Query 019094
Match_columns 346
No_of_seqs 115 out of 1228
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 4.9E-44 1.1E-48 331.9 23.2 295 30-346 32-327 (437)
2 PTZ00206 amino acid transporte 100.0 1E-42 2.2E-47 331.5 24.9 295 35-345 59-357 (467)
3 KOG1304 Amino acid transporter 100.0 2.1E-41 4.6E-46 309.2 18.1 284 34-345 45-341 (449)
4 PF01490 Aa_trans: Transmembra 100.0 1.2E-40 2.6E-45 314.9 1.6 294 34-346 1-294 (409)
5 PLN03074 auxin influx permease 100.0 1.6E-34 3.5E-39 274.2 22.3 280 35-346 45-333 (473)
6 KOG1305 Amino acid transporter 100.0 9.2E-34 2E-38 262.0 15.3 294 33-346 3-301 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.6E-29 5.5E-34 217.8 9.1 283 30-342 111-396 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.1E-27 2.3E-32 224.4 19.4 262 32-316 5-266 (415)
9 PRK10483 tryptophan permease; 99.8 6.4E-19 1.4E-23 163.0 21.6 281 31-339 6-298 (414)
10 PRK09664 tryptophan permease T 99.8 6.8E-19 1.5E-23 162.7 20.1 280 35-339 8-299 (415)
11 TIGR00837 araaP aromatic amino 99.8 6.1E-19 1.3E-23 165.2 17.3 274 42-342 3-287 (381)
12 PF03222 Trp_Tyr_perm: Tryptop 99.8 3.4E-18 7.4E-23 159.4 20.7 278 34-339 1-290 (394)
13 PRK15132 tyrosine transporter 99.8 8.9E-18 1.9E-22 156.0 20.0 273 37-339 4-287 (403)
14 TIGR00814 stp serine transport 99.7 3.1E-15 6.6E-20 139.4 19.6 276 42-339 9-296 (397)
15 PRK10435 cadB lysine/cadaverin 99.7 8.7E-15 1.9E-19 139.4 21.1 245 31-304 2-247 (435)
16 PRK13629 threonine/serine tran 99.7 1.2E-14 2.6E-19 134.8 20.6 280 43-339 26-331 (443)
17 PRK15049 L-asparagine permease 99.6 3.7E-14 8E-19 137.0 22.5 252 31-304 25-280 (499)
18 PRK10655 potE putrescine trans 99.6 2.6E-14 5.7E-19 136.3 20.4 241 32-300 4-245 (438)
19 KOG1287 Amino acid transporter 99.6 4.9E-15 1.1E-19 137.5 13.1 253 28-305 6-265 (479)
20 PRK10644 arginine:agmatin anti 99.6 7.3E-14 1.6E-18 133.5 21.6 245 30-304 4-251 (445)
21 PRK11049 D-alanine/D-serine/gl 99.6 1.7E-13 3.6E-18 131.8 24.0 252 27-302 13-269 (469)
22 PRK10249 phenylalanine transpo 99.6 1.4E-13 3.1E-18 131.9 23.4 249 31-303 18-268 (458)
23 TIGR01773 GABAperm gamma-amino 99.6 3.1E-13 6.8E-18 129.4 24.4 250 30-304 8-261 (452)
24 PRK11387 S-methylmethionine tr 99.6 3.5E-13 7.5E-18 129.7 24.1 250 31-304 11-266 (471)
25 PRK10836 lysine transporter; P 99.6 5.1E-13 1.1E-17 129.1 24.6 255 26-304 7-265 (489)
26 TIGR00906 2A0303 cationic amin 99.6 3E-13 6.4E-18 132.2 23.1 261 30-303 24-290 (557)
27 TIGR00909 2A0306 amino acid tr 99.6 5.5E-13 1.2E-17 127.0 22.5 249 33-302 2-253 (429)
28 TIGR00905 2A0302 transporter, 99.6 8.3E-13 1.8E-17 127.2 23.1 251 33-304 6-258 (473)
29 PRK10580 proY putative proline 99.6 1.7E-12 3.6E-17 124.6 25.0 246 30-299 5-254 (457)
30 PRK11021 putative transporter; 99.6 6E-13 1.3E-17 125.9 21.6 229 37-298 2-231 (410)
31 TIGR00913 2A0310 amino acid pe 99.6 8.2E-13 1.8E-17 127.5 23.0 249 33-302 1-255 (478)
32 TIGR00912 2A0309 spore germina 99.5 2.6E-13 5.6E-18 126.2 17.5 237 35-307 2-241 (359)
33 PRK10746 putative transport pr 99.5 1.6E-12 3.6E-17 124.5 23.4 251 30-304 6-260 (461)
34 PRK10238 aromatic amino acid t 99.5 1.6E-12 3.4E-17 124.6 23.0 241 31-295 9-251 (456)
35 TIGR03810 arg_ornith_anti argi 99.5 2.1E-12 4.5E-17 124.3 22.3 251 34-304 1-254 (468)
36 TIGR00911 2A0308 L-type amino 99.5 1.3E-12 2.7E-17 126.9 19.7 253 29-304 37-295 (501)
37 TIGR00930 2a30 K-Cl cotranspor 99.5 1.3E-12 2.8E-17 133.7 19.4 257 31-301 73-337 (953)
38 PRK11357 frlA putative fructos 99.5 3E-12 6.6E-17 122.4 20.3 245 30-300 4-251 (445)
39 COG1113 AnsP Gamma-aminobutyra 99.5 6.7E-12 1.5E-16 115.1 19.9 255 28-306 7-270 (462)
40 TIGR00908 2A0305 ethanolamine 99.5 6.4E-12 1.4E-16 120.1 19.7 242 31-298 4-245 (442)
41 PRK10197 gamma-aminobutyrate t 99.4 4.6E-11 1E-15 114.2 21.9 230 45-299 3-236 (446)
42 COG0833 LysP Amino acid transp 99.4 5.6E-11 1.2E-15 111.4 19.5 240 32-296 42-286 (541)
43 PF03845 Spore_permease: Spore 99.3 1.2E-10 2.5E-15 106.6 18.6 236 35-307 1-237 (320)
44 COG0531 PotE Amino acid transp 99.3 3.8E-10 8.3E-15 108.5 22.0 253 29-305 7-262 (466)
45 PF13520 AA_permease_2: Amino 99.2 1.5E-10 3.3E-15 110.1 15.2 244 37-306 2-248 (426)
46 TIGR03428 ureacarb_perm permea 99.2 2E-09 4.4E-14 103.8 22.5 257 30-301 9-270 (475)
47 KOG1286 Amino acid transporter 99.2 1.2E-10 2.6E-15 112.3 11.5 262 30-304 26-292 (554)
48 PRK15238 inner membrane transp 99.1 7.3E-09 1.6E-13 100.5 21.0 254 33-299 6-266 (496)
49 PF00324 AA_permease: Amino ac 99.1 8.1E-10 1.8E-14 106.7 12.4 246 45-307 6-263 (478)
50 TIGR00907 2A0304 amino acid pe 99.1 1.5E-08 3.3E-13 98.0 20.4 248 30-293 8-266 (482)
51 KOG3832 Predicted amino acid t 99.0 4.3E-09 9.4E-14 86.1 10.1 222 37-270 13-302 (319)
52 TIGR00910 2A0307_GadC glutamat 98.9 1.7E-07 3.6E-12 91.1 20.2 239 33-297 3-247 (507)
53 TIGR03813 put_Glu_GABA_T putat 98.8 9E-07 2E-11 85.5 21.2 248 35-304 2-254 (474)
54 COG3949 Uncharacterized membra 98.6 1.5E-06 3.3E-11 76.9 15.4 217 39-294 6-228 (349)
55 KOG1289 Amino acid transporter 98.4 2.8E-05 6E-10 73.6 16.7 238 56-307 72-315 (550)
56 PRK11375 allantoin permease; P 98.2 0.00085 1.8E-08 64.8 23.6 226 64-306 57-293 (484)
57 TIGR00800 ncs1 NCS1 nucleoside 98.1 0.00063 1.4E-08 65.1 20.7 256 31-306 9-273 (442)
58 TIGR02119 panF sodium/pantothe 97.9 0.0023 5.1E-08 61.8 20.6 154 31-204 37-195 (471)
59 PRK09442 panF sodium/panthothe 97.9 0.002 4.3E-08 62.4 19.9 154 31-204 38-196 (483)
60 PRK12488 acetate permease; Pro 97.8 0.005 1.1E-07 60.6 20.8 154 31-206 64-220 (549)
61 COG1953 FUI1 Cytosine/uracil/t 97.8 0.013 2.8E-07 55.5 22.2 271 26-316 31-318 (497)
62 TIGR00796 livcs branched-chain 97.7 0.0047 1E-07 57.5 18.7 75 44-129 3-80 (378)
63 TIGR00813 sss transporter, SSS 97.7 0.0016 3.6E-08 61.6 16.1 149 33-202 2-152 (407)
64 TIGR00835 agcS amino acid carr 97.7 0.0016 3.5E-08 61.2 15.2 150 34-202 45-201 (425)
65 COG0591 PutP Na+/proline sympo 97.7 0.0055 1.2E-07 59.4 19.3 160 31-207 35-196 (493)
66 PRK09395 actP acetate permease 97.6 0.013 2.9E-07 57.7 21.0 151 31-202 66-218 (551)
67 PF00474 SSF: Sodium:solute sy 97.6 0.00071 1.5E-08 64.1 11.2 153 33-206 5-160 (406)
68 TIGR02711 symport_actP cation/ 97.5 0.013 2.9E-07 57.7 19.0 150 31-202 64-216 (549)
69 TIGR03648 Na_symport_lg probab 97.4 0.034 7.3E-07 54.9 21.4 151 31-202 29-181 (552)
70 PRK11017 codB cytosine permeas 97.4 0.017 3.7E-07 54.6 18.2 205 64-305 39-244 (404)
71 TIGR02358 thia_cytX probable h 97.3 0.036 7.8E-07 52.1 18.8 227 38-306 7-234 (386)
72 KOG2083 Na+/K+ symporter [Inor 97.3 0.0025 5.5E-08 60.9 10.6 230 39-296 38-275 (643)
73 TIGR02121 Na_Pro_sym sodium/pr 97.2 0.043 9.4E-07 53.3 19.2 156 31-203 33-193 (487)
74 COG1457 CodB Purine-cytosine p 97.2 0.05 1.1E-06 51.4 17.9 172 107-307 85-258 (442)
75 PRK15419 proline:sodium sympor 97.0 0.099 2.1E-06 51.0 19.6 155 31-202 37-196 (502)
76 PF02554 CstA: Carbon starvati 97.0 0.16 3.5E-06 46.5 18.8 145 37-201 53-198 (376)
77 KOG1288 Amino acid transporter 96.7 0.0098 2.1E-07 57.9 9.5 231 55-299 88-349 (945)
78 PRK10484 putative transporter; 96.6 0.56 1.2E-05 46.0 21.1 158 31-203 35-198 (523)
79 PF02133 Transp_cyt_pur: Perme 96.3 0.035 7.7E-07 53.1 10.6 112 32-150 5-118 (440)
80 COG4147 DhlC Predicted symport 96.1 0.2 4.3E-06 47.2 13.8 229 49-301 57-293 (529)
81 PF01235 Na_Ala_symp: Sodium:a 95.6 0.84 1.8E-05 43.0 16.0 53 30-83 13-66 (416)
82 PHA02764 hypothetical protein; 95.1 1.8 3.8E-05 39.0 15.2 97 30-132 8-106 (399)
83 COG1114 BrnQ Branched-chain am 95.0 0.47 1E-05 44.2 12.0 106 61-184 226-331 (431)
84 TIGR00796 livcs branched-chain 95.0 0.32 6.9E-06 45.4 11.2 69 102-183 254-322 (378)
85 PF05525 Branch_AA_trans: Bran 95.0 0.77 1.7E-05 43.5 13.6 69 102-183 260-328 (427)
86 PRK15015 carbon starvation pro 94.9 0.52 1.1E-05 46.4 12.6 98 41-144 88-186 (701)
87 KOG2466 Uridine permease/thiam 94.1 3.1 6.7E-05 39.7 15.1 270 26-316 46-332 (572)
88 KOG2082 K+/Cl- cotransporter K 93.2 0.69 1.5E-05 46.1 9.7 109 37-149 116-226 (1075)
89 COG1115 AlsT Na+/alanine sympo 92.6 7.5 0.00016 36.8 15.2 156 31-202 58-218 (452)
90 COG1966 CstA Carbon starvation 92.2 12 0.00026 36.4 18.4 98 39-142 55-153 (575)
91 PRK15433 branched-chain amino 90.8 10 0.00022 36.2 14.2 229 37-302 9-253 (439)
92 PF01566 Nramp: Natural resist 89.9 13 0.00028 34.5 14.3 78 104-195 43-122 (358)
93 PRK15433 branched-chain amino 89.3 6.7 0.00014 37.4 11.8 66 104-183 266-331 (439)
94 PRK00701 manganese transport p 88.9 22 0.00048 34.0 17.0 45 104-148 95-139 (439)
95 KOG2349 Na+:iodide/myo-inosito 87.1 4.1 8.9E-05 40.0 9.0 246 33-304 44-302 (585)
96 PF05525 Branch_AA_trans: Bran 85.9 33 0.00071 32.7 17.3 231 38-304 5-251 (427)
97 COG4145 PanF Na+/panthothenate 84.1 36 0.00078 31.7 14.8 148 33-202 38-192 (473)
98 COG0733 Na+-dependent transpor 80.2 42 0.00092 31.9 12.3 238 40-296 13-266 (439)
99 KOG1289 Amino acid transporter 77.0 48 0.001 32.4 11.8 47 104-150 326-372 (550)
100 PF00209 SNF: Sodium:neurotran 75.1 88 0.0019 30.7 17.5 100 37-148 6-110 (523)
101 COG1914 MntH Mn2+ and Fe2+ tra 71.9 93 0.002 29.6 16.9 73 104-190 78-150 (416)
102 KOG3659 Sodium-neurotransmitte 70.2 1.2E+02 0.0026 30.2 13.6 86 38-130 84-174 (629)
103 PF01235 Na_Ala_symp: Sodium:a 64.7 59 0.0013 30.9 9.5 85 110-207 300-384 (416)
104 TIGR01197 nramp NRAMP (natural 57.0 1.7E+02 0.0038 27.5 14.4 45 104-148 65-109 (390)
105 PRK13183 psbN photosystem II r 48.7 30 0.00064 21.4 3.0 30 277-306 4-33 (46)
106 COG4858 Uncharacterized membra 47.0 1.7E+02 0.0036 24.4 9.0 60 30-92 89-149 (226)
107 CHL00020 psbN photosystem II p 45.9 27 0.00059 21.3 2.6 27 280-306 4-30 (43)
108 cd08765 Cyt_b561_CYBRD1 Verteb 38.7 83 0.0018 25.3 5.2 67 275-345 44-110 (153)
109 PF02468 PsbN: Photosystem II 37.3 31 0.00067 21.1 1.9 27 281-307 5-31 (43)
110 TIGR00909 2A0306 amino acid tr 37.2 3.6E+02 0.0078 25.4 10.4 47 104-150 265-311 (429)
111 cd08766 Cyt_b561_ACYB-1_like P 35.9 94 0.002 24.7 5.1 67 275-345 37-103 (144)
112 PF03169 OPT: OPT oligopeptide 33.1 3.6E+02 0.0077 27.2 9.9 58 51-115 368-427 (624)
113 cd08763 Cyt_b561_CYB561 Verteb 28.5 1.3E+02 0.0029 23.8 4.8 67 275-345 37-103 (143)
114 PF00324 AA_permease: Amino ac 27.9 3E+02 0.0065 26.5 8.2 47 104-150 275-321 (478)
115 TIGR00835 agcS amino acid carr 24.2 6.4E+02 0.014 24.1 11.0 38 112-149 329-366 (425)
116 PF02028 BCCT: BCCT family tra 23.9 6.9E+02 0.015 24.4 11.3 90 105-203 164-256 (485)
117 KOG3660 Sodium-neurotransmitte 23.5 7.9E+02 0.017 25.0 10.2 29 37-65 39-68 (629)
118 PLN02680 carbon-monoxide oxyge 23.3 5E+02 0.011 22.5 8.9 67 275-345 76-142 (232)
119 PRK09950 putative transporter; 23.1 4.3E+02 0.0094 25.9 8.1 67 132-198 411-479 (506)
120 KOG1619 Cytochrome b [Energy p 22.5 4.3E+02 0.0093 23.0 7.0 67 275-345 85-151 (245)
121 PLN02810 carbon-monoxide oxyge 22.1 2.2E+02 0.0047 24.7 5.2 67 275-345 76-142 (231)
122 cd08762 Cyt_b561_CYBASC3 Verte 22.0 2E+02 0.0042 23.9 4.7 67 275-345 67-133 (179)
123 KOG1287 Amino acid transporter 21.4 6.9E+02 0.015 24.3 8.9 43 105-148 275-317 (479)
124 TIGR00842 bcct choline/carniti 21.1 6E+02 0.013 24.6 8.5 126 79-210 96-226 (453)
125 COG3158 Kup K+ transporter [In 20.6 6.5E+02 0.014 25.1 8.5 58 67-125 55-112 (627)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-44 Score=331.85 Aligned_cols=295 Identities=39% Similarity=0.651 Sum_probs=263.7
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
..++|+.||+++.++.++.++|.|+|++||++++.||..|+++++..++++.||+.+|.+|++.++++.++|.++|.|++
T Consensus 32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 32 ITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccch
Q 019094 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (346)
+++||+++++++.+.+.+..++.|+.|++..+|++..+.+.+|.+.. ..+...|++++.++.+|++++||++.+
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l 185 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSL 185 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchh
Confidence 99999999999999999999999999999999999999997766432 223678899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHH-HhhhhhhhhhhccchhHHHhHhhhc
Q 019094 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRA-FQAIGDVAFAYAFSTVLVEIQDTLK 268 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fsf~~~~~i~~i~~em~ 268 (346)
++.|..+.+..+++..+.+..+...+.+........... .+. .. +++++++.|+|.||..+|+|+.+||
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~~----~~~f~a~g~iaFaf~gH~v~peIq~tMk 255 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GTI----PTVFTALGIIAFAYGGHAVLPEIQHTMK 255 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CCC----cchhhhhhheeeeecCCeeeeehHhhcC
Confidence 999999999999888888777776665543222221111 010 11 7999999999999999999999999
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhccccccC
Q 019094 269 SSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM 346 (346)
Q Consensus 269 ~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 346 (346)
+| ++++|++.+++.+++++|..+++.||.+|||+++++++.|++ +|.|+...+++++.+|++.+|+++++|+
T Consensus 256 ~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl 327 (437)
T KOG1303|consen 256 SP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPL 327 (437)
T ss_pred Cc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcch
Confidence 99 779999999999999999999999999999999999999996 6899999999999999999999999995
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1e-42 Score=331.47 Aligned_cols=295 Identities=16% Similarity=0.218 Sum_probs=233.8
Q ss_pred cccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcC
Q 019094 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (346)
Q Consensus 35 ~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G 114 (346)
.++..++.+|++|+++|+|+|++|++|+++||++|+++++++++++.|+.+++.++.++.+ ..+|+|++++++|
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~------~~sY~~la~~~~G 132 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN------IRTYEGVARVLLG 132 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCHHHHHHHHhC
Confidence 3456799999999999999999999999999999999999999999999999999886533 4599999999999
Q ss_pred CcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHH
Q 019094 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSI 194 (346)
Q Consensus 115 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~ 194 (346)
|++++++++.+.+.++|.|++|+++.+|.++.+++..... + .-.....++..+.++..++++|++++|++++++++|.
T Consensus 133 ~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~-~-~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 133 PWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP-D-FLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-c-hhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence 9999999999999999999999999999999988631100 0 0000011222344456778899999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccc----cCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCC
Q 019094 195 LAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGV----DVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (346)
Q Consensus 195 ~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p 270 (346)
+++.+++...+.+++....+..+.. .+..+.+. +...-....+.+.++++++|||.||.+++++++|||+|
T Consensus 211 i~~~~i~~~vi~ivi~~~~~~~~~~-----~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 211 IAVSFMVYLVIVIVVHSCMNGLPEN-----IKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHhhhhhhhhcccCccc-----ccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 9998777544444333332222111 00001111 01111112357899999999999999999999999998
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhcccccc
Q 019094 271 PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRL 345 (346)
Q Consensus 271 ~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (346)
++ +|+.++...++.+++++|.++|++||++||+++++|+++|++. .+|....+++++++++++.+||++.+|
T Consensus 286 t~--~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p 357 (467)
T PTZ00206 286 SV--GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMA 357 (467)
T ss_pred ch--hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhh
Confidence 54 8999999999999999999999999999999999999999931 346678888999999999999999987
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-41 Score=309.17 Aligned_cols=284 Identities=20% Similarity=0.284 Sum_probs=241.1
Q ss_pred ccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHH-
Q 019094 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS- 112 (346)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~- 112 (346)
+..|..++..++.|.++|+|+|++|++|+++|++.|.+..++++.++.||++.+++|.++...+.++...+|.+.++.+
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~ 124 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAM 124 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence 3467999999999999999999999999999999999999999999999999999998654433333345777777665
Q ss_pred ---------cCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcC
Q 019094 113 ---------LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (346)
Q Consensus 113 ---------~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 183 (346)
+||+++.+++..+.++++|.|.+|+++.+++++++.+. +.....+.+.++.+..+..++++++
T Consensus 125 ~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~--------~~~~~~s~~~~i~~~~~~~lll~~I 196 (449)
T KOG1304|consen 125 EGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE--------HSPGVLSVRLYILIQLPPLLLLNLI 196 (449)
T ss_pred cCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc--------cCCCCccHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999999971 1111456777888889999999999
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHh
Q 019094 184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (346)
Q Consensus 184 ~~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i 263 (346)
||++.++.+|.++-++++..+.++.. +.....+..++ .+.-.++.++..++|+.+|||+|+.++.|+
T Consensus 197 r~Lk~Lsp~Sl~Anv~~~~g~~ii~~----y~~~~~~~~~~---------~~~~~~~~~~~lf~GtaifafEGig~VLPl 263 (449)
T KOG1304|consen 197 RNLKILSPFSLFANVFILVGLAIIMY----YLVQDLPPTSD---------LPAVTGWSGLPLFFGTAIFAFEGIGMVLPL 263 (449)
T ss_pred HhhHHhhHHHHHHHHHHHHHHHHHHH----HHHhccCCccc---------cccccchhhhHHHHHHHHHHhccceEEEeh
Confidence 99999999999999988864444332 33332221111 122223457788999999999999999999
Q ss_pred HhhhcCCCccccchh---hhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhc
Q 019094 264 QDTLKSSPPENKSMK---RATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQ 340 (346)
Q Consensus 264 ~~em~~p~~~~~~~~---~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~p 340 (346)
.++||+| ++++ +++..++.+++++|+.+|++||++||+++++.+++|+| + +|+.+.+++++++++.++||
T Consensus 264 En~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~p 336 (449)
T KOG1304|consen 264 ENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYP 336 (449)
T ss_pred hhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCc
Confidence 9999999 8999 99999999999999999999999999999999999998 4 99999999999999999999
Q ss_pred ccccc
Q 019094 341 VNSRL 345 (346)
Q Consensus 341 l~~~p 345 (346)
++.+|
T Consensus 337 LQ~yv 341 (449)
T KOG1304|consen 337 LQFYV 341 (449)
T ss_pred hhhhh
Confidence 99987
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.2e-40 Score=314.86 Aligned_cols=294 Identities=27% Similarity=0.418 Sum_probs=245.1
Q ss_pred ccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHc
Q 019094 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (346)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~ 113 (346)
||+|+++++++++|+++|+|+|++|+++++.||++|+++++++++++.+|.+++.|+.++.+ .+.+..+|+|++++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987643 2223569999999999
Q ss_pred CCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHH
Q 019094 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS 193 (346)
Q Consensus 114 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s 193 (346)
||++++++++++.+.++|.+++|.+..+|.+.++++..+.+ ...++..+.++..++++|++++|+++++++++
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHh
Confidence 99999999999999999999999999999999998753322 24557778888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCcc
Q 019094 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273 (346)
Q Consensus 194 ~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~ 273 (346)
.++.++++.+.++.+... .......+.+... .+.....+++++++++++++|||.+|.++|++.+|||+|++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~ 224 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYI-ISYGPGEPSGVPS------PPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF 224 (409)
T ss_pred hhhhhccceeeeeeccee-eeeeccccccccc------ccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc
Confidence 999998875322222111 1111111111110 011234456789999999999999999999999999999321
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhccccccC
Q 019094 274 NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM 346 (346)
Q Consensus 274 ~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 346 (346)
+|+.++...++.+++++|.++|++||++||+++++|++.|+| ++++...++++++.++++.+||++.+|.
T Consensus 225 -~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~ 294 (409)
T PF01490_consen 225 -KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPA 294 (409)
T ss_pred -cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Ccccccccccccchhhhhhccccccchh
Confidence 356699999999999999999999999999999999999998 4557999999999999999999999984
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.6e-34 Score=274.16 Aligned_cols=280 Identities=15% Similarity=0.143 Sum_probs=223.4
Q ss_pred cccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccC---CCCCCCc---c-cccHHH
Q 019094 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRS---PDPVTGK---R-NYTYMD 107 (346)
Q Consensus 35 ~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~---~~~~~~~---~-~~~y~~ 107 (346)
.++..++.+++.+..+|.|+|+||++|++.||++|++.+++.++++.||++++.+++.+ .+++.+. + ..+|.|
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999987522 1222221 1 136899
Q ss_pred HHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCcc
Q 019094 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (346)
Q Consensus 108 i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~ 187 (346)
+++..+||+++.+..+...+.+++.|+.|++..++.+..+-+ ..+.+.|++++.++++|++++|+++
T Consensus 125 ~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~sl~ 191 (473)
T PLN03074 125 VLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPSFH 191 (473)
T ss_pred HHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccCHH
Confidence 999999999999999999999999999999988877665532 3456778888888899999999999
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhh
Q 019094 188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTL 267 (346)
Q Consensus 188 ~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em 267 (346)
+++++|.++..+++...+.+++..+....+ +..+ .....++..++.++++++|+|+||..+|++++||
T Consensus 192 ~l~~~S~ig~~~tl~~av~i~i~~i~~~~~-----~~~~-------~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M 259 (473)
T PLN03074 192 NYRIWSFLGLLMTTYTAWYMTIAALSHGQV-----EGVK-------HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM 259 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCC-------CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhc
Confidence 999999999887664333322222222111 1010 0112244467778888999999999999999999
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccCCCCC--cccccccCCCCchHHHHHHHHHHHHHHhhhhcccccc
Q 019094 268 KSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP--GNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRL 345 (346)
Q Consensus 268 ~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~--~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (346)
|+| ++++++...+...++.+|+.+++.||+.|||+++ .+.++|+| ++....++++++++++..+||++.+|
T Consensus 260 ~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp---~~~~~~~~~~~~~i~~~~sy~l~~~p 332 (473)
T PLN03074 260 WKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP---RSGWRDAAVILMLIHQFITFGFACTP 332 (473)
T ss_pred cCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC---CchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999 8899999999999999999999999999999976 45677787 23357899999999999999999887
Q ss_pred C
Q 019094 346 M 346 (346)
Q Consensus 346 ~ 346 (346)
+
T Consensus 333 ~ 333 (473)
T PLN03074 333 L 333 (473)
T ss_pred H
Confidence 4
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-34 Score=262.05 Aligned_cols=294 Identities=19% Similarity=0.306 Sum_probs=238.3
Q ss_pred cccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~ 112 (346)
+++.|...++++++|+++|+|++++|++|++.|.+.|++++.+++.++.++.+++.++.++.+ ..+|+++++..
