RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019093
(346 letters)
>gnl|CDD|178209 PLN02599, PLN02599, dihydroorotase.
Length = 364
Score = 684 bits (1767), Expect = 0.0
Identities = 271/344 (78%), Positives = 300/344 (87%), Gaps = 1/344 (0%)
Query: 1 MELTLTQPDDWHLHLRDGDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILK 60
ELT+T+PDDWHLHLRDG L AVVPHS H+GRAIVMPNLKPP+TTTA A+AYRE I+K
Sbjct: 21 TELTITRPDDWHLHLRDGAKLAAVVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMK 80
Query: 61 ALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCV 120
ALP S+F PLMTLYLTD T+P+EIK A+ +GVVFAVKLYPAGATTNSQ GVTDL GKC+
Sbjct: 81 ALPPGSSFEPLMTLYLTDNTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDL-GKCL 139
Query: 121 HVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA 180
VLEEM EQ MPLLVHGEVTDP VDIFDREKVFIDTIL PL+Q+LPQLK+VMEHITTMDA
Sbjct: 140 PVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQKLPQLKIVMEHITTMDA 199
Query: 181 VKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 240
V+FVESC +G VAATVTPQHL+LNRNALFQGGL+PHNYCLPVLKREIHR+A+V A TSGS
Sbjct: 200 VEFVESCGDGNVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGS 259
Query: 241 RKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDF 300
+KFFLGTDSAPH + KE +CGCAGIY+APVALSLYAK FEE GALDKLEAFTSFNGPDF
Sbjct: 260 KKFFLGTDSAPHPKRAKEASCGCAGIYSAPVALSLYAKAFEEAGALDKLEAFTSFNGPDF 319
Query: 301 YGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQPS 344
YGLPRNTS I L K WKVPEA+SF G ++PMFAG T+ W
Sbjct: 320 YGLPRNTSTITLVKSAWKVPEAYSFGGGTVVPMFAGETIPWSVV 363
>gnl|CDD|235474 PRK05451, PRK05451, dihydroorotase; Provisional.
Length = 345
Score = 651 bits (1682), Expect = 0.0
Identities = 223/342 (65%), Positives = 261/342 (76%), Gaps = 2/342 (0%)
Query: 1 MELTLTQPDDWHLHLRDGDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILK 60
LT+ +PDDWHLHLRDG +LKAVVP++ +GRAIVMPNL PP+TT A A+AYRE IL
Sbjct: 3 QTLTIRRPDDWHLHLRDGAMLKAVVPYTARQFGRAIVMPNLVPPVTTVAQALAYRERILA 62
Query: 61 ALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCV 120
ALPA SNF PLMTLYLTD T PDE++ A+ +GVV A KLYPAGATTNS GVTD+ K
Sbjct: 63 ALPAGSNFEPLMTLYLTDNTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDI-EKIY 121
Query: 121 HVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA 180
VLE M + MPLLVHGEVTDP +DIFDRE VFID +L+PL +R P+LK+V EHITT DA
Sbjct: 122 PVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRFPKLKIVFEHITTKDA 181
Query: 181 VKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 240
V +V + +AAT+TP HL++NRN + GG+RPH YCLP+LKRE HRQA+ A TSG+
Sbjct: 182 VDYVREAND-NLAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGN 240
Query: 241 RKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDF 300
KFFLGTDSAPH R KE ACGCAGI++AP AL LYA+VFEE GALDKLEAF S NGPDF
Sbjct: 241 PKFFLGTDSAPHARHAKESACGCAGIFSAPAALELYAEVFEEAGALDKLEAFASLNGPDF 300
Query: 301 YGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQ 342
YGLPRNT I L + PW VPE+ F ++P AG TL W
Sbjct: 301 YGLPRNTDTITLVREPWTVPESIPFGDETVVPFRAGETLRWS 342
>gnl|CDD|223495 COG0418, PyrC, Dihydroorotase [Nucleotide transport and
metabolism].
