RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019093
(346 letters)
>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
562]}
Length = 343
Score = 266 bits (681), Expect = 3e-88
Identities = 195/341 (57%), Positives = 238/341 (69%), Gaps = 2/341 (0%)
Query: 2 ELTLTQPDDWHLHLRDGDLLKAVVPHSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKA 61
L + +PDDWHLHLRDGD+LK VVP++ YGRAIVMPNL PP+TT AAVAYR+ IL A
Sbjct: 3 VLKIRRPDDWHLHLRDGDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDA 62
Query: 62 LPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVH 121
+PA +FTPLMT YLTD+ P+E++ GV A KLYPA ATTNS GVT +
Sbjct: 63 VPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTS-VDAIMP 121
Query: 122 VLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAV 181
VLE M + MPLLVHGEVT +DIFDRE FI+++++PL QRL LKVV EHITT DA
Sbjct: 122 VLERMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAA 181
Query: 182 KFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSR 241
+V E +AAT+TPQHL+ NRN + GG+RPH YCLP+LKR IH+QA+ V SG
Sbjct: 182 DYVRDGNE-RLAATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFN 240
Query: 242 KFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFY 301
+ FLGTDSAPH R RKE +CGCAG +NAP AL YA VFEEM AL EAF S NGP FY
Sbjct: 241 RVFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFY 300
Query: 302 GLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQ 342
GLP N + I+L + +V E+ + + ++P AG T+ W
Sbjct: 301 GLPVNDTFIELVREEQQVAESIALTDDTLVPFLAGETVRWS 341
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex
aeolicus [TaxId: 63363]}
Length = 310
Score = 93.9 bits (232), Expect = 2e-22
Identities = 68/314 (21%), Positives = 103/314 (32%), Gaps = 26/314 (8%)
Query: 10 DWHLHLRDGDLLKAVVPHSVSH------YGRAIVMPNLKPPITTTAAAVAYRESILKALP 63
D H+HLRD S S + + MPN PPI T IL+
Sbjct: 4 DIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVV----NYILQKSK 59
Query: 64 ASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGAT-TNSQDGVTDLFGKCVHV 122
+ L T +T EI V G+ +S L
Sbjct: 60 SVGLCRVLPTGTITKGRKGKEIADFYSLKEAGCVAFTDDGSPVMDSSVMRKALELASQLG 119
Query: 123 LEEMVEQNMPLLVHGEVTDPIVDIF------DREKVFIDTILQPLIQRLPQLKVVMEHIT 176
+ M L +G + + V E I ++ + V ++H++
Sbjct: 120 VPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHVHIQHVS 179
Query: 177 TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAV 236
T +++ +E KE V T L + P L+++ R A++ V
Sbjct: 180 TKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEGV 239
Query: 237 TSGSRKFFLGTDSAPHERGRKE----CACGCAGIYNA-PVALSLYAKVFEEMGALDKLEA 291
G TD APH+ KE G G+ A P AL LY K + +L KL
Sbjct: 240 KRGI-IDCFATDHAPHQTFEKELVEFAMPGIIGLQTALPSALELYRK---GIISLKKLIE 295
Query: 292 FTSFNGPDFYGLPR 305
+ N G+
Sbjct: 296 MFTINPARIIGVDL 309
>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2
{Dictyostelium discoideum [TaxId: 44689]}
Length = 334
Score = 41.1 bits (95), Expect = 1e-04
Identities = 33/294 (11%), Positives = 88/294 (29%), Gaps = 25/294 (8%)
Query: 36 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 95
I + A +++ + + + +T + + EI + + F
Sbjct: 39 IDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSF 98
Query: 96 AVKLYPAGATTNSQDGVTDLFGKCVHV---------LEEMVEQNMPLLVHGEVTDPIVDI 146
+ + + + +F +C + +MV + ++ +T P
Sbjct: 99 KCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHE 158
Query: 147 FDREKVFIDTILQP--LIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLV 202
R + +I V + H+ ++ A + ++ V L
Sbjct: 159 LSRPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLG 218
Query: 203 LNRNALFQGGLRPHN--YCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE-- 258
++ + ++ R P ++ + + V+ + +GTD+ +K
Sbjct: 219 VDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMG 278
Query: 259 ------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGL-PR 305
G G+ + +++ V + TS + + PR
Sbjct: 279 KDDFTKIPNGVNGVEDR-MSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPR 331
>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens
[TaxId: 43663]}
Length = 325
Score = 39.7 bits (91), Expect = 3e-04
Identities = 51/330 (15%), Positives = 97/330 (29%), Gaps = 43/330 (13%)
Query: 10 DWHLHLRDGDLL-KAVVPHSVSH------YGRAIVMPNLKPPITTTAAAVAYRESILKAL 62
D H+H+ D DL + S I MP PP TT A + ++
Sbjct: 4 DEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQA---- 59