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~------~~ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG------ERTYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC------CCCHHHHHHHH
Confidence 345578899999999999999999999999999999999999999999999999999987755 23999999999
Q ss_pred cCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcc-hhHHHHHHHHHHhcCCCccchhh
Q 019094 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNP-LMIIFACIQIVLSQIPNFHKLSW 191 (346)
Q Consensus 113 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~pl~~~~~l~~l~~ 191 (346)
+|+.++....+.......| +++|++..+|.++.+......+++.... +.+++. +++....++.|+++.|+++.+++
T Consensus 77 ~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~ 153 (411)
T KOG1305|consen 77 FGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKNLDSLKY 153 (411)
T ss_pred cCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHhhhhHHH
Confidence 9999966666666666666 7999999999999777643332222111 333444 56777889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCC
Q 019094 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP 271 (346)
Q Consensus 192 ~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~ 271 (346)
.|.++..+.+.+.++++...........+.. .+.+....+++.+.++++.+|+|.||.+..++++|||||+
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s 224 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLS---------YLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRS 224 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcc---------cccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCch
Confidence 9999999998766665544333221001101 1112222336889999999999999999999999999994
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCch----HHHHHHHHHHHHHHhhhhccccccC
Q 019094 272 PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPF----WLVDFANACIAVHLIGAYQVNSRLM 346 (346)
Q Consensus 272 ~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~----~~~~~~~~~~~i~~~~s~pl~~~p~ 346 (346)
++++.++...+...+.++|..+|.+||+.|||++.+|++.++|...+. +....++.++.++++..+|+..+|.
T Consensus 225 --~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPl 301 (411)
T KOG1305|consen 225 --VKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPL 301 (411)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchH
Confidence 589999999999999999999999999999999999999999843322 2468999999999999999999984
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=2.6e-29 Score=217.82 Aligned_cols=283 Identities=16% Similarity=0.216 Sum_probs=234.1
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC--cccccHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTG--KRNYTYMD 107 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~--~~~~~y~~ 107 (346)
++...|++-+++..++.|++-|-=++++|++..-.|+. ++..++.++.++.||+.++++|..+.++..+ +...+|.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 45567889999999999999999999999999888877 8999999999999999999999977665211 11349999
Q ss_pred HHHHHcCC-cchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCc
Q 019094 108 VVRASLGG-RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNF 186 (346)
Q Consensus 108 i~~~~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l 186 (346)
++..+++| .+++.+.+.+.+....+|+.|+++.+|.+..-+|.. ..+.+-|+++....++|.+++|++
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk~L 258 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLKDL 258 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHHHH
Confidence 99998887 566999999999999999999999999999877621 345677999999999999999998
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhh
Q 019094 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (346)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e 266 (346)
+..+.+|.+-+++-+..-++++.+++... .+.... .++...+.-.+...+++++|+|-.|.-+|++...
T Consensus 259 k~VS~lSf~ct~sH~viN~i~v~YCLs~~-~dW~ws----------kv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN 327 (524)
T KOG4303|consen 259 KIVSRLSFFCTISHLVINLIMVLYCLSFV-SDWSWS----------KVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN 327 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccce----------eEEEEEEcccCceEEEEEEEeeeceeeccccccc
Confidence 88888888777777655555555554332 222111 1112223335668899999999999999999999
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhccc
Q 019094 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVN 342 (346)
Q Consensus 267 m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 342 (346)
|++| .++...+..+=+...++-.++|.+||++|++.+++.|.+|+| +.-...+++++.++.-+.|||+=
T Consensus 328 M~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPLP 396 (524)
T KOG4303|consen 328 MKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPLP 396 (524)
T ss_pred cCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCch
Confidence 9999 788888889999999999999999999999999999999997 45678899999999999999973
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.96 E-value=1.1e-27 Score=224.44 Aligned_cols=262 Identities=20% Similarity=0.220 Sum_probs=215.1
Q ss_pred CcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
..++.+...+++++.++++|+|+|++|++++..|++++++++++.+.++.++.+++.|+..+.+.. ..++.+++++
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~~~ 80 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLVED 80 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHHHH
Confidence 345567889999999999999999999999999999999999999999999999999999775521 1389999999
Q ss_pred HcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhh
Q 019094 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW 191 (346)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~ 191 (346)
.+||++++++++.+.+.+++.+.+|.+..+|.++++++...... ..++....+++..++.++++.++...++.
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-------~~~r~~~~lif~~~~~~l~~~~~~~~lk~ 153 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-------PLPRKLGSLIFALVLAFLSWLGTLAVLKI 153 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-------CcchHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 99999999999999999999999999999999999998533221 13466677777888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCC
Q 019094 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP 271 (346)
Q Consensus 192 ~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~ 271 (346)
.+.+....+..+++..+.+. +..+.+ ..... +...+..+.....++|..+|||.||+++|++.+|||++.
T Consensus 154 ts~l~~~~v~~~~~l~~~~~-----~~~~~~-~l~~~----~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~ 223 (415)
T COG0814 154 TSLLVFGKVIYLVLLVVYLI-----PHWNPA-NLFAL----PSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS 223 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----cccCHH-HHhcc----cccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccch
Confidence 99999888776444433221 111100 00000 000023445778999999999999999999999999984
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccC
Q 019094 272 PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFG 316 (346)
Q Consensus 272 ~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~ 316 (346)
+++.+|+..++..+..++|..+++++|..+|+++.++++.+.+
T Consensus 224 --~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~ 266 (415)
T COG0814 224 --KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE 266 (415)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC
Confidence 2449999999999999999999999999999999999999997
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.83 E-value=6.4e-19 Score=163.02 Aligned_cols=281 Identities=11% Similarity=0.097 Sum_probs=191.9
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
.++++++...+++.+.+++||+|+|++|.+.++.|+.++++++++++++..+|+.++.|+..+.++ ..++..+++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma~ 80 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTITK 80 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999766432 348999999
Q ss_pred HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchh
Q 019094 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (346)
+.+||.++.+..+...+..++.+.+|+...|+.+++.++.... ..++..-.+++.++.-.+.+.. .+...
T Consensus 81 ~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~---------~i~~~~~~llF~~~~~~iv~~g-t~~vd 150 (414)
T PRK10483 81 DLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSL---------NVPARAAGFGFALLVAFVVWLS-TKAVS 150 (414)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCC---------CCcHHHHHHHHHHHHHHHHHhh-hhHHH
Confidence 9999999999999999999999999999999999999863100 1222333334444444444432 34444
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCC
Q 019094 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (346)
Q Consensus 191 ~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p 270 (346)
+++.+-....+...+..+.. ..++-+.+. ..+ .++.....+...+.+.++..+||..|+++|++.+.+++.
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~----l~~~i~~~~-L~~----~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d 221 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGS----LLGHVQPAT-LFN----VAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD 221 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhcCHHH-Hhc----cccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC
Confidence 44444433333211222211 112111100 000 001111122246789999999999999999999998864
Q ss_pred CccccchhhhHHHHHHHHHHHHHh--hhhheeec---------cCCCCCcccccccCC-CCchHHHHHHHHHHHHHHhhh
Q 019094 271 PPENKSMKRATAVGVTTTTLFYIM--CGVMGYLA---------FGNDAPGNFLTGFGF-YEPFWLVDFANACIAVHLIGA 338 (346)
Q Consensus 271 ~~~~~~~~~~~~~s~~~~~~~y~~--~~~~gy~~---------fg~~~~~~il~n~~~-~~~~~~~~~~~~~~~i~~~~s 338 (346)
+||.+|++..+..+..++|+. ..+.|-.. -|++. +..+..+.. .+..+...+..++..+.+.+|
T Consensus 222 ---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TS 297 (414)
T PRK10483 222 ---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASS 297 (414)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 379999999999999999995 33433322 12221 111122211 134466677888888888888
Q ss_pred h
Q 019094 339 Y 339 (346)
Q Consensus 339 ~ 339 (346)
|
T Consensus 298 F 298 (414)
T PRK10483 298 F 298 (414)
T ss_pred H
Confidence 6
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.83 E-value=6.8e-19 Score=162.69 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=187.5
Q ss_pred cccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcC
Q 019094 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (346)
Q Consensus 35 ~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G 114 (346)
|.+...+++.+.+++||+|+|++|.+.++.|+.++++++++++++..+|+.++.|+..+.++ ..++..++++.+|
T Consensus 8 ~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~~~LG 82 (415)
T PRK09664 8 KHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITKDLIG 82 (415)
T ss_pred ccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHcC
Confidence 33677899999999999999999999999999999999999999999999999999866542 3489999999999
Q ss_pred CcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHH
Q 019094 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSI 194 (346)
Q Consensus 115 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~ 194 (346)
|.++.+..+...+..++.+.+|+...|+.+++.++... .. ..+.....++++++.-++.+.. -+...+.+.
T Consensus 83 ~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~-------~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr 153 (415)
T PRK09664 83 NTWNIISGITVAFVLYILTYAYISANGAIISETISMNL-GY-------HANPRIVGICTAIFVASVLWIS-SLAASRITS 153 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cC-------CCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHH
Confidence 99999999999999999999999999999999986311 00 1222223344444444444433 244444444
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhh-HHHHHhhhhhhhhhhccchhHHHhHhhhcCCCcc
Q 019094 195 LAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEK-VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273 (346)
Q Consensus 195 ~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~ 273 (346)
+-....+...+..+.. ..++-+.+. ..+. +....... +...+.++|+..+||..|+++|++.+.+++.
T Consensus 154 ~l~~~~ii~f~~~~~~----l~~~i~~~~-L~~~---~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d--- 222 (415)
T PRK09664 154 LFLGLKIISFVIVFGS----FFFQVDYSI-LRDA---TSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR--- 222 (415)
T ss_pred HHHHHHHHHHHHHHHH----HhhcccHHH-HhcC---ccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc---
Confidence 3333322211111111 111111010 0000 00000111 1236678999999999999999999998755
Q ss_pred ccchhhhHHHHHHHHHHHHH--hhhhheee---------ccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhh
Q 019094 274 NKSMKRATAVGVTTTTLFYI--MCGVMGYL---------AFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAY 339 (346)
Q Consensus 274 ~~~~~~~~~~s~~~~~~~y~--~~~~~gy~---------~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~ 339 (346)
+||.+|++..+..+..++|. ...+.|-. .-|++++.-+..-....+..+...+..++..+.+.+||
T Consensus 223 ~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSF 299 (415)
T PRK09664 223 KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSF 299 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHH
Confidence 38899999999999988885 33333322 22333322112111112455777788888888888887
No 11
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.81 E-value=6.1e-19 Score=165.19 Aligned_cols=274 Identities=12% Similarity=0.080 Sum_probs=190.8
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhH
Q 019094 42 SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC 121 (346)
Q Consensus 42 ~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~ 121 (346)
++.++++++|+|++++|..+++.|..++++.+++.++++.+++.++.|+.++.++ ..++.+++++.+||+++++.
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-----~~~~~~~~~~~~G~~~g~~~ 77 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-----GASFNTIAKDLLGKTGNIIA 77 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhCHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999876542 23799999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHHHHHHHH
Q 019094 122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 201 (346)
Q Consensus 122 ~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 201 (346)
.+...+.++..+.+|....++.+..+++.+... ..+.....+++.+++. ....+..+...+++.+.+...+
T Consensus 78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~-~l~~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFG-SFVWLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHH-HHHHhchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999988632111 1122222222333333 3344566777777777766655
Q ss_pred HHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCccccchhhhH
Q 019094 202 AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRAT 281 (346)
Q Consensus 202 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~~~~~~~~~ 281 (346)
...+..++....+. +.++..+ .+ .....+.+...+++...++|.+|.+++++.+|++++ +||.+|++
T Consensus 149 ~~l~~~ii~~~~~~----~~~~~~~---~~---~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~rai 215 (381)
T TIGR00837 149 IAFALVFSGLLPHV----KGDLLLD---VA---LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSI 215 (381)
T ss_pred HHHHHHHHHHHhhc----cHHHHhc---Cc---cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHH
Confidence 43322222222111 1111000 00 001123367788899999999998999999999865 28999999
Q ss_pred HHHHHHHHHHHHhhhhheeeccCCCCCcccc----------cccCC-CCchHHHHHHHHHHHHHHhhhhccc
Q 019094 282 AVGVTTTTLFYIMCGVMGYLAFGNDAPGNFL----------TGFGF-YEPFWLVDFANACIAVHLIGAYQVN 342 (346)
Q Consensus 282 ~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il----------~n~~~-~~~~~~~~~~~~~~~i~~~~s~pl~ 342 (346)
..+..++.++|.++.+.....++.+.-.+.. +.+.. .+..+...++.++..+.+++|+.-+
T Consensus 216 i~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~ 287 (381)
T TIGR00837 216 LIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGV 287 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877666665533211111 11110 1234567788888888888887643
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.81 E-value=3.4e-18 Score=159.40 Aligned_cols=278 Identities=13% Similarity=0.192 Sum_probs=187.6
Q ss_pred ccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHc
Q 019094 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (346)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~ 113 (346)
|+.+.+.+++.+.++++|+|+|++|.+.+..|..++.+++++++.+..+++.++.|...+.++ ..+|.+++++.+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~l 75 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYL 75 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHh
Confidence 345788999999999999999999999999999999999999999999999999998866543 348999999999
Q ss_pred CCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHH
Q 019094 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS 193 (346)
Q Consensus 114 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s 193 (346)
||+++++..+...+..++.+.+|....++.++++++.... ...+++.-..++.++...+.... -+.....+
T Consensus 76 G~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--------~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n 146 (394)
T PF03222_consen 76 GKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--------TDLSPWLSSLLFTIIFGGIVYFG-TKAVDRIN 146 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 9999999999999999999999999999999999974221 01222222233333322332222 22333333
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCcc
Q 019094 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273 (346)
Q Consensus 194 ~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~ 273 (346)
.+-+...+...+..+. ...+.-+.+. ... ..+...++...+.++|+.++||..|+++|++.+.+++.
T Consensus 147 ~~lv~~~i~~~~~l~~----~~~p~~~~~~-L~~-----~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d--- 213 (394)
T PF03222_consen 147 RVLVFGMIISFIILVV----YLIPHWNPSN-LLD-----APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD--- 213 (394)
T ss_pred HHHHHHHHHHHHHHHH----HHhhhcCHHH-hhc-----cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---
Confidence 3333322221111111 1222111111 000 00112334467799999999999999999999999865
Q ss_pred ccchhhhHHHHHHHHHHHHHhh--hhheeec---------cCCCCCcccccccCC-CCchHHHHHHHHHHHHHHhhhh
Q 019094 274 NKSMKRATAVGVTTTTLFYIMC--GVMGYLA---------FGNDAPGNFLTGFGF-YEPFWLVDFANACIAVHLIGAY 339 (346)
Q Consensus 274 ~~~~~~~~~~s~~~~~~~y~~~--~~~gy~~---------fg~~~~~~il~n~~~-~~~~~~~~~~~~~~~i~~~~s~ 339 (346)
+||.+|++..+..+..++|+.. .+.|-+. -+++. +.+...+.. .+..+......++..+.+.+||
T Consensus 214 ~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSF 290 (394)
T PF03222_consen 214 PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV-SALVSALANVSGSPWISILGSIFAFFAIATSF 290 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh-HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999998854 3333221 11111 111111111 1345567778888888888876
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.79 E-value=8.9e-18 Score=156.03 Aligned_cols=273 Identities=12% Similarity=0.132 Sum_probs=184.9
Q ss_pred cHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCc
Q 019094 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR 116 (346)
Q Consensus 37 s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~ 116 (346)
+...+++.+.++++|+|+|++|.+.+..|.+++++++++++.+..++++.+.|+..+.++ ..++.+++++.+||+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-----~~~~~~~a~~~LG~~ 78 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-----DTGLGTLAKRYLGRY 78 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHHhChH
Confidence 678899999999999999999999999999999999999999999999999997655331 247999999999999
Q ss_pred chhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHHH
Q 019094 117 SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILA 196 (346)
Q Consensus 117 ~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~ 196 (346)
++++..+...+..+..+.+|....|+.+.+.++.+... ..+.....+++.++.-...+. .-+...+++.+-
T Consensus 79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L 149 (403)
T PRK15132 79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence 99999999999999999999999999999888642210 112222333333222222222 223344444433
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCccccc
Q 019094 197 AVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKS 276 (346)
Q Consensus 197 ~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~~~~ 276 (346)
+...+...+..+. ...++-+.++ ... . ++.. + -.+.++++..+||+.|+++|++.+.+++. .||
T Consensus 150 ~~~~ii~~~~~~~----~l~p~~~~~~-L~~---~-~~~~--~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~ 213 (403)
T PRK15132 150 FSAKIIFLVVMLA----LMMPHIHKVN-LLT---L-PLQQ--G--LALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRK 213 (403)
T ss_pred HHHHHHHHHHHHH----HHHHhcCHHH-Hhc---C-Cccc--c--HHHHHHHHHHHHhhCCcccHHHHHHhCcC---HHH
Confidence 3322221111111 1222111111 000 0 0000 1 26788999999999999999999999765 389
Q ss_pred hhhhHHHHHHHHHHHHHhhhhheeeccCCCC-----C-----cccccccCC-CCchHHHHHHHHHHHHHHhhhh
Q 019094 277 MKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----P-----GNFLTGFGF-YEPFWLVDFANACIAVHLIGAY 339 (346)
Q Consensus 277 ~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~-----~-----~~il~n~~~-~~~~~~~~~~~~~~~i~~~~s~ 339 (346)
.+|++..+..+..++|+..-......-+.+. + ++++..+.. .+..+...++.++..+.+.+||
T Consensus 214 ~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSF 287 (403)
T PRK15132 214 LRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSF 287 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999855444444333221 1 123333321 2345677788888888888876
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.68 E-value=3.1e-15 Score=139.43 Aligned_cols=276 Identities=12% Similarity=0.042 Sum_probs=179.3
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhH
Q 019094 42 SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC 121 (346)
Q Consensus 42 ~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~ 121 (346)
.+.+.++++|+|+|++|....+.||...++..++...+.+++...+.|.....+.. ..++.|++++.+||+++.+.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p----~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP----CEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCCHHHHHHHHcCHHHHHHH
Confidence 56888999999999999999999999888888888888899999888875332210 23899999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHHHHHHHH
Q 019094 122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 201 (346)
Q Consensus 122 ~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 201 (346)
.+...+..+..+.+|....++.+.+++...... ..+.+....+..++++-.......+.+.+++.+-+...+
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~--------~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~i 156 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGT--------APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLV 156 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888642211 111122222222223233334456666666665554433
Q ss_pred HHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhH----hhhcCCCccccch
Q 019094 202 AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ----DTLKSSPPENKSM 277 (346)
Q Consensus 202 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~----~em~~p~~~~~~~ 277 (346)
...+......+ +.-+.++ .... + .....+.+...+.+...+||.+|++++++. +|.++|+..+||.
T Consensus 157 i~l~~l~~~li----p~~~~~~-L~~~---p--~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~ 226 (397)
T TIGR00814 157 LILVLLSLYLI----PHWNGAN-LTTF---P--SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC 226 (397)
T ss_pred HHHHHHHHHHH----HHcCHHH-HhcC---C--cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH
Confidence 32222222212 1111111 0000 0 001133468899999999999999999998 3444333234889
Q ss_pred hhhHHHHHHHHHHHHHhhhhheeeccCCCC-----Ccc--cccccC-CCCchHHHHHHHHHHHHHHhhhh
Q 019094 278 KRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----PGN--FLTGFG-FYEPFWLVDFANACIAVHLIGAY 339 (346)
Q Consensus 278 ~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~-----~~~--il~n~~-~~~~~~~~~~~~~~~~i~~~~s~ 339 (346)
+|++..+..+..++|+..-+.+....+.+. ++| .+..+. ..+..+...+..++..+.+.+||
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSF 296 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSF 296 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999977766666665432 122 122111 11234555666666666666665
No 15
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.67 E-value=8.7e-15 Score=139.38 Aligned_cols=245 Identities=11% Similarity=0.019 Sum_probs=158.9
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
+++|+.+.++.+...+++|+|+|++.+|...++.|.. .+..+++.++.....+..+.|...+.|.. |. .++| ++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~-GG-~y~y---~~ 75 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQ-GG-PIAY---AG 75 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CC-hhHH---HH
Confidence 3567899999999999999999999999999888864 67888888888888899999988776543 32 3344 46
Q ss_pred HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH-HHHHHHHHHhcCCCccch
Q 019094 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l 189 (346)
+ +||+.+++..+..+...+....++.+...+++..+++.. .+ . .....+ +..+.++-+...+..+..
T Consensus 76 ~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----~~----~--~~~~~~~~~i~~~~~~ln~~gvk~~ 143 (435)
T PRK10435 76 E-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----ND----P--IPAGIACIAIVWVFTFVNMLGGTWV 143 (435)
T ss_pred H-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----CC----h--HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6 799999999998877666666666666777777665421 00 0 011111 111122222333444444
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcC
Q 019094 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS 269 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~ 269 (346)
..++.+.++..+...+..+.....+. ......++ + +......+.++..++....|+|.|.+.+....+|+||
T Consensus 144 ~~i~~i~~~~~li~~~~~~i~g~~~~-~~~~~~~~---~----~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~kn 215 (435)
T PRK10435 144 SRLTTIGLVLVLIPVVGTAIVGWHWF-DAATYAAN---W----NTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKN 215 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CHHhhccc---c----cCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC
Confidence 44444433332221111111111111 10000000 0 0011233567888999999999999999999999999
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 270 SPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 270 p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
|+ |+.||++..+..++.++|++..+......+
T Consensus 216 P~---r~iPrAi~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 216 PK---RTVPLATMLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred cc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 93 899999999999999999988776554443
No 16
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.66 E-value=1.2e-14 Score=134.79 Aligned_cols=280 Identities=10% Similarity=0.040 Sum_probs=175.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhHH
Q 019094 43 AHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCG 122 (346)
Q Consensus 43 ~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~~ 122 (346)
+.+.++++|+|+|++|-.....|..++++++++++.+++++++.+.|...+.++. ..++.+++++.+||.++.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~----~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNP----SGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC----CCCHHHHHHHHcChhHHHHHH
Confidence 7899999999999999999999999999999999999999999999987654221 348999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHHHHHHHHH
Q 019094 123 LAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFA 202 (346)
Q Consensus 123 ~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 202 (346)
+...+..+..+.+|.....+.+++++.++. +.. ..++....+++.+++....... -+.+.+++.+-+...+.
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~~~------~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~~i~ 173 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQL-GFA------PLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWPFIA 173 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcC------CccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 999999999999999888888887655321 100 1122223333333333333322 23333333332222221
Q ss_pred HHHhhhhhhhhhhcCCCCCcccccccccc--ccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCC-------Ccc
Q 019094 203 YSSIGIGLSIAKVIGDGPHATTLTGTTVG--VDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS-------PPE 273 (346)
Q Consensus 203 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p-------~~~ 273 (346)
..+... ....+.-..+.- ...+.+ ++..........+.++|..++||..|+++|++...+|+. +..
T Consensus 174 ~l~~l~----~~LiP~w~~~~L-~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a 248 (443)
T PRK13629 174 SLVLIS----LSLIPYWNSAVI-DQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFT 248 (443)
T ss_pred HHHHHH----HHHHHHcCHHHH-hcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchH
Confidence 111111 112221111100 000000 000000111246788999999999999999999985333 211
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhheeeccCCCC-------Cccccccc----CCC-Cc-----hHHHHHHHHHHHHHHh
Q 019094 274 NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-------PGNFLTGF----GFY-EP-----FWLVDFANACIAVHLI 336 (346)
Q Consensus 274 ~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~-------~~~il~n~----~~~-~~-----~~~~~~~~~~~~i~~~ 336 (346)
.||.+|++..+..+..++|+..-+.+....+++. +.+++..+ +.+ +. .++..+..++..+.+.
T Consensus 249 ~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~ 328 (443)
T PRK13629 249 ERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIF 328 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHH
Confidence 4899999999999999999866665555555332 12222222 210 11 3456666666667777
Q ss_pred hhh
Q 019094 337 GAY 339 (346)
Q Consensus 337 ~s~ 339 (346)
+||
T Consensus 329 TSF 331 (443)
T PRK13629 329 KSF 331 (443)
T ss_pred HHH
Confidence 765
No 17
>PRK15049 L-asparagine permease; Provisional
Probab=99.64 E-value=3.7e-14 Score=137.04 Aligned_cols=252 Identities=14% Similarity=0.099 Sum_probs=151.9
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~-~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
+.+|+.+.++..+..++.+||+|++..|. +.+.+|- .+++.+++.+++....+..+.|.....+. .| .....+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~-aG----g~y~y~ 98 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS-SG----SFVSYA 98 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHH
Confidence 46788899999999999999999998886 5777776 46888888999999999999998876553 33 344556
Q ss_pred HHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH-HHHHHHHHHhcCCCccc
Q 019094 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHK 188 (346)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~ 188 (346)
++.+||+.++++.|..++.............+.++..+ +. + + . ...|.. +..++++-+...+..+.
T Consensus 99 ~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~--~--~------~--~~~~~~~~~~~~l~~~iN~~gvk~ 165 (499)
T PRK15049 99 REFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA--F--G------G--VPQWVFALAALTIVGTMNMIGVKW 165 (499)
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--C--C------C--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999988765544433333344443321 10 0 0 1 112222 22222222233334444
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccc--cccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhh
Q 019094 189 LSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTV--GVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (346)
Q Consensus 189 l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e 266 (346)
...+.....+..+..++..++..+.....+.+.+....++.. +.+...+..+.+++.++...+|+|.|.+.+....+|
T Consensus 166 ~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE 245 (499)
T PRK15049 166 FAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGE 245 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444443333222221111111111111111111111011100 000011223445566677889999999999999999
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 267 m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
+|||+ |+.||++..+...+.++|+..........+
T Consensus 246 ~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 246 CKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 99994 889999999999999999876665444444
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=99.63 E-value=2.6e-14 Score=136.35 Aligned_cols=241 Identities=10% Similarity=-0.009 Sum_probs=156.2
Q ss_pred CcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
++|+.+.++.+...+++++|+|++.+|..+++.|. .+++.+++.+++....+..+.|...+.+. .|. .+.| +++
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~GG-~y~y---~~~ 77 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK-SGG-MGGY---AEY 77 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCc-hHHH---HHH
Confidence 46788999999999999999999999988888886 57888899999999999999998766543 332 2344 578
Q ss_pred HcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHH-HHHHHHhcCCCccchh
Q 019094 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFA-CIQIVLSQIPNFHKLS 190 (346)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~-~~~~pl~~~~~l~~l~ 190 (346)
.+||+.+++..|..++........+.....+++..+++. . ..+...+.+... ++.+-....+..+...
T Consensus 78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~-----~------~~~~~~~~~~~~~l~~~~~ln~~g~~~~~ 146 (438)
T PRK10655 78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA-----T------LSPVQICLATIGVLWLCTVANFGGARITG 146 (438)
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----c------cchHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 899999999999988777766666555556666665531 0 000111222111 1222223334444444
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCC
Q 019094 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (346)
Q Consensus 191 ~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p 270 (346)
.++.+.+...+..+++++....... ...... +++ ++ .....+.++..++....|+|.|.+.+..+.+|+|||
T Consensus 147 ~i~~i~~~~~l~~l~~~~i~~~~~~-~~~~~~---~~~--~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P 218 (438)
T PRK10655 147 QISSVTVWGVIIPVVGLSIIGWFWF-SPSLYV---AAW--NP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENP 218 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-Cccccc---CCc--Cc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCc
Confidence 4444444333322222222212111 111111 110 01 111123456777888999999999999999999999
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhhhhee
Q 019094 271 PPENKSMKRATAVGVTTTTLFYIMCGVMGY 300 (346)
Q Consensus 271 ~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy 300 (346)
+ |+.||++..+..++.++|++......
T Consensus 219 ~---r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 219 E---RNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred c---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 89999999999999999998765443
No 19
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.62 E-value=4.9e-15 Score=137.55 Aligned_cols=253 Identities=14% Similarity=0.173 Sum_probs=172.9
Q ss_pred ccCCCcccccHHHHHHHHHHHhhhhhhhHHHHHH-HHhC-hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccH
Q 019094 28 DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAI-AQLG-WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY 105 (346)
Q Consensus 28 ~~~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~-~~~G-~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y 105 (346)
|+.+.+||.+.+.++..+++.++|+|++..|.+. +++| ...+++.++++++++...+.+-+|.....+. .|. .+.|
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk-sGg-d~ay 83 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK-SGG-DYAY 83 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCc-chhh
Confidence 3445678999999999999999999999999875 5554 6778889999999999999999998876543 333 2344
Q ss_pred HHHHHHHcCCcchhhHHHHHHHHHHhHH-HHHHHhhhhh-hHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcC
Q 019094 106 MDVVRASLGGRSVQLCGLAQYGNLIGVT-IGYTITASIS-MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (346)
Q Consensus 106 ~~i~~~~~G~~~~~i~~~~~~~~~~g~~-~~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 183 (346)
- .++|||..++...|.-.+...... ..+.+.++++ +++.++. |..++ ...-..+..++-+...