Length = 344
Score = 558 bits (1439), Expect = 0.0
Identities = 216/342 (63%), Positives = 261/342 (76%), Gaps = 2/342 (0%)
Query: 1 MELTLTQPDDWHLHLRDGDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILK 60
ELT+ +PDDWHLHLRDG +LKAVVP++ +GRAI+MPNL PP+TT A A+AYRE ILK
Sbjct: 3 QELTIRRPDDWHLHLRDGAMLKAVVPYTSRGFGRAIIMPNLVPPVTTVADALAYRERILK 62
Query: 61 ALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCV 120
A+PA FTPLMTLYLTD+T+P+E++ A+ GV+ AVKLYPAGATTNS GVTD+ K
Sbjct: 63 AVPAGHRFTPLMTLYLTDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIE-KIY 121
Query: 121 HVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA 180
VLE M + MPLLVHGEVTD VDIFDRE FI+++L+PL QR P+LK+V+EHITT DA
Sbjct: 122 PVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQRFPKLKIVLEHITTKDA 181
Query: 181 VKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 240
V++V+ +AAT+TP HL+LNRN + GG+RPH +CLP+LKRE HR+A+ A TSG
Sbjct: 182 VEYVKDA-NNNLAATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGH 240
Query: 241 RKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDF 300
KFFLGTDSAPH R RKE ACGCAGI++AP AL LYA+VFEE ALD LEAF S NGP F
Sbjct: 241 PKFFLGTDSAPHARSRKESACGCAGIFSAPFALPLYAEVFEEENALDNLEAFASDNGPKF 300
Query: 301 YGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQ 342
YGLPRN I L K W+VPE+ F ++P AG TL W
Sbjct: 301 YGLPRNDKTITLVKEEWQVPESIPFGDDIVVPFRAGETLSWS 342
>gnl|CDD|238619 cd01294, DHOase, Dihydroorotase (DHOase) catalyzes the reversible
interconversion of carbamoyl aspartate to
dihydroorotate, a key reaction in the pyrimidine
biosynthesis. In contrast to the large polyfunctional
CAD proteins of higher organisms, this group of DHOases
is monofunctional and mainly dimeric.
Length = 335
Score = 554 bits (1429), Expect = 0.0
Identities = 205/339 (60%), Positives = 247/339 (72%), Gaps = 4/339 (1%)
Query: 3 LTLTQPDDWHLHLRDGDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKAL 62
LT+ +PDD HLHLRDG +LK V+P++ + RAIVMPNLKPP+TTTA A+AYRE IL A
Sbjct: 1 LTIPRPDDMHLHLRDGAMLKLVLPYTARGFSRAIVMPNLKPPVTTTADALAYRERILAAD 60
Query: 63 PASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHV 122
P NFTPLMTLYLT+ T+P+E++ A+K G + VKLYPAGATTNSQ GVTD K V
Sbjct: 61 P-GPNFTPLMTLYLTENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTD-LEKIYPV 118
Query: 123 LEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVK 182
LE M + MPLLVHGEV D +D+ DRE FI +L+PL QR P+LK+V+EHITT DAV+
Sbjct: 119 LEAMQKLGMPLLVHGEVPDFKIDVLDREAKFI-PVLEPLAQRFPKLKIVLEHITTADAVE 177
Query: 183 FVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRK 242
+V+SC E VAAT+TP HL+L R+ L GGL PH YC PV KR R+A+ A TSG K
Sbjct: 178 YVKSCNEN-VAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPK 236
Query: 243 FFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYG 302
FFLG+DSAPH + KE +CGCAGI++AP+AL A+VFEE ALDKLEAF S NGP+FYG
Sbjct: 237 FFLGSDSAPHPKSNKESSCGCAGIFSAPIALPYLAEVFEEHNALDKLEAFASDNGPNFYG 296
Query: 303 LPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEW 341
LP N I L K PWKVPE F ++P AG TL W
Sbjct: 297 LPPNKKTITLVKEPWKVPEKIPFGNNGVVPFRAGETLRW 335
>gnl|CDD|129935 TIGR00856, pyrC_dimer, dihydroorotase, homodimeric type. This
homodimeric form of dihydroorotase is less common in
microbial genomes than a related dihydroorotase that
