RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019093
(346 letters)
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD;
1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A*
1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A*
3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Length = 347
Score = 418 bits (1075), Expect = e-147
Identities = 194/341 (56%), Positives = 236/341 (69%), Gaps = 2/341 (0%)
Query: 2 ELTLTQPDDWHLHLRDGDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKA 61
L + +PDDWHLHLRDGD+LK VVP++ YGRAIVMPNL PP+TT AAVAYR+ IL A
Sbjct: 6 VLKIRRPDDWHLHLRDGDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDA 65
Query: 62 LPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVH 121
+PA +FTPLMT YLTD+ P+E++ GV A KLYPA AT NS GVT +
Sbjct: 66 VPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTS-VDAIMP 124
Query: 122 VLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAV 181
VLE M + MPLLVHGEVT +DIFDRE FI+++++PL QRL LKVV EHITT DA
Sbjct: 125 VLERMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAA 184
Query: 182 KFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSR 241
+V E AAT+TPQHL+ NRN + GG+RPH YCLP+LKR IH+QA+ V SG
Sbjct: 185 DYVRDGNERL-AATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFN 243
Query: 242 KFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFY 301
+ FLGTDSAPH R RKE +CGCAG +NAP AL YA VFEEM AL EAF S NGP FY
Sbjct: 244 RVFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFY 303
Query: 302 GLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQ 342
GLP N + I+L + +V E+ + + ++P AG T+ W
Sbjct: 304 GLPVNDTFIELVREEQQVAESIALTDDTLVPFLAGETVRWS 344
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu
genomics, center for structural genomics of infectious
DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Length = 359
Score = 387 bits (995), Expect = e-135
Identities = 126/343 (36%), Positives = 184/343 (53%), Gaps = 12/343 (3%)
Query: 2 ELTLTQPDDWHLHLRDGDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKA 61
+ L P D HLHLRD +L+ + P S + A++MPNL PP+ AY+ ILKA
Sbjct: 24 AMKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLCNLEDLKAYKMRILKA 83
Query: 62 LPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLF-GKCV 120
NFTPLMTL+ + E L +F +KLYPAG TTNS GV+
Sbjct: 84 CK-DENFTPLMTLFFKNYD---EKFLYSAKDEIFGIKLYPAGITTNSNGGVSSFDIEYLK 139
Query: 121 HVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA 180
LE M + N+PLLVHGE D + DRE F I + L + P+LK+VMEHITT
Sbjct: 140 PTLEAMSDLNIPLLVHGETNDFV---MDRESNFAK-IYEKLAKHFPRLKIVMEHITTKTL 195
Query: 181 VKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 240
+ ++ + + AT+T HL++ + + G + PH +C P+ KR ++A+ SG
Sbjct: 196 CELLKDYE--NLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDKEALCELAFSGY 253
Query: 241 RKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDF 300
K G+DSAPH + KEC AG+++APV L + A++F++ + + L+ F S N
Sbjct: 254 EKVMFGSDSAPHPKDTKECCGCAAGVFSAPVILPVLAELFKQNSSEENLQKFLSDNTCKI 313
Query: 301 YGLPRNTSKI-KLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQ 342
Y L KI L + W+VP + + ++P AG L++Q
Sbjct: 314 YDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQ 356
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 50.7 bits (122), Expect = 3e-07
Identities = 48/296 (16%), Positives = 103/296 (34%), Gaps = 38/296 (12%)
Query: 38 MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 97
MP + P T A++ + K + + L L + D + + GVV
Sbjct: 111 MPLNQLPATVDRASIELKFDAAKG-KLTIDAAQLGGL--VSY-NIDRLHELDEVGVV-GF 165