T Consensus 84 i---~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-----------c~~p~-~~~~lla~~~l~~lt~ 148 (479)
T KOG1287|consen 84 I---SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-----------CDVPR-VASKLLAAALLVLLTL 148 (479)
T ss_pred H---HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-----------CCCch-HHHHHHHHHHHHHHHH
Confidence 3 566999988888887666666544 7788888887 6666641 22222 2223333333334445
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhh---hhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhH
Q 019094 184 PNFHKLSWLSILAAVMSFAYSSIGI---GLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVL 260 (346)
Q Consensus 184 ~~l~~l~~~s~~~~~~~~~~~i~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i 260 (346)
.|...+++.+.+..+++..-+++.. +..++....+...+...+.+. + ...+.-++..++....|||.|++.+
T Consensus 149 ~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~-g----~~~~~g~i~lafysglfa~~GWd~l 223 (479)
T KOG1287|consen 149 INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE-G----SDTDVGNIALAFYSGLFAFSGWDYL 223 (479)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc-c----CcCchHHHHHHHHHhhhcccCchhh
Confidence 5666667777777666665333322 222222222221111100010 1 1122235668889999999999999
Q ss_pred HHhHhhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccCC
Q 019094 261 VEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 305 (346)
Q Consensus 261 ~~i~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~ 305 (346)
-.+.+|+||| +|++|+++.+++.+++++|+++-+..+.+-..
T Consensus 224 N~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~ 265 (479)
T KOG1287|consen 224 NYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSP 265 (479)
T ss_pred ccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCH
Confidence 9999999999 49999999999999999999998887776643
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.62 E-value=7.3e-14 Score=133.51 Aligned_cols=245 Identities=11% Similarity=0.032 Sum_probs=156.3
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
.+++|+.+.++.+...+++++|+|++.+|...+..|. ..+..+++.++.....+..+.|.....|. .|. .+.| +
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG-~y~~---~ 77 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPS-PGG-SYAY---A 77 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCC-hhHH---H
Confidence 3567889999999999999999999999998887774 35677777788888888888998776553 332 3344 6
Q ss_pred HHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchh-HH--HHHHHHHHhcCCCc
Q 019094 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-II--FACIQIVLSQIPNF 186 (346)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-ii--~~~~~~pl~~~~~l 186 (346)
++.+||+.++++.+..++.......+......++...+.+. ....... ++ ..++++-....+..
T Consensus 78 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ln~~gv 144 (445)
T PRK10644 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-------------LKDPLVLTITCVVVLWIFVLLNIVGP 144 (445)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cCCcHHHHHHHHHHHHHHHHHHHhch
Confidence 88899999999999888776655555555555565555431 0111111 11 11122222233444
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhh
Q 019094 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (346)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e 266 (346)
+....++.+.+...+..++..+...+.. ....... ++. +......+.++..++....|+|.|.+....+.+|
T Consensus 145 k~~~~i~~i~~~~~~i~l~~~~~~~~~~-~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE 216 (445)
T PRK10644 145 KMITRVQAVATVLALIPIVGIAVFGWFW-FRGETYM---AAW----NVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGV 216 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcc---CCc----cccccchHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555555544433332111111111111 1111111 100 0001122335667788899999999999999999
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 267 m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
+|||+ |+.+|++..+..++.++|.+..+......+
T Consensus 217 ~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 217 VKNPK---RNVPIATIGGVLIAAVCYVLSSTAIMGMIP 251 (445)
T ss_pred hhCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99994 899999999999999999988776444333
No 21
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.62 E-value=1.7e-13 Score=131.79 Aligned_cols=252 Identities=12% Similarity=0.075 Sum_probs=157.3
Q ss_pred cccCCCcccccHHHHHHHHHHHhhhhhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccH
Q 019094 27 DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY 105 (346)
Q Consensus 27 ~~~~~~~~~~s~~~~~~~li~~~iG~Gil~lP~-~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y 105 (346)
.++.+.+|+.+.++.....++.+||+|++..|. +++.+|. ..+..+++.+++....+..+.|.....++ ..++
T Consensus 13 ~~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-----~~~~ 86 (469)
T PRK11049 13 PAEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE-----YKSF 86 (469)
T ss_pred ccchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcH
Confidence 334457889999999999999999999998774 6888887 46777888888888888888887643222 1245
Q ss_pred HHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCC
Q 019094 106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (346)
Q Consensus 106 ~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (346)
.+.+++.+||..++++.|..++.......+.....+.+++.+.+. .+ .+...+..++++-+...+.
T Consensus 87 ~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~-~~~~~~~~~~~~~~iN~~g 152 (469)
T PRK11049 87 SDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LS-DWVASLAVVLLLLSLNLAT 152 (469)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------Cc-HHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999998877655555566666666554431 11 1111222222222333344
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhhhhcC---CCCCc-cccccccccccCcchhhHHHHHhhhhhhhhhhccchhHH
Q 019094 186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIG---DGPHA-TTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLV 261 (346)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~ 261 (346)
.+....++.+.+...+...+++++..+..... +...+ ....+...+.+. .+..+.++..++....|+|.|.+.+.
T Consensus 153 ~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~g~~~~~~~~~~~~~af~G~e~~~ 231 (469)
T PRK11049 153 VKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGM-FPKGLSGFFAGFQIAVFAFVGIELVG 231 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCC-CcccHHHHHHHHHHHHHHHhcHHHHH
Confidence 45555555444433332222222222211111 00000 001000000001 11234468889999999999999999
Q ss_pred HhHhhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeec
Q 019094 262 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 302 (346)
Q Consensus 262 ~i~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~ 302 (346)
...+|+|||+ |++||++..+...+.++|.+........
T Consensus 232 ~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~~~ 269 (469)
T PRK11049 232 TTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIMSV 269 (469)
T ss_pred HHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 9999999993 8999999877777888888766655433
No 22
>PRK10249 phenylalanine transporter; Provisional
Probab=99.62 E-value=1.4e-13 Score=131.86 Aligned_cols=249 Identities=13% Similarity=0.022 Sum_probs=158.1
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~~-~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
+.+|+.+.++..+..++.++|+|++..|.. .+.+|. ..++.+++.+++....+..+.|...+.+. .| .+.+.+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~G----g~~~y~ 91 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SG----SFAHFA 91 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHH
Confidence 466888999999999999999999988855 666676 47888899999999999999998877553 23 345567
Q ss_pred HHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccch
Q 019094 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (346)
++.+||+.++++.+..++.............+.+++.+.+ ..+...+ .+..++++-....++.+..
T Consensus 92 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~-~~~~~~l~~~lN~~gv~~~ 157 (458)
T PRK10249 92 YKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP-------------DVPTWIW-AAAFFIIINAVNLVNVRLY 157 (458)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------cCcHHHH-HHHHHHHHHHHHHhcchhh
Confidence 8999999999999998887766666666666666655432 1111111 2222222333344455555
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcCCCC-CccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhc
Q 019094 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGP-HATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLK 268 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~ 268 (346)
+.+.....+..+..++..++..+.......+ .+...... +..+......+.++..++....|+|.|.+.+....+|+|
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNL-WRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhc-cCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 5444333322222111111111111111110 01111100 000000112344678889999999999999999999999
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhhhhheeecc
Q 019094 269 SSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAF 303 (346)
Q Consensus 269 ~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~f 303 (346)
||+ |+.||++..+...+.++|.+.........
T Consensus 237 ~P~---k~iPrai~~~~~~~~~~y~~~~~~~~~~~ 268 (458)
T PRK10249 237 DPE---KSIPKAVNQVVYRILLFYIGSLVVLLALY 268 (458)
T ss_pred CHh---hHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 993 89999999999999999987554443333
No 23
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.60 E-value=3.1e-13 Score=129.45 Aligned_cols=250 Identities=14% Similarity=0.070 Sum_probs=163.1
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhhHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP-~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i 108 (346)
.+.+|+.+..+..+..+++++|+|++..| .+++..|.. +++.+++.+++....+..+.|...+.+.. | ...+.
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~-G----g~~~~ 81 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDT-G----SFSTY 81 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C----CHHHH
Confidence 34678899999999999999999999999 557788864 78888999999999999999988765543 2 34556
Q ss_pred HHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHH-HHHHHHHhcCCCcc
Q 019094 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIF-ACIQIVLSQIPNFH 187 (346)
Q Consensus 109 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~pl~~~~~l~ 187 (346)
+++.+||+.+++..+..++.....+.+.....+.+++.+.+ .. ..+.+.. .+++.-....+..+
T Consensus 82 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~--~~~~~~~~~~~~~~~~n~~gv~ 146 (452)
T TIGR01773 82 ADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP-------------DI--PLWLFSLILTIVLTLTNLYSVK 146 (452)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------cC--cHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999888777777777777777776543 11 1222222 22222223334455
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcc--ccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHh
Q 019094 188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAT--TLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD 265 (346)
Q Consensus 188 ~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~ 265 (346)
....+.....+..+...+..++..+.......+... .........++ .+..+.++..++....|+|.|.+.+..+.+
T Consensus 147 ~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~a~~~~~~af~G~e~~~~~a~ 225 (452)
T TIGR01773 147 SYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGF-FPNGIGAVLLAILVTMFSFMGTEIVTIAAA 225 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCc-CcccHHHHHHHHHHHHHHhccHHHHhHHHH
Confidence 555554444333322111111111111111111000 00100000001 112334688899999999999999999999
Q ss_pred hhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 266 TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 266 em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
|+|||+ |+.||++..+...+.++|++..++.....+
T Consensus 226 E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 226 ESSNPI---KSITRATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred hhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 999994 899999998888899999976554444443
No 24
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.60 E-value=3.5e-13 Score=129.72 Aligned_cols=250 Identities=13% Similarity=0.054 Sum_probs=152.8
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~~-~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
+.+|+.+.++.++..++.++|+|++..|.. .+.+|-...++.+++.+++....+..+.|.....+.. | .+...+
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~a-G----G~y~y~ 85 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPET-G----AFHVYA 85 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-C----CHHHHH
Confidence 457889999999999999999999988855 5677754457788889999999999999988765533 3 234456
Q ss_pred HHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccch
Q 019094 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (346)
++.+||..++++.|..++.....+.......+..++.+.+ ..+...+.++. .+++-+...+..+..
T Consensus 86 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~~~-~~~~~~in~~gvk~~ 151 (471)
T PRK11387 86 ARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-------------QVPVWPWCLLF-CALIFGLNVVSTRFF 151 (471)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cCcHHHHHHHH-HHHHHHHHHHhHHHH
Confidence 8889999999999998887666655444444444433322 11111112212 222223333444444
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhc---CC--CCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhH
Q 019094 190 SWLSILAAVMSFAYSSIGIGLSIAKVI---GD--GPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~~v~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~ 264 (346)
..++.......+..++..++..+.... .. ....+....++ ..++. .....++..++....|+|.|.+.+....
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~~faf~G~e~~~~~a 229 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLT-AEGWF-PHGGLPILMTMVAVNFAFSGTELIGIAA 229 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccC-CCCCC-cccHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 433322222222111111111111110 00 00000000000 00111 1223467777888899999999999999
Q ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 265 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 265 ~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
+|+|||+ |+++|++..+..++.++|++..+......+
T Consensus 230 ~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 230 GETENPA---KVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999993 899999999999999999987765444444
No 25
>PRK10836 lysine transporter; Provisional
Probab=99.59 E-value=5.1e-13 Score=129.15 Aligned_cols=255 Identities=14% Similarity=0.063 Sum_probs=150.0
Q ss_pred CcccCCCcccccHHHHHHHHHHHhhhhhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCccccc
Q 019094 26 LDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYT 104 (346)
Q Consensus 26 ~~~~~~~~~~~s~~~~~~~li~~~iG~Gil~lP~-~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~ 104 (346)
..|+++.+|+.+.++.++..++++||+|++..|. +.+++|....++.+++.+++....+..+.|...+.|.. | .
T Consensus 7 ~~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~s-G----g 81 (489)
T PRK10836 7 TTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVS-G----S 81 (489)
T ss_pred cCCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C----C
Confidence 4455667889999999999999999999999996 57777865568899999999999999999988776543 3 2
Q ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhh-hhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcC
Q 019094 105 YMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASI-SMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (346)
Q Consensus 105 y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 183 (346)
....+++.+|+..++++.|..++...... +....... .++.+.+ ..+...+ ....++++.....
T Consensus 82 ~y~y~~~~~g~~~gf~~Gw~~~~~~~~~~-a~~~~a~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~lN~ 146 (489)
T PRK10836 82 FATYGQNYVEEGFGFALGWNYWYNWAVTI-AVDLVAAQLVMSWWFP-------------DTPGWIW-SALFLGVIFLLNY 146 (489)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCC-------------CCchHHH-HHHHHHHHHHHHH
Confidence 34445778999999999998776433332 22222222 2222221 0011111 1222222222333
Q ss_pred CCccchhhHHHHHHHHHHHHHH--hhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHH
Q 019094 184 PNFHKLSWLSILAAVMSFAYSS--IGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLV 261 (346)
Q Consensus 184 ~~l~~l~~~s~~~~~~~~~~~i--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~ 261 (346)
...+....+..+..+..+...+ ++++............+.....+..+ +.+....+.+++.+.....|+|.|.+.+.
T Consensus 147 ~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~faf~G~e~~~ 225 (489)
T PRK10836 147 ISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIG-DAPFAGGFAAMIGVAMIVGFSFQGTELIG 225 (489)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCC-CCCCcccHHHHHHHHHHHHHHHccHHHHH
Confidence 3444333333222222211111 11111111111111000000011000 00111223355555666679999999999
Q ss_pred HhHhhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 262 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 262 ~i~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
...+|+|||+ |++||++..++..+.++|++.........+
T Consensus 226 ~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 226 IAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999993 899999999999999999977655444443
No 26
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.59 E-value=3e-13 Score=132.18 Aligned_cols=261 Identities=10% Similarity=0.032 Sum_probs=168.6
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhhHHHHHH--HHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAI--AQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~--~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (346)
++.+|+.+.++.++..++.++|+|++.+|... ..+|.. .++.+++.++.+...+....|...+.+. .|. .+.|.
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~-sGg-~Y~y~- 99 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPK-AGS-AYLYS- 99 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCc-ceeeH-
Confidence 35678999999999999999999999998654 346754 5667778888888899999998876653 333 45665
Q ss_pred HHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCC---CcccccC-CcchhHHHHHHHHHHhcC
Q 019094 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGH---HVKCYTS-NNPLMIIFACIQIVLSQI 183 (346)
Q Consensus 108 i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~---~~~~~~~-~~~~~ii~~~~~~pl~~~ 183 (346)
+..+||..++++.|..++.....+.+....++++++.++.......... ....... ......+..++++-....
T Consensus 100 --~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~ 177 (557)
T TIGR00906 100 --YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLS 177 (557)
T ss_pred --HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHH
Confidence 6679999999999999988887777777788888877764211000000 0000010 111222222223333445
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHh
Q 019094 184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (346)
Q Consensus 184 ~~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i 263 (346)
+..+..++++.+.++..+..++++++....+.... ..... . ..+.+...+..+.+++.+.....|+|.|.+.+...
T Consensus 178 ~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~-~~~~~--~-~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~ 253 (557)
T TIGR00906 178 FGVKESAWVNKIFTAINILVLLFVIIAGFTKADVA-NWSIT--E-EKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT 253 (557)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch-hcccc--c-cccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHh
Confidence 56677776666665554433222222222222111 10000 0 00000111223457788889999999999999999
Q ss_pred HhhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeecc
Q 019094 264 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAF 303 (346)
Q Consensus 264 ~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~f 303 (346)
.+|.|||+ |++||++..+..+++++|.++.+.-....
T Consensus 254 aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l~~~v 290 (557)
T TIGR00906 254 GEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAALTLMM 290 (557)
T ss_pred HHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999993 88999999999999999998776544333
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=99.57 E-value=5.5e-13 Score=126.96 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=165.5
Q ss_pred cccccHHHHHHHHHHHhhhhhhhHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIA-QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gil~lP~~~~-~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
+|+.+.++.+...+++++|+|++.+|.... ..|. .+++.+++.+++....+..+.|..++.+...| .++| .++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg--~y~~---~~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGS--PYTY---AYE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc--ceee---HHH
Confidence 578899999999999999999999996654 4454 35667777888888888889998876653322 3455 477
Q ss_pred HcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcc--cccCCcchhHHHHHHHHHHhcCCCccch
Q 019094 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVK--CYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (346)
.+||+.+++..+..++.....+..+....++++..+++....+.+..... ..........+..++++-....+..+..
T Consensus 76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~ 155 (429)
T TIGR00909 76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES 155 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence 89999999999999988888888888888998888775311110000000 0000001122223333344455567777
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcC
Q 019094 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS 269 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~ 269 (346)
.+++.+.....+...++.+.....+. .. ++... . .+..+.++..++....|+|.|.+.+....+|+||
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~-~~----~~~~~------~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~ 223 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHF-AS----NNYTP------F-MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKN 223 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhC-cH----HhcCC------C-CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccC
Confidence 77777766655543322222222211 10 01110 0 0123346778888999999999999999999999
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhhhheeec
Q 019094 270 SPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 302 (346)
Q Consensus 270 p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~ 302 (346)
|+ |+.+|++..+..++.++|++........
T Consensus 224 p~---r~ip~ai~~~~~~~~v~Yil~~~~~~~~ 253 (429)
T TIGR00909 224 PE---RDIPKAIILSLIVVTLLYVLVAAVILGA 253 (429)
T ss_pred cc---ccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 93 8999999999999999999887655433
No 28
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.56 E-value=8.3e-13 Score=127.16 Aligned_cols=251 Identities=11% Similarity=0.041 Sum_probs=162.5
Q ss_pred cccccHHHHHHHHHHHhhhhhhhHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLG-WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G-~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
+|+.+.+++++..+++++|+|++.+|....+.| ....++.+++.+++....+..+.|..++.|.+.|. .++| +++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG-~y~y---~~~ 81 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGG-IYAY---ARE 81 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-hhhh---HHh
Confidence 578999999999999999999999999876554 33346678888888888889999988776642332 3344 588
Q ss_pred HcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH-HHHHHHHHHhcCCCccchh
Q 019094 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLS 190 (346)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l~ 190 (346)
.+||+.+++..|..++........+.....+++..+++... . ..+...+.. +..++++-....+.++...
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~--~-------~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 82 GFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG--S-------GNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred HcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--C-------CCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 89999999999998877666666676666677777665210 0 000111111 1222223334455666666
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCC
Q 019094 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (346)
Q Consensus 191 ~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p 270 (346)
.++.+.....+..++..++..+... .......+.... ..+ .....+.++..++....|+|.|.+....+.+|+||+
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~-~~~~~~~~~~~~-~~p--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~ 228 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWF-KLDLFTADFWGH-DVP--SLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CchhcccccCcc-CCC--cccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc
Confidence 6666655544432222222222211 111111110000 000 011234467788888999999999999999999993
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 271 PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 271 ~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
|+.+|++..+..++.++|++.........+
T Consensus 229 ----r~iPrai~~~~~i~~~~Yil~~~~~~~~~~ 258 (473)
T TIGR00905 229 ----SDVGKATVLGTLGALVIYILITLLSLGVLP 258 (473)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999988766444433
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.56 E-value=1.7e-12 Score=124.56 Aligned_cols=246 Identities=15% Similarity=0.072 Sum_probs=154.4
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~-~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i 108 (346)
++.+|+.+.++.++..+++++|+|++..|.. .+.+|. .+++.+++.+++....+..+.|...+.+.. | ...+.
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~-G----g~y~y 78 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAA-S----SFSRY 78 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-C----CHHHH
Confidence 3466888999999999999999999998866 566675 468888889999999999999988765532 3 23445
Q ss_pred HHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccc
Q 019094 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (346)
Q Consensus 109 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~ 188 (346)
+++.+||..++++.|..++.....+.......+.+++.+.+ ..+...+.+ ..+++......+..+.
T Consensus 79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~l~~~ln~~gv~~ 144 (457)
T PRK10580 79 AQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP-------------TVPHWIWVL-SVVLIICAVNLMSVKV 144 (457)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCChHHHHH-HHHHHHHHHHHccchh
Confidence 68889999999999998877666565555566666655443 111112222 2222333334445555
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhh--hh-hhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHh
Q 019094 189 LSWLSILAAVMSFAYSSIGIGLS--IA-KVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD 265 (346)
Q Consensus 189 l~~~s~~~~~~~~~~~i~~v~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~ 265 (346)
...+..+.++..+...++.++.. +. ....+......... .+..+...+..+.+++.++....|+|.|.+......+
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~ 223 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHN-LWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAG 223 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccc-cCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 55555443333222111111111 11 11111000000000 0000001122344777888999999999999999999
Q ss_pred hhcCCCccccchhhhHHHHHHHHHHHHHhhhhhe
Q 019094 266 TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 299 (346)
Q Consensus 266 em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~g 299 (346)
|+|||+ |+.||++..+...+.++|+......
T Consensus 224 E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 224 EAKDPE---KSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999993 8899999988888888888665443
No 30
>PRK11021 putative transporter; Provisional
Probab=99.56 E-value=6e-13 Score=125.92 Aligned_cols=229 Identities=14% Similarity=0.096 Sum_probs=147.2
Q ss_pred cHHHHHHHHHHHhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCC
Q 019094 37 TWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (346)
Q Consensus 37 s~~~~~~~li~~~iG~Gil~lP~~-~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~ 115 (346)
++++++...+++|+|+|++.+|.. .+.+|- .+++.+++.+++....+..+.|...+.|...| .+.| +++.+||
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG--~y~y---~~~~~G~ 75 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAGG--PAHF---VGMAFGP 75 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--HHHh---HHHHhCc
Confidence 578999999999999999999976 455564 57888899999999999999998877664332 3344 5788999
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHH
Q 019094 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSIL 195 (346)
Q Consensus 116 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~ 195 (346)
+.+++..+..+........+.......++..+++. + .. ......+..++++-+...+..+...+++.+
T Consensus 76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~-~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~ 143 (410)
T PRK11021 76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----S------SW-QLLLAELLTLALLWLLNLRGASSSANLQTV 143 (410)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----C------Cc-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999887654444444444455555554431 0 00 111111222222333344445555554444
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCcccc
Q 019094 196 AAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENK 275 (346)
Q Consensus 196 ~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~~~ 275 (346)
..+..+ .++...+.. .+.. ..+. .+ +.....++.++..++....|+|.|.+.+....+|+|||+ |
T Consensus 144 ~~~~~~----~i~~~~~~~--~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k 208 (410)
T PRK11021 144 IALLIV----ALVVAIWWA--GDIK-PADI---PF--PAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---R 208 (410)
T ss_pred HHHHHH----HHHHHHHHH--cCCc-hhcC---CC--CCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---c
Confidence 332221 111111111 1110 0010 00 001123455778889999999999999999999999994 8
Q ss_pred chhhhHHHHHHHHHHHHHhhhhh
Q 019094 276 SMKRATAVGVTTTTLFYIMCGVM 298 (346)
Q Consensus 276 ~~~~~~~~s~~~~~~~y~~~~~~ 298 (346)
++||++..+..++.++|++..+.
T Consensus 209 ~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 209 DFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 31
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.56 E-value=8.2e-13 Score=127.48 Aligned_cols=249 Identities=15% Similarity=0.050 Sum_probs=159.3
Q ss_pred cccccHHHHHHHHHHHhhhhhhhHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gil~lP-~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
+|+.+..+..+..++.++|+|++..| .+.+.+|....+..+++.+++....+..+.|.....+...| .|...+++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG----~~~~~~~~ 76 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG----SFATYASR 76 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHH
Confidence 36778899999999999999999866 55777775444777888889999999999998876653322 46677889
Q ss_pred HcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhh
Q 019094 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW 191 (346)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~ 191 (346)
.+||..++++.+..++.....+.+.....+.++..+.+ ..+...+..+ ..+++-+...+..+....
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAI-FYVFIVIINLFGVKGYGE 142 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHH-HHHHHHHHHHhcchHHHH
Confidence 99999999999999888877777777777776654322 1111222222 222222334445555555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccc--cccccccccCcch---hhHHHHHhhhhhhhhhhccchhHHHhHhh
Q 019094 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATT--LTGTTVGVDVSAS---EKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (346)
Q Consensus 192 ~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~fsf~~~~~i~~i~~e 266 (346)
++.+.....+...+..++..+.....+.+.+.. ........++.+. ..+.++..++....|+|.|.+....+.+|
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 554443322221111111111111111110000 0000000011111 12557788888999999999999999999
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhhhheeec
Q 019094 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 302 (346)
Q Consensus 267 m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~ 302 (346)
+|||+ |++||++..+..++.++|.+..+.....
T Consensus 223 ~knP~---r~iPrai~~~~~~~~~~Y~l~~~~~~~~ 255 (478)
T TIGR00913 223 AANPR---KSIPRAAKRTFWRILVFYILTLFLIGFL 255 (478)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 99993 8999999999999999999876543333
No 32
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.55 E-value=2.6e-13 Score=126.19 Aligned_cols=237 Identities=14% Similarity=0.095 Sum_probs=165.7
Q ss_pred cccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcC
Q 019094 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (346)
Q Consensus 35 ~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G 114 (346)
|.|..|.++.++++++|+|++.+|...++.+--.+++..++.+++....+.++.+..++.+. .+..+..++.+|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~------~~~~~~~~~~~G 75 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE------KNFSEILSKYLG 75 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHhh
Confidence 57888999999999999999999999877665667888888999999999999998877652 268888999999
Q ss_pred CcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH-HHHHHHHHHhcCCCccchhhHH
Q 019094 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLSWLS 193 (346)
Q Consensus 115 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l~~~s 193 (346)
|+.+++..+...++....+.......++.++...- .++..+.+ +..+++.-....+.++....++
T Consensus 76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~ 141 (359)
T TIGR00912 76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL--------------PRTPIIVIIILIIIVSIYIVRKGIEVLLRTA 141 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 99999999988888877777777777777765431 11222322 2233333333445677777777
Q ss_pred HHHHHHHHHHH-HhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhh-hhhhhhccchhHHHhHhhhcCCC
Q 019094 194 ILAAVMSFAYS-SIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIG-DVAFAYAFSTVLVEIQDTLKSSP 271 (346)
Q Consensus 194 ~~~~~~~~~~~-i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fsf~~~~~i~~i~~em~~p~ 271 (346)
.+.....+... ++.... .....+.++-.|-. +.++.+...+.. ...++|.+...+..+.+++|+|
T Consensus 142 ~i~~~~~i~~~~~il~~~----~~~~~~~~~l~P~~--------~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~- 208 (359)
T TIGR00912 142 EILLIIFLILFILVLILL----APKLGNIKNLLPVL--------ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK- 208 (359)
T ss_pred HHHHHHHHHHHHHHHHHH----hcccccHHHccCcc--------ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-
Confidence 76665544321 111111 11111111111110 112334444443 7789999999999999999998
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhhhheeeccCCCC
Q 019094 272 PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 307 (346)
Q Consensus 272 ~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~ 307 (346)
||.+|+...+..++.++|....+.....+|.+.
T Consensus 209 ---~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 209 ---KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 889999999999999999988888888888543
No 33
>PRK10746 putative transport protein YifK; Provisional
Probab=99.55 E-value=1.6e-12 Score=124.53 Aligned_cols=251 Identities=11% Similarity=0.036 Sum_probs=157.7
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhhHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP-~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i 108 (346)
++.+|+.+..+..+..++.+||+|++..| .+.+.+|. ..++.+++.+++.+..+..+.|.....+ +.| .+.+.
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P-~sG----g~~~y 79 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEP-VTG----SFAVY 79 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC----CHHHH
Confidence 34668889999999999999999999877 45777886 4677888889998999999999876654 333 45666
Q ss_pred HHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccc
Q 019094 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (346)
Q Consensus 109 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~ 188 (346)
+++.+||..++++.+..++.......+.....+.+++.+.+ ..+...+..+. ++++.....+..+.
