGEVWANVWQTDC 257 (346)
Q Consensus 187 ~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T--~kvi~~I~V~~~G~pv~~lNE-LE~~-----~G~LyaNv~~sn~ 257 (346)
..+ -+||..+.....+||+++..--|+.++.+. ...-..+... .|..+..--| |... .|+|.|.....|+
T Consensus 205 ~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 205 KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred cCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence 874 479999999999999999989999998653 2222223221 1211111111 2221 3589999999999
Q ss_pred EEEEeCCC-CeEEEEEEC
Q 019091 258 IARISHED-GVVLGWVLL 274 (346)
Q Consensus 258 I~vID~~T-G~Vv~~I~l 274 (346)
..|-|-+. .+-++.+.+
T Consensus 284 f~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 284 FAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp EEEEESSTT--EEEEEEE
T ss_pred EEEEecCCCCcccceEEe
Confidence 99999775 677777755
No 268
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.62 E-value=7.9 Score=38.08 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=86.0
Q ss_pred CeEEEEECCCCcEEEE-ec---c-CCCeeEEEEEE-eCCE-EEEE-Eee-C--CEEEEEECCCCcEEEEEecCCCcee--
Q 019091 128 SSVRRVALETGKVEAI-NQ---M-EGSYFGEGLTL-LGEK-LFQV-TWL-Q--KTGFIYDQNNLNKLEEFTHQMKDGW-- 194 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~-~~---l-~~~~FgeGit~-~g~~-LY~l-tw~-~--~~v~V~D~~tl~~i~ti~~~~peGw-- 194 (346)
-+|.++|++++++... .+ . ...++. .+.. .+++ +++. .-+ . -.+..+|+.+.+..-.+.. ..+||
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~-~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-~~~~Wv~ 235 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLT-RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-TSDGWVD 235 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEE-EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-ESSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcc-cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-cCCccee
Confidence 3667789998886421 12 1 223333 2333 2333 5443 222 2 2467788877654333321 12344
Q ss_pred -----EEe-eCC-CEEEEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE-Eec---CCCeEEEE
Q 019091 195 -----GLA-TDG-KVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA-NVW---QTDCIARI 261 (346)
Q Consensus 195 -----GLt-~Dg-~~LyvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya-Nv~---~sn~I~vI 261 (346)
.+. +++ ..|++++ |-..|+.+|..+.+.. .+..+.-.+..+..+...++.||- +.. ....|.++
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 333 454 4677776 5679999999887733 333322344333334444678884 332 24479999
Q ss_pred eCC-CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 262 SHE-DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 262 D~~-TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
+.+ .|++ ..+.. .. ... +.++++|+++.+..+.
T Consensus 313 ~~~~~~~~-~~LT~---~~---------~~~-~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 313 SLDSGGEP-KCLTC---ED---------GDH-YSASFSPDGKYYVDTY 346 (353)
T ss_dssp ETTETTEE-EESST---TS---------STT-EEEEE-TTSSEEEEEE
T ss_pred EeCCCCCe-EeccC---CC---------CCc-eEEEECCCCCEEEEEE
Confidence 999 6654 33311 10 011 5799999999887763
No 269
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=2.7 Score=45.21 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=80.1
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe---CCEEEEEEeeCCEEEEEECCCCc
Q 019091 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL---GEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~---g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
-|.|-|+-+|+|++.+-+|. | .-.+| -.+.+....||+|.... ..--|++-..++.+-++ +.++
T Consensus 352 iyPq~L~hsPNGrfV~Vcgd-G--EyiIy--------Tala~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfk 418 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGD-G--EYIIY--------TALALRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFK 418 (794)
T ss_pred cchHHhccCCCCcEEEEecC-c--cEEEE--------EeeehhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecce
Confidence 34588999999998877772 3 22222 23456677889888773 22567776667777777 8899
Q ss_pred EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019091 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
..++|... +....--|..|..-.+++.+.+.|=++.+.+++|.|..
T Consensus 419 e~ksi~~~---~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~ 464 (794)
T KOG0276|consen 419 EHKSIRPD---MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTS 464 (794)
T ss_pred eccccccc---cceeeecCCceEEEEeCCeEEEEEcccceEEEEEeecc
Confidence 99999853 22333447888888889999999999999999999965
No 270
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=91.40 E-value=0.38 Score=31.85 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=27.5
Q ss_pred CceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 289 IDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 289 ~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
...|||||+|+.++++|-|...=..|+...+.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 45789999999999999998887888887764
No 271
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=91.24 E-value=7.8 Score=40.99 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=29.0
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+..-|+.+|++..-.-. |.+.-.-|++|+||++.|||.
T Consensus 482 ~~~~~~~~g~~~rf~~~------------P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVG------------PNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred eeeccccccceeeeccC------------CCCcccccceECCCCCEEEEE
Confidence 66778888887554411 345567999999999999995
No 272
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=91.23 E-value=5.1 Score=44.58 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=70.5
Q ss_pred eccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEec--CCCceeEEeeCCCEEEEECC-CC--eEEEEe
Q 019091 144 NQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTH--QMKDGWGLATDGKVLFGSDG-SS--MLYQID 216 (346)
Q Consensus 144 ~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~--~~peGwGLt~Dg~~LyvSdG-s~--~l~vID 216 (346)
+.++... ..||+.+ .+.+|-.+...+.|-.-..+-.+...-|.- .+|||.++.+-++.+|-+|. -+ .+..+|
T Consensus 1020 l~~p~~I-iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~Ld 1098 (1289)
T KOG1214|consen 1020 LSLPGSI-IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLD 1098 (1289)
T ss_pred Eecccce-eeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecC
Confidence 4455432 5667775 567887777777666555443333333333 37999999999999999985 33 344555
Q ss_pred CCCCcEEEEEEecc--CCeeeeeceeeEeeCCEEEEEecCCCe--E--EEEeCCCCeEEEE
Q 019091 217 PQTLKVIRKDIVRY--KGREVRNLNELEFIKGEVWANVWQTDC--I--ARISHEDGVVLGW 271 (346)
Q Consensus 217 p~T~kvi~~I~V~~--~G~pv~~lNELE~~~G~LyaNv~~sn~--I--~vID~~TG~Vv~~ 271 (346)
-.-.|+ +--.+ +.+.+- ++.+.|.||-+.|..+. | +-+|-++.+|+--
T Consensus 1099 G~~rkv---Lf~tdLVNPR~iv----~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin 1152 (1289)
T KOG1214|consen 1099 GSERKV---LFYTDLVNPRAIV----VDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN 1152 (1289)
T ss_pred CceeeE---EEeecccCcceEE----eecccCceeeccccccCCcceeeccCCccceEEee
Confidence 332222 22222 223322 66778999999998652 3 3345555555433
No 273
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=91.21 E-value=0.68 Score=31.25 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=22.9
Q ss_pred EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCC
Q 019091 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T 219 (346)
++-+++.+.+.--.++.+++++|+.+.+..|+.+|++|
T Consensus 3 ~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 3 VLWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EEEEEE-SS---S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred eeEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 44445543211123566789999999999999999986
No 274
>PRK10115 protease 2; Provisional
Probab=91.19 E-value=26 Score=38.21 Aligned_cols=108 Identities=12% Similarity=0.005 Sum_probs=63.0
Q ss_pred eeEEEecCCE-EEEE--cCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe-----eCCEEEEEECCC
Q 019091 108 QGLLYAENDT-LFES--TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-----LQKTGFIYDQNN 179 (346)
Q Consensus 108 qGL~~~~d~~-LyeS--tGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw-----~~~~v~V~D~~t 179 (346)
.++.++|||+ |..+ ++..+...|.++|+++|+++... ++...+....+.+++.+|.... ....++..+..|
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 4677888885 3333 33234567999999999754332 2222234445556777766532 346899999988
Q ss_pred Cc--EEEEEecCCCcee----EEeeCCCEEEE-EC-C-CCeEEEEeC
Q 019091 180 LN--KLEEFTHQMKDGW----GLATDGKVLFG-SD-G-SSMLYQIDP 217 (346)
Q Consensus 180 l~--~i~ti~~~~peGw----GLt~Dg~~Lyv-Sd-G-s~~l~vIDp 217 (346)
.. -.--+... .+.+ ..+.|++++++ +. + ++.++++|.
T Consensus 209 ~~~~d~lv~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 209 PASQDELVYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ChhHCeEEEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 82 21122211 1112 23458888776 22 3 668888884
No 275
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.97 E-value=0.33 Score=50.27 Aligned_cols=179 Identities=18% Similarity=0.107 Sum_probs=103.6
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEec
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~ 188 (346)
-+-++.||+-+.-.|+.| -|..+|..|+++...+.+-... .-++..-+.=|.+.-+.+-+|||| +.+..+.-+.-
T Consensus 134 ~~~ytrnGrhlllgGrKG--HlAa~Dw~t~~L~~Ei~v~Etv--~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~ 208 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKG--HLAAFDWVTKKLHFEINVMETV--RDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKR 208 (545)
T ss_pred eeeecCCccEEEecCCcc--ceeeeecccceeeeeeehhhhh--hhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhh
Confidence 567777886555557666 8999999999999998775442 334554455566667788899999 45555555442
Q ss_pred CCCceeEEee-CCCEEEEE-CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCC
Q 019091 189 QMKDGWGLAT-DGKVLFGS-DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG 266 (346)
Q Consensus 189 ~~peGwGLt~-Dg~~LyvS-dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG 266 (346)
-. +--.|.. .-..|.++ +.++.+.-.|..++++++.+..+.+-..+..-| +.|.-+-.-. ...+|+.=.|.+-
T Consensus 209 ~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN---P~NaVih~Gh-snGtVSlWSP~sk 283 (545)
T KOG1272|consen 209 HI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN---PYNAVIHLGH-SNGTVSLWSPNSK 283 (545)
T ss_pred cC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC---CccceEEEcC-CCceEEecCCCCc
Confidence 10 0001211 12455554 568899999999999999888865311111001 0111111110 1223333344444
Q ss_pred eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 267 ~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+-+..| +-- ....++||++++|..+--||..
T Consensus 284 ePLvKi--------LcH-----~g~V~siAv~~~G~YMaTtG~D 314 (545)
T KOG1272|consen 284 EPLVKI--------LCH-----RGPVSSIAVDRGGRYMATTGLD 314 (545)
T ss_pred chHHHH--------Hhc-----CCCcceEEECCCCcEEeecccc
Confidence 322222 111 1245889999999988888754
No 276
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=90.94 E-value=4.2 Score=42.28 Aligned_cols=151 Identities=12% Similarity=0.032 Sum_probs=96.6
Q ss_pred CCEEEEEcCCC---CCC--eEEEEECCCCcEEEEe---ccCCCeeEEEEEEeCCEEEEEEeeC------CEEEEEECCCC
Q 019091 115 NDTLFESTGLY---GRS--SVRRVALETGKVEAIN---QMEGSYFGEGLTLLGEKLFQVTWLQ------KTGFIYDQNNL 180 (346)
Q Consensus 115 d~~LyeStGly---g~s--~V~~iDl~Tgkv~~~~---~l~~~~FgeGit~~g~~LY~ltw~~------~~v~V~D~~tl 180 (346)
++.+|+=.|.- ... .|.++|+.+..-.... ..|....|.-++..++.||+.--.. +.+..||+.|.
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~ 149 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTR 149 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCC
Confidence 45666644321 122 4889999885433332 3343445677777889999875555 48999999877
Q ss_pred cEEEEEecC----CCceeEEeeCCCEEEEECC-------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE
Q 019091 181 NKLEEFTHQ----MKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (346)
Q Consensus 181 ~~i~ti~~~----~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly 249 (346)
+..---+.+ ...|-.++..|++|||-=| .|.++++|++|.+-..-...+....|..- =.+..+++++|
T Consensus 150 ~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g-H~~~~~~~~~~ 228 (482)
T KOG0379|consen 150 TWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG-HAMVVVGNKLL 228 (482)
T ss_pred cEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC-ceEEEECCeEE
Confidence 654433321 2466678888899999422 67999999999996544444543233221 02556677777
Q ss_pred E------EecCCCeEEEEeCCCC
Q 019091 250 A------NVWQTDCIARISHEDG 266 (346)
Q Consensus 250 a------Nv~~sn~I~vID~~TG 266 (346)
+ ..-..+++..+|..+.
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~~ 251 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLSTW 251 (482)
T ss_pred EEeccccCCceecceEeeecccc
Confidence 6 3334578999999993
No 277
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=10 Score=39.83 Aligned_cols=164 Identities=13% Similarity=0.012 Sum_probs=102.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC-EEEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCE
Q 019091 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKV 202 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~-~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~ 202 (346)
++..|..+|....+......-.-..=--|+....+ .....--.+|.++|+|..+.+++.+|... +=-..+.+|-..-
T Consensus 278 r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccC
Confidence 45577777777765444311111111234555443 34445577899999999888888888643 1123345676666
Q ss_pred EEEEC-C--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC--CEEEEEecC-CCeEEEEeCCCCeEEEEEECCc
Q 019091 203 LFGSD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK--GEVWANVWQ-TDCIARISHEDGVVLGWVLLPN 276 (346)
Q Consensus 203 LyvSd-G--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~--G~LyaNv~~-sn~I~vID~~TG~Vv~~I~l~~ 276 (346)
|.++= | +..|.+.|+.+++.+..+..+.. |- -|-|-. +++-.+... .|.|.+=+-.+-+.++.+.-
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ---Vc---sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-- 429 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARIDSVDTGSQ---VC---SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-- 429 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEecccccCCc---ee---eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC--
Confidence 66665 4 66999999999999988887652 21 244442 456666644 45677777777666665532
Q ss_pred hhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 277 LRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 277 l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
+ ..-|+. +|++|||.++.+.+
T Consensus 430 -------H---~~RVl~-la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 430 -------H---TSRVLY-LALSPDGETIVTGA 450 (484)
T ss_pred -------C---cceeEE-EEECCCCCEEEEec
Confidence 1 122776 99999988766554
No 278
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=90.75 E-value=4.6 Score=42.69 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=105.3
Q ss_pred EEEEcCCCCCCeEEEEECCCCc----EEEEeccC-CCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEecC--
Q 019091 118 LFESTGLYGRSSVRRVALETGK----VEAINQME-GSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-- 189 (346)
Q Consensus 118 LyeStGlyg~s~V~~iDl~Tgk----v~~~~~l~-~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-- 189 (346)
-|.+++ .++++++||...-| |+.....+ .+.=..-++... +.++.+--.++.|-+.|...+.+--.+.+.
T Consensus 283 ~FlT~s--~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A 360 (641)
T KOG0772|consen 283 EFLTCS--YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA 360 (641)
T ss_pred ceEEec--CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence 577888 55699999988754 33322222 222233344432 455666777888888886555444444331
Q ss_pred -----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeecee-eEeeCCEEEE------EecCCCe
Q 019091 190 -----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFIKGEVWA------NVWQTDC 257 (346)
Q Consensus 190 -----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE-LE~~~G~Lya------Nv~~sn~ 257 (346)
.-.-..+++||++|..=-.++++-++|...++.--.+..+-. .++...|- ... +.+|.+ |--....
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSP-DDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-ccCCCCccccCC-CceEEEecccccCCCCCce
Confidence 112345788999887644589999999998875322222210 11111111 111 334332 2223457
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+...|+.|...+.+|++++. ...-++|+|.-+.+|++..+
T Consensus 439 L~f~d~~t~d~v~ki~i~~a-------------Svv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDISTA-------------SVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred EEEEeccceeeEEEecCCCc-------------eEEEEeecchhhheeeecCC
Confidence 99999999999999988532 23457899999999988665
No 279
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=90.75 E-value=1.4 Score=46.32 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=74.1
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcE--EEEeccCCCeeE-E--EEEEeCCEEEEEE-----eeCC
Q 019091 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV--EAINQMEGSYFG-E--GLTLLGEKLFQVT-----WLQK 170 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv--~~~~~l~~~~Fg-e--Git~~g~~LY~lt-----w~~~ 170 (346)
|++..=+..+.|+.||..+.|-| +++++.+||++.-|- .-...|+. +|. . +++++.+.|+..+ -..+
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred cCCCCceeEEEeccccchhhhcc--CCCceeeeeccccccchhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCc
Confidence 66655567899999999999988 788999999998653 22223332 232 2 2333434444332 2256
Q ss_pred EEEEEECCCCcEEEEEecCCCceeE-Ee--eCCCEEEEECCCCeEEEE-eCC
Q 019091 171 TGFIYDQNNLNKLEEFTHQMKDGWG-LA--TDGKVLFGSDGSSMLYQI-DPQ 218 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~peGwG-Lt--~Dg~~LyvSdGs~~l~vI-Dp~ 218 (346)
.+++||+.|+..+.+|++. ..-.. .. |-=+.++++-|+..++++ ||.
T Consensus 438 ~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred eEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 8999999999999999985 12222 22 334567887776777765 543
No 280
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.62 E-value=9.3 Score=39.61 Aligned_cols=149 Identities=11% Similarity=0.112 Sum_probs=77.0
Q ss_pred eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEE--EEEe
Q 019091 151 FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR--KDIV 228 (346)
Q Consensus 151 FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~--~I~V 228 (346)
|+..+...++.=|++.-.++.-.+|....++..+.-+ + -......+++ ..+-+.+++|-++. +++... ++++
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~-g--~~~vw~~~n~-yAv~~~~~~I~I~k--n~~~~~~k~i~~ 107 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS-G--LSFVWSSRNR-YAVLESSSTIKIYK--NFKNEVVKSIKL 107 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE----SEEEE-TSSE-EEEE-TTS-EEEEE--TTEE-TT-----
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc-e--eEEEEecCcc-EEEEECCCeEEEEE--cCccccceEEcC
Confidence 4555666544334444668888888876666644322 1 1222333333 33335466666652 333333 5555
Q ss_pred ccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 229 RYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
... ...| ..|.|..-. .++.|...|.++++++.+|+++++ ..+.|+++++.+-+++
T Consensus 108 ~~~------~~~I--f~G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~~v---------------k~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 108 PFS------VEKI--FGGNLLGVK-SSDFICFYDWETGKLIRRIDVSAV---------------KYVIWSDDGELVALVT 163 (443)
T ss_dssp SS-------EEEE--E-SSSEEEE-ETTEEEEE-TTT--EEEEESS-E----------------EEEEE-TTSSEEEEE-
T ss_pred Ccc------cceE--EcCcEEEEE-CCCCEEEEEhhHcceeeEEecCCC---------------cEEEEECCCCEEEEEe
Confidence 321 1112 236655433 255799999999999999977332 4588999999999998
Q ss_pred CCCCcEEEEEEeeccccccCC
Q 019091 309 KLWPKLYEINLREMKRERKDG 329 (346)
Q Consensus 309 K~Wp~l~ev~l~~~~~~~~~~ 329 (346)
|.-=.+++-.+....+..++|
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB
T ss_pred CCeEEEEEecchhcccccccC
Confidence 887777777766555566677
No 281
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=90.54 E-value=5.3 Score=41.58 Aligned_cols=114 Identities=18% Similarity=0.078 Sum_probs=76.9
Q ss_pred CEEEEEcCCC--C--CCeEEEEECCCCcEEEEec---cCCCeeEEEEEEeCCEEEEE---Ee---eCCEEEEEECCCCcE
Q 019091 116 DTLFESTGLY--G--RSSVRRVALETGKVEAINQ---MEGSYFGEGLTLLGEKLFQV---TW---LQKTGFIYDQNNLNK 182 (346)
Q Consensus 116 ~~LyeStGly--g--~s~V~~iDl~Tgkv~~~~~---l~~~~FgeGit~~g~~LY~l---tw---~~~~v~V~D~~tl~~ 182 (346)
+.||+=.|.. . -..|+.+|+.|++-..... .|+.-.+..++..+++||+- ++ ..+.+++||+.+.+-
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W 202 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTW 202 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccc
Confidence 5677665532 1 1389999999998655443 35556789999999999985 22 358899999998773
Q ss_pred EEEEec-C----CCceeEEeeCCCEEEEE---C----CCCeEEEEeCCCCcEEEEEEecc
Q 019091 183 LEEFTH-Q----MKDGWGLATDGKVLFGS---D----GSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 183 i~ti~~-~----~peGwGLt~Dg~~LyvS---d----Gs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
. ++.+ + ...|-+++-.++++|+- + .-+.++.+|..+.+-....+-++
T Consensus 203 ~-~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~ 261 (482)
T KOG0379|consen 203 S-ELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGD 261 (482)
T ss_pred e-ecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCC
Confidence 3 3332 1 13666777667777763 2 25789999999977763333343
No 282
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=90.50 E-value=25 Score=36.87 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=103.1
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEec
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~ 188 (346)
-|-...+|+-+.|.| -+.++..||..+|.+..+..+...+ +--+...++.=|+..-.++.++|+-..--+.+++|..
T Consensus 281 slKWnk~G~yilS~~--vD~ttilwd~~~g~~~q~f~~~s~~-~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 281 SLKWNKKGTYILSGG--VDGTTILWDAHTGTVKQQFEFHSAP-ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred EEEEcCCCCEEEecc--CCccEEEEeccCceEEEeeeeccCC-ccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence 444555666677877 4569999999999999998887643 2222334556666666678888887777777788764
Q ss_pred CCCceeEEeeC--CCEEEEECCCCeEEEEe-----------CCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC
Q 019091 189 QMKDGWGLATD--GKVLFGSDGSSMLYQID-----------PQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT 255 (346)
Q Consensus 189 ~~peGwGLt~D--g~~LyvSdGs~~l~vID-----------p~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s 255 (346)
-..+=-+|-+| |..|-.+-.+.++-++. ..+.++ -+|.=.-.|.-..++|+ |...+..-.+
T Consensus 358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei-~t~~wsp~g~v~~n~~~-----~~~l~sas~d 431 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI-YTIKWSPTGPVTSNPNM-----NLMLASASFD 431 (524)
T ss_pred ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce-eeEeecCCCCccCCCcC-----CceEEEeecC
Confidence 22233344443 55555533344444444 222222 12211111111122222 4455555578
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEE
Q 019091 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRI 304 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~L 304 (346)
++|.+-|.+.|..+.++.= ++ .--+.+||+|++.++
T Consensus 432 stV~lwdv~~gv~i~~f~k---------H~----~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMK---------HQ----EPVYSVAFSPNGRYL 467 (524)
T ss_pred CeEEEEEccCCceeEeecc---------CC----CceEEEEecCCCcEE
Confidence 9999999999999988621 11 124678899887743
No 283
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=90.28 E-value=5 Score=41.55 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=38.0
Q ss_pred eeCCEEEEEECCCCcEEEEEecCCC--ceeE---EeeCCCEEEE----ECC-CCeEEEEeCCCCcEEEEEEe
Q 019091 167 WLQKTGFIYDQNNLNKLEEFTHQMK--DGWG---LATDGKVLFG----SDG-SSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~~p--eGwG---Lt~Dg~~Lyv----SdG-s~~l~vIDp~T~kvi~~I~V 228 (346)
+..++..|+|..+.+...--..+.. .+++ +. +++.+|+ .+| ...||.|||+|.+.++=++|
T Consensus 364 ~~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~v-e~G~aYi~Vtt~~g~~~~IY~iDp~TatAtKGl~V 434 (435)
T PF14298_consen 364 SDAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYV-ENGKAYIPVTTEDGSDPYIYKIDPATATATKGLKV 434 (435)
T ss_pred CccceEEEEEccCceeEEeccCChhhccccccceEe-eCCEEEEEEeecCCCceeEEEEcCcccccccceEe
Confidence 4467888999876554443222211 3444 33 4455665 246 47999999999998776555
No 284
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.24 E-value=6.7 Score=41.55 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCE---EEEEEeeCCEEEEEECCCCcEEEEEecC--CC
Q 019091 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEK---LFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MK 191 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~---LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~p 191 (346)
.|..+++ ...|..++...|++..+...+..|=+.-...++++ ||-. -.+.++..++.++.+.+..+..+ .+
T Consensus 72 ~lvlgt~---~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 72 MLVLGTP---QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-GADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred EEEeecC---CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-CCceeEEEEecccceeeeeeccCCCcc
Confidence 3455655 35899999999999999988877644444555544 5544 34577888899999998888764 34
Q ss_pred ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019091 192 DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 192 eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
.-.-+++||+.|.++ +.+|.++|.+|.+++.+.+
T Consensus 148 ~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ft 181 (541)
T KOG4547|consen 148 SSLCISPDGKILLTA--SRQIKVLDIETKEVVITFT 181 (541)
T ss_pred ceEEEcCCCCEEEec--cceEEEEEccCceEEEEec
Confidence 445678999988875 6799999999999875554
No 285
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=90.04 E-value=3.1 Score=43.81 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=99.3
Q ss_pred EEEeCCEEEEEEeeCCEEEEEECC---CCcEEEEEecCCCce----eEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019091 155 LTLLGEKLFQVTWLQKTGFIYDQN---NLNKLEEFTHQMKDG----WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 155 it~~g~~LY~ltw~~~~v~V~D~~---tl~~i~ti~~~~peG----wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
+++.+..=+|-|-..+-|-|.|.. +...+..++-..++- .-|.+||..|++--..++|.++|.++-+..-+-+
T Consensus 425 vtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae 504 (705)
T KOG0639|consen 425 VTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE 504 (705)
T ss_pred EEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh
Confidence 444454444445556777777754 333444444322232 2378999999996558899999977644432223
Q ss_pred eccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019091 228 VRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 228 V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
....+-..+. |..- |-+|--++..+..|.|-|..+..++..+. |.++ --..|-+++||-+||
T Consensus 505 ltssapaCyA---La~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-----------GhtD--GascIdis~dGtklW- 567 (705)
T KOG0639|consen 505 LTSSAPACYA---LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----------GHTD--GASCIDISKDGTKLW- 567 (705)
T ss_pred cCCcchhhhh---hhcCCccceeeeeccCCcEEEEEcccceeeeccc-----------CCCC--CceeEEecCCCceee-
Confidence 3322222221 2222 44555555568889999999998887661 1222 235688999999998
Q ss_pred ecCCCCcEEEEEEeeccccccCCC
Q 019091 307 TGKLWPKLYEINLREMKRERKDGF 330 (346)
Q Consensus 307 TGK~Wp~l~ev~l~~~~~~~~~~~ 330 (346)
||...+.+.-=+|.+.++..+-.|
T Consensus 568 TGGlDntvRcWDlregrqlqqhdF 591 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHDF 591 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhhh
Confidence 777888888878877776666654
No 286
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=89.69 E-value=8.2 Score=41.52 Aligned_cols=185 Identities=11% Similarity=0.163 Sum_probs=100.7
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019091 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
..+|.+++.|..+.|.+ .+.+|++|...||+-+..+.++...--....+.++.-..+.-.+..++++|+.=+..+..-
T Consensus 403 Vr~iSvdp~G~wlasGs--dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGS--DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVG 480 (733)
T ss_pred EEEEEecCCcceeeecC--CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhc
Confidence 36777877666666666 5669999999999999999999866444444444443333333444999998655332221
Q ss_pred ecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEE---EEEeccCCeeeeeceeeEee-CCEEEEEecCC---CeEE
Q 019091 187 THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR---KDIVRYKGREVRNLNELEFI-KGEVWANVWQT---DCIA 259 (346)
Q Consensus 187 ~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~---~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s---n~I~ 259 (346)
+.. +-.+=.+. -+.-..++..+-.+..+... .+.+. +++++ +.++|. .|.-+|++-.+ ..|+
T Consensus 481 ~t~--ell~~~~~-----~~~p~~~~~~W~~~~~~e~~~~v~~~I~-~~k~i---~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 481 PTK--ELLASAPN-----ESEPDAAVVTWSRASLDELEKGVCIVIK-HPKSI---RQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred chh--hhhhcCCC-----ccCCcccceeechhhhhhhccceEEEEe-cCCcc---ceeeeecCCceEEEeccCCCcceEE
Confidence 111 10010100 00112233333333222111 22332 23443 467787 45555555332 2344
Q ss_pred EEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019091 260 RISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 260 vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
+=+...++.. . .++. ....+-.+.|.|-..+|||+-|+.=.+|-+
T Consensus 550 iHQLSK~~sQ--~---PF~k--------skG~vq~v~FHPs~p~lfVaTq~~vRiYdL 594 (733)
T KOG0650|consen 550 IHQLSKRKSQ--S---PFRK--------SKGLVQRVKFHPSKPYLFVATQRSVRIYDL 594 (733)
T ss_pred EEeccccccc--C---chhh--------cCCceeEEEecCCCceEEEEeccceEEEeh
Confidence 4444444432 2 1211 122345688999999999999999888865
No 287
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.68 E-value=17 Score=33.72 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCCeEEEEECCC----C-cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCC
Q 019091 117 TLFESTGLYGRSSVRRVALET----G-KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK 191 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~T----g-kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~p 191 (346)
.|.++.. .+|.++.... . +..+++.++..+ ..++..++.+.+.+ .+.-.++|..++....-++....
T Consensus 107 ~L~va~k----k~i~i~~~~~~~~~f~~~~ke~~lp~~~--~~i~~~~~~i~v~~--~~~f~~idl~~~~~~~l~~~~~~ 178 (275)
T PF00780_consen 107 RLCVAVK----KKILIYEWNDPRNSFSKLLKEISLPDPP--SSIAFLGNKICVGT--SKGFYLIDLNTGSPSELLDPSDS 178 (275)
T ss_pred EEEEEEC----CEEEEEEEECCcccccceeEEEEcCCCc--EEEEEeCCEEEEEe--CCceEEEecCCCCceEEeCccCC
Confidence 3555544 2777776654 2 677888888776 44777799999888 67788899987766544432210
Q ss_pred -----------ceeEE--eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019091 192 -----------DGWGL--ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 192 -----------eGwGL--t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
...++ -++++.|..-| +.-.++|.+ ++..++-.+.....|. .+.+...+|++- ..+.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~--~~g~fv~~~-G~~~r~~~i~W~~~p~----~~~~~~pyli~~--~~~~i 249 (275)
T PF00780_consen 179 SSSFKSRNSSSKPLGIFQLSDNEFLLCYD--NIGVFVNKN-GEPSRKSTIQWSSAPQ----SVAYSSPYLIAF--SSNSI 249 (275)
T ss_pred cchhhhcccCCCceEEEEeCCceEEEEec--ceEEEEcCC-CCcCcccEEEcCCchh----EEEEECCEEEEE--CCCEE
Confidence 11222 23455555443 566677753 4444444444433443 367777888873 56889
Q ss_pred EEEeCCCCeEEEEEECCchh
Q 019091 259 ARISHEDGVVLGWVLLPNLR 278 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l~ 278 (346)
-+.+..+|+.+.+|++++++
T Consensus 250 EV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 250 EVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred EEEECcCCcEEEEEECCCEE
Confidence 99999999999999876543
No 288
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=89.64 E-value=4.1 Score=41.89 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=59.0
Q ss_pred EEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe---------CCEEEEEEeeCCEEEEEEC---CCCcEEEEEe
Q 019091 120 ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL---------GEKLFQVTWLQKTGFIYDQ---NNLNKLEEFT 187 (346)
Q Consensus 120 eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~---------g~~LY~ltw~~~~v~V~D~---~tl~~i~ti~ 187 (346)
+..|+|| +.+++|.-.+++..+.++++.. |+.+. .+.-|+---.+..++-+=. +|.+....+.
T Consensus 222 v~d~lyg-~~lhvy~w~~~~~~QtidL~~~----gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~vis 296 (476)
T KOG0918|consen 222 VEDGLYG-SHLHVYQWSPGELKQTIDLGDT----GLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVIS 296 (476)
T ss_pred hhcccee-eeeEEEecCCccceeEEecCCC----CcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEe
Confidence 4456777 6999999999999999988762 22221 1334443333333332211 2222222222
Q ss_pred cC--CCceeE------------EeeCCCEEEEEC-CCCeEEEE---eCCCCcEEEEEEecc
Q 019091 188 HQ--MKDGWG------------LATDGKVLFGSD-GSSMLYQI---DPQTLKVIRKDIVRY 230 (346)
Q Consensus 188 ~~--~peGwG------------Lt~Dg~~LyvSd-Gs~~l~vI---Dp~T~kvi~~I~V~~ 230 (346)
++ .-++|- ++-|.++||+|+ -...|... ||.+-++...|-+|.
T Consensus 297 vp~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG 357 (476)
T KOG0918|consen 297 VPPLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGG 357 (476)
T ss_pred cCccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECc
Confidence 21 123332 456899999998 45555555 466666666666653
No 289
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=89.52 E-value=0.55 Score=38.00 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=25.3
Q ss_pred ceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 290 DVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 290 ~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..+|||+++|+++.|||+.=.-.+|+.-+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 468999999999999999877777776654
No 290
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=89.46 E-value=18 Score=36.90 Aligned_cols=194 Identities=12% Similarity=0.034 Sum_probs=117.9
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019091 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
.++|...|.-.+++++| -++.+++||..|..-+..+.=...+ +-.-+...+..+|... .+..|-..|...++-..+
T Consensus 238 V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt~~t 314 (460)
T KOG0285|consen 238 VYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKTMIT 314 (460)
T ss_pred eEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCceeEe
Confidence 36777777667788888 6789999999998655554322222 2222233455666554 357888899888888777
Q ss_pred EecCCCceeEEe-eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCC
Q 019091 186 FTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 186 i~~~~peGwGLt-~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~ 264 (346)
+.+-...-.+++ +....+|+|-+.+.+-.++...++....+.-.. ..+|.|+.-.+-+|+.-.....|..=|.+
T Consensus 315 lt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~-----~iintl~~nsD~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 315 LTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHN-----AIINTLSVNSDGVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccccc-----ceeeeeeeccCceEEEcCCceEEEEEecC
Confidence 765322333454 235578999899999999977777666633221 24566766544455544445567888888
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019091 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
+|---..... -..+.. ...+.-...-+||..+-|| |||.-.-+|
T Consensus 390 sg~nyQ~~~t-~vqpGS----l~sEagI~as~fDktg~rl-it~eadKtI 433 (460)
T KOG0285|consen 390 SGHNYQRGQT-IVQPGS----LESEAGIFASCFDKTGSRL-ITGEADKTI 433 (460)
T ss_pred cCcccccccc-cccCCc----cccccceeEEeecccCceE-EeccCCcce
Confidence 8864433311 001110 0123345667898766664 677666554
No 291
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.21 E-value=2.1 Score=43.63 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=68.9
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCC------eeEEEEEEeCCEEEEEEee--CCEEEEEECC
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGS------YFGEGLTLLGEKLFQVTWL--QKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~------~FgeGit~~g~~LY~ltw~--~~~v~V~D~~ 178 (346)
.-|.|++||+++++.| ++ ..++||.++|--+++.. .+.. .|+. ...+..||+++-. .+.+-..|..
T Consensus 190 ~DL~FS~dgk~lasig--~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~~~~v~~~~~~ 264 (398)
T KOG0771|consen 190 KDLDFSPDGKFLASIG--AD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFPGGGVRLCDIS 264 (398)
T ss_pred ccceeCCCCcEEEEec--CC-ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecCCCCceeEEEee
Confidence 6899999999998887 54 99999999995444442 3322 1331 1122345555433 3444445543
Q ss_pred CC---------cEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEE
Q 019091 179 NL---------NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (346)
Q Consensus 179 tl---------~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~ 225 (346)
.. +.+..++. -.-+.++.||+.+-+.--++.|.++|..+++...-
T Consensus 265 ~w~~~~~l~~~~~~~~~~s--iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 265 LWSGSNFLRLRKKIKRFKS--ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred eeccccccchhhhhhccCc--ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe
Confidence 22 22333321 23457889999887744488999999988776543
No 292
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=89.18 E-value=0.52 Score=48.15 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=54.4
Q ss_pred CcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCC---cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 105 AFTQGLLYAEND-TLFESTGLYGRSSVRRVALETG---KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 105 ~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tg---kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
+...-+.++=|+ .||+|+=+.| .|+.||...- ++..++-++ |+-..+..+-++.....+ .-++.+
T Consensus 312 ~LITDilISmDDRFLYvs~WLHG--DirQYdIsDP~n~kLtgQi~lG------G~i~~~s~vkvl~~e~~~---~~~ea~ 380 (476)
T KOG0918|consen 312 GLITDILISLDDRFLYVSNWLHG--DIRQYDISDPKNPKLTGQIFLG------GSIQKGSPVKVLEEEGLK---KQPEAL 380 (476)
T ss_pred hhhheeEEeecCcEEEEEeeeec--ceeeeccCCCCCcceEEEEEEC------cEeecCCceEEecccccc---CCCccc
Confidence 334455666555 5999998877 7999987653 344444443 333333334444333211 233344
Q ss_pred cEEEEEecCCCceeEEeeCCCEEEEECC
Q 019091 181 NKLEEFTHQMKDGWGLATDGKVLFGSDG 208 (346)
Q Consensus 181 ~~i~ti~~~~peGwGLt~Dg~~LyvSdG 208 (346)
.+.++==-+.|.-.-|+-||++|||++.
T Consensus 381 ~vKGrkl~GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 381 YVKGRKLRGGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred eecCccccCCceeEEeccCCcEEEEEch
Confidence 4444322234888899999999999874
No 293
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=89.09 E-value=12 Score=37.29 Aligned_cols=193 Identities=17% Similarity=0.215 Sum_probs=114.8
Q ss_pred eeEEEecCC-----EEEEEcCCCCCCeEEEEECC--CCcEEEEeccC---CCeeEEEEEEe--C---CEEEEEEeeCCEE
Q 019091 108 QGLLYAEND-----TLFESTGLYGRSSVRRVALE--TGKVEAINQME---GSYFGEGLTLL--G---EKLFQVTWLQKTG 172 (346)
Q Consensus 108 qGL~~~~d~-----~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~l~---~~~FgeGit~~--g---~~LY~ltw~~~~v 172 (346)
.-+.+.|+. .|+-++| + .++.|-.. .+++.-+.-|. ...|+.-+|-. + -.+....--+-+.
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--D--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred cceEecCCccccCcchhhccc--C--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 345666554 4777777 3 56665444 56655544332 34455545542 1 2344444557788
Q ss_pred EEEECCCCcE---EE-EEecCCCceeEE--eeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC
Q 019091 173 FIYDQNNLNK---LE-EFTHQMKDGWGL--ATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (346)
Q Consensus 173 ~V~D~~tl~~---i~-ti~~~~peGwGL--t~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~ 245 (346)
.|+|.++... .. -|.+. +|=+.+ ..++..+|+|=| ++.+.++|...++ +...+.+++.|-..|-.|++-+
T Consensus 176 TiWdie~~~~~~vkTQLIAHD-KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--HSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHD-KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--HSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred EEEEEeeccccceeeEEEecC-cceeEEEeccCccceEEEecCCCcEEEEEecccc--cceEEecCCCCCCcceeeccCc
Confidence 8999887622 22 24554 444444 446688999986 7899999998654 3444555556555565676664
Q ss_pred C--EEEEEec-CCCeEEEEeCCCCe-EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 246 G--EVWANVW-QTDCIARISHEDGV-VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 246 G--~LyaNv~-~sn~I~vID~~TG~-Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
. +..|+.- .++.|.++|...=. .++++ +. + ....|||||.|....-..|+...-...-=+|.
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tpva~L-----~~----H----~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTPVARL-----RN----H----QASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcceehh-----hc----C----cccccceEecCCCCceeeecCCcceEEEEecc
Confidence 3 3445553 37789999976532 22222 21 1 23579999999988777777666544444443
No 294
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=88.50 E-value=2.9 Score=45.71 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=80.2
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe--eEEEEEEeCCEEEEEE-eeCCEEEEEECCCCcEEEE
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY--FGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~--FgeGit~~g~~LY~lt-w~~~~v~V~D~~tl~~i~t 185 (346)
-++++|+-.+.++.+ -+-.|++||..+||..+..+=.... --.-+.++..-+|++| ..+..+.+||--+++.+++
T Consensus 601 Dm~Vdp~~k~v~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EeeeCCCcceEEEEe--cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 456666555555655 3458999999999998887543211 1233556778899886 6677899999999999998
Q ss_pred Eec--CCCceeEEeeCCCEEEEECCCCeEEEEeC
Q 019091 186 FTH--QMKDGWGLATDGKVLFGSDGSSMLYQIDP 217 (346)
Q Consensus 186 i~~--~~peGwGLt~Dg~~LyvSdGs~~l~vIDp 217 (346)
..- +.-.|+-+++|=++|+-.-|++-|+|+-.