Query: 98 KLY--PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDR--EKVF 153
K + G D + +++ E P+LVH E ++ + +
Sbjct: 166 KCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGR 225
Query: 154 IDTILQPL----------IQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAAT-- 195
+ I+R+ L ++ + H+++ + V+ V ++ T
Sbjct: 226 VTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDITCE 285
Query: 196 VTPQHLVLNRNALFQGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHER 254
P + VL+ + + G C P ++ +++ + + +G L +D +P
Sbjct: 286 SCPHYFVLDTDQFEEIG---TLAKCSPPIRDLENQKGMWEKLFNGEID-CLVSDHSPCPP 341
Query: 255 GRKE-----CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR 305
K G AG+ + + + V + +L + N D +GL +
Sbjct: 342 EMKAGNIMKAWGGIAGLQSC-MDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQ 396
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis}
Length = 452
Score = 49.1 bits (118), Expect = 1e-06
Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 46/271 (16%)
Query: 38 MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 97
MPN PP TT + + I A +N+ T+ + ++ + +V +
Sbjct: 98 MPNTNPP-TTMWERLLEKRQIGADT-AWANYGFFFGG--TNDNIDEIKRVDKH--LVPGL 151
Query: 98 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTI 157
KL+ S G L + + E ++ + H E + I + K
Sbjct: 152 KLF-----LGSSTGNM-LVDNKETLEKIFGECDLLIATHCEKEEIIRANKEHYKAKYGND 205
Query: 158 LQPL--------------IQRLPQL------KVVMEHITTMDAVKFVESCK---EGFVAA 194
L +L ++ + H++T + + + + +
Sbjct: 206 LDIHFHPLIRSEEACYRSSAEAVELAERMNARLHILHLSTEKELSLFRNDIPTAQKRITS 265
Query: 195 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKF-FLGTDSAPH- 252
V HL + + G P +K+E R+A+ +AV +G + + TD APH
Sbjct: 266 EVCVHHLWFSDTDYGRLG--NRIKWNPAIKKESDREALRAAVRNG--RIDIIATDHAPHL 321
Query: 253 ----ERGRKECACGCAGIYNA-PVALSLYAK 278
E + A G + ++ L L +
Sbjct: 322 LREKEGSCLQAASGGPLVQHSLLALLELCNQ 352
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 46.4 bits (111), Expect = 7e-06
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 174 HITTMDAVKFVESCKE-GF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 231
H++T +++ +E KE G + V P HL+ + + P L+++ R A
Sbjct: 277 HVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREV--LNSGANARVNPPLRKKEDRLA 334
Query: 232 VVSAVTSGSRKFFLGTDSAPHERGRKEC----ACGCAGIYNA-PVALSLYAK-VFEEMGA 285
++ V G TD APH+ KE G G+ A P AL LY K +
Sbjct: 335 LIEGVKRGIID-CFATDHAPHQTFEKELVEFAMPGIIGLQTALPSALELYRKGIISLKKL 393
Query: 286 LDKLEAFTSFNGPDFYGLPRNT 307
++ + N G+ T
Sbjct: 394 IEMF----TINPARIIGVDLGT 411
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 45.2 bits (108), Expect = 2e-05
Identities = 37/259 (14%), Positives = 81/259 (31%), Gaps = 40/259 (15%)
Query: 38 MPNLKPPITTTAAAVAYRESILKALP-ASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 96
M ++ KA + ++T M + D + +++ G+ +
Sbjct: 92 MCCPSRNDDALEGYQLWKS---KAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGIS-S 147
Query: 97 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDR--EKVFI 154
K++ + + GV D G+ L E + + H E + + + + +
Sbjct: 148 FKIF---LSYKNFFGVDD--GEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKT 202
Query: 155 DTILQPL----------IQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAAT--V 196
R + H++ A+ + K V
Sbjct: 203 GPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIES 262
Query: 197 TPQHLVLNRNALFQGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERG 255
H +L++ +GG+ Y P L+ + +++ + A+ G +GTD P +
Sbjct: 263 VIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFID-TVGTDHCPFDTE 321
Query: 256 RKE--------CACGCAGI 266