T Consensus 80 ~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p-------------~~~~~~~~~~~-~~~~~~lN~~gv~~ 145 (461)
T PRK10746 80 AHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP-------------EMAQWIPALIA-VALVALANLAAVRL 145 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------------CCchHHHHHHH-HHHHHHHHHHhHHH
Confidence 78899999999999999888777766666677777665543 11111222222 22222223333343
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhh-hcCCCCCcccccccc-ccccC-cchhhHHHHHhhhhhhhhhhccchhHHHhHh
Q 019094 189 LSWLSILAAVMSFAYSSIGIGLSIAK-VIGDGPHATTLTGTT-VGVDV-SASEKVWRAFQAIGDVAFAYAFSTVLVEIQD 265 (346)
Q Consensus 189 l~~~s~~~~~~~~~~~i~~v~~~~~~-~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~ 265 (346)
...+........+...+..++..+.. .......++. .+++ +.++. .....+.++..++....|+|.|.+.+....+
T Consensus 146 ~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~ 224 (461)
T PRK10746 146 YGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQS-IGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAG 224 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33333222221111111111111100 0111100000 0110 00000 1122355778899999999999999999999
Q ss_pred hhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 266 TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 266 em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
|+||| ||++||++..+...+.++|++..+......+
T Consensus 225 E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p 260 (461)
T PRK10746 225 EAKNP---QVTLRSAVGKVLWRILIFYVGAIFVIVTIFP 260 (461)
T ss_pred HhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeeeC
Confidence 99999 4999999999999999999876555444444
No 34
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.54 E-value=1.6e-12 Score=124.58 Aligned_cols=241 Identities=11% Similarity=0.027 Sum_probs=154.0
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~~-~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
+.+|+.+.++..+..++.+||+|++..|.. .+++|. ..++.+++.+++....+..+.|...+.+.. | .+.+.+
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~a-G----g~y~~~ 82 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVA-G----SFSHFA 82 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C----CHHHHH
Confidence 467888999999999999999999988865 566665 567788888999999999999987765532 3 345556
Q ss_pred HHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccch
Q 019094 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (346)
++.+||..++++.+..++.....+.+....++++++.+.+ ..+...+..+ .+++.-.......+..
T Consensus 83 ~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~i-~~~~~~~lN~~gv~~~ 148 (456)
T PRK10238 83 YKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-------------EIPTWVSAAV-FFVVINAINLTNVKVF 148 (456)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------cCcHHHHHHH-HHHHHHHHHHHhHHHH
Confidence 7889999999999999999888888887778887766543 1111112221 1222222233344444
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcCC-CCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhc
Q 019094 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGD-GPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLK 268 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~ 268 (346)
..++.+..+..+...+++++..+...... ...+..........++. +..+.++..++....|+|.|.+.+....+|+|
T Consensus 149 ~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 149 GEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 44444443333322222111111111111 11011111100000111 12234566777889999999999999999999
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhh
Q 019094 269 SSPPENKSMKRATAVGVTTTTLFYIMC 295 (346)
Q Consensus 269 ~p~~~~~~~~~~~~~s~~~~~~~y~~~ 295 (346)
||+ |+.||++..+...+.+.|...
T Consensus 228 nP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 228 NPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred Chh---hHHHHHHHHHHHHHHHHHHHH
Confidence 994 899999998888888888754
No 35
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.52 E-value=2.1e-12 Score=124.26 Aligned_cols=251 Identities=11% Similarity=0.080 Sum_probs=158.3
Q ss_pred ccccHHHHHHHHHHHhhhhhhhHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHH
Q 019094 34 RTGTWVTASAHIITAVIGSGVLSLAWAIA-QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (346)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~Gil~lP~~~~-~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~ 112 (346)
|+.+.++.+...++++||+|++.+|.... .+|....++.+++.++.....+..+.|...+.|...|. .+.| +++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG-~y~y---~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGG-VYSY---AKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-hhhh---HHhH
Confidence 57789999999999999999999998754 55544456678888888888999999988776543322 3455 6888
Q ss_pred cCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH--HHHHHHHHHhcCCCccchh
Q 019094 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI--IFACIQIVLSQIPNFHKLS 190 (346)
Q Consensus 113 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i--i~~~~~~pl~~~~~l~~l~ 190 (346)
+||+.+++..|..++........+.......+..+++... ..++....+ +..++.+-....+..+...
T Consensus 77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~ 146 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG----------GGNNPPSIIGASVLLWCVHFLVLRGVEGAA 146 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999887766666666666666655544210 001111111 1122222333345566556
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCC
Q 019094 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (346)
Q Consensus 191 ~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p 270 (346)
.++.+.++..+..+++.++..+... .......+..+.. ..+......+.++..++....|+|.|.+....+.+|.||+
T Consensus 147 ~i~~i~~~~ki~~l~~~ii~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~ 224 (468)
T TIGR03810 147 FINTITTIAKLVPLFVFIVIGIFAF-KGDTFTNDFWGNA-NGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR 224 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cHhhcCccccccc-cccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc
Confidence 6555554443332222222111111 1111111000000 0000111123355678888999999999999999999986
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 271 PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 271 ~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
|+.+|++..+...+.++|.++.+..+...+
T Consensus 225 ----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 225 ----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999988877665544
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.51 E-value=1.3e-12 Score=126.86 Aligned_cols=253 Identities=11% Similarity=0.103 Sum_probs=153.2
Q ss_pred cCCCcccccHHHHHHHHHHHhhhhhhhHHHHH-HHHhChh-HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHH
Q 019094 29 DGRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWV-AGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM 106 (346)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~-~~~~G~~-~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~ 106 (346)
+++.+|+.+.++.+...+++++|+|++..|.. .+++|-. ..++.+++.+++....+..+.|.....+.. |. .+.|
T Consensus 37 ~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~s-GG-~y~~- 113 (501)
T TIGR00911 37 AVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKS-GG-EYNY- 113 (501)
T ss_pred ccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-Cc-hhhh-
Confidence 34567889999999999999999999998865 5556633 234566778888888889999988776533 32 3344
Q ss_pred HHHHHHcCCcchhhHHHHHHHH-HHhHHHHHHHhhhhhhHH-HHhhcccccCCCCcccccCCcc--hhHHHHHHHHHHhc
Q 019094 107 DVVRASLGGRSVQLCGLAQYGN-LIGVTIGYTITASISMVA-VKRSNCFHRHGHHVKCYTSNNP--LMIIFACIQIVLSQ 182 (346)
Q Consensus 107 ~i~~~~~G~~~~~i~~~~~~~~-~~g~~~~y~i~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~--~~ii~~~~~~pl~~ 182 (346)
.++.+||+.+++..|..++. ..+.+..+....++++.. +.+. . ..+... ...+..++++-...
T Consensus 114 --~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~------~-----~~~~~~~~~i~~~~i~~~~~ln 180 (501)
T TIGR00911 114 --ILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD------C-----EVPEWAIRLVAVLCVLLLTLVN 180 (501)
T ss_pred --HHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------C-----CCchHHHHHHHHHHHHHHHHHH
Confidence 46689999999888865542 233444455555555422 2221 0 011111 11111222223333
Q ss_pred CCCccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHH
Q 019094 183 IPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 262 (346)
Q Consensus 183 ~~~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~ 262 (346)
.+..+...+++.+.....+..+++.++..+.....+...+.+... .+. ....+..++..++....|+|.|.+.+..
T Consensus 181 ~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-~f~---~~~~~~~~~~~a~~~~~~af~G~e~~~~ 256 (501)
T TIGR00911 181 CLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKN-AFE---GTETSAGGIVLAFYSGIWAYGGWNYLNF 256 (501)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc-ccC---CCCCcHHHHHHHHHHHHHHHHhHHHHhh
Confidence 445555555555554444432222222222222111111100000 000 0012345777888999999999999999
Q ss_pred hHhhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 263 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 263 i~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
+.+|+|||+ |+.||++..+..++.++|++..+......+
T Consensus 257 ~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 257 VTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred hHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999994 899999999999999999988655443333
No 37
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.50 E-value=1.3e-12 Score=133.74 Aligned_cols=257 Identities=14% Similarity=0.083 Sum_probs=162.0
Q ss_pred CCcccccHHHHHHHH-HHHhhhhhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHH
Q 019094 31 RAKRTGTWVTASAHI-ITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (346)
Q Consensus 31 ~~~~~~s~~~~~~~l-i~~~iG~Gil~-lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i 108 (346)
++.++.+++.+++.- +.+++|+|++. +++...++|...+++.+++.++++..++..+.+......++.|. .|.|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG-~Y~y--- 148 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG-AYYL--- 148 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH-HHHH---
Confidence 345678888999988 99999999975 66888899988889999999999999999999988763444443 2333
Q ss_pred HHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccc
Q 019094 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (346)
Q Consensus 109 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~ 188 (346)
.+..+|+..++.+.+..++.....+..|.+.+++++..+++..+.... . . ..+......+..++++.+... ..
T Consensus 149 isralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~--~-~-~~~~~~iia~i~l~ll~~In~---~G 221 (953)
T TIGR00930 149 ISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIM--V-D-PINDIRIYGTVTVVVLLGISF---AG 221 (953)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--c-C-ccccchHHHHHHHHHHHHHHH---hh
Confidence 477799999999999999999999999999999999888753211000 0 0 001111111122222222223 33
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhcCCC-CCcccccccc---ccccCcc-hhhHH-HHHhhhhhhhhhhccchhHHH
Q 019094 189 LSWLSILAAVMSFAYSSIGIGLSIAKVIGDG-PHATTLTGTT---VGVDVSA-SEKVW-RAFQAIGDVAFAYAFSTVLVE 262 (346)
Q Consensus 189 l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~~~~~fsf~~~~~i~~ 262 (346)
.++.+.+..+++++.++.++...+....... .......++. +..+..+ ..... ++...++++.+||.|......
T Consensus 222 vk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan 301 (953)
T TIGR00930 222 MEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGAN 301 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433311111111111011100 0000000000 0000000 00111 256677778889999999999
Q ss_pred hHhhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheee
Q 019094 263 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 301 (346)
Q Consensus 263 i~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~ 301 (346)
+.+|+|||+ |++|+++..++.+++++|+++.++...
T Consensus 302 ~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~~~~ 337 (953)
T TIGR00930 302 ISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVLFGA 337 (953)
T ss_pred HHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999994 899999999999999999988764333
No 38
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.49 E-value=3e-12 Score=122.40 Aligned_cols=245 Identities=13% Similarity=0.103 Sum_probs=154.2
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhhHHHHHH-HHhCh-hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAI-AQLGW-VAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~-~~~G~-~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (346)
++.+|+.+.++.+...++.++|+|++..|... +..|- ...++.+++.+++....+....|.....+...| .+.|.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG--~y~y~- 80 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA--DYVYL- 80 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--ceeeH-
Confidence 34678899999999999999999999988764 45563 345677788888889999999998877654433 45664
Q ss_pred HHHHHcCCcchhhHHHHHHH-HHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCc
Q 019094 108 VVRASLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNF 186 (346)
Q Consensus 108 i~~~~~G~~~~~i~~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l 186 (346)
++.+||..+++..+.... ........+....++++..+.+. + .. ......+..++.+-....+..
T Consensus 81 --~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--------~---~~-~~~~~~~~~~~~~~~ln~~gv 146 (445)
T PRK11357 81 --KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI--------D---PL-LGKFIAAGLIIAFMLLHLRSV 146 (445)
T ss_pred --HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------c---hH-HHHHHHHHHHHHHHHHHHhhh
Confidence 677999999999997443 33344445666666666543320 0 00 001111122222223334555
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhh
Q 019094 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (346)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e 266 (346)
+....++.+..+..+..++++++..+... .....+...+. +......+.++..++....|+|.|.+....+.+|
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~ii~g~~~~-~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E 220 (445)
T PRK11357 147 EGGAAFQTLITIAKIIPFTIVIGLGIFWF-KAENFAAPTTT-----AIGATGSFMALLAGISATSWSYTGMASICYMTGE 220 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc-----cccccchHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 55555555555444332222222212111 11111111000 0011122446778888999999999999999999
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhhhhee
Q 019094 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 300 (346)
Q Consensus 267 m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy 300 (346)
+|||+ |+++|++..+..++.++|++......
T Consensus 221 ~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 221 IKNPG---KTMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred hcCcc---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99994 89999999999999999998766543
No 39
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.47 E-value=6.7e-12 Score=115.12 Aligned_cols=255 Identities=16% Similarity=0.174 Sum_probs=179.1
Q ss_pred ccCCCcccccHHHHHHHHHHHhhhhhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHH
Q 019094 28 DDGRAKRTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM 106 (346)
Q Consensus 28 ~~~~~~~~~s~~~~~~~li~~~iG~Gil-~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~ 106 (346)
++++.+|..+..+-.+.-++..||+|.+ +-..+.+.+|... ++..+++|++.+.-++.+.|...+.+ . ..+|.
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~~p-~----~gSF~ 80 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVANP-V----SGSFS 80 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHhCC-C----CCcHH
Confidence 3455678888899999999999999984 6888899999553 56667788899999999999776543 2 33899
Q ss_pred HHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHH--HHHHhcCC
Q 019094 107 DVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI--QIVLSQIP 184 (346)
Q Consensus 107 ~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~--~~pl~~~~ 184 (346)
+.+++.+|++++++.+|..+......+++-+..++.+++.++| ..+++.+.++..++ ..=+...|
T Consensus 81 ~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP-------------~vP~Wv~al~~~~l~~~~NL~sVk 147 (462)
T COG1113 81 DYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP-------------DVPQWVFALAAVVLLLAVNLISVK 147 (462)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 22233333333222 33334556
Q ss_pred Cccchh-hHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHh
Q 019094 185 NFHKLS-WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (346)
Q Consensus 185 ~l~~l~-~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i 263 (346)
.+.++. |++.+-++.++.+.++.++ .+.....++......++.. +-.--.++.+.+++.++.+.+|||.+.+.+-..
T Consensus 148 ~FGE~EfWfAlIKV~aIi~~Iv~G~~-ll~~g~~~~~~~~g~snl~-~hGGffP~G~~g~~~~~~~v~Faf~GiElvGit 225 (462)
T COG1113 148 VFGELEFWFALIKVAAIIAFIVVGIV-LLFGGFGGGGGAAGFSNLW-DHGGFFPNGFLGFLSALQIVMFAFGGIELVGIT 225 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCCccccccc-cCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666 5555555555543222222 2333333322111111111 000113445668899999999999999999999
Q ss_pred HhhhcCCCccccchhhhHHHHHHHHHHHHH-----hhhhheeeccCCC
Q 019094 264 QDTLKSSPPENKSMKRATAVGVTTTTLFYI-----MCGVMGYLAFGND 306 (346)
Q Consensus 264 ~~em~~p~~~~~~~~~~~~~s~~~~~~~y~-----~~~~~gy~~fg~~ 306 (346)
..|-|||+ |..+|++..-..-+.++|+ ++.+..+-.++++
T Consensus 226 A~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~ 270 (462)
T COG1113 226 AAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGED 270 (462)
T ss_pred HHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCC
Confidence 99999994 7888998877777777776 4555555555543
No 40
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.46 E-value=6.4e-12 Score=120.08 Aligned_cols=242 Identities=13% Similarity=0.037 Sum_probs=154.4
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
+.+|+.+.++.....++.++|......+.+++..|+..-++..++.+++....+..+.|...+.+.. | .....++
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~-G----g~y~~~~ 78 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA-G----GGYGFAR 78 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-C----CHHHHHH
Confidence 4567889999999999999995556678888889986556666777777778788889988766543 3 2334458
Q ss_pred HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchh
Q 019094 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (346)
+.+||+.+++..+..++........+...+++++..+++. .+. +...+..++++-+...+..+...
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~-~~~~~~~~~~~~~ln~~g~~~~~ 144 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPG-WLAALVFYIVFIGINILGVGEAA 144 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------Cch-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998888888888888888888877641 111 11122222222233333444444
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCC
Q 019094 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (346)
Q Consensus 191 ~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p 270 (346)
.++.+..+..+..+++.++. ........+..++...+.+...+..+.+++.++....|+|.|++.+..+.+|+|||
T Consensus 145 ~i~~~~~~~~~~~l~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P 220 (442)
T TIGR00908 145 KLEFVVTAVAIIALGVFIGA----MVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP 220 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 44443333222111111111 11110000000000000001112234477788888899999999999999999999
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhhhh
Q 019094 271 PPENKSMKRATAVGVTTTTLFYIMCGVM 298 (346)
Q Consensus 271 ~~~~~~~~~~~~~s~~~~~~~y~~~~~~ 298 (346)
+ |+.+|++..+..++.++|..+.+.
T Consensus 221 ~---r~iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 221 K---RDIPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred c---cccCHHHHHHHHHHHHHHHHHHHH
Confidence 4 899999999999999988866443
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.41 E-value=4.6e-11 Score=114.17 Aligned_cols=230 Identities=13% Similarity=0.081 Sum_probs=144.1
Q ss_pred HHHHhhhhhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhHHH
Q 019094 45 IITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGL 123 (346)
Q Consensus 45 li~~~iG~Gil~lP~-~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~~~ 123 (346)
.++++||+|++..|. +++++|. .+++.+++.+++....+..+.|...+.+.. | ...+.+++.+||+.++++.+
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~-G----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDT-G----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-C----CHHHHHHHHcChHHHHHHHH
Confidence 357899999998886 6888886 488899999999999999999988765532 3 34555689999999999999
Q ss_pred HHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH-HHHHHHHHHhcCCCccchhhHHHHHHHHHHH
Q 019094 124 AQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLSWLSILAAVMSFA 202 (346)
Q Consensus 124 ~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 202 (346)
..++.............+..++.+.+ .. ..+.+ +..++++-+...+..+....++.+.++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~ 141 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVP-------------GI--PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVI 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------------cC--cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence 99887666555554444444443321 11 11222 2222222233344455555544444443333
Q ss_pred HHHhhhhhhhhhhcCCCCCccccccc-c-ccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCccccchhhh
Q 019094 203 YSSIGIGLSIAKVIGDGPHATTLTGT-T-VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRA 280 (346)
Q Consensus 203 ~~i~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~~~~~~~~ 280 (346)
..+..++..+.......+.. ...+. + ++.+...+..+.++..++....|+|.|.+.+....+|+||| ||+++|+
T Consensus 142 ~li~~ii~~~~~~~g~~~~~-~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPra 217 (446)
T PRK10197 142 AILAFIFLGAVAISGFYPYA-EVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRA 217 (446)
T ss_pred HHHHHHHHHHHHhcCCCCCC-CCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHH
Confidence 22222222121111111000 00010 0 00000112234578899999999999999999999999999 3899999
Q ss_pred HHHHHHHHHHHHHhhhhhe
Q 019094 281 TAVGVTTTTLFYIMCGVMG 299 (346)
Q Consensus 281 ~~~s~~~~~~~y~~~~~~g 299 (346)
+..+...+.++|++..+..
T Consensus 218 i~~~~~~i~i~Yil~~~~~ 236 (446)
T PRK10197 218 TNSVIWRISIFYLCSIFVV 236 (446)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999765553
No 42
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.38 E-value=5.6e-11 Score=111.38 Aligned_cols=240 Identities=16% Similarity=0.123 Sum_probs=181.0
Q ss_pred CcccccHHHHHHHHHHHhhhhhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 32 AKRTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~Gil-~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
.+|+.+..+-.+.-++..||+|.+ +...+++++|....++..++++...+..+..+.|..-..| ..| +|...+.
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG----sF~~ya~ 116 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG----SFSTYAT 116 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----chhhhhh
Confidence 568888999999999999999995 7999999999999999999999999999999999887766 433 5888889
Q ss_pred HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHh--cCCCccc
Q 019094 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS--QIPNFHK 188 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~--~~~~l~~ 188 (346)
+.-+|-.++.+.|..++.....+..-+...+..++.+.+. ..+...|..++.++++.+- -.|...+
T Consensus 117 rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE 184 (541)
T COG0833 117 RFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFGE 184 (541)
T ss_pred hhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccce
Confidence 9999999999999999999999999999999999888752 2345667776655554443 3456666
Q ss_pred hh-hHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccccccc-ccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhh
Q 019094 189 LS-WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT-VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (346)
Q Consensus 189 l~-~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e 266 (346)
.- ++|.+-++.++.+.+..++ +..+ +.+.+... +.+ +..+-.....+.++...+-+..|||.|.+.+--...|
T Consensus 185 ~Efw~s~iKV~~ii~Fii~gii--~~~G--g~~~~~~i-g~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE 259 (541)
T COG0833 185 TEFWFSSIKVLTIIGFIILGII--IICG--GGPTHGYI-GFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGE 259 (541)
T ss_pred ehHHHHHHHHHHHHHHHHHHHH--HhcC--CCCCCCCc-ceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecc
Confidence 65 5666666655544333222 2222 21112221 221 1112223445678888888999999999999999999
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhh
Q 019094 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCG 296 (346)
Q Consensus 267 m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~ 296 (346)
-+||+ |.+||++.-.+--+.++|++.-
T Consensus 260 s~nP~---K~iPkAik~vfwRIl~FYi~si 286 (541)
T COG0833 260 SENPR---KSIPKAIKQVFWRILLFYILSI 286 (541)
T ss_pred cCCch---hhhHHHHHHHHHHHHHHHHHHH
Confidence 99994 8999999999999999998433
No 43
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.33 E-value=1.2e-10 Score=106.61 Aligned_cols=236 Identities=11% Similarity=0.065 Sum_probs=169.2
Q ss_pred cccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcC
Q 019094 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (346)
Q Consensus 35 ~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G 114 (346)
|.|..|.+..++.+++|+|++.+|....+.+ -.|++..++.++.......+..+..++.+ ..+..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p------~~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFP------GKTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHhC
Confidence 4678899999999999999999999976665 25666666666777777777777776655 3489999999999
Q ss_pred CcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH-HHHHHHHHHhcCCCccchhhHH
Q 019094 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLSWLS 193 (346)
Q Consensus 115 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l~~~s 193 (346)
|+.++++.+...+..+......+...++.++...- .++..+.+ ...+++......+.++.+...+
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--------------p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~ 139 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLL--------------PETPIWVIILLFLLVAAYAARKGIEVIARVA 139 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999899999998887652 12333333 3333444444566788887766
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCcc
Q 019094 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273 (346)
Q Consensus 194 ~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~ 273 (346)
.+.....+...+.+... ..++.+.++-.|- ...++.+.+++.....+.|.+...+.-+...+|+|
T Consensus 140 ~~~~~~~~i~~~~i~~~----~~~~~~~~~l~P~--------~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~--- 204 (320)
T PF03845_consen 140 EILFPIFLILLLLILLL----SIPNIDWDNLLPV--------LESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK--- 204 (320)
T ss_pred HHHHHHHHHHHHHHHHH----hcccCCHHHeeCc--------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 65555444322222221 1122222211111 12334567777777888899998889999999998
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhheeeccCCCC
Q 019094 274 NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 307 (346)
Q Consensus 274 ~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~ 307 (346)
||..|....+..++.++|...-+.....||.+.
T Consensus 205 -~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 205 -KKLKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 888999999999999999988888888888653
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.31 E-value=3.8e-10 Score=108.54 Aligned_cols=253 Identities=13% Similarity=0.115 Sum_probs=164.8
Q ss_pred cCCCcccccHHH-HHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHH
Q 019094 29 DGRAKRTGTWVT-ASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (346)
Q Consensus 29 ~~~~~~~~s~~~-~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (346)
+++.+|+.+.++ .....++.++|.|++.+|......+ ....+.+++.+++....+....|..++.+ +.|. .+.|
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p-~~GG-~y~~-- 81 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIP-SAGG-AYAY-- 81 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC-eeee--
Confidence 344455666666 8889999999999999998887766 22333356666777777788888877544 3332 4455
Q ss_pred HHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH--HHHHHHHHHhcCCC
Q 019094 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI--IFACIQIVLSQIPN 185 (346)
Q Consensus 108 i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i--i~~~~~~pl~~~~~ 185 (346)
+++.+||+.++...+..++.......+........+..+.+... .. ..+...+.. +.....+-+...+.
T Consensus 82 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~ln~~G 152 (466)
T COG0531 82 -AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG----LL----SIGPLLIILIALALIALLTLLNLRG 152 (466)
T ss_pred -hhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----hh----cCCchHHHHHHHHHHHHHHHHHHhh
Confidence 58889999999999999999998888888888887777765210 00 000011111 12222333334455
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHh
Q 019094 186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD 265 (346)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~ 265 (346)
.+....+..+..+..+...++..+..+....... .+ ..... ......+..+..++....++|.|.+...+..+
T Consensus 153 ~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~ 225 (466)
T COG0531 153 IKASAKINSIITILKIIILLIFIILGLFAFGFSN-GN-LFAPF-----NPGGGSFGGILAAILLAFFAFTGFEAIATLAE 225 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc-cCCCc-----ccccchHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 5666665555555555433333333233332211 00 00000 00112233677888899999999999999999
Q ss_pred hhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccCC
Q 019094 266 TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 305 (346)
Q Consensus 266 em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~ 305 (346)
|+|||. |+.+|++..+..++.++|.+..+......++
T Consensus 226 E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 226 EVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 999993 7899999999999999999888877777765
No 45
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.25 E-value=1.5e-10 Score=110.12 Aligned_cols=244 Identities=14% Similarity=0.099 Sum_probs=155.2
Q ss_pred cHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCC
Q 019094 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (346)
Q Consensus 37 s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~-~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~ 115 (346)
++++.+...+++++|+|++..| .....|.. +++..++.+++. ...+....|..++.+.. | .....+++.+||
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~-G----G~y~~~~~~~g~ 74 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSA-G----GIYVWVSRAFGP 74 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSS-T----THHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCc-C----eeeehhhhcccc
Confidence 6789999999999999999999 66566654 666666666666 67778888877654433 3 334556888999
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccC-CcchhHHHHHHHHHHhcCCCccchhhHHH
Q 019094 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTS-NNPLMIIFACIQIVLSQIPNFHKLSWLSI 194 (346)
Q Consensus 116 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~pl~~~~~l~~l~~~s~ 194 (346)
+.+++..+...+........+.....+.+...+.. + ....+ ......+..++.......+..+..++++.
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP-----D----LNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----G----GTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cchhcccceeEEEeeccccccccchhhhhhhcccc-----c----cccccchheeeeecccccceEeeechhhhhhhhhh
Confidence 99999999999988888888888888877665531 0 00000 01111222333344445556667777766
Q ss_pred HHHHHHH-HHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCcc
Q 019094 195 LAAVMSF-AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273 (346)
Q Consensus 195 ~~~~~~~-~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~ 273 (346)
+..+..+ ..+++.+...+.....+..........+..++ .+...+.++....|+|.|.+....+.+|+||
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---- 216 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSGFEAIASLAEENKN---- 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS----
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhcccccccccccccccc----
Confidence 6665555 22222222222222111110000000000111 1113578888899999999999999999764
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhheeeccCCC
Q 019094 274 NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 306 (346)
Q Consensus 274 ~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~ 306 (346)
|+.+|++..+..++.++|.+.........+++
T Consensus 217 -k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 217 -KTIPRAIIISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred -hhheeecccchhHHHHHHhhhhheeeecccch
Confidence 68999999999999999999877766666543
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.24 E-value=2e-09 Score=103.81 Aligned_cols=257 Identities=10% Similarity=-0.024 Sum_probs=148.5
Q ss_pred CCCcccccHHHHHHHHHHHh-hhhhhhHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHH
Q 019094 30 GRAKRTGTWVTASAHIITAV-IGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~-iG~Gil~lP-~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (346)
++.+|+.+.++.+..-++.+ +|+|+...+ .+....|- ..+..+++.++.....+..+.|...+.+.. |. .+.|
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~a-GG-~Y~~-- 83 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPIS-GA-IYQW-- 83 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CC-HHHH--
Confidence 45678889999988888875 899998877 45666776 467778888888889999999988776533 32 2344
Q ss_pred HHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcc-cc-cCCCCcccccCCcchhHH-HHHHHHHHhcCC
Q 019094 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNC-FH-RHGHHVKCYTSNNPLMII-FACIQIVLSQIP 184 (346)
Q Consensus 108 i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-~~-~~~~~~~~~~~~~~~~ii-~~~~~~pl~~~~ 184 (346)
+++.+||+.++++.+..++................+..+.+... .. +++.... ......+.+. ..+++.-+...+
T Consensus 84 -~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~in~~ 161 (475)
T TIGR03428 84 -SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSP-SGAANAVLLGSVLLVLTTVINCI 161 (475)
T ss_pred -HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCC-CchHHHHHHHHHHHHHHHHHHHh
Confidence 57789999999999998887665554444444444444332100 00 0000000 0000111221 122222233344
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhH
Q 019094 185 NFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (346)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~ 264 (346)
..+...+++.+.++..+...+++++..+... .++. ....... .+. ..+.....+..+.....|+|.|.+.+..+.