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 753 23467789999999999889999999984
No 295
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.31 E-value=1.3 Score=36.09 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCEEEEEECCCCcEEEEEe-cCCCceeEEeeCCCEEEEEC-CCCeEEEE
Q 019091 169 QKTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQI 215 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~-~~~peGwGLt~Dg~~LyvSd-Gs~~l~vI 215 (346)
+++++.||++|.+..--.. ...|.|.+|++|++.|++++ +..+|+-.
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEE
Confidence 5788999999986533332 12479999999999999998 56666544
No 296
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=88.23 E-value=30 Score=34.59 Aligned_cols=208 Identities=12% Similarity=0.119 Sum_probs=112.2
Q ss_pred cCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEE---EEEeeCCEEEEEE
Q 019091 101 HDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLF---QVTWLQKTGFIYD 176 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY---~ltw~~~~v~V~D 176 (346)
|+...+ -..++.||. +|.+ + -+.++..||+++|++. ++.+..++. .-+...++-+| +..-.+.++-..|
T Consensus 71 ~~~PvL--~v~WsddgskVf~g-~--~Dk~~k~wDL~S~Q~~-~v~~Hd~pv-kt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 71 HDGPVL--DVCWSDDGSKVFSG-G--CDKQAKLWDLASGQVS-QVAAHDAPV-KTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred cCCCeE--EEEEccCCceEEee-c--cCCceEEEEccCCCee-eeeecccce-eEEEEecCCCcceeEecccccceeecc
Confidence 544443 667777885 5544 4 3569999999999653 444433332 22444444344 3334468899999
Q ss_pred CCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE-EEEEEec--cCCeeeeeceeeEee--CCEEEEE
Q 019091 177 QNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVR--YKGREVRNLNELEFI--KGEVWAN 251 (346)
Q Consensus 177 ~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv-i~~I~V~--~~G~pv~~lNELE~~--~G~LyaN 251 (346)
+..-..+.++..+ .--++++--...+.|+-+...|.+++.++... .++++-. ..-+-+. -+. +|++...
T Consensus 144 ~R~~~pv~t~~LP-eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va-----~f~d~~~~alGs 217 (347)
T KOG0647|consen 144 TRSSNPVATLQLP-ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA-----CFQDKDGFALGS 217 (347)
T ss_pred cCCCCeeeeeecc-ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE-----EEecCCceEeee
Confidence 9999999999875 23344444456678888888899998865332 2222211 0001110 011 2333344
Q ss_pred ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC-----CCcEEEEEEeecccc
Q 019091 252 VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL-----WPKLYEINLREMKRE 325 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~-----Wp~l~ev~l~~~~~~ 325 (346)
+...=.|--||...-+.--++... +.. ....++.=-.|.|||.|..++|--.|-. |++=-+-||.....+
T Consensus 218 iEGrv~iq~id~~~~~~nFtFkCH--R~~--~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNPKDNFTFKCH--RST--NSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred ecceEEEEecCCCCccCceeEEEe--ccC--CCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 433333444555433322222110 000 0000112246999999988877776653 666666666544333
No 297
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.06 E-value=33 Score=34.97 Aligned_cols=181 Identities=10% Similarity=0.042 Sum_probs=116.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCC---cEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNL---NKL 183 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl---~~i 183 (346)
+-..|-|.|.-..|++ -+.+|..||.+||--+...+-.++ +-.=+.+.+ ++|+.+--+++++.|.=.++. .++
T Consensus 197 S~V~f~P~gd~ilS~s--rD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 197 SSVFFLPLGDHILSCS--RDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL 273 (406)
T ss_pred eeEEEEecCCeeeecc--cccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh
Confidence 5566777776667888 456999999999987777655443 444455544 567777777787777666666 222
Q ss_pred EEEecCCCceeEEee---------------CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE
Q 019091 184 EEFTHQMKDGWGLAT---------------DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE 247 (346)
Q Consensus 184 ~ti~~~~peGwGLt~---------------Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~ 247 (346)
....++ -|-....| .++.|...-.+.+|-++|..|...+=++.-.+++. -++.+. +|+
T Consensus 274 R~hEh~-vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV-----r~~af~p~Gk 347 (406)
T KOG0295|consen 274 REHEHP-VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV-----RGVAFSPGGK 347 (406)
T ss_pred hccccc-eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee-----eeeEEcCCCe
Confidence 222221 12222211 13466665678999999999998887665544321 134454 466
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC
Q 019091 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW 311 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W 311 (346)
-.+.+-.+.++-+=|.+++++..+++... -+-+-++|+.+ .-..|||...
T Consensus 348 yi~ScaDDktlrvwdl~~~~cmk~~~ah~-------------hfvt~lDfh~~-~p~VvTGsVd 397 (406)
T KOG0295|consen 348 YILSCADDKTLRVWDLKNLQCMKTLEAHE-------------HFVTSLDFHKT-APYVVTGSVD 397 (406)
T ss_pred EEEEEecCCcEEEEEeccceeeeccCCCc-------------ceeEEEecCCC-CceEEecccc
Confidence 66777778899999999999998885422 24566777643 3355676543
No 298
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=88.05 E-value=1.3 Score=29.91 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=23.6
Q ss_pred cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019091 139 KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 139 kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
+++=+.+++. ++-.+.++.+++||+.++ ++.++.+|++|
T Consensus 2 ~~~W~~~~~~-~~~~~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 2 KVLWSYDTGG-PIWSSPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp -EEEEEE-SS----S--EECTSEEEEE-T-TSEEEEEETT-
T ss_pred ceeEEEECCC-CcCcCCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 3333445554 334557889999999998 79999999875
No 299
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=87.94 E-value=7.4 Score=37.50 Aligned_cols=134 Identities=14% Similarity=0.187 Sum_probs=80.8
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE------------EEEEEeCCEEEEE--EeeC--CEE
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV--TWLQ--KTG 172 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg------------eGit~~g~~LY~l--tw~~--~~v 172 (346)
|-.+- +|.+|---. +...|.++|+.++.+.....++..-+. .-++.+.+-||+. |..+ +.+
T Consensus 72 g~VVy-nGs~yynk~--~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv 148 (249)
T KOG3545|consen 72 GHVVY-NGSLYYNKA--GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIV 148 (249)
T ss_pred ceEEE-cceEEeecc--CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEE
Confidence 44444 466665543 667899999999988777766532111 2244555667765 3333 233
Q ss_pred -EEEECCCCcEEEEEecC-----CCceeEEeeCCCEEEEECC----CCeE-EEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019091 173 -FIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG----SSML-YQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 173 -~V~D~~tl~~i~ti~~~-----~peGwGLt~Dg~~LyvSdG----s~~l-~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
..+|+.|++..++..+. ..+++-+| ..||+-+. +..| +..|+.+.+. .++.+.- .++..+++.+
T Consensus 149 ~skLdp~tl~~e~tW~T~~~k~~~~~aF~iC---GvLY~v~S~~~~~~~i~yaydt~~~~~-~~~~ipf-~N~y~~~~~i 223 (249)
T KOG3545|consen 149 LSKLDPETLEVERTWNTTLPKRSAGNAFMIC---GVLYVVHSYNCTHTQISYAYDTTTGTQ-ERIDLPF-PNPYSYATMI 223 (249)
T ss_pred eeccCHHHhheeeeeccccCCCCcCceEEEe---eeeEEEeccccCCceEEEEEEcCCCce-ecccccc-cchhhhhhcc
Confidence 56899999999988642 35777777 67888552 4455 7889888776 3444421 1233333333
Q ss_pred Eee--CCEEEE
Q 019091 242 EFI--KGEVWA 250 (346)
Q Consensus 242 E~~--~G~Lya 250 (346)
.|- |.+|||
T Consensus 224 dYNP~D~~LY~ 234 (249)
T KOG3545|consen 224 DYNPRDRRLYA 234 (249)
T ss_pred CCCcccceeeE
Confidence 332 567886
No 300
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=87.82 E-value=15 Score=39.97 Aligned_cols=204 Identities=14% Similarity=0.146 Sum_probs=115.0
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEE-EeCCEEEEEEeeCCEEE
Q 019091 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLT-LLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit-~~g~~LY~ltw~~~~v~ 173 (346)
.++++-- .....+||++-+++. |.|++ .+..|+.||. +|+++.+..= ...|-=-++ ..++.+.+++-.++++-
T Consensus 171 ~l~tf~g-HtD~VRgL~vl~~~~-flScs--NDg~Ir~w~~-~ge~l~~~~g-htn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 171 LLKTFSG-HTDCVRGLAVLDDSH-FLSCS--NDGSIRLWDL-DGEVLLEMHG-HTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred hhhhhcc-chhheeeeEEecCCC-eEeec--CCceEEEEec-cCceeeeeec-cceEEEEEEecCCCCeEEEecCCceEE
Confidence 4445542 344568999986544 44666 5669999999 6666655432 223333355 46788999999999999
Q ss_pred EEECCCCcEEEEEecCCCceeEEee-CCCEEEEECCCCeEEEEeCCCC-------------cEEE-----EEEeccCCee
Q 019091 174 IYDQNNLNKLEEFTHQMKDGWGLAT-DGKVLFGSDGSSMLYQIDPQTL-------------KVIR-----KDIVRYKGRE 234 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~~peGwGLt~-Dg~~LyvSdGs~~l~vIDp~T~-------------kvi~-----~I~V~~~G~p 234 (346)
+.+.. +..+.|.++..-=|..+. +...+++.-.++.|+|+-...- ++.. +..+|+ ..
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As~evl~afd~~v~s~~~~kt~~~g~--v~ 320 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEVVSQISSKTEEVGG--VK 320 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccCCHHHHHHHHHHHHhhhhhhhhhhCc--cc
Confidence 99977 777788877557788764 2444555333455555543211 1112 223321 00
Q ss_pred eeeceeeEeeCCEEEEEec--CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019091 235 VRNLNELEFIKGEVWANVW--QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 235 v~~lNELE~~~G~LyaNv~--~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
.. +| .+-+.+.... ...+..|-|.++.+...|..= .-+ .-+.-+..+.|.....++...-||.++
T Consensus 321 ~~---~l--Pg~e~L~spGt~dGq~~~Vr~~~~v~ayqws~~-e~r-------~ikdvig~~~~~~~~s~K~l~EGKeYD 387 (745)
T KOG0301|consen 321 KD---DL--PGLEILKSPGTRDGQTKVVRDGENVEAYQWSNG-EWR-------WIKDVIGEVVAAQGNSGKVLHEGKEYD 387 (745)
T ss_pred cc---cC--CchhhhcCCCCCCCcEEEEEcCCcceeEEeecc-cce-------eeccccccccccCCCCcceeecccccc
Confidence 00 00 0011222111 234566667777776666521 000 001112344555555557788899999
Q ss_pred cEEEEEEee
Q 019091 313 KLYEINLRE 321 (346)
Q Consensus 313 ~l~ev~l~~ 321 (346)
++|.|++-.
T Consensus 388 yvF~VDi~d 396 (745)
T KOG0301|consen 388 YVFDVDIGD 396 (745)
T ss_pred eEEEEEccC
Confidence 999999953
No 301
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=87.63 E-value=44 Score=37.39 Aligned_cols=190 Identities=18% Similarity=0.187 Sum_probs=107.3
Q ss_pred eeEEEec-CCEEEEEcCCCCCCeEEEEECC-CCcEEEEeccCC--CeeEEEEEEe------C-CEEEEEE-eeCCEEEEE
Q 019091 108 QGLLYAE-NDTLFESTGLYGRSSVRRVALE-TGKVEAINQMEG--SYFGEGLTLL------G-EKLFQVT-WLQKTGFIY 175 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~s~V~~iDl~-Tgkv~~~~~l~~--~~FgeGit~~------g-~~LY~lt-w~~~~v~V~ 175 (346)
+.|++.- .++-|+..| +.|.++... .+.+.....+.. .+-|+.+++. + ..+..++ -..+.++.+
T Consensus 434 ~~Lavg~k~DrSfVvRg----~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~m 509 (794)
T PF08553_consen 434 SSLAVGYKNDRSFVVRG----SKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYKM 509 (794)
T ss_pred ceeEeeeccCceEEECC----CcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEEE
Confidence 4566652 456777765 478888766 444333322211 1123434442 1 2344444 467999999
Q ss_pred ECCCCcEEEEEecCCCce--eEEeeCCC-------EEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--
Q 019091 176 DQNNLNKLEEFTHQMKDG--WGLATDGK-------VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-- 244 (346)
Q Consensus 176 D~~tl~~i~ti~~~~peG--wGLt~Dg~-------~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-- 244 (346)
|.++++++.+..+. ..+ ..++|+.| .-|+.=..|.|+.|||.--. .+ .|...++....-|.+.+.
T Consensus 510 DLe~GKVV~eW~~~-~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k-~v~~~~k~Y~~~~~Fs~~aT 585 (794)
T PF08553_consen 510 DLERGKVVEEWKVH-DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NK-LVDSQSKQYSSKNNFSCFAT 585 (794)
T ss_pred ecCCCcEEEEeecC-CCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cc-eeeccccccccCCCceEEEe
Confidence 99999999999885 233 34666543 33443347899999997432 11 122222221222223222
Q ss_pred --CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCC-CceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 245 --KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNG-IDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 245 --~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~-~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+|+|-|..- ...|-..|. .|+- +.- ..|. ++-.-||-.+.||+-+..|.|..=-|+...+.
T Consensus 586 t~~G~iavgs~-~G~IRLyd~-~g~~-AKT------------~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~ 649 (794)
T PF08553_consen 586 TEDGYIAVGSN-KGDIRLYDR-LGKR-AKT------------ALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIK 649 (794)
T ss_pred cCCceEEEEeC-CCcEEeecc-cchh-hhh------------cCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeee
Confidence 577776653 566666662 2321 111 1222 55678999999999999998876544444443
No 302
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=87.48 E-value=28 Score=33.40 Aligned_cols=160 Identities=14% Similarity=0.173 Sum_probs=91.7
Q ss_pred eeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEE--e----ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019091 108 QGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAI--N----QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~--~----~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
.||.|-| +|+||-= + ..++|..+|+.||..... - .+....||.-+-+.-+||.+..- .+.=+.++++|+
T Consensus 30 ~GID~Rpa~G~LYgl-~--~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~-~GqNlR~npdtG 105 (236)
T PF14339_consen 30 VGIDFRPANGQLYGL-G--STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN-TGQNLRLNPDTG 105 (236)
T ss_pred EEEEeecCCCCEEEE-e--CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-CCcEEEECCCCC
Confidence 6999986 5689844 2 456999999999986444 2 34455677666666699998854 577788899988
Q ss_pred cEEE---EEecC---CCcee-----EEee--C------CCEEEEEC-CCCeEEEEe-CCCCcEEEEEEeccCCeeeeece
Q 019091 181 NKLE---EFTHQ---MKDGW-----GLAT--D------GKVLFGSD-GSSMLYQID-PQTLKVIRKDIVRYKGREVRNLN 239 (346)
Q Consensus 181 ~~i~---ti~~~---~peGw-----GLt~--D------g~~LyvSd-Gs~~l~vID-p~T~kvi~~I~V~~~G~pv~~lN 239 (346)
.+.. .+.+. +.+|. +.++ . ...||.=| ..+.|+... |.++++. .|+.-|..+...+
T Consensus 106 av~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~GtL~---~vG~LGvd~~~~~ 182 (236)
T PF14339_consen 106 AVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDGTLN---TVGPLGVDAAGDA 182 (236)
T ss_pred CceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCCcEE---eeeccccccCccc
Confidence 8431 23331 11121 1111 1 23566655 355555553 3444332 2222222222223
Q ss_pred eeEeeC-----CEEEEEec-CCCeEEEEeCCCCeEEEEEEC
Q 019091 240 ELEFIK-----GEVWANVW-QTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 240 ELE~~~-----G~LyaNv~-~sn~I~vID~~TG~Vv~~I~l 274 (346)
.++..+ ...|+..- ....++.||..||+....-.+
T Consensus 183 gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG~at~~g~i 223 (236)
T PF14339_consen 183 GFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTGAATLVGQI 223 (236)
T ss_pred ceeeecCCCcceEEEEEecCCCcEEEEEECCCcccEEeeec
Confidence 344442 24665542 237899999999997544433
No 303
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.43 E-value=3.6 Score=43.97 Aligned_cols=70 Identities=11% Similarity=0.080 Sum_probs=48.2
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
+..+.+-|.++.+|.||++|. ..+.+||..+||..+....+- .... =+.-.+++||+.||+ =++++++..
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~----dGL~~fd~~~gkalql~s~~~dk~I~a-l~~d~qg~LWVGTdq--Gv~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTP----DGLSYFDAGRGKALQLASPPLDKAINA-LIADVQGRLWVGTDQ--GVYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcEEEecC----CcceEEccccceEEEcCCCcchhhHHH-HHHHhcCcEEEEecc--ceEEEchhh
Confidence 345668999998899999987 379999999999877654332 1111 011135789999876 356666655
No 304
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=87.38 E-value=1.8 Score=35.06 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=31.9
Q ss_pred EEEEEECCCCcEEEE-EecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCC
Q 019091 171 TGFIYDQNNLNKLEE-FTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ 218 (346)
Q Consensus 171 ~v~V~D~~tl~~i~t-i~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~ 218 (346)
.|.-||.++.+.+.+ +. .|.|.++++|++.|||++ ....|++..-+
T Consensus 37 ~Vvyyd~~~~~~va~g~~--~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 37 NVVYYDGKEVKVVASGFS--FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eEEEEeCCEeEEeeccCC--CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 344467655443332 22 479999999999999999 47888887643
No 305
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=87.37 E-value=14 Score=40.90 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=84.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
-+|.|+.||..+.|.|.. .-+.+|.++|++ .+-+ .++... +++... .+.+|.+--.+|.+.++...+++...+
T Consensus 255 ~~L~fS~~G~~LlSGG~E--~VLv~Wq~~T~~-kqfLPRLgs~I--~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGRE--GVLVLWQLETGK-KQFLPRLGSPI--LHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred ceeEEecCCceEeecccc--eEEEEEeecCCC-cccccccCCee--EEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 599999999877788854 489999999998 2222 355544 334443 456888888899999999999998888
Q ss_pred EecC-------------CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEecc
Q 019091 186 FTHQ-------------MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 186 i~~~-------------~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~ 230 (346)
|..- .+-|..++|--+.+.. || ...|.+.|+-|-+.+.++.|.+
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl-n~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL-NGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceee-cCCCceEEEEeccccceeeeEEEEe
Confidence 7632 1123344553344444 65 7899999999999888888865
No 306
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=87.30 E-value=18 Score=37.17 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=36.7
Q ss_pred eeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019091 240 ELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 240 ELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
+|.+. ++...+.--.+|.+...|..+|.+++..+= .....+|+||||.++
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d-------------h~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD-------------HEHYVQGVAWDPLNQ 178 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccc-------------cccccceeecchhhh
Confidence 35555 444445555699999999999999888743 134679999999876
No 307
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.85 E-value=7.6 Score=43.59 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=84.1
Q ss_pred EEEEE-ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-EeeCCEE
Q 019091 95 VVNEF-PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-TWLQKTG 172 (346)
Q Consensus 95 Vv~t~-phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-tw~~~~v 172 (346)
.++++ .||..- +|+.|+|.+-||+|.| ++=.|.+|+.++.+.+.++. +.-.|-.-+..+...=|++ .-.++++
T Consensus 43 li~rFdeHdGpV--Rgv~FH~~qplFVSGG--DDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 43 LIDRFDEHDGPV--RGVDFHPTQPLFVSGG--DDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTI 117 (1202)
T ss_pred HHhhhhccCCcc--ceeeecCCCCeEEecC--CccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeE
Confidence 34555 477555 8999999888999999 77799999999998766652 2222344455555555655 3456778
Q ss_pred EEEECCCCcEEEEEecCCCceeEEee---CCCEEEEECC-CCeEEEEeCCCCc
Q 019091 173 FIYDQNNLNKLEEFTHQMKDGWGLAT---DGKVLFGSDG-SSMLYQIDPQTLK 221 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~peGwGLt~---Dg~~LyvSdG-s~~l~vIDp~T~k 221 (346)
-|.+-++++.++...- -..+.++. ..+-|+||-. +.+|.|+|-.-++
T Consensus 118 rIWNwqsr~~iavltG--HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTG--HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred EEEeccCCceEEEEec--CceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence 8888888888887763 25566664 3467788764 8899999975544
No 308
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.70 E-value=21 Score=35.75 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEE--EEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC----
Q 019091 117 TLFESTGLYGRSSVRRVALETGKVE--AINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---- 189 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~--~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---- 189 (346)
.+++--|. .-.+|++.|+..-+.- ..++ -+...=-.+++..|..|-.+.-+.--+-+||+.+++++.++.-|
T Consensus 149 ~~LafPg~-k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A 227 (346)
T KOG2111|consen 149 SLLAFPGF-KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRA 227 (346)
T ss_pred eEEEcCCC-ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchh
Confidence 34444443 3468999998876552 1121 12233345566677777777777777889999999999999744
Q ss_pred CCceeEEeeCCCEEEEECCCCeEEEEeCC
Q 019091 190 MKDGWGLATDGKVLFGSDGSSMLYQIDPQ 218 (346)
Q Consensus 190 ~peGwGLt~Dg~~LyvSdGs~~l~vIDp~ 218 (346)
.-+-.+++||..+|-+|-.-.+||++-..
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 12556789999999997767788888644
No 309
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=86.44 E-value=13 Score=41.08 Aligned_cols=196 Identities=13% Similarity=0.162 Sum_probs=110.6
Q ss_pred CCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE------eCCEEEEEEeeCCEEEEE
Q 019091 102 DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL------LGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 102 d~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~------~g~~LY~ltw~~~~v~V~ 175 (346)
|++.-.+.|.++|||+-+-| |..+ ..|+++|+..-+..-.+.-.+ .|-+.+ .+++|....-++.-+.||
T Consensus 457 d~r~G~R~~~vSp~gqhLAs-GDr~-GnlrVy~Lq~l~~~~~~eAHe---sEilcLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLAS-GDRG-GNLRVYDLQELEYTCFMEAHE---SEILCLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred CcccceEEEEECCCcceecc-cCcc-CceEEEEehhhhhhhheeccc---ceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence 34444488899998876555 4333 489999998755433332211 121222 123455555555666666
Q ss_pred ECC-CCcEEEEE----------ecC-----------------------------------------CCceeEEeeCCCEE
Q 019091 176 DQN-NLNKLEEF----------THQ-----------------------------------------MKDGWGLATDGKVL 203 (346)
Q Consensus 176 D~~-tl~~i~ti----------~~~-----------------------------------------~peGwGLt~Dg~~L 203 (346)
|.+ ...++.++ +.. .-+-+.+.|.-+.+
T Consensus 532 Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 532 DVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred ecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 643 11111111 100 00112233333444
Q ss_pred EEECCCCeEEEEeCCCCcEEEEEEecc--CCeeeeeceeeEeeCCEEEE-EecCCCeEEEEeCCCCeEEEEEECCchhhh
Q 019091 204 FGSDGSSMLYQIDPQTLKVIRKDIVRY--KGREVRNLNELEFIKGEVWA-NVWQTDCIARISHEDGVVLGWVLLPNLRER 280 (346)
Q Consensus 204 yvSdGs~~l~vIDp~T~kvi~~I~V~~--~G~pv~~lNELE~~~G~Lya-Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~ 280 (346)
.+.-.+..|.++|.+++|.++..+=.. +|.++. +-.+..-+|+ +.....++.++|--+|+++++.-=
T Consensus 612 ~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK----v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G------ 681 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK----VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG------ 681 (1080)
T ss_pred EEEecccceEEEeccccceeeeecccccCCCceEE----EEECCCccEEEEeecCCceEEEEeccchhhhhhcC------
Confidence 444457889999999999998887632 466665 3344445664 444566799999999999887611
Q ss_pred hhhccCCCCceeeEEEEeCCCCEEE-EecCCCCcEEEEEE
Q 019091 281 LVAAGYNGIDVLNGIAWDSNRNRIF-VTGKLWPKLYEINL 319 (346)
Q Consensus 281 ~~~~~~~~~~vlNGIA~d~~~~~Lf-VTGK~Wp~l~ev~l 319 (346)
+ ....-|+-|.+|=+.|. |+|..==+++++-+
T Consensus 682 ---H----sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 682 ---H----SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ---c----chheeeeeecccchhheeecCCceEEEEECch
Confidence 0 12346888888877655 66555445555433
No 310
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.41 E-value=45 Score=34.73 Aligned_cols=177 Identities=13% Similarity=0.071 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCC---cEEEEEecCC
Q 019091 117 TLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNL---NKLEEFTHQM 190 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl---~~i~ti~~~~ 190 (346)
.++.|++ -+.+|..||+++|+-...++. ++.. ..+..++ ..+...--.+++|.++|-... ...-+|.-+
T Consensus 257 nVLaSgs--aD~TV~lWD~~~g~p~~s~~~~~k~V--q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~- 331 (463)
T KOG0270|consen 257 NVLASGS--ADKTVKLWDVDTGKPKSSITHHGKKV--QTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE- 331 (463)
T ss_pred eeEEecC--CCceEEEEEcCCCCcceehhhcCCce--eEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc-
Confidence 4777877 678999999999998777763 3322 3344443 334444566788999997632 111122211
Q ss_pred CceeEEeeCCC-EEEEECCCCeEEEEeCCCC-cEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeE
Q 019091 191 KDGWGLATDGK-VLFGSDGSSMLYQIDPQTL-KVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVV 268 (346)
Q Consensus 191 peGwGLt~Dg~-~LyvSdGs~~l~vIDp~T~-kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~V 268 (346)
-|=....+-.. ..+++-.+.+|+-+|.+.. +.+-++...++ ++. -|=+|...-+.++- ..+-++
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~IS----------gl~~n~~~p~~l~t--~s~d~~ 397 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EIS----------GLSVNIQTPGLLST--ASTDKV 397 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC--Ccc----------eEEecCCCCcceee--ccccce
Confidence 12222333333 4455555789999998775 56666666543 332 22333333333322 233445
Q ss_pred EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019091 269 LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 269 v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
+.-++++.-.+.......-....+...|.+|+...+|+.|+--+
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccc
Confidence 55555533222211100011335888999999999999998877
No 311
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=86.33 E-value=66 Score=36.58 Aligned_cols=173 Identities=15% Similarity=0.220 Sum_probs=102.8
Q ss_pred EEEEEEe--CCEEEEEEeeCCEEEEE------ECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE
Q 019091 152 GEGLTLL--GEKLFQVTWLQKTGFIY------DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (346)
Q Consensus 152 geGit~~--g~~LY~ltw~~~~v~V~------D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi 223 (346)
-.++... .+.|+++. .++.++++ +....+.++.++.|. ....-+||++.|.+..|.++|.+++ .+|+++
T Consensus 78 ivs~~yl~d~~~l~~~~-~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI-~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i 154 (928)
T PF04762_consen 78 IVSFQYLADSESLCIAL-ASGDIILVREDPDPDEDEIEIVGSVDSGI-LAASWSPDEELLALVTGEGNLLLMT-RDFDPI 154 (928)
T ss_pred EEEEEeccCCCcEEEEE-CCceEEEEEccCCCCCceeEEEEEEcCcE-EEEEECCCcCEEEEEeCCCEEEEEe-ccceEE
Confidence 3445543 34555554 45777777 455678899999873 6667899999999999999999985 678877
Q ss_pred EEEEecc-------------C----------Ceeee------ec-----eeeEeeCCEEEEEecCCC----eEEEEeCCC
Q 019091 224 RKDIVRY-------------K----------GREVR------NL-----NELEFIKGEVWANVWQTD----CIARISHED 265 (346)
Q Consensus 224 ~~I~V~~-------------~----------G~pv~------~l-----NELE~~~G~LyaNv~~sn----~I~vID~~T 265 (346)
..+++.. + |+... .+ ..+..+++.+.+. |..| -|+-+++.+
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~IS-WRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRIS-WRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEE-ECCCCcEEEEEEEEcCC
Confidence 6665532 1 11100 00 0122222333322 3322 145667777
Q ss_pred C--eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccccccCCCch
Q 019091 266 G--VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKDGFNV 332 (346)
Q Consensus 266 G--~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~~~~~~~~ 332 (346)
| +++..++=. +.+....-+...--..+||.|.|+.+-.+.+ -+.-..|.+-+.|.-+-..|++
T Consensus 234 ~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfErNGLrhgeF~l 298 (928)
T PF04762_consen 234 GSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFERNGLRHGEFTL 298 (928)
T ss_pred CceeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEecCCcEeeeEec
Confidence 7 666666431 1222111122223456899999998888876 3444888887777666666655
No 312
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.32 E-value=29 Score=39.23 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=97.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCC---CcEE---------EEe----ccCCCeeEE--EEEEe-CCEEEEEEee
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALET---GKVE---------AIN----QMEGSYFGE--GLTLL-GEKLFQVTWL 168 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~T---gkv~---------~~~----~l~~~~Fge--Git~~-g~~LY~ltw~ 168 (346)
--+-|++||..+-+.+ ++.-|.+|+.+. +.+- .+. .+-.+. ++ -+... ++.+.++--.
T Consensus 73 ~CVR~S~dG~~lAsGS--DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGS--DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred eEEEECCCCCeEeecc--CcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-CccceeccCCCccEEEEecc
Confidence 4667899998776766 566778888773 1100 000 000000 01 01111 3567777888
Q ss_pred CCEEEEEECCCCcEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC---CeeeeeceeeEe
Q 019091 169 QKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK---GREVRNLNELEF 243 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~---G~pv~~lNELE~ 243 (346)
++.|.++|..||+.++++.- + ..-|..++|-|+++-.--++.+|-|+++.++.+.++|.=.-+ +.++ .--|.|
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~--f~RlSW 227 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF--FLRLSW 227 (942)
T ss_pred cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce--eeeccc
Confidence 99999999999999999874 2 346666667788665534577999999999999888865321 1121 112333
Q ss_pred e-CCE-EEE---EecCCCeEEEEeCCCCeEE
Q 019091 244 I-KGE-VWA---NVWQTDCIARISHEDGVVL 269 (346)
Q Consensus 244 ~-~G~-Lya---Nv~~sn~I~vID~~TG~Vv 269 (346)
- ||. |-+ -+....++.+|+-.+-++-
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~ 258 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVD 258 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCCceee
Confidence 3 564 432 2234678999999888854
No 313
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=86.08 E-value=0.69 Score=31.62 Aligned_cols=25 Identities=52% Similarity=0.465 Sum_probs=20.4
Q ss_pred CceeeEEEEeCCCCEEEEecCCCCcE
Q 019091 289 IDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 289 ~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
.+.++|||+|++++ +||||--+..-
T Consensus 12 ~~~~~~IavD~~GN-iYv~G~T~~~~ 36 (38)
T PF06739_consen 12 QDYGNGIAVDSNGN-IYVTGYTNGND 36 (38)
T ss_pred ceeEEEEEECCCCC-EEEEEeecCCC
Confidence 35799999999887 99999776543
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.72 E-value=26 Score=36.24 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=54.3
Q ss_pred CCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECC
Q 019091 102 DPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 102 d~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~ 178 (346)
....|..+|+|+|..+ |.+...+ ...|.++|+.|..+......+..++---..++. +.||... .++.|+|||..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl--~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl-~nG~VlvyD~R 266 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASL--GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL-QNGMVLVYDMR 266 (463)
T ss_pred ccchhhhhhccCccccceeeeecc--CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec-cCceEEEEEcc
Confidence 3567889999998765 5555443 259999999999999999888777654444444 4566554 57899999964
No 315
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=85.42 E-value=32 Score=35.53 Aligned_cols=217 Identities=14% Similarity=0.099 Sum_probs=128.0
Q ss_pred eeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEE--------eccCCCee-EEEEEEeC-
Q 019091 90 IYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI--------NQMEGSYF-GEGLTLLG- 159 (346)
Q Consensus 90 ~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~--------~~l~~~~F-geGit~~g- 159 (346)
-..+++..+|.|+...+ =+-+-|.+...++++.. ...|.+||..+-.-... +.|-..-- |.|+....
T Consensus 112 ~~~v~i~~~i~h~gEVn--RaRymPQnp~iVAt~t~-~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~ 188 (422)
T KOG0264|consen 112 SGKVEISQKINHDGEVN--RARYMPQNPNIVATKTS-SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ 188 (422)
T ss_pred ccceEEEEeccCCccch--hhhhCCCCCcEEEecCC-CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc
Confidence 34689999999987764 33444656666666643 46899999765321111 11111000 33333321
Q ss_pred CEEEEE-EeeCCEEEEEECCCCcEE-------EEEec-C-CCceeEEeeCCCEEEEECC-CCeEEEEeCCC--CcEEEEE
Q 019091 160 EKLFQV-TWLQKTGFIYDQNNLNKL-------EEFTH-Q-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQT--LKVIRKD 226 (346)
Q Consensus 160 ~~LY~l-tw~~~~v~V~D~~tl~~i-------~ti~~-~-~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T--~kvi~~I 226 (346)
...+.+ .-.++.+.+.|.+..... .-|.. + .-+-..+.+-.+.||.|=| +..|.+.|+.+ .+..+.+
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 233333 456788888887644331 11211 1 1233344555677888765 77999999995 3433333
Q ss_pred EeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019091 227 IVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 227 ~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
.. ++.++.-+ +..+.++.|.|+--.+++|..-|+.+.+- .-..+.+ . .+-...+-|+|....++.
T Consensus 269 ~a--h~~~vn~~-~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~----------H-~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 269 KA--HSAEVNCV-AFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEG----------H-EDEVFQVEWSPHNETVLA 333 (422)
T ss_pred cc--cCCceeEE-EeCCCCCceEEeccCCCcEEEeechhccc-CceeccC----------C-CcceEEEEeCCCCCceeE
Confidence 33 23343211 23344789999998889999999998764 1111111 1 223456999999999999
Q ss_pred ecCCCCcEEEEEEeeccc
Q 019091 307 TGKLWPKLYEINLREMKR 324 (346)
Q Consensus 307 TGK~Wp~l~ev~l~~~~~ 324 (346)
+..-|..+--=+|..+..
T Consensus 334 SSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred ecccCCcEEEEecccccc
Confidence 998999888777765443
No 316
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=85.20 E-value=2.7 Score=26.56 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=20.3
Q ss_pred EEEEEE-eCCEEEEEEeeCCEEEEE
Q 019091 152 GEGLTL-LGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 152 geGit~-~g~~LY~ltw~~~~v~V~ 175 (346)
+.|+++ .++.||+++..+++|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 567777 568999999999999886
No 317
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=84.92 E-value=20 Score=39.97 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=81.0
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-------CCEEEEEEeeCCEEEEEECCCC--c
Q 019091 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-------GEKLFQVTWLQKTGFIYDQNNL--N 181 (346)
Q Consensus 111 ~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-------g~~LY~ltw~~~~v~V~D~~tl--~ 181 (346)
....+..++.-++. ..+.|+..|+.+|||+....+....=-..+++. +..-|+. ...+.+|.+|+.-- +
T Consensus 488 L~~~d~~mil~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflG-ls~n~lfriDpR~~~~k 565 (794)
T PF08553_consen 488 LHDQDRNMILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLG-LSDNSLFRIDPRLSGNK 565 (794)
T ss_pred hhccccceEeecCC-CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEE-ECCCceEEeccCCCCCc
Confidence 33344456666553 568999999999999999987653211223332 2233333 23688999998732 2
Q ss_pred EEE----EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecCC
Q 019091 182 KLE----EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQT 255 (346)
Q Consensus 182 ~i~----ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~s 255 (346)
++. .+.....--.+-|...+++.|....+.|..+|. .++. ++.....-|.|+.. +... || .|.|++ .
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~-AKT~lp~lG~pI~~---iDvt~DGkwilaTc--~ 638 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKR-AKTALPGLGDPIIG---IDVTADGKWILATC--K 638 (794)
T ss_pred eeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchh-hhhcCCCCCCCeeE---EEecCCCcEEEEee--c
Confidence 221 222111111122333445555555667777784 3322 33334333667764 3322 55 688998 7
Q ss_pred CeEEEEeCC
Q 019091 256 DCIARISHE 264 (346)
Q Consensus 256 n~I~vID~~ 264 (346)
..+..||+.
T Consensus 639 tyLlLi~t~ 647 (794)
T PF08553_consen 639 TYLLLIDTL 647 (794)
T ss_pred ceEEEEEEe
Confidence 889999974
No 318
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=84.91 E-value=42 Score=33.10 Aligned_cols=178 Identities=11% Similarity=0.107 Sum_probs=104.4
Q ss_pred eEEEecC-CEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCC----CeeEEEEEEeCCEEEEEEeeCCEEEEEECC--CC
Q 019091 109 GLLYAEN-DTLFESTGLYGRSSVRRVALETGK-VEAINQMEG----SYFGEGLTLLGEKLFQVTWLQKTGFIYDQN--NL 180 (346)
Q Consensus 109 GL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~----~~FgeGit~~g~~LY~ltw~~~~v~V~D~~--tl 180 (346)
.+++.|. |.++-|+| ++..|+++++..+. ..-+..++. ..--..-.+.|+ +..+.-.+.++.++-.. ++
T Consensus 19 ~~awhp~~g~ilAscg--~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCG--TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred EEEeccCCceEEEeec--CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCce
Confidence 8888886 77888888 78899999998533 333323321 111222233444 44444556666666544 67
Q ss_pred cEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCC-EEEEEecCCC
Q 019091 181 NKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKG-EVWANVWQTD 256 (346)
Q Consensus 181 ~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G-~LyaNv~~sn 256 (346)
+.+++++- + ---..+.+.+|..|-+.-.+..|.+....-.....-+.|-. +-+.+.+ .-+..- .|.+..-++|
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~---V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH---VIWHPTEDLLFSCSYDN 172 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE---EEEcCCcceeEEeccCC
Confidence 88888863 2 11355677888888887777777777655434433444422 1111111 112221 5777777899
Q ss_pred eEEEEeCC---CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019091 257 CIARISHE---DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 257 ~I~vID~~---TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
+|-+.+-. +-+.+.+|+-. .+..=++||++.|.||-
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~-------------~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGH-------------ENTVWSLAFDNIGSRLV 211 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCc-------------cceEEEEEecCCCceEE
Confidence 88777655 34566666331 12455788888886643
No 319
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=84.58 E-value=42 Score=32.82 Aligned_cols=117 Identities=14% Similarity=0.214 Sum_probs=76.3
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEE
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
..+.++|.. .++.. | |++.++.+|+++|++.+...=...| -+-+... +..++- --.++++-+.|.+|.+.+.
T Consensus 118 Nam~ldP~enSi~~A-g--GD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R~~~~qils-G~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 118 NAMWLDPSENSILFA-G--GDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGRNANGQILS-GAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred ceeEeccCCCcEEEe-c--CCeEEEEEEecCCEEEEEEcCCcce-eeeeeecccCcceee-cCCCccEEEEeccccceeE
Confidence 456666544 45544 4 6789999999999988877544333 2333332 234433 3467999999999999999
Q ss_pred EEecC-----CCceeE-----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019091 185 EFTHQ-----MKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 185 ti~~~-----~peGwG-----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
.|... ..-.|| |+-|.+||.- -|...+..+.....+-+..+++..