Query: 63 PASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHV 122
+ EI+ G V A + D V+D G+ +
Sbjct: 60 -GQRLKVDFALYGGGVPGNLPEIRKMHDAGAVGFKS-MMAASVPGMFDAVSD--GELFEI 115
Query: 123 LEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQ--------------- 167
+E+ ++VH E I + + K + P
Sbjct: 116 FQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQK 175
Query: 168 ---LKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLK 224
++++ H++ D V+ + + LN + P+ P ++
Sbjct: 176 EAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVR 235
Query: 225 REIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE--------CACGCAGIYNAPVALSLY 276
+ + +G G+D H KE G G+ + + + L
Sbjct: 236 SAEMNIRLWEQLENGLIDTL-GSDHGGHPVEDKEPGWKDVWKAGNGALGLETS-LPMMLT 293
Query: 277 AKVFEEMGALDKLEAFTSFNGPDFYGLPRN 306
V + +L++L +G+
Sbjct: 294 NGVNKGRLSLERLVEVMCEKPAKLFGIYPQ 323
>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId:
275]}
Length = 335
Score = 38.0 bits (87), Expect = 0.001
Identities = 39/297 (13%), Positives = 78/297 (26%), Gaps = 23/297 (7%)
Query: 36 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 95
I M ++ F ++ + T +A
Sbjct: 37 IEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFK 96
Query: 96 AVKLYPAGATTNSQDGVTDLF-----GKCVHVLE---EMVEQNMPLLVHGEVTDPIVDIF 147
Y + + L G V E+V + L+ T P
Sbjct: 97 IFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEP 156
Query: 148 DREKVFIDTILQPLI--QRLPQLKVVMEHITTMDAVKFVESC--KEGFVAATVTPQHLVL 203
R + + H++ A+ + + + H +L
Sbjct: 157 SRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLL 216
Query: 204 NRNALFQGGLRPHNYCLPV-LKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRK----- 257
++ +GG+ Y + L+ + +++ + A+ G +GTD P + +K
Sbjct: 217 DKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQG-FIDTVGTDHCPFDTEQKLLGKE 275
Query: 258 ---ECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIK 311
G I + V L V + + S +GL I
Sbjct: 276 AFTAIPNGIPAIEDR-VNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIA 331
>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId:
301298]}
Length = 332
Score = 36.5 bits (83), Expect = 0.003
Identities = 42/293 (14%), Positives = 90/293 (30%), Gaps = 29/293 (9%)
Query: 36 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 95
+ K + +A + E A ++ + + + +E++ + +
Sbjct: 38 VDFCLTKKGESLKSAIATWHEKARGK--AVIDYGFHLMIAEANDQVLEELESVISSEGIT 95
Query: 96 AVKLYPAGATTNSQDGVTDL--------FGKCVHVLEE---MVEQNMPLLVHGEVTDPIV 144
++K++ A D T G V V E +++ + TDPI
Sbjct: 96 SLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIY 155
Query: 145 DIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEG-----FVAATVTPQ 199
+ R + L L ++ + V+ E V PQ
Sbjct: 156 HAYTRPP-EAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQ 214
Query: 200 HLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE- 258
+L L+ + + Q Y RE Q V+ + +G+D P ++
Sbjct: 215 YLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKE 274
Query: 259 --------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGL 303
G I + + + V + +L++ +S +G+
Sbjct: 275 LGRGDFTKIPNGGPLIEDR-LTILYSEGVRQGRISLNQFVDISSTKAAKLFGM 326
>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 334
Score = 30.3 bits (67), Expect = 0.32
Identities = 34/292 (11%), Positives = 72/292 (24%), Gaps = 26/292 (8%)
Query: 36 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 95
I +P + + + E+ + +T + D + L + GV
Sbjct: 39 IDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSW-YDGVREELEVLVQDKGVNS 97
Query: 96 AVKLYPAGATTNSQDGVTDLFGKC---------VH-VLEEMVEQNMPLLVHGEVTDPI-- 143
D VH +++ Q ++ +T P
Sbjct: 98 FQVYMAYKDLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGH 157
Query: 144 VDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGF--VAATVTPQHL 201
E I V + + + A + ++ V L
Sbjct: 158 ALSRPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASL 217
Query: 202 VLNRNALFQGGLR--PHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE- 258
+ + P L + ++++ + G+ P+ +K
Sbjct: 218 GTDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAV 277
Query: 259 -------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGL 303
G GI + + V ++ A TS N + L
Sbjct: 278 GKDNFTLIPEGVNGIEER-MTVVWDKAVATGKMDENQFVAVTSTNAAKIFNL 328
>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Escherichia coli [TaxId: 562]}
Length = 220