appears in a complex with aspartyltranscarbamoylase or
as a homologous domain in multifunctional proteins of
pyrimidine biosynthesis in higher eukaryotes [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 341
Score = 470 bits (1210), Expect = e-167
Identities = 203/341 (59%), Positives = 254/341 (74%), Gaps = 2/341 (0%)
Query: 2 ELTLTQPDDWHLHLRDGDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKA 61
ELT+ +PDDWHLHLRDG +LKAV+P++ + RAIVMPNL PP+TT AAVAYRE IL A
Sbjct: 1 ELTIRRPDDWHLHLRDGAMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDA 60
Query: 62 LPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVH 121
+PA +FTPLMTLYLTD+ +P+E++ A+ GVV AVKLYPAGATTNS GVTD +
Sbjct: 61 VPAGHDFTPLMTLYLTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTD-IDAIMP 119
Query: 122 VLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAV 181
VLE M + +PLL+HGEVT +DIFDRE FI+++L+PL QR P LKVV+EHITT DA+
Sbjct: 120 VLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQRFPALKVVLEHITTKDAI 179
Query: 182 KFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSR 241
+VE +AAT+TPQHL+ RN L GG+ PH YCLP+LKR IH+QA++ SG
Sbjct: 180 DYVEDGNNR-LAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFP 238
Query: 242 KFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFY 301
KFFLGTDSAPH R RKE +CGCAG ++AP AL YA+VFEEM AL+ LEAF S NGP FY
Sbjct: 239 KFFLGTDSAPHARHRKESSCGCAGCFSAPTALPSYAEVFEEMNALENLEAFCSDNGPQFY 298
Query: 302 GLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQ 342
GLP N++KI+L K ++PE+ + + ++P AG TL W
Sbjct: 299 GLPVNSTKIELVKKEQQIPESIALTDDTLVPFRAGETLSWS 339
>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 69.2 bits (169), Expect = 2e-13
Identities = 56/347 (16%), Positives = 95/347 (27%), Gaps = 76/347 (21%)
Query: 10 DWHLHLRD----GDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPAS 65
D H+HL G+ + R+ L P T+ ++ R+ I++ L A+
Sbjct: 8 DAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTP-TSANTSIPLRKEIMEGLAAA 66
Query: 66 SNFTPLMTLYLTDTTS---------PDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLF 116
P + L L + D K G + G T + DGV
Sbjct: 67 PKLEPNVELLLKGSVGGRAELGEVVIDGAGEEAKAGADLIKVIEDGGKTAKAIDGVLPAL 126
Query: 117 G-----KCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVV 171
H E + + +
Sbjct: 127 APHDPPTVSH--EGLKN------EVELAEETEEAEKLG---------------------L 157
Query: 172 MEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 231
+ HI +A GG+ +CL + I
Sbjct: 158 LVHIHAAEA----------------------SGEVNAILGGVDLLAHCLHLDDEAI---E 192
Query: 232 VVSAVTSGSRKFFLGTDSAPHERGRKE-CACGCAGIYNAPVALSLYAKVFEEMGALDKLE 290
++ SG L +S H GR + GI + A++ ++ G +
Sbjct: 193 LLKEAGSGIAHCPLSNESILHRGGRFSLMSGDAQGIGELGSGGARLARLADKGGVVGLGT 252
Query: 291 AFTSFNGPDFYGLPRNTSKIKLTKIPWKVP-EAFSFSFGDIIPMFAG 336
NG DFY P S I+ ++ P +A + + G
Sbjct: 253 DGAGLNGKDFYLDPDGLSPIEALRMATINPAKALGLD-DRVGSIEVG 298
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 69.7 bits (171), Expect = 3e-13
Identities = 74/319 (23%), Positives = 124/319 (38%), Gaps = 43/319 (13%)
Query: 10 DWHLHLRD------GDLLKAVVPHSVSHYGRAIV--MPNLKPPITTTAAAVAYRESILKA 61
D H+H R+ D + + + G V MPN KPP TTTA A+ + + A
Sbjct: 10 DIHVHFREPGLTYKEDFVSGS--RAAAAGGVTTVMDMPNTKPP-TTTAEALYEKLRLAAA 66