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~edWlvC-GgGp~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVNEDWLVC-GGGPKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred EeccccChhhcCcccCceeEEEeccCceEEe-cCCCceeEEeccCCCceEEEeccc
Confidence 98642 111122 4555555543 346678888888888877777754
No 320
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=84.34 E-value=31 Score=31.08 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=99.1
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEE-eeCCEEEEEECCCCcE
Q 019091 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLNK 182 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~lt-w~~~~v~V~D~~tl~~ 182 (346)
.....+.+++++..+.+.+. .+..+..||..+++.+..... ............+. .+.++ ..++.+.++|..+.+.
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~ 233 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKL 233 (466)
T ss_pred ccEEEEEECCCCCEEEecCC-CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcE
Confidence 33468999998875555552 367999999999877777765 23333333332333 44444 6778888889887888
Q ss_pred EE-EEecCCCce-e-EEeeCCCEEEEECCCCeEEEEeCCCCcE-EEEEEeccCCeeeeeceeeEeeC-CEEEEEecCCCe
Q 019091 183 LE-EFTHQMKDG-W-GLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFIK-GEVWANVWQTDC 257 (346)
Q Consensus 183 i~-ti~~~~peG-w-GLt~Dg~~LyvSdGs~~l~vIDp~T~kv-i~~I~V~~~G~pv~~lNELE~~~-G~LyaNv~~sn~ 257 (346)
+. .+... ... . .+++++..+..+..+..+.++|...... .... ..+..+ ++.+++.. +..++.....+.
T Consensus 234 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~---v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 234 LRSTLSGH-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSS---VLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred EeeecCCC-CcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCcc---EEEEEECCCCCEEEEeeCCCc
Confidence 77 45432 222 3 4788886666555688999999887665 3333 112223 33444543 444433444455
Q ss_pred EEEEeCCCCeEEEEEE
Q 019091 258 IARISHEDGVVLGWVL 273 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~ 273 (346)
+..-|..++.......
T Consensus 308 ~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 308 VRLWDLETGKLLSSLT 323 (466)
T ss_pred EEEEEcCCCceEEEee
Confidence 5666888888777765
No 321
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.32 E-value=23 Score=38.94 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=29.5
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM 146 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l 146 (346)
.-++|.||| +|.+.+| +++.+||+..|...+.++-
T Consensus 16 ~d~afkPDGsqL~lAAg----~rlliyD~ndG~llqtLKg 51 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAG----SRLLVYDTSDGTLLQPLKG 51 (1081)
T ss_pred heeEECCCCceEEEecC----CEEEEEeCCCccccccccc
Confidence 578899999 6999988 5999999999988777654
No 322
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=84.05 E-value=3.5 Score=34.17 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=48.7
Q ss_pred eEEEEEEec-CCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEE
Q 019091 93 IQVVNEFPH-DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQ 164 (346)
Q Consensus 93 ~~Vv~t~ph-d~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ 164 (346)
|-+-+.=|| ...+-.+|+.-+.+|..++.+.+++ ..||++||+.+..-...-..|. +-+.++.+|+
T Consensus 37 yAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~----~~f~L~tG~~~~~~~~~l~~yp--vrv~~g~V~V 103 (104)
T PF13806_consen 37 YAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHK----WRFDLRTGECLEDPDVSLRTYP--VRVEDGQVYV 103 (104)
T ss_dssp EEEESBETTTTSSCGCGSEEEECTTEEEEEETTTT----EEEETTTTEESSECSEBSBEEE--EEECTTEEEE
T ss_pred EEEeccCCccCCcccceeEEccCCCCEEEECCCCC----CeEECCCcCcCCCCCCcEEeEE--EEEECCEEEE
Confidence 344455589 6888889999988889999999988 6799999987665444445555 3445677765
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=83.80 E-value=4.8 Score=25.98 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=28.8
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEE
Q 019091 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVA 134 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iD 134 (346)
+.+.++.. .......+.+++++.++.+++ .+..|++||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~--~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGNFLASGS--SDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSSEEEEEE--TTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccccceeeC--CCCEEEEEC
Confidence 45667764 344458999999998888888 567999987
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.67 E-value=34 Score=35.48 Aligned_cols=82 Identities=12% Similarity=0.011 Sum_probs=37.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCC-ceeEEeeCCCEEEEE
Q 019091 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGS 206 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~p-eGwGLt~Dg~~LyvS 206 (346)
++|.++.--+++....++++- ..++|-. |..|.+.. ++.+..||.++.++++++++. + -..-.++||+.+-+.
T Consensus 89 ~~I~I~kn~~~~~~k~i~~~~--~~~~If~-G~LL~~~~--~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 89 STIKIYKNFKNEVVKSIKLPF--SVEKIFG-GNLLGVKS--SDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALV 162 (443)
T ss_dssp S-EEEEETTEE-TT-----SS---EEEEE--SSSEEEEE--TTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE
T ss_pred CeEEEEEcCccccceEEcCCc--ccceEEc-CcEEEEEC--CCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEE
Confidence 456665222232223344432 2344444 44444443 457999999999999999985 3 444556777765443
Q ss_pred CCCCeEEEEe
Q 019091 207 DGSSMLYQID 216 (346)
Q Consensus 207 dGs~~l~vID 216 (346)
- .+.+++++
T Consensus 163 t-~~~i~il~ 171 (443)
T PF04053_consen 163 T-KDSIYILK 171 (443)
T ss_dssp --S-SEEEEE
T ss_pred e-CCeEEEEE
Confidence 2 34555554
No 325
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.19 E-value=1.8 Score=47.11 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=66.8
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEE-eeCCEEEEEECCCCcEEEE
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVT-WLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~lt-w~~~~v~V~D~~tl~~i~t 185 (346)
-|.|+|+|++.++.| ++..+.+||+..|++....+-.. |.+..+ ++..+.++. --+..+-++|.+|++.+.+
T Consensus 159 ~l~lsP~Gr~v~~g~--ed~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGG--EDNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred EEeecCCCceeeccC--Ccceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 357789999999988 57899999999999987766332 223333 334444444 4467788999999999998
Q ss_pred EecC--CCceeEEeeCCCEEEEEC
Q 019091 186 FTHQ--MKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~LyvSd 207 (346)
...+ ...+..+.+|++.++--+
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred cCCccCCceeeeecCCceeeecCc
Confidence 7653 245555778888776644
No 326
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.01 E-value=6.6 Score=40.91 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=51.4
Q ss_pred eEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCC------CCEEEEec-----
Q 019091 241 LEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSN------RNRIFVTG----- 308 (346)
Q Consensus 241 LE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~------~~~LfVTG----- 308 (346)
|.+. ||++||+--....|.++++.++.......++.+.. . ....-|-|||++|+ .+.|||+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~---~---~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN---D---AQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec---c---CCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 6665 78999987556899999998887655554433321 0 12457899999976 35899982
Q ss_pred -C---CCCcEEEEEEee
Q 019091 309 -K---LWPKLYEINLRE 321 (346)
Q Consensus 309 -K---~Wp~l~ev~l~~ 321 (346)
+ ....|.+.++.+
T Consensus 109 ~~~~~~~~~I~R~~l~~ 125 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDK 125 (454)
T ss_pred CCCccCCcEEEEEEecC
Confidence 2 356788887754
No 327
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=82.93 E-value=3.5 Score=42.27 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.5
Q ss_pred eeeEEEEeCCCCEEEEecCC
Q 019091 291 VLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 291 vlNGIA~d~~~~~LfVTGK~ 310 (346)
.+.|+||+|.+++||+|-.-
T Consensus 240 N~qGl~w~P~tg~Lw~~e~g 259 (399)
T COG2133 240 NPQGLAWHPVTGALWTTEHG 259 (399)
T ss_pred CccceeecCCCCcEEEEecC
Confidence 56799999999999988433
No 328
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.89 E-value=50 Score=32.34 Aligned_cols=96 Identities=10% Similarity=0.012 Sum_probs=56.8
Q ss_pred eeEEEEEEecCCC-----------CcceeEEEecCCEEEEE----------------cCCCCCCeEEEEECCCCcEEEEe
Q 019091 92 TIQVVNEFPHDPR-----------AFTQGLLYAENDTLFES----------------TGLYGRSSVRRVALETGKVEAIN 144 (346)
Q Consensus 92 t~~Vv~t~phd~~-----------~FTqGL~~~~d~~LyeS----------------tGlyg~s~V~~iDl~Tgkv~~~~ 144 (346)
+|+++.++..... .-..-+.+.++|+++++ .|-.-++.+..+|++||+++.+.
T Consensus 33 ~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW 112 (299)
T PF14269_consen 33 SYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEW 112 (299)
T ss_pred CCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEE
Confidence 5777777765331 11234566677765551 11123468899999999998887
Q ss_pred ccC----CCeeE----------------------EEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019091 145 QME----GSYFG----------------------EGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 145 ~l~----~~~Fg----------------------eGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
..- ...+- -.+... .+.+.++.-.-+.|++||++|++++-++-
T Consensus 113 ~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lg 182 (299)
T PF14269_consen 113 SASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLG 182 (299)
T ss_pred EhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeC
Confidence 321 11100 011111 13455666667888899988888887763
No 329
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=82.19 E-value=38 Score=30.50 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=114.4
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEecc-CC-CeeEEEE-EEeCCEEEEE-EeeCCEEEEEECCC
Q 019091 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQM-EG-SYFGEGL-TLLGEKLFQV-TWLQKTGFIYDQNN 179 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l-~~-~~FgeGi-t~~g~~LY~l-tw~~~~v~V~D~~t 179 (346)
....++.+.+++..+...+ .+..+..||...+. ....+.. .. .....-. ...+..+.+. ...++.+.++|..+
T Consensus 66 ~~i~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 66 DSITSIAFSPDGELLLSGS--SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred ceEEEEEECCCCcEEEEec--CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 3346788887777666655 56699999999886 4444433 22 2222222 2233434444 44478999999988
Q ss_pred -CcEEEEEecCC--CceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE-EEEEec
Q 019091 180 -LNKLEEFTHQM--KDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVW 253 (346)
Q Consensus 180 -l~~i~ti~~~~--peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~-LyaNv~ 253 (346)
......+.... -....++++++.++.... +..+.++|..+.+.+..+.-.. .++.. +++. ++. +.+...
T Consensus 144 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~---~~~~~~~~~~~~~~~ 218 (466)
T COG2319 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT--DPVSS---LAFSPDGGLLIASGS 218 (466)
T ss_pred CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC--CceEE---EEEcCCcceEEEEec
Confidence 77777666431 134567888886666654 8899999998866666665522 22222 2333 444 444545
Q ss_pred CCCeEEEEeCCCCeEEEE-EECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 254 QTDCIARISHEDGVVLGW-VLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~-I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.+..|.+-|..+++++.. +.- + ... +.+ .+.+++ .+++++..-..+....+.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~---------~--~~~-~~~--~~~~~~-~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSG---------H--SDS-VVS--SFSPDG-SLLASGSSDGTIRLWDLR 271 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCC---------C--Ccc-eeE--eECCCC-CEEEEecCCCcEEEeeec
Confidence 566666668788887774 311 0 111 111 677777 444466666666555543
No 330
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=82.03 E-value=32 Score=35.57 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=72.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCC------cEEEEe--ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETG------KVEAIN--QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg------kv~~~~--~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
..|.|+.++++++|.| ++-.+++|..+.- |-++.. +-..+.|.-.+..-+..||-. ...++|..-|..|
T Consensus 60 NAlqFS~N~~~L~SGG--DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG-~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGG--DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG-ERWGTVIKHDIET 136 (609)
T ss_pred ceeeeccCCeEEeecC--CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC-CCcceeEeeeccc
Confidence 5789999899999988 6778899987642 222221 112457776555556667754 3346677778888
Q ss_pred CcEEEEEecC--C--CceeEEeeCCCEEEEECCCCeEEEEeCCC
Q 019091 180 LNKLEEFTHQ--M--KDGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 180 l~~i~ti~~~--~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T 219 (346)
-+-+--+... . -+|+..+|-...+.++-.+..|.+||-..
T Consensus 137 ~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 137 KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 7777766653 1 24444566666777766688999999654
No 331
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=81.87 E-value=15 Score=40.89 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=107.4
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC--eeEEEEEEeCCEEEEEEeeCCEEEEEEC
Q 019091 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~--~FgeGit~~g~~LY~ltw~~~~v~V~D~ 177 (346)
+.+..|- .++++. .+.+|-++| | .|++|...|.....+...-.. ----=+...|..+|++--....+-.+++
T Consensus 623 ~~g~lPv-rsla~~-ed~~was~g--G--~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfht 696 (925)
T KOG3522|consen 623 PTGSLPV-RSLAFQ-EDFVWASEG--G--CVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHT 696 (925)
T ss_pred ccCCccc-cchhhh-hceeeeecC--C--ceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecc
Confidence 3444443 566664 467888877 5 999999888766555533211 1111133368899999777778888899
Q ss_pred CCCcEEEEEecCCCceeEEeeCCCEEEEECC---CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC
Q 019091 178 NNLNKLEEFTHQMKDGWGLATDGKVLFGSDG---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (346)
Q Consensus 178 ~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdG---s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~ 254 (346)
+|+.-...+..- .-|--..|+++.+=++-. -+-|.|.++.|..+..-+++..+.+++++. + .-..-+|+.+-.
T Consensus 697 etl~hlqd~nia-T~vt~~lP~~kllsv~~rl~c~gl~~V~~~~~l~v~~~v~~~q~~k~~~~~--~-vS~~~~~~~vk~ 772 (925)
T KOG3522|consen 697 ETLWHLQDSNIA-TSVTVDLPFGKLLSVPGRLWCQGLLMVLTSLTLLVALPVPRLQDSKVTGRM--M-VSYHAVWSPVKF 772 (925)
T ss_pred cccCCccccccC-cceeecCCCcccccCCCcccccceeEEeccceeEEEeeeeeccCCceeeee--e-eecccccccchh
Confidence 999988888753 344456677766555322 789999999999999999998776766532 2 223345665555
Q ss_pred CCeEEEEeCCCCeEEEEEEC
Q 019091 255 TDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l 274 (346)
.-.+...-++|-......++
T Consensus 773 ~~~~~~~H~~~~~~~~e~~~ 792 (925)
T KOG3522|consen 773 SAHATALHEKTKDKSREVLA 792 (925)
T ss_pred hhhhhhhccchHhhhhhccC
Confidence 55555666666555555544
No 332
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.66 E-value=27 Score=35.85 Aligned_cols=191 Identities=9% Similarity=0.066 Sum_probs=98.4
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
-++|.+||.+.-+.| .+..+|+||..+.. ++....-..+. .-++...+--++++-......|.|.+++..+++-.
T Consensus 149 ~vaf~~~gs~latgg--~dg~lRv~~~Ps~~t~l~e~~~~~eV--~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGG--TDGTLRVWEWPSMLTILEEIAHHAEV--KDLDFSPDGKFLASIGADSARVWSVNTGAALARKT 224 (398)
T ss_pred EEEEcCCCCEeeecc--ccceEEEEecCcchhhhhhHhhcCcc--ccceeCCCCcEEEEecCCceEEEEeccCchhhhcC
Confidence 456777887777766 45599999954443 33333333322 22333222222333333489999999986666554
Q ss_pred -cCCCceeE---E--eeCCCEEEEEC---CCCeEEEEeCCCCcE----EEEEEeccCCeeeeeceeeEee-CCEEEEEec
Q 019091 188 -HQMKDGWG---L--ATDGKVLFGSD---GSSMLYQIDPQTLKV----IRKDIVRYKGREVRNLNELEFI-KGEVWANVW 253 (346)
Q Consensus 188 -~~~peGwG---L--t~Dg~~LyvSd---Gs~~l~vIDp~T~kv----i~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~ 253 (346)
.+.+|-.. + .+++..|+++. -...|...|...-+- ..+-.+... +- +.-|... +|+..|=--
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~s---iSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KS---ISSLAVSDDGKFLALGT 300 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-Cc---ceeEEEcCCCcEEEEec
Confidence 22122222 1 22334555532 144444444322111 000000000 01 1123333 566555334
Q ss_pred CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE-EecCCCCcEEEEEE
Q 019091 254 QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF-VTGKLWPKLYEINL 319 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf-VTGK~Wp~l~ev~l 319 (346)
+++.|+++|..+.+.+..+.= . + ....-|++|.|+.+.+- |...+=-.+..|..
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~-----a---H----~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKE-----A---H----LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcEEEEEeceeeeeEeehh-----h---h----eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 599999999999998877721 1 1 22667899999988666 34333345555555
No 333
>KOG4328 consensus WD40 protein [Function unknown]
Probab=81.50 E-value=30 Score=36.17 Aligned_cols=133 Identities=11% Similarity=0.053 Sum_probs=83.4
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEE--e-ccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEEEC----
Q 019091 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAI--N-QMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQ---- 177 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~--~-~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~D~---- 177 (346)
.++++.|-. .++.++|+ +.++.+||+..-.-.+. + .++. ..-..=+++.++. .+.|-+++.+-|||.
T Consensus 326 ~sv~~NP~~p~~laT~s~--D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASL--DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ceeecCCCCchheeeccc--CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccc
Confidence 688888755 56777774 45999999986433332 1 1221 1112223466777 778899999999999
Q ss_pred CCCcEEEEEecCCCceeEE-------eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019091 178 NNLNKLEEFTHQMKDGWGL-------ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 178 ~tl~~i~ti~~~~peGwGL-------t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
+....+.+|.+....|-=| .||-..+++.+-...|-|||++.++.+..+--.. -..+.-+|++.+-
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPM 475 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeeccc
Confidence 6788888998742222222 3466777777878889999998888554321111 1233455665443
No 334
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=81.17 E-value=60 Score=32.16 Aligned_cols=151 Identities=14% Similarity=0.061 Sum_probs=90.8
Q ss_pred CCcceeEEEecC------CEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEEEeC------CEEEEE-EeeC
Q 019091 104 RAFTQGLLYAEN------DTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLG------EKLFQV-TWLQ 169 (346)
Q Consensus 104 ~~FTqGL~~~~d------~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit~~g------~~LY~l-tw~~ 169 (346)
..|.||+.|.|. +.|+.+ |..| ..-.|.+.|.++.-.+ .... -|+++.. -+++++ +-..
T Consensus 67 v~~y~g~~F~p~s~~~kc~~la~g-G~~g--~fd~~~~~tn~~h~~~cd~sn----n~v~~~~r~cd~~~~~~i~sndht 139 (344)
T KOG4532|consen 67 VEFYTGMTFTPGSFINKCVTLADG-GASG--QFDLFACNTNDGHLYQCDVSN----NDVTLVKRYCDLKFPLNIASNDHT 139 (344)
T ss_pred EEeeecccccchHhhccccEEEec-cccc--eeeeecccCcccceeeecccc----cchhhhhhhcccccceeeccCCcc
Confidence 457799988863 244443 3223 5666666666553333 2222 3345543 246665 4456
Q ss_pred CEEEEEECCCCcEEEEEe-cCCCceeEEeeCCCEEEEECCCCe--EEEEeCCCCcEEEEEEec---cCCeeeeeceeeEe
Q 019091 170 KTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSDGSSM--LYQIDPQTLKVIRKDIVR---YKGREVRNLNELEF 243 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~-~~~peGwGLt~Dg~~LyvSdGs~~--l~vIDp~T~kvi~~I~V~---~~G~pv~~lNELE~ 243 (346)
.+++++|....+..--++ +. -....+++|++++-.-..+++ .|-||-+....++ +.+. ++|.-.. .+
T Consensus 140 ~k~~~~~~~s~~~~~h~~~~~-~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S-~s---- 212 (344)
T KOG4532|consen 140 GKTMVVSGDSNKFAVHNQNLT-QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNS-FS---- 212 (344)
T ss_pred eeEEEEecCcccceeeccccc-eeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeee-ec----
Confidence 778888877766655555 22 245578899998877655665 5667766666665 4442 2232211 11
Q ss_pred eCCEEEEEecCCCeEEEEeCCCCeE
Q 019091 244 IKGEVWANVWQTDCIARISHEDGVV 268 (346)
Q Consensus 244 ~~G~LyaNv~~sn~I~vID~~TG~V 268 (346)
.+...||...+..++++-|....+.
T Consensus 213 ~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred cCcceEEEEecCCcEEEEEeccccc
Confidence 1457999999999999999988654
No 335
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=81.16 E-value=4 Score=25.75 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=18.9
Q ss_pred eeeEEEEeCCCCEEEEecCCCCcEE
Q 019091 291 VLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 291 vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.|.|||.+ ..+.+|||...-..|.
T Consensus 3 ~P~gvav~-~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 3 YPHGVAVD-SDGNIYVADSGNHRVQ 26 (28)
T ss_dssp SEEEEEEE-TTSEEEEEECCCTEEE
T ss_pred CCcEEEEe-CCCCEEEEECCCCEEE
Confidence 68999999 6788999986655543
No 336
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=81.06 E-value=53 Score=32.83 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=68.8
Q ss_pred CEEEEEEeeCCEEEEEEC-CCCcEEEEEecCCCceeEE--eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeee
Q 019091 160 EKLFQVTWLQKTGFIYDQ-NNLNKLEEFTHQMKDGWGL--ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~-~tl~~i~ti~~~~peGwGL--t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~ 236 (346)
+..++..-.++.|+..+. .+-+.....+--..+=++| +.|+..++-+-.+.+|+++|.+|++.+++.+... .
T Consensus 59 gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~-----~ 133 (338)
T KOG0265|consen 59 GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT-----S 133 (338)
T ss_pred CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc-----c
Confidence 456666666677776662 2333333333212233343 5688888876668899999999999999888754 2
Q ss_pred eceeeEeeC-C-EEEEEecCCCeEEEEeCCCCeEEEEE
Q 019091 237 NLNELEFIK-G-EVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 237 ~lNELE~~~-G-~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
..|.+..-+ | .+..+...+.++-+-|..+-+.+.++
T Consensus 134 ~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 134 FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred eeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 556665443 3 45555555667888888876655554
No 337
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=80.01 E-value=10 Score=40.18 Aligned_cols=109 Identities=19% Similarity=0.335 Sum_probs=63.1
Q ss_pred ceeEE---eeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCC
Q 019091 192 DGWGL---ATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG 266 (346)
Q Consensus 192 eGwGL---t~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG 266 (346)
|+..+ .++...+|++| + ...||.+=+...-- .... ..|.--...|+|||+-|..+ |
T Consensus 247 E~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~-------~~~~---~~~~~ll~~GtLyaak~~~~---------g 307 (524)
T PF05787_consen 247 EAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWD-------PGDR---AANRDLLDEGTLYAAKFNQD---------G 307 (524)
T ss_pred cceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCC-------Cccc---chhhhhhhCCEeceEEECCC---------C
Confidence 55555 45556789987 3 55777665443110 0000 11111146799999988665 2
Q ss_pred eEEEEEECCch-------------hhhhhh-------ccCCCCceeeEEEEeCCCCEEEEe-------------------
Q 019091 267 VVLGWVLLPNL-------------RERLVA-------AGYNGIDVLNGIAWDSNRNRIFVT------------------- 307 (346)
Q Consensus 267 ~Vv~~I~l~~l-------------~~~~~~-------~~~~~~~vlNGIA~d~~~~~LfVT------------------- 307 (346)
-..||+|..- ...+.+ -+....+-|.||+++|..+++|+|
T Consensus 308 -~~~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~ 386 (524)
T PF05787_consen 308 -TGEWVPLGHGQGGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRA 386 (524)
T ss_pred -cEEEEECCCcccccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCccc
Confidence 2356666321 110000 022346789999999999999998
Q ss_pred cCCCCcEEEEEEe
Q 019091 308 GKLWPKLYEINLR 320 (346)
Q Consensus 308 GK~Wp~l~ev~l~ 320 (346)
+..++.||++...
T Consensus 387 ~n~~G~I~r~~~~ 399 (524)
T PF05787_consen 387 GNGYGQIYRYDPD 399 (524)
T ss_pred CCcccEEEEeccc
Confidence 4556688887754
No 338
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.97 E-value=17 Score=41.61 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=72.9
Q ss_pred ceeEEEe---cCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCEEEEEECCCCc
Q 019091 107 TQGLLYA---ENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 107 TqGL~~~---~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
-.|+.++ ..|.||++ | +-..|++||+...++.+.++.+.+--...++. +++-+.++-..++.+-+||...-.
T Consensus 1166 ~~~~v~dWqQ~~G~Ll~t-G--d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1166 GTGLVVDWQQQSGHLLVT-G--DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP 1242 (1387)
T ss_pred CCCeeeehhhhCCeEEec-C--CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC
Confidence 3467776 45677766 5 46799999999999999999986544444444 346788999999999999976433
Q ss_pred EEEEEe----cCCCce---eEEeeCCC-EEEEECCCCeEEEEeCCCC
Q 019091 182 KLEEFT----HQMKDG---WGLATDGK-VLFGSDGSSMLYQIDPQTL 220 (346)
Q Consensus 182 ~i~ti~----~~~peG---wGLt~Dg~-~LyvSdGs~~l~vIDp~T~ 220 (346)
.-.-+. +..+++ .-|-+.|- .|+..-.++.|+++|+..-
T Consensus 1243 ~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1243 PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 222221 212222 12333343 3555445778999999873
No 339
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=79.93 E-value=13 Score=25.58 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=29.4
Q ss_pred CEEEEEecCCC-eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeC
Q 019091 246 GEVWANVWQTD-CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 246 G~LyaNv~~sn-~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
++||=+.|..+ .|.+.+..-....-.+.- + ...|+|||+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~-~------------l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD-D------------LQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES-S------------TSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC-C------------CCCcCEEEECC
Confidence 57888888888 888888877664444422 2 34799999985
No 340
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=79.84 E-value=4.2 Score=42.41 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=81.3
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
-|.|-|.+.|+++.+ ..+.+...|..+|+++..+..+.+.-- +--.| +-+.=+---+++|....++.-+.+..+
T Consensus 214 rLeFLPyHfLL~~~~--~~G~L~Y~DVS~GklVa~~~t~~G~~~--vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 214 RLEFLPYHFLLVAAS--EAGFLKYQDVSTGKLVASIRTGAGRTD--VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred hhcccchhheeeecc--cCCceEEEeechhhhhHHHHccCCccc--hhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 678888788999988 455999999999999998866542100 00011 223333455788888899988887776
Q ss_pred ec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019091 187 TH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 187 ~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
=. . .-.+.++.++|..+..|--++.+-++|..++....++..
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 32 2 125667777788555444489999999999998777666
No 341
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=79.81 E-value=19 Score=38.78 Aligned_cols=129 Identities=17% Similarity=0.086 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEecc----CCCeeE------EEEEEeCCEEEEEE-eeCCEEEEEECCCCcEEEE
Q 019091 117 TLFESTGLYGRSSVRRVALETGKVEAINQM----EGSYFG------EGLTLLGEKLFQVT-WLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l----~~~~Fg------eGit~~g~~LY~lt-w~~~~v~V~D~~tl~~i~t 185 (346)
.|+.+.+ .++.|..||+.+......+.. +..+++ ..+...++-|-++. -.++.+++||..+.+.+-.
T Consensus 188 gLla~Gt--~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 188 GLLACGT--EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred ceEEecc--cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 4665544 467999999998776666643 333432 34455565555553 4579999999998888765
Q ss_pred EecC--CC---ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecC
Q 019091 186 FTHQ--MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQ 254 (346)
Q Consensus 186 i~~~--~p---eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~ 254 (346)
-.++ .| =-| +..|++--.+|-....+-++|+.|++....|.-.. -+|...++ .|.+|.++..
T Consensus 266 kdh~~e~pi~~l~~-~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~------~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 266 KDHGYELPIKKLDW-QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS------DLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred cccCCccceeeecc-cccCCCceEEecchHHhhhcccccCCceeeccccC------CcCceeeecCCceEEEecCC
Confidence 5543 11 111 11244444444446688889999999876665433 47777766 3567766643
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.28 E-value=70 Score=35.18 Aligned_cols=196 Identities=16% Similarity=0.156 Sum_probs=114.5
Q ss_pred CCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCC-----cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEEC
Q 019091 104 RAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETG-----KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 104 ~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tg-----kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~ 177 (346)
+.-...|.+++|+ ++|.+.- +.+|+..-+++. ++.....++... .-|.....+|.++|-..-.++-.+.
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~---~Gkv~~~~L~s~~~~~~~~q~il~~ds~I--VQlD~~q~~LLVStl~r~~Lc~tE~ 198 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDS---QGKVVLTELDSRQAFLSKSQEILSEDSEI--VQLDYLQSYLLVSTLTRCILCQTEA 198 (726)
T ss_pred CceEEEEEecccccEEeecCC---CceEEEEEechhhhhccccceeeccCcce--EEeecccceehHhhhhhhheeecch
Confidence 3334578899888 6887743 347777777762 122222334332 3344445677777776666777777
Q ss_pred CCCcEEEEEecCCCceeEEee--C-----CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC----e-eeeeceeeE---
Q 019091 178 NNLNKLEEFTHQMKDGWGLAT--D-----GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG----R-EVRNLNELE--- 242 (346)
Q Consensus 178 ~tl~~i~ti~~~~peGwGLt~--D-----g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G----~-pv~~lNELE--- 242 (346)
+|.+++++=+=..+..+|-+. - .-.||.+=-..+++..|.+ ++|+++..-.+.+ . ++...+ +|
T Consensus 199 eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~-G~V~~Thqfk~ala~~p~p~i~~~s-~esp~ 276 (726)
T KOG3621|consen 199 ETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFA-GEVIKTHQFKDALARPPAPEIPIRS-LESPN 276 (726)
T ss_pred hHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecc-eeEEEeeehhhhhccCCCCcccCCC-cCCcc
Confidence 787777765532222334332 1 2256666656688888864 7888888776531 1 112222 11
Q ss_pred -----ee-------------CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEE
Q 019091 243 -----FI-------------KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRI 304 (346)
Q Consensus 243 -----~~-------------~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~L 304 (346)
+. +++ +=.|.+--|++.|+.+-+|+.|-.. .. |-+. .+-.++.|
T Consensus 277 ~~~~~~~~q~ls~~k~~~l~~~~--vLa~te~Giyv~d~~~~~v~l~se~---~~----------DI~d---Vs~~~nei 338 (726)
T KOG3621|consen 277 QRSLPSGTQHLSLSKSSTLHSDR--VLAWTEVGIYVFDSNNSQVYLWSEG---GH----------DILD---VSHCGNEI 338 (726)
T ss_pred ccCCCCCccccccceeEEeecce--EEEeecceEEEEEeccceEEEeecC---CC----------ceeE---EeecCceE
Confidence 10 122 3345555699999999999999833 11 1111 33457889
Q ss_pred EEecCCCCcEEEEEEeecccc
Q 019091 305 FVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 305 fVTGK~Wp~l~ev~l~~~~~~ 325 (346)
||=..+- .|+.+.+....++
T Consensus 339 FvL~~d~-~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 339 FVLNLDR-GLKVESVASRQRK 358 (726)
T ss_pred EEEecCC-ceeEEEeehhHHH
Confidence 9875544 8998888765444
No 343
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=79.01 E-value=21 Score=36.42 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=69.8
Q ss_pred eeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE-eCCCCeEEEEEEC
Q 019091 197 ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI-SHEDGVVLGWVLL 274 (346)
Q Consensus 197 t~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI-D~~TG~Vv~~I~l 274 (346)
.+||..|..+- |++.|.++||.|++-+.-+.-+-+|.. .| -..+++.++||+-. +..-.+= ...+-....|+-.
T Consensus 204 n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s--lL-kwSPdgd~lfaAt~-davfrlw~e~q~wt~erw~lg 279 (445)
T KOG2139|consen 204 NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS--LL-KWSPDGDVLFAATC-DAVFRLWQENQSWTKERWILG 279 (445)
T ss_pred cCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee--eE-EEcCCCCEEEEecc-cceeeeehhcccceecceecc
Confidence 46788887765 899999999999887655544433332 11 23445668998753 2222222 2233334444422
Q ss_pred CchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 275 PNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 275 ~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
++ .--+-.|+|+|.+|+.+--.-|.||.+.+..
T Consensus 280 sg--------------rvqtacWspcGsfLLf~~sgsp~lysl~f~~ 312 (445)
T KOG2139|consen 280 SG--------------RVQTACWSPCGSFLLFACSGSPRLYSLTFDG 312 (445)
T ss_pred CC--------------ceeeeeecCCCCEEEEEEcCCceEEEEeecC
Confidence 21 2345679999999999999999999999864
No 344
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=78.92 E-value=91 Score=33.68 Aligned_cols=141 Identities=15% Similarity=0.206 Sum_probs=77.1
Q ss_pred CCCCCceeeeEEEEEEecCCCCcceeEEEec-CCEEEEEcCC----CCCCeEEEEECCCCcEEEEec------c------
Q 019091 84 VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAE-NDTLFESTGL----YGRSSVRRVALETGKVEAINQ------M------ 146 (346)
Q Consensus 84 ~~~~~~~~t~~Vv~t~phd~~~FTqGL~~~~-d~~LyeStGl----yg~s~V~~iDl~Tgkv~~~~~------l------ 146 (346)
++..+......|..++|-+- .|-.+-+ -+.+|+..+. .|+..|+.+.++.|++.-+-. +
T Consensus 122 v~ee~~~~~l~V~G~IP~~L----~Gty~RNGPnp~f~p~~~~H~FDGDGMvhav~f~dG~a~y~~RfVrT~~~~~E~~a 197 (590)
T PLN02258 122 VPEQPVRHNLPVTGRIPDCI----DGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQERAL 197 (590)
T ss_pred ccccCCcccceEEeeCCCCC----CeEEEEeCCCCCCCCCCCCccccCCceEEEEEECCCeEEEEeeeecchhHHHHHhc
Confidence 35566667788999999642 4555531 1123332111 255688888888877533321 0
Q ss_pred CCCee-------------------------------------EEEEEEeCCEEEEEEeeCCEEEEEECC---CCcEEEEE
Q 019091 147 EGSYF-------------------------------------GEGLTLLGEKLFQVTWLQKTGFIYDQN---NLNKLEEF 186 (346)
Q Consensus 147 ~~~~F-------------------------------------geGit~~g~~LY~ltw~~~~v~V~D~~---tl~~i~ti 186 (346)
+...| ..++...+++||. -|+.+.=+.+|.. ||+-++.+
T Consensus 198 gr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlA-L~E~g~Py~l~~d~~~TLeT~G~~ 276 (590)
T PLN02258 198 GRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLA-MSEDDLPYQVRITGDGDLETVGRY 276 (590)
T ss_pred CCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEE-EEcCCCceEecCCCCCCcccCccc
Confidence 11111 1233345678887 5567777888653 99999988
Q ss_pred ecCCCceeEE------eeCCCEEEE--EC-C---CCeEEEEeCCCCcEEEEEEecc
Q 019091 187 THQMKDGWGL------ATDGKVLFG--SD-G---SSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 187 ~~~~peGwGL------t~Dg~~Lyv--Sd-G---s~~l~vIDp~T~kvi~~I~V~~ 230 (346)
+....-...+ +++.+.+|. -+ + .-+++++|+ ++++...+.+..
T Consensus 277 df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~-~G~~~~~~~i~l 331 (590)
T PLN02258 277 DFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSP-DGEKSPDVEIPL 331 (590)
T ss_pred ccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECC-CCCEEeeEEeeC
Confidence 8641112233 333333333 23 2 236778886 466666665543
No 345
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=78.60 E-value=33 Score=37.41 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=87.4
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-----CCc---eeEEee------C----CCEEEEECCCCeEEEEeCCC
Q 019091 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-----MKD---GWGLAT------D----GKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-----~pe---GwGLt~------D----g~~LyvSdGs~~l~vIDp~T 219 (346)
.++.||++|= -|+++.+|++|++.+-+++.. .+. --|+++ + -+++|.---+.+|.-||.+|
T Consensus 213 vgdtlYvcTp-hn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~t 291 (773)
T COG4993 213 VGDTLYVCTP-HNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADT 291 (773)
T ss_pred ECCEEEEecC-cceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceEEEEeCCC
Confidence 5799999998 789999999999999998753 112 122322 1 24688855578999999999
Q ss_pred CcEEEEEEeccCCeeeeeceeeEeeC--------------CEEEEEe-------c-CCCeEEEEeCCCCeEEEEEECCch
Q 019091 220 LKVIRKDIVRYKGREVRNLNELEFIK--------------GEVWANV-------W-QTDCIARISHEDGVVLGWVLLPNL 277 (346)
Q Consensus 220 ~kvi~~I~V~~~G~pv~~lNELE~~~--------------G~LyaNv-------~-~sn~I~vID~~TG~Vv~~I~l~~l 277 (346)
+|+.-+...+. .--...|.....+ +.|.+-. | .+.-|--.|..||+.+-..|..+-
T Consensus 292 Gkvc~~Fa~~G--a~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnp 369 (773)
T COG4993 292 GKVCWSFANKG--ALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNP 369 (773)
T ss_pred CcEeheeccCc--eeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEccCCCCC
Confidence 99976654432 1100111111111 2233211 1 123344567777776665554221
Q ss_pred hhhh--hh-cc--CCCCceeeEEEEeCCCCEEEEecCC
Q 019091 278 RERL--VA-AG--YNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 278 ~~~~--~~-~~--~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
-... .+ ++ ....++.--..||++.+.+|+-=.|
T Consensus 370 D~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn 407 (773)
T COG4993 370 DPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGN 407 (773)
T ss_pred CCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCC
Confidence 1000 00 11 1445667778899999999985443
No 346
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=78.09 E-value=19 Score=39.06 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=90.7
Q ss_pred EecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEE
Q 019091 99 FPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 99 ~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~ 175 (346)
.-|+..-| -|...|...++++.. |+++++.||+++++....- -++. ..--+.+...+..+|++-..++.+.+.
T Consensus 97 ~aH~nAif--Dl~wapge~~lVsas--GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 97 LAHKNAIF--DLKWAPGESLLVSAS--GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred ccccceeE--eeccCCCceeEEEcc--CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 34654444 566667446888877 8999999999998876652 1211 011133334455566666666666666
Q ss_pred ECC-CC----------------------cEE-EEEecC-----CCce---eEEeeCCCEEEEEC-CCCeEEEEeCCCCcE
Q 019091 176 DQN-NL----------------------NKL-EEFTHQ-----MKDG---WGLATDGKVLFGSD-GSSMLYQIDPQTLKV 222 (346)
Q Consensus 176 D~~-tl----------------------~~i-~ti~~~-----~peG---wGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kv 222 (346)
|.. ++ +++ +++.-. .-++ .-+--|...|..+- ++..|-|+|..+.+-
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 642 11 000 011110 0112 11223555555544 388999999877554
Q ss_pred EEEE-EeccC------Ceeeeecee-eEeeCCEEEEEecCCCeEEEEeCCCCeE
Q 019091 223 IRKD-IVRYK------GREVRNLNE-LEFIKGEVWANVWQTDCIARISHEDGVV 268 (346)
Q Consensus 223 i~~I-~V~~~------G~pv~~lNE-LE~~~G~LyaNv~~sn~I~vID~~TG~V 268 (346)
.-+. +.+.+ .+-+++.|= ++-.+-+||||+- +|.|+.-|+.+..+
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSI 305 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCc
Confidence 2211 11111 123333332 2223459999996 99999999988764
No 347
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=77.53 E-value=5.3 Score=40.64 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=68.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
.-+++++|++...++-+ +..|++.....--++....++..-|--++++..+++....-.++++++.|..+++.+.+++
T Consensus 155 ~dVavS~D~~~IitaDR--DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 155 LDVAVSPDDQFIITADR--DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred heeeecCCCCEEEEecC--CceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 35788899987777774 4488888888777888999999999999999998888888889999999999999999988
Q ss_pred c
Q 019091 188 H 188 (346)
Q Consensus 188 ~ 188 (346)
+
T Consensus 233 l 233 (390)
T KOG3914|consen 233 L 233 (390)
T ss_pred h
Confidence 6
No 348
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=77.46 E-value=64 Score=32.36 Aligned_cols=92 Identities=8% Similarity=0.047 Sum_probs=66.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEE--eeCCCE
Q 019091 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGL--ATDGKV 202 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGL--t~Dg~~ 202 (346)
+..|.+||..|-++.-..++++..+-..+++.- +.|..+-..+-+|-.-|.+++.-..++.--..+=.++ +|-.++
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~ 202 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW 202 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCcee
Confidence 469999999999999999999887777777743 6677778888999999999998888776422232333 455666
Q ss_pred EEEECC-CCeEEEEeCC
Q 019091 203 LFGSDG-SSMLYQIDPQ 218 (346)
Q Consensus 203 LyvSdG-s~~l~vIDp~ 218 (346)
+..+-+ ++.+.++|..