T Consensus 162 g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~-~~~f~~~-~~~--~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 236 (475)
T TIGR03428 162 GVEWMSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGP-GVVFDTS-VTG--ASPGYYGAFLVSGLMAAYVMVGFGSAGELS 236 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc-ceeeecC-CCC--CCccHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 5555555555554443332222222222111 1110 0000000 000 011112345566667789999999999999
Q ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheee
Q 019094 265 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 301 (346)
Q Consensus 265 ~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~ 301 (346)
+|+|||+ |+.||++..+..++.++|.++-+....
T Consensus 237 eE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~~ 270 (475)
T TIGR03428 237 EETKNPR---RVAPRTILTALSVSALGGGLMILGALM 270 (475)
T ss_pred HHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999994 899999999999887766554444333
No 47
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.20 E-value=1.2e-10 Score=112.34 Aligned_cols=262 Identities=12% Similarity=0.010 Sum_probs=170.6
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil-~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i 108 (346)
.+.+|+.+..+-.+.-++.++|+|++ ....+.++.|-..-++..++.+...+.++..+.|..-+.|...|. .++|
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs-~~~y--- 101 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGS-FYTY--- 101 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccccccc-ceee---
Confidence 46788999999999999999999996 677889888887777888888899999999999988766532121 3455
Q ss_pred HHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHH-H-HHHHHHHhcCCCc
Q 019094 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMII-F-ACIQIVLSQIPNF 186 (346)
Q Consensus 109 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii-~-~~~~~pl~~~~~l 186 (346)
++...|+..++++.|..++..+..+.+-+...+.+++.+.. .+.-.......+...|... . .++++-+.-.+-.
T Consensus 102 a~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~----~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ 177 (554)
T KOG1286|consen 102 AYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG----ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAY 177 (554)
T ss_pred eeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc----cccccccccCCCCCccHHHHHHHHHHHHHHHHhhc
Confidence 47779999999999999999999999999999999999860 0000000001112222222 1 2222222333433
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccccccc-ccc-cCcchhhHHHHHhhhhhhhhhhccchhHHHhH
Q 019094 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT-VGV-DVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (346)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~ 264 (346)
.+.++...+-.+.+..-.++..+. +..+......+ +..+.+ ++. .--.+..+.++++++.+..|+|.|.+.+-...
T Consensus 178 ge~ef~~~~~kvl~~v~~~Il~iV-i~~G~~~~d~~-~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a 255 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFIILAIV-IIAGGGPADVK-NWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTA 255 (554)
T ss_pred cceeehHHHHHHHHHHHHHHhhee-eecCCCcCCcC-CCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHH
Confidence 444433333333222211111111 11111111111 222221 111 01112235678899999999999999999999
Q ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 265 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 265 ~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
+|.||| ||++|+++..++..+.++|.+..+.--+.-.
T Consensus 256 ~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vp 292 (554)
T KOG1286|consen 256 EEAKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVP 292 (554)
T ss_pred HhccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEec
Confidence 999999 4999999999999999999987766555443
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.14 E-value=7.3e-09 Score=100.48 Aligned_cols=254 Identities=10% Similarity=0.103 Sum_probs=134.1
Q ss_pred cccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~-~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
+||.++++.+...+++++|.+ .+|.++++.|.. +++..++.+++. ...+..+.|.....+...|. .+.| .++
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG-~Y~w---~~~ 78 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGG-IYSW---MNK 78 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-HHHH---HHH
Confidence 568899999999999999976 568888888865 555555555553 45667788877665532232 3455 478
Q ss_pred HcCCcchhhHHHHHHHHHHhHHHHHHHhh-hhhhHHHHhhcccccCCCCcccccCCcchh-HHH--HHHHHHHhcCCCcc
Q 019094 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITA-SISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIF--ACIQIVLSQIPNFH 187 (346)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-ii~--~~~~~pl~~~~~l~ 187 (346)
.+||+.+++..+..+.............. ......++..+.. ...+.. ..+..... ++. .++++-....|.++
T Consensus 79 ~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~a~~~~~~~t~vn~~g~~ 155 (496)
T PRK15238 79 SVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTT--QTWHFL-GLNSTQVVGILAVIWMILVTFVASKGIN 155 (496)
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchh--hhhhhh-cccchHHHHHHHHHHHHHHHHHHccchH
Confidence 89999998877654433332211111000 0000011110000 000000 01111111 111 11223334456666
Q ss_pred chhhHHHHHHHHHHHHHH-hhhhhhhhhhcCCCCCccccccccccccCcch-hhHHHHHhhhhhhhhhhccchhHHHhHh
Q 019094 188 KLSWLSILAAVMSFAYSS-IGIGLSIAKVIGDGPHATTLTGTTVGVDVSAS-EKVWRAFQAIGDVAFAYAFSTVLVEIQD 265 (346)
Q Consensus 188 ~l~~~s~~~~~~~~~~~i-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fsf~~~~~i~~i~~ 265 (346)
..+.++.++....+...+ .++...+.....+...+.+....++..+..+. ...+++..++....|+|.|.+.+....+
T Consensus 156 ~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~ 235 (496)
T PRK15238 156 KIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVD 235 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 666666554433322111 11111111111111111110000000000000 1123566777888999999999999999
Q ss_pred hhcCCCccccchhhhHHHHHHHHHHHHHhhhhhe
Q 019094 266 TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 299 (346)
Q Consensus 266 em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~g 299 (346)
|+|||+ |+.||++..+...+.++|.+..++.
T Consensus 236 E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 236 KTENPE---KNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred hccCCC---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999993 8999999999999999999765443
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.10 E-value=8.1e-10 Score=106.71 Aligned_cols=246 Identities=18% Similarity=0.182 Sum_probs=152.6
Q ss_pred HHHHhhhhhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhHHH
Q 019094 45 IITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGL 123 (346)
Q Consensus 45 li~~~iG~Gil-~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~~~ 123 (346)
.+..++|+|++ ..+.+..+.|....++..++.+++...++..+.|..++.+ +.| .+...+++.+||..++.+.+
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G----g~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG----GFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc----chhhhhhhccCCcCCceeeH
Confidence 46778999986 4777888999877788889999999999999999888765 333 45566788899999999999
Q ss_pred HHHHHHHhHHHHHHHhhhhhhHHH--HhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHHHHHHHH
Q 019094 124 AQYGNLIGVTIGYTITASISMVAV--KRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 201 (346)
Q Consensus 124 ~~~~~~~g~~~~y~i~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 201 (346)
..++.............+..++.+ .+. .. .. +.....+..+..+++ ........+....+...-....+
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~-~~~~~~~~~i~~~~~-~~l~~~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPG----LP---ST-WVWGILIAIIFILLI-TLLNLFGVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccccccc----cc---cc-ccccchhhhhhhhhh-hhhhhhhhhccchHHHHHHHHhh
Confidence 988887777777777776666554 221 00 00 100001122222222 22223333433333322222222
Q ss_pred HHHHhhhhhh-hhhhcCCCCCcc-----ccc---cccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCc
Q 019094 202 AYSSIGIGLS-IAKVIGDGPHAT-----TLT---GTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP 272 (346)
Q Consensus 202 ~~~i~~v~~~-~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~ 272 (346)
...+..++.. +.......+.+. +.. .+..+.+.+....+.+++.++....++|.|.+......+|.|||
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P-- 229 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNP-- 229 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCc--
Confidence 1111111111 111111111111 000 00001111122335688999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHhhhhheeeccCCCC
Q 019094 273 ENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 307 (346)
Q Consensus 273 ~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~ 307 (346)
||++||++..++..+.++|++.....-...+.+.
T Consensus 230 -~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 230 -RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred -hhhhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 4899999999999999999988887777666544
No 50
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.08 E-value=1.5e-08 Score=97.98 Aligned_cols=248 Identities=8% Similarity=-0.039 Sum_probs=138.6
Q ss_pred CCCcccccHHHHHHHHHHHhhh--hhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIG--SGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM 106 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG--~Gil~-lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~ 106 (346)
++.+|+.+.++.+...+.. +| +|+.. .+.++++.|....+..+++.+++....+..+.|...+.+.. |. .+.|
T Consensus 8 ~~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~-Gg-~y~~- 83 (482)
T TIGR00907 8 PELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTS-GG-QYFW- 83 (482)
T ss_pred ceeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCC-cc-HHHH-
Confidence 3456778888887777774 44 66654 55677788876567788889999999999999988766533 32 2333
Q ss_pred HHHHHHcC----CcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHH--HHHHHHH
Q 019094 107 DVVRASLG----GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIF--ACIQIVL 180 (346)
Q Consensus 107 ~i~~~~~G----~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~--~~~~~pl 180 (346)
+++.+| +...+++.|..++.....+.+.....++++..+.... +++.. ...++.....+. .++++-+
T Consensus 84 --~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~i~~~~~~~~~~ 156 (482)
T TIGR00907 84 --SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT--TPGRE---YIPTRWHIFGIMIGIHLIHAL 156 (482)
T ss_pred --HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC---ccccCchhhhhHHHHHHHHHH
Confidence 455665 5667888888777777766666666777766554311 11000 001111111111 1222233
Q ss_pred hcCCCccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCC-CCCccccccccccccC-cchhhHHHHHhhhhhhhhhhccch
Q 019094 181 SQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGD-GPHATTLTGTTVGVDV-SASEKVWRAFQAIGDVAFAYAFST 258 (346)
Q Consensus 181 ~~~~~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~fsf~~~~ 258 (346)
...+..+....+..+..+..++..+++++..+.....+ .+.+....++ .++. ......++...++....|+|.|.+
T Consensus 157 in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~--~~~~~g~~~~g~~~~~~~~~~~fsf~G~e 234 (482)
T TIGR00907 157 INSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNF--NNSTGGWKPGGFAFLLGLLNPAWSMTGYD 234 (482)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheee--eCCCCCcCCCchhhhhhhhhhHHHhcCcc
Confidence 33344444554444433333222111111111111111 0000000110 0000 001112355566666789999999
Q ss_pred hHHHhHhhhcCCCccccchhhhHHHHHHHHHHHHH
Q 019094 259 VLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYI 293 (346)
Q Consensus 259 ~i~~i~~em~~p~~~~~~~~~~~~~s~~~~~~~y~ 293 (346)
......+|+|||+ |++||++..+..++.+++.
T Consensus 235 ~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~ 266 (482)
T TIGR00907 235 GTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGF 266 (482)
T ss_pred hhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHH
Confidence 9999999999993 8999999999887765444
No 51
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.98 E-value=4.3e-09 Score=86.12 Aligned_cols=222 Identities=15% Similarity=0.262 Sum_probs=140.9
Q ss_pred cHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccC----------------CC-----
Q 019094 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRS----------------PD----- 95 (346)
Q Consensus 37 s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~----------------~~----- 95 (346)
|..-....+.|-++|+|-|++|.+|+.+||.+++.++.+.++.++.+..+++|+... .+
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 344556678899999999999999999999999999999999999999999886510 00
Q ss_pred -----------------------CCCCc-------ccccHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhH
Q 019094 96 -----------------------PVTGK-------RNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMV 145 (346)
Q Consensus 96 -----------------------~~~~~-------~~~~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~ 145 (346)
++.|. +.-+.++++...|.|.+-.+.-++++++.+|....|.-..-...-
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 00000 012678889999999999999999999999999988766554443
Q ss_pred HHHhh-----ccc-ccCCC---CcccccC-------CcchhHHHH-HHHHHHhcCCCccchhhHHHHHHHHHHHHHHhhh
Q 019094 146 AVKRS-----NCF-HRHGH---HVKCYTS-------NNPLMIIFA-CIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGI 208 (346)
Q Consensus 146 ~l~~~-----~~~-~~~~~---~~~~~~~-------~~~~~ii~~-~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~i~~v 208 (346)
++.-. -|. +.+.. .+.||-. .+.+++++. ++.+|+. +-++.+.++++.+.....+...+..+
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpft-f~diqktk~iqiltslmrw~~~~~g~ 251 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFT-FADIQKTKHIQILTSLMRWAAFILGI 251 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCcee-EeccccchhHHHHHHHHHHHhccchh
Confidence 33211 111 00100 1123321 122333332 2333443 34678888888888887775332222
Q ss_pred hhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCC
Q 019094 209 GLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (346)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p 270 (346)
.+.-....++.. +-+++...+-++-+.++..+|+|++|.++|.....++.+
T Consensus 252 ~l~tmqaeedaa-----------~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 252 SLATMQAEEDAA-----------AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhhhccccc-----------ccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 221112211111 112233334455567788899999999999988777654
No 52
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.91 E-value=1.7e-07 Score=91.06 Aligned_cols=239 Identities=12% Similarity=0.036 Sum_probs=122.4
Q ss_pred cccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHH--HHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT--YYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~--~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
+||.+...-++..+.++. ++..+| .+++.|+ +.+.+.+++.+. ...+....|.....++..|. .+.| ++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG-~y~w---v~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGG-IFAW---VS 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCC-eeee---hh
Confidence 356788777777777774 557888 4778884 344444444444 44777888877654322232 4566 48
Q ss_pred HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHH---HHHHhcCCCcc
Q 019094 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI---QIVLSQIPNFH 187 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~---~~pl~~~~~l~ 187 (346)
+.+||+.+++..+..++.......+.............. .++ .....+...+..++ .+.+...+..+
T Consensus 74 ~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~----~~~------~~~~~~~~~i~~l~i~~~~t~~n~~G~k 143 (507)
T TIGR00910 74 NTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK----FPA------LNEDPIIKFIAALIIFWALAFSQFGGTK 143 (507)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cch------hccCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 889999999877776665543222211111111111111 000 00111222222222 22222333344
Q ss_pred chhhHHHHHHHHH-HHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhh
Q 019094 188 KLSWLSILAAVMS-FAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (346)
Q Consensus 188 ~l~~~s~~~~~~~-~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e 266 (346)
....++.++.+.. +...+++++........+.+...+.+... ..+..+..+....+....|+|.|.+......+|
T Consensus 144 ~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E 219 (507)
T TIGR00910 144 RTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHA----FFPDFSKVGTLVVFVAFIGAYMGVEASASHINE 219 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHh----cCCCcccccHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 4444433322211 11111122222222222221111100000 001111112334444568999999999999999
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhhh
Q 019094 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGV 297 (346)
Q Consensus 267 m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~ 297 (346)
+|||+ |+++|++..+..++.++|.+..+
T Consensus 220 ~knP~---r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 220 LENPG---RDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred ccCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 99994 89999999999999998886444
No 53
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.81 E-value=9e-07 Score=85.46 Aligned_cols=248 Identities=12% Similarity=0.070 Sum_probs=124.0
Q ss_pred cccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCCCcccccHHHHHHHHc
Q 019094 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (346)
Q Consensus 35 ~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~-~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~ 113 (346)
|.+...-++..+.+++ ++..+|.. +..|.. +++.+++.+++. ...+....|.....+...| .+.| +++.+
T Consensus 2 ~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG--~y~~---~~~a~ 72 (474)
T TIGR03813 2 KLTVVTLAIMNITAVV--SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKGG--VFRW---VGEAF 72 (474)
T ss_pred cccHHHHHHHHHHHHH--HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCC--ceee---Hhhhc
Confidence 4555555554444443 44556755 567854 455555555544 3577788888776654333 4455 58889
Q ss_pred CCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHH---HHHHhcCCCccchh
Q 019094 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI---QIVLSQIPNFHKLS 190 (346)
Q Consensus 114 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~---~~pl~~~~~l~~l~ 190 (346)
|++.+++..+..++........-.......+..+.+.....+. .....+......++ .+-+...+.++...
T Consensus 73 G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~ 146 (474)
T TIGR03813 73 GARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDES------LAGNKLYVLVSVLFVYWLATFIALRGVAAFT 146 (474)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcc------cccccHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 9999999998887765432221111122222211110000000 10111222111111 22233445555555
Q ss_pred hHHHHHH-HHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcC
Q 019094 191 WLSILAA-VMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS 269 (346)
Q Consensus 191 ~~s~~~~-~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~ 269 (346)
.++.+.. +..++..++.++..+.....+...+.+ .+++.-.+...++.....+ ..+.|+|.|.+.+....+|+||
T Consensus 147 ~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~---~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 147 KVAKWGGIVGTIIPAAILVILGISYLLTGGESQIP---LRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccC
Confidence 5544322 111111111122222221122111110 0000000000111222222 2457899999999999999999
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 270 SPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 270 p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
|+ |+.+|++..+..++.++|.+..+......+
T Consensus 223 P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 223 PD---KNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred cc---cchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 94 899999999999999999976665544444
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.64 E-value=1.5e-06 Score=76.90 Aligned_cols=217 Identities=9% Similarity=0.035 Sum_probs=139.3
Q ss_pred HHHHHHHHHHhhhhhhhHHH---HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCC
Q 019094 39 VTASAHIITAVIGSGVLSLA---WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (346)
Q Consensus 39 ~~~~~~li~~~iG~Gil~lP---~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~ 115 (346)
.+-.+-.+++++|+|.=+=- .=|..-|+. |+...++++++-..++..+.+..++.+ ..+|.|+-+.++||
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~~~ 78 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVSGP 78 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHhhH
Confidence 34456677899999987633 334566666 778888899999999999999888766 45899999999999
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHH
Q 019094 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSIL 195 (346)
Q Consensus 116 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~ 195 (346)
+...+.|..+.++.++.++.-+-..|+.+++-+. .+...-.+++.+++..+.++++.+.+-.+..+
T Consensus 79 ~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~--------------lP~wiGali~i~~v~i~lfl~~vegi~tvn~i 144 (349)
T COG3949 79 KFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--------------LPYWIGALIIILLVLILLFLGRVEGIITVNGI 144 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC--------------ccHHHHHHHHHHHHHHHHHHhcccceeeehee
Confidence 9999999999999999999999999988888763 22222224445555555667777777766666
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHH---HhhhhhhhhhhccchhHHHhHhhhcCCCc
Q 019094 196 AAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRA---FQAIGDVAFAYAFSTVLVEIQDTLKSSPP 272 (346)
Q Consensus 196 ~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fsf~~~~~i~~i~~em~~p~~ 272 (346)
-+...+...+.+........ .++... .+.+...+|+.. ..++.+.+ +...+.++-+|||++
T Consensus 145 I~P~LIi~l~~v~~~~~f~~-~~~~a~---------~~~~~~~~W~~~~~~Y~alNi~~----~~avLv~lg~~~~~~-- 208 (349)
T COG3949 145 ITPFLIIILVLVTLSFQFTN-LGNAAQ---------IVLTKQGNWKASAVGYGALNILV----AVAVLVPLGGRMESR-- 208 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhh-ccchhh---------hcCCcCCChHHHHHhhhhHHHHh----HhHhhhhhccccccc--
Confidence 55554433222211111111 111111 111223333322 22333222 455677888999998
Q ss_pred cccchhhhHHHHHHHHHHHHHh
Q 019094 273 ENKSMKRATAVGVTTTTLFYIM 294 (346)
Q Consensus 273 ~~~~~~~~~~~s~~~~~~~y~~ 294 (346)
|...+....+-.+.+++..+
T Consensus 209 --~~~~~g~l~gglIlgvl~~l 228 (349)
T COG3949 209 --KVSGIGGLIGGLILGVLLFL 228 (349)
T ss_pred --chhhhhhhhhhHHHHHHHHH
Confidence 66666666555555544443
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.35 E-value=2.8e-05 Score=73.59 Aligned_cols=238 Identities=10% Similarity=0.024 Sum_probs=131.4
Q ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH---HcCCcchhhHHHHHHHHHHhH
Q 019094 56 SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA---SLGGRSVQLCGLAQYGNLIGV 132 (346)
Q Consensus 56 ~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~---~~G~~~~~i~~~~~~~~~~g~ 132 (346)
++.+++...|...-.-.+++.+.+....+.-|+|.....| ..|.- |.--++. =+||...|++.+...+.+...
T Consensus 72 sm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~P-tsGgL---y~waa~lap~k~~~~~sw~~Gw~~~~g~~~~ 147 (550)
T KOG1289|consen 72 SMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMP-TSGGL---YFWAAVLAPPKYGPFASWVTGWLNYLGQATG 147 (550)
T ss_pred heeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCC-CCCcH---HHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 3555665566444444567777888888888999776654 33322 2222222 134444555555555544444
Q ss_pred HHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhc--CCCccchhhHHHHHHHHHHHHHHhhhhh
Q 019094 133 TIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ--IPNFHKLSWLSILAAVMSFAYSSIGIGL 210 (346)
Q Consensus 133 ~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~--~~~l~~l~~~s~~~~~~~~~~~i~~v~~ 210 (346)
..+-....++.+...... .+++. ..++.....+...+.+..++ ...-+.+++++.+++...++..++..+.
T Consensus 148 ~aSi~~S~A~~i~~~v~l---~np~y----~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~ 220 (550)
T KOG1289|consen 148 VASITYSLAQLILGAVSL---TNPNY----EPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMIT 220 (550)
T ss_pred chhhhHHHHHHHHHHHhh---cCCCC----cccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444332 11111 11222222333333222222 2234677778877777777654444443
Q ss_pred hhhhhcCCCCCcccccccc-ccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCccccchhhhHHHHHHHHH
Q 019094 211 SIAKVIGDGPHATTLTGTT-VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 289 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~~~~ 289 (346)
.....-.+.+++.....+. ++.+......-|.+..++-...+.+.|......+.+|.||++ |+.||++..+..+..
T Consensus 221 lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~ 297 (550)
T KOG1289|consen 221 LLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGF 297 (550)
T ss_pred hhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHH
Confidence 3332222211121111111 011111122557788888888999999999999999999995 899999999999888
Q ss_pred HHHHhhhhheeeccCCCC
Q 019094 290 LFYIMCGVMGYLAFGNDA 307 (346)
Q Consensus 290 ~~y~~~~~~gy~~fg~~~ 307 (346)
++=..+-+.-.++-+++.
T Consensus 298 i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 298 ILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred HHHHHHHHHHHHhccchH
Confidence 887776666666666543
No 56
>PRK11375 allantoin permease; Provisional
Probab=98.19 E-value=0.00085 Score=64.83 Aligned_cols=226 Identities=12% Similarity=0.037 Sum_probs=116.2
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhHHHHHH-HHHHhHHHHHHHhhhh
Q 019094 64 LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQY-GNLIGVTIGYTITASI 142 (346)
Q Consensus 64 ~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~~~~~~-~~~~g~~~~y~i~~~~ 142 (346)
.++..+++..++..++...-+.+......++ ..++.-+.+..||+++..+..+... +..++=........++
T Consensus 57 Ls~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-------Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~ 129 (484)
T PRK11375 57 LSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-------GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSL 129 (484)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccccc-------CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555665555555555555555544333 2378889999999999988888874 4556666666777777
Q ss_pred hhHHHHhhcccccCC--CC-cccccCCcchh--HHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 019094 143 SMVAVKRSNCFHRHG--HH-VKCYTSNNPLM--IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIG 217 (346)
Q Consensus 143 ~l~~l~~~~~~~~~~--~~-~~~~~~~~~~~--ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~ 217 (346)
.++.++.....+... ++ ..-..+...++ +++.++..++. ....+.++++..++....+..++..++..+...
T Consensus 130 al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~-- 206 (484)
T PRK11375 130 ALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV-- 206 (484)
T ss_pred HHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 777666432211110 00 00011111122 23344444544 345677777777776666543333332222222
Q ss_pred CCCCccccccccccccCcchhhHHHHHhhhhhhhhhhc-cchhHHHhHhhhcCCCccccchhhhHHHHHHHHHHHHHhhh
Q 019094 218 DGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYA-FSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG 296 (346)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~-~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~ 296 (346)
+ ..+.. ..............+.+..++...+=++. ...+.|...|..|++ |+-.+...+++.+...+...+|
T Consensus 207 g--~~~~~-~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g 279 (484)
T PRK11375 207 G--IGPIF-DYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVAS 279 (484)
T ss_pred C--Cchhh-ccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHH
Confidence 1 11110 00000000111123445555544444444 345789999999888 6566666667766666554444
Q ss_pred hhe----eeccCCC
Q 019094 297 VMG----YLAFGND 306 (346)
Q Consensus 297 ~~g----y~~fg~~ 306 (346)
++. ...+|+.
T Consensus 280 ~~~~~~a~~~~g~~ 293 (484)
T PRK11375 280 VCIIAGASIHYGAD 293 (484)
T ss_pred HHHHHHHHHHhCCC
Confidence 433 3455543
No 57
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.10 E-value=0.00063 Score=65.13 Aligned_cols=256 Identities=18% Similarity=0.145 Sum_probs=134.6
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhhHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ--LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~--~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i 108 (346)
+++|+.++++-+..-.+..+...-+........ .++.-+++..++..++...-..+......++ | .++.-+
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~----G---l~~~v~ 81 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY----G---LPFPVL 81 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh----C---CCcchh
Confidence 334454555444444444444433333333322 3344444444444444443333444433222 2 256778
Q ss_pred HHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccC--CcchhHHHHHHHHHHhcCCCc
Q 019094 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTS--NNPLMIIFACIQIVLSQIPNF 186 (346)
Q Consensus 109 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~pl~~~~~l 186 (346)
.+..||+++..+..+...+...+=...-....++.++.+++...... .+. ....+ .....+++.++.+++......
T Consensus 82 sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~-~~~-~~~~t~~~~~~~~i~~~l~~~~~~~~g~ 159 (442)
T TIGR00800 82 SRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGY-LHL-GNGMTTLELICFIIFWALVLVFLFFFGY 159 (442)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc-ccc-CCcccHHHHHHHHHHHHHHHHHHHcCHH
Confidence 89999999999999999999999999999999999988877432110 000 00001 112223444555555555544
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhh-hccchhHHHhHh
Q 019094 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFA-YAFSTVLVEIQD 265 (346)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs-f~~~~~i~~i~~ 265 (346)
+..+.....+....+...+..+ ..+.+.....+.... +. ..+.....+.+..++...+-. -....+.+...+
T Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~-----~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysR 232 (442)
T TIGR00800 160 KIRHLFEWLAVVPPFAAFGMLI-WALSKAHGKGPLGEL-TG-----TLHGSTGAWAFLYALSLVIGSFATWATNAPDFTR 232 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCccccC-CC-----CCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhh
Confidence 5555555555544332221211 111111111100000 00 001122345555555553322 233557899999
Q ss_pred hhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeec----cCCC
Q 019094 266 TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA----FGND 306 (346)
Q Consensus 266 em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~----fg~~ 306 (346)
.+|++ |+-.+....++....+....+|+.+-.. +|+.
T Consensus 233 y~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 233 FGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred hcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99998 5556667777777777777777777655 7654
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.90 E-value=0.0023 Score=61.78 Aligned_cols=154 Identities=10% Similarity=0.084 Sum_probs=99.3
Q ss_pred CCcccccHHHHHHHHHHHhhhhhh-hHHHHHHHHhChhHHHHHHH--HHHHHH-HHHHHHHHhcccCCCCCCCcccccHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLM--AFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYM 106 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gi-l~lP~~~~~~G~~~g~~~~~--~~~~l~-~~t~~~l~~~~~~~~~~~~~~~~~y~ 106 (346)
...|+.+++...+.+..+.+|++. ++.|....+.|+........ ..+.+. ..-+..+.+..|+.+ ..|..
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~T~~ 110 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN------AITIN 110 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CccHH
Confidence 446788888999999999888776 57887777777532111110 011111 111222223334433 56999
Q ss_pred HHHHHHcCCcc-hhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCC
Q 019094 107 DVVRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (346)
Q Consensus 107 ~i~~~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (346)
|.-++-||++. +.+..+...+..++...+.+...+..++.+++ .+....+++..+++........
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999654 66777777777888777788888888887763 2233334445555666667788
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 019094 186 FHKLSWLSILAAVMSFAYS 204 (346)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~ 204 (346)
++...++..+..+.++...
