Query 019094
Match_columns 346
No_of_seqs 115 out of 1228
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 1E-15 3.6E-20 144.8 18.2 248 31-306 5-253 (445)
2 3gia_A Uncharacterized protein 99.5 2.4E-13 8.1E-18 128.6 19.2 240 32-304 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.3 7.2E-11 2.5E-15 113.5 19.2 251 29-306 6-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.5 2.8E-06 9.7E-11 81.1 17.3 156 32-204 23-179 (501)
5 3dh4_A Sodium/glucose cotransp 97.5 0.0099 3.4E-07 57.0 19.7 155 32-207 18-174 (530)
6 2xq2_A Sodium/glucose cotransp 96.7 0.078 2.7E-06 51.5 17.3 154 33-207 48-203 (593)
7 2a65_A Leutaa, Na(+):neurotran 88.7 16 0.00055 34.5 18.9 256 37-306 10-309 (519)
8 3gia_A Uncharacterized protein 44.5 1.3E+02 0.0044 27.0 9.9 47 104-150 259-305 (444)
9 3l1l_A Arginine/agmatine antip 35.0 2.4E+02 0.0083 25.1 14.1 48 103-150 260-307 (445)
10 3hd7_A Vesicle-associated memb 9.4 2E+02 0.0069 19.7 2.5 25 276-300 67-91 (91)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.68 E-value=1e-15 Score=144.83 Aligned_cols=248 Identities=11% Similarity=-0.012 Sum_probs=165.9
Q ss_pred CCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
+++|+.+.++.++..+++++|+|++..|...++.|.. +++.+++.+++....+..+.|..++.+. .| .+.+.++
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~ 78 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-PG----GSYAYAR 78 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-TT----THHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-CC----CchhhHH
Confidence 3467889999999999999999999999988888864 7888888999999999999998876653 22 3555678
Q ss_pred HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchh-HHHHHHHHHHhcCCCccch
Q 019094 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-ii~~~~~~pl~~~~~l~~l 189 (346)
+.+||+.+++..+..++........+....+++++.+++.. ..+...+. .+..++++.....+..+..
T Consensus 79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~in~~g~~~~ 147 (445)
T 3l1l_A 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------KDPWVLTITCVVVLWIFVLLNIVGPKMI 147 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----------GSHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----------cccHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 89999999999999999888888888888888877655420 00001111 1122222233334455555
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcC
Q 019094 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS 269 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~ 269 (346)
..++.+.+...+...+.+++..+... ...... +.+ . ......+.++..++....|+|.|++.+..+.+|+||
T Consensus 148 ~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~~~~---~~~--~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~ 219 (445)
T 3l1l_A 148 TRVQAVATVLALIPIVGIAVFGWFWF-RGETYM---AAW--N--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKN 219 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTC-CCCCCC---CC---------------HHHHHHHHHHTTTTTTHHHHGGGGBSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-Chhhcc---ccc--C--ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 55555444433332222222222111 111000 111 0 011112456788899999999999999999999999
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhhhheeeccCCC
Q 019094 270 SPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 306 (346)
Q Consensus 270 p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~ 306 (346)
| +|+.+|++..+..++.++|++..+......+.+
T Consensus 220 p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 220 P---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred c---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 9 388999999999999999998888766666543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.55 E-value=2.4e-13 Score=128.61 Aligned_cols=240 Identities=8% Similarity=0.040 Sum_probs=161.7
Q ss_pred CcccccHHHHHHHHHHHhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 32 AKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~Gil~lP~~-~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
++|+.+.++.++..++.++|+|++..|.. ....|. .+++.+++.+++....+..+.|..++.+.. | ...+.++
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~-G----g~y~~~~ 77 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSN-A----GPIAFIH 77 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCT-T----THHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-C----cHHHhHH
Confidence 46788999999999999999999987744 556676 688888899999999999999988776532 2 3456678
Q ss_pred HHcCCcc-hhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchh---HHHHHHHHHHhcCCCc
Q 019094 111 ASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM---IIFACIQIVLSQIPNF 186 (346)
Q Consensus 111 ~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~---ii~~~~~~pl~~~~~l 186 (346)
+.+||+. ...+.+..++........+....++++..+++. .+..++. .+..++++.....+..