Query: 62 LPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFG---- 117
+ ++ LY T S D ++ K K++ +T + D L
Sbjct: 67 K-SVVDY----GLYFGVTGSED-LEELDKAPPAG-YKIFMGDSTGDLLDDEETLERIFAE 119
Query: 118 ----KCVHV-LEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVM 172
H E+ + +N L I D E + T + R ++ +
Sbjct: 120 GSVLVTFHAEDEDRLRENRKELKG---ESAHPRIRDAEAAAVATARALKLARRHGARLHI 176
Query: 173 EHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAV 232
H++T + +K ++ K G VTP HL L+ L P L+ R+A+
Sbjct: 177 CHVSTPEELKLIKKAKPGV-TVEVTPHHLFLDVEDY--DRLGTLGKVNPPLRSREDRKAL 233
Query: 233 VSAVTSGSRKFFLGTDSAPH-----ERGRKECACGCAGIYNA-PVALSLYAKVFEEMGAL 286
+ A+ G R + +D APH +G G G+ A P+ L+L V + + +L
Sbjct: 234 LQALADG-RIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTL---VNKGILSL 289
Query: 287 DKLEAFTSFNGPDFYGLPR 305
++ TS N +G+
Sbjct: 290 SRVVRLTSHNPARIFGIKN 308
>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 68.1 bits (167), Expect = 1e-12
Identities = 74/300 (24%), Positives = 111/300 (37%), Gaps = 51/300 (17%)
Query: 36 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 95
+ MPN KPPI T A E ++ L T + GV
Sbjct: 89 VDMPNTKPPIDTAEALEDKLERAKGKSVV--DYAFYGGL----TKGNLGKLELTERGVEA 142
Query: 96 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID 155
K + +T D V + LE E +LVH E D I E V +
Sbjct: 143 GFKGFMDDSTGALDDDVLEE------ALEYAAELGALILVHAEDDDLI-----AEGVMNE 191
Query: 156 TILQP--------------LIQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAAT 195
+ P I R +L +V + HI+T ++V+ + + K + T
Sbjct: 192 GLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHISTKESVELIRAAKAEGIRVT 251
Query: 196 --VTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPH- 252
VTP HL+L+ + L P L+ E R+A+ A+ G + +D APH
Sbjct: 252 AEVTPHHLLLDEEDIE--DLGTLAKVNPPLRDEEDREALWEALKDGV-IDVIASDHAPHT 308
Query: 253 --ERGRK--ECACGCAGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNT 307
E+ E G G+ A P+ L+L K +L++L S N +GLP
Sbjct: 309 LEEKRLPFEEAPSGIPGLETALPLLLTLVKK---GRLSLERLVELLSTNPARIFGLPPKG 365
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 51.7 bits (124), Expect = 3e-07
Identities = 71/298 (23%), Positives = 108/298 (36%), Gaps = 51/298 (17%)
Query: 10 DWHLHLRD------GDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALP 63
D H+HLRD D+ + + MPN KPPI T + ++ LK +
Sbjct: 43 DLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMPNTKPPI-DTPETLEWKLQRLKKV- 100
Query: 64 ASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN--SQDGVTDL-FGKCV 120
+ + Y T +L A +L AGA + DG
Sbjct: 101 SLVDVHL----YGGVTQGNQGKELTE------AYELKEAGAVGRMFTDDGSEVQDILSMR 150
Query: 121 HVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPL-------------IQRLPQ 167
LE +P+ +H E DP D+ + L + RL +
Sbjct: 151 RALEYAAIAGVPIALHAE--DP--DLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLE 206
Query: 168 L------KVVMEHITTMDAVKFVESCKEGFVAAT--VTPQHLVLNRNALFQGGLRPHNYC 219
L V + HI+T ++++ + K + T VTP HL+L+ + L +
Sbjct: 207 LAKHAGCPVHICHISTKESLELIVKAKSQGIKITAEVTPHHLLLSEEDV--ARLDGNGKV 264
Query: 220 LPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPH--ERGRKECACGCAGIYNAPVALSL 275
P L+ + R A++ + G TD APH E KE A GI AL L
Sbjct: 265 NPPLREKEDRLALIEGLKDGIIDII-ATDHAPHTLEEKTKEFAAAPPGIPGLETALPL 321
>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth.