T Consensus 203 vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDIR 219 (397)
T ss_pred EEEecCCCceEEEEEee
Confidence 555543 5667777743
No 349
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=77.22 E-value=14 Score=41.54 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEE
Q 019091 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGS 206 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvS 206 (346)
+..+..+|+.+++..+...+... |.-|--.++++.-+--..++|++.|+++++.+++|..-...=-.++-.|+.|..
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~--~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLit- 232 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSAS--GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLIT- 232 (1118)
T ss_pred hhheeeeecccceeeeeeeccCC--ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEE-
Confidence 56899999999999998888763 222333677877777789999999999999999998532111123344665544
Q ss_pred CC----------CCeEEEEeCCCCcEEEEEEeccC
Q 019091 207 DG----------SSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 207 dG----------s~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
-| +..|-|.|..+++.+.-|.+..+
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~ 267 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG 267 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhccCCcccccC
Confidence 22 45688999999998877777543
No 350
>PRK13616 lipoprotein LpqB; Provisional
Probab=76.92 E-value=1.1e+02 Score=32.89 Aligned_cols=109 Identities=11% Similarity=-0.104 Sum_probs=53.2
Q ss_pred eeEEEecCCE--EEEEcC----CCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee-----------CC
Q 019091 108 QGLLYAENDT--LFESTG----LYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-----------QK 170 (346)
Q Consensus 108 qGL~~~~d~~--LyeStG----lyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~-----------~~ 170 (346)
...++++||. .|+.+- ....+.|.+++.... . ..+.-+...-.=-..++|+.||.+.-. .+
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~g 430 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATG 430 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCc
Confidence 4567788873 566531 014568888886322 2 222111110000123344555555322 33
Q ss_pred EEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEE-ECCCCeEEE---EeCCCCc
Q 019091 171 TGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG-SDGSSMLYQ---IDPQTLK 221 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Lyv-SdGs~~l~v---IDp~T~k 221 (346)
.+++++.+..+....++.+ .....+++||+++.+ ++| +|++ +....++
T Consensus 431 ql~~~~vd~ge~~~~~~g~-Issl~wSpDG~RiA~i~~g--~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 431 QLARTPVDASAVASRVPGP-ISELQLSRDGVRAAMIIGG--KVYLAVVEQTEDGQ 482 (591)
T ss_pred eEEEEeccCchhhhccCCC-cCeEEECCCCCEEEEEECC--EEEEEEEEeCCCCc
Confidence 4555554443332222222 355668999998755 543 6766 5545553
No 351
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.91 E-value=79 Score=31.09 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=98.3
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC--EEEEEcCCCCCCeEEEEECCCC-cEEEEecc-CCCeeEEEEEEeCCEEEEEEe
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAEND--TLFESTGLYGRSSVRRVALETG-KVEAINQM-EGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~--~LyeStGlyg~s~V~~iDl~Tg-kv~~~~~l-~~~~FgeGit~~g~~LY~ltw 167 (346)
.++..+.|.....-| +++.+++. .++.+.| +.+++.||+.-- +-++..+- ..+.|..--....++.+++.-
T Consensus 50 gi~e~~s~d~~D~Lf--dV~Wse~~e~~~~~a~G---DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS 124 (311)
T KOG0277|consen 50 GIQECQSYDTEDGLF--DVAWSENHENQVIAASG---DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS 124 (311)
T ss_pred CeEEEEeeeccccee--EeeecCCCcceEEEEec---CceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec
Confidence 578889998877776 89998654 6787766 569999994321 11111111 122222222223456666655
Q ss_pred eCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEEC-CCCeEEEEeCCC-CcEEEEEEeccCCeeeeeceeeEe
Q 019091 168 LQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T-~kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
.++++-+.|++-.+-+.||.-- .-++-..+|--.-|+.|- |+..+.++|.+. ++-.. |++ ++...|.+
T Consensus 125 WD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a-------h~~Eil~c 196 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA-------HNSEILCC 196 (311)
T ss_pred cCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-------ccceeEee
Confidence 5689999999888888888631 124445677666677754 778888888543 22221 444 22222333
Q ss_pred e----CCEEEEEecCCCeEEEEeCCCCe
Q 019091 244 I----KGEVWANVWQTDCIARISHEDGV 267 (346)
Q Consensus 244 ~----~G~LyaNv~~sn~I~vID~~TG~ 267 (346)
+ |..+.|+--.++.|-.=|.+..+
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhcc
Confidence 3 45677766666777777777665
No 352
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=76.90 E-value=18 Score=40.82 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=74.7
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019091 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 162 LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
-.+.-...+.+..+|.++.+..+...++.++---+..+++.|+..|..++|...||.++++++++....+ .+..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-----siSDf 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-----SISDF 223 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccc-----ceeee
Confidence 3444455788999999999999999987544333677889999999999999999999999999988553 11122
Q ss_pred EeeCCEEEEEecCC---------CeEEEEeCCCCeEEEEEEC
Q 019091 242 EFIKGEVWANVWQT---------DCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 242 E~~~G~LyaNv~~s---------n~I~vID~~TG~Vv~~I~l 274 (346)
+. -|.+.+++..+ .-|-|-|..+.+-+.-|.+
T Consensus 224 Dv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~ 264 (1118)
T KOG1275|consen 224 DV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF 264 (1118)
T ss_pred ec-cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc
Confidence 22 24444444332 2355666677766666644
No 353
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=76.76 E-value=1.3e+02 Score=33.53 Aligned_cols=176 Identities=17% Similarity=0.203 Sum_probs=105.9
Q ss_pred eEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEE
Q 019091 129 SVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGS 206 (346)
Q Consensus 129 ~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvS 206 (346)
.++.+.++...+..-+.-....-+......++.+|-.+-..+.++-..........-...+ .++||++..-++.+|-+
T Consensus 418 ~ir~~~~~~~~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~t 497 (877)
T KOG1215|consen 418 DIRRISLDCSDVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWT 497 (877)
T ss_pred cceecccCCCcceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceec
Confidence 5666666665322222211233344444457789988888888887776554444433433 57999999889999999
Q ss_pred C-CCCeEEEEeCCCCcEEEEEEeccC-CeeeeeceeeEeeCCEEEEEecCC-CeEEEEeCC--CCeEEEEEECCchhhhh
Q 019091 207 D-GSSMLYQIDPQTLKVIRKDIVRYK-GREVRNLNELEFIKGEVWANVWQT-DCIARISHE--DGVVLGWVLLPNLRERL 281 (346)
Q Consensus 207 d-Gs~~l~vIDp~T~kvi~~I~V~~~-G~pv~~lNELE~~~G~LyaNv~~s-n~I~vID~~--TG~Vv~~I~l~~l~~~~ 281 (346)
| +...+.+.+. ++.. +.+.+... ..| ..-+++...|.+|..-|.. +.|.+-..+ ..+++...
T Consensus 498 De~~~~i~v~~~-~g~~-~~vl~~~~l~~~--r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~--------- 564 (877)
T KOG1215|consen 498 DEGNCLIEVADL-DGSS-RKVLVSKDLDLP--RSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN--------- 564 (877)
T ss_pred ccCCceeEEEEc-cCCc-eeEEEecCCCCc--cceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC---------
Confidence 9 4778888883 3333 34444332 122 2223566688999999974 234332222 22222222
Q ss_pred hhccCCCCceeeEEEEeCCCCEEEEecCCCC-cEEEEEEeecc
Q 019091 282 VAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP-KLYEINLREMK 323 (346)
Q Consensus 282 ~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp-~l~ev~l~~~~ 323 (346)
+...|||+++|-..+++|=+-+.-. .+..+.....+
T Consensus 565 ------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~ 601 (877)
T KOG1215|consen 565 ------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQN 601 (877)
T ss_pred ------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCc
Confidence 1236799999999999998877776 56666654433
No 354
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.65 E-value=1.6e+02 Score=34.49 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=97.2
Q ss_pred EEEEEE--eCCEEEEEEeeCCEEEEEECCCC--cEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEE--
Q 019091 152 GEGLTL--LGEKLFQVTWLQKTGFIYDQNNL--NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK-- 225 (346)
Q Consensus 152 geGit~--~g~~LY~ltw~~~~v~V~D~~tl--~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~-- 225 (346)
-.|+.. +.+.+.+++.. +.+.++|+.+. +.++.++.|. .-..-+||++++-+.+|..+|.+.+ .+|..+..
T Consensus 71 i~s~~fl~d~~~i~v~~~~-G~iilvd~et~~~eivg~vd~GI-~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~~ 147 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITAL-GDIILVDPETLELEIVGNVDNGI-SAASWSPDEELLALITGRQTLLFMT-KDFEPIAEKP 147 (1265)
T ss_pred eEEEEEecccceEEEEecC-CcEEEEcccccceeeeeeccCce-EEEeecCCCcEEEEEeCCcEEEEEe-ccccchhccc
Confidence 344444 34567776655 55555598865 5566777652 3345678999998888877777655 55655433
Q ss_pred -----------EEeccCCe---eee-------------ece--e-eEeeCCEEEEEecCCCe----EEEEeCCCC-eEEE
Q 019091 226 -----------DIVRYKGR---EVR-------------NLN--E-LEFIKGEVWANVWQTDC----IARISHEDG-VVLG 270 (346)
Q Consensus 226 -----------I~V~~~G~---pv~-------------~lN--E-LE~~~G~LyaNv~~sn~----I~vID~~TG-~Vv~ 270 (346)
+.||. |+ .++ ..- | .+..+++.++. |..|. |+..-..+| +-+.
T Consensus 148 L~~d~~~~sk~v~VGw-GrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is-WRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGW-GRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSIS-WRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccceecc-cccceeeecchhhhcccccccccccccchhhccCCceEE-EccCCcEEEEEEEeccCCceeEE
Confidence 45553 22 111 000 1 12344455544 33322 445667777 6666
Q ss_pred EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccccccC----CCchhHH-Hhhhh
Q 019091 271 WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKD----GFNVDTI-IEQLC 340 (346)
Q Consensus 271 ~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~~~~----~~~~~~~-~~~~~ 340 (346)
.++-. +.|.....|....=..++|-|.|..+-..++. ++--.|.+-+.|.-.-. +|..+.. +|+||
T Consensus 226 V~drE---g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~-~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 226 VYDRE---GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK-TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred Eeccc---chhhcccCcccccccceeecCCCCeEeeeeec-CCCCcEEEEecCCccccccccCCcccccchheee
Confidence 66552 22221122333344568899977665555443 33347777665433222 2334445 88888
No 355
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=76.19 E-value=19 Score=38.65 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=78.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
.-|+...||.|+.|.. ++-++.+||+-..|.+..+..+ .+.|-.-+.+ .++++.+.--.+..|.+||..+.+.-+
T Consensus 54 N~LeWn~dG~lL~SGS--DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~ 131 (758)
T KOG1310|consen 54 NCLEWNADGELLASGS--DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG 131 (758)
T ss_pred cceeecCCCCEEeecC--CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccc
Confidence 5688888899998866 7789999999999999988765 5778776666 478999998899999999998755432
Q ss_pred EEecCCC---ce----------eEEeeCC-CEEEEECCCCeEEEEeCC
Q 019091 185 EFTHQMK---DG----------WGLATDG-KVLFGSDGSSMLYQIDPQ 218 (346)
Q Consensus 185 ti~~~~p---eG----------wGLt~Dg-~~LyvSdGs~~l~vIDp~ 218 (346)
. +.++. .- .+.++++ ..+|.+-.+.+|.+.|-.
T Consensus 132 ~-d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 132 M-DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred c-ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 1 11100 11 1234555 567776667888888854
No 356
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.01 E-value=96 Score=31.11 Aligned_cols=185 Identities=16% Similarity=0.118 Sum_probs=108.3
Q ss_pred CCCCCceeeeEEEEEEecCCCCcceeEEEecCCEEEE-----------EcCC--------CCCCeEEEEECCCCcEEEEe
Q 019091 84 VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFE-----------STGL--------YGRSSVRRVALETGKVEAIN 144 (346)
Q Consensus 84 ~~~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~Lye-----------StGl--------yg~s~V~~iDl~Tgkv~~~~ 144 (346)
...+-.+|.++.|..-|.....=-.-++.. |+.+|. ..+. ..-|-|+.+|.++++|.--.
T Consensus 16 ~~d~~~iY~felvG~~P~SGGDTYNAV~~v-Dd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLW 94 (339)
T PF09910_consen 16 RDDSEKIYRFELVGPPPTSGGDTYNAVEWV-DDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLW 94 (339)
T ss_pred cCCceEEEEeeeccCCCCCCCccceeeeee-cceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEE
Confidence 356677888888887775433211233333 344433 2221 23478999999999986665
Q ss_pred c--c-CCCee-EEEEEE----eCCEEEEEEeeCCE---EEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEEC---CCC
Q 019091 145 Q--M-EGSYF-GEGLTL----LGEKLFQVTWLQKT---GFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD---GSS 210 (346)
Q Consensus 145 ~--l-~~~~F-geGit~----~g~~LY~ltw~~~~---v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSd---Gs~ 210 (346)
+ + ++..+ ||=-.+ .+++||.+-...+. ++-+|+++++...-...+.+-|.-+ .|-...=+-+ |-+
T Consensus 95 kesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~KG~~~-~D~a~F~i~~~~~g~~ 173 (339)
T PF09910_consen 95 KESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLKGTLV-HDYACFGINNFHKGVS 173 (339)
T ss_pred ecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcCceEe-eeeEEEeccccccCCc
Confidence 3 2 22222 432222 36899988655544 7889999988777666554443332 2322222222 467
Q ss_pred eEEEEeCCCCcEEE-EEEecc--CCee--eeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEE
Q 019091 211 MLYQIDPQTLKVIR-KDIVRY--KGRE--VRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 211 ~l~vIDp~T~kvi~-~I~V~~--~G~p--v~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
.|+.+|..+.+.+. ...+.. +|.+ ...+..+.-+.+++||-+ ..-|.++||..++...-+
T Consensus 174 ~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~--rGGi~vgnP~~~e~~~f~ 238 (339)
T PF09910_consen 174 GIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV--RGGIFVGNPYNGEEFRFY 238 (339)
T ss_pred eEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEE--eccEEEeCCCCCCceeEE
Confidence 89999999988732 112211 2332 223344556677888765 677999999988765444
No 357
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=74.92 E-value=11 Score=26.51 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=21.9
Q ss_pred eeEEeeCCCEEEEECCCCeEEEEeCCC
Q 019091 193 GWGLATDGKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 193 GwGLt~Dg~~LyvSdGs~~l~vIDp~T 219 (346)
-..+.-.|+.+|++++.+-|.++|..+
T Consensus 4 a~~v~v~g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEEEECCEEEEEeCCCCEEEEECCC
Confidence 345677799999999989999998544
No 358
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=74.89 E-value=86 Score=32.25 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=81.1
Q ss_pred CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeE---EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeee
Q 019091 159 GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235 (346)
Q Consensus 159 g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG---Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv 235 (346)
|..+--+...+..+.+.|+++...+--++.+ +.|.. .+|||++||.+-=+....+..-....-..+...+.+ +--
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvq 284 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQ 284 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccC-CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-cee
Confidence 4455556777889999999998776655544 45554 489999999986566666664333333333444321 110
Q ss_pred eeceeeEeeCCEEEEEecCCCeEEEEe----------CCCC-eEEEEEECCchhhhhhhccC-CCCceeeEEEEeCCCCE
Q 019091 236 RNLNELEFIKGEVWANVWQTDCIARIS----------HEDG-VVLGWVLLPNLRERLVAAGY-NGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 236 ~~lNELE~~~G~LyaNv~~sn~I~vID----------~~TG-~Vv~~I~l~~l~~~~~~~~~-~~~~vlNGIA~d~~~~~ 303 (346)
. --....+.+|.-++..+..|...- +.+- +++-..|++.+. ..++. .-..-+..|||||-|.+
T Consensus 285 t--acWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGey 359 (445)
T KOG2139|consen 285 T--ACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEY 359 (445)
T ss_pred e--eeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCE
Confidence 0 001111224444444455444332 2221 233333443322 11111 11334577999999999
Q ss_pred EEEecCCCCcE
Q 019091 304 IFVTGKLWPKL 314 (346)
Q Consensus 304 LfVTGK~Wp~l 314 (346)
|-|+=|.=+.+
T Consensus 360 Lav~fKg~~~v 370 (445)
T KOG2139|consen 360 LAVIFKGQSFV 370 (445)
T ss_pred EEEEEcCCchh
Confidence 99998877733
No 359
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=73.93 E-value=42 Score=32.20 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=53.8
Q ss_pred EEEEeCCCCcEEEEEEecc--CCeeeeeceeeEe--eCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCC
Q 019091 212 LYQIDPQTLKVIRKDIVRY--KGREVRNLNELEF--IKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYN 287 (346)
Q Consensus 212 l~vIDp~T~kvi~~I~V~~--~G~pv~~lNELE~--~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~ 287 (346)
+.|.+.+..++.+.++|.. .|..+ --++| .+|+||+= -.+..|+.|||.||+.... -.+.+...+
T Consensus 4 l~f~~~~p~~~~~~~~vtGL~~ge~l---~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~v-g~s~~~~al------ 72 (236)
T PF14339_consen 4 LVFNSDNPAKVTSSVAVTGLAAGESL---VGIDFRPANGQLYGL-GSTGRLYTINPATGAATPV-GASPLTVAL------ 72 (236)
T ss_pred EEEeCCCCcceeccEEeecccCCCeE---EEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEe-ecccccccc------
Confidence 4433445566777777754 22221 12443 48999975 3578999999999985433 001222111
Q ss_pred CCceeeEEEEeCCCCEEEEecCC
Q 019091 288 GIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 288 ~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
.+ ...|+-|+|.-+||-|-+..
T Consensus 73 ~g-~~~gvDFNP~aDRlRvvs~~ 94 (236)
T PF14339_consen 73 SG-TAFGVDFNPAADRLRVVSNT 94 (236)
T ss_pred cC-ceEEEecCcccCcEEEEccC
Confidence 12 27899999999999987653
No 360
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=73.87 E-value=43 Score=34.34 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=77.2
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCC--cEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECC
Q 019091 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg--kv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~ 178 (346)
+++| .-+.+.+..+|+.+.+ -+--++.||+++| ++....-++...|-+++... +...++..-.+|++-+.|..
T Consensus 300 ~ksl-~~i~~~~~~~Ll~~gs--sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 300 NKSL-NCISYSPLSKLLASGS--SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred Ccce-eEeecccccceeeecC--CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 5666 6788888778888876 5668999999974 67777777777788877775 45677888889999999987
Q ss_pred CCc-EEEEEecCCCceeEEeeCCCEEEEECC-CCeEEEEe
Q 019091 179 NLN-KLEEFTHQMKDGWGLATDGKVLFGSDG-SSMLYQID 216 (346)
Q Consensus 179 tl~-~i~ti~~~~peGwGLt~Dg~~LyvSdG-s~~l~vID 216 (346)
+-+ .+-.|.-..--=..++.....+++|-| +++|.+.-
T Consensus 377 S~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 377 STKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred cCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 665 666665320011123334555677766 66776654
No 361
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=73.23 E-value=32 Score=36.69 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=62.2
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE--EeeCCEEEEEECCCCcEEE
Q 019091 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV--TWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l--tw~~~~v~V~D~~tl~~i~ 184 (346)
.-+.++++++ +-+.-| |=.+.+.++|++ |+++-..+-+++. ..=..+.|+.|.++ ....+.+-|+|..+.+++.
T Consensus 274 hdv~W~~s~~EF~VvyG-fMPAkvtifnlr-~~~v~df~egpRN-~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~ 350 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYG-FMPAKVTIFNLR-GKPVFDFPEGPRN-TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA 350 (566)
T ss_pred eEEEECCCCCEEEEEEe-cccceEEEEcCC-CCEeEeCCCCCcc-ceEECCCCCEEEEeecCCCCCceEEEeccchhhcc
Confidence 3445555553 444444 456788888887 5566555544432 11123345555555 2457899999999999999
Q ss_pred EEecCCCceeEEeeCCCEEEEECC
Q 019091 185 EFTHQMKDGWGLATDGKVLFGSDG 208 (346)
Q Consensus 185 ti~~~~peGwGLt~Dg~~LyvSdG 208 (346)
++......=..-+|||++++++--
T Consensus 351 ~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 351 KFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ccccCCceEEEEcCCCcEEEEEec
Confidence 998752233346899999999764
No 362
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.66 E-value=9.5 Score=25.47 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=25.2
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 019091 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~ 189 (346)
+++|+. -.++.++.+|++|++++-++..+
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEEeeeCC
Confidence 467888 66799999999999999999875
No 363
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=72.58 E-value=99 Score=33.15 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=67.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEE--eCCEEEE-EEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCC
Q 019091 125 YGRSSVRRVALETGKVEAINQMEG-SYFGEGLTL--LGEKLFQ-VTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDG 200 (346)
Q Consensus 125 yg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~--~g~~LY~-ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg 200 (346)
||++.++.++++.. ...+++.. +| -..++. .+.+.-+ --..-.++.+||. ...++-.|+.+-..-.=++|-|
T Consensus 248 YGEq~Lyll~t~g~--s~~V~L~k~GP-Vhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 248 YGEQTLYLLATQGE--SVSVPLLKEGP-VHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFPEGPRNTAFFNPHG 323 (566)
T ss_pred cccceEEEEEecCc--eEEEecCCCCC-ceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCCCCCccceEECCCC
Confidence 78889999988832 23444442 22 122222 2233222 2466788999995 4777777776522333468889
Q ss_pred CEEEEEC-C--CCeEEEEeCCCCcEEEEEEecc
Q 019091 201 KVLFGSD-G--SSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 201 ~~LyvSd-G--s~~l~vIDp~T~kvi~~I~V~~ 230 (346)
+.+.++= | .+.+-|+|..++|.+.++.+.+
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~ 356 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN 356 (566)
T ss_pred CEEEEeecCCCCCceEEEeccchhhccccccCC
Confidence 9888764 4 8899999999999999998854
No 364
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=72.42 E-value=35 Score=36.81 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=91.8
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC----eeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS----YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~----~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
++|..+.+|.||+++- + .+..|....=++.+.+.-.+. +-....+.+...+.+.+ ..+...+.+..+++++
T Consensus 293 nsL~~D~dGsLWv~t~--~--giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n-s~g~L~van~stG~~v 367 (671)
T COG3292 293 NSLWLDTDGSLWVGTY--G--GIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN-SIGELMVANGSTGELV 367 (671)
T ss_pred cceeeccCCCEeeecc--C--ceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc-ccceEEEecCCCCcEE
Confidence 7888888899999865 2 566665555444444432211 11111111233444443 3467888999999988
Q ss_pred EEEecCCCceeEEee----CCCEEEEECCCCeEEEEeCCCC-cEEEEEEeccCCeeeeecee-eEeeCCEEEEEecCCCe
Q 019091 184 EEFTHQMKDGWGLAT----DGKVLFGSDGSSMLYQIDPQTL-KVIRKDIVRYKGREVRNLNE-LEFIKGEVWANVWQTDC 257 (346)
Q Consensus 184 ~ti~~~~peGwGLt~----Dg~~LyvSdGs~~l~vIDp~T~-kvi~~I~V~~~G~pv~~lNE-LE~~~G~LyaNv~~sn~ 257 (346)
.++--- -|.-+++ .++.+|+..-.+-|.-+|++++ .+...+ +|.|-...-. +|-.++.+|.- .++-
T Consensus 368 ~sv~q~--Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~----agl~ss~V~aived~dnsLWIG--Ts~G 439 (671)
T COG3292 368 RSVHQL--RGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDED----AGLPSSEVSAIVEDPDNSLWIG--TSGG 439 (671)
T ss_pred EEeeec--cccccchhhhccCCcEEEEecccchhhhccCCcccccccc----cCCcccceeeeeecCCCCEEEe--ccCC
Confidence 884321 2223332 2678888665667778888872 222221 2222221111 34446678865 3788
Q ss_pred EEEEeCCCCeEEEEEECCc
Q 019091 258 IARISHEDGVVLGWVLLPN 276 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~ 276 (346)
|+.+||+.++|...++.+.
T Consensus 440 lvk~~pe~~~v~n~ln~~~ 458 (671)
T COG3292 440 LVKRDPESGRVLNLLNPGS 458 (671)
T ss_pred eEecCccccchhccccccc
Confidence 9999999999999997744
No 365
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.92 E-value=14 Score=24.60 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=25.0
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCc
Q 019091 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPN 276 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~ 276 (346)
|.||+. -....|..+|.+||+++=..+...
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEEEEESSS
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEEeeeCCC
Confidence 578888 458899999999999998887743
No 366
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=70.67 E-value=36 Score=29.95 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=47.6
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEE-----------eCCEEEEE-EeeCCEEEEEECCCCcEEEEEecC
Q 019091 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTL-----------LGEKLFQV-TWLQKTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-----------~g~~LY~l-tw~~~~v~V~D~~tl~~i~ti~~~ 189 (346)
+..|.++|..+|+++..++-++.-|-.|+-. ..+.=|.+ -|.++.+.+.|+.|.+.+.=..++
T Consensus 50 ~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i~L~aFG 124 (135)
T TIGR03054 50 DGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSIELNAFG 124 (135)
T ss_pred CCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEEEEeecC
Confidence 4589999999999999998887777544332 12344555 599999999999999887766654
No 367
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=70.56 E-value=43 Score=35.16 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=54.4
Q ss_pred EEECC--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE-EEecCCCeEEEEeC---CCCeEEEEEECCch
Q 019091 204 FGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW-ANVWQTDCIARISH---EDGVVLGWVLLPNL 277 (346)
Q Consensus 204 yvSdG--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly-aNv~~sn~I~vID~---~TG~Vv~~I~l~~l 277 (346)
|.+.+ .|.||++| +++.++++++=-..|+.++ ..-+.++.+| |+--++|-+.+||. +.-+|++.+..+++
T Consensus 398 W~~~de~~N~vYilD-e~lnvvGkltGl~~gERIY---AvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGf 473 (603)
T COG4880 398 WTSEDEPVNAVYILD-ENLNVVGKLTGLAPGERIY---AVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGF 473 (603)
T ss_pred cccCCCccceeEEEc-CCCcEEEEEeccCCCceEE---EEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCc
Confidence 44444 58999999 6799999887655566554 3456677888 68888999999995 55789999988776
Q ss_pred hh
Q 019091 278 RE 279 (346)
Q Consensus 278 ~~ 279 (346)
..
T Consensus 474 S~ 475 (603)
T COG4880 474 SE 475 (603)
T ss_pred hh
Confidence 53
No 368
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=70.55 E-value=7.8 Score=43.09 Aligned_cols=106 Identities=8% Similarity=0.065 Sum_probs=71.7
Q ss_pred CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeC---CCEEEE--ECCCCeEEEEeCCCCcEEEEEEecc---
Q 019091 159 GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATD---GKVLFG--SDGSSMLYQIDPQTLKVIRKDIVRY--- 230 (346)
Q Consensus 159 g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~D---g~~Lyv--SdGs~~l~vIDp~T~kvi~~I~V~~--- 230 (346)
.+.+|.+. .+.|+||...|+...+....-.-++..++++ |..+|+ ++|+...++ +++|+.-...+....
T Consensus 636 ed~~was~--gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlf-htetl~hlqd~niaT~vt 712 (925)
T KOG3522|consen 636 EDFVWASE--GGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLF-HTETLWHLQDSNIATSVT 712 (925)
T ss_pred hceeeeec--CCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEe-cccccCCccccccCccee
Confidence 34444433 7999999999998888776422477787764 666777 578777777 999877544443322
Q ss_pred CCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 231 KGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 231 ~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
.+-|++ .|--.+|++|. .+.|.|.++.|-.|..-+..
T Consensus 713 ~~lP~~---kllsv~~rl~c----~gl~~V~~~~~l~v~~~v~~ 749 (925)
T KOG3522|consen 713 VDLPFG---KLLSVPGRLWC----QGLLMVLTSLTLLVALPVPR 749 (925)
T ss_pred ecCCCc---ccccCCCcccc----cceeEEeccceeEEEeeeee
Confidence 123443 34445788886 77899999999888777754
No 369
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.54 E-value=9.7 Score=23.93 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCEEEEECCCCeEEEEeCCCCcEEE
Q 019091 200 GKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 200 g~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
+..+|++..++.|+.+|+++++++=
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 4478998888999999999988764
No 370
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=70.10 E-value=44 Score=31.99 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=75.4
Q ss_pred EEEecCCCCcceeEEEecCCEEEEEcCC-CCCCeEEEEECCC----CcEEEEe-cc-CCCeeEEEEEEeCCEEEEEEeeC
Q 019091 97 NEFPHDPRAFTQGLLYAENDTLFESTGL-YGRSSVRRVALET----GKVEAIN-QM-EGSYFGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 97 ~t~phd~~~FTqGL~~~~d~~LyeStGl-yg~s~V~~iDl~T----gkv~~~~-~l-~~~~FgeGit~~g~~LY~ltw~~ 169 (346)
+.++.....|..|=.+.+||+|+.+.|- .|...++.+++.+ .+..... .| .++=++--.++-+++++++--..
T Consensus 59 rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 59 RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 4455667889999999999998877664 2567799999876 2322222 23 23444555666666676665444
Q ss_pred CEEE-EEECCCC-cEEEEEec--------C-CCceeE-EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019091 170 KTGF-IYDQNNL-NKLEEFTH--------Q-MKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 170 ~~v~-V~D~~tl-~~i~ti~~--------~-~peGwG-Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
+-.+ .++++.. .....++. + .=+... |.|||+.++.+|.... ++|+.+.+++++++-
T Consensus 139 ~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 139 NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNTVVRTLPD 207 (243)
T ss_pred CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCeEEeeCCC
Confidence 3333 3333211 11111110 0 012222 6788988888885444 559999988777654
No 371
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=69.84 E-value=1.3e+02 Score=30.53 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=98.9
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeC-CCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccC-Ceee
Q 019091 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATD-GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK-GREV 235 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~D-g~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~-G~pv 235 (346)
...++..-++.+-+||..|++.+..|.+. .-.|.++..+ +-+...|- .+.+|..+|..++..++++.-+.+ |.|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 34555667899999999999999999874 3468887663 55555544 456999999999999999988764 3454
Q ss_pred eeceeeEee-CCEEEE-EecCCC---eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019091 236 RNLNELEFI-KGEVWA-NVWQTD---CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 236 ~~lNELE~~-~G~Lya-Nv~~sn---~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
. -|+.- ++.+.+ +..++. .|+.-|...-+.. ++ .+-++. ..|| --+.|.|....+.+||--
T Consensus 121 ~---~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-------l~-~~~eSH--~DDV-T~lrFHP~~pnlLlSGSv 186 (376)
T KOG1188|consen 121 I---CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-------LR-QLNESH--NDDV-TQLRFHPSDPNLLLSGSV 186 (376)
T ss_pred e---EeeccCcCCeEEeccccccCceEEEEEEeccccch-------hh-hhhhhc--cCcc-eeEEecCCCCCeEEeecc
Confidence 2 12221 345654 333332 2445555554431 11 111211 1223 347899999999999998
Q ss_pred CCcEEEEEEeeccccccCCCchhHHHhhhh
Q 019091 311 WPKLYEINLREMKRERKDGFNVDTIIEQLC 340 (346)
Q Consensus 311 Wp~l~ev~l~~~~~~~~~~~~~~~~~~~~~ 340 (346)
.+-+--..+ +...+|+ .+++-|
T Consensus 187 DGLvnlfD~---~~d~EeD-----aL~~vi 208 (376)
T KOG1188|consen 187 DGLVNLFDT---KKDNEED-----ALLHVI 208 (376)
T ss_pred cceEEeeec---CCCcchh-----hHHHhh
Confidence 886544333 3444444 666665
No 372
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.24 E-value=2.3e+02 Score=33.10 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=120.6
Q ss_pred EEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE---eC---CEEEEEEeeCCEEEEEEC-----
Q 019091 110 LLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL---LG---EKLFQVTWLQKTGFIYDQ----- 177 (346)
Q Consensus 110 L~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~---~g---~~LY~ltw~~~~v~V~D~----- 177 (346)
+.|+|=. .++.+ . +...|.+||.+.++.......+. ++..+++- .| ..|..+.-.++.|-|++.
T Consensus 1070 ~~~hpf~p~i~~a-d--~r~~i~vwd~e~~~~l~~F~n~~-~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAA-D--DRERIRVWDWEKGRLLNGFDNGA-FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred eeecCCCceeEEc-C--CcceEEEEecccCceeccccCCC-CCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4555433 34444 3 57899999999999988876654 22334443 23 335555556777777763
Q ss_pred CCCcEEEEEe-c----CCCceeE--EeeC--CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE--eeCC
Q 019091 178 NNLNKLEEFT-H----QMKDGWG--LATD--GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE--FIKG 246 (346)
Q Consensus 178 ~tl~~i~ti~-~----~~peGwG--Lt~D--g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE--~~~G 246 (346)
++.+.+.... . ....|-| ++.. .++|+++-+...|.++|+++-++.+.|+.+..--+.. |. ..+|
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa----LS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA----LSADLVHG 1221 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcccee----ecccccCC
Confidence 2334444332 1 1123333 3332 5688888778899999999999999999875422211 22 2257
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCce--eeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDV--LNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~v--lNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
-+.|+-+.+..|-+.|...-.--.-+.+. + +-.++ .+++-+.+.|-.=.|+|-..+.|+..++.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~--R--------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVY--R--------EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceee--c--------ccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 78887777888888887665433333220 1 11122 67788888777778889899988888775
No 373
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=69.19 E-value=14 Score=32.40 Aligned_cols=74 Identities=8% Similarity=-0.039 Sum_probs=51.8
Q ss_pred CEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-------CCE-EEEEecCCCeEEEEeCCCCeEEEE
Q 019091 201 KVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-------KGE-VWANVWQTDCIARISHEDGVVLGW 271 (346)
Q Consensus 201 ~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-------~G~-LyaNv~~sn~I~vID~~TG~Vv~~ 271 (346)
..|...| .+..+.+.|..+++++.+++-+++|.-..-+.-|+-. ..- .-.+-|....++.+||.||+.+.-
T Consensus 41 r~l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i~L 120 (135)
T TIGR03054 41 LWLVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSIEL 120 (135)
T ss_pred EEEEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEEEE
Confidence 3456667 4889999999999999999998876433222222211 122 335778888999999999998766
Q ss_pred EEC
Q 019091 272 VLL 274 (346)
Q Consensus 272 I~l 274 (346)
..+
T Consensus 121 ~aF 123 (135)
T TIGR03054 121 NAF 123 (135)
T ss_pred eec
Confidence 644
No 374
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=68.42 E-value=93 Score=32.03 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=83.3
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCc--EE-E
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN--KL-E 184 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~--~i-~ 184 (346)
.-+.+.+.+.+|-+ + =+.+|.+||+.+|+.+.++.-+...+-...... .+|.++--.+..+-++||.+.. .+ .
T Consensus 264 s~V~w~d~~v~yS~-S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 264 SSVVWSDATVIYSV-S--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred eeEEEcCCCceEee-c--ccceEEEEEeecccceeeeecCcceeEeecccc-cceeeecCCCCceeecCCCCCCCceeEE
Confidence 45677665567744 4 357999999999999999888887766433332 4566666778889999998762 21 1
Q ss_pred EEecCCCceeE----EeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCC
Q 019091 185 EFTHQMKDGWG----LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTD 256 (346)
Q Consensus 185 ti~~~~peGwG----Lt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn 256 (346)
++- + -.+|. -+|-....++|= -++++.++|..+-+- |++ .+.-.+++|++..|...
T Consensus 340 s~~-g-H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-----------ply---dI~~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 340 SLI-G-HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-----------PLY---DIAGHNDKVLSVDWNEG 400 (423)
T ss_pred eee-c-chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-----------cce---eeccCCceEEEEeccCC
Confidence 222 2 12343 345677888876 488999999876441 221 12233557887777433
No 375
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=67.98 E-value=30 Score=37.62 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=60.7
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe------ccCC---CeeEE-EEEE--eCCEEEEEEeeCCEEEEEE
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN------QMEG---SYFGE-GLTL--LGEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~------~l~~---~~Fge-Git~--~g~~LY~ltw~~~~v~V~D 176 (346)
+++| .|+..+.|+|. +++.|.+||+.+.....+. +++- +-.|. -+.+ .|.+||+.=- ++.||.||
T Consensus 223 vv~f-kDe~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~yn 299 (720)
T KOG0321|consen 223 VVLF-KDESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYN 299 (720)
T ss_pred EEEE-eccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEe
Confidence 5555 46777778785 6899999999986543332 2211 12221 1222 2578887632 99999999
Q ss_pred CCCCcE----------EEEEecCCCceeEEeeCCCEEEE--ECCCCeEEEEe
Q 019091 177 QNNLNK----------LEEFTHQMKDGWGLATDGKVLFG--SDGSSMLYQID 216 (346)
Q Consensus 177 ~~tl~~----------i~ti~~~~peGwGLt~Dg~~Lyv--SdGs~~l~vID 216 (346)
..++.+ ..+|-+.. -+++|+..|.- +|+...+++++
T Consensus 300 m~s~s~sP~~~~sg~~~~sf~vks----~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 300 MRSLSISPVAEFSGKLNSSFYVKS----ELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred ccccCcCchhhccCcccceeeeee----ecCCCCceEeccCCCcceeeeeec
Confidence 877643 22332221 36788887665 34555666665
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=67.79 E-value=1.8e+02 Score=31.34 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=19.0
Q ss_pred eeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019091 291 VLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 291 vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
....++|..++..+-.+...-..+|+|.+.-
T Consensus 498 ~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG 528 (591)
T PRK13616 498 TAVSLDWRTGDSLVVGRSDPEHPVWYVNLDG 528 (591)
T ss_pred ccccceEecCCEEEEEecCCCCceEEEecCC
Confidence 3456889987774433333334588888763
No 377
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=66.32 E-value=1.6e+02 Score=30.01 Aligned_cols=175 Identities=17% Similarity=0.241 Sum_probs=103.0
Q ss_pred eeeEEEEEEecCCCCcceeEEEec----CC-EEEEEcCCCCCCeEEEEECC-CC--cEEEEeccCCCeeEEEEEEeCCEE
Q 019091 91 YTIQVVNEFPHDPRAFTQGLLYAE----ND-TLFESTGLYGRSSVRRVALE-TG--KVEAINQMEGSYFGEGLTLLGEKL 162 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~----d~-~LyeStGlyg~s~V~~iDl~-Tg--kv~~~~~l~~~~FgeGit~~g~~L 162 (346)
+.|+..+.+--|++.-.-|.+|.+ |. .++.+.| .++|++|.-. .| ..++.+.-+ -....+
T Consensus 25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG---~~rvtiy~c~~d~~ir~lq~y~D~---------d~~Esf 92 (385)
T KOG1034|consen 25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG---GNRVTIYECPGDGGIRLLQSYADE---------DHDESF 92 (385)
T ss_pred cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC---CcEEEEEEECCccceeeeeeccCC---------CCCcce
Confidence 357777777655544345777751 22 4555544 4677777533 23 111111111 012457
Q ss_pred EEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019091 163 FQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 163 Y~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
|..+|- ||.+| ++-+.+.-| -.-|++||+.+.+..+.+.- +|. .+|||
T Consensus 93 ytcsw~------yd~~~--------------------~~p~la~~G~~GvIrVid~~~~~~~~~~~g--hG~---sINei 141 (385)
T KOG1034|consen 93 YTCSWS------YDSNT--------------------GNPFLAAGGYLGVIRVIDVVSGQCSKNYRG--HGG---SINEI 141 (385)
T ss_pred EEEEEE------ecCCC--------------------CCeeEEeecceeEEEEEecchhhhccceec--cCc---cchhh
Confidence 777764 55444 222233333 45799999999998877654 333 45788
Q ss_pred EeeCC--EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 242 EFIKG--EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 242 E~~~G--~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
-+... .|.+..-.+..|-.=|.+++.++..+ +-.... ...||. |-|+++++++.- +.-..+|-+=+|
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf---GG~egH------rdeVLS-vD~~~~gd~i~S-cGmDhslk~W~l 210 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF---GGVEGH------RDEVLS-VDFSLDGDRIAS-CGMDHSLKLWRL 210 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEe---cccccc------cCcEEE-EEEcCCCCeeec-cCCcceEEEEec
Confidence 76644 37777777778888899999999888 222211 134664 999999996554 444555444444
No 378
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=66.22 E-value=46 Score=36.33 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=46.7
Q ss_pred CCEEEEECCCCeEEEEeCCCCcEEEEEEec--cCCeee----eecee-eEeeC------CEEEEEecCCCeEEEEeCCCC
Q 019091 200 GKVLFGSDGSSMLYQIDPQTLKVIRKDIVR--YKGREV----RNLNE-LEFIK------GEVWANVWQTDCIARISHEDG 266 (346)
Q Consensus 200 g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~--~~G~pv----~~lNE-LE~~~------G~LyaNv~~sn~I~vID~~TG 266 (346)
|+.||+.---|.++-+|++|++++=+-.-. .+-.+. .-+|- -+..+ .+||-+.- +-+++.||.+||
T Consensus 214 gdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~-DarlIALdA~tG 292 (773)
T COG4993 214 GDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTA-DARLIALDADTG 292 (773)
T ss_pred CCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecC-CceEEEEeCCCC
Confidence 789999888999999999999986433221 111111 11111 11112 25887653 667999999999
Q ss_pred eEEEEE
Q 019091 267 VVLGWV 272 (346)
Q Consensus 267 ~Vv~~I 272 (346)
+|....