T Consensus 78 ~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~in~~g~ 144 (444)
T 3gia_A 78 KAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA-------------PINTFNIAITEIGIVAFFTALNFFGS 144 (444)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCchHHHHHHHHHHHHHHHHHHHHhH
Confidence 8899962 334467777777777778888888888877641 1112221 1222222333334455
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhh
Q 019094 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (346)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e 266 (346)
+....++.+.....+...+..++..+... .. + +.. ++ ..+..+.+++.++....|+|.|++.+....+|
T Consensus 145 ~~~~~~~~~~~~~~i~~~~~~ii~~~~~~-~~---~-~~~-----~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e 213 (444)
T 3gia_A 145 KAVGRAEFFIVLVKLLILGLFIFAGLITI-HP---S-YVI-----PD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEH 213 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CG---G-GTS-----CC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Ch---h-hcC-----CC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55555555544443332222222222221 10 1 110 11 11234557888888999999999999999999
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccC
Q 019094 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (346)
Q Consensus 267 m~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 304 (346)
+||| +|+.+|++..+..++.++|.+..+......+
T Consensus 214 ~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 214 IENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp BSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999 3789999999999999999988776555554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.32 E-value=7.2e-11 Score=113.53 Aligned_cols=251 Identities=10% Similarity=-0.009 Sum_probs=144.9
Q ss_pred cCCCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHhccc--CCCCCCCcccccH
Q 019094 29 DGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYR--SPDPVTGKRNYTY 105 (346)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~-~~t~~~l~~~~~--~~~~~~~~~~~~y 105 (346)
+++.+|+.+.++.++..++.++| +.++|. .+..|.. +++..++.+++. ...+..+.|... ..+ . | ..
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~-G----G~ 75 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-E-G----GV 75 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---------CH
T ss_pred cCccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-C-C----Ch
Confidence 34556889999999999999986 577775 4566643 344444444443 347778888877 665 3 3 34
Q ss_pred HHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCc--chh-HHHHHHHHHHhc
Q 019094 106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNN--PLM-IIFACIQIVLSQ 182 (346)
Q Consensus 106 ~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~-ii~~~~~~pl~~ 182 (346)
...+++.+||+.+++..+..++.......++....++.+..++. .++ ..... .+. .+..++++.+..
T Consensus 76 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~------~~~~~~~~~~~~~~~~~~~~~in 145 (511)
T 4djk_A 76 FAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WPA------LNEDPITKTIAALIILWALALTQ 145 (511)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CGG------GTSCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc------cccCcHHHHHHHHHHHHHHHHHH
Confidence 45568889999999999998888877777777777766654421 000 00111 111 122222333334
Q ss_pred CCCccchhhHHHHHHHH-HHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHH
Q 019094 183 IPNFHKLSWLSILAAVM-SFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLV 261 (346)
Q Consensus 183 ~~~l~~l~~~s~~~~~~-~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~ 261 (346)
.+..+....++.+.... .+...++++...+.....+++...+.. .+ +..+.....+.+.++...+|+|.|.+...
T Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~a~~G~e~~~ 221 (511)
T 4djk_A 146 FGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMD---SK-TFFPDFSKVGTLVVFVAFILSYMGVEASA 221 (511)
T ss_dssp HTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC----------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGT
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---cc-ccCCCcccchHHHHHHHHHHHHhhHHHHH
Confidence 45566666665554333 111111222222222212111100000 00 00111111234456777899999999999
Q ss_pred HhHhhhcCCCccccchhhhHHHHHHHHHHHHHhhhhheeeccCCC
Q 019094 262 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 306 (346)
Q Consensus 262 ~i~~em~~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~ 306 (346)
.+.+|+|||+ |+.+|++..+..++.++|.+..+......+++
T Consensus 222 ~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 222 THVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp GGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 9999999994 89999999999999999998888776666654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.54 E-value=2.8e-06 Score=81.11 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=100.0
Q ss_pred CcccccHHHHHHHHHHHhhhhhhhHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ-LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~-~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
++|+.++++-+..-.+..++.+-+.+...+.. .++.-+++..++..++......+......+.. .++..+.+
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G-------l~~~v~~R 95 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG-------INFTVAAR 95 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC-------CCHHHHTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC-------CChhhhhH
Confidence 34566777777777777777777776665544 23455555555555555444444444443322 26899999
Q ss_pred HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchh
Q 019094 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (346)
..||+++..+..+...+.++|-...-....++.++.++.... . ..+.....+++.++.++.. ....+.++
T Consensus 96 ~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g--------~~~~~v~~~i~~~l~~~~~-~~G~~~i~ 165 (501)
T 2jln_A 96 MPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G--------FTNLPLWIVIFGAIQVVTT-FYGITFIR 165 (501)
T ss_dssp TTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--------CCCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--------cchHHHHHHHHHHHHHHHH-HhCHHHHH
Confidence 999999999999999999998888888889999888764211 0 1011223444555555555 44577777
Q ss_pred hHHHHHHHHHHHHH
Q 019094 191 WLSILAAVMSFAYS 204 (346)
Q Consensus 191 ~~s~~~~~~~~~~~ 204 (346)
++..++....+..+
T Consensus 166 ~~~~~~~p~~~i~~ 179 (501)
T 2jln_A 166 WMNVFASPVLLAMG 179 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766555433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.49 E-value=0.0099 Score=56.98 Aligned_cols=155 Identities=10% Similarity=0.117 Sum_probs=88.8
Q ss_pred CcccccHHHHHHHHHHHhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094 32 AKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~Gi-l~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~ 110 (346)
..|+.+++...+.+..+.+++.. ++.|......|+......+.. ++.....+..+....++.+ ..|..|.-+
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~------~~T~~e~l~ 90 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG------IYTIPEFVE 90 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHTT------CCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHcC------CccHHHHHH
Confidence 35777888888888877777655 689988888887643222211 1111122233333333332 569999999
Q ss_pred HHcCCcchhhHHHHHHH-HHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccch
Q 019094 111 ASLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l 189 (346)
+-||++.+.+..+...+ +.+..+.+.+...+..++.++. ++...-+++..+++........++..