Length = 374
Score = 49.9 bits (120), Expect = 8e-07
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 169 KVVMEHITTMDAVKFVESCKEGF--VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE 226
+V +H++T +++ + K V A VTP HL+L+ AL + P L+ E
Sbjct: 187 RVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALE--SYDTNAKVNPPLRSE 244
Query: 227 IHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVF--EE 282
R+A++ A+ G+ + +D APH K+ A GI AL L +
Sbjct: 245 EDREALIEALKDGTID-AIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGG 303
Query: 283 MGALDKLEAFTSFNGPDFYGLPRNT 307
+ L L S N GLP
Sbjct: 304 LLTLPDLIRALSTNPAKILGLPPGR 328
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 47.7 bits (114), Expect = 5e-06
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 174 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVV 233
HI+T + V ++ + + VTP HL L+R L P L+ E R+A+
Sbjct: 234 HISTPEGV---DAARREGITCEVTPHHLFLSRRDW--ERLGTFGKMNPPLRSEKRREALW 288
Query: 234 SAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP---------VALSLYAKVFEEMG 284
+ G+ + +D APH R K+ A I++AP + L L A V +
Sbjct: 289 ERLNDGTID-VVASDHAPHTREEKD-----ADIWDAPSGVPGVETMLPLLLAA-VRKNRL 341
Query: 285 ALDKLEAFTSFNGPDFYGLPR 305
L+++ T+ N +GL
Sbjct: 342 PLERVRDVTAANPARIFGLDG 362
>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines.
Length = 337
Score = 47.0 bits (112), Expect = 7e-06
Identities = 57/267 (21%), Positives = 94/267 (35%), Gaps = 57/267 (21%)
Query: 10 DWHLHLRDGDLL----------KAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESIL 59
D H+HLRD +A V+ I MPN PP A I
Sbjct: 9 DIHVHLRDPGGTTYKEDFESGSRAAAAGGVTT---VIDMPNTGPPPIDL---PAIELKIK 62
Query: 60 KALPAS-SNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLY-PAGATTNSQDGVTDLFG 117
A +S +F+ + DE+K G+ ++K++ L
Sbjct: 63 LAEESSYVDFS--FHAGIGPGDVTDELKKLFDAGIN-SLKVFMNYYFGELFDVDDGTLMR 119
Query: 118 KCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITT 177
E+ + P++VH E L + V + H+++
Sbjct: 120 T----FLEIASRGGPVMVHAE------------------RAAQLAE-EAGANVHIAHVSS 156
Query: 178 MDAVKFVESCKEGFVAAT--VTPQHLVLNRNALFQGG----LRPHNYCLPVLKREIHRQA 231
+A++ ++ K V T V P HL L+ + L G + P P+ +E R+A
Sbjct: 157 GEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWGKVNP-----PLRSKE-DREA 210
Query: 232 VVSAVTSGSRKFFLGTDSAPHERGRKE 258
+ V +G +D APH + KE
Sbjct: 211 LWEGVKNGKIDTI-ASDHAPHSKEEKE 236
>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 45.2 bits (108), Expect = 3e-05
Identities = 75/331 (22%), Positives = 113/331 (34%), Gaps = 95/331 (28%)
Query: 10 DWHLHLRD------GDLLKAVVPHSVSH------YGRAIVMPNLKPPITTTAAAVAYRES 57
D H+HLR+ + + S + + MPN KP I T V E
Sbjct: 57 DLHVHLREPGQEDKETI------ETGSRAAAAGGFTTVVAMPNTKPVIDT--PEVV--EY 106
Query: 58 ILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDG--VTDL 115
+L A++ G+V + P GA T G +T+
Sbjct: 107 VLD--------------------------RAKEAGLV---DVLPVGAITKGLAGEELTEF 137
Query: 116 ----------F---GKCVH---VLEEMVEQ----NMPLLVHGEVTDPIVDIFDREKVFID 155
F G V ++ +E ++ + H E E
Sbjct: 138 GALKEAGVVAFSDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSA 197
Query: 156 TI-LQP--------------LIQRLPQLKVVMEHITTMDAVKFVESCKE-GF-VAATVTP 198
+ L L+ +V + H++T +V+ + K G V A VTP
Sbjct: 198 RLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALGIKVTAEVTP 257
Query: 199 QHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE 258
HL+L L P+ P L+ E R+A++ + G+ + TD APH R KE
Sbjct: 258 HHLLLTDEDLL--TYDPNYKVNPPLRTEEDREALIEGLKDGTIDA-IATDHAPHAREEKE 314
Query: 259 CACGCA--GIYNAPVALSLYAKVFEEMGALD 287
C A GI ALSL + G LD
Sbjct: 315 CEFEAAPFGITGLETALSLLYTTLVKTGLLD 345
>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 42.7 bits (101), Expect = 2e-04
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 174 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ-GGLRPHNYCLPVLKREIHRQAV 232
H++T + + K +V A VTPQHL+LN +A + G L N P L+ +A+
Sbjct: 232 HLSTAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYERIGTLAQMN---PPLRSPEDNEAL 288
Query: 233 VSAVTSGSRKFFLGTDSAPH 252
A+ G F+ TD APH
Sbjct: 289 WQALRDGVID-FIATDHAPH 307
>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional.