Score = 29.8 bits (66), Expect = 0.34
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 72 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 107
M LYL DT+ +K + + AG TTN
Sbjct: 1 MELYL-DTSDVVAVKALSRIFPL-------AGVTTN 28
>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii
[TaxId: 329]}
Length = 330
Score = 29.9 bits (66), Expect = 0.45
Identities = 43/295 (14%), Positives = 89/295 (30%), Gaps = 33/295 (11%)
Query: 36 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 95
+ + A AVA + + A ++ + + + +E+++ G +
Sbjct: 38 VDFCQQDRG-HSLAEAVAKWDGMAGGKSA-IDYGYHIIVLDPTDSVIEELEVLPDLG-IT 94
Query: 96 AVKLYPAGATTNSQDGVTDL--------FGKCVHVLEE---MVEQNMPLLVHGEVTDPIV 144
+ K++ A N D VT L G V V E + V T PI
Sbjct: 95 SFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIY 154
Query: 145 DIFDREKVF--IDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGF--VAATVTPQH 200
R T + + + + H+T ++++ V K A +
Sbjct: 155 HALSRPPRVEAEATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHY 214
Query: 201 LVLNRNALFQGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE- 258
L L + L + Y P + + + +A+ +G + +D +
Sbjct: 215 LYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNALRNG-VFETVSSDHCSWLFKGHKD 273
Query: 259 --------CACGCAGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP 304
G G+ + V E +L + + +G+
Sbjct: 274 RGRNDFRAIPNGAPGVEERLMMVYQG---VNEGRISLTQFVELVATRPAKVFGMF 325
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 29.3 bits (65), Expect = 0.50
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 72 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 107
M ++L DT + +EIK + G+V G TTN
Sbjct: 3 MKIFL-DTANLEEIKKGVEWGIV-------DGVTTN 30
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 29.4 bits (65), Expect = 0.51
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 72 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTN 107
M LYL DT S +EI+ GV+ +G TTN
Sbjct: 1 MELYL-DTASLEEIREIAAWGVL-------SGVTTN 28
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 29.2 bits (65), Expect = 0.65
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 15/70 (21%)
Query: 119 CVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV---------FIDTILQPLIQRL---- 165
V E +Q + D+ +REK FID I L + L
Sbjct: 247 AELVATEFFDQGDRERKELNI--EPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVS 304
Query: 166 PQLKVVMEHI 175
+++
Sbjct: 305 EDCFPLLDGC 314
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide
phosphodiesterase pde4d {Human (Homo sapiens) [TaxId:
9606]}
Length = 326
Score = 29.3 bits (65), Expect = 0.67
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 119 CVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV--------FIDTILQPLIQRL----- 165
++EE Q G I + D+ FID I+ PL +
Sbjct: 248 TDRIMEEFFRQGDRERERG---MEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVH 304
Query: 166 PQLKVVMEHI 175
P + +++ +
Sbjct: 305 PDAQDILDTL 314
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 27.0 bits (58), Expect = 3.9
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 273 LSLYAKVFEEMGALDKLEAFTSFNGPDFY 301
++ A E+ G ++K+ Y
Sbjct: 459 INENADFIEKAGGMEKIFNCQQNENDKIY 487
>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 319
Score = 25.8 bits (56), Expect = 9.2
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 24/115 (20%)
Query: 72 MTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCV------HVLEE 125
T + DT + I + P ATTN L ++EE
Sbjct: 9 FTTVVADTGDFNAID-----------EYKPQDATTNPS-----LILAAAQMPAYQELVEE 52
Query: 126 MVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA 180
+ + G + I + D+ V + I +V DA
Sbjct: 53 AIAYGKK--LGGPQEEQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDA 105
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 25.7 bits (56), Expect = 9.5
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 119 CVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV--------FIDTILQPLIQRL----P 166
+LEE Q+ P+ DR+KV FI +L P+ + + P
Sbjct: 236 VDCLLEEYFMQSD---REKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFP 292
Query: 167 QLKVVM 172
++ +M
Sbjct: 293 MVEEIM 298
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,295,898
Number of extensions: 60029
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 19
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)