+K G I
Sbjct: 322 QKLLGKEAFTAIPNGIPAI 340
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 61/402 (15%), Positives = 111/402 (27%), Gaps = 143/402 (35%)
Query: 19 DLLKAVVPHSVSHY--GRAI--VMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTL 74
+L + + Y G I + L TT + ++K +
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK---TKELIKNYITARIMAK---- 134
Query: 75 YLTDTTSPDEIKLAR--KTGVVFAVKLYPA--GATTNSQDGVTDLFGKCVHVLEEMVEQN 130
L R G +L G Q G TD + EE+ +
Sbjct: 135 --RPFDKKSNSALFRAVGEG---NAQLVAIFGG-----Q-GNTDDY------FEELRD-- 175
Query: 131 MPLLVHGEVTDPIVDIFDREKVFIDTI-------LQPLIQRLPQLKVVMEHITTMDAVKF 183
++ V + + L LI+ + V ++ +++
Sbjct: 176 ---------------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--GLNILEW 218
Query: 184 VESC----KEGFVA-ATVT-P-----Q--HLVLNRNALFQGGLRPHNYCLPVLKREI--- 227
+E+ + ++ ++ P Q H V+ L G P L+ +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL---GFTPGE-----LRSYLKGA 270
Query: 228 --HRQAVVSAV---TSGSRK-------------FFLGT-----------------DSAPH 252
H Q +V+AV + S + FF+G DS +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 253 ERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPD-F---------YG 302
G + + + Y K + NG YG
Sbjct: 331 NEGVPSPMLSISNL--TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 303 LPRNTSKIKL------TKIPW---KVPEAFSFSFGDIIPMFA 335
L K K ++IP+ K+ FS F +P+ +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKL--KFSNRF---LPVAS 425
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding,
pyrimidine biosynthesis, structural genomics, NPPSFA;
2.42A {Thermus thermophilus}
Length = 426
Score = 44.8 bits (107), Expect = 3e-05
Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 9/140 (6%)
Query: 174 HITTMDAVKFVESCK-EGF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 231
H++T ++ V K G V A TP HL L AL P P L+ E R+A
Sbjct: 233 HLSTKRGLELVREAKRAGLPVTAEATPHHLTLTEEAL--RTFDPLFKVAPPLRGEEDREA 290
Query: 232 VVSAVTSGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVFEEMGALD-- 287
++ + G+ + TD APH KE A GI + VA L
Sbjct: 291 LLEGLLDGTLD-AIATDHAPHTLAEKEKDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQ 349
Query: 288 KLEAFTSFNGPDFYGLPRNT 307
+L + GLP
Sbjct: 350 RLVELFTDGPRRVLGLPPLH 369
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 44.4 bits (106), Expect = 3e-05
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 174 HITTMDAVKFVESCKE-GF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 231
H++T +V+ + K G V A VTP HLVL + + P+ P L+ + +A
Sbjct: 231 HVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDI--PSADPNFKMNPPLRGKEDHEA 288
Query: 232 VVSAVTSGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVFEEMGALD-- 287
++ + G+ + TD APH K A GI A L + G +
Sbjct: 289 LIEGLLDGTID-MIATDHAPHTAEEKAQGIERAPFGITGFETAFPLLYTNLVKKGIITLE 347
Query: 288 KLEAFTSFNGPDFYGLPRNT 307
+L F + D +GL
Sbjct: 348 QLIQFLTEKPADTFGLEAGR 367
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 43.6 bits (104), Expect = 5e-05
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Query: 174 HITTMDAVKFVESCKE-GF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 231
H++T ++V+ + K G V A VTP HL+L + + G P L+ R+A
Sbjct: 230 HVSTKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDI--PGNNAIYKMNPPLRSTEDREA 287
Query: 232 VVSAVTSGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVFEEMGALD-- 287
++ + G+ + TD APH R K A GI + A L F + G
Sbjct: 288 LLEGLLDGTID-CIATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQ 346
Query: 288 KLEAFTSFNGPDFYGLPRNT 307
+L + + + + L T