T Consensus 177 ~~av~~td~iQ~~v~~~~~ 195 (471)
T TIGR02119 177 FRAVALTDAIQGIVMFTGT 195 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999877666533
No 59
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.88 E-value=0.002 Score=62.45 Aligned_cols=154 Identities=13% Similarity=0.080 Sum_probs=95.1
Q ss_pred CCcccccHHHHHHHHHHHhhhhh-hhHHHHHHHHhChhHHHHHHH--HHHH-HHHHHHHHHHhcccCCCCCCCcccccHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLM--AFSF-ITYYTSTLLSDCYRSPDPVTGKRNYTYM 106 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~G-il~lP~~~~~~G~~~g~~~~~--~~~~-l~~~t~~~l~~~~~~~~~~~~~~~~~y~ 106 (346)
...|+.+++...+.+..+.+|++ .++.|....+.|+........ .... ...+-+..+.+..|+.+ ..|..
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~------~~T~~ 111 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN------AVTLN 111 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CccHH
Confidence 34667778888888888877764 467886666677532111110 1111 11122223333334433 56899
Q ss_pred HHHHHHcCCcc-hhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCC
Q 019094 107 DVVRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (346)
Q Consensus 107 ~i~~~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (346)
|..++-||++. +.+..+...+..+......+...+..++.+++ ++....+++..++++.......
T Consensus 112 e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG 177 (483)
T PRK09442 112 DMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFGG 177 (483)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999754 55555556666666677777788888887763 2233334555556666777888
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 019094 186 FHKLSWLSILAAVMSFAYS 204 (346)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~ 204 (346)
++...+...+..+..+...
T Consensus 178 l~av~~TD~iQ~~i~~~~~ 196 (483)
T PRK09442 178 FRAVVLTDALQGIVMLVGT 196 (483)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999877666533
No 60
>PRK12488 acetate permease; Provisional
Probab=97.78 E-value=0.005 Score=60.63 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=102.7
Q ss_pred CCcccccHHHHHHHHHHHhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHH-HHHHHHhcccCCCCCCCcccccHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYY-TSTLLSDCYRSPDPVTGKRNYTYMDV 108 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gi-l~lP~~~~~~G~~~g~~~~~~~~~l~~~-t~~~l~~~~~~~~~~~~~~~~~y~~i 108 (346)
.-.|+.+++...+.+..+.+|++. ++.|......|+. +.... +...+.+. ...++.+-.|+.. .+|..|.
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~-~g~~~g~~~~~~~~a~~lr~~g------~~T~~d~ 135 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYA-LGVLAGWPIILFLIAERLRNLG------KYTFADV 135 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHH-HHHHHHHHHHHHHHHHHHHHCC------CcchHHH
Confidence 446788888888888888777765 6899877778864 22111 11112221 1234454444433 4688888
Q ss_pred HHHHcC-CcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCcc
Q 019094 109 VRASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (346)
Q Consensus 109 ~~~~~G-~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~ 187 (346)
-++=|| |..+.+..+...+..+......+...+..++.++. ++...-+++..++.......-.++
T Consensus 136 l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~ 201 (549)
T PRK12488 136 VSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGML 201 (549)
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchh
Confidence 888888 56788888888888888888888888888887763 223333445556666666778899
Q ss_pred chhhHHHHHHHHHHHHHHh
Q 019094 188 KLSWLSILAAVMSFAYSSI 206 (346)
Q Consensus 188 ~l~~~s~~~~~~~~~~~i~ 206 (346)
...+...+..+.++...++
T Consensus 202 av~~td~iQ~~im~~~~i~ 220 (549)
T PRK12488 202 ATTWVQIIKAVLLLSGTSF 220 (549)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999997766654333
No 61
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.77 E-value=0.013 Score=55.52 Aligned_cols=271 Identities=15% Similarity=0.103 Sum_probs=131.1
Q ss_pred CcccCCCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccc
Q 019094 26 LDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLG--WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNY 103 (346)
Q Consensus 26 ~~~~~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G--~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~ 103 (346)
..+.++++|+=++++-+..=.+...-.+--.+..+.-+.| +.-.++.+++..++....+.+-.+...++ .-
T Consensus 31 L~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~-------gI 103 (497)
T COG1953 31 LAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKY-------GI 103 (497)
T ss_pred CCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCccccc-------CC
Confidence 3334455666565544433333333333222222222333 33344444444455555555544444333 23
Q ss_pred cHHHHHHHHcCCcchhhHHHHH---HHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCC--c-ccccCCcchhHHHHH-H
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQ---YGNLIGVTIGYTITASISMVAVKRSNCFHRHGHH--V-KCYTSNNPLMIIFAC-I 176 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~---~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~--~-~~~~~~~~~~ii~~~-~ 176 (346)
+|..+.+..||-++..+-.+.- .+..+|. ..-..+..++.++.....+..... . .-..+...++..+.. +
T Consensus 104 pFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGv---qty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~ 180 (497)
T COG1953 104 PFPVLSRASFGIYGANFPALIRAIVAIVWYGV---QTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWV 180 (497)
T ss_pred CchHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHH
Confidence 8999999999988866655543 2333333 344555555555554332211100 0 112222333332222 2
Q ss_pred HHHHhcCCCccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhc-
Q 019094 177 QIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYA- 255 (346)
Q Consensus 177 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~- 255 (346)
+-.++..+..+++|++-..+..++...+.-.++..+.+...... ..+.++ ........+|.++..... +..+-
T Consensus 181 l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~-~~~~p~----~~~~~~~~~w~~~~~~~~-~v~~~A 254 (497)
T COG1953 181 LQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSI-LGELPA----GTVSGSNSSWAFLAGIAA-WVGFWA 254 (497)
T ss_pred HHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCc-cccCCC----CCCCcchhHHHHHHHHHH-HHHHHH
Confidence 33334566788888888888777776554444443333322111 111111 011223334444433322 22221
Q ss_pred -cchhHHHhHhhhcCCCccccchhhhHHHHHHHHHHHH----HhhhhheeeccCCCCC--cccccccC
Q 019094 256 -FSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFY----IMCGVMGYLAFGNDAP--GNFLTGFG 316 (346)
Q Consensus 256 -~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~~~~~~y----~~~~~~gy~~fg~~~~--~~il~n~~ 316 (346)
..-|+|...|.-|+| |...+.-..+..+.+.+. .+.+..++..||+... .+++.+++
T Consensus 255 tl~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 255 TLALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHhcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 245789999998887 333333334444444444 4445556889999854 57788775
No 62
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.73 E-value=0.0047 Score=57.46 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=51.4
Q ss_pred HHHHHhhhhhhhHHHHH-HHHhC--hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhh
Q 019094 44 HIITAVIGSGVLSLAWA-IAQLG--WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQL 120 (346)
Q Consensus 44 ~li~~~iG~Gil~lP~~-~~~~G--~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i 120 (346)
.+...-+|+|.|-.|-. -+++| |..+.+.+++.++..-..+.+ +.. +.| -+|.++.++ +||+.+.+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~----~~g---G~~~~l~~~-~g~~f~~l 71 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALA----LVG---GGYDSLSAR-IGKVFGIL 71 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eee----ecC---CCHHHHHHH-hChHHHHH
Confidence 45677899999998855 45565 778888888888777665555 111 111 168888877 78888888
Q ss_pred HHHHHHHHH
Q 019094 121 CGLAQYGNL 129 (346)
Q Consensus 121 ~~~~~~~~~ 129 (346)
..+.+.+..
T Consensus 72 f~~~~~l~i 80 (378)
T TIGR00796 72 FTVILYLTI 80 (378)
T ss_pred HHHHHHHHH
Confidence 777766543
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.73 E-value=0.0016 Score=61.60 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=100.0
Q ss_pred cccccHHHHHHHHHHHhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gi-l~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
.|+.+++...+.+..+.+|++. ++.|....+.|+. +....+...+.......+..+..|+.+ ..|..|..++
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~T~~e~l~~ 74 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNG------AYTMPEYLEK 74 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC------CCchhHHHHH
Confidence 3566777888888877777655 6788777777854 232222233333344555555544433 5689999999
Q ss_pred HcCC-cchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchh
Q 019094 112 SLGG-RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (346)
Q Consensus 112 ~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (346)
-||+ ..+.+..+...+..+......+...+..++.+++ .+...-.++..++++.......++...
T Consensus 75 Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av~ 140 (407)
T TIGR00813 75 RFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAVV 140 (407)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 9998 4566666777788888888888888888888763 222233444455555666777899999
Q ss_pred hHHHHHHHHHHH
Q 019094 191 WLSILAAVMSFA 202 (346)
Q Consensus 191 ~~s~~~~~~~~~ 202 (346)
+...+..+.++.
T Consensus 141 ~Td~iQ~~i~~~ 152 (407)
T TIGR00813 141 WTDTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHHHH
Confidence 999999777654
No 64
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.70 E-value=0.0016 Score=61.24 Aligned_cols=150 Identities=12% Similarity=0.009 Sum_probs=85.9
Q ss_pred ccccHHHHHHHHHHHhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccH-----HH
Q 019094 34 RTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY-----MD 107 (346)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~G-il~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y-----~~ 107 (346)
++.|.+++.+....+.+|+| ++++|-+.+..| -.+++.+.+.+++...+.+...-...+..++.+ ..+| ..
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~--~g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA--DGVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC--CCCEecChHHH
Confidence 45799999999999999998 999999977666 446666666666555443333332221111111 1124 67
Q ss_pred HHHHHcCCcchhhHHHHHHHHHHh-HHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCc
Q 019094 108 VVRASLGGRSVQLCGLAQYGNLIG-VTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNF 186 (346)
Q Consensus 108 i~~~~~G~~~~~i~~~~~~~~~~g-~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l 186 (346)
+-+...|||.+.+..+. .+..++ .+....-...+.++..+ .. ..+...+...++........+
T Consensus 122 i~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~--------------~~-~~~v~~i~l~~l~~~vi~GGi 185 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF--------------NV-PKLVTGIVLTVLTALIIFGGL 185 (425)
T ss_pred HHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc--------------CC-cHHHHHHHHHHHHHHHHhcCc
Confidence 77888888877777776 433333 23333333333333211 11 122223333344444455677
Q ss_pred cchhhHHHHHHHHHHH
Q 019094 187 HKLSWLSILAAVMSFA 202 (346)
Q Consensus 187 ~~l~~~s~~~~~~~~~ 202 (346)
+.+..++...+..+..
T Consensus 186 k~Ia~v~~~lvP~m~~ 201 (425)
T TIGR00835 186 KRIAKISSVVVPFMAL 201 (425)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7777777666665544
No 65
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.69 E-value=0.0055 Score=59.45 Aligned_cols=160 Identities=12% Similarity=0.017 Sum_probs=103.0
Q ss_pred CCcccccHHHHHHHHHHHhhh-hhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIG-SGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG-~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
..+|+.+.+-..+....+..+ .-+++.|......|+..-....... +.......++.+-.++...+.+ ..|..|.-
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~-~~~~~~~~~~~~rl~~~~~~~~--~~T~~d~l 111 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLL-IGAFLLWLLFAPRLRRLAKARG--ATTIPDFL 111 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccC--CccHHHHH
Confidence 345555555666666666666 6778999988888866433333321 2222222233332222111112 55999999
Q ss_pred HHHcC-CcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccc
Q 019094 110 RASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (346)
Q Consensus 110 ~~~~G-~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~ 188 (346)
++=|| |..+.+..+...+.....+...++..+..++..+. .+...-.++...++..-..+-.++.
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------------i~~~~~~~~~~~~v~~Yt~~gG~~a 177 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------------ISYVTGILIGALIVALYTFLGGLRA 177 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CCHHHHHHHHHHHHHHHHHHcChhH
Confidence 99999 89999999999999999999999999998865552 2222333444555555566777888
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 019094 189 LSWLSILAAVMSFAYSSIG 207 (346)
Q Consensus 189 l~~~s~~~~~~~~~~~i~~ 207 (346)
..++..+....+...+..+
T Consensus 178 v~~Td~iqg~im~i~~~~~ 196 (493)
T COG0591 178 VVWTDFIQGLIMLIALIVI 196 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877766544333
No 66
>PRK09395 actP acetate permease; Provisional
Probab=97.61 E-value=0.013 Score=57.67 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=97.2
Q ss_pred CCcccccHHHHHHHHHHHhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gi-l~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
...|+.+++...+.+..+.+|++. ++.|......|+.. ....+...+.......++.+-.|+.+ .+|+.|..
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~~g------~~T~~d~l 138 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRNLG------KYTFADVA 138 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhCC------CccHHHHH
Confidence 446777787888888888777654 68997777778642 21111111111222334455445443 56899999
Q ss_pred HHHcCC-cchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccc
Q 019094 110 RASLGG-RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (346)
Q Consensus 110 ~~~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~ 188 (346)
++=||+ ..+.+..+...+..+..........+..++.++. .+...-+++..+++......-.++.
T Consensus 139 ~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~a 204 (551)
T PRK09395 139 SYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLA 204 (551)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHH
Confidence 888984 5777777777776666677777777777777653 2233334555566666667778888
Q ss_pred hhhHHHHHHHHHHH
Q 019094 189 LSWLSILAAVMSFA 202 (346)
Q Consensus 189 l~~~s~~~~~~~~~ 202 (346)
..+...+..+.++.
T Consensus 205 v~~TD~iQ~iim~~ 218 (551)
T PRK09395 205 TTWVQIIKAVLLLS 218 (551)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888766654
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.57 E-value=0.00071 Score=64.06 Aligned_cols=153 Identities=10% Similarity=0.148 Sum_probs=92.0
Q ss_pred cccccHHHHHHHHHHHhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~G-il~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
.|+.+++...+.+..+.+|++ +++.|....+.|+.. ....+...........++.+-.|+.+ ..|..|.-++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~------~~T~~e~~~~ 77 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSG------AVTIPEYLEK 77 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT--------SHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcccc------hhhhhhhhhh
Confidence 466778888888888888875 468898888888753 33333333333444455566555433 5689999999
Q ss_pred HcCCcc--hhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccch
Q 019094 112 SLGGRS--VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 112 ~~G~~~--~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (346)
-||+.. +.+..+...+.........+...+..++.+.. .+.....++..++++.....-.++..
T Consensus 78 Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 78 RYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp HT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT-----
T ss_pred hcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhhh
Confidence 999988 55555556666777777788888888887663 22333444555556566677788888
Q ss_pred hhHHHHHHHHHHHHHHh
Q 019094 190 SWLSILAAVMSFAYSSI 206 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~ 206 (346)
.+...+..+.++...++
T Consensus 144 ~~td~iQ~~i~~~~~~~ 160 (406)
T PF00474_consen 144 AWTDFIQGVIMIIGAIV 160 (406)
T ss_dssp -SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88888888766553333
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.48 E-value=0.013 Score=57.67 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=95.9
Q ss_pred CCcccccHHHHHHHHHHHhhh-hhhhHHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCcccccHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIG-SGVLSLAWAIAQLGWVAGPAVLMAFSFITY-YTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG-~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~-~t~~~l~~~~~~~~~~~~~~~~~y~~i 108 (346)
.-.|+.+++...+.+..+.++ ...++.|....+.|+. +....+ ...+.+ ....++.+-.|+.. .+|..|.
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr~g------~~T~~d~ 135 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRNLG------RYTFADV 135 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHHcC------CccHHHH
Confidence 345677777777777777666 4567899877777854 222221 111222 23344555455443 4689998
Q ss_pred HHHHcC-CcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCcc
Q 019094 109 VRASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (346)
Q Consensus 109 ~~~~~G-~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~ 187 (346)
.++=|| |..+.+..+...+..+......+...+..++.++. .+...-+++..+++........++
T Consensus 136 l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGm~ 201 (549)
T TIGR02711 136 ASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMYVLFGGML 201 (549)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhhH
Confidence 888787 45677777777776677777778888888877763 223333445555666666777888
Q ss_pred chhhHHHHHHHHHHH
Q 019094 188 KLSWLSILAAVMSFA 202 (346)
Q Consensus 188 ~l~~~s~~~~~~~~~ 202 (346)
...+...+..+.++.
T Consensus 202 av~~td~iQ~~im~~ 216 (549)
T TIGR02711 202 ATTWVQIIKAVLLLF 216 (549)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888999988776654
No 69
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.44 E-value=0.034 Score=54.90 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=97.9
Q ss_pred CCcccccHHHHHHHHHHHhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~G-il~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
...|+.+++...+.+..+.++++ +++.|......|+.. ....+...+.....+.++.+-.|+.+ ..|-.|.-
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr~~------~~T~~e~l 101 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRKFG------KYTVPDFI 101 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHCC------CccHHHHH
Confidence 44678888888888888888664 578887776777542 11111111112223456666666654 45788888
Q ss_pred HHHcCCc-chhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccc
Q 019094 110 RASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (346)
Q Consensus 110 ~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~ 188 (346)
++=||++ .+.+..+...+.........+...+..++.+.. .+...-+++..+++......-.++.
T Consensus 102 ~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iYt~~GG~~a 167 (552)
T TIGR03648 102 GDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFYAVLGGMKG 167 (552)
T ss_pred HHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8888855 566666666667777777777777777777663 2233334455555666667778889
Q ss_pred hhhHHHHHHHHHHH
Q 019094 189 LSWLSILAAVMSFA 202 (346)
Q Consensus 189 l~~~s~~~~~~~~~ 202 (346)
..+.-.+..+.++.
T Consensus 168 V~~TD~iQ~iim~i 181 (552)
T TIGR03648 168 VTWTQVAQYIVLIV 181 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888766554
No 70
>PRK11017 codB cytosine permease; Provisional
Probab=97.41 E-value=0.017 Score=54.58 Aligned_cols=205 Identities=16% Similarity=0.076 Sum_probs=105.4
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhh
Q 019094 64 LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASIS 143 (346)
Q Consensus 64 ~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~ 143 (346)
.++.-+++..++..++...-..+......++ ..++.-+.+..||.++..+..+...+...+=........+..
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k~-------G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~ 111 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-------GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIP 111 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555554444444444444433322 237888999999999999998888777776665566666666
Q ss_pred hHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcc
Q 019094 144 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAT 223 (346)
Q Consensus 144 l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~ 223 (346)
++...+ .+...+.++..++..+..... .+.++++...+........+......+.+. +...+
T Consensus 112 l~~~~~--------------~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~---~g~~~ 173 (404)
T PRK11017 112 VVKATG--------------LDINLLIVLSGLLMTVTAYFG-ISALTILSRIAVPAIALLGGYSVWLAVNDV---GGLDG 173 (404)
T ss_pred HHHHhC--------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---Cchhh
Confidence 665442 111223444445544544433 455555555555544432222221111111 10111
Q ss_pred ccccccccccCcchhhHHHHHhhhhhhhhhh-ccchhHHHhHhhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeec
Q 019094 224 TLTGTTVGVDVSASEKVWRAFQAIGDVAFAY-AFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 302 (346)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf-~~~~~i~~i~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~ 302 (346)
.... .++ .. ..+..++...+-.+ ....+.+...|..|++ |+.......++.+...+...+|......
T Consensus 174 -~~~~--~~~--~~---~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~ 241 (404)
T PRK11017 174 -LKAI--VPA--EP---LDFSAALTLVVGSFISGGTLTADFVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAV 241 (404)
T ss_pred -hhcC--CCC--Cc---ccHHHHHHHHHHHHHHhHhcCCChHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 01 13333333322222 2355778888888877 5544566666666666666667665555
Q ss_pred cCC
Q 019094 303 FGN 305 (346)
Q Consensus 303 fg~ 305 (346)
.|+
T Consensus 242 ~~~ 244 (404)
T PRK11017 242 YGQ 244 (404)
T ss_pred cCC
Confidence 554
No 71
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.30 E-value=0.036 Score=52.10 Aligned_cols=227 Identities=14% Similarity=0.128 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcc
Q 019094 38 WVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRS 117 (346)
Q Consensus 38 ~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~ 117 (346)
|....+++.+-+.|+.... .++.-+++..++..++...-..+......++ | .++.-+.|..||+++
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~----G---l~~~v~sR~~FG~~G 72 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGADT----G---LSAMGSLKLSLGSKG 72 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc----C---cCHHHHHHHHHccch
Confidence 4455555556666554321 4444555555555554444444444443332 2 368889999999999
Q ss_pred hhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHHHH
Q 019094 118 VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAA 197 (346)
Q Consensus 118 ~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~ 197 (346)
..+..+...+...|=-.......++.++.+.+.... ..+...+.++..++..+.+. ...+.++++..++.
T Consensus 73 s~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~---------~~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~ 142 (386)
T TIGR02358 73 SVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFG---------EESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSV 142 (386)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999988888899999999988763111 01112233344444444443 34677777777776
Q ss_pred HHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhh-hccchhHHHhHhhhcCCCccccc
Q 019094 198 VMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFA-YAFSTVLVEIQDTLKSSPPENKS 276 (346)
Q Consensus 198 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs-f~~~~~i~~i~~em~~p~~~~~~ 276 (346)
.......+...+....+. + .....+ . +... ++..++....-. -......+...|..|+| |+
T Consensus 143 ~~~~i~~~~~~~~~~~~~--~--~~~~~~-----~--~~~~---s~~~~~~~~~~~~~swa~~~~DysRy~k~~----~~ 204 (386)
T TIGR02358 143 WLLLIATLWLLVVVFSKA--D--LSELWN-----R--AGDM---SFAVAVELVIAMPLSWLPLIADYTRFARNP----RH 204 (386)
T ss_pred HHHHHHHHHHHHHHHhcc--c--hhhhcC-----C--CCCc---cHHHHHHHHHHHHHHHHHHccchhhhcCCC----cc
Confidence 666543333222222111 1 110000 0 0011 122222211111 12234478888888877 77
Q ss_pred hhhhHHHHHHHHHHHHHhhhhheeeccCCC
Q 019094 277 MKRATAVGVTTTTLFYIMCGVMGYLAFGND 306 (346)
Q Consensus 277 ~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~ 306 (346)
.-+...++..+...+..++|.....+.++.
T Consensus 205 ~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 205 VFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 778888888888888888888776666653
No 72
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.0025 Score=60.94 Aligned_cols=230 Identities=14% Similarity=0.118 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcch
Q 019094 39 VTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSV 118 (346)
Q Consensus 39 ~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~ 118 (346)
.++..|+.+-|+ .|=++|...++|...+++++.....++..|..--.-...+-.-+.|. .|.-++ +..|+..+
T Consensus 38 ~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yflis-~slg~efg 110 (643)
T KOG2083|consen 38 VRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLIS-RSLGPEFG 110 (643)
T ss_pred hhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEEE-eccccccc
Confidence 344445544442 35689999999999999998888887777655444433332222222 233222 34788777
Q ss_pred hhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHHHHH
Q 019094 119 QLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAV 198 (346)
Q Consensus 119 ~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~ 198 (346)
.-+.+...+.+.-.+..|++.+++.+..++...... ..+ . .-.+..++++.++ .-..+|.+.+.++
T Consensus 111 gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~--------~i~-g-i~~vt~~ill~i~----~ag~~w~~k~q~~ 176 (643)
T KOG2083|consen 111 GSIGIIYAFANAVATAMYVVGFAESVAHLFETESKE--------MID-G-IGSVTVLILLAIN----VAGVEWEAKLQIV 176 (643)
T ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHH--------Hhc-c-hhHHHHHHHHHhh----hccchhHHHHHHH
Confidence 788888888888899999999999999998732110 111 1 1122333333333 3446777777766
Q ss_pred HHHHHHHhhhhhhhhhhc-CCC-------CCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCC
Q 019094 199 MSFAYSSIGIGLSIAKVI-GDG-------PHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (346)
Q Consensus 199 ~~~~~~i~~v~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p 270 (346)
..++.++.+. -.+...+ +.+ ..+......+..+|+++..+ ++.-++++.-+.-|.-.=..+..++|+|
T Consensus 177 ll~il~iai~-~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~t---fF~vf~vfFpaatgilaG~nisGdL~~P 252 (643)
T KOG2083|consen 177 LLLILLIAIA-DFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYT---FFSVFAVFFPAATGILAGANISGDLKDP 252 (643)
T ss_pred HHHHHHHHHH-HhhhhhccChhhhcccccccchhhcccCCCCCcCCCCc---eEeeeeeecchhhhhhccccccCCCCCc
Confidence 5554333321 1111111 111 01111111112234443333 3334455555555555567788999999
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhh
Q 019094 271 PPENKSMKRATAVGVTTTTLFYIMCG 296 (346)
Q Consensus 271 ~~~~~~~~~~~~~s~~~~~~~y~~~~ 296 (346)
+ +..|+....+......+|..+.
T Consensus 253 q---~~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 253 Q---KAIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred h---hhcccchhhhhhhhhhhhhhhh
Confidence 5 7889999999999999996543
No 73
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.23 E-value=0.043 Score=53.27 Aligned_cols=156 Identities=12% Similarity=0.072 Sum_probs=90.6
Q ss_pred CCcccccHHHHHHHHHHHhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCcccccHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDP-VTGKRNYTYMDV 108 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~G-il~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~-~~~~~~~~y~~i 108 (346)
...|+.+++...+.+..+.+++. +++.|....+.|+.... ......+.......++.+-.|+..+ +.+ ..|..|.
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~-~~~g~~~~~~~~~~~~~~~~r~~~~~~~~--~~T~~e~ 109 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELW-IAIGLTIGAYINWKFVAPRLRVYTEAAHN--SITLPDF 109 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhcC--CccHHHH
Confidence 34677788888888888777755 46788776677865321 1111112223334445443332111 111 4588888
Q ss_pred HHHHcCCcchh---hHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCC
Q 019094 109 VRASLGGRSVQ---LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (346)
Q Consensus 109 ~~~~~G~~~~~---i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (346)
-+.=||++.+. +..+...+.........+...+..++.+++ .+....+++..++...-.....
T Consensus 110 l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 110 FENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGG 175 (487)
T ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhh
Confidence 88889965433 334444444444455556666777776653 2223334445556666667778
Q ss_pred ccchhhHHHHHHHHHHHH
Q 019094 186 FHKLSWLSILAAVMSFAY 203 (346)
Q Consensus 186 l~~l~~~s~~~~~~~~~~ 203 (346)
++...+...+..+.++..
T Consensus 176 l~av~~TD~iQ~~i~~~~ 193 (487)
T TIGR02121 176 FLAVSWTDFVQGLLMFFA 193 (487)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888889988887766543
No 74
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.05 Score=51.37 Aligned_cols=172 Identities=17% Similarity=0.113 Sum_probs=97.7
Q ss_pred HHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCc
Q 019094 107 DVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNF 186 (346)
Q Consensus 107 ~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l 186 (346)
.+++..||.+++++..+.+.+.+.|=...-.+..++...+. + ..+...+.++..++.+..... ..
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~-------------~~~~~~~ili~g~l~~l~~if-G~ 149 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T-------------GLPVWAGILIIGVLMTLVTIF-GY 149 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C-------------CCcHHHHHHHHHHHHHHHHHH-hH
Confidence 45677899999999999999999999998888888873222 1 334455555555555444443 23
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhcC-CCCCccccccccccccCcchhhHHHHHhhhhhhhhhhcc-chhHHHhH
Q 019094 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIG-DGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAF-STVLVEIQ 264 (346)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~-~~~i~~i~ 264 (346)
+.+..++..++...+......+.. ..+ ....+... ...+.++-++..+++...-.+.. -.-.....
T Consensus 150 r~l~~l~~~a~~~~~~lf~~l~~~----~~~~~~~~~~~~--------~~~~~~~~~fl~a~slv~g~~~sw~~~~aDys 217 (442)
T COG1457 150 RALHKLERIAVPLLLLLFLYLLAL----LFRSKGGLDALW--------VKGPTSPLSFLSALSLVIGSFASWGPYAADYS 217 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhcccccceee--------ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhh
Confidence 444444444444443322222211 112 11111100 00011222344444433322333 34457788
Q ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccCCCC
Q 019094 265 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 307 (346)
Q Consensus 265 ~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~ 307 (346)
+-+|+|++ +|.-.....+......+-..+|.+...+-|+..
T Consensus 218 Ry~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 218 RYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred hhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88888832 255566667777777788888888888887765
No 75
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.04 E-value=0.099 Score=50.98 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=90.0
Q ss_pred CCcccccHHHHHHHHHHHhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCCCcccccHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gi-l~lP~~~~~~G~~~g~~~~~~~~~l~-~~t~~~l~~~~~~~~~~~~~~~~~y~~i 108 (346)
...|+.+++...+.+..+.+|+.. ++.|....+.|+.. . ...+...+. .....++.+-.+.... ...+..|..|.