Length = 398
Score = 40.5 bits (95), Expect = 8e-04
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 174 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVV 233
HI+T D +K + +V+ VTP HL L R + L P L+ E R+A+
Sbjct: 204 HISTKDGLKLILKSNLPWVSFEVTPHHLFLTRKDYERNPLLKVY---PPLRSEEDRKALW 260
Query: 234 SAVTSGSRKFFLGTDSAPHERGRKECACGCAGI--YNAPVALSLYA 277
S+ + +D APH KE G AGI V L L A
Sbjct: 261 ENF---SKIPIIASDHAPHTLEDKE--AGAAGIPGLETEVPLLLDA 301
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 37.7 bits (87), Expect = 0.006
Identities = 55/322 (17%), Positives = 95/322 (29%), Gaps = 86/322 (26%)
Query: 10 DWHLHLRDGDLLK-----------------------AVVPHSVSHY-GRAIVMPNLKPPI 45
D H+HL L + ++ + M + PP
Sbjct: 3 DTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPT 62
Query: 46 TTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPD----------EIKLARKTGVVF 95
TT AA A E A AS+ ++ L + + ++ + G V
Sbjct: 63 TTKAAIEAVAE----AARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAV- 117
Query: 96 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID 155
+KL T D VLEE + +P+++H + +
Sbjct: 118 GLKLAGPYTATGLSDESLR------RVLEEARKLGLPVVIHAGELPDPTRALED---LVA 168
Query: 156 TILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRP 215
+ +VV+ H++ +D + +E KE V+ V P L
Sbjct: 169 LLRLG-------GRVVIGHVSHLDP-ELLELLKEAGVSLEVCPLSNYLLGR--------- 211
Query: 216 HNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSL 275
+A+ + G + LGTD PH + L L
Sbjct: 212 ---------DGEGAEALRRLLELG-IRVTLGTDGPPH-----------PLGTDLLALLRL 250
Query: 276 YAKVFEEMGALDKLEAFTSFNG 297
KV +L++ + N
Sbjct: 251 LLKVLRLGLSLEEALRLATINP 272
>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
Length = 409
Score = 36.8 bits (85), Expect = 0.013
Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 42/241 (17%)
Query: 38 MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 97
MPN PI A + A A +F+ LY +T + I R G+
Sbjct: 84 MPNNNIPIKDYNAFSDKLGRV--APKAYVDFS----LYSMETGNNALILDERSIGL---- 133
Query: 98 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTI 157
K+Y G TTN+ TD+ G + + E N+P+ H E+++ + K D
Sbjct: 134 KVY-MGGTTNTNG--TDIEGGEIKKINEA---NIPVFFHAELSECLRKHQFESKNLRDHD 187
Query: 158 L-QPL---------IQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 207
L +P+ ++ L ++ H++++D + G VTP HL+LN +
Sbjct: 188 LARPIECEIKAVKYVKNLDLKTKIIAHVSSIDVI--------GRFLREVTPHHLLLNDDM 239
Query: 208 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKF-FLGTDSAPH-ERGRKECACGCAG 265
L + P L+ ++ ++ SG +F L +D APH E ++E +G
Sbjct: 240 ----PLGSYGKVNPPLRDRWTQERLLEEYISG--RFDILSSDHAPHTEEDKQEFEYAKSG 293
Query: 266 I 266
I
Sbjct: 294 I 294
>gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase. These proteins are
amidohydrolases that are related to pfam01979.