Sbjct: 347 QLVDYLTIKPCETFNLEYGT 366
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 5e-05
Identities = 46/295 (15%), Positives = 84/295 (28%), Gaps = 72/295 (24%)
Query: 73 TLYLT-DTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHV----LEEMV 127
L T D + A T + + + T D V L K + L V
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREV 322
Query: 128 EQNMPLLVH--GEVTDPIVDIFDR-EKVFIDTI----------LQPLIQR--LPQLKVVM 172
P + E + +D + V D + L+P R +L V
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 173 E--HITTMDAVKF-VESCKEGFVAATVTPQHLV--LNRNALFQGGLRPHNYCLPVL---- 223
HI T+ + K +V L++ +L + + +P +
Sbjct: 383 PSAHIPTILLSLIWFDVIKS-------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 224 ------KREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYA 277
+ +HR +V + + F P+ Y Y+
Sbjct: 436 KVKLENEYALHRS-IVDHY-NIPKTFDSDDLIPPYLDQ-----------Y-------FYS 475
Query: 278 KVFEEMGALDKLEAFTSFNGP--DFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 330
+ + ++ E T F DF L + KI+ W + + +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNTLQQL 527
Score = 43.3 bits (101), Expect = 1e-04
Identities = 63/408 (15%), Positives = 110/408 (26%), Gaps = 163/408 (39%)
Query: 19 DLLKAVV-----------PHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSN 67
D+ K+++ +VS R K + E +L+ N
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRI-----N 90
Query: 68 FTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLF---GKCVHVLE 124
+ LM+ T+ P + + + +LY N + L
Sbjct: 91 YKFLMSPIKTEQRQPS---MMTRMYIEQRDRLY------NDNQVFAKYNVSRLQPYLKLR 141
Query: 125 EMVEQNMP---LLVHG-----------EV--TDPIVDIFDREKVF---------IDTILQ 159
+ + + P +L+ G +V + + D K+F +T+L+
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLE 200
Query: 160 PLIQRL-----PQLKVVMEHITTMDAVKF-VESCKEGFVAATVTPQHLVLNRNALFQGGL 213
L Q+L P +H +K + S + L R L +
Sbjct: 201 ML-QKLLYQIDPNWTSRSDH---SSNIKLRIHSIQAE------------LRR--LLK--S 240
Query: 214 RPHNYCLPVL-----KREIH------------RQAVVSAVTSGSRKF------------- 243
+P+ CL VL + + R V+ S +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 244 ---------FLGTDSA--PHERGRKECACGCAGIYNAPVALSLYAKVFEEMGA------- 285
+L P E P LS+ A+ + A
Sbjct: 301 DEVKSLLLKYLDCRPQDLPRE------VLTT-----NPRRLSIIAESIRDGLATWDNWKH 349
Query: 286 --LDKLEAF--TSFNG--PD-----FYGL---PRNTSKIKLTKIPWKV 319
DKL +S N P F L P + IP +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTIL 391
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 43.3 bits (103), Expect = 7e-05
Identities = 46/260 (17%), Positives = 87/260 (33%), Gaps = 45/260 (17%)
Query: 38 MPNLKPPITTTAAAVAYRESILKALP-ASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 96
MP PP TT A + ++ +A +F + EI+ G V
Sbjct: 93 MPITFPPTTTLDAFLEKKK---QAGQRLKVDFALYGGG--VPG-NLPEIRKMHDAGAV-G 145
Query: 97 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT 156
K A + D V+D G+ + +E+ ++VH E I + ++++
Sbjct: 146 FKSMMAASVPGMFDAVSD--GELFEIFQEIAACGSVIVVHAENETIIQAL--QKQIKAAG 201
Query: 157 ILQPL--------------IQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAATV 196
IQR L ++++ H++ D V+ + +
Sbjct: 202 GKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHC 261
Query: 197 --TPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHER 254
PQ+L + + + G P+ P ++ + + +G LG+D H
Sbjct: 262 ESGPQYLNITTDDAERIG--PYMKVAPPVRSAEMNIRLWEQLENGLID-TLGSDHGGHPV 318
Query: 255 GRKE--------CACGCAGI 266
KE G G+
Sbjct: 319 EDKEPGWKDVWKAGNGALGL 338
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 42.6 bits (101), Expect = 1e-04