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~T~~e~ 113 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTE-YNNNALTLPDY 113 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCceeHHHH
Confidence 346788888888888888877766 57888777888643 1 111111111 1122222211111000 00114588888
Q ss_pred HHHHcCCcchh---hHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCC
Q 019094 109 VRASLGGRSVQ---LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (346)
Q Consensus 109 ~~~~~G~~~~~---i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (346)
-++=||++.+. +..+...+.....+...+...+..++.++. .+....+++..++++.....-.
T Consensus 114 l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 114 FTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIGG 179 (502)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhhh
Confidence 88889865433 344444445555555556666777776652 2233334555666666777888
Q ss_pred ccchhhHHHHHHHHHHH
Q 019094 186 FHKLSWLSILAAVMSFA 202 (346)
Q Consensus 186 l~~l~~~s~~~~~~~~~ 202 (346)
++...+...+..+.++.
T Consensus 180 l~aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 180 FLAVSWTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999876654
No 76
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.98 E-value=0.16 Score=46.52 Aligned_cols=145 Identities=16% Similarity=0.114 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCCcccccHHHHHHHHcCC
Q 019094 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCY-RSPDPVTGKRNYTYMDVVRASLGG 115 (346)
Q Consensus 37 s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~-~~~~~~~~~~~~~y~~i~~~~~G~ 115 (346)
+.+..+-+=..++-|+|.+.=|-.-+..||.++.+..++.+++.---.=...-.. -|++ -+|..|++++..||
T Consensus 53 ~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~------G~Si~~i~~~~lG~ 126 (376)
T PF02554_consen 53 NKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHK------GKSIGEIAGKYLGK 126 (376)
T ss_pred chHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCC------CccHHHHHHHHHHH
Confidence 3445566667778899999888777899999999888776666543332222211 2222 34899999999999
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHH
Q 019094 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSIL 195 (346)
Q Consensus 116 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~ 195 (346)
+++.+..+..++.+.....++.....+.+...- +.....++.+...+.+-...-|.-.++...+.+
T Consensus 127 ~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p--------------~~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i 192 (376)
T PF02554_consen 127 RAKKLFLIFIFFLLILVIAVFADVVANTFVNSP--------------WAATSSLLFIPIAILFGLLVYKRGGNLGPATII 192 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--------------hHHHHHHHHHHHHHHHhHhheecCCchHhhHHH
Confidence 999999999998888888877777766664321 111122333333334444433444445666666
Q ss_pred HHHHHH
Q 019094 196 AAVMSF 201 (346)
Q Consensus 196 ~~~~~~ 201 (346)
+++..+
T Consensus 193 ~vvll~ 198 (376)
T PF02554_consen 193 GVVLLL 198 (376)
T ss_pred HHHHHH
Confidence 665443
No 77
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0098 Score=57.92 Aligned_cols=231 Identities=13% Similarity=0.057 Sum_probs=113.1
Q ss_pred hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhHHHHHHHHHHhHHH
Q 019094 55 LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTI 134 (346)
Q Consensus 55 l~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~ 134 (346)
|=+++..-++|+...+..+++...+...|..-+...... ....|.. -|..+.+ ..||-.+.-+.+.+.+.+...|.
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTN-GaV~GGG--aYymISR-sLGpEfGGSIGllFf~anV~~~a 163 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTN-GAVRGGG--AYYMISR-SLGPEFGGSIGLLFFVANVFNCA 163 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CceecCc--eEEEEEc-ccCcccCCeeeehhhHHHHhcch
Confidence 347788888998888877777777776666555443332 3344433 3444444 36676666677777777777777
Q ss_pred HHHHhhhhhhHHHHhhcccccCCCCcccccC-CcchhHH----HHHHHHHHhcCCCccchhhHHHHHHHHHHH--HHHhh
Q 019094 135 GYTITASISMVAVKRSNCFHRHGHHVKCYTS-NNPLMII----FACIQIVLSQIPNFHKLSWLSILAAVMSFA--YSSIG 207 (346)
Q Consensus 135 ~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~ii----~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~--~~i~~ 207 (346)
.++..+-+-+-..+ ..+..+....-.++ -.+|-.+ +..+++.+|++.+ +.++..+.+..++ .++..
T Consensus 164 m~isG~vE~il~nf---G~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGs----alfAkas~i~f~~is~s~~s 236 (945)
T KOG1288|consen 164 MNISGFVEPILDNF---GKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGS----ALFAKASNILFVVISVSLFS 236 (945)
T ss_pred hhhhhhhHHHHHhc---CccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhH----HHHHhhhhhhhhHHHHHHhh
Confidence 77776655544433 32221111111111 2223332 2333444444431 2222222221111 00111
Q ss_pred hhh-hhhhh-cCCCCCccccccc--------cccccCcchhh--------------HHHHHhhhhhhhhhhccchhHHHh
Q 019094 208 IGL-SIAKV-IGDGPHATTLTGT--------TVGVDVSASEK--------------VWRAFQAIGDVAFAYAFSTVLVEI 263 (346)
Q Consensus 208 v~~-~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~--------------~~~~~~~~~~~~fsf~~~~~i~~i 263 (346)
+.. +++.+ .+...+.+..++. ..|.++++-.+ .-++-..++++.-+-.|...=..+
T Consensus 237 i~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnM 316 (945)
T KOG1288|consen 237 IPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANM 316 (945)
T ss_pred hhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCc
Confidence 111 11111 1111111110100 01111111000 002334444444444444445677
Q ss_pred HhhhcCCCccccchhhhHHHHHHHHHHHHHhhhhhe
Q 019094 264 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 299 (346)
Q Consensus 264 ~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~g 299 (346)
..|+|+|+ |.+||-...++.+++++|.++.+.-
T Consensus 317 SgELk~PS---kSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 317 SGELKAPS---KSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred CccccCcc---ccCCccchHHHHHHHHHHHHHHHHh
Confidence 89999996 8899999999999999999776543
No 78
>PRK10484 putative transporter; Provisional
Probab=96.60 E-value=0.56 Score=46.03 Aligned_cols=158 Identities=6% Similarity=-0.003 Sum_probs=85.4
Q ss_pred CCcccccHHHHHHHHHHHhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gi-l~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
-..|+.+++-..+.+..+.++++. ++.|....+.|+.... ......+.....+.++.+-.++.+ ..|..|.-
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~------~~T~~e~l 107 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLKSG------ITTIPDFL 107 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC------CccHHHHH
Confidence 446788888888888887777665 5788776677854311 111111111123334444344333 56889999
Q ss_pred HHHcCCcchhhHHHHHHHHHHhHHHH-HHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH----HHHHHHHHHhcCC
Q 019094 110 RASLGGRSVQLCGLAQYGNLIGVTIG-YTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI----IFACIQIVLSQIP 184 (346)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~-y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i----i~~~~~~pl~~~~ 184 (346)
++-||++.+.+......+........ .+...+..++.++... ..-..+...-.. +..++.......-
T Consensus 108 ~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--------~~~gi~~~~~~~~~~~~~~~i~~~Yt~~G 179 (523)
T PRK10484 108 EERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--------ELLGISYGAAIWLLVWLIGIIGAIYAVFG 179 (523)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--------hhcCCcHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999988877766555443333222 2222333344432100 000111111111 1233444555667
Q ss_pred CccchhhHHHHHHHHHHHH
Q 019094 185 NFHKLSWLSILAAVMSFAY 203 (346)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~~ 203 (346)
.++...+.-.++.+.++..
T Consensus 180 Gl~aV~~TD~iQ~vim~i~ 198 (523)
T PRK10484 180 GLKAVAVSDTINGIGLLIG 198 (523)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8888899999997766553
No 79
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.31 E-value=0.035 Score=53.10 Aligned_cols=112 Identities=17% Similarity=0.030 Sum_probs=68.5
Q ss_pred CcccccHHHHHHHHHHHhhhhhhhHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQL--GWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (346)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~--G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~ 109 (346)
++|+.++++-+..-.+..+....+.+....... ++.-+++..++..++...-..+......++ | .++.-++
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~----G---l~~~v~s 77 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT----G---LPTMVLS 77 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----------HHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc----C---CCchhcc
Confidence 345555555555555555555444444433222 344555555555555544444444444332 2 2678888
Q ss_pred HHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhh
Q 019094 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150 (346)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 150 (346)
+..||.++..+..+...+...|-...-....++.+..+.+.
T Consensus 78 R~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~ 118 (440)
T PF02133_consen 78 RASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGI 118 (440)
T ss_dssp TTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999998888899999999998874
No 80
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.12 E-value=0.2 Score=47.25 Aligned_cols=229 Identities=15% Similarity=0.156 Sum_probs=123.3
Q ss_pred hhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHH--HHHHHhcccCCCCCCCcccccHHHHHHHHcCC-cchhhHHHHH
Q 019094 49 VIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYT--STLLSDCYRSPDPVTGKRNYTYMDVVRASLGG-RSVQLCGLAQ 125 (346)
Q Consensus 49 ~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t--~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~-~~~~i~~~~~ 125 (346)
|--++++.++....-.|+= |....+ +.+..|. ..++.+-.|+.. .+++.|...+=++. +.|++..+..
T Consensus 57 MSaASflGiag~I~~~GYd-G~~Y~i--G~~~Gy~i~~fL~A~~LRk~G------kyT~aD~~a~Ry~~~~~R~~aa~~t 127 (529)
T COG4147 57 MSAASFLGIAGLIFISGYD-GLIYSI--GWTGGYPILLFLIAEYLRKLG------KYTFADFIADRYKSNPARLLAAIGT 127 (529)
T ss_pred cchHhhhchhHhhhhcccc-hHHHHH--HHHHHHHHHHHHHHHHHHhcC------CcchHHHHHHHHhcchhhHHHHHHH
Confidence 3346667777665555532 333322 2222222 223444445443 56888877665554 7777777777
Q ss_pred HHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHH
Q 019094 126 YGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSS 205 (346)
Q Consensus 126 ~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~i 205 (346)
++..+...++.++..+..+.-++. .+...-+++..+++..-..+..++...|.+.+.-+..+...+
T Consensus 128 i~vs~~YliaQmvGaG~li~~l~g--------------v~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~ 193 (529)
T COG4147 128 IIVSFLYLIAQMVGAGLLISLLLG--------------VPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAAL 193 (529)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhC--------------CCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 888888889999999999988873 334455555566666666777888888988888665554333
Q ss_pred hhhhhhhhhhcCC-CCCc---cccccccccc-cCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcCCCccccchhhh
Q 019094 206 IGIGLSIAKVIGD-GPHA---TTLTGTTVGV-DVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRA 280 (346)
Q Consensus 206 ~~v~~~~~~~~~~-~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~p~~~~~~~~~~ 280 (346)
+..++...+...+ .+.- .+.+...-+. ...+.....+-++.++...---.|...+|.+.-....- ++.|.-|++
T Consensus 194 i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTv-p~~k~AR~S 272 (529)
T COG4147 194 IMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTV-PDAKEARKS 272 (529)
T ss_pred HHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEec-CcHHHHHHH
Confidence 3222222222111 1100 0000000000 00111111122222222222223444455554433221 134778899
Q ss_pred HHHHHHHHHHHHHhhhhheee
Q 019094 281 TAVGVTTTTLFYIMCGVMGYL 301 (346)
Q Consensus 281 ~~~s~~~~~~~y~~~~~~gy~ 301 (346)
+..+..++.++|+..-+.|+.
T Consensus 273 v~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 273 VFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999977766654
No 81
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=95.63 E-value=0.84 Score=43.03 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=40.0
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYT 83 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil-~lP~~~~~~G~~~g~~~~~~~~~l~~~t 83 (346)
++++++.|.+++.+..+.+.+|+|=. +..-+.+..|.. +++.+.+.+++..-+
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmat 66 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMAT 66 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHH
Confidence 34455789999999999999999965 688888766643 677777777665544
No 82
>PHA02764 hypothetical protein; Provisional
Probab=95.10 E-value=1.8 Score=38.97 Aligned_cols=97 Identities=7% Similarity=0.005 Sum_probs=63.3
Q ss_pred CCCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHH
Q 019094 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQL--GWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~--G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (346)
...-|..+.+++++.-++.+-+....+.|+=+... |.. .+..+++.++++...+....+.....|. +|. .+.|-
T Consensus 8 SGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPr-AGG-dYVYI- 83 (399)
T PHA02764 8 SGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPL-NGG-DYAYI- 83 (399)
T ss_pred CCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCc-eEEEh-
Confidence 33456778888888555544333233556543333 433 5667777888888888888887776654 343 45674
Q ss_pred HHHHHcCCcchhhHHHHHHHHHHhH
Q 019094 108 VVRASLGGRSVQLCGLAQYGNLIGV 132 (346)
Q Consensus 108 i~~~~~G~~~~~i~~~~~~~~~~g~ 132 (346)
++++||+.+++..+..+......
T Consensus 84 --SRAFGP~~GFLvG~a~WLtl~~G 106 (399)
T PHA02764 84 --RTAFSSKFYTIFGISLWLTYVLS 106 (399)
T ss_pred --HHhhCccHHHHHHHHHHHHHHhh
Confidence 77899999999888877665443
No 83
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=95.04 E-value=0.47 Score=44.17 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=73.9
Q ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhh
Q 019094 61 IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITA 140 (346)
Q Consensus 61 ~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~ 140 (346)
...+|++.++.+.++-..+.+.. -..++..+..+.+.+-..+..+..||+.++.+...+..+.|.-++++.+..+
T Consensus 226 ~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~ 300 (431)
T COG1114 226 TIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVAC 300 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666555554444444433 2222111111112345777889999999999999999999999999999999
Q ss_pred hhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCC
Q 019094 141 SISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIP 184 (346)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~ 184 (346)
+|+.+++.+ ..+++.|.+++.++.+.++.+.
T Consensus 301 aefF~~~~p-------------~~SY~~~v~if~i~sflvan~G 331 (431)
T COG1114 301 AEFFSKLVP-------------KLSYKTWVIIFTLISFLVANLG 331 (431)
T ss_pred HHHHHHhcc-------------cccHHHHHHHHHHHHHHHHHhh
Confidence 999999987 5667778888877776666543
No 84
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.02 E-value=0.32 Score=45.42 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=55.4
Q ss_pred cccHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHh
Q 019094 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181 (346)
Q Consensus 102 ~~~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~ 181 (346)
..-..++++..+|+.++.+..+...+.|+.++++....++|+++.+.+ ..+++.|.++..+..+.++
T Consensus 254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999998864 3445566666655555554
Q ss_pred cC
Q 019094 182 QI 183 (346)
Q Consensus 182 ~~ 183 (346)
..
T Consensus 321 ~~ 322 (378)
T TIGR00796 321 NL 322 (378)
T ss_pred Hh
Confidence 43
No 85
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.95 E-value=0.77 Score=43.48 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=59.9
Q ss_pred cccHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHh
Q 019094 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181 (346)
Q Consensus 102 ~~~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~ 181 (346)
..-..+++++.+|+.+..+..+...+.|+-++++....++|+++++.+ ..+++.|.++.+++.+.++
T Consensus 260 ~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 260 AELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-------------KISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999999986 5667788888877777666
Q ss_pred cC
Q 019094 182 QI 183 (346)
Q Consensus 182 ~~ 183 (346)
.+
T Consensus 327 n~ 328 (427)
T PF05525_consen 327 NL 328 (427)
T ss_pred Hh
Confidence 54
No 86
>PRK15015 carbon starvation protein A; Provisional
Probab=94.94 E-value=0.52 Score=46.40 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCCCcccccHHHHHHHHcCCcchh
Q 019094 41 ASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDC-YRSPDPVTGKRNYTYMDVVRASLGGRSVQ 119 (346)
Q Consensus 41 ~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~-~~~~~~~~~~~~~~y~~i~~~~~G~~~~~ 119 (346)
-+-+=..++-|+|.+-=|..-++.||.++.+..++..++..--.=...-. +.|++ -+|..|++++..||+++.
T Consensus 88 LfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~------GrSig~ia~~~iG~~~~~ 161 (701)
T PRK15015 88 LFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRD------GRSLGELVKEEMGPTAGV 161 (701)
T ss_pred hhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCC------CccHHHHHHHHhhHHHHH
Confidence 34455677889999999988889999999998887666554332222221 12222 348999999999999999
Q ss_pred hHHHHHHHHHHhHHHHHHHhhhhhh
Q 019094 120 LCGLAQYGNLIGVTIGYTITASISM 144 (346)
Q Consensus 120 i~~~~~~~~~~g~~~~y~i~~~~~l 144 (346)
+..+..++.+.....++..++.+.+
T Consensus 162 lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 162 IALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888877777766666665555
No 87
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.12 E-value=3.1 Score=39.66 Aligned_cols=270 Identities=15% Similarity=0.085 Sum_probs=125.7
Q ss_pred CcccCCCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccc
Q 019094 26 LDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLG--WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNY 103 (346)
Q Consensus 26 ~~~~~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G--~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~ 103 (346)
..+-++.+|+=++++-...=....++.+.--+...--+.| |.-+++...+.-.++.. .++-..+- .... ..
T Consensus 46 L~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~---f~~lns~~-G~~y---hI 118 (572)
T KOG2466|consen 46 LKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAI---FLVLNSRP-GSDY---HI 118 (572)
T ss_pred CCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHH---HHHHccCC-Cccc---cc
Confidence 3344456778788888877777777777776766666777 55555554444333332 33322221 1000 12
Q ss_pred cHHHHHHHHcCCcchhh---HHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccc---cCCCCcccccCCcchhH--HHHH
Q 019094 104 TYMDVVRASLGGRSVQL---CGLAQYGNLIGVTIGYTITASISMVAVKRSNCFH---RHGHHVKCYTSNNPLMI--IFAC 175 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i---~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~~~~i--i~~~ 175 (346)
+|.-..+..||-++..+ ..+...+..+|.. .-..++.++.+++....+ .++.-+....++..++. ++-+
T Consensus 119 sFpv~sR~sFGiygS~~pIi~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv 195 (572)
T KOG2466|consen 119 SFPVLSRSSFGIYGSLWPIINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWV 195 (572)
T ss_pred ceeeeeeeehhhhHhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHH
Confidence 45555555566555433 3333333333332 344555555555432221 11111111223333443 3344
Q ss_pred HHHHHhcCCCccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhc
Q 019094 176 IQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYA 255 (346)
Q Consensus 176 ~~~pl~~~~~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~ 255 (346)
+.+|..+.| ..++|++-....+.+...++-.++..+.+.-.-+....+ + ...+.....|.++.++...+-.|.
T Consensus 196 ~s~~~~~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~-~-----st~~gs~~aWa~~~~i~~~~~~fs 268 (572)
T KOG2466|consen 196 ASLPFYWFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDS-K-----STVSGSAHAWAFVRSIMSCIANFS 268 (572)
T ss_pred Hhhheeecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccC-C-----CcccccchhHHHHHHHHHHHhccc
Confidence 455555544 666666666665555443333333333332221111100 0 011222234555443322221111
Q ss_pred -cchhHHHhHhhhcCCCccccchhhhHHH----HHHHHHHHHHhhhhheeeccCCCCC--cccccccC
Q 019094 256 -FSTVLVEIQDTLKSSPPENKSMKRATAV----GVTTTTLFYIMCGVMGYLAFGNDAP--GNFLTGFG 316 (346)
Q Consensus 256 -~~~~i~~i~~em~~p~~~~~~~~~~~~~----s~~~~~~~y~~~~~~gy~~fg~~~~--~~il~n~~ 316 (346)
...|.|...+--|+|. +....-.. .+.++.++=++.+..++-.||.+-- -++++++-
T Consensus 269 tl~~N~pDFsRF~ksp~----a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 269 TLIVNAPDFSRFAKSPN----AIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred hhhccCchhHhhcCCCC----ccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 2456788888888883 33333233 3333333444555566888998753 35666664
No 88
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=93.23 E-value=0.69 Score=46.10 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHHhhhhhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCC
Q 019094 37 TWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (346)
Q Consensus 37 s~~~~~~~li~~~iG~Gil-~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~ 115 (346)
+......=-+..++|.=.+ =+-|..-.+|..-+..++++|++.+..|+.-+...+...--..| -+|.-+.+. .||
T Consensus 116 t~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaG---GsYfmISRs-LGP 191 (1075)
T KOG2082|consen 116 TLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAG---GSYFMISRS-LGP 191 (1075)
T ss_pred eeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC---CeeEEEecc-cCc
Confidence 3433344444556665443 47788888999999999999999998888777665533211111 156555544 788
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHhhhhhhHH-HHh
Q 019094 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVA-VKR 149 (346)
Q Consensus 116 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~-l~~ 149 (346)
-.+..+.+++++-.-.+..-|++..-+.+-. ++|
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P 226 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFP 226 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHHHHcc
Confidence 7777888888888888888898888887755 444
No 89
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=92.64 E-value=7.5 Score=36.83 Aligned_cols=156 Identities=13% Similarity=0.000 Sum_probs=84.4
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHH---HHHHhcccCCCCCCCcccccHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYTS---TLLSDCYRSPDPVTGKRNYTYM 106 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil-~lP~~~~~~G~~~g~~~~~~~~~l~~~t~---~~l~~~~~~~~~~~~~~~~~y~ 106 (346)
+.++..|.+++.+.-..+-+|+|=+ +..-+.+-.|.. +++.+.+.+++..-|. ..|...+|..++..+-|--.-.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 3456778999999999999999965 588888766644 6777777777655443 3444444433321111111222
Q ss_pred HHHHHHcCCcchhhHHHHHHHHHH-hHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCC
Q 019094 107 DVVRASLGGRSVQLCGLAQYGNLI-GVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (346)
Q Consensus 107 ~i~~~~~G~~~~~i~~~~~~~~~~-g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (346)
-+.+..-.||...+..+...+.+. ..+....-.+.+.++.-++ .+ .+..-+...++..+..+..
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~--------------~~-~~~~gi~la~l~~~VI~GG 201 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG--------------IP-PLVTGIVLALLVALVIFGG 201 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC--------------Cc-HHHHHHHHHHHHHHHHHcc
Confidence 333333345555555533322222 1343344444444443331 11 2233344445555566677
Q ss_pred ccchhhHHHHHHHHHHH
Q 019094 186 FHKLSWLSILAAVMSFA 202 (346)
Q Consensus 186 l~~l~~~s~~~~~~~~~ 202 (346)
++....++..-+..+-.
T Consensus 202 i~rIa~v~~~vVPfMA~ 218 (452)
T COG1115 202 IKRIAKVSSKVVPFMAI 218 (452)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 77777776666555443
No 90
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=92.18 E-value=12 Score=36.38 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCCcccccHHHHHHHHcCCcc
Q 019094 39 VTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCY-RSPDPVTGKRNYTYMDVVRASLGGRS 117 (346)
Q Consensus 39 ~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~-~~~~~~~~~~~~~y~~i~~~~~G~~~ 117 (346)
+-.+-+=..++-|+|.+-=|---++.||.+|.+.+++.+++.---.=.++-.. .|++ -.|..|++++..|+..
T Consensus 55 ~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~------G~Si~~ia~~~lG~~a 128 (575)
T COG1966 55 WVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHG------GKSIGEIAGKYLGRTA 128 (575)
T ss_pred hhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccC------CccHHHHHHHHhhhhH
Confidence 34455556678899999999999999999999988877776554333333222 1222 3389999999999999
Q ss_pred hhhHHHHHHHHHHhHHHHHHHhhhh
Q 019094 118 VQLCGLAQYGNLIGVTIGYTITASI 142 (346)
Q Consensus 118 ~~i~~~~~~~~~~g~~~~y~i~~~~ 142 (346)
+.+..+...+.......++......
T Consensus 129 ~~~~~~~~l~iliiv~Avfa~vv~~ 153 (575)
T COG1966 129 KVFFLLLALILLILVGAVFAAVIAK 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888887666655555444444433
No 91
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=90.76 E-value=10 Score=36.18 Aligned_cols=229 Identities=13% Similarity=0.108 Sum_probs=108.5
Q ss_pred cHHHHHHHHHHHhhhhhhhHHHHHH-HHhC--hhHHHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCcccccHHHHHHHH
Q 019094 37 TWVTASAHIITAVIGSGVLSLAWAI-AQLG--WVAGPAVLMAFSFITY-YTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (346)
Q Consensus 37 s~~~~~~~li~~~iG~Gil~lP~~~-~~~G--~~~g~~~~~~~~~l~~-~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~ 112 (346)
......+.+...-+|+|=|-.|-.. +++| |..+.+..++.++.-- .+...+.+.. .++++++++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~-----------g~~~~l~~r- 76 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVG-----------GGVDSLSTP- 76 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCHHHHhhh-
Confidence 3567788889999999999988664 4566 8888888877766433 3333333321 157777776
Q ss_pred cCCcchhhHHHHHHHHHHh--------HHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCC
Q 019094 113 LGGRSVQLCGLAQYGNLIG--------VTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIP 184 (346)
Q Consensus 113 ~G~~~~~i~~~~~~~~~~g--------~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~ 184 (346)
.||+.+.+......+. .| ..++|=.. +.++++ + . ..+...+.++++.+.+.+++-|
T Consensus 77 v~~~f~~~f~~~i~l~-IGP~~aiPRtaavsfEm~----i~p~~~---------~-~-~~~~~ifs~iFF~i~~~l~l~p 140 (439)
T PRK15433 77 IGKVAGVLLATVCYLA-VGPLFATPRTATVSFEVG----IAPLTG---------D-S-ALPLFIYSLVYFAIVILVSLYP 140 (439)
T ss_pred cchHHHHHHHHHHHHH-HhhccccCCccccchhhe----eeccCC---------c-c-cHHHHHHHHHHHHHHHHHHcCh
Confidence 4455444443332221 11 11111111 111111 0 0 0111223444555555555433
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhH---HHHHhhhhhhhhhhccchhHH
Q 019094 185 NFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKV---WRAFQAIGDVAFAYAFSTVLV 261 (346)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~fsf~~~~~i~ 261 (346)
=|-+..+..+-+...+..+++.++..+.+.... ..++ ++. +. +.+....+ ++.+.+++...|+-....
T Consensus 141 -~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~--~~~~-~~~-y~-~~~f~~Gf~eGY~TMDalaal~Fg~iii~--- 211 (439)
T PRK15433 141 -GKLLDTVGNFLAPLKIIALVILSVAAIVWPAGS--ISTA-TEA-YQ-NAAFSNGFVNGYLTMDTLGAMVFGIVIVN--- 211 (439)
T ss_pred -hhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCc-chh-hh-hhhHHHHHHhhHHHHHHHHHHHHHHHHHH---
Confidence 233334444444444443333333334333221 1111 010 10 01111122 244566666666643333
Q ss_pred HhHhh-hcCCCccccchhhhHHHHHHHHHHHHHhhhhheeec
Q 019094 262 EIQDT-LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 302 (346)
Q Consensus 262 ~i~~e-m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~ 302 (346)
.+.+. .+++++.+|...++-.++...-.++|...+..|...
T Consensus 212 ~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s 253 (439)
T PRK15433 212 AARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDS 253 (439)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33332 555522223344455566666778888888888654
No 92
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=89.94 E-value=13 Score=34.52 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=51.0
Q ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhc-
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ- 182 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~- 182 (346)
+..|..++-+||+..+...+...+.+.....+-....+..++.+. ..+...+..+..+..+.+.+
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------------g~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF--------------GIPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCcHHHHHHHHHHHHHHHHH
Confidence 567777888899988888888888888887777777777776554 22344455555544444444
Q ss_pred -CCCccchhhHHHH
Q 019094 183 -IPNFHKLSWLSIL 195 (346)
Q Consensus 183 -~~~l~~l~~~s~~ 195 (346)
.++.+.+..+...