T Consensus 293 kvc~~F 298 (773)
T COG4993 293 KVCWSF 298 (773)
T ss_pred cEehee
Confidence 998775
No 379
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=66.05 E-value=98 Score=31.01 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=73.4
Q ss_pred EEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEe---ccCCCeeEEEEEEe-CCEEEEEE--eeC
Q 019091 97 NEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN---QMEGSYFGEGLTLL-GEKLFQVT--WLQ 169 (346)
Q Consensus 97 ~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~---~l~~~~FgeGit~~-g~~LY~lt--w~~ 169 (346)
+-|.||..-| -++|..++ .+|.|-| ++.+|++||+..-+---.+ +-+..+.- -++.. .+.=|++| -.+
T Consensus 191 QLIAHDKEV~--DIaf~~~s~~~FASvg--aDGSvRmFDLR~leHSTIIYE~p~~~~pLl-RLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 191 QLIAHDKEVY--DIAFLKGSRDVFASVG--ADGSVRMFDLRSLEHSTIIYEDPSPSTPLL-RLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred EEEecCccee--EEEeccCccceEEEec--CCCcEEEEEecccccceEEecCCCCCCcce-eeccCcCCchHHhhhhcCC
Confidence 3468998886 89998766 5999999 6679999999976532222 22221111 01111 13345554 457
Q ss_pred CEEEEEECC-CCcEEEEEec-C-CCceeEEeeCCCEEEEECC-CCeEEEEeCCC
Q 019091 170 KTGFIYDQN-NLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQT 219 (346)
Q Consensus 170 ~~v~V~D~~-tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T 219 (346)
++|.++|.. -...+.++.. + .-.|.+-+|-...-+-|-| +.++.++|...
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 889999964 3445555542 2 2356666676666666666 55888899764
No 380
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=65.85 E-value=18 Score=22.62 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=22.7
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019091 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
.++.+|+.+. ++.++.+|+++++++-++
T Consensus 5 ~~~~v~~~~~-~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGST-DGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcC-CCEEEEEEcccCcEEEEc
Confidence 4568888874 699999999999888765
No 381
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=65.77 E-value=17 Score=23.64 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=24.2
Q ss_pred CCCceeEEeeCCCEEEEEC-CCCeEEEEeCC
Q 019091 189 QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ 218 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~ 218 (346)
..|.|.++++++++||-+| ....|+..+-.
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 3578999999999999999 56777777654
No 382
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=65.43 E-value=1.1e+02 Score=28.15 Aligned_cols=124 Identities=12% Similarity=0.142 Sum_probs=83.2
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC----------eeEEEEEEeCCEEE
Q 019091 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS----------YFGEGLTLLGEKLF 163 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~----------~FgeGit~~g~~LY 163 (346)
+.++++..+..+ ..+.+. ++.+.+++. .....+|+.++....-..++.. ....++...++.-|
T Consensus 130 ~~~ke~~lp~~~--~~i~~~-~~~i~v~~~----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 202 (275)
T PF00780_consen 130 KLLKEISLPDPP--SSIAFL-GNKICVGTS----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEF 202 (275)
T ss_pred ceeEEEEcCCCc--EEEEEe-CCEEEEEeC----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceE
Confidence 788889887777 699998 478888864 4788999999887655544321 23455555553344
Q ss_pred EEEeeCCEEEEEECCCCcEEE--EEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEec
Q 019091 164 QVTWLQKTGFIYDQNNLNKLE--EFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 164 ~ltw~~~~v~V~D~~tl~~i~--ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~ 229 (346)
.+. .++.++.+|.+ ++..+ ++.-+ .|. .+....-+|++-. ++.|.+.+..+++.+.+|...
T Consensus 203 Ll~-~~~~g~fv~~~-G~~~r~~~i~W~~~p~--~~~~~~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 203 LLC-YDNIGVFVNKN-GEPSRKSTIQWSSAPQ--SVAYSSPYLIAFS-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEE-ecceEEEEcCC-CCcCcccEEEcCCchh--EEEEECCEEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence 444 36778888864 44443 44443 344 4444566887754 366999999999999888863
No 383
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=64.70 E-value=1.1e+02 Score=27.75 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=59.4
Q ss_pred eEEEecCCEEEEEcC-CCCC--CeEEEEECCCCcEEEEeccCCCee----EEEEEEeCCEEEEEEeeC----CEEEEEE-
Q 019091 109 GLLYAENDTLFESTG-LYGR--SSVRRVALETGKVEAINQMEGSYF----GEGLTLLGEKLFQVTWLQ----KTGFIYD- 176 (346)
Q Consensus 109 GL~~~~d~~LyeStG-lyg~--s~V~~iDl~Tgkv~~~~~l~~~~F----geGit~~g~~LY~ltw~~----~~v~V~D- 176 (346)
|+.+ +|.||--+. ..+. ..|..+|+.+.+....+++|.... .-.+...+++|.++.... =.+++.+
T Consensus 98 ~v~~--~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d 175 (230)
T TIGR01640 98 GVCI--NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLND 175 (230)
T ss_pred eEEE--CCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEECC
Confidence 5544 576654332 1111 279999999987664466654321 234566678888776532 2677775
Q ss_pred C--CCCcEEEEEecC----CCc---eeEEeeCCCEEEEECC-CCe-EEEEeCCC
Q 019091 177 Q--NNLNKLEEFTHQ----MKD---GWGLATDGKVLFGSDG-SSM-LYQIDPQT 219 (346)
Q Consensus 177 ~--~tl~~i~ti~~~----~pe---GwGLt~Dg~~LyvSdG-s~~-l~vIDp~T 219 (346)
. +...++-+|+.. ... ..+++.+|+.+++.+. ... |...|++|
T Consensus 176 ~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~ 229 (230)
T TIGR01640 176 AGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE 229 (230)
T ss_pred CCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence 2 223433444421 111 3456666666666653 223 66667665
No 384
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.25 E-value=69 Score=31.65 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=24.2
Q ss_pred eEEEEEEeCCEEEEEEeeCCEEEEEEC
Q 019091 151 FGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 151 FgeGit~~g~~LY~ltw~~~~v~V~D~ 177 (346)
=+||+++.++..++.-.++|++++|-.
T Consensus 136 DaEGLAvrdG~~~VsfEr~hRI~iyp~ 162 (340)
T COG4246 136 DAEGLAVRDGDALVSFERDHRIWIYPV 162 (340)
T ss_pred ccccceEecCceEEEeeccceeEEecc
Confidence 379999999999999999999999864
No 385
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=63.10 E-value=53 Score=33.79 Aligned_cols=119 Identities=14% Similarity=0.196 Sum_probs=73.1
Q ss_pred EEEecCCCCcc------eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEE---EEEeCCE-EEEE
Q 019091 97 NEFPHDPRAFT------QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG---LTLLGEK-LFQV 165 (346)
Q Consensus 97 ~t~phd~~~FT------qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeG---it~~g~~-LY~l 165 (346)
....+|+.||+ ++|..+|.. .+|-|++ -+.+|++||..++.-...+..... +-- |+..++. +.+.
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh--~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAH--NSDVNVISWNRREPLLAS 319 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeecc--CCceeeEEccCCcceeee
Confidence 34455666664 678888866 5888888 455999999999954333333211 111 2222222 3444
Q ss_pred EeeCCEEEEEECCCC---cEEEEEecC-CC-ceeEEeeCCCEEEEEC-CCCeEEEEeCCC
Q 019091 166 TWLQKTGFIYDQNNL---NKLEEFTHQ-MK-DGWGLATDGKVLFGSD-GSSMLYQIDPQT 219 (346)
Q Consensus 166 tw~~~~v~V~D~~tl---~~i~ti~~~-~p-eGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T 219 (346)
--.++..-|.|..++ +.+++|++- .| .-..-.|.....+++- ++++|.++|...
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 566788899998765 566788763 11 2233455556666655 589999999764
No 386
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=62.78 E-value=79 Score=32.07 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=62.2
Q ss_pred CCeEEEEECCCCcEEEEe----ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE-ec-CCCceeEEeeCC
Q 019091 127 RSSVRRVALETGKVEAIN----QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF-TH-QMKDGWGLATDG 200 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~----~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti-~~-~~peGwGLt~Dg 200 (346)
+-++.-.|..||+-.-+. .+++--=|.=+...++.+++.+-.++.+.++|+.|++...-- .. ...+|-.+.++-
T Consensus 221 S~~Lvg~d~~tgk~~yR~t~Svrip~~~~gDiV~~~~~~~~~v~~~~~~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~ 300 (355)
T COG1499 221 SEKLVGRDRFTGKRVYRFTYSVRIPEFRPGDIVSVRGRQLVLVRSIGKGIVVLDLETGEPVEITWSVYKRNEGKVAVKEP 300 (355)
T ss_pred cceeEEEecCCCceEEEEEEEEECCCCCCCCEEEECCCeEEEEEEecCceEEEecccCCccccChhhcccCcceeeeccc
Confidence 346666777787644333 444322244345556688888999999999999999443321 12 234556666554
Q ss_pred --C-EEEEECCCCeEEEEeCCCCcEE
Q 019091 201 --K-VLFGSDGSSMLYQIDPQTLKVI 223 (346)
Q Consensus 201 --~-~LyvSdGs~~l~vIDp~T~kvi 223 (346)
+ ..++|...+.+.+.|++|++..
T Consensus 301 ~~~~~~vvs~~~~~~~v~d~et~e~~ 326 (355)
T COG1499 301 RLKKAVVVSRDPSAIQVLDPETYEAR 326 (355)
T ss_pred cceEEEEEecCCCceEEEecceEEEE
Confidence 3 4556777778999999887754
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.26 E-value=1.1e+02 Score=33.01 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC--------CEEEEEEeeCCEEEEEECCCCcE--E---
Q 019091 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--------EKLFQVTWLQKTGFIYDQNNLNK--L--- 183 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g--------~~LY~ltw~~~~v~V~D~~tl~~--i--- 183 (346)
.||-+.+ .+..|+..|.++||++...++....=-.-++.++ ..|. --.++.+|.+|+.-... +
T Consensus 347 lil~~~~--~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~Tlv--GLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 347 LILMDGG--EQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLV--GLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred eEeeCCC--CcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEE--eecCCceEEecccccCcceeeee
Confidence 3455544 6789999999999999999886541111122222 1222 22368888899862211 1
Q ss_pred --EEEecCCC-ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEE
Q 019091 184 --EEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIAR 260 (346)
Q Consensus 184 --~ti~~~~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~v 260 (346)
+.+..+.. .-.+-|.+|..+..|. ...|...|- .++.- +.....-|.|+.++- ..+.+..|.+++ ..++.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~-~GdIRLYdr-i~~~A-KTAlPgLG~~I~hVd-vtadGKwil~Tc--~tyLlL 496 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSL-KGDIRLYDR-IGRRA-KTALPGLGDAIKHVD-VTADGKWILATC--KTYLLL 496 (644)
T ss_pred eccccccccccceeeecCCceEEEeec-CCcEEeehh-hhhhh-hhcccccCCceeeEE-eeccCcEEEEec--ccEEEE
Confidence 11221111 1122344555555565 335666664 33322 223323456666541 222334688887 788999
Q ss_pred EeCC
Q 019091 261 ISHE 264 (346)
Q Consensus 261 ID~~ 264 (346)
||+.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 9874
No 388
>PTZ00486 apyrase Superfamily; Provisional
Probab=59.95 E-value=54 Score=33.21 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=46.7
Q ss_pred ceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE--ecCCC
Q 019091 238 LNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV--TGKLW 311 (346)
Q Consensus 238 lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV--TGK~W 311 (346)
|.||-..||+||.-.=.+..|..|+.+.++++-|+=+++--+.. ..+.--.=.+. .+++||| .||.|
T Consensus 117 LSELv~FngkLys~DDrTGiVy~i~~~~~~~~PwvIL~dGdG~~-----~kGfK~EWaTV--Kd~~LyVGs~Gkew 185 (352)
T PTZ00486 117 LSELVSFNGKLYGFDDRTGIVYEIDIDKKKAYPRHILSDGNGNS-----DKGMKIEWATV--YDDKLYVGSIGKEF 185 (352)
T ss_pred hhhhheeCCEEEEEeCCceEEEEEEcCCCcEeeEEEEecCCCCC-----CCCcceeeEEE--ECCEEEEeccccee
Confidence 45888889999998888999999998888899888664432210 01111111223 5679999 99999
No 389
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=59.82 E-value=44 Score=32.43 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=37.3
Q ss_pred CEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee-Ee--eCCEEEEEecCCCeEEEE
Q 019091 201 KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL-EF--IKGEVWANVWQTDCIARI 261 (346)
Q Consensus 201 ~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL-E~--~~G~LyaNv~~sn~I~vI 261 (346)
..|++.-.+..|+++||+.|++..++.+.. -|+. +.-. .| +|.+|+|++- .+.|..|
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lps--vPv~-i~~~G~~devdyRI~Va~R-dg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPS--VPVF-ISVSGQYDEVDYRIVVACR-DGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCC--CceE-EEEEeeeeccceEEEEEeC-CCEEEEE
Confidence 467776678999999999999999999964 3442 1111 12 3456777663 4444443
No 390
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=59.70 E-value=1.8e+02 Score=28.57 Aligned_cols=167 Identities=13% Similarity=0.025 Sum_probs=99.6
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-------EE-EEe-------ccCCCeeEEEEE
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-------VE-AIN-------QMEGSYFGEGLT 156 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-------v~-~~~-------~l~~~~FgeGit 156 (346)
...|+.+-.||...+ -+.|. +.++.|+| +..|+-|.-+... .. ... ++| +.-+.=+.
T Consensus 52 k~~iv~eqahdgpiy--~~~f~--d~~Lls~g---dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evP-eINam~ld 123 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIY--YLAFH--DDFLLSGG---DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVP-EINAMWLD 123 (325)
T ss_pred CcceeeccccCCCee--eeeee--hhheeecc---CceEEEeeehhhhhhccchhhhhhcCccccCcccCC-ccceeEec
Confidence 467777788887775 77776 34445555 3478777543211 11 111 122 22232233
Q ss_pred EeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCc--eeEE-eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCe
Q 019091 157 LLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD--GWGL-ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGR 233 (346)
Q Consensus 157 ~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~pe--GwGL-t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~ 233 (346)
+..+-++.+- .+..++-+|.++++...++.--.-+ -... ...++.|=-+ .+.++.++|.+|.|-+..|.+.++..
T Consensus 124 P~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~-EDGtvRvWd~kt~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 124 PSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA-EDGTVRVWDTKTQKHVSMIEPYKNPN 201 (325)
T ss_pred cCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC-CCccEEEEeccccceeEEeccccChh
Confidence 3334455544 7888999999999999988632111 1111 2234433222 37799999999999999999976421
Q ss_pred eeeeceeeEeeC---------CEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 234 EVRNLNELEFIK---------GEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 234 pv~~lNELE~~~---------G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
-|-++. .+=|.-+.+...++.-...+-+.+.++++
T Consensus 202 ------~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 202 ------LLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ------hcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEec
Confidence 122222 23455566677788888888888888866
No 391
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.11 E-value=18 Score=38.94 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=74.5
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEE--E--eCCEEEEEE-eeCCEEEEEECCCCcEE
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLT--L--LGEKLFQVT-WLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit--~--~g~~LY~lt-w~~~~v~V~D~~tl~~i 183 (346)
-+.|-.|.+-.+|+. +.|+.||+--|+.+.++.-.++.-+.|.- + ....+..+- -.+.+|-.+|....+-+
T Consensus 789 ~igfL~~lr~i~ScD----~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 789 DIGFLADLRSIASCD----GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred ceeeeeccceeeecc----CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce
Confidence 344443344445543 48999999999888766433322111111 1 124455553 56788999999999888
Q ss_pred EEEecC---CCce----eEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEE
Q 019091 184 EEFTHQ---MKDG----WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (346)
Q Consensus 184 ~ti~~~---~peG----wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I 226 (346)
-+..+- .|.+ .++.+.|++|-+.-.+..|.++|+.|++++..+
T Consensus 865 ~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 865 CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 887752 3333 346677888877666789999999999998754
No 392
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=58.93 E-value=58 Score=35.37 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=71.4
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEecc---CCCeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCc
Q 019091 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQM---EGSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l---~~~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
.-+..+..|. |-...+..+.-+|.+.++..++.. .++ .+.+ .-++.++ ..+||+| .+.|-+||....+
T Consensus 525 ~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--~PF~kskG~v--q~v~FHPs~p~lfVaT--q~~vRiYdL~kqe 598 (733)
T KOG0650|consen 525 RQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--SPFRKSKGLV--QRVKFHPSKPYLFVAT--QRSVRIYDLSKQE 598 (733)
T ss_pred ceeeeecCCceEEEeccCCCcceEEEEeccccccc--CchhhcCCce--eEEEecCCCceEEEEe--ccceEEEehhHHH
Confidence 4566665554 333334346667777777766543 222 2222 2334444 5678887 7889999999888
Q ss_pred EEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCC
Q 019091 182 KLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQ 218 (346)
Q Consensus 182 ~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~ 218 (346)
++++.-.+ .-..+.+++.|+.|++..-++++-++|..
T Consensus 599 lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 599 LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 88887665 23566788999999998888999999964
No 393
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=58.29 E-value=1.7e+02 Score=28.97 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=80.1
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecC------CCceeEEeeCCCEE---EEECCCC---eEEEEeCCCCcEEEEEEe
Q 019091 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQ------MKDGWGLATDGKVL---FGSDGSS---MLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~------~peGwGLt~Dg~~L---yvSdGs~---~l~vIDp~T~kvi~~I~V 228 (346)
-+.++|.+..-+.|||. +++++..++.+ ..+|.-|- |+.+ -.||.++ .+|.|||++..+. .|.=
T Consensus 68 S~vItt~Kk~Gl~VYDL-sGkqLqs~~~Gk~NNVDLrygF~Lg--G~~idiaaASdR~~~~i~~y~Idp~~~~L~-sitD 143 (364)
T COG4247 68 SLVITTVKKAGLRVYDL-SGKQLQSVNPGKYNNVDLRYGFQLG--GQSIDIAAASDRQNDKIVFYKIDPNPQYLE-SITD 143 (364)
T ss_pred ceEEEeeccCCeEEEec-CCCeeeecCCCcccccccccCcccC--CeEEEEEecccccCCeEEEEEeCCCcccee-eccC
Confidence 35667777777888885 57777777644 12333222 4432 3377644 5788999985543 3322
Q ss_pred ccCCeeee-ecee---eEee----CC--EEEEEecCCC--eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEE
Q 019091 229 RYKGREVR-NLNE---LEFI----KG--EVWANVWQTD--CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIA 296 (346)
Q Consensus 229 ~~~G~pv~-~lNE---LE~~----~G--~LyaNv~~sn--~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA 296 (346)
+. .|.. .+.+ |... -| ++|||--+.+ .-..||...|+|.+..-- +++ -...-.|+.
T Consensus 144 ~n--~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR-~fk---------~~tQTEG~V 211 (364)
T COG4247 144 SN--APYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVR-QFK---------IPTQTEGMV 211 (364)
T ss_pred CC--CccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeE-eee---------cCCccccee
Confidence 21 1211 0000 2111 13 5788876543 356899999998766511 111 112447888
Q ss_pred EeCCCCEEEEecCCCCcEEEEE
Q 019091 297 WDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 297 ~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
.|.+...|||+-.+ --|++.+
T Consensus 212 aDdEtG~LYIaeEd-vaiWK~~ 232 (364)
T COG4247 212 ADDETGFLYIAEED-VAIWKYE 232 (364)
T ss_pred eccccceEEEeecc-ceeeecc
Confidence 89999999998543 3344443
No 394
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=57.16 E-value=13 Score=44.86 Aligned_cols=81 Identities=23% Similarity=0.253 Sum_probs=59.9
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019091 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
-||..+ .-|++.|..+|+.|.|+.| .|-.||....+++...+- ++-...|+.---++.+-+++...
T Consensus 2334 ~H~~ga--T~l~~~P~~qllisggr~G--~v~l~D~rqrql~h~~~~----------~~~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2334 CHDGGA--TVLAYAPKHQLLISGGRKG--EVCLFDIRQRQLRHTFQA----------LDTREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred ecCCCc--eEEEEcCcceEEEecCCcC--cEEEeehHHHHHHHHhhh----------hhhhheeeccCcccceEEEEccc
Confidence 466666 5789999889999999766 899999999887766643 22344555555567777888888
Q ss_pred CcEEEEEecC-CCcee
Q 019091 180 LNKLEEFTHQ-MKDGW 194 (346)
Q Consensus 180 l~~i~ti~~~-~peGw 194 (346)
...++++|.+ +..|.
T Consensus 2400 ~~ll~~~p~e~ak~gf 2415 (2439)
T KOG1064|consen 2400 FGLLHTFPSEHAKQGF 2415 (2439)
T ss_pred cchhhcCchhhcccch
Confidence 8999999875 34444
No 395
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=57.13 E-value=2.3e+02 Score=28.87 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=66.1
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEec-CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeecee
Q 019091 162 LFQVTWLQKTGFIYDQNNLNKLEEFTH-QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 162 LY~ltw~~~~v~V~D~~tl~~i~ti~~-~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE 240 (346)
+.+..-.+..++++|.+..+. ++. +.--...++|+|+.+-.-+.++.++++...-.+....+.++....|..
T Consensus 192 ~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~---- 264 (410)
T PF04841_consen 192 VEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQ---- 264 (410)
T ss_pred eEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcE----
Confidence 344444567778777766533 221 112445788999976443446678888865555666777765455643
Q ss_pred eEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019091 241 LEFIKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 241 LE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
|+|-+...-+-.| .+.|..|.+....+.-+++-
T Consensus 265 ~~WCG~dav~l~~-~~~l~lvg~~~~~~~~~~~~ 297 (410)
T PF04841_consen 265 MAWCGNDAVVLSW-EDELLLVGPDGDSISFWYDG 297 (410)
T ss_pred EEEECCCcEEEEe-CCEEEEECCCCCceEEeccC
Confidence 7777655444445 78899999888877666643
No 396
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=56.79 E-value=65 Score=32.00 Aligned_cols=147 Identities=11% Similarity=0.120 Sum_probs=86.5
Q ss_pred CCEEEEEcCCCC----CCeEEEEECCCCcEE---EEeccCCCeeEEEEEEeCCEEEE-------EEeeCCEEEEEECCCC
Q 019091 115 NDTLFESTGLYG----RSSVRRVALETGKVE---AINQMEGSYFGEGLTLLGEKLFQ-------VTWLQKTGFIYDQNNL 180 (346)
Q Consensus 115 d~~LyeStGlyg----~s~V~~iDl~Tgkv~---~~~~l~~~~FgeGit~~g~~LY~-------ltw~~~~v~V~D~~tl 180 (346)
++++|+=.|+.+ -+.+..+|++|.+-. -.-.+|+.-=|+...+.|+..|+ ++..++.+.++|.+|.
T Consensus 88 ~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~Tm 167 (392)
T KOG4693|consen 88 QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATM 167 (392)
T ss_pred cceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccce
Confidence 467777777644 267899999997532 12234555456777778888876 4556788999887755
Q ss_pred --cEEEEEecCCCceeE-Ee---eCCCEEEE------------ECC---CCeEEEEeCCCCcEEEEEEecc--CCeeeee
Q 019091 181 --NKLEEFTHQMKDGWG-LA---TDGKVLFG------------SDG---SSMLYQIDPQTLKVIRKDIVRY--KGREVRN 237 (346)
Q Consensus 181 --~~i~ti~~~~peGwG-Lt---~Dg~~Lyv------------SdG---s~~l~vIDp~T~kvi~~I~V~~--~G~pv~~ 237 (346)
+.+.+.-. |.-|- +. --+...|+ |+. .++|..+|.+|..-.+.-+.+. .|+.-+
T Consensus 168 tWr~~~Tkg~--PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSH- 244 (392)
T KOG4693|consen 168 TWREMHTKGD--PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSH- 244 (392)
T ss_pred eeeehhccCC--CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccccc-
Confidence 44444432 33332 11 11234444 331 5789999999988776644332 222211
Q ss_pred ceeeEeeCCEEEEE-------ecCCCeEEEEeCCCC
Q 019091 238 LNELEFIKGEVWAN-------VWQTDCIARISHEDG 266 (346)
Q Consensus 238 lNELE~~~G~LyaN-------v~~sn~I~vID~~TG 266 (346)
..=..||++|+= +-.=|++...||.|-
T Consensus 245 --S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~ 278 (392)
T KOG4693|consen 245 --STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTS 278 (392)
T ss_pred --ceEEEcceEEEecccchhhhhhhcceeecccccc
Confidence 111236666641 122478899999884
No 397
>PF13964 Kelch_6: Kelch motif
Probab=56.57 E-value=36 Score=23.55 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCC----CCeEEEEECCCCcEEEEeccC
Q 019091 115 NDTLFESTGLYG----RSSVRRVALETGKVEAINQME 147 (346)
Q Consensus 115 d~~LyeStGlyg----~s~V~~iDl~Tgkv~~~~~l~ 147 (346)
+++||+-.|..+ .+.|.+||++|++-...-+++
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 11 GGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 579999988765 589999999999765544443
No 398
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=56.49 E-value=25 Score=36.97 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=63.2
Q ss_pred EeeCCEEEEEECCCCcEEEEEecC---CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE
Q 019091 166 TWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~~~---~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
.-..+.+-|+-.-+.+.+-+||+- +-.|||+|...+++...--+....+++-.+. +|..-..+=.
T Consensus 70 ~g~~ge~rv~g~psmre~mripvfn~dsatgwg~tneskkvm~~~~d~~~~~lngd~h------------hph~s~tdg~ 137 (637)
T COG4263 70 GGHSGEIRVVGAPSMREMMRIPVFNRDSATGWGQTNESKKVMGELKDQGGLYLNGDLH------------HPHPSFTDGT 137 (637)
T ss_pred CCCccceEEecCcchhhhhccccccccccccccccchhhhhhccccCCCceeecCccC------------CCCccccCCc
Confidence 445778899999999999999973 5689999987776654321222222222221 2211111112
Q ss_pred eeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCch
Q 019091 243 FIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNL 277 (346)
Q Consensus 243 ~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l 277 (346)
|++.++|+|.-....|.+|-.+--++-..|.+++.
T Consensus 138 ydgryl~~ndk~nsrv~rirldvmkcdki~~lpn~ 172 (637)
T COG4263 138 YDGRYLYINDKSNSRVCRIRLDVMKCDKIIQLPNV 172 (637)
T ss_pred ccceEEEeeccccceeEEEEeeEEeecceeecCCc
Confidence 44458999997667788888887777777766543
No 399
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=54.74 E-value=3.8e+02 Score=30.78 Aligned_cols=185 Identities=17% Similarity=0.085 Sum_probs=99.8
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC---CeeEEEEEEeCCEEEEEE-eeCCEEEEEECC-CCcE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTLLGEKLFQVT-WLQKTGFIYDQN-NLNK 182 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~---~~FgeGit~~g~~LY~lt-w~~~~v~V~D~~-tl~~ 182 (346)
+++... +.+++..+. .+.+..+|...+.+...+.-+. -+++.++-...+.+|+.. ---+.+.|.++. +-+.
T Consensus 93 ~~l~~e-~k~i~l~~~---~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 93 AKLFEE-NKKIALVTS---RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cchhhh-cceEEEEEc---CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 566664 567887776 4699999999998888876654 356776767778888763 335667777665 1111
Q ss_pred EEEEecCCCceeEE----eeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCe
Q 019091 183 LEEFTHQMKDGWGL----ATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDC 257 (346)
Q Consensus 183 i~ti~~~~peGwGL----t~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~ 257 (346)
. .-.+ -||.=+ +.||.++.. || +.++..++.+|.++.. +..-|++...-+ .-+.+.+ +-.|..|+
T Consensus 169 ~--~l~G-HeG~iF~i~~s~dg~~i~s~Sd-DRsiRlW~i~s~~~~~---~~~fgHsaRvw~-~~~~~n~--i~t~gedc 238 (967)
T KOG0974|consen 169 I--RLKG-HEGSIFSIVTSLDGRYIASVSD-DRSIRLWPIDSREVLG---CTGFGHSARVWA-CCFLPNR--IITVGEDC 238 (967)
T ss_pred c--eecc-cCCceEEEEEccCCcEEEEEec-CcceeeeecccccccC---cccccccceeEE-EEeccce--eEEeccce
Confidence 1 1112 244433 348888776 55 4455555555666654 333344332111 1111112 12223333
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..+.=...|+++..|+-. .+.---+||++ .+.-+-|||.+...+--..|
T Consensus 239 tcrvW~~~~~~l~~y~~h------------~g~~iw~~~~~-~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 239 TCRVWGVNGTQLEVYDEH------------SGKGIWKIAVP-IGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEEEEecccceehhhhhh------------hhcceeEEEEc-CCceEEEeeccCcchhhhhh
Confidence 333333444444433221 11223457775 45677888888776544444
No 400
>PRK10115 protease 2; Provisional
Probab=54.61 E-value=3.2e+02 Score=29.86 Aligned_cols=159 Identities=9% Similarity=0.082 Sum_probs=80.3
Q ss_pred eEEEecCC-EEEEEcCCC---CCCeEEEEECCCCc--EEEEec-cCCCee-EEEEEEeCCEEEEEE--eeCCEEEEEECC
Q 019091 109 GLLYAEND-TLFESTGLY---GRSSVRRVALETGK--VEAINQ-MEGSYF-GEGLTLLGEKLFQVT--WLQKTGFIYDQN 178 (346)
Q Consensus 109 GL~~~~d~-~LyeStGly---g~s~V~~iDl~Tgk--v~~~~~-l~~~~F-geGit~~g~~LY~lt--w~~~~v~V~D~~ 178 (346)
++.+.+|+ .||.++-.. -...|...++.|+. -..... -++..+ ....+-+++.+.+.. -.++.++++|..
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 58888776 466554321 23689999999983 211222 222233 222222455555332 334678888843
Q ss_pred --CCcEEEEEecCCCceeEEeeCCCEEEE-EC-C--CCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCCEEEEE
Q 019091 179 --NLNKLEEFTHQMKDGWGLATDGKVLFG-SD-G--SSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWAN 251 (346)
Q Consensus 179 --tl~~i~ti~~~~peGwGLt~Dg~~Lyv-Sd-G--s~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~LyaN 251 (346)
+.+...-++.+...-+.+...++.+|+ +| + ...|..+|..+-..- +.-+.. .+. .+.++.+..++|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~---~i~~~~~~~~~l~~~ 331 (686)
T PRK10115 256 LADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENI---MLEGFTLFTDWLVVE 331 (686)
T ss_pred CCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCC---EEEEEEEECCEEEEE
Confidence 333222233332233445555678877 66 3 336766676531111 222221 111 233566667776654
Q ss_pred e--cCCCeEEEEeCCCCeEEEEE
Q 019091 252 V--WQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 252 v--~~sn~I~vID~~TG~Vv~~I 272 (346)
. -....|.++|+.++++ ..+
T Consensus 332 ~~~~g~~~l~~~~~~~~~~-~~l 353 (686)
T PRK10115 332 ERQRGLTSLRQINRKTREV-IGI 353 (686)
T ss_pred EEeCCEEEEEEEcCCCCce-EEe
Confidence 3 3345688888876654 344
No 401
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=53.86 E-value=68 Score=33.20 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=17.3
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeE
Q 019091 127 RSSVRRVALETGKVEAINQMEGSYFG 152 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~Fg 152 (346)
-+.|.++|++||+ ......+++.|+
T Consensus 396 ~~~l~k~D~~tg~-~~~~~~~~~~~~ 420 (486)
T PF03055_consen 396 FNGLVKVDLETGE-VQRWSFGPGCFP 420 (486)
T ss_dssp EEEEEEEETTTTE-EEEEE-TTTEEE
T ss_pred CCEEEEEeccccc-ceEEECCCCcee
Confidence 4689999999998 556666654443
No 402
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=53.84 E-value=2.6e+02 Score=28.62 Aligned_cols=178 Identities=11% Similarity=0.203 Sum_probs=101.5
Q ss_pred CCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-----CCeeEEEE-EEeCC
Q 019091 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-----GSYFGEGL-TLLGE 160 (346)
Q Consensus 87 ~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-----~~~FgeGi-t~~g~ 160 (346)
.|.+|...=-+.||--....|+|-.|++...|.++.+..+..-+.+=|++.|++ ..++|+ ..-|.--+ ++.++
T Consensus 116 ~pTvY~Fsgd~iY~~f~~~lTR~a~fDGe~VLvvsR~~~~pHLLkvsdLK~g~i-npI~LdlTgVtgGTf~yNmgAl~nG 194 (442)
T PF15416_consen 116 KPTVYDFSGDNIYDDFAGLLTRCASFDGEHVLVVSRGTTKPHLLKVSDLKAGEI-NPIPLDLTGVTGGTFSYNMGALVNG 194 (442)
T ss_pred CCceEeccCCccchhhhhhhhcccCCCCcEEEEEecCCCCceeeehhHhhcCCc-cceeeecccccCcccccchhhhcCC
Confidence 455566555556665567888999998655678886633333344445666653 444443 22222112 34689
Q ss_pred EEEEEEeeCC-----EEEEEECCC--CcEEEEEecCC------CceeEEe----eCC-CEEEEEC-CCCeEEEEeCCCCc
Q 019091 161 KLFQVTWLQK-----TGFIYDQNN--LNKLEEFTHQM------KDGWGLA----TDG-KVLFGSD-GSSMLYQIDPQTLK 221 (346)
Q Consensus 161 ~LY~ltw~~~-----~v~V~D~~t--l~~i~ti~~~~------peGwGLt----~Dg-~~LyvSd-Gs~~l~vIDp~T~k 221 (346)
++|+++--.+ +++-++.-| =++++.|.++. ..|-.++ .+| ..+|-.| .+..+.-++.++++
T Consensus 195 H~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn~k 274 (442)
T PF15416_consen 195 HSYLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVSNYK 274 (442)
T ss_pred eEEEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEccCcc
Confidence 9999986654 455566544 36777777641 2333333 223 3555554 56677777877777
Q ss_pred EEE----EEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCe
Q 019091 222 VIR----KDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGV 267 (346)
Q Consensus 222 vi~----~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~ 267 (346)
-+. -|++..+-.-+.+.|-++-.+.+||.-+ .--|..+|-.-++
T Consensus 275 ~v~~~~~vip~~~~~~~~t~v~ri~nT~~Yl~sG~--~~PvtLv~~s~~~ 322 (442)
T PF15416_consen 275 TVSTEPKVIPSKADATMWTNVYRIGNTSQYLWSGH--RMPVTLVDESGGA 322 (442)
T ss_pred cccCcceEeecCCCcceeEEEEEeccccceeEecc--ccceEEecccccc
Confidence 653 2333322334445555555567888764 4457777765444
No 403
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=53.36 E-value=29 Score=30.08 Aligned_cols=74 Identities=4% Similarity=-0.101 Sum_probs=40.0
Q ss_pred hhhHHHHHHHhheeccccccccccCCCCCCCCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEE
Q 019091 57 AVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVA 134 (346)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iD 134 (346)
++.++++++++|+++.|--+..... ........++|+...+.+++-...=+++ .+..|..+=.-..-+.++.++
T Consensus 21 v~~~L~lVl~lI~~~aWLlkR~~~~---~~~~~~~~lkVva~~slG~RErvvvVeV-~~~~LlLGVT~~~I~~Lh~l~ 94 (124)
T PRK11486 21 VSGALIGIIALILAAAWLVKRLGFA---PKRTGVRGLKISASASLGARERVVIVDV-EDARLVLGVTAGQINLLHKLP 94 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC---CCCCCCcceEEEEeeccCCccEEEEEEE-CCEEEEEEEccCceeehhccC
Confidence 6777777777776655444433311 2222233589999999988874222233 344555543211333444444
No 404
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=52.46 E-value=2.5e+02 Score=29.08 Aligned_cols=131 Identities=13% Similarity=0.069 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe------CCEEEEEEee--C---C--EEEEEECCCCc
Q 019091 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL------GEKLFQVTWL--Q---K--TGFIYDQNNLN 181 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~------g~~LY~ltw~--~---~--~v~V~D~~tl~ 181 (346)
.|+||..+ +...-..+|+.|-+.+....+++..-+..++.+ .+++|-..+. . . .++++|++. +
T Consensus 130 ~g~llAl~---E~g~p~~lDp~TLeT~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g-~ 205 (486)
T PF03055_consen 130 GGRLLALW---EGGPPYELDPDTLETLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDG-K 205 (486)
T ss_dssp TTEEEEE----TTSEEEEEETTTCEEEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTS-E
T ss_pred CCEEEEEE---cCCCCEEechhHhhhcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCcc-c
Confidence 35777653 345999999999999998877643222333332 2456655543 1 2 267777654 4
Q ss_pred EEEEEec-C-----CCceeEEeeC------------------CC---EEEEEC--CCCeEEEEeCCCC-cEEEEEEeccC
Q 019091 182 KLEEFTH-Q-----MKDGWGLATD------------------GK---VLFGSD--GSSMLYQIDPQTL-KVIRKDIVRYK 231 (346)
Q Consensus 182 ~i~ti~~-~-----~peGwGLt~D------------------g~---~LyvSd--Gs~~l~vIDp~T~-kvi~~I~V~~~ 231 (346)
++.+.+. + +..-+++|.+ |. ..+.-| ....+++|+-.+. +.++.+.+ ..