Length = 272
Score = 34.5 bits (79), Expect = 0.060
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 83 DEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDP 142
+ + + G V+L P + G + E + E +P+ +H D
Sbjct: 89 ELERRLAELGFR-GVRLNP-----HPGGGPLLDPRLDDPIFEALAELGLPVDLHTGFGDA 142
Query: 143 IVDIFDREKVFIDTILQPLIQRLPQLKVVMEH 174
D+ +L L +R P LK+V++H
Sbjct: 143 GEDLD----AAQPLLLSGLARRFPDLKIVLDH 170
>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
Length = 444
Score = 30.7 bits (70), Expect = 1.3
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 174 HITTMDAVKFVESCKEGFVAAT-VTPQHLVLNRNALFQ--GGLRPHNYCLPVLKREIHRQ 230
H++T + + F+ K+ VA VTP HL L ++ G L N P ++ HR
Sbjct: 234 HVSTAEEIDFLADHKD--VATVEVTPHHLTLAAPECYERLGTLAQMN---PPIRDARHRD 288
Query: 231 AVVSAVTSGSRKFFLGTDSAPHERGRKE 258
+ V G LG+D APH K
Sbjct: 289 GLWRGVRQGVVDV-LGSDHAPHTLEEKA 315
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 29.9 bits (68), Expect = 1.7
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 17/71 (23%)
Query: 74 LYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN----SQDGVTDLFGKCVHVLEEMVEQ 129
++L DT +EIK A +TG++ G TTN ++ G D VL+E+ E
Sbjct: 2 IFL-DTADLEEIKKASETGLL-------DGVTTNPSLIAKSGRIDFEA----VLKEICEI 49
Query: 130 NMPLLVHGEVT 140
+ V +V
Sbjct: 50 -IDGPVSAQVV 59
>gnl|CDD|182501 PRK10503, PRK10503, multidrug efflux system subunit MdtB;
Provisional.
Length = 1040
Score = 29.7 bits (67), Expect = 2.7
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 271 VALSLYAKVFEEMGAL-----DKLEAFT-SFNGPDFYGLPRNTSKIKLTKIPWKVPEAFS 324
V LS A + + G L D+ + T SFN PD Y L I T+ +P
Sbjct: 790 VPLSSIATIEQRFGPLSINHLDQFPSTTISFNVPDGYSLGDAVQAIMDTEKTLNLPA--- 846
Query: 325 FSFGDIIPMFAGNTLEWQPSL 345
DI F G+TL +Q +L
Sbjct: 847 ----DITTQFQGSTLAFQSAL 863
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 28.8 bits (65), Expect = 4.5
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 192 VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 239
V A V+ HL LN N + G R P L+ E R A+V AV SG
Sbjct: 258 VTAGVSINHLSLNENDI--GEYRTFFKLSPPLRTEDDRVAMVEAVASG 303
>gnl|CDD|200272 TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein
UrtB. Members of this protein family are ABC
transporter permease proteins associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 291
Score = 28.4 bits (64), Expect = 5.7
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 261 CGCAGIYNAPVALSLYAKVFEEMGALDKLEAF 292
G AG+ A VAL+L V +G L +++F
Sbjct: 200 SGIAGV--AGVALTLIGNVGPTLGQLYIVDSF 229
>gnl|CDD|219557 pfam07758, DUF1614, Protein of unknown function (DUF1614). This is
a family of sequences coming from hypothetical proteins
found in both bacterial and archaeal species.
Length = 178
Score = 27.6 bits (62), Expect = 7.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 20 LLKAVVPHSVSHY--GRAIVMPNLKPPITTTAAAVAY 54
L+ A+V + +S G IV P PP+ AA +AY
Sbjct: 82 LIVALVVYLLSRPVPGVGIVDPAYIPPL--VAALIAY 116
>gnl|CDD|220843 pfam10673, DUF2487, Protein of unknown function (DUF2487). This is
a bacterial family of uncharacterized proteins.
Length = 143
Score = 26.9 bits (60), Expect = 9.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 144 VDIFDREKVFIDTILQPLI 162
VD + +EK +IDT + PL+
Sbjct: 1 VDTYLQEKDYIDTAVIPLL 19
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,913,760
Number of extensions: 1730250
Number of successful extensions: 1486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1466
Number of HSP's successfully gapped: 43
Length of query: 346
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 248
Effective length of database: 6,590,910
Effective search space: 1634545680
Effective search space used: 1634545680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)