Identities = 39/257 (15%), Positives = 85/257 (33%), Gaps = 40/257 (15%)
Query: 38 MP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 96
MP N PP T R+ + + ++ L D ++ GV
Sbjct: 97 MPLNSNPPTITREELDKKRQLANEK--SLVDYRFWGGL--VPGN-IDHLQDLHDGGV-IG 150
Query: 97 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDR--EKVFI 154
K + + T+ D + ++++ L VH E + + + E+ +
Sbjct: 151 FKAFMSECGTDDFQFSHD--ETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIEEQRL 208
Query: 155 DTILQPL----------IQRLPQL------KVVMEHITTMDAVKFVESCK-EGF-VAATV 196
++R+ + + + H+++ +K ++ K EG V+
Sbjct: 209 TVKDYSEARPIVSELEAVERILRFAQLTCCPIHICHVSSRKVLKRIKQAKGEGVNVSVET 268
Query: 197 TPQHLVLNRNALFQGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERG 255
P +L+ + + + G C P L+ + + + +G + +D +P
Sbjct: 269 CPHYLLFSLDEFAEIGYL---AKCAPPLRERQEVEDLWDGLMAGEID-LISSDHSPSLPQ 324
Query: 256 RKE------CACGCAGI 266
K G AG
Sbjct: 325 MKTGKTIFEVWGGIAGC 341
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 38.8 bits (91), Expect = 0.002
Identities = 37/261 (14%), Positives = 77/261 (29%), Gaps = 43/261 (16%)
Query: 38 MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 97
P + A + K+ A+ +++ M + +E++ K +
Sbjct: 90 FALPSPGQSLLEALTMWDN---KSTRANCDYSFHMAITWWGEQVFNEMETIVKDKGINTF 146
Query: 98 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTI 157
K + A + V D + + LVH E + V + K+ +
Sbjct: 147 KHF--MAYKGA-LMVDD--DEMFSSFQRCAALGALPLVHAE--NGDVVAQLQAKLLAEGN 199
Query: 158 LQPL--------------IQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAATV- 196
P R + V + H + A + + + +
Sbjct: 200 SGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTSCEQAHEAIRRARAKGMRVFGE 259
Query: 197 -TPQHLVLNRNALF-QGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHE 253
QHL L+ F + P + ++H+ ++ + + SGS + TD
Sbjct: 260 PLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVV-ATDHCAFT 318
Query: 254 RGRKE--------CACGCAGI 266
+K G G+
Sbjct: 319 TEQKRFGVGDFTRIPNGTGGL 339
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 37.5 bits (88), Expect = 0.004
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 174 HITTMDAVKFVESCKEGFVAATV--TPQHLVLNRNALFQGGLRPHNY-CLPVLKREIHRQ 230
H++ DAV+ + +E PQ+LVL+ AL + Y P L+ + ++
Sbjct: 239 HVSCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQD 298
Query: 231 AVVSAVTSGSRKFFLGTDSAPH------ERGRK---ECACGCAGI 266
+ SA+ +G + +G+D P E GR+ + G I
Sbjct: 299 VLWSALKNGILQ-TVGSDHCPFNFSGQKELGRRDFTKIPNGGPII 342
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 36.7 bits (86), Expect = 0.009
Identities = 36/262 (13%), Positives = 85/262 (32%), Gaps = 45/262 (17%)
Query: 38 MPNLKPPITTTAAAVAYRESILKALP-ASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 96
+ A + A ++ ++ + + + +E+++ G+ +
Sbjct: 91 FCQQDRGHSLAEAVAKWDG---MAGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGIT-S 146
Query: 97 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT 156
K++ + + D + L++ V+ ++VH E D R+K +
Sbjct: 147 FKVF---MAYRGMNMIDD--VTLLKTLDKAVKTGSLVMVHAE-NGDAADYL-RDKFVAEG 199
Query: 157 ILQPL--------------IQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAATV 196
P+ R L + + H+T ++++ V K V A
Sbjct: 200 KTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALA 259
Query: 197 --TPQHLVLNRNALFQGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPH- 252
+L L + L + Y P + + + +A+ +G + + +D
Sbjct: 260 ETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNALRNGVFE-TVSSDHCSWL 318
Query: 253 -----ERGRK---ECACGCAGI 266
+RGR G G+
Sbjct: 319 FKGHKDRGRNDFRAIPNGAPGV 340
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 34.6 bits (80), Expect = 0.043