T Consensus 206 ~~~~~~~~~~~~~~~iHdf~vT~~Y~V~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~~~v~~~~~-~~ 284 (486)
T PF03055_consen 206 KIHRVPSFPLPRPSYIHDFAVTENYVVFPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGKSPVRWFEA-PP 284 (486)
T ss_dssp EEEEEEESCCCS-B-----EE-SSEEEEEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSCCCEEEEEE-TT
T ss_pred eeEEeeeccCCCCcccccccccCceEEEEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCCceeEEEec-CC
Confidence 5544443 2 2234455543 33 344433 4668999998888 77888888 44
Q ss_pred CeeeeeceeeEeeCC--EEEE
Q 019091 232 GREVRNLNELEFIKG--EVWA 250 (346)
Q Consensus 232 G~pv~~lNELE~~~G--~Lya 250 (346)
...++.+|..|-.|| +|.+
T Consensus 285 ~~~~H~~NAyE~~dg~~~iv~ 305 (486)
T PF03055_consen 285 FFVFHFVNAYEDDDGGGEIVL 305 (486)
T ss_dssp CEEEEEEEEEEETTT-TEEEE
T ss_pred hhhccccceeecCCCceEEEE
Confidence 578899999887664 7664
No 405
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=52.26 E-value=73 Score=33.70 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=40.3
Q ss_pred CCEEEEEECCCCcEEEEEecCCCceeEEeeCCC-EEEE--ECCCC--eEEEEeCCCCcEEEEEEe
Q 019091 169 QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK-VLFG--SDGSS--MLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~-~Lyv--SdGs~--~l~vIDp~T~kvi~~I~V 228 (346)
-+.+.++|+++.+.+.+=++-.--|.+|-..++ .+.+ +.|.. +|..|||.|+++++.=..
T Consensus 374 ls~LvllD~~tg~~l~~S~~~~Ir~r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~kes~~ 438 (489)
T PF05262_consen 374 LSELVLLDSDTGDTLKRSPVNGIRGRTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEVKKESED 438 (489)
T ss_pred ceeEEEEeCCCCceecccccceeccceeEEcCCCEEEEeccCCchheEEEecCcccceeeeeccc
Confidence 478899999999988877653235566665544 3333 33533 677778999998765443
No 406
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=50.99 E-value=3.5e+02 Score=30.00 Aligned_cols=118 Identities=12% Similarity=0.080 Sum_probs=72.7
Q ss_pred EecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019091 99 FPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 99 ~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
.+|...- .-+..-|.+ .|++.+ .+-.|+.|.- |+.++...- ..---.|++...+.-|.+--.++.+...|.
T Consensus 137 ~gH~asV--WAv~~l~e~-~~vTgs--aDKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~~flScsNDg~Ir~w~~- 207 (745)
T KOG0301|consen 137 QGHTASV--WAVASLPEN-TYVTGS--ADKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL- 207 (745)
T ss_pred CCcchhe--eeeeecCCC-cEEecc--CcceeeeccC--Cchhhhhcc-chhheeeeEEecCCCeEeecCCceEEEEec-
Confidence 3564444 366666655 777866 6678888865 444444432 333467788877756666666888888887
Q ss_pred CCcEEEEEe-cCCCceeEEe-eCCCEEEEECC-CCeEEEEeCCCCcEEEEEEe
Q 019091 179 NLNKLEEFT-HQMKDGWGLA-TDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 179 tl~~i~ti~-~~~peGwGLt-~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V 228 (346)
+++.+-+.. +. ..=+-++ .-++.+++|-| +.++.+++-. +....|.+
T Consensus 208 ~ge~l~~~~ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 208 DGEVLLEMHGHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL 257 (745)
T ss_pred cCceeeeeeccc-eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec
Confidence 566665543 22 2333444 33455677765 7788888755 66666666
No 407
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.71 E-value=27 Score=39.83 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=57.7
Q ss_pred eeEEEecCC--EEEEEcCCCCCCeEEEEECCCC----cEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCEEEEEECCC
Q 019091 108 QGLLYAEND--TLFESTGLYGRSSVRRVALETG----KVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 108 qGL~~~~d~--~LyeStGlyg~s~V~~iDl~Tg----kv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~t 179 (346)
-+|+++||+ +|.++++......|..||++.- |+...+.- +. .++.. .+.++....-++++++..+++|
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~--Gi--lslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR--GI--LSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc--ce--eeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 689999988 6999999888889999997642 22222211 11 12222 3457888899999999999999
Q ss_pred CcEEEEEecC
Q 019091 180 LNKLEEFTHQ 189 (346)
Q Consensus 180 l~~i~ti~~~ 189 (346)
.+++.+++.+
T Consensus 286 gEvl~~~p~~ 295 (1049)
T KOG0307|consen 286 GEVLGELPAQ 295 (1049)
T ss_pred ceEeeecCCC
Confidence 9999999974
No 408
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=49.65 E-value=65 Score=34.57 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=54.4
Q ss_pred CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEE
Q 019091 191 KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVL 269 (346)
Q Consensus 191 peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv 269 (346)
.....+++||++|-.--.+..|.++|=.+++++...+-.-+|- --+.|- ||+..|+=..+|-|.|-....++||
T Consensus 293 in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL-----LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL-----LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred ccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce-----EEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 4555678899998776668899999988888765443322221 112222 7877777777888999999999999
Q ss_pred EEE
Q 019091 270 GWV 272 (346)
Q Consensus 270 ~~I 272 (346)
++=
T Consensus 368 ARG 370 (636)
T KOG2394|consen 368 ARG 370 (636)
T ss_pred Eec
Confidence 874
No 409
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=49.64 E-value=2.6e+02 Score=27.35 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=60.8
Q ss_pred eeEEEe-cCC--EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee--EEEEEEeCCEEEEEEee----CCEEEEEECC
Q 019091 108 QGLLYA-END--TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF--GEGLTLLGEKLFQVTWL----QKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~-~d~--~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F--geGit~~g~~LY~ltw~----~~~v~V~D~~ 178 (346)
+.+.+. +++ .|+.+- ..|-..|..+|.++++.. .+.-++-.. -.++...++.||-..-. ...++.++.+
T Consensus 238 ~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 466665 444 466665 678899999999999743 443333222 12344456788866543 5689999998
Q ss_pred CCcEEEEEecC-CCc-eeEEeeCCCEEEEE
Q 019091 179 NLNKLEEFTHQ-MKD-GWGLATDGKVLFGS 206 (346)
Q Consensus 179 tl~~i~ti~~~-~pe-GwGLt~Dg~~LyvS 206 (346)
+...+..+.-+ ..+ ...+++||+.+..+
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 45566667654 233 56689999987764
No 410
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.52 E-value=84 Score=33.14 Aligned_cols=141 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC------CEEEEEEeeCCE----EEEEECCCCcEEEEEecCCCce
Q 019091 124 LYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG------EKLFQVTWLQKT----GFIYDQNNLNKLEEFTHQMKDG 193 (346)
Q Consensus 124 lyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g------~~LY~ltw~~~~----v~V~D~~tl~~i~ti~~~~peG 193 (346)
++.-..-+++|+.|-+.+..-.+.+.++|.+++.+. ++|+-....... ++++| .+++++++..+.. .|
T Consensus 150 lwEgG~pyrLdp~tL~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~-~~G~l~r~~~i~l-pg 227 (490)
T COG3670 150 LWEGGSPYRLDPDTLETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVD-ADGELRRTVDIPL-PG 227 (490)
T ss_pred HHhcCCccccChhHhhhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEEC-CCCcEEEeeeeec-CC
Q ss_pred eEEeeC------------------------------CCEEEEECCCCeEEEEeCC-CCcEEEEEEeccCCeeeeeceeeE
Q 019091 194 WGLATD------------------------------GKVLFGSDGSSMLYQIDPQ-TLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 194 wGLt~D------------------------------g~~LyvSdGs~~l~vIDp~-T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
..+.+| .-..|=.+.-.++.|+|-+ + +.++..++ ..+.-++.+|..|
T Consensus 228 ~~~~HDFa~T~~y~If~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g~-~~irwfE~-~p~fvfH~~NAye 305 (490)
T COG3670 228 PPMMHDFAITENYLIFFDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREGD-SEIRWFEA-EPGFVFHFLNAYE 305 (490)
T ss_pred CccceeeeecCceEEEEeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCCC-CceeEEec-CCeEEEEecceee
Q ss_pred eeCCEEEEEecCCCeE-------------------------EEEeCCCCeE
Q 019091 243 FIKGEVWANVWQTDCI-------------------------ARISHEDGVV 268 (346)
Q Consensus 243 ~~~G~LyaNv~~sn~I-------------------------~vID~~TG~V 268 (346)
-.|+.|-+-....++. ..||++||+|
T Consensus 306 ~~d~~v~~d~~~~~~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v 356 (490)
T COG3670 306 EGDEVVLVDFLRYDDFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKV 356 (490)
T ss_pred cCCCcEEEEEEeecccccccccccccccccccccCCCcceEEEEccccchh
No 411
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=48.60 E-value=3.1e+02 Score=27.90 Aligned_cols=67 Identities=10% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCcceeEEEecCCE---EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEEC
Q 019091 104 RAFTQGLLYAENDT---LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 104 ~~FTqGL~~~~d~~---LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~ 177 (346)
.+| ..++++|+++ ||..+| .+.++..+-.+....+.++..--...+..-|+.--++.| ++.+.++.+
T Consensus 217 ~~i-~~iavSpng~~iAl~t~~g-----~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg~ 286 (410)
T PF04841_consen 217 GPI-IKIAVSPNGKFIALFTDSG-----NLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVGP 286 (410)
T ss_pred CCe-EEEEECCCCCEEEEEECCC-----CEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEECC
Confidence 455 7788887774 343333 676776666666666666522112456667766666777 556666654
No 412
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=48.17 E-value=46 Score=33.12 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCEEEEEECCC-CcEEEEEecCCCc-eeE----EeeC--C--CEEEEECCCCeEEEEeCCC
Q 019091 169 QKTGFIYDQNN-LNKLEEFTHQMKD-GWG----LATD--G--KVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 169 ~~~v~V~D~~t-l~~i~ti~~~~pe-GwG----Lt~D--g--~~LyvSdGs~~l~vIDp~T 219 (346)
...+||+|++| ++++++|..+... |.+ +..| | +++|+-|-...|+-+|...
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~ 240 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSS 240 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--T
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCCCcEEEEECCC
Confidence 46799999999 9999999875222 222 2223 3 5899999888999999753
No 413
>PF06823 DUF1236: Protein of unknown function (DUF1236); InterPro: IPR009642 This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.
Probab=46.97 E-value=36 Score=26.13 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019091 245 KGEVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
.|+-|+.+ .+.++++||+|.+|+..|+
T Consensus 39 p~Y~Y~~v--~~~~ViVdP~Tr~VV~vi~ 65 (65)
T PF06823_consen 39 PGYRYVVV--NDRIVIVDPRTRRVVQVID 65 (65)
T ss_pred CCceEEEE--CCEEEEEcCCCCEEEEEeC
Confidence 47777665 4589999999999998873
No 414
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=46.96 E-value=42 Score=35.89 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=51.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eC-CEEEEEEeeCCEEEEEECCCCcEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LG-EKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g-~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
.++.|++||+.+-+-++ +..+++||.++.+++.. -+.|||-=+.+ .. +++.+.--+++-|.|+.-..+++++
T Consensus 294 n~f~FS~DG~~LA~VSq--DGfLRvF~fdt~eLlg~---mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQ--DGFLRIFDFDTQELLGV---MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cceeEcCCCceEEEEec--CceEEEeeccHHHHHHH---HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 57899999975544443 34999999999887543 35788854444 23 3444444667789999999998888
Q ss_pred E
Q 019091 185 E 185 (346)
Q Consensus 185 t 185 (346)
+
T Consensus 369 R 369 (636)
T KOG2394|consen 369 R 369 (636)
T ss_pred e
Confidence 7
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=46.02 E-value=4.3e+02 Score=28.76 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=75.1
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC--------CEEEEEEeeCCEEEEEECCCCc-EEEE
Q 019091 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--------EKLFQVTWLQKTGFIYDQNNLN-KLEE 185 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g--------~~LY~ltw~~~~v~V~D~~tl~-~i~t 185 (346)
|..|+..+|. ..++++..|..-|||+....+.... -....+.. +.|. -.-++.||.+|+.-.. .++.
T Consensus 478 dssli~~dg~-~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv--GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGG-ERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV--GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCC-CcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE--eecccceEEecccccCCceee
Confidence 3344444442 6789999999999999999886543 11112221 1222 2236779999986432 2221
Q ss_pred Ee---cC--CCceeEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEecCCCeE
Q 019091 186 FT---HQ--MKDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQTDCI 258 (346)
Q Consensus 186 i~---~~--~peGwGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~~sn~I 258 (346)
.. |- ..---|.+...+++-+ |++ +.|...|--.- .++..+..-|..+.++. . ..+| .|.|+| .+.+
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~k-GDirLyDRig~--rAKtalP~lG~aIk~id-v-ta~Gk~ilaTC--k~yl 626 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRK-GDIRLYDRIGK--RAKTALPGLGDAIKHID-V-TANGKHILATC--KNYL 626 (776)
T ss_pred eeehhccccccccccccccCceEEEecCC-Cceeeehhhcc--hhhhcCcccccceeeeE-e-ecCCcEEEEee--cceE
Confidence 11 11 1122244444444444 553 34555553211 11112212233333221 1 1244 688888 6888
Q ss_pred EEEeCC--CCeEEEEE
Q 019091 259 ARISHE--DGVVLGWV 272 (346)
Q Consensus 259 ~vID~~--TG~Vv~~I 272 (346)
..+|.. .|+-.+++
T Consensus 627 lL~d~~ik~g~~aGr~ 642 (776)
T COG5167 627 LLTDVPIKYGQPAGRD 642 (776)
T ss_pred EEEecccccCCccccc
Confidence 888864 46666665
No 416
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=44.59 E-value=79 Score=31.09 Aligned_cols=45 Identities=7% Similarity=0.064 Sum_probs=22.2
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEE
Q 019091 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Lyv 205 (346)
.+|.+.-.-+.+..|--...+.+..+..|-..+|.+.+.+.+||+
T Consensus 43 ~V~~V~~~~G~~T~I~f~~gE~I~~va~GDt~sW~v~~~~N~lfI 87 (292)
T PRK13861 43 QVVRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALPRGNYLFF 87 (292)
T ss_pred CEEEEEEECCcEEEEEECCCCEEEEeccccccceEEecCCcEEEE
Confidence 344444444444444444445555555444456666665555555
No 417
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=44.55 E-value=4.5e+02 Score=28.65 Aligned_cols=131 Identities=10% Similarity=0.100 Sum_probs=71.7
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcC---------CCCCCeEEEEECCCCcEEEEeccCCCeeEE-EE-EEeCCE
Q 019091 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTG---------LYGRSSVRRVALETGKVEAINQMEGSYFGE-GL-TLLGEK 161 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStG---------lyg~s~V~~iDl~Tgkv~~~~~l~~~~Fge-Gi-t~~g~~ 161 (346)
+.-+++++| +.+|=+.|+|+.+-+++=+ .....++.+||.+||.+.+..+....+... -+ -..-+.
T Consensus 241 f~r~~RF~H---p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 241 FDRIQRFYH---PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD 317 (698)
T ss_pred HHHHHhccC---CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC
Confidence 333445555 4457788999887655521 112368999999999998888764321110 01 111233
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEE-EEECC----CCeEEEEeCCCCcEEEEE
Q 019091 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVL-FGSDG----SSMLYQIDPQTLKVIRKD 226 (346)
Q Consensus 162 LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~L-yvSdG----s~~l~vIDp~T~kvi~~I 226 (346)
=|.+--..+.+.||++.++.++..=+.. .--+..-+|-+..| |-+.. -.++..+...+.+.+++.
T Consensus 318 Ky~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 318 KYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK 389 (698)
T ss_pred ceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec
Confidence 4555455689999998888776543332 11222334444433 33321 335566665555555443
No 418
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=44.42 E-value=4.8e+02 Score=28.89 Aligned_cols=240 Identities=13% Similarity=0.127 Sum_probs=118.3
Q ss_pred CCCceeeeEEEEE-----EecCCCCcceeEEEecCC-EEEEEcCC-C-CCCeEEEEECCC----CcEEEEeccCCCeeEE
Q 019091 86 QSPSIYTIQVVNE-----FPHDPRAFTQGLLYAEND-TLFESTGL-Y-GRSSVRRVALET----GKVEAINQMEGSYFGE 153 (346)
Q Consensus 86 ~~~~~~t~~Vv~t-----~phd~~~FTqGL~~~~d~-~LyeStGl-y-g~s~V~~iDl~T----gkv~~~~~l~~~~Fge 153 (346)
.+-..|++++.+. +|-.-..-..|+++.+|+ .||-..-. + --++|.+--+.| .+++-.-+=+.-.+..
T Consensus 150 ~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v 229 (682)
T COG1770 150 LGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSV 229 (682)
T ss_pred ccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEe
Confidence 3445566665543 332222222578888776 45544322 1 234555544444 2233322223333455
Q ss_pred EEEEeCCEEEEE--EeeCCEEEEEECCCCcEEEEEecCCCceeE--EeeCCCEEEE-EC--CCCeEEEEeCC-CCcE-EE
Q 019091 154 GLTLLGEKLFQV--TWLQKTGFIYDQNNLNKLEEFTHQMKDGWG--LATDGKVLFG-SD--GSSMLYQIDPQ-TLKV-IR 224 (346)
Q Consensus 154 Git~~g~~LY~l--tw~~~~v~V~D~~tl~~i~ti~~~~peGwG--Lt~Dg~~Lyv-Sd--Gs~~l~vIDp~-T~kv-i~ 224 (346)
|-+..++.|++. +-....++++|+++-.-.-.+-.+.+.|.. +.+-|++.|+ || |-|.-.+--|. ..+. -+
T Consensus 230 ~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~ 309 (682)
T COG1770 230 GRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWR 309 (682)
T ss_pred eeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceEEEEccCCCChhcCe
Confidence 555566777754 566788999998866544333233344544 4555777666 77 33333232232 1111 11
Q ss_pred EEEeccCCeeeeeceeeEeeCCEEEEEe--cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019091 225 KDIVRYKGREVRNLNELEFIKGEVWANV--WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 225 ~I~V~~~G~pv~~lNELE~~~G~LyaNv--~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
.+.... +-..|-.....++.|.+.. -.-..|.+.|-++|++.+ |.+.+..-...- ..| ...+.+
T Consensus 310 ~~I~h~---~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~f~~~ay~~~l-------~~~---~e~~s~ 375 (682)
T COG1770 310 ELIPHR---EDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IAFDDEAYSAGL-------SGN---PEFDSD 375 (682)
T ss_pred eeeccC---CCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EEecchhhhccc-------cCC---CCCCCc
Confidence 112222 2223333444556555433 334578889999999877 766443211110 111 111222
Q ss_pred EE--EE-ecCCCCcEEEEEEe------eccccccCCCchhHHHhhh
Q 019091 303 RI--FV-TGKLWPKLYEINLR------EMKRERKDGFNVDTIIEQL 339 (346)
Q Consensus 303 ~L--fV-TGK~Wp~l~ev~l~------~~~~~~~~~~~~~~~~~~~ 339 (346)
+| .. .=--=.++|+..+. ...++...|||-++++.|-
T Consensus 376 ~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~r 421 (682)
T COG1770 376 RLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRR 421 (682)
T ss_pred cEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEE
Confidence 22 11 11123577888773 2456777789988876653
No 419
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.36 E-value=4.8e+02 Score=28.88 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=95.6
Q ss_pred cccccccCCCCCCCCceeee---EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe
Q 019091 74 SSNMWIRFPGVDQSPSIYTI---QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY 150 (346)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~t~---~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~ 150 (346)
+-+.|.-..+-+.-+.+|.| +-|.++.. ...|.+-++++|..-.+.|+. ++-.|..||-+.+=--.+..-+...
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P~vLtsS--DDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLPYVLTSS--DDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCCeEEecC--CccEEEEeeccCceeeeeEEcCcce
Confidence 44555555555556666655 44555543 467889999999665666766 7789999999977444444456677
Q ss_pred eEEEEEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeE-Ee--eCCC--EEEEECCCCeEEEEeCCCCcEE
Q 019091 151 FGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG-LA--TDGK--VLFGSDGSSMLYQIDPQTLKVI 223 (346)
Q Consensus 151 FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG-Lt--~Dg~--~LyvSdGs~~l~vIDp~T~kvi 223 (346)
|-.-++..+ ..-|++.-.+++|-|....+-....|+.-. .-|.- ++ +-|+ .|+..-.+..|-++|=+|.+-+
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 777777753 346777777888888887666666666521 23322 22 2233 3433223679999999887665
Q ss_pred EEEE
Q 019091 224 RKDI 227 (346)
Q Consensus 224 ~~I~ 227 (346)
.+++
T Consensus 221 ~TLe 224 (794)
T KOG0276|consen 221 QTLE 224 (794)
T ss_pred HHhh
Confidence 5544
No 420
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=43.77 E-value=3.4e+02 Score=26.98 Aligned_cols=121 Identities=10% Similarity=0.123 Sum_probs=73.2
Q ss_pred eeEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCC-CeeEEEEEEeC-CEEEEEEe
Q 019091 92 TIQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEG-SYFGEGLTLLG-EKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~-~~FgeGit~~g-~~LY~ltw 167 (346)
.++.+.++. |+..- .+++++.+|.++-++.+ +-+|-+|..+.+....-.. |.+ ..=--++..++ ..|...--
T Consensus 94 efecv~~lEGHEnEV--K~Vaws~sG~~LATCSR--DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 94 EFECVATLEGHENEV--KCVAWSASGNYLATCSR--DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred ceeEEeeeeccccce--eEEEEcCCCCEEEEeeC--CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 567888886 55444 79999999999888885 3478888777543222221 111 01123355555 22444445
Q ss_pred eCCEEEEEECC---CCcEEEEEecCCCceeEE--eeCCCEEEEECCCCeEEEEe
Q 019091 168 LQKTGFIYDQN---NLNKLEEFTHQMKDGWGL--ATDGKVLFGSDGSSMLYQID 216 (346)
Q Consensus 168 ~~~~v~V~D~~---tl~~i~ti~~~~peGwGL--t~Dg~~LyvSdGs~~l~vID 216 (346)
++|+|-+|+-. +.+.+.++.--...=|.+ .+.|.+|.-.+.+.++.+.-
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 56777777644 677788887432356776 45678887766555555543
No 421
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=43.02 E-value=3e+02 Score=27.47 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=72.8
Q ss_pred eEEEEEEeCCEEEEEEeeC------CEEEEEECCCCcEEE-----EEecCCCceeEEeeCCCEEEEECC--------CCe
Q 019091 151 FGEGLTLLGEKLFQVTWLQ------KTGFIYDQNNLNKLE-----EFTHQMKDGWGLATDGKVLFGSDG--------SSM 211 (346)
Q Consensus 151 FgeGit~~g~~LY~ltw~~------~~v~V~D~~tl~~i~-----ti~~~~peGwGLt~Dg~~LyvSdG--------s~~ 211 (346)
+|+.+....+++|+---++ |.++-||++|-+-.+ .+| ++.+|-.-+--|+..|+--| |+.
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vP-gaRDGHsAcV~gn~MyiFGGye~~a~~FS~d 158 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVP-GARDGHSACVWGNQMYIFGGYEEDAQRFSQD 158 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecC-CccCCceeeEECcEEEEecChHHHHHhhhcc
Confidence 5887777889999864433 578999998765433 233 24577776667888888543 889
Q ss_pred EEEEeCCCCcEEEEEEeccCC--eeee---eceeeEee-CCE-----EEEEe--cCCCeEEEEeCCCCeEE
Q 019091 212 LYQIDPQTLKVIRKDIVRYKG--REVR---NLNELEFI-KGE-----VWANV--WQTDCIARISHEDGVVL 269 (346)
Q Consensus 212 l~vIDp~T~kvi~~I~V~~~G--~pv~---~lNELE~~-~G~-----LyaNv--~~sn~I~vID~~TG~Vv 269 (346)
++++|.+|++-.--.+-++.. +.++ .+.++-|+ +|+ .|-++ -.-++|.++|.+|+.-.
T Consensus 159 ~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~ 229 (392)
T KOG4693|consen 159 THVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWT 229 (392)
T ss_pred ceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccc
Confidence 999999998764322222211 1111 12222233 221 44333 23578999999999643
No 422
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=42.18 E-value=1.4e+02 Score=26.23 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=45.9
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccccccCCCchhH
Q 019091 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKDGFNVDT 334 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~~~~~~~~~~ 334 (346)
.+.|.+|+.=+++|+..-.+ +. ...-+-||+.|+..+++|+=.. ..||||.+. +|+-+||.
T Consensus 51 ~~~l~~vn~L~~~vV~e~~~--~~---------~~~~~~gl~~D~~~~t~W~ys~--~~I~ei~i~------~E~r~vWk 111 (147)
T PF05131_consen 51 SDRLIAVNRLNNKVVFEESL--LE---------TGGKILGLCRDPSSNTFWLYSS--NSIFEIVIN------NEDRDVWK 111 (147)
T ss_pred CCEEEEEEecCCcEEEEEEe--cc---------CCcceeeEEEcCCCCeEEEEeC--CeeEEEEcC------cchHHHHH
Confidence 67889999999999877765 11 1224679999999999998744 489999865 34456887
No 423
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=41.85 E-value=1e+02 Score=29.25 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=26.8
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEE
Q 019091 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Lyv 205 (346)
+.+|...-.-+.+..+-....+.+..+..|-..+|-+.+.|.+||+
T Consensus 38 ~~v~~V~~~~g~~T~I~f~~gE~I~~v~~GDt~~W~v~~~~n~i~I 83 (243)
T TIGR02781 38 DDVVRVVTSYGYSTTIEFADDETIKTVAVGDSKAWEVTPNGNKLFI 83 (243)
T ss_pred CCEEEEEEECCEEEEEEeCCCCEEEEecccCCcceEEEcCCCEEEE
Confidence 4455555555555555555556665555554566776666666665
No 424
>PF12435 DUF3678: Protein of unknown function (DUF3678) ; InterPro: IPR022146 This domain family is found in eukaryotes, and is approximately 40 amino acids in length.
Probab=41.73 E-value=11 Score=26.19 Aligned_cols=11 Identities=64% Similarity=0.501 Sum_probs=5.2
Q ss_pred CCCCccccccc
Q 019091 33 SSSSSSCMASN 43 (346)
Q Consensus 33 ~~~~~~~~~~~ 43 (346)
++++|+||+.+
T Consensus 16 ~~ssS~~~~H~ 26 (38)
T PF12435_consen 16 SSSSSSSMLHR 26 (38)
T ss_pred Ccccccchhhh
Confidence 33444555543
No 425
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=40.98 E-value=2e+02 Score=30.00 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=53.8
Q ss_pred EEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC---CCeeEEEEEEeCCEEEEEEeeCCEEE
Q 019091 97 NEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 97 ~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~---~~~FgeGit~~g~~LY~ltw~~~~v~ 173 (346)
..-||-..-| .|+|+-.++...|.|..| +|..-|..|.+.+....-. +..++....+. +.++++.-..+.|.
T Consensus 100 ~~~~H~SNIF--~L~F~~~N~~~~SG~~~~--~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 100 MEHPHRSNIF--SLEFDLENRFLYSGERWG--TVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVS 174 (609)
T ss_pred ccCccccceE--EEEEccCCeeEecCCCcc--eeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEE
Confidence 4456645555 899986566556777555 8999999988766555432 24556555555 45666666789999
Q ss_pred EEECCCCc
Q 019091 174 IYDQNNLN 181 (346)
Q Consensus 174 V~D~~tl~ 181 (346)
++|.....
T Consensus 175 ~~D~Rd~~ 182 (609)
T KOG4227|consen 175 FIDNRDRQ 182 (609)
T ss_pred EEeccCCC
Confidence 99977655
No 426
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.71 E-value=4.5e+02 Score=29.55 Aligned_cols=199 Identities=14% Similarity=0.072 Sum_probs=103.7
Q ss_pred cCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019091 101 HDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
|...+ .-|.|+.-. .+++|.++ ++.|..||+...+-.....-. +..--.-+.+..+..|.+...++.+-.+|..
T Consensus 132 H~Rs~--~~ldfh~tep~iliSGSQ--Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 132 HERSA--NKLDFHSTEPNILISGSQ--DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred hccce--eeeeeccCCccEEEecCC--CceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 43444 567777655 57888774 459999999876543332111 0000111223336678888999999999965
Q ss_pred C-CcEEEEEecCCCceeEEe--eCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEE
Q 019091 179 N-LNKLEEFTHQMKDGWGLA--TDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWAN 251 (346)
Q Consensus 179 t-l~~i~ti~~~~peGwGLt--~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaN 251 (346)
. .+-...+.. -.|-+++ ..-.+-|.+- | +.+|-++|-.+.+....+.|.. +-|+. -+.|- .-+..|+
T Consensus 208 qp~r~~~k~~A--H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~---rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 208 QPDRCEKKLTA--HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVG---RVKWRPARSYHLAT 281 (839)
T ss_pred CchhHHHHhhc--ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceee---eeeeccCccchhhh
Confidence 2 222223322 2344443 2223334433 4 7789899876655544444421 12332 23333 2244455
Q ss_pred ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccC-CCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 252 VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGY-NGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~-~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+-.-+ |+ -|..+|+ -+|-++.+.. --.++.-||||+.....++.++-..+.+++=.+.
T Consensus 282 csmv~-----dt----sV~VWDv--rRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 282 CSMVV-----DT----SVHVWDV--RRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred hhccc-----cc----eEEEEee--ccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 43221 11 1233333 1222232222 1245888999987556666777777777765553
No 427
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=40.51 E-value=76 Score=35.11 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=44.5
Q ss_pred ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEE
Q 019091 192 DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARI 261 (346)
Q Consensus 192 eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vI 261 (346)
.-.++.|||..|.++-| +++++.|+..+....+++-..+ -.|-..|. ||+.||.-. .|..++|
T Consensus 16 ~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKD-----tVycVAys~dGkrFASG~-aDK~VI~ 79 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKD-----TVYCVAYAKDGKRFASGS-ADKSVII 79 (1081)
T ss_pred heeEECCCCceEEEecC-CEEEEEeCCCcccccccccccc-----eEEEEEEccCCceeccCC-CceeEEE
Confidence 44577899999988764 6999999999999887776442 23345555 789998764 3443333
No 428
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.45 E-value=2e+02 Score=30.50 Aligned_cols=220 Identities=15% Similarity=0.129 Sum_probs=114.4
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCC---EEEEEEe
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGE---KLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~---~LY~ltw 167 (346)
.++.++.+..-...+ .+|+.+-||.|+.|-+. -+..+.++|..+-...+-++++--| |++=++-.|+ .|-+...
T Consensus 42 GvEfVKhFraHL~~I-~sl~~S~dg~L~~Sv~d-~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~ 119 (558)
T KOG0882|consen 42 GVEFVKHFRAHLGVI-LSLAVSYDGWLFRSVED-PDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLF 119 (558)
T ss_pred ceeehhhhHHHHHHH-HhhhccccceeEeeccC-cccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecc
Confidence 455565553223333 68888888899988552 2668888888877666666554322 3432222332 5667788
Q ss_pred eCCEEEEEECC-CCcEEEEEec-C-CCc-eeEEeeCCCEEEEECCCCeEEEEeCC-CCcEEEE-EEec------------
Q 019091 168 LQKTGFIYDQN-NLNKLEEFTH-Q-MKD-GWGLATDGKVLFGSDGSSMLYQIDPQ-TLKVIRK-DIVR------------ 229 (346)
Q Consensus 168 ~~~~v~V~D~~-tl~~i~ti~~-~-~pe-GwGLt~Dg~~LyvSdGs~~l~vIDp~-T~kvi~~-I~V~------------ 229 (346)
+++.++|||.. ++.+..-+.- . .|- -.-+.+-++...-.|-+..|--+.++ +++--++ +...
T Consensus 120 ~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 120 KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK 199 (558)
T ss_pred cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence 89999999975 3322222210 0 000 00122223333333345555555444 2222111 1110
Q ss_pred cCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhh--hhh-----------------ccC--C
Q 019091 230 YKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRER--LVA-----------------AGY--N 287 (346)
Q Consensus 230 ~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~--~~~-----------------~~~--~ 287 (346)
..+.|.. +|+. +|.=|+..-.+-.|-+.+.+||+++..||= .+... +++ ... .
T Consensus 200 ~Kt~pts----~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE-~~t~~~~q~ks~y~l~~VelgRRmaverelek~ 274 (558)
T KOG0882|consen 200 AKTEPTS----FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE-VLTDAQYQPKSPYGLMHVELGRRMAVERELEKH 274 (558)
T ss_pred cccCccc----eEEccccCcccccCcccEEEEEEeccchhhhhhhc-cchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence 1122222 4444 566666665566788889999999888753 11110 000 000 1
Q ss_pred CCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecc
Q 019091 288 GIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMK 323 (346)
Q Consensus 288 ~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~ 323 (346)
...+.--+.||.-++.|. ++++.-|++..+.
T Consensus 275 ~~~~~~~~~fdes~~fll-----y~t~~gikvin~~ 305 (558)
T KOG0882|consen 275 GSTVGTNAVFDESGNFLL-----YGTILGIKVINLD 305 (558)
T ss_pred cCcccceeEEcCCCCEEE-----eecceeEEEEEee
Confidence 112333477888877653 5678888876543
No 429
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=40.28 E-value=3.6e+02 Score=26.28 Aligned_cols=210 Identities=16% Similarity=0.211 Sum_probs=112.7
Q ss_pred eeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEE------ECCCCcEEEEeccCCCeeEEEEEEeCCEEEE
Q 019091 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRV------ALETGKVEAINQMEGSYFGEGLTLLGEKLFQ 164 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~i------Dl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ 164 (346)
..++-++.+.- ..+ .+.++|.|+|.||.-.. ++.+.++- |+..+.... ..|+...-.---.+.+-+|-
T Consensus 21 ~~f~~i~~l~d-sqa-irav~fhp~g~lyavgs--nskt~ric~yp~l~~~r~~hea~--~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 21 KHFEAINILED-SQA-IRAVAFHPAGGLYAVGS--NSKTFRICAYPALIDLRHAHEAA--KQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred cceEEEEEecc-hhh-eeeEEecCCCceEEecc--CCceEEEEccccccCcccccccc--cCCCeEEeeeccccCccEEE
Confidence 35666666653 444 38899999999996633 33344442 333332111 11211100000011234666
Q ss_pred EEeeCC-------------EEEEEECCCCcEEEE-EecCCCceeE--Ee--e---CCCEEEEECC--CCeEEEEeCCCCc
Q 019091 165 VTWLQK-------------TGFIYDQNNLNKLEE-FTHQMKDGWG--LA--T---DGKVLFGSDG--SSMLYQIDPQTLK 221 (346)
Q Consensus 165 ltw~~~-------------~v~V~D~~tl~~i~t-i~~~~peGwG--Lt--~---Dg~~LyvSdG--s~~l~vIDp~T~k 221 (346)
..|... +++-|+.+|-...+. ++..|-+|-- |+ . .|..+.+|-| +-.||+-|-.+++
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 555421 233344444443331 1111222211 21 1 2556777664 6688888877766
Q ss_pred EEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCC
Q 019091 222 VIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNR 301 (346)
Q Consensus 222 vi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~ 301 (346)
-.....=.. | ++-.|-..+|..||.--++.+|-.-|..-...+.+++- +.... +. .....-.+|.||.
T Consensus 175 ~~~a~sght-g----hilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-~~~~~----gl-essavaav~vdps- 242 (350)
T KOG0641|consen 175 GFHALSGHT-G----HILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-DFHDG----GL-ESSAVAAVAVDPS- 242 (350)
T ss_pred cceeecCCc-c----cEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccC-cccCC----Cc-ccceeEEEEECCC-
Confidence 544333211 2 22234445888999888888999999888888888866 33211 11 1234456899986
Q ss_pred CEEEEecCCCCc--EEEEE
Q 019091 302 NRIFVTGKLWPK--LYEIN 318 (346)
Q Consensus 302 ~~LfVTGK~Wp~--l~ev~ 318 (346)
.||+++|+.... ||.|+
T Consensus 243 grll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIR 261 (350)
T ss_pred cceeeeccCCCceEEEEee
Confidence 578899987754 56665
No 430
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=40.10 E-value=1.2e+02 Score=21.20 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=21.5
Q ss_pred EEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019091 152 GEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 152 geGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
+.++.+.|+.+|+++|.++ +.|+|..+
T Consensus 4 a~~v~v~g~yaYva~~~~G-l~IvDISn 30 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNG-LVIVDISN 30 (42)
T ss_pred EEEEEEECCEEEEEeCCCC-EEEEECCC
Confidence 5789999999999988755 56788654
No 431
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.78 E-value=6.6e+02 Score=29.13 Aligned_cols=198 Identities=15% Similarity=0.172 Sum_probs=115.9
Q ss_pred eEEEEEEe--cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee-EEEEEEeC-CEEEEEEee
Q 019091 93 IQVVNEFP--HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF-GEGLTLLG-EKLFQVTWL 168 (346)
Q Consensus 93 ~~Vv~t~p--hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F-geGit~~g-~~LY~ltw~ 168 (346)
.-||+-+- ||..- .=.+|.|.--|++|.+ ++-.|..|-..--|.=..-..-+.+- --++-.++ ..|..++-.