T Consensus 109 ~~~~y~~~E~~~~~ 122 (358)
T PF01566_consen 109 SSGGYRRLERILKV 122 (358)
T ss_pred HhccchHHHHHHHH
Confidence 4555555544443
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=89.32 E-value=6.7 Score=37.35 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=55.4
Q ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcC
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 183 (346)
-.....+..+|++++.+..+.+.+.|+-++++-...+++.+++..+ .+++.+.++..++.++++.+
T Consensus 266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHh
Confidence 4667788899999999999999999999999999999999998763 34566777777777777654
No 94
>PRK00701 manganese transport protein MntH; Reviewed
Probab=88.94 E-value=22 Score=34.05 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=33.8
Q ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHH
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~ 148 (346)
+..|+.++-+||+..++..+...+.+.+..+.-....+..++.++
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999988877777767777777766666666666544
No 95
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=87.08 E-value=4.1 Score=40.05 Aligned_cols=246 Identities=13% Similarity=0.112 Sum_probs=121.8
Q ss_pred cccccHHHHHHHHHHHhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITY-YTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~G-il~lP~~~~~~G~~~g~~~~~~~~~l~~-~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
.|+..++-..+.+..+-+|++ ++++|.-..+.|.-.....+. +++.. ..+++..-...+.+ ..+-.|--+
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~--~l~~~~~~~~~f~Pvf~~~~------v~~~~eYl~ 115 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWN--ALLSVLLLGWIFIPVFYRLG------VTTMYEYLE 115 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHH--HHHHHHhhheEEEEEEEecC------eeehhHHHH
Confidence 566666666666666666655 478998888888543222211 11111 11111111222222 223444456
Q ss_pred HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchh
Q 019094 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (346)
+-||+..+.+..+.+.++.+--...+...-+-.+++... .+...-.++..+++........++..-
T Consensus 116 ~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------------~~~~l~~~~~~~ic~~YT~~GGlkaVi 181 (585)
T KOG2349|consen 116 KRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------------INLYLIVVILGLICVFYTALGGLKAVI 181 (585)
T ss_pred HHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------------cCceeehHHHHHHHHHHHHhcCeeEEE
Confidence 668888777777777766665555555555555555442 112222233344444445566788888
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhcC------CCCCccccccc-cccccCcchhhHHHHHhhh-hhhhhhhccchhHHH
Q 019094 191 WLSILAAVMSFAYSSIGIGLSIAKVIG------DGPHATTLTGT-TVGVDVSASEKVWRAFQAI-GDVAFAYAFSTVLVE 262 (346)
Q Consensus 191 ~~s~~~~~~~~~~~i~~v~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~fsf~~~~~i~~ 262 (346)
++=.+..+.++.-.+.+.+....+... ....+.+.... .+..|.+....+|.++.+- ....-.|..+++.
T Consensus 182 ~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~-- 259 (585)
T KOG2349|consen 182 WTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLI-- 259 (585)
T ss_pred EhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHH--
Confidence 888888887776433333332221111 00001111111 1223334444567654333 3333444445544
Q ss_pred hHhhhcCCCccccchhhhHHHHHHHHHHH---HHhhhhheeeccC
Q 019094 263 IQDTLKSSPPENKSMKRATAVGVTTTTLF---YIMCGVMGYLAFG 304 (346)
Q Consensus 263 i~~em~~p~~~~~~~~~~~~~s~~~~~~~---y~~~~~~gy~~fg 304 (346)
+++-+.-|+. |+-+++.........+. +...|+.-|..|-
T Consensus 260 VQR~lsl~sl--k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 260 VQRYLSLPSL--KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred HhHHhccccH--HHhhhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 5555555532 66666665544444444 4455666666664
No 96
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=85.87 E-value=33 Score=32.70 Aligned_cols=231 Identities=15% Similarity=0.157 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHH-HHhC--hhHHHHHHHHHHHHHHHHHH-HHHhcccCCCCCCCcccccHHHHHHHHc
Q 019094 38 WVTASAHIITAVIGSGVLSLAWAI-AQLG--WVAGPAVLMAFSFITYYTST-LLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (346)
Q Consensus 38 ~~~~~~~li~~~iG~Gil~lP~~~-~~~G--~~~g~~~~~~~~~l~~~t~~-~l~~~~~~~~~~~~~~~~~y~~i~~~~~ 113 (346)
.....+.+...-+|+|=|-.|-.. +++| |..+.+..++.++.--.-+. .+.+. + . ++++++++ -
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~-~---------~-~~~~l~~~-v 72 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS-G---------G-GIEDLASR-V 72 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc-C---------C-CHHHHhcc-c
Confidence 456677888899999999988654 4555 88888888887775444332 22221 1 1 57777776 3
Q ss_pred CCcchhhHHHHHHHHHHh--------HHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCC
Q 019094 114 GGRSVQLCGLAQYGNLIG--------VTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (346)
Q Consensus 114 G~~~~~i~~~~~~~~~~g--------~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (346)
||+.+.+......+. .| ..++|=... .++++ . ....+...+.++++.+.+.+++-|
T Consensus 73 ~~~f~~if~~~i~l~-IGP~~aiPRtaa~sfe~~i----~p~~~-----~-----~~~~~~~ifs~iFF~i~~~l~~~p- 136 (427)
T PF05525_consen 73 GPKFALIFTILIYLS-IGPLFAIPRTAAVSFEMGI----APFFP-----E-----NSNISLLIFSIIFFAITYLLSLNP- 136 (427)
T ss_pred CcHHHHHHHHHHHHH-HHhcccCcchhhhhHHHhh----hccCC-----c-----ccccchhhhhHHHHHHHHHHHhch-
Confidence 454444444332221 11 111111111 11111 0 003334445556666666665544
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhH---HHHHhhhhhhhhhhccchhHHH
Q 019094 186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKV---WRAFQAIGDVAFAYAFSTVLVE 262 (346)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~fsf~~~~~i~~ 262 (346)
=|-+..+..+-+...+..++++++..+.+..... ..+.... .+.+....+ ++.+.+++...|+-.... .
T Consensus 137 ~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~--~~~~~~y---~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~---~ 208 (427)
T PF05525_consen 137 SKIVDRIGKFLTPILLILLAILIIKGIFSPIGPP--QAPSGAY---ASNPFFKGFLEGYQTMDALAALAFGIIIIN---A 208 (427)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cccchhh---hhhHHHHHHHHHHhhhhHHHHHHHHHHHHH---H
Confidence 2333444544444444433333433343332211 1110000 011111112 133455555555442222 2
Q ss_pred hHhh-hcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 263 IQDT-LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 263 i~~e-m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
+.+. .+++++.+|...++-.++...-.++|...+..|...-+
T Consensus 209 i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~ 251 (427)
T PF05525_consen 209 IRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSG 251 (427)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 2222 23332122333444556666677888888888876554
No 97
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=84.07 E-value=36 Score=31.66 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=92.6
Q ss_pred cccccHHHHHHHHHHHhhhh-hhhHHHHHHHHhChhHHHHHHHHHHH-HHHHHHHHHHh----cccCCCCCCCcccccHH
Q 019094 33 KRTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSF-ITYYTSTLLSD----CYRSPDPVTGKRNYTYM 106 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~-Gil~lP~~~~~~G~~~g~~~~~~~~~-l~~~t~~~l~~----~~~~~~~~~~~~~~~y~ 106 (346)
.|+.+..--.++...+-+|+ +.++=|.+-...|+.. .++..+-+ ..+.+.-.+.+ ..|+++ ..+..
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~n------AltI~ 109 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREYN------ALTIN 109 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhC------CeeHH
Confidence 34444444444555555554 4456677766777443 33333322 22333334444 334444 44777
Q ss_pred HHHHHH-cCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCC
Q 019094 107 DVVRAS-LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (346)
Q Consensus 107 ~i~~~~-~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 185 (346)
|+-++= -++...++.++..++...+...+..+..+..++.... .++..-+++++..+..-..+..
T Consensus 110 D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g--------------idY~tgL~ifa~~V~iYt~fGG 175 (473)
T COG4145 110 DLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG--------------IDYTTGLLIFAVSVAIYTAFGG 175 (473)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC--------------CCchhhHHHHHHHHHHHHhhcc
Confidence 777665 4667788888899999999999999999999988773 3444555666666666666777
Q ss_pred ccchhhHHHHHHHHHHH
Q 019094 186 FHKLSWLSILAAVMSFA 202 (346)
Q Consensus 186 l~~l~~~s~~~~~~~~~ 202 (346)
++.....-.++-+.++.
T Consensus 176 FRAvvltD~IQG~vmli 192 (473)
T COG4145 176 FRAVVLTDTIQGLVMLI 192 (473)
T ss_pred eeeeehHHHHHHHHHHH
Confidence 88777777776655554
No 98
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=80.22 E-value=42 Score=31.93 Aligned_cols=238 Identities=12% Similarity=0.067 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhhhhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCCCcccccHHHHHHHHcCCc
Q 019094 40 TASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCY--RSPDPVTGKRNYTYMDVVRASLGGR 116 (346)
Q Consensus 40 ~~~~~li~~~iG~Gil-~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~--~~~~~~~~~~~~~y~~i~~~~~G~~ 116 (346)
.-++..+++.+|-|=. -.||...+.|-. +.++.-++..+..---.+++|-. |+.+ . ....+|+.++. ++
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~-~--~~~~a~~~l~~----~~ 84 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGR-K--NAVGAFRKLAP----KK 84 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcC-C--ChhHHHHHhcc----Cc
Confidence 4445556777776643 589887766644 33333333333333333444432 2211 0 11346765554 34
Q ss_pred chhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccC--CCCc-c---cccCCcchhHH---HHHHHHHHhcCCCcc
Q 019094 117 SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRH--GHHV-K---CYTSNNPLMII---FACIQIVLSQIPNFH 187 (346)
Q Consensus 117 ~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~--~~~~-~---~~~~~~~~~ii---~~~~~~pl~~~~~l~ 187 (346)
....+.+...+..+..+.-|.++.|=.+..+......... .++. . ...+....... ...++......|.++
T Consensus 85 ~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~ 164 (439)
T COG0733 85 KWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVK 164 (439)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456666667777777777888877777666553221111 1100 0 00111111111 111222222334433
Q ss_pred c-hhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccccccc--ccccCcchhhHHHHHhhhhhhhhhhccchhHHHhH
Q 019094 188 K-LSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT--VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (346)
Q Consensus 188 ~-l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~ 264 (346)
+ ....+.+-....+...++.++..+. .+ ....|.. +.+|+..-.+...+..+++...|+.+--..+.-.+
T Consensus 165 ~GIEk~~kimMP~Lfvl~i~Lvi~~~t----Lp---GA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitY 237 (439)
T COG0733 165 KGIEKANKIMMPLLFVLFIILVIRAVT----LP---GAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITY 237 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHc----Cc---cHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 5566666666655544444443332 11 1112221 22333333333456688888888887655555555
Q ss_pred hh-hcCCCccccchhhhHHHHHHHHHHHHHhhh
Q 019094 265 DT-LKSSPPENKSMKRATAVGVTTTTLFYIMCG 296 (346)
Q Consensus 265 ~e-m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~ 296 (346)
.. ++++ +++.+........-+.+-.+.|
T Consensus 238 sSYL~k~----~~l~~sa~~v~~~n~~~s~lAG 266 (439)
T COG0733 238 SSYLSKK----SDLVSSALSIVLLNTLISLLAG 266 (439)
T ss_pred HhhcCcc----cchhhhHHHHHHHHHHHHHHHH
Confidence 54 5554 6777766655555555544444
No 99
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=76.96 E-value=48 Score=32.41 Aligned_cols=47 Identities=15% Similarity=0.057 Sum_probs=39.1
Q ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhh
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 150 (346)
...++-+...||++...+....++..+..+++-.+..+...-.+-.+
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 57777788999999988888889999999988888888887766543
No 100
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=75.05 E-value=88 Score=30.72 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHhhhhh-hhHHHHHHHHhChhHHHH----HHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 37 TWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPA----VLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 37 s~~~~~~~li~~~iG~G-il~lP~~~~~~G~~~g~~----~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
|..+-.+..++..+|-| +.-.|+-..+-|-..-++ .++++++=..+.=..+++..+... ...|.+++..
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~------~~~~~~~~p~ 79 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGP------IGAWKRLCPI 79 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTS------HHHS-HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccc
Confidence 34566778889999998 667998876666322222 222233333333344455444432 3345555543
Q ss_pred HcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHH
Q 019094 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (346)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~ 148 (346)
.- -+.+...+..+..++-|.+..+..+..+.
T Consensus 80 ~~------giG~~~~~~~~~~~~yy~vi~~w~l~Y~~ 110 (523)
T PF00209_consen 80 FK------GIGYAMVLISFLIAIYYSVIVAWALYYFF 110 (523)
T ss_dssp HH------THHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred cc------ccccccccccccccccccccccccccccc
Confidence 21 23444444445555555555555554443
No 101
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=71.89 E-value=93 Score=29.60 Aligned_cols=73 Identities=11% Similarity=-0.031 Sum_probs=51.0
Q ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcC
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 183 (346)
+..|..++-|+|+..++..+...+....+.++-....+-.++.++. .+..+-.+++++..+.+...
T Consensus 78 ~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~--------------ip~~~g~iItav~~~iil~~ 143 (416)
T COG1914 78 GLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG--------------IPLIIGAVITAVDVLIILLL 143 (416)
T ss_pred cHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------ChHHHHHHHHHHHHHHHHHh
Confidence 5777788889999999999998888888888888888888887762 22333344555555555455
Q ss_pred CCccchh
Q 019094 184 PNFHKLS 190 (346)
Q Consensus 184 ~~l~~l~ 190 (346)
++.+.+.
T Consensus 144 ~~~r~~E 150 (416)
T COG1914 144 KGYRLLE 150 (416)
T ss_pred cchHHHH
Confidence 5344443
No 102
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=70.22 E-value=1.2e+02 Score=30.15 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhhhhh-HHHHH-HHHhCh---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHH
Q 019094 38 WVTASAHIITAVIGSGVL-SLAWA-IAQLGW---VAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (346)
Q Consensus 38 ~~~~~~~li~~~iG~Gil-~lP~~-~~~~G~---~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~ 112 (346)
-++..+..++..++.|=+ -.||- +++.|+ ++=++++++.|+=..|-=..+++-+|... ..-+..|+-.
T Consensus 84 K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~------~gvw~ri~P~- 156 (629)
T KOG3659|consen 84 KTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGC------IGVWRRIAPA- 156 (629)
T ss_pred HHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccc------hhHHHHhCHH-
Confidence 446666666666666554 37766 455553 34445566666655565555666554422 2245555554
Q ss_pred cCCcchhhHHHHHHHHHH
Q 019094 113 LGGRSVQLCGLAQYGNLI 130 (346)
Q Consensus 113 ~G~~~~~i~~~~~~~~~~ 130 (346)
+|..+..++-++++...+
T Consensus 157 l~Gigy~i~~i~~~~~~y 174 (629)
T KOG3659|consen 157 LKGIGYAICLIAFFVGLY 174 (629)
T ss_pred hcCCchhhhHHHHHHHHH
Confidence 555555566665555544
No 103
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=64.71 E-value=59 Score=30.90 Aligned_cols=85 Identities=9% Similarity=0.008 Sum_probs=56.7
Q ss_pred HHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccch
Q 019094 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (346)
+..+|.++..++.+++.++-|.+.+++....-..+..+.+. + .. ...+-+ ..++..++..+.+++.+
T Consensus 300 ~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~-------~----~~-~~~~ri-~~i~~~~~G~~~~~~~v 366 (416)
T PF01235_consen 300 STVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG-------K----KA-IWIYRI-LFIAMVFIGAVIDLDLV 366 (416)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------c----eE-EEeeee-hhhhhhhhhhcccchhH
Confidence 33578899999999999999999999999999999887721 0 10 111111 22333344445677888
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 019094 190 SWLSILAAVMSFAYSSIG 207 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~~ 207 (346)
+.++-+...++.+.-++.
T Consensus 367 W~~~Di~~~lmai~Nlia 384 (416)
T PF01235_consen 367 WDLADIANGLMAIPNLIA 384 (416)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888877766533333
No 104
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=57.03 E-value=1.7e+02 Score=27.51 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=29.6
Q ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHH
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~ 148 (346)
+..|+.++-++|+.++...+...+...+....-....+.-++.++
T Consensus 65 ~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 65 DLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred CHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999998877666555555555555555555555555554
No 105
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=48.72 E-value=30 Score=21.44 Aligned_cols=30 Identities=27% Similarity=0.425 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhhheeeccCCC
Q 019094 277 MKRATAVGVTTTTLFYIMCGVMGYLAFGND 306 (346)
Q Consensus 277 ~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~ 306 (346)
+..+..+++.+.+++-.+.|..-|.+||..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 344566677777777777788888999975
No 106
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=47.05 E-value=1.7e+02 Score=24.38 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=37.0
Q ss_pred CCCcccccHHHHHHHHHHHhh-hhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhccc
Q 019094 30 GRAKRTGTWVTASAHIITAVI-GSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYR 92 (346)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~i-G~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~ 92 (346)
++..+..-|.++...+++.+- =+| +-.-|+.-.-+.|++.+++.++...++++++.+-..
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLlsg---itaff~~nA~~~GlItlll~a~vgGfamy~my~y~y 149 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALLSG---ITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAY 149 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHHHH---HHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444456666666555431 122 223355556777889999999988888888877543
No 107
>CHL00020 psbN photosystem II protein N
Probab=45.85 E-value=27 Score=21.27 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHhhhhheeeccCCC
Q 019094 280 ATAVGVTTTTLFYIMCGVMGYLAFGND 306 (346)
Q Consensus 280 ~~~~s~~~~~~~y~~~~~~gy~~fg~~ 306 (346)
+..+++.+.+++..+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 445666666777777777778899975
No 108
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=38.73 E-value=83 Score=25.32 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=48.1
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhcccccc
Q 019094 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRL 345 (346)
Q Consensus 275 ~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (346)
|+..|.+-...-...++..++|+..-..+-++.+..=+.+ -.+|+.....+++.+|-+.++..+..|
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fyS----lHSwlGl~t~~l~~lQ~~~Gf~~f~~P 110 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYS----LHSWVGLAAVILYPLQLVLGISVYLLP 110 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcccc----HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6677888888888888888888866555554432221222 258899999999999999988877766
No 109
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=37.29 E-value=31 Score=21.10 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhheeeccCCCC
Q 019094 281 TAVGVTTTTLFYIMCGVMGYLAFGNDA 307 (346)
Q Consensus 281 ~~~s~~~~~~~y~~~~~~gy~~fg~~~ 307 (346)
..++..+.+++-.+.|...|.+||...
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 345556666666677777788998643
No 110
>TIGR00909 2A0306 amino acid transporter.
Probab=37.18 E-value=3.6e+02 Score=25.37 Aligned_cols=47 Identities=13% Similarity=-0.051 Sum_probs=40.1
Q ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhh
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 150 (346)
...+..+...|+++..++.+...+..+++..+.....+..+.....+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46677777888999999999999999999999999999998887654
No 111
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=35.94 E-value=94 Score=24.70 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=46.2
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhcccccc
Q 019094 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRL 345 (346)
Q Consensus 275 ~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (346)
|+.+|.+-...-...++..++|+..-..+.++..-+=+.++ .+|+.....+++.++.+.++-.+..|
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~Sl----HSwlGl~t~~L~~lQ~~~G~~~f~~P 103 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSL----HSWLGIGTISLFGLQWLFGFVTFWFP 103 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccH----HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66677788888888888888888555555444321112222 58888888888888888887666665
No 112
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=33.14 E-value=3.6e+02 Score=27.22 Aligned_cols=58 Identities=9% Similarity=0.048 Sum_probs=35.9
Q ss_pred hhhhhHHHHHH--HHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCC
Q 019094 51 GSGVLSLAWAI--AQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (346)
Q Consensus 51 G~Gil~lP~~~--~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~ 115 (346)
..++......+ .+..+...++.+++..+++..+.++..++-.. |. .....+.+.++|-
T Consensus 368 v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~--P~-----~~~~~~sqli~g~ 427 (624)
T PF03169_consen 368 VLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGIN--PV-----SGLNILSQLIFGL 427 (624)
T ss_pred HHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCC--cc-----hhhhHHHHHHHHH
Confidence 34556666666 45556666777777777888888888876652 22 2455555655553
No 113
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.54 E-value=1.3e+02 Score=23.82 Aligned_cols=67 Identities=6% Similarity=-0.007 Sum_probs=45.6
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhcccccc
Q 019094 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRL 345 (346)
Q Consensus 275 ~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (346)
|+..|.+-...-...++-..+|+..-..+.++.. ..|+- .-.+|+.....+++.++.+.++..+..|
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~---~~hf~-SlHswlGl~t~~L~~lQ~~~G~~~f~~P 103 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQANG---YPDMY-SLHSWCGILTFVLYFLQWLIGFSFFLFP 103 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHccccC---CCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556667888888888888888766555544322 12221 1357888888888889998888887666
No 114
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=27.95 E-value=3e+02 Score=26.50 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=40.0
Q ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhh
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 150 (346)
.+.+..+...+++...++.+......+++..+.....+..+..+-.+
T Consensus 275 p~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 275 PFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred chhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 46777788788999999999999999999999999998888777654
No 115
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=24.18 E-value=6.4e+02 Score=24.14 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=33.0
Q ss_pred HcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHh
Q 019094 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (346)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~ 149 (346)
.+|.++..++.+++.++.+.+.+++.......+..++.
T Consensus 329 ~~g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~ 366 (425)
T TIGR00835 329 GLGSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKG 366 (425)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36778899999999999999999999999888887753
No 116
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=23.89 E-value=6.9e+02 Score=24.41 Aligned_cols=90 Identities=13% Similarity=-0.008 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhH--HHHHHHHHHhc
Q 019094 105 YMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI--IFACIQIVLSQ 182 (346)
Q Consensus 105 y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i--i~~~~~~pl~~ 182 (346)
|.-+.++.-|+ .+.++|...++...+....-+-.....+..-++.... .+ .+.....+ +...++.-.+.
T Consensus 164 ~pl~g~~~~g~-~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~G-i~-------~~~~~~~~ii~~~~~i~~~S~ 234 (485)
T PF02028_consen 164 YPLLGDRINGP-LGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFG-IP-------NTFGLQIIIIIVITVIFTISA 234 (485)
T ss_dssp HHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-------STHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCcccCc-chhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC-CC-------CchHHHHHHHHHHHHHHHHHH
Confidence 44444444444 4677887766666655544444444444444432111 01 01111222 22333444444
Q ss_pred CCCcc-chhhHHHHHHHHHHHH
Q 019094 183 IPNFH-KLSWLSILAAVMSFAY 203 (346)
Q Consensus 183 ~~~l~-~l~~~s~~~~~~~~~~ 203 (346)
...++ ..+++|-+-+...+.+
T Consensus 235 ~~Gl~kGIk~LS~~n~~l~~~l 256 (485)
T PF02028_consen 235 VSGLDKGIKRLSNINVYLAFAL 256 (485)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 55553 3667776666555543
No 117
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=23.45 E-value=7.9e+02 Score=24.95 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHhhhhhhhH-HHHHHHHhC
Q 019094 37 TWVTASAHIITAVIGSGVLS-LAWAIAQLG 65 (346)
Q Consensus 37 s~~~~~~~li~~~iG~Gil~-lP~~~~~~G 65 (346)
+..+-.+..++..+|-|=+= .|+...+-|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nG 68 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNG 68 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 67788889999999988765 998755555
No 118
>PLN02680 carbon-monoxide oxygenase
Probab=23.26 E-value=5e+02 Score=22.55 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=47.2
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhcccccc
Q 019094 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRL 345 (346)
Q Consensus 275 ~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (346)
|+.+|.+-...-...++..++|+..-..+.++ .++ .|+- .-.+|+.....+++.+|.+.++-.+..|
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~-~nfy-SlHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGI-DNFY-SLHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCc-cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66778888888888888888888654444333 222 2221 1258888889999999999888777666
No 119
>PRK09950 putative transporter; Provisional
Probab=23.05 E-value=4.3e+02 Score=25.95 Aligned_cols=67 Identities=6% Similarity=-0.022 Sum_probs=37.9
Q ss_pred HHHHHHHhhhhhhHHHHhhcccccC-CCCcccccCCcchhHHHHHHHHHHhcCCC-ccchhhHHHHHHH
Q 019094 132 VTIGYTITASISMVAVKRSNCFHRH-GHHVKCYTSNNPLMIIFACIQIVLSQIPN-FHKLSWLSILAAV 198 (346)
Q Consensus 132 ~~~~y~i~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~ii~~~~~~pl~~~~~-l~~l~~~s~~~~~ 198 (346)
.+..+.+...|.....+...+.... +++++....+..|.+....+...+..... ++.++..+.++-+
T Consensus 411 l~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~al 479 (506)
T PRK09950 411 IMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTAL 479 (506)
T ss_pred HHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4444666666666666665444321 12233345566777777666666666554 7766666655533
No 120
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=22.53 E-value=4.3e+02 Score=23.02 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=52.0
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhcccccc
Q 019094 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRL 345 (346)
Q Consensus 275 ~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (346)
|+..|.+....=.+.+...++|+..-..+-+... ..|+- .-.+|+....-+++.+|-..+|--+.+|
T Consensus 85 k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~Nfy-SLHSWlGl~~v~ly~~Q~v~GF~tfl~p 151 (245)
T KOG1619|consen 85 KKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFY-SLHSWLGLCVVILYSLQWVFGFFTFLFP 151 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---cccee-eHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999987777666554 22221 1268988889999999999888777766
No 121
>PLN02810 carbon-monoxide oxygenase
Probab=22.12 E-value=2.2e+02 Score=24.66 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=47.7
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhcccccc
Q 019094 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRL 345 (346)
Q Consensus 275 ~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (346)
|+.+|.+-...-...++..++|+..-..|-++..-+=+.++ .+|+....-.++.+|-+.++-.+..|
T Consensus 76 k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySL----HSWlGl~tv~Lf~lQw~~Gf~~Fl~P 142 (231)
T PLN02810 76 KEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSL----HSWLGIGIISLYGIQWIYGFIVFFFP 142 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeH----HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56678888888888888888888665555544321112222 58888888888899988888776666
No 122
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.97 E-value=2e+02 Score=23.87 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=47.9
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhcccccc
Q 019094 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRL 345 (346)
Q Consensus 275 ~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (346)
|+.+|.+-...-...++..++|+..-..+-++. .+-+.+. =.+|+....-.++.+|-+.++..+..|
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlyS--lHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYS--LHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cccchhh--HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666788888888888888888886666665443 2222111 258888888888888988888777665
No 123
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=21.35 E-value=6.9e+02 Score=24.34 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHH
Q 019094 105 YMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (346)
Q Consensus 105 y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~ 148 (346)
-.+.+++.+|.+. |++.++..+.++|..-+.+...+..+..-.
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~a 317 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGA 317 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3556788899988 999999999999988877777777765544
No 124
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=21.12 E-value=6e+02 Score=24.55 Aligned_cols=126 Identities=10% Similarity=-0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcC----CcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccc
Q 019094 79 ITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG----GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFH 154 (346)
Q Consensus 79 l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G----~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~ 154 (346)
+..|+.+.+.-..-.+-...+++..+.++..+-++| ++.+.++|+..++...+....-+-.....+..-+.....-
T Consensus 96 ~~aWaiY~l~ala~aY~~~rk~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi 175 (453)
T TIGR00842 96 IHAWAIYALVGLALAYFHVRKGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINAGLSALFGI 175 (453)
T ss_pred HHHHHHHHHHHHHHHHhheecCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q ss_pred cCCCCcccccCCcchhHHHHHHHHHHhcCCCc-cchhhHHHHHHHHHHHHHHhhhhh
Q 019094 155 RHGHHVKCYTSNNPLMIIFACIQIVLSQIPNF-HKLSWLSILAAVMSFAYSSIGIGL 210 (346)
Q Consensus 155 ~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~i~~v~~ 210 (346)
++ .......+++...+++-.+....+ |..|++|.+-+...+.+++.+...
T Consensus 176 ~~------~~~~~~~ii~~i~~~f~~S~~~Gl~kGIk~LS~~n~~l~~~ll~fvli~ 226 (453)
T TIGR00842 176 PD------SFWLQALIILCVTALACISVASGVGKGIKILSNINMALAFLLLLFVLIV 226 (453)
T ss_pred CC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 125
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=20.64 E-value=6.5e+02 Score=25.11 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHHHcCCcchhhHHHHH
Q 019094 67 VAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQ 125 (346)
Q Consensus 67 ~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~~~G~~~~~i~~~~~ 125 (346)
+.|++.++++++....|...+.-..|..++..|. ..+.-.++++..+|+.++++-..+
T Consensus 55 VlGvlSLi~WtLtlIVTiKYv~~vlRADN~GEGG-ilsL~aL~~~~~~~~~~~l~~~g~ 112 (627)
T COG3158 55 VLGVLSLIIWTLTLIVTIKYVLFVLRADNNGEGG-ILSLMALARRAAPRRTALLIILGL 112 (627)
T ss_pred eeeHHHHHHHHHHHHHHHhhheeEEecCCCCCch-hhhHHHHHHhhcCCCchhhhhHHH
Confidence 5688999999998888888888888765543333 568999999988877776555443
Done!