Identities = 34/266 (12%), Positives = 83/266 (31%), Gaps = 47/266 (17%)
Query: 36 IVMPNLKPPITTTAAAVAYRESILKALP-ASSNFTPLMTLYLTDTTSPDEIKLARKTGVV 94
I + A +++ A + +++ + + E+++ K V
Sbjct: 98 IDFVIPTRGQSLLEAYDQWKK---WADEKVNCDYSLHVAITWWSEQVSREMEILVKERGV 154
Query: 95 FAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFI 154
+ K + + VTD + H+ + E VH E + + +F+ +K +
Sbjct: 155 NSFKCF---MAYKNSFMVTD--QEMYHIFKRCKELGAIAQVHAE--NGDM-VFEGQKKML 206
Query: 155 DT-ILQPL--------------IQRLPQL------KVVMEHITTMDAVKFVESCKEGFVA 193
+ I P R + V + H+ ++ A + ++ V
Sbjct: 207 EMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVR 266
Query: 194 ATV--TPQHLVLNRNALFQGGLRPHNYCL---PVLKREIHRQAVVSAVTSGSRKFFLGTD 248
L ++ + ++ R + P+ + ++ + G +GTD
Sbjct: 267 VYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLD-CVGTD 325
Query: 249 SAPHERGRKE--------CACGCAGI 266
+ +K G G+
Sbjct: 326 NCTFCADQKAMGKDDFTKIPNGVNGV 351
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein
structure initiative, TI protein; HET: GOL; 1.76A
{Bordetella bronchiseptica} PDB: 3k4w_A
Length = 291
Score = 31.3 bits (71), Expect = 0.42
Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 68 FTPLMTLYLTDTT-SPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVH-VLEE 125
F P+ ++ + +++ G+ V L P + + ++ +
Sbjct: 93 FHPVGSIEAATRKEAMAQMQEILDLGIR-IVNLEPGV-----WATPMHVDDRRLYPLYAF 146
Query: 126 MVEQNMPLLVH-GEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEH 174
+ +P+++ G P + + E + ++ P L VV H
Sbjct: 147 CEDNGIPVIMMTGGNAGPDITYTNPEH------IDRVLGDFPDLTVVSSH 190
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.61
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 28/56 (50%)
Query: 224 KREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKV 279
K+ + + S K + DSAP AL++ A +
Sbjct: 19 KQALKK-------LQASLKLY-ADDSAP--------------------ALAIKATM 46
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain
swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Length = 220
Score = 29.9 bits (68), Expect = 0.93
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 72 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 107
M LYL DT+ +K + + AG TTN
Sbjct: 1 MELYL-DTSDVVAVKALSRIFPL-------AGVTTN 28
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 30.3 bits (68), Expect = 1.0
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 13/47 (27%)
Query: 142 PIVDIFDREKV---------FIDTILQPLIQRL----PQLKVVMEHI 175
+ + DR+K F + + P L P + +++
Sbjct: 295 QPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQILPPTEPLLKAC 341
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural
genomics, PSI, protein S initiative; 1.80A
{Rhodopseudomonas palustris} SCOP: c.1.9.15
Length = 350
Score = 29.9 bits (67), Expect = 1.1
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 16/121 (13%)
Query: 67 NFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVH----- 121
NF L + P + N +
Sbjct: 106 NFIGAAMLPQSPGVDPKT---CIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWY 162
Query: 122 -VLEEMVEQNMPLLVH-GEVTDPIVD------IFDREKVFIDTILQPLIQRLPQLKVVME 173
+ E+MVE +P ++H + + F+ + L + P+LK V+
Sbjct: 163 PIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTTAFMQCVAGDLFKDFPELKFVIP 222
Query: 174 H 174
H
Sbjct: 223 H 223
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A
{Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A*
3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A
2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A*
2ovv_A* 2ovy_A* ...