T Consensus 195 DaVVK~VLEGHDRGV--NwaAfhpTlpliVSG~--DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE 270 (1202)
T KOG0292|consen 195 DAVVKHVLEGHDRGV--NWAAFHPTLPLIVSGA--DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE 270 (1202)
T ss_pred Ceeeeeeeccccccc--ceEEecCCcceEEecC--CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC
Confidence 44555442 54333 2357777556999988 56677776554333222212211111 12333444 357788899
Q ss_pred CCEEEEEECCCCcEEEEEecCCCceeEEee-CCCEEEEECCCC--eEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC
Q 019091 169 QKTGFIYDQNNLNKLEEFTHQMKDGWGLAT-DGKVLFGSDGSS--MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~~~peGwGLt~-Dg~~LyvSdGs~--~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~ 245 (346)
++.+-|+|.+.++-+.+|.-+..-=|-|+. ..--||.+--++ .|+.++-+ +|...+| .|
T Consensus 271 DksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRE--------------rpa~~v~----~n 332 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERE--------------RPAYAVN----GN 332 (1202)
T ss_pred CccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEccc--------------CceEEEc----CC
Confidence 999999999999999999654335577764 344577764333 33333322 2332221 12
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecc
Q 019091 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMK 323 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~ 323 (346)
+-.||+ ...|.-.|..|.+=+....+ +.. -+...-+.-+.|+|..+.+.++--..+.-|++--.|-+
T Consensus 333 ~LfYvk---d~~i~~~d~~t~~d~~v~~l---r~~-----g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 333 GLFYVK---DRFIRSYDLRTQKDTAVASL---RRP-----GTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred EEEEEc---cceEEeeeccccccceeEec---cCC-----CcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 234455 45566667677555555533 211 01234567799999999999998888888888766644
No 432
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=39.71 E-value=2.1e+02 Score=27.47 Aligned_cols=136 Identities=12% Similarity=-0.013 Sum_probs=65.0
Q ss_pred EEEEECCCCcEEEEeccCCCeeEEEEEE-eCCEEEEE-Eee--CCEEEEEECCC----CcEEE---EEecCCCcee-EEe
Q 019091 130 VRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQV-TWL--QKTGFIYDQNN----LNKLE---EFTHQMKDGW-GLA 197 (346)
Q Consensus 130 V~~iDl~Tgkv~~~~~l~~~~FgeGit~-~g~~LY~l-tw~--~~~v~V~D~~t----l~~i~---ti~~~~peGw-GLt 197 (346)
=.+||+.|+++. -+.+....|..|=+. .++++.+. -|. .+.+-+|++.+ -.... ....+.=+.- ..-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 346888888774 345666677544444 33455554 232 24566777755 11111 1121100111 134
Q ss_pred eCCCEEEEECCCCeEEEEeCCCCcE--EEEEEe----cc-CC---eeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCe
Q 019091 198 TDGKVLFGSDGSSMLYQIDPQTLKV--IRKDIV----RY-KG---REVRNLNELEFIKGEVWANVWQTDCIARISHEDGV 267 (346)
Q Consensus 198 ~Dg~~LyvSdGs~~l~vIDp~T~kv--i~~I~V----~~-~G---~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~ 267 (346)
+||+.+++.=..+.-+.+-|+.... ...+.. .+ .. -|+-+ -..||+||+-... .=.+.|+.+++
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~----llPdG~lFi~an~--~s~i~d~~~n~ 200 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVH----LLPDGNLFIFANR--GSIIYDYKTNT 200 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEE----EcCCCCEEEEEcC--CcEEEeCCCCe
Confidence 6898888864333333343332111 111111 00 00 12211 1238988854432 34466999999
Q ss_pred EEEEE
Q 019091 268 VLGWV 272 (346)
Q Consensus 268 Vv~~I 272 (346)
++..+
T Consensus 201 v~~~l 205 (243)
T PF07250_consen 201 VVRTL 205 (243)
T ss_pred EEeeC
Confidence 87775
No 433
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=39.62 E-value=2.5e+02 Score=28.79 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=64.4
Q ss_pred EEEeCCEEEEEEeeCCEEEEEECCCCcE--EEEEecCC--CceeEEee-----CCCEEEEEC--C---CC-eEEEEeCCC
Q 019091 155 LTLLGEKLFQVTWLQKTGFIYDQNNLNK--LEEFTHQM--KDGWGLAT-----DGKVLFGSD--G---SS-MLYQIDPQT 219 (346)
Q Consensus 155 it~~g~~LY~ltw~~~~v~V~D~~tl~~--i~ti~~~~--peGwGLt~-----Dg~~LyvSd--G---s~-~l~vIDp~T 219 (346)
...+|.++.+.+-.+.....++..+++. +..|+... -.|=.+++ -+.+.|++. | |- +||-+++.|
T Consensus 139 a~fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~~~SPLKiY~w~tPt 218 (442)
T PF15416_consen 139 ASFDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGGKASPLKIYYWETPT 218 (442)
T ss_pred cCCCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCCCCCceEEEEecCCC
Confidence 3445666666666554555555544442 34444310 01111222 267889976 4 22 789998655
Q ss_pred --CcEEEEEEecc---CCeeeeecee-eEee---CCEEEEEecCCCeEEEEeCCCCeEE
Q 019091 220 --LKVIRKDIVRY---KGREVRNLNE-LEFI---KGEVWANVWQTDCIARISHEDGVVL 269 (346)
Q Consensus 220 --~kvi~~I~V~~---~G~pv~~lNE-LE~~---~G~LyaNv~~sn~I~vID~~TG~Vv 269 (346)
-++++.|.|+. .|...+ -|. +..+ ||++|-..-....|.+++.+..+-+
T Consensus 219 s~PevIa~inV~~I~gAg~RhG-Dn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn~k~v 276 (442)
T PF15416_consen 219 SAPEVIADINVGDIPGAGNRHG-DNFSLNLDENGNGYIFFGDNAATNILRFTVSNYKTV 276 (442)
T ss_pred CCceEEEeeeeccCcccccccC-cceeEEeccCCceEEEecCCccceEEEEEccCcccc
Confidence 67899999976 122111 121 2223 6788876555677888888887765
No 434
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=39.59 E-value=7.1e+02 Score=29.51 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=55.6
Q ss_pred eEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019091 93 IQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
..+..-.|-+..-+.+|+.|-.++ .++++++. ..|..+|+.|....-.-.++.+.-+...+++.+.+-++| ...
T Consensus 57 ~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~---G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT--~~~ 131 (1265)
T KOG1920|consen 57 LVAESFLPEDGDDEIVSVQFLADTNSICVITAL---GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALIT--GRQ 131 (1265)
T ss_pred ceeecccCcCCCcceEEEEEecccceEEEEecC---CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEe--CCc
Confidence 334444455555688999998665 67777652 488888999987665556666554444444555555555 333
Q ss_pred EEEEECCCCcEEEEEe
Q 019091 172 GFIYDQNNLNKLEEFT 187 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~ 187 (346)
-.++++.++.++.+-+
T Consensus 132 tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKP 147 (1265)
T ss_pred EEEEEeccccchhccc
Confidence 4455566776666544
No 435
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.97 E-value=1.4e+02 Score=33.63 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=59.1
Q ss_pred CCEEEEEEeeCCEEEEEECCCCcEEEEEecC---CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC----
Q 019091 159 GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK---- 231 (346)
Q Consensus 159 g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~---- 231 (346)
.++|+++|.+ +.+.-+|.+|++++-+--.+ ...|.+++. ++|++...++.+|.+++.....+...++
T Consensus 47 ~~rlivsT~~-~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~~-----~iS~dg~~lr~wn~~~g~l~~~i~l~~g~~~~ 120 (910)
T KOG2103|consen 47 SKRLIVSTEK-GVLASLNLRTGEIIWRQVLEPKTSGLGVPLTN-----TISVDGRYLRSWNTNNGILDWEIELADGFKGL 120 (910)
T ss_pred CceEEEEecc-chhheecccCCcEEEEEeccCCCcccCcceeE-----EEccCCcEEEeecCCCceeeeeccccccccee
Confidence 3788888865 78888999999998875432 122444443 3444444444444444433333322211
Q ss_pred ------------CeeeeeceeeEee------------------CCEEE--EEecCC-CeEEEEeCCCCeEEEEE
Q 019091 232 ------------GREVRNLNELEFI------------------KGEVW--ANVWQT-DCIARISHEDGVVLGWV 272 (346)
Q Consensus 232 ------------G~pv~~lNELE~~------------------~G~Ly--aNv~~s-n~I~vID~~TG~Vv~~I 272 (346)
|. .....|+++. .+-+| .-.|.+ -+|..++.++|.++++-
T Consensus 121 ~~~v~~~i~v~~g~-~~~~g~l~w~~~~~~~~~~~~q~~~~~~t~vvy~~~~l~~s~~~V~~~~~~~g~v~~~~ 193 (910)
T KOG2103|consen 121 LLEVNKGIAVLNGH-TRKFGELKWVESFSISIEEDLQDAKIYGTDVVYVLGLLKRSGSCVQQVFSDDGEVTGPQ 193 (910)
T ss_pred EEEEccceEEEcce-eccccceeehhhccccchhHHHHhhhccCcEEEEEEEEecCCceEEEEEccCCcEecce
Confidence 11 1122244432 23344 344543 46899999999998654
No 436
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=36.92 E-value=1e+02 Score=31.46 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=67.9
Q ss_pred eEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC--EEEEEecCCCeEEEEeCCCCeEEEE
Q 019091 194 WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG--EVWANVWQTDCIARISHEDGVVLGW 271 (346)
Q Consensus 194 wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G--~LyaNv~~sn~I~vID~~TG~Vv~~ 271 (346)
--++|+|+++-..+.. .+.+.|.+|+++..-...-+ .+.-+|+.-+ ++...-+....|-+-|...-+=...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cld------ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLD------KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHH------HhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 3588999987776655 99999999998753322211 1112566544 3444445566788888888877777
Q ss_pred EECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019091 272 VLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 272 I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
||-+ .+-+..|.|+|+|+.+..|...--+|-
T Consensus 87 Ideg-------------~agls~~~WSPdgrhiL~tseF~lriT 117 (447)
T KOG4497|consen 87 IDEG-------------QAGLSSISWSPDGRHILLTSEFDLRIT 117 (447)
T ss_pred eccC-------------CCcceeeeECCCcceEeeeecceeEEE
Confidence 7541 124677999999999998866544443
No 437
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=36.79 E-value=32 Score=28.19 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.1
Q ss_pred EEEEeCCCCeEEEEEECC
Q 019091 258 IARISHEDGVVLGWVLLP 275 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~ 275 (346)
|-|||.+||+|+..|+-.
T Consensus 70 VkViD~~T~eVIRqIP~E 87 (107)
T PF03646_consen 70 VKVIDKETGEVIRQIPPE 87 (107)
T ss_dssp EEEEETTT-SEEEEE-HH
T ss_pred EEEEECCCCcEEEeCCcH
Confidence 679999999999999753
No 438
>PRK04313 30S ribosomal protein S4e; Validated
Probab=36.68 E-value=1.6e+02 Score=28.31 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=36.9
Q ss_pred eEEEEeCC--CCcEE--EEEEeccCCeeeeeceeeEeeCCE--EEE--EecCCCeEEEEeCCCCeEEEEEEC
Q 019091 211 MLYQIDPQ--TLKVI--RKDIVRYKGREVRNLNELEFIKGE--VWA--NVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 211 ~l~vIDp~--T~kvi--~~I~V~~~G~pv~~lNELE~~~G~--Lya--Nv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
.++-|+++ .+++. ....+..+|.+. |-..||+ +|- +....++-++||..+++++..+.+
T Consensus 106 ~l~~I~~eea~~KL~KV~~k~~~~gG~~q-----l~~hDGrni~~~~~~~~k~~Dtv~i~l~~~kI~~~i~f 172 (237)
T PRK04313 106 VLIPISEEEAKLKLCKIENKTTVKGGKIQ-----LNLHDGRNILVDVEDDYKTGDSLLISLPEQEIVDHIPF 172 (237)
T ss_pred EEEECChHHccceEEEEEeEEEecCCEEE-----EEecCCceEEccCccccccCCEEEEECCCCceeEEEec
Confidence 45555433 34443 233334456662 4456774 443 456688899999999999999966
No 439
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=36.28 E-value=4.2e+02 Score=25.85 Aligned_cols=204 Identities=10% Similarity=0.080 Sum_probs=113.7
Q ss_pred EEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEE--EEECCCCcEEEE---ecc-CCCeeEEEEEE-----eCCEEEEE
Q 019091 97 NEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVR--RVALETGKVEAI---NQM-EGSYFGEGLTL-----LGEKLFQV 165 (346)
Q Consensus 97 ~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~--~iDl~Tgkv~~~---~~l-~~~~FgeGit~-----~g~~LY~l 165 (346)
++-.|-..- .-..++++|.|+.+.. ++..|. .++.+|...... ..+ +... ..++. .++.|...
T Consensus 84 r~khhkgsi--yc~~ws~~geliatgs--ndk~ik~l~fn~dt~~~~g~dle~nmhdgti--rdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 84 RNKHHKGSI--YCTAWSPCGELIATGS--NDKTIKVLPFNADTCNATGHDLEFNMHDGTI--RDLAFLDDPESGGAILAS 157 (350)
T ss_pred eccccCccE--EEEEecCccCeEEecC--CCceEEEEecccccccccCcceeeeecCCce--eeeEEecCCCcCceEEEe
Confidence 343453333 5778889999886644 334444 455555432111 111 1111 11121 12344443
Q ss_pred -EeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc--CCeeeeeceee
Q 019091 166 -TWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY--KGREVRNLNEL 241 (346)
Q Consensus 166 -tw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~--~G~pv~~lNEL 241 (346)
--.+-++++-|-.+++....+.--.+.=.+|-.-..++|+|- .+.+|.|+|..-..-+.++.-.- .|.+-...-..
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 345667777777777776666532123234445577888876 47799999987666555554432 23222222122
Q ss_pred Eee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019091 242 EFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 242 E~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
..+ .|+|.|+-..+..-..-|..-|+.+..+-.. ..-.-.+.|+|. .....|+.+..+|-.-.|+
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph-------------sadir~vrfsp~-a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH-------------SADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCC-------------ccceeEEEeCCC-ceEEEEecccceEEEeecc
Confidence 222 4899988776677778888999988777321 112345778875 4445677777766555554
No 440
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=35.85 E-value=97 Score=30.66 Aligned_cols=70 Identities=9% Similarity=0.085 Sum_probs=48.8
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC-EEEEEEeeCCEEEEEE
Q 019091 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYD 176 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~-~LY~ltw~~~~v~V~D 176 (346)
+|-.+|+.+-+|++++-++|.. .+|++|.-+|++-++.++....- -..++...+ .|..+.-++.++...+
T Consensus 251 npGv~gvrIRpD~KIlATAGWD--~RiRVyswrtl~pLAVLkyHsag-vn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWD--HRIRVYSWRTLNPLAVLKYHSAG-VNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred CCCccceEEccCCcEEeecccC--CcEEEEEeccCCchhhhhhhhcc-eeEEEeCCCCchhhhccCCceEEeee
Confidence 3445799999999999999954 49999999999877777664321 123444444 5666666666665544
No 441
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=35.72 E-value=1.5e+02 Score=32.10 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=14.6
Q ss_pred CCeEEEEECCCCcEEEEeccCCC
Q 019091 127 RSSVRRVALETGKVEAINQMEGS 149 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~ 149 (346)
-+.|.++|+.||++ .....+++
T Consensus 494 ~~givK~Dl~tg~~-~~~~~g~g 515 (590)
T PLN02258 494 VSGFAKVDLSTGEV-KKYIYGEG 515 (590)
T ss_pred CCeEEEEECCCCcE-EEEECCCC
Confidence 36899999999874 33344443
No 442
>smart00612 Kelch Kelch domain.
Probab=35.62 E-value=86 Score=20.33 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=22.9
Q ss_pred EEEEcCCCC---CCeEEEEECCCCcEEEEeccCCCeeEEEEE
Q 019091 118 LFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLT 156 (346)
Q Consensus 118 LyeStGlyg---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit 156 (346)
||+..|..+ .+.+.+||+.+++-...-+++......+++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~ 43 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVA 43 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEE
Confidence 555555322 357888999999865555555433333333
No 443
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=35.52 E-value=4.5e+02 Score=25.99 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=20.6
Q ss_pred EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019091 196 LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 196 Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
-+||+..|-.|+.+.+|.++|... ..+-.|+
T Consensus 51 WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 51 WSPDCTLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred ECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 367777777778777888888653 4444443
No 444
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=35.34 E-value=4.6e+02 Score=26.01 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=76.3
Q ss_pred CeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCC------------EEEEEECCC----Cc---EEEEEe
Q 019091 128 SSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQK------------TGFIYDQNN----LN---KLEEFT 187 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~------------~v~V~D~~t----l~---~i~ti~ 187 (346)
....+||++|..+..--.+. +..++.-+++ |++||+++-... .+++++... .. --..+|
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP 164 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLP 164 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCC
Confidence 46889999999887433332 2333433333 677999875521 145555210 00 011122
Q ss_pred ---cC--C------CceeEEeeCCCEEEEECCC--CeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEec
Q 019091 188 ---HQ--M------KDGWGLATDGKVLFGSDGS--SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVW 253 (346)
Q Consensus 188 ---~~--~------peGwGLt~Dg~~LyvSdGs--~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~ 253 (346)
+. . -..+++- ||.++|||-.. .--|-+|+++.+-. .+|+.--|+. ..-||+.. .+|+-.-
T Consensus 165 ~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~---~~GdW~LPF~--G~a~y~~el~~W~Gls 238 (342)
T PF07893_consen 165 PPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWR---KHGDWMLPFH--GQAEYVPELDLWFGLS 238 (342)
T ss_pred CCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCccee---eccceecCcC--CccEECCCcCeEEEec
Confidence 11 1 2356677 99999996532 25788999988754 4466433433 33455533 6888765
Q ss_pred CCC---eEEEEeCCCCe
Q 019091 254 QTD---CIARISHEDGV 267 (346)
Q Consensus 254 ~sn---~I~vID~~TG~ 267 (346)
..+ .+...|..+..
T Consensus 239 ~~~~~~~lca~dv~~~~ 255 (342)
T PF07893_consen 239 SDGGGGHLCACDVSSAD 255 (342)
T ss_pred cCCCCcEEEEEeccccc
Confidence 555 77777777753
No 445
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.14 E-value=4.6e+02 Score=25.98 Aligned_cols=200 Identities=11% Similarity=0.139 Sum_probs=109.8
Q ss_pred eEEEec--CCEEEEEc----CCCCCCeEEEEECCCCc---EEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECC-
Q 019091 109 GLLYAE--NDTLFEST----GLYGRSSVRRVALETGK---VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN- 178 (346)
Q Consensus 109 GL~~~~--d~~LyeSt----Glyg~s~V~~iDl~Tgk---v~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~- 178 (346)
++.|+| .++|-+.| |+-|..++.+.|.+.++ +..........|...-.........+.-.++.+-++|..
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 455554 35665555 44577799999886433 344445667788754444444444444567888899932
Q ss_pred CCcEEEEEecCCCceeEEeeC---CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC
Q 019091 179 NLNKLEEFTHQMKDGWGLATD---GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT 255 (346)
Q Consensus 179 tl~~i~ti~~~~peGwGLt~D---g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s 255 (346)
.-+.+..+.--..|=+.+..+ ++.+.+|-=+.+|-..|+.-.+-+.+.. +.+ .-++. -...+...-+|+..-.+
T Consensus 93 ~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~-~~Iy~-a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 93 PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHN-SCIYQ-AAFSPHIPNLFASASGD 169 (311)
T ss_pred CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCc-cEEEE-EecCCCCCCeEEEccCC
Confidence 122333333212465566543 4445555337899999987766655521 111 11110 01112244566666555
Q ss_pred CeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecccc
Q 019091 256 DCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 256 n~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~ 325 (346)
.+...-|.+. |+-.- |...++. . -..-|+.-.+++.+||...+.|+-=++..++.|
T Consensus 170 ~~l~lwdvr~~gk~~~-i~ah~~E------------i-l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMS-IEAHNSE------------I-LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred ceEEEEEecCCCceeE-EEeccce------------e-EeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 5555555443 44333 5443311 1 123366667889999999998887777665555
No 446
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=35.07 E-value=95 Score=25.59 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=26.7
Q ss_pred EEEecCCCC-cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEE
Q 019091 97 NEFPHDPRA-FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEA 142 (346)
Q Consensus 97 ~t~phd~~~-FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~ 142 (346)
+.=||...+ ..+|+.-..+|..++.+.+++ ..||+.||+.+.
T Consensus 44 n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~----~~Fdl~TG~~~~ 86 (108)
T PRK09511 44 NIDPFFQASVLSRGLIAEHQGELWVASPLKK----QRFRLSDGLCME 86 (108)
T ss_pred CcCCCCCCcccCCceEccCCCeEEEECCCCC----CEEECCCcccCC
Confidence 334775443 666754322346677778777 479999998764
No 447
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis]
Probab=34.63 E-value=2.3e+02 Score=27.25 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=25.1
Q ss_pred eEeeCCE-EEE--EecCCCeEEEEeCCCCeEEEEEEC
Q 019091 241 LEFIKGE-VWA--NVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 241 LE~~~G~-Lya--Nv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
|.+.||+ +.. .++.+++.++|+..+.++++.|.+
T Consensus 138 Ln~hDGrni~~~d~~~k~~Dtv~i~lp~~~I~~~i~f 174 (241)
T COG1471 138 LNLHDGRNIRLEDDNYKTGDTVKISLPEQKIVEHIKF 174 (241)
T ss_pred EEecCCceeeccCCccccccEEEEeCCChhheeEecc
Confidence 4456775 443 556677888999999999888866
No 448
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=34.62 E-value=2.9e+02 Score=29.31 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=58.5
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC----CEEEEEECCCCcEEE
Q 019091 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ----KTGFIYDQNNLNKLE 184 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~----~~v~V~D~~tl~~i~ 184 (346)
||.+..+++. -|.+..+|++||+++.+-++.. .-|-++...++.+.+.--.+ .++..+|+.||++++
T Consensus 364 ~Lkv~d~~~~--------ls~LvllD~~tg~~l~~S~~~~-Ir~r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~k 434 (489)
T PF05262_consen 364 GLKVLDPNHY--------LSELVLLDSDTGDTLKRSPVNG-IRGRTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEVKK 434 (489)
T ss_pred EEEEecCCCc--------ceeEEEEeCCCCceecccccce-eccceeEEcCCCEEEEeccCCchheEEEecCcccceeee
Confidence 7877654331 2499999999999887776542 22344555554433322112 334556999999988
Q ss_pred EEecC-CCceeEEeeCCCEEEE-E-C--CCCeEEEEeCCCCcE
Q 019091 185 EFTHQ-MKDGWGLATDGKVLFG-S-D--GSSMLYQIDPQTLKV 222 (346)
Q Consensus 185 ti~~~-~peGwGLt~Dg~~Lyv-S-d--Gs~~l~vIDp~T~kv 222 (346)
+=... ...- -|--||+.+|+ . + |.=.|.-+|.. ++.
T Consensus 435 es~~~i~~~S-~l~~~~~~iyaVv~~~~g~~~L~rF~~~-L~~ 475 (489)
T PF05262_consen 435 ESEDEISWQS-SLIVDGQMIYAVVKKDNGKWYLGRFDSN-LSL 475 (489)
T ss_pred eccccccccC-ceEEcCCeEEEEEEcCCCeEEEeecCcc-hHH
Confidence 76543 1111 24446776663 3 2 22246666654 444
No 449
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=34.08 E-value=1.1e+02 Score=21.73 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=18.1
Q ss_pred CEEEEECCCCeEEEEeCC-CCc
Q 019091 201 KVLFGSDGSSMLYQIDPQ-TLK 221 (346)
Q Consensus 201 ~~LyvSdGs~~l~vIDp~-T~k 221 (346)
+.|..|+..+.|+++|+. +|.
T Consensus 16 DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 16 DLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred cEEEEEccCCeEEEEEcccCcc
Confidence 688889999999999998 444
No 450
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=32.95 E-value=3.1e+02 Score=27.99 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=79.9
Q ss_pred eeEEEEEEe---cCCCCcceeEEEecC-C-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE-----eC--
Q 019091 92 TIQVVNEFP---HDPRAFTQGLLYAEN-D-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-----LG-- 159 (346)
Q Consensus 92 t~~Vv~t~p---hd~~~FTqGL~~~~d-~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-----~g-- 159 (346)
.+.++++|- |+-..||---.++-+ + -+.+.+|..| -|+++|+.+++..+.+ -|+|=++ ..
T Consensus 76 ~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G--vIrVid~~~~~~~~~~------~ghG~sINeik~~p~~ 147 (385)
T KOG1034|consen 76 GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG--VIRVIDVVSGQCSKNY------RGHGGSINEIKFHPDR 147 (385)
T ss_pred ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee--EEEEEecchhhhccce------eccCccchhhhcCCCC
Confidence 346677763 566677777777633 3 3666667445 8999999999865544 3333333 22
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEec-C--CCceeE--EeeCCCEEEEECC-CCeEEEEeCCCCcE
Q 019091 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTH-Q--MKDGWG--LATDGKVLFGSDG-SSMLYQIDPQTLKV 222 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-~--~peGwG--Lt~Dg~~LyvSdG-s~~l~vIDp~T~kv 222 (346)
-.|.+..-+++.+-+.|.++..-+.-|-- + ..|=.. ++.||+ -++|-| +.+|.+++..+.+.
T Consensus 148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHH
Confidence 34777788999999999999999888862 2 112222 234566 456777 77888888775443
No 451
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=32.90 E-value=1.1e+02 Score=23.70 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=20.2
Q ss_pred eeeEe-eCC--EEEEEecCCC-eEEEEeCCCCeEEE
Q 019091 239 NELEF-IKG--EVWANVWQTD-CIARISHEDGVVLG 270 (346)
Q Consensus 239 NELE~-~~G--~LyaNv~~sn-~I~vID~~TG~Vv~ 270 (346)
.++|+ .+| ++++..-... .=+.|||.||+|+.
T Consensus 46 ~~ve~~~~g~yev~~~~~dG~~~ev~vD~~tG~V~~ 81 (83)
T PF13670_consen 46 REVEFDDDGCYEVEARDKDGKKVEVYVDPATGEVVK 81 (83)
T ss_pred EEEEEcCCCEEEEEEEECCCCEEEEEEcCCCCeEee
Confidence 35666 343 3554443333 35789999999975
No 452
>PF11178 DUF2963: Protein of unknown function (DUF2963); InterPro: IPR021348 This family of proteins with unknown function appears to be restricted to Mollicutes.
Probab=32.74 E-value=66 Score=23.39 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=23.7
Q ss_pred eEEEEeCCCCcEEEEEEeccCCeeeeeceeeE
Q 019091 211 MLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 211 ~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
.+...||.|++.++.+.=..+|+.+..++|..
T Consensus 10 ~I~eydp~Tg~~iK~t~Y~~DGktI~~I~Eyd 41 (51)
T PF11178_consen 10 YITEYDPQTGKKIKKTYYNPDGKTIKYIYEYD 41 (51)
T ss_pred EEEEECcccCcEeeeEEECCCCCEEEEEEEEC
Confidence 45678899999888888777777766665544
No 453
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=32.73 E-value=7.4e+02 Score=27.66 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=90.7
Q ss_pred CCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCC--CcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019091 103 PRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALET--GKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 103 ~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~T--gkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
......||+++.- +.+|-+.. +...+.+.+++- ++++..-.+ ..+-...+.+..+.+|..+|....-......+
T Consensus 478 g~~~~~~lavD~~~~~~y~tDe--~~~~i~v~~~~g~~~~vl~~~~l-~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~d 554 (877)
T KOG1215|consen 478 GLCIPEGLAVDWIGDNIYWTDE--GNCLIEVADLDGSSRKVLVSKDL-DLPRSIAVDPEKGLMFWTDWGQPPRIERASLD 554 (877)
T ss_pred CccccCcEEEEeccCCceeccc--CCceeEEEEccCCceeEEEecCC-CCccceeeccccCeeEEecCCCCchhhhhcCC
Confidence 4455689999843 46888866 666777777443 345555555 33323334445688999999963322233334
Q ss_pred CcEEEE---EecCCCceeEEeeCCCEEEEECC-CC-eEEEEeCCCCcEEEEEEe-ccCCeeeeeceeeEeeCCEEEEEec
Q 019091 180 LNKLEE---FTHQMKDGWGLATDGKVLFGSDG-SS-MLYQIDPQTLKVIRKDIV-RYKGREVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 180 l~~i~t---i~~~~peGwGLt~Dg~~LyvSdG-s~-~l~vIDp~T~kvi~~I~V-~~~G~pv~~lNELE~~~G~LyaNv~ 253 (346)
+..... +....|.|..+..-.+++|-.|. .. .+.-++-.. +..+ +.. ...+.|+. +....+++|=..|
T Consensus 555 g~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g-~~r~-~~~~~~~~~p~~----~~~~~~~iyw~d~ 628 (877)
T KOG1215|consen 555 GSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDG-QNRR-VVDSEDLPHPFG----LSVFEDYIYWTDW 628 (877)
T ss_pred CCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCC-CceE-EeccccCCCceE----EEEecceeEEeec
Confidence 433333 33334666666666778887774 44 566666433 3222 222 12234543 6677889998888
Q ss_pred CCCeEEEEeCCCCe
Q 019091 254 QTDCIARISHEDGV 267 (346)
Q Consensus 254 ~sn~I~vID~~TG~ 267 (346)
....+.+-....+.
T Consensus 629 ~~~~~~~~~~~~~~ 642 (877)
T KOG1215|consen 629 SNRAISRAEKHKGS 642 (877)
T ss_pred cccceEeeecccCC
Confidence 88766666655553
No 454
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=32.60 E-value=1.3e+02 Score=30.51 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=61.9
Q ss_pred CeEEEEECCCCcEEEEeccCC-CeeEEEEEE--eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeE-EeeCC---
Q 019091 128 SSVRRVALETGKVEAINQMEG-SYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG-LATDG--- 200 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG-Lt~Dg--- 200 (346)
++|+.||..||+.+...+.++ ..-+.++.- .++-++.+. .++.|-++|..+...++++.+..-.|-. .+-|+
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s-sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS-SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec-cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 399999999999999987543 333444443 234566554 4789999999999999999875212222 22333
Q ss_pred CEEEEEC----C-CCeEEEEeCCCCcE
Q 019091 201 KVLFGSD----G-SSMLYQIDPQTLKV 222 (346)
Q Consensus 201 ~~LyvSd----G-s~~l~vIDp~T~kv 222 (346)
+.++... + ...|.++|...-+.
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq 155 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQ 155 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccc
Confidence 4555533 1 45899999876554
No 455
>PF14312 FG-GAP_2: FG-GAP repeat
Probab=32.13 E-value=85 Score=22.37 Aligned_cols=26 Identities=23% Similarity=0.352 Sum_probs=19.9
Q ss_pred ccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019091 145 QMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 145 ~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
......||..+++.++++.+....++
T Consensus 12 ~~~~d~FG~sVai~gd~~vVGA~~~~ 37 (49)
T PF14312_consen 12 GAAGDYFGWSVAISGDTLVVGAPGDD 37 (49)
T ss_pred CCccCcceeEEEEeCCEEEEeeeccC
Confidence 34567899999999999888765443
No 456
>PF11879 DUF3399: Domain of unknown function (DUF3399); InterPro: IPR024587 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The Shal potassium channel was found in Drosophila melanogaster (Fruit fly). Several vertebrate potassium channels with similar amino acid sequences were subsequently found and, together with the D. melanogaster Shal channel, now constitute the Kv4 family. These channels are the primary subunits contributing to transient, voltage-dependent potassium currents in the nervous system (A currents) and the heart (transient outward current), and are inhibited by free fatty acids []. This family can be further divided into 3 subfamilies, designated Kv4.1(KCND1), Kv4.2(KCND2) and Kv4.3(KCND3). This uncharacterised C-terminal domain is associated with the Shal (Kv4) potassium channel.
Probab=32.07 E-value=38 Score=28.53 Aligned_cols=32 Identities=31% Similarity=0.288 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCCccccccccccceeeeccC
Q 019091 23 PSPSPSPSSSSSSSSSCMASNHFSRFRHYNKG 54 (346)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (346)
+|+|||-||..+..++|-...+.+.++--++.
T Consensus 70 ~SrS~SlSS~~g~~~sCC~RR~kr~~~l~ns~ 101 (104)
T PF11879_consen 70 TSRSPSLSSQQGLTTSCCSRRAKRNTRLPNST 101 (104)
T ss_pred CCCCcccccCCCCCcccCCCcccccCCCCCCC
Confidence 35666666666777888887777766644433
No 457
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=32.06 E-value=1e+03 Score=29.01 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=45.9
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC----CCeeEEEEEEeCCEEEEEEeeCCEEEEEE
Q 019091 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME----GSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~----~~~FgeGit~~g~~LY~ltw~~~~v~V~D 176 (346)
-.|++.|||.||++ +-+.|++|-+ +|.+.-.+++. ..-+=.++++..+.||+++-..++|+.+-
T Consensus 368 vala~a~DGSl~VG----DfNyIRRI~~-dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~ 435 (1899)
T KOG4659|consen 368 VALAYAPDGSLIVG----DFNYIRRISQ-DGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVS 435 (1899)
T ss_pred eeEEEcCCCcEEEc----cchheeeecC-CCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEec
Confidence 45778899999998 4468988854 47676666664 23344567777888998888888877764
No 458
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=31.44 E-value=90 Score=22.70 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=27.1
Q ss_pred eEEEEeCCCCEEEEecCCC--CcEEEEEEeecccccc
Q 019091 293 NGIAWDSNRNRIFVTGKLW--PKLYEINLREMKRERK 327 (346)
Q Consensus 293 NGIA~d~~~~~LfVTGK~W--p~l~ev~l~~~~~~~~ 327 (346)
.++|.++++..+||.|... +.+.+|++...+++.-
T Consensus 20 ~~~gr~~~~~~V~v~~~~~~iG~~v~v~I~~~~~~~l 56 (61)
T PF01938_consen 20 QGIGRTDNGKVVFVPGGLPLIGEFVKVRITKAKKNYL 56 (61)
T ss_dssp EEEEEET-TEEEEETT--T--TEEEEEEEEEE-SSEE
T ss_pred EEEEEeCCCeEEEECCCCCCCCCEEEEEEEEeeCCcE
Confidence 5799999999999999999 9999999998776643
No 459
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=31.42 E-value=1.4e+02 Score=29.77 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=31.8
Q ss_pred CCeEEEEeCCC-CcEEEEEEeccC-CeeeeeceeeEee-CC---EEEEEecCCCeEEEEeCCCC
Q 019091 209 SSMLYQIDPQT-LKVIRKDIVRYK-GREVRNLNELEFI-KG---EVWANVWQTDCIARISHEDG 266 (346)
Q Consensus 209 s~~l~vIDp~T-~kvi~~I~V~~~-G~pv~~lNELE~~-~G---~LyaNv~~sn~I~vID~~TG 266 (346)
...|+++|.+| ++++++|.+... + -+..+.-+... || ++||-.. ...|.+||..+.
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~-gl~~~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~~ 241 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSG-GLSSPAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSSA 241 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT--EEEEEEE-TTSSSEE-EEEEEET-TSEEEEEE--TT
T ss_pred CcEEEEEECCCCCceEEEEecCCCCc-cccccEEEeccCCCeEEEEEEEcC-CCcEEEEECCCC
Confidence 45799999999 999999998542 2 11111111111 34 6999875 678899998753
No 460
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=30.73 E-value=1e+02 Score=17.10 Aligned_cols=26 Identities=4% Similarity=0.216 Sum_probs=17.4
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEE
Q 019091 107 TQGLLYAENDTLFESTGLYGRSSVRRVA 134 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iD 134 (346)
...+.+.+++.++.+.+ .++.+++||
T Consensus 15 i~~~~~~~~~~~~~~~~--~d~~~~~~~ 40 (40)
T smart00320 15 VTSVAFSPDGKYLASAS--DDGTIKLWD 40 (40)
T ss_pred eeEEEECCCCCEEEEec--CCCeEEEcC
Confidence 36888887666666666 345777664
No 461
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=30.09 E-value=5.2e+02 Score=26.86 Aligned_cols=206 Identities=18% Similarity=0.199 Sum_probs=114.6
Q ss_pred cCCCCcceeEEEec--CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee------EEEEEEe--CCEEEEEEeeCC
Q 019091 101 HDPRAFTQGLLYAE--NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF------GEGLTLL--GEKLFQVTWLQK 170 (346)
Q Consensus 101 hd~~~FTqGL~~~~--d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F------geGit~~--g~~LY~ltw~~~ 170 (346)
|...-| ||.++| .|+|. +|. -...|+.+...+|. ..+++.|| -|++... .+.+|..---++
T Consensus 210 hk~EGy--~LdWSp~~~g~Ll--sGD-c~~~I~lw~~~~g~----W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 210 HKGEGY--GLDWSPIKTGRLL--SGD-CVKGIHLWEPSTGS----WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred cCccce--eeecccccccccc--cCc-cccceEeeeeccCc----eeecCccccccccchhhhccCCccCceEEeeecCc
Confidence 434444 777776 22332 221 24578888887764 23444444 3555543 356777777789
Q ss_pred EEEEEECCCCcEEEEEecC-C-CceeEEeeCCCE-EEEECC-CCeEEEEeCCCCcEEEEEEe-ccCCeeeeeceeeEee-
Q 019091 171 TGFIYDQNNLNKLEEFTHQ-M-KDGWGLATDGKV-LFGSDG-SSMLYQIDPQTLKVIRKDIV-RYKGREVRNLNELEFI- 244 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~-~-peGwGLt~Dg~~-LyvSdG-s~~l~vIDp~T~kvi~~I~V-~~~G~pv~~lNELE~~- 244 (346)
.+-+.|.........+.+. . .+==.++.+++. |.+|=+ +.++.++|.++++.-.-+.. ..+..|+. -+|+.
T Consensus 281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt---sieW~p 357 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT---SIEWHP 357 (440)
T ss_pred eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee---EEEecc
Confidence 9999999888666655442 1 122346776654 455544 66999999998876532211 22334554 35554
Q ss_pred -CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe-cCCCCcEEEEEEee-
Q 019091 245 -KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT-GKLWPKLYEINLRE- 321 (346)
Q Consensus 245 -~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT-GK~Wp~l~ev~l~~- 321 (346)
+..+++....+|.|..=|...-+=...++-.+ .+|++ +---+.|||- ||. .+-||+..+
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a---------------~~~L~-dlPpQLLFVHqGQk--e~KevhWH~Q 419 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVEADEEEIDQEA---------------AEGLQ-DLPPQLLFVHQGQK--EVKEVHWHRQ 419 (440)
T ss_pred ccCceEEeccCCCcEEEEEeeccCChhhhcccc---------------ccchh-cCCceeEEEecchh--HhhhheeccC
Confidence 44577777677777776665444322222211 11111 1112477776 432 334454432
Q ss_pred ----ccccccCCCchhHHH
Q 019091 322 ----MKRERKDGFNVDTII 336 (346)
Q Consensus 322 ----~~~~~~~~~~~~~~~ 336 (346)
+-.++-+||||+..|
T Consensus 420 iPG~lvsTa~dGfnVfktI 438 (440)
T KOG0302|consen 420 IPGLLVSTAIDGFNVFKTI 438 (440)
T ss_pred CCCeEEEecccceeEEEec
Confidence 345677888887654
No 462
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=30.04 E-value=4.8e+02 Score=26.49 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=51.2
Q ss_pred CCCceeEEeeCCCEEEEEC--CCCeEEEEeCCCCcE---EEEEEeccCCeeeeeceeeEeeCCEEEEEecC-CCeEEEEe
Q 019091 189 QMKDGWGLATDGKVLFGSD--GSSMLYQIDPQTLKV---IRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-TDCIARIS 262 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSd--Gs~~l~vIDp~T~kv---i~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~-sn~I~vID 262 (346)
|.-.-|...|+|+.-|.|+ ..++|.++|..-..- +.++++- -+|+- +=|.|+ +|+-+-.+-| ..+|-++.
T Consensus 230 GaVhaYv~~pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE--~RPL~-lIeAe~-~g~~~~viLQnaetIrlv~ 305 (344)
T PRK02290 230 GAVHAYVRVPGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIE--KRPLL-LIEAEY-GGKRIRTILQNAETIRLVT 305 (344)
T ss_pred CcceeEEEcCCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEe--eccEE-EEEEEe-CCeEEEEEEecCcEEEEEC
Confidence 4446778899999999999 377999999754332 3444443 35753 335566 6665544444 44565554
Q ss_pred CCCCeEEEEEEC
Q 019091 263 HEDGVVLGWVLL 274 (346)
Q Consensus 263 ~~TG~Vv~~I~l 274 (346)
| .|+.+..-++
T Consensus 306 ~-dG~~vsVt~L 316 (344)
T PRK02290 306 P-DGKPVSVVDL 316 (344)
T ss_pred C-CCCEeeeeec
Confidence 4 6876665543
No 463
>PF13854 Kelch_5: Kelch motif
Probab=29.43 E-value=1.6e+02 Score=19.84 Aligned_cols=15 Identities=13% Similarity=0.651 Sum_probs=8.4
Q ss_pred eEEEEEEeCCEEEEE
Q 019091 151 FGEGLTLLGEKLFQV 165 (346)
Q Consensus 151 FgeGit~~g~~LY~l 165 (346)
.+..+...++.||+-
T Consensus 6 ~~hs~~~~~~~iyi~ 20 (42)
T PF13854_consen 6 YGHSAVVVGNNIYIF 20 (42)
T ss_pred cceEEEEECCEEEEE
Confidence 345555566666653
No 464
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=29.18 E-value=5.4e+02 Score=29.34 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=94.3
Q ss_pred eCCEEEEEECCCCcEEEEEecCC----CceeE--------EeeC-CCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCe
Q 019091 168 LQKTGFIYDQNNLNKLEEFTHQM----KDGWG--------LATD-GKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGR 233 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti~~~~----peGwG--------Lt~D-g~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~ 233 (346)
-.+.|+|+|-.+++.+.+++... .--|+ +++. -+-++. +|-++.|.+.|-.+..++-.+.=.. .
T Consensus 33 shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~--~ 110 (1062)
T KOG1912|consen 33 SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN--D 110 (1062)
T ss_pred cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC--c
Confidence 35679999999999999887531 11222 2323 233333 6789999999988877665554422 3
Q ss_pred eeeeceeeEee----CC-EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019091 234 EVRNLNELEFI----KG-EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 234 pv~~lNELE~~----~G-~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
|+. +|-|. +. .+.+++...++|+.-++.||+..=..+.+. ..|-.+.+||=.-|=|.-=
T Consensus 111 ~~q---dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-------------~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 111 SVQ---DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-------------EILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred chh---heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-------------cceeeeeeCCCCcceEEEE
Confidence 432 34444 23 688999999999999999999876665421 2456677777554444333
Q ss_pred CCCCcEEEEEEeeccccccCC
Q 019091 309 KLWPKLYEINLREMKRERKDG 329 (346)
Q Consensus 309 K~Wp~l~ev~l~~~~~~~~~~ 329 (346)
..-++++-.++.+...+.-+|
T Consensus 175 ~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCc
Confidence 356788888887766665555
No 465
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=29.10 E-value=6.3e+02 Score=25.76 Aligned_cols=175 Identities=18% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEcCCCCCCeEEEEECCCCcEEEEeccCC-------------CeeEEEEEEeCC-----EEEEEEeeCCEEEEEECCCC
Q 019091 119 FESTGLYGRSSVRRVALETGKVEAINQMEG-------------SYFGEGLTLLGE-----KLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 119 yeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-------------~~FgeGit~~g~-----~LY~ltw~~~~v~V~D~~tl 180 (346)
|++-| |.+.+|.++|++.-+++.+..+.+ -.|+. +++.++ .+|+.|.. +.+++|.. ..
T Consensus 99 Fvaig-y~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v-m~~~~D~ySSi~L~vGTn~-G~v~~fkI-lp 174 (395)
T PF08596_consen 99 FVAIG-YESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV-MTLGGDGYSSICLLVGTNS-GNVLTFKI-LP 174 (395)
T ss_dssp EEEEE-ETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE-EE-TTSSSEEEEEEEEETT-SEEEEEEE-EE
T ss_pred EEEEE-ecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE-EecCCCcccceEEEEEeCC-CCEEEEEE-ec
Q ss_pred cEEEEEecCCCceeEEeeCC--------------------------------CEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019091 181 NKLEEFTHQMKDGWGLATDG--------------------------------KVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 181 ~~i~ti~~~~peGwGLt~Dg--------------------------------~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
..-+++.++ ..+--...++ .-+++.=+.+.+.++.+.+.+..++..
T Consensus 175 ~~~g~f~v~-~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~- 252 (395)
T PF08596_consen 175 SSNGRFSVQ-FAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF- 252 (395)
T ss_dssp -GGG-EEEE-EEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--
T ss_pred CCCCceEEE-EeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-
Q ss_pred ccCCeeeeeceeeEeeC---CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019091 229 RYKGREVRNLNELEFIK---GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~~---G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
+.+.......-+++.+ +...|.......|.+...-..+-+..+.+.... +....-...++++|+-++
T Consensus 253 -~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~---------d~~~~~~ssis~~Gdi~~ 322 (395)
T PF08596_consen 253 -DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL---------DSRRLSSSSISRNGDIFY 322 (395)
T ss_dssp -SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS------------HHHHTT-EE-TTS-EEE
T ss_pred -ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc---------ccccccccEECCCCCEEE
Q ss_pred EecC
Q 019091 306 VTGK 309 (346)
Q Consensus 306 VTGK 309 (346)
.+|+
T Consensus 323 ~~gp 326 (395)
T PF08596_consen 323 WTGP 326 (395)
T ss_dssp E-SS
T ss_pred EeCc
No 466
>PTZ00118 40S ribosomal protein S4; Provisional
Probab=29.01 E-value=2e+02 Score=28.04 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=17.1
Q ss_pred ecCCCeEEEEeCCCCeEEEEEEC
Q 019091 252 VWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l 274 (346)
....++-++||..+++++..+.+
T Consensus 153 ~ik~~Dtv~i~l~~~kI~~~ikf 175 (262)
T PTZ00118 153 DVKVGDSLRLDLETGKVLEFLKF 175 (262)
T ss_pred cccCCCEEEEECCCCceeeEEec
Confidence 34567777888888888888766
No 467
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=28.85 E-value=44 Score=36.95 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.5
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEE
Q 019091 161 KLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
..||..|.++.+.|+...++..-+
T Consensus 818 ~FWQmvWe~G~~vIV~Lt~l~Eng 841 (1004)
T KOG0793|consen 818 DFWQMVWESGCVVIVMLTPLAENG 841 (1004)
T ss_pred HHHHHHHHcCcEEEEEecChhhcc
Confidence 379999999999999988876655
No 468
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=28.69 E-value=1.3e+02 Score=20.08 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=24.9
Q ss_pred eEEEecCCEEEEEcCCCC----CCeEEEEECCCCcEEEEecc
Q 019091 109 GLLYAENDTLFESTGLYG----RSSVRRVALETGKVEAINQM 146 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg----~s~V~~iDl~Tgkv~~~~~l 146 (346)
+.+.. ++.+|+..|..+ .+.+.+||+.+++-...-++
T Consensus 6 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 6 AAVVV-GNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEE-TTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEE-CCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 34444 589999877543 36788899999876554433
No 469
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.25 E-value=1.5e+02 Score=32.12 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeE-EEEEE--------eCCEEEE--EE--eeCCEEEEEECCCCcEEEEEecCCCc
Q 019091 126 GRSSVRRVALETGKVEAINQMEGSYFG-EGLTL--------LGEKLFQ--VT--WLQKTGFIYDQNNLNKLEEFTHQMKD 192 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~Fg-eGit~--------~g~~LY~--lt--w~~~~v~V~D~~tl~~i~ti~~~~pe 192 (346)
--+.+.++|+.+|++. +...++..++ |=+-+ +++.+.. .+ -+...+.|+|+++++.++++.++.+-
T Consensus 486 ~~~g~vKvDl~~g~~~-~w~~~~~~~~GEP~FVP~p~~~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l~~~ar~~vp~rv 564 (582)
T KOG1285|consen 486 KVSGIVKVDLVTGEVK-KWREGGGRPGGEPIFVPRPGTLEEDDGYIVSVVHDESKEKSFLLILDAKTLEEVARVEVPTRV 564 (582)
T ss_pred CCCeEEEEEecCCcee-eEecCCCccCCCceEecCCCCcccCCcEEEEEEEcCCCCcccEEEEeccccceeeEEecCCCC
Confidence 3478999999999854 3333333333 33222 2222221 11 13455778888888888887765333
Q ss_pred eeEE
Q 019091 193 GWGL 196 (346)
Q Consensus 193 GwGL 196 (346)
++|+
T Consensus 565 P~gf 568 (582)
T KOG1285|consen 565 PYGF 568 (582)
T ss_pred CCcc
Confidence 3343
No 470
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=27.90 E-value=1.3e+02 Score=20.46 Aligned_cols=35 Identities=9% Similarity=0.147 Sum_probs=19.6
Q ss_pred eEEEecCCEEEEEcCCCCC----CeEEEEECCCCcEEEE
Q 019091 109 GLLYAENDTLFESTGLYGR----SSVRRVALETGKVEAI 143 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~----s~V~~iDl~Tgkv~~~ 143 (346)
.....++++||+-.|..+. +.+.+||+++++-...
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 3444456788888775443 3788899999875443
No 471
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=27.56 E-value=6.3e+02 Score=25.19 Aligned_cols=106 Identities=21% Similarity=0.140 Sum_probs=56.9
Q ss_pred cCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC---eeEEEEEEeCCE--EEEE-EeeCCE--EEEEECCCCcEEEE
Q 019091 114 ENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS---YFGEGLTLLGEK--LFQV-TWLQKT--GFIYDQNNLNKLEE 185 (346)
Q Consensus 114 ~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~---~FgeGit~~g~~--LY~l-tw~~~~--v~V~D~~tl~~i~t 185 (346)
|+..+.++|- ..+.+++||+. ||.++.++.+.- -.--|+-+-|.. |-++ +-..++ ++.+|+++. .++.
T Consensus 65 P~kS~vItt~--Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~-~L~s 140 (364)
T COG4247 65 PDKSLVITTV--KKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQ-YLES 140 (364)
T ss_pred cCcceEEEee--ccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCcc-ceee
Confidence 4445777776 56689999986 777777755421 000112222222 2222 222333 456788774 4444
Q ss_pred Ee-----c--C--CCceeEEeeCCC----EEEEECCCC---eEEEEeCCCCcEE
Q 019091 186 FT-----H--Q--MKDGWGLATDGK----VLFGSDGSS---MLYQIDPQTLKVI 223 (346)
Q Consensus 186 i~-----~--~--~peGwGLt~Dg~----~LyvSdGs~---~l~vIDp~T~kvi 223 (346)
|. + . .++|..|-.+.+ .+||++... +-..+|..++++.
T Consensus 141 itD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~ 194 (364)
T COG4247 141 ITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVG 194 (364)
T ss_pred ccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEc
Confidence 42 1 1 245555555543 577787433 5566788777764
No 472
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=27.40 E-value=3e+02 Score=33.78 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=29.0
Q ss_pred eEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019091 241 LEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 241 LE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
|-+.+|+||--.-.+.+|+||||++..-++++-++
T Consensus 369 m~~~nG~L~~R~N~S~~~~~Id~dsL~d~GeViLP 403 (3738)
T KOG1428|consen 369 MYLCNGSLYLRRNYSSCISVIDTDSLLDIGEVILP 403 (3738)
T ss_pred eEeeccEEEEecccceeEEEechhhhhcCCcEecC
Confidence 56779999875556999999999999888888663
No 473
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=27.30 E-value=1.4e+02 Score=32.36 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=27.1
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
.+..=|+++|++..-+-. |.+.-.-|++|+||+++|||.
T Consensus 533 ~m~~~~p~~g~~~rf~t~------------P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 533 QMLTPDPKTGTIKRFLTG------------PIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred ccccCCCccceeeeeccC------------CCcceeecceeCCCCceEEEE
Confidence 344456777776444421 344567899999999999997
No 474
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.23 E-value=2.2e+02 Score=29.63 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=47.7
Q ss_pred CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeC---CCEEEEECCCCeEEEEeCCC
Q 019091 159 GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATD---GKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 159 g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~D---g~~LyvSdGs~~l~vIDp~T 219 (346)
++-|....-.++++-++|..|..++.++..+ ..-|.-+.| ...+|.-+..+.|+|+|...
T Consensus 205 ~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 205 NEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 3435556667899999999999999999876 577887775 45789988889999999654
No 475
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.15 E-value=8.2e+02 Score=26.43 Aligned_cols=127 Identities=9% Similarity=0.058 Sum_probs=72.8
Q ss_pred eeEEEEEEecCCCCcceeEEEe--cCCEEEE---EcCCCCCCeE--EEEECCCCcE----EEEeccCCCeeEEEEEEeCC
Q 019091 92 TIQVVNEFPHDPRAFTQGLLYA--ENDTLFE---STGLYGRSSV--RRVALETGKV----EAINQMEGSYFGEGLTLLGE 160 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~--~d~~Lye---StGlyg~s~V--~~iDl~Tgkv----~~~~~l~~~~FgeGit~~g~ 160 (346)
.++++-.+-.+..|. -..|+ .+.+++. +-+..|+-.+ .+|+...+|+ +.+++++...-.-...+. +
T Consensus 195 klEvL~yirTE~dPl--~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~-E 271 (545)
T PF11768_consen 195 KLEVLSYIRTENDPL--DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS-E 271 (545)
T ss_pred cEEEEEEEEecCCcE--EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc-c
Confidence 467777776666664 44444 2334431 2222233222 2344444443 333466655433323333 3
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE
Q 019091 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV 222 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv 222 (346)
...++-=.++.+.+||..+.. ......+ .|.-..-.|||..+.|.+..++|..+|.+-.-+
T Consensus 272 ~kLvlGC~DgSiiLyD~~~~~-t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 272 DKLVLGCEDGSIILYDTTRGV-TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred ceEEEEecCCeEEEEEcCCCe-eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 455555678999999976542 2222322 466667788999999999999999999765433
No 476
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.11 E-value=1.7e+02 Score=34.40 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=69.3
Q ss_pred CCCcEEEEEecCCCceeEEeeCCCEEEE---ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC
Q 019091 178 NNLNKLEEFTHQMKDGWGLATDGKVLFG---SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (346)
Q Consensus 178 ~tl~~i~ti~~~~peGwGLt~Dg~~Lyv---SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~ 254 (346)
.|+++.+.++. .-.++.+|+....+ +| ...|+++|.++|..-+.++- +|+.+---.-+..+..--+.|+
T Consensus 93 ~t~~v~k~~pi---~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs~s~~~~~----~pl~~s~ts~ek~vf~~~~~wn 164 (1405)
T KOG3630|consen 93 LTFKVEKEIPI---VIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFSESRYETT----VPLKNSATSFEKPVFQLKNVWN 164 (1405)
T ss_pred cceeeeccccc---eEEEeccCCceEEEEEecC-CceEEEEehHhhhhhhhhhc----cccccccchhcccccccccccc
Confidence 46666666663 34578888775544 44 55999999999887664442 1221100010111223334554
Q ss_pred CCe--EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019091 255 TDC--IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 255 sn~--I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..- -.++|..++.+. ...+..+..... ..+...+--.|+|+|.|+.++| |++-+++.+.+.
T Consensus 165 P~vp~n~av~l~dlsl~-V~~~~~~~~~v~--s~p~t~~~Tav~WSprGKQl~i-G~nnGt~vQy~P 227 (1405)
T KOG3630|consen 165 PLVPLNSAVDLSDLSLR-VKSTKQLAQNVT--SFPVTNSQTAVLWSPRGKQLFI-GRNNGTEVQYEP 227 (1405)
T ss_pred CCccchhhhhccccchh-hhhhhhhhhhhc--ccCcccceeeEEeccccceeeE-ecCCCeEEEeec
Confidence 432 234444555431 111111111111 1234455667999999999987 677788765544
No 477
>PLN00036 40S ribosomal protein S4; Provisional
Probab=27.03 E-value=2.2e+02 Score=27.83 Aligned_cols=23 Identities=9% Similarity=0.275 Sum_probs=17.5
Q ss_pred ecCCCeEEEEeCCCCeEEEEEEC
Q 019091 252 VWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l 274 (346)
....++-++||..|++++..+.+
T Consensus 153 ~~k~~Dtv~i~l~~~kI~~~ikf 175 (261)
T PLN00036 153 LIKANDTIKIDLETNKIVDFIKF 175 (261)
T ss_pred ccccCCEEEEeCCCCceeeEEec
Confidence 34577778888888888888866
No 478
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=26.81 E-value=4.2e+02 Score=27.76 Aligned_cols=62 Identities=6% Similarity=0.033 Sum_probs=42.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCC---eeEEEEEEeCCEEEEEEe-eC---CEEEEEECCCCcEEEEEe
Q 019091 126 GRSSVRRVALETGKVEAINQMEGS---YFGEGLTLLGEKLFQVTW-LQ---KTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~---~FgeGit~~g~~LY~ltw-~~---~~v~V~D~~tl~~i~ti~ 187 (346)
...++-++|..++++.....+|.. -++.-.-..++.+|+..- .+ .-|+.||+.|.+..+=+.
T Consensus 365 ~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp~TatAtKGl~ 433 (435)
T PF14298_consen 365 DAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTEDGSDPYIYKIDPATATATKGLK 433 (435)
T ss_pred ccceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeecCCCceeEEEEcCcccccccceE
Confidence 356788999999998887777654 233223346788897632 33 468999999987766444
No 479
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=26.80 E-value=75 Score=27.76 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=17.6
Q ss_pred EeCCCCEEEEecCCCCcEEEEEEee
Q 019091 297 WDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 297 ~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
||+|.+.||++||...+|+-.++..
T Consensus 18 yD~dt~llyl~gKGD~~ir~yEv~~ 42 (136)
T PF08954_consen 18 YDEDTNLLYLAGKGDGNIRYYEVSD 42 (136)
T ss_dssp E-TTT-EEEEEETT-S-EEEEEE-S
T ss_pred EcCCCCEEEEEeccCcEEEEEEEcC
Confidence 9999999999999999887777643
No 480
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=26.79 E-value=61 Score=26.49 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=16.0
Q ss_pred CCCeEEEEECCCCcEEEEecc
Q 019091 126 GRSSVRRVALETGKVEAINQM 146 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l 146 (346)
|.--|.++|.+||+|++++|-
T Consensus 66 ~~~vVkViD~~T~eVIRqIP~ 86 (107)
T PF03646_consen 66 GRVVVKVIDKETGEVIRQIPP 86 (107)
T ss_dssp TEEEEEEEETTT-SEEEEE-H
T ss_pred CcEEEEEEECCCCcEEEeCCc
Confidence 445788999999999999863
No 481
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=26.00 E-value=4.1e+02 Score=29.42 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=0.0
Q ss_pred EEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC---CC---ceeEEee-CCCEEEEECCCCeEEEEe
Q 019091 155 LTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MK---DGWGLAT-DGKVLFGSDGSSMLYQID 216 (346)
Q Consensus 155 it~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---~p---eGwGLt~-Dg~~LyvSdGs~~l~vID 216 (346)
++...+.||+. .++++.+|+.-+++..+++..+ .+ +-+-+.+ +.+|+..|. .++||.+|
T Consensus 238 f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~-~nkIyLld 303 (670)
T PF10395_consen 238 FCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSV-NNKIYLLD 303 (670)
T ss_pred EEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEc-CCEEEEEe
No 482
>PTZ00223 40S ribosomal protein S4; Provisional
Probab=25.77 E-value=2.6e+02 Score=27.43 Aligned_cols=23 Identities=4% Similarity=-0.149 Sum_probs=17.1
Q ss_pred ecCCCeEEEEeCCCCeEEEEEEC
Q 019091 252 VWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l 274 (346)
....++-++||..+++++..+.+
T Consensus 150 ~~k~~Dtv~i~l~~~kI~~~ikf 172 (273)
T PTZ00223 150 RTSRGDTLVYNVKEKKVVDLIKN 172 (273)
T ss_pred cccCCCEEEEECCCCeeeEEEec
Confidence 34567777888888888887766
No 483
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.32 E-value=85 Score=32.28 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=59.3
Q ss_pred eeEEEEEEec-C---CCCc------ceeEEEecCCEEEEEcCC-----CCCCeEEEEECCCCcEEEEeccCCCeeEEEEE
Q 019091 92 TIQVVNEFPH-D---PRAF------TQGLLYAENDTLFESTGL-----YGRSSVRRVALETGKVEAINQMEGSYFGEGLT 156 (346)
Q Consensus 92 t~~Vv~t~ph-d---~~~F------TqGL~~~~d~~LyeStGl-----yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit 156 (346)
+++++.++-. | ..|| +.|.+.++.+..+||+-- .-.-.|..+|+. ||++....++.+.++
T Consensus 115 ~v~~~~~~~L~Dp~~k~pf~i~~~~~~~ralt~~d~~~~s~~~~~igdefgP~l~~f~~~-Gk~~~~~~~~~~~~~---- 189 (391)
T COG4222 115 KVTPLDTTFLSDPNKKTPFPITGEDPEGRALTPADFDVESSQGAWIGDEFGPYLLEFDAN-GKLVRVLEVPVRFLP---- 189 (391)
T ss_pred ceEEeEEEEeecCCCCCCccccccCchhhcccCCCcceeeccccccccccCcceEEECCC-CccccccccccccCc----
Confidence 4556666532 2 2354 345556555556666431 112467777777 888888777766544
Q ss_pred EeCCEEEEEEeeCCEEEEEECCCCcEEEEEec-CCCceeEEeeCCCEEEEE-CC---------------CCeEEEEeCCC
Q 019091 157 LLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH-QMKDGWGLATDGKVLFGS-DG---------------SSMLYQIDPQT 219 (346)
Q Consensus 157 ~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-~~peGwGLt~Dg~~LyvS-dG---------------s~~l~vIDp~T 219 (346)
.++.. .+.. ..=||.++++|+++||.. .+ .-++.++|+++
T Consensus 190 ~~~p~-----------------------g~~~n~gfEglait~d~~~L~~~le~~l~~d~~~~d~~~~~~lRil~~d~~~ 246 (391)
T COG4222 190 PDNPK-----------------------GLRNNLGFEGLAITPDGKKLYALLEGALAQDGNKADPTGGSPLRILEYDLAT 246 (391)
T ss_pred CCCcc-----------------------ccccccceeeEEecCCCceEEEEEeccccccccccCcccccceEEEEEeccc
Confidence 33322 1211 124888999999998873 22 11466677777
Q ss_pred CcEE
Q 019091 220 LKVI 223 (346)
Q Consensus 220 ~kvi 223 (346)
.+..
T Consensus 247 ~~~~ 250 (391)
T COG4222 247 KQWT 250 (391)
T ss_pred Cccc
Confidence 6655
No 484
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=24.94 E-value=4.1e+02 Score=30.56 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=63.8
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEEeCCEEEEEEeeCC-EEEEEE
Q 019091 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWLQK-TGFIYD 176 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~~g~~LY~ltw~~~-~v~V~D 176 (346)
=|+...| -+.++.||+...|.. ++-+++.|+++++++..-..++ .+.|. +-...+ ++.||.+. +..+.+
T Consensus 173 GHeG~iF--~i~~s~dg~~i~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~--~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 173 GHEGSIF--SIVTSLDGRYIASVS--DDRSIRLWPIDSREVLGCTGFGHSARVWA--CCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred ccCCceE--EEEEccCCcEEEEEe--cCcceeeeecccccccCcccccccceeEE--EEeccc--eeEEeccceEEEEEe
Confidence 3666776 677777888777776 6779999999999987633332 33333 333344 44444433 233332
Q ss_pred CCCCcEEEEEecC-CCceeEEe-eCCCEEEEECC-CCeEEEEeCCCCcE
Q 019091 177 QNNLNKLEEFTHQ-MKDGWGLA-TDGKVLFGSDG-SSMLYQIDPQTLKV 222 (346)
Q Consensus 177 ~~tl~~i~ti~~~-~peGwGLt-~Dg~~LyvSdG-s~~l~vIDp~T~kv 222 (346)
-..+++..|..- .+.=|++. +++..+.+|=| ++.+..+|..+...
T Consensus 245 -~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 245 -VNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred -cccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 233333344321 23334443 34555555554 55677777655444
No 485
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.24 E-value=3.4e+02 Score=25.24 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=11.2
Q ss_pred eeCCCEEEEECCCCeEEEEeCCCCc
Q 019091 197 ATDGKVLFGSDGSSMLYQIDPQTLK 221 (346)
Q Consensus 197 t~Dg~~LyvSdGs~~l~vIDp~T~k 221 (346)
..++++|.+-..+..+|++|..+++
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k 43 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGK 43 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCe
Confidence 3344444443334445555544444
No 486
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=24.18 E-value=2.4e+02 Score=19.27 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=26.1
Q ss_pred CEEEEEcCCC-----CCCeEEEEECCCCcEEEEeccCCCeeEEEEE
Q 019091 116 DTLFESTGLY-----GRSSVRRVALETGKVEAINQMEGSYFGEGLT 156 (346)
Q Consensus 116 ~~LyeStGly-----g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit 156 (346)
+++|+-.|.. ..+.+.++|+++++-...-.+|..-++..++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~ 47 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTAT 47 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEE
Confidence 4666665543 1367899999999776554555555555544
No 487
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=24.17 E-value=5.5e+02 Score=26.40 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=59.1
Q ss_pred EEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCEE--EEEECCCCcEEEE
Q 019091 111 LYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTG--FIYDQNNLNKLEE 185 (346)
Q Consensus 111 ~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~v--~V~D~~tl~~i~t 185 (346)
-.+||| +++.++. =+.+|.+|.+.|-+.....-..... .|++. +|+.--+++-++-+= -+..-+...++++
T Consensus 98 ~WSPdgrhiL~tse--F~lriTVWSL~t~~~~~~~~pK~~~--kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~ 173 (447)
T KOG4497|consen 98 SWSPDGRHILLTSE--FDLRITVWSLNTQKGYLLPHPKTNV--KGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKE 173 (447)
T ss_pred eECCCcceEeeeec--ceeEEEEEEeccceeEEecccccCc--eeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHh
Confidence 446999 5665554 5689999999988764332222222 44555 444444445443322 2233345566777
Q ss_pred EecC--CCceeEEeeCCCEEEEECC--CCeEEEEe
Q 019091 186 FTHQ--MKDGWGLATDGKVLFGSDG--SSMLYQID 216 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~LyvSdG--s~~l~vID 216 (346)
|++. .-.|..-+|||.+|-|=|. .-.|+...
T Consensus 174 f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 174 FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred cCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 7654 2356667888888888663 55555444
No 488
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.03 E-value=93 Score=33.75 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=85.0
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCC-cEEE----Eecc--CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019091 115 NDTLFESTGLYGRSSVRRVALETG-KVEA----INQM--EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tg-kv~~----~~~l--~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
|..-|+|+. .+.+|..|.++.. .-+. +... ...+ -..+....+.-|++.- ++-+.+.|+--++.++++.
T Consensus 746 NENSFiSAS--kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~-i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 746 NENSFISAS--KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKP-IHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cccceeecc--CCceEEEEEeccccCccccceeeeEhhhccCc-ccceeeeeccceeeec-cCcceeecccccchhHhhh
Confidence 445667766 4557777766541 1111 1111 1111 0112222222244332 5678889998888877664
Q ss_pred cCCCceeE---Ee--e-CCCEEEEE-CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEecCCCeEE
Q 019091 188 HQMKDGWG---LA--T-DGKVLFGS-DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQTDCIA 259 (346)
Q Consensus 188 ~~~peGwG---Lt--~-Dg~~LyvS-dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv~~sn~I~ 259 (346)
-..++|-| .+ . |...+..- .-.++|-.+|....+-+..+.|.....|-...-.+...+ |.-.|.-....+|+
T Consensus 822 dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~ 901 (1034)
T KOG4190|consen 822 DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIA 901 (1034)
T ss_pred cCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEE
Confidence 32234433 22 1 33333332 236799999999999999999976433321112244443 33223333478999
Q ss_pred EEeCCCCeEEEEE
Q 019091 260 RISHEDGVVLGWV 272 (346)
Q Consensus 260 vID~~TG~Vv~~I 272 (346)
..|..+|+|+..+
T Consensus 902 ~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 902 ILDARNGKVINSW 914 (1034)
T ss_pred EEecCCCceeccC
Confidence 9999999998754
No 489
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=23.72 E-value=2.4e+02 Score=19.13 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=24.6
Q ss_pred CEEEEEEeeCC-EEEEEECCCCcEEEEEec--CCCceeEEe
Q 019091 160 EKLFQVTWLQK-TGFIYDQNNLNKLEEFTH--QMKDGWGLA 197 (346)
Q Consensus 160 ~~LY~ltw~~~-~v~V~D~~tl~~i~ti~~--~~peGwGLt 197 (346)
++||=++|..+ .+.+-+.+--....-+.. ..|+|.++.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence 47888999999 888888664443333332 356766654
No 490
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=23.70 E-value=2.5e+02 Score=27.24 Aligned_cols=53 Identities=15% Similarity=0.039 Sum_probs=38.5
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEe----eC-C-CEEEEECCCCeEEEE
Q 019091 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA----TD-G-KVLFGSDGSSMLYQI 215 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt----~D-g-~~LyvSdGs~~l~vI 215 (346)
.|.+.| .++.++++|++.+.++.++..+. ...-++ .| . -+++|+-+++.||.|
T Consensus 197 cLViGT-E~~~i~iLd~~af~il~~~~lps-vPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 197 CLVIGT-ESGEIYILDPQAFTILKQVQLPS-VPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred eEEEEe-cCCeEEEECchhheeEEEEecCC-CceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 466666 46999999999999999998862 222332 23 3 478888888888876
No 491
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=1.7e+02 Score=28.75 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred EEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeC----CEEEEEE-eeCCEEEEE------ECCCCcEEEEE
Q 019091 119 FESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLG----EKLFQVT-WLQKTGFIY------DQNNLNKLEEF 186 (346)
Q Consensus 119 yeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g----~~LY~lt-w~~~~v~V~------D~~tl~~i~ti 186 (346)
|+|.| -++.|.+|+.++++-+....| +..-|-.-++... .+-+++. -++++++++ .+-+.+++++|
T Consensus 178 lvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f 255 (299)
T KOG1332|consen 178 LVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF 255 (299)
T ss_pred eeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Q ss_pred ecC-CCceeEEeeCCCEEEEECCCCeEEEE
Q 019091 187 THQ-MKDGWGLATDGKVLFGSDGSSMLYQI 215 (346)
Q Consensus 187 ~~~-~peGwGLt~Dg~~LyvSdGs~~l~vI 215 (346)
+.. -.--|.++ |..|-||.|+|.+..+
T Consensus 256 ~~~~w~vSWS~s--Gn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 256 PDVVWRVSWSLS--GNILAVSGGDNKVTLW 283 (299)
T ss_pred CcceEEEEEecc--ccEEEEecCCcEEEEE
No 492
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=23.58 E-value=8.1e+02 Score=27.70 Aligned_cols=159 Identities=9% Similarity=-0.049 Sum_probs=97.9
Q ss_pred EEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-CC-ceeEEeeC--C-CEEEEECCCCeEEEEeCCCCcEEEEEEec
Q 019091 155 LTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MK-DGWGLATD--G-KVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 155 it~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~p-eGwGLt~D--g-~~LyvSdGs~~l~vIDp~T~kvi~~I~V~ 229 (346)
+..+++.+++.+ .+.|-||...|+..+..++-- .| -+..+.+. . ..+|+.--+..|.+.|=...++++++.++
T Consensus 24 fSnD~k~l~~~~--~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~ 101 (792)
T KOG1963|consen 24 FSNDAKFLFLCT--GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN 101 (792)
T ss_pred cccCCcEEEEee--CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC
Confidence 344556666665 789999999999999876531 11 11223332 2 45677666789999999999999999886
Q ss_pred cCCeeeeecee-eEeeCC--EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019091 230 YKGREVRNLNE-LEFIKG--EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 230 ~~G~pv~~lNE-LE~~~G--~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
. +++-++- +...+. .+|++...-..++....+..+-..++.+........+ .......++-|++.+.+...++
T Consensus 102 ~---~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d-~~~~~~~~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 102 L---PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGD-FLKEHQEPKSIVDNNSGEFKGI 177 (792)
T ss_pred C---ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchh-hhhhhcCCccEEEcCCceEEEE
Confidence 5 3333322 222232 4556655445555566677776666654222111000 0011123788999999999999
Q ss_pred ecCCCCcEEEEEE
Q 019091 307 TGKLWPKLYEINL 319 (346)
Q Consensus 307 TGK~Wp~l~ev~l 319 (346)
+-.....+|.+.=
T Consensus 178 ~~~~~~~~~~v~~ 190 (792)
T KOG1963|consen 178 VHMCKIHIYFVPK 190 (792)
T ss_pred EEeeeEEEEEecc
Confidence 9888877777754
No 493
>PLN02772 guanylate kinase
Probab=22.41 E-value=3.6e+02 Score=27.84 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=45.2
Q ss_pred EEEEEEeCCEEEEEEe------eCCEEEEEECCCCcEE-----EEEecCCCceeEEe-eCCCEEEEEC-C---CCeEEEE
Q 019091 152 GEGLTLLGEKLFQVTW------LQKTGFIYDQNNLNKL-----EEFTHQMKDGWGLA-TDGKVLFGSD-G---SSMLYQI 215 (346)
Q Consensus 152 geGit~~g~~LY~ltw------~~~~v~V~D~~tl~~i-----~ti~~~~peGwGLt-~Dg~~LyvSd-G---s~~l~vI 215 (346)
++.....++++|+--- ..+.+++||+.|.+-. ++.|.+ .+|...+ -+.++|+|=. | ++.++++
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~-r~GhSa~v~~~~rilv~~~~~~~~~~~w~l 105 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKP-CKGYSAVVLNKDRILVIKKGSAPDDSIWFL 105 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCC-CCcceEEEECCceEEEEeCCCCCccceEEE
Confidence 4566777889997531 2468999999988654 444544 4555544 4566776654 2 6789998
Q ss_pred eCCCC
Q 019091 216 DPQTL 220 (346)
Q Consensus 216 Dp~T~ 220 (346)
...|-
T Consensus 106 ~~~t~ 110 (398)
T PLN02772 106 EVDTP 110 (398)
T ss_pred EcCCH
Confidence 87773
No 494
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.57 E-value=1.1e+03 Score=25.81 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=75.1
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecCCC-ceeEEeeCCCEEEE-EC------CCCeEEEEeCCCCcEEEEEEeccC
Q 019091 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFG-SD------GSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~p-eGwGLt~Dg~~Lyv-Sd------Gs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
+.||+.-...+.++..|.+.++++.+-.++.. .-..+++|++.-=+ +. ..+.|.-|||.- +-...+.|.+
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv-~~~~kl~~~q- 423 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV-QGKNKLAVVQ- 423 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccc-cCcceeeeee-
Confidence 56788778889999999999999999887521 12235665432211 11 158999999972 1112333322
Q ss_pred CeeeeeceeeEe----eCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019091 232 GREVRNLNELEF----IKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 232 G~pv~~lNELE~----~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
++.+..-|...+ -+|+|-|..- ...|-.-|- .|+- +.-.+++| ++-.-+|-.+.+|+.+.-|
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~-~GdIRLYdr-i~~~-AKTAlPgL-----------G~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSL-KGDIRLYDR-IGRR-AKTALPGL-----------GDAIKHVDVTADGKWILAT 489 (644)
T ss_pred ccccccccccceeeecCCceEEEeec-CCcEEeehh-hhhh-hhhccccc-----------CCceeeEEeeccCcEEEEe
Confidence 222211122211 1456555442 344444443 3221 11112121 4456778899999999988
Q ss_pred cCCC
Q 019091 308 GKLW 311 (346)
Q Consensus 308 GK~W 311 (346)
.|..
T Consensus 490 c~ty 493 (644)
T KOG2395|consen 490 CKTY 493 (644)
T ss_pred cccE
Confidence 7764
No 495
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.54 E-value=8.8e+02 Score=24.82 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=55.7
Q ss_pred eEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEec--CCCcee---EEeeCCCEE
Q 019091 129 SVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH--QMKDGW---GLATDGKVL 203 (346)
Q Consensus 129 ~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~--~~peGw---GLt~Dg~~L 203 (346)
+-..||.+||++++.+.=...-.-+-.+.-..+|.+..-++-+--..|-. +-+..+.+ +..+-. .++.|.+.+
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~dd~vV 372 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTDDRVV 372 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecCCcee
Confidence 45679999999887764322222222233346777777666666666643 34444443 111211 233344422
Q ss_pred EEECCCCeEEEEeCCCCcE-EEEEEecc
Q 019091 204 FGSDGSSMLYQIDPQTLKV-IRKDIVRY 230 (346)
Q Consensus 204 yvSdGs~~l~vIDp~T~kv-i~~I~V~~ 230 (346)
-.| .+.+|-++|..+++- +++|....
T Consensus 373 SgS-DDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 373 SGS-DDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred ecC-CCceEEEeeeccccCcceeeecCC
Confidence 222 367999999998764 67777754
No 496
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=21.51 E-value=1.4e+02 Score=32.40 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=38.4
Q ss_pred eeEEEecCCEEEEEcCCCCC---C---eEE---EEECCCCcEEEEeccC--CCeeEEEEEEeCCEEEEEE
Q 019091 108 QGLLYAENDTLFESTGLYGR---S---SVR---RVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~---s---~V~---~iDl~Tgkv~~~~~l~--~~~FgeGit~~g~~LY~lt 166 (346)
-||.|++.|+||+.|-.+++ + .+. .=|.++|++.+...-| .+.=|.-.+++++.+|+.-
T Consensus 503 Dnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 503 DNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred CceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 58999999999999865442 2 111 1256677777766443 3444555555677888865
No 497
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=21.50 E-value=1.7e+02 Score=26.45 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCcccccccccccee
Q 019091 26 SPSPSSSSSSSSSCMASNHFSRFR 49 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~ 49 (346)
++++++++.++++-|.+..++--+
T Consensus 29 s~t~~s~~~~~ssGlS~knknIVI 52 (154)
T PF04478_consen 29 SSTSSSSNNSSSSGLSSKNKNIVI 52 (154)
T ss_pred CCCcCCCCCCCCCCCCcCCccEEE
Confidence 333333343444445444444444
No 498
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=21.40 E-value=3.2e+02 Score=25.06 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=37.9
Q ss_pred CCCCceeeeEEEEEEecCCCCcce-eEEEe------------cCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc
Q 019091 85 DQSPSIYTIQVVNEFPHDPRAFTQ-GLLYA------------ENDTLFESTGLYGRSSVRRVALETGKVEAINQM 146 (346)
Q Consensus 85 ~~~~~~~t~~Vv~t~phd~~~FTq-GL~~~------------~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l 146 (346)
...+..++.+...+.+.+....++ |=.+. |++.+.+++| +.|..||++..++......
T Consensus 36 ~~~i~~~s~~f~q~~~~g~~~~~~~g~~~~kkP~~~R~~~~~p~~~~ivsdG----~~v~iydp~~~q~~~~~~~ 106 (211)
T COG2834 36 LAKVKSYSASFTQTVESGSGKQTQEGKLWIKRPNLFRWEYESPDEQVIVSDG----KTVWIYDPDLEQVTKTWLS 106 (211)
T ss_pred HHhhccceeEEEEEEEcCCCceEEEEEEEEecCCeEEEEecCCCCcEEEECC----CEEEEECCCCceEEEEecC
Confidence 456667777888877776666555 43322 2234666666 5888999998887776643
No 499
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=21.28 E-value=1.7e+02 Score=20.11 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=21.5
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEE
Q 019091 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVA 134 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iD 134 (346)
...+++| +++..+ +-+.+.++-.|.+++. .|.+.|.+||
T Consensus 4 ~~~Q~i~~~~~~~~-e~F~i~~~~fl~~a~~-~~~s~Iy~Wd 43 (44)
T PF03736_consen 4 VPFQTIPTRGARDV-EPFSIGGDQFLAVASF-FGDSQIYRWD 43 (44)
T ss_pred ccEEEeCccceeEE-EEEEECCEEEEEEEeC-CCCCEEEEeC
Confidence 3456666 444444 4555533223444543 5678888886
No 500
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.28 E-value=2.2e+02 Score=30.10 Aligned_cols=65 Identities=11% Similarity=0.232 Sum_probs=0.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC-------------EEEEEEeeCCEEEEEECCC--CcEEEEEecC--C
Q 019091 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGE-------------KLFQVTWLQKTGFIYDQNN--LNKLEEFTHQ--M 190 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~-------------~LY~ltw~~~~v~V~D~~t--l~~i~ti~~~--~ 190 (346)
.+|.++|+.||+. ....++++-|++-.....+ .+|=.+-....++|+|+++ .+.|.++..+ .
T Consensus 399 ~~l~k~D~~tg~~-~~~~~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~l~Lp~~v 477 (490)
T COG3670 399 QTLAKHDLETGTS-QVYSFGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIARLALPQRV 477 (490)
T ss_pred ceeEEEeccCCcE-EEEecCCCCcccccccccCCCCCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceEEeccccc
Q ss_pred Cce
Q 019091 191 KDG 193 (346)
Q Consensus 191 peG 193 (346)
|.|
T Consensus 478 P~g 480 (490)
T COG3670 478 PYG 480 (490)
T ss_pred ccc
Done!