Length = 331
Score = 29.8 bits (67), Expect = 1.2
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 13/47 (27%)
Query: 142 PIVDIFDREKV---------FIDTILQPLIQRL----PQLKVVMEHI 175
+ + DR+K F + + P L P + +++
Sbjct: 264 QPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPPTEPLLKAC 310
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A
{Bacillus subtilis}
Length = 212
Score = 29.5 bits (67), Expect = 1.2
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 28/78 (35%)
Query: 72 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN----SQDGVTD----------LFG 117
M ++ DT + DEI+ A + G++ AG TTN +++ +
Sbjct: 1 MLFFV-DTANIDEIREANELGIL-------AGVTTNPSLVAKEANVSFHDRLREITDVVK 52
Query: 118 KCVHV------LEEMVEQ 129
V EEM+E+
Sbjct: 53 GSVSAEVISLKAEEMIEE 70
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA
polymer binding protein, RNA binding protein; 2.10A
{Saccharomyces cerevisiae}
Length = 157
Score = 29.0 bits (64), Expect = 1.3
Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 33/147 (22%)
Query: 38 MPNLKPPITTT---------AAAVAYRESILKALPASSNFTP----LMTLYLTDTTSPDE 84
+LK I+ + + I+ + S P L +LY+ D+
Sbjct: 13 FKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAY 72
Query: 85 IKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDP-- 142
+ R +++ G ++ L E++++ + + D
Sbjct: 73 LDETRSNSNSS-----------SNKPGT---CAHAINTLGEVIQELLSDAIAKSNQDHKE 118
Query: 143 ----IVDIFDREKVFIDTILQPLIQRL 165
++DI+DR +F + L + +
Sbjct: 119 KIRMLLDIWDRSGLFQKSYLNAIRSKC 145
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A*
1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A*
1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A*
3sl6_A* 3sl8_A* 1oyn_A* ...
Length = 349
Score = 29.7 bits (67), Expect = 1.4
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 13/47 (27%)
Query: 142 PIVDIFDREKV--------FIDTILQPLIQRL-----PQLKVVMEHI 175
I + D+ FID I+ PL + P + +++ +
Sbjct: 289 EISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTL 335
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding,
all-alpha-helical, alternative splicing, hydrolase,
membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens}
PDB: 3itm_A* 1z1l_A
Length = 345
Score = 29.4 bits (66), Expect = 1.6
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
Query: 142 PIVDIFDREKV--------FIDTILQPLIQRL----PQLKVVMEHI 175
+++ DREK F++ I P+ + L P+ + E +
Sbjct: 269 RPMEMMDREKAYIPELQISFMEHIAMPIYKLLQDLFPKAAELYERV 314
>1wx0_A Transaldolase; structural genomics, riken structural
genomics/proteomics initiative, RSGI, transferas; 2.27A
{Thermus thermophilus HB8} SCOP: c.1.10.1
Length = 223
Score = 29.2 bits (66), Expect = 1.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 72 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 107
M LYL DT S +EI+ GV+ +G TTN
Sbjct: 1 MELYL-DTASLEEIREIAAWGVL-------SGVTTN 28
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase;
HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB:
1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A*
3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A*
2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Length = 347
Score = 29.3 bits (66), Expect = 1.9
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 13/47 (27%)
Query: 142 PIVDIFDREKV---------FIDTILQPLIQRL----PQLKVVMEHI 175
D+ +REK FID I L + L +++
Sbjct: 289 EPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGC 335
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor
selectivity, CAMP phosphodiesterase, hydrolase; HET:
IBM; 1.50A {Leishmania major}
Length = 359
Score = 29.1 bits (65), Expect = 2.0
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 14/48 (29%)
Query: 142 PIVDIFDREKV---------FIDTILQPLIQRL-----PQLKVVMEHI 175
++ +FDR K FID + + + ++ ++ +
Sbjct: 289 EVLPMFDRSKNNELARGQIGFIDFVAGKFFRDIVGNLFHGMQWCVDTV 336
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A*
1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A*
1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Length = 377
Score = 29.1 bits (65), Expect = 2.3
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 13/47 (27%)
Query: 142 PIVDIFDREKV--------FIDTILQPLIQRL-----PQLKVVMEHI 175
I + D+ FID I+ PL + P + +++ +
Sbjct: 276 EISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTL 322
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational
selection, domain swapping transferase; HET: I22; 1.65A
{Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A*
3s1w_A*
Length = 223
Score = 28.7 bits (65), Expect = 2.3
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 72 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 107
M ++L DT + DEI+ G+V G TTN
Sbjct: 1 MKIFL-DTANIDEIRTGVNWGIV-------DGVTTN 28
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 29.0 bits (65), Expect = 2.8
Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 31/115 (26%)
Query: 174 HITTMDAVKFVESCKEGFVAAT--VTPQHLVLNRNALFQGGLRPHNY------------- 218
H+++ A + ++ + + PQ+ +L+
Sbjct: 254 HVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISES 313
Query: 219 ---------------CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE 258
C P ++ E ++++ + +G+ G+D + K
Sbjct: 314 PFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIV-GSDHCSYNYYEKT 367
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics,
JOI for structural genomics, JCSG; HET: GOL; 2.40A
{Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 28.3 bits (64), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 72 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 107
M ++L DT + +EIK + G+V G TTN
Sbjct: 13 MKIFL-DTANLEEIKKGVEWGIV-------DGVTTN 40
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 28.6 bits (63), Expect = 3.8
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 13/47 (27%)
Query: 142 PIVDIFDREKV---------FIDTILQPLIQRL----PQLKVVMEHI 175
D+ +REK FID I L + L +++
Sbjct: 803 EPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGC 849
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, UCR2, alternative splicing, cytoplasm,
cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
sapiens} PDB: 3g45_A*
Length = 421
Score = 28.3 bits (63), Expect = 3.9
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 13/47 (27%)
Query: 142 PIVDIFDREKV--------FIDTILQPLIQRL-----PQLKVVMEHI 175
I + D+ FID I+ PL + P + +++ +
Sbjct: 355 EISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTL 401
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 27.8 bits (62), Expect = 5.9
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 32/100 (32%)
Query: 22 KAVVPHSV---SHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLM-----T 73
A++P+ SH+G V L I T A V T LM
Sbjct: 181 NAIIPNPPKLPSHHGPD-VKTVLDINIDTMAVIVP---------------TTLMHQHNVM 224
Query: 74 LYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVT 113
+ + +T + D+I + P +++DG+T
Sbjct: 225 VEVEETPTVDDIID--------VFEDTPRVILISAEDGLT 256
>3go5_A Multidomain protein with S1 RNA-binding domains; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.40A {Streptococcus pneumoniae}
Length = 285
Score = 27.2 bits (60), Expect = 7.1
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 5 LTQPDDWHLHLRDGDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPA 64
P + + R G +L A V + LKP A + IL L +
Sbjct: 180 FIHPSERYAEPRLGQVLDARVIGFREVDRTLNLS--LKPRSFEMLENDA--QMILTYLES 235
Query: 65 SSNFTPLMTLYLTDTTSPDEIK 86
+ F L D +SPD+IK
Sbjct: 236 NGGFMTL-----NDKSSPDDIK 252
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo
sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I
3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A
1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B*
2ica_A* 2o7n_A* 3m6f_A* ...
Length = 179
Score = 26.9 bits (60), Expect = 7.8
Identities = 14/124 (11%), Positives = 37/124 (29%), Gaps = 27/124 (21%)
Query: 46 TTTAAAVAY-RESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGV-VFAVKLYPAG 103
T T A+ Y + + + + + +TD + D + + + +
Sbjct: 79 TNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYII------ 132
Query: 104 ATTNSQDGVTDLFGKCVHV--LEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPL 161
G+ F L + + V +D F++ + + L
Sbjct: 133 -------GIGKHFQTKESQETLHKFASKPASEFVKI------LDTFEK----LKDLCTEL 175
Query: 162 IQRL 165
+++
Sbjct: 176 QKKI 179
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 27.3 bits (60), Expect = 8.2
Identities = 9/35 (25%), Positives = 10/35 (28%), Gaps = 8/35 (22%)
Query: 142 PIVDIFDREKV--------FIDTILQPLIQRLPQL 168
PI DR FI I+ PL
Sbjct: 319 PISPFMDRSSPQLAKLQESFITHIVGPLCNSYDAA 353
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,404,477
Number of extensions: 330710
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 52
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)