T Consensus 91 ~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~aV 156 (530)
T 3dh4_A 91 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAV 156 (530)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHHTTC------C
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999888777765443 2333333444445555665542 22233344455555666677789999
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 019094 190 SWLSILAAVMSFAYSSIG 207 (346)
Q Consensus 190 ~~~s~~~~~~~~~~~i~~ 207 (346)
.+...+..+.++...+++
T Consensus 157 ~~TD~iQ~~im~~g~~~v 174 (530)
T 3dh4_A 157 VWTDVIQVFFLVLGGFMT 174 (530)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988776543333
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=96.67 E-value=0.078 Score=51.46 Aligned_cols=154 Identities=9% Similarity=0.113 Sum_probs=87.2
Q ss_pred cccccHHHHHHHHHHHhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094 33 KRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (346)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gi-l~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~ 111 (346)
.|+.+++...+.+..+.+++.. ++.|....+.|+......+.. .+.....+..+..-.++.+ ..|..|.-++
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~------~~T~~e~l~~ 120 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG------IYTIPEFVEK 120 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHHTT------CCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC------CCCcHHHHHH
Confidence 5677888888888777666555 689987778886533222111 1111112223333333332 5689999999
Q ss_pred HcCCcchhhHHHHHHH-HHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccchh
Q 019094 112 SLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (346)
Q Consensus 112 ~~G~~~~~i~~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~ 190 (346)
=||++.+.+..+...+ ..+......+...+..++.++. ++....+++.++++........++...
T Consensus 121 Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999887777655443 3333334444455666766653 222333444555556666778889988
Q ss_pred hHHHHHHHHHHHHHHhh
Q 019094 191 WLSILAAVMSFAYSSIG 207 (346)
Q Consensus 191 ~~s~~~~~~~~~~~i~~ 207 (346)
+.-.+..+.++...+++
T Consensus 187 ~TD~iQ~iiml~~~l~v 203 (593)
T 2xq2_A 187 WTDVIQVFFLVLGGFMT 203 (593)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888887776544333
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=88.72 E-value=16 Score=34.45 Aligned_cols=256 Identities=11% Similarity=0.027 Sum_probs=116.3
Q ss_pred cHHHHHHHHHHHhhhhh-hhHHHHHHHHhChh----HHHHHHHHHHHHHHHHHHHHHhccc-CCCCCCCcccccHHHHHH
Q 019094 37 TWVTASAHIITAVIGSG-VLSLAWAIAQLGWV----AGPAVLMAFSFITYYTSTLLSDCYR-SPDPVTGKRNYTYMDVVR 110 (346)
Q Consensus 37 s~~~~~~~li~~~iG~G-il~lP~~~~~~G~~----~g~~~~~~~~~l~~~t~~~l~~~~~-~~~~~~~~~~~~y~~i~~ 110 (346)
|-..-++..+++.+|-| +-=.||-..+-|-. +=++.++++++=..+.=..+.|-.. +.+ .+-.+..+
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r-------~~~i~a~~ 82 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-------GTTPAIFY 82 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-------CSHHHHHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC-------CCHHHHHH
Confidence 44566777789999988 45799997777632 1122222222222233333333111 111 01222223
Q ss_pred HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccc----cCCCCc-cc-----------ccCC--------
Q 019094 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFH----RHGHHV-KC-----------YTSN-------- 166 (346)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~----~~~~~~-~~-----------~~~~-------- 166 (346)
++.+++....+.+...+..+..++-|.++.+-.+..+...+... +....+ .+ .++.
T Consensus 83 ~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g 162 (519)
T 2a65_A 83 LLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPIL 162 (519)
T ss_dssp HHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBC
T ss_pred HhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCccccc
Confidence 33333223445666666666666777777666665555432111 000000 00 0001
Q ss_pred --cchhH---HHHHHHHHHhcCCCc-cchhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCcccccccc--ccccCcchh
Q 019094 167 --NPLMI---IFACIQIVLSQIPNF-HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT--VGVDVSASE 238 (346)
Q Consensus 167 --~~~~i---i~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 238 (346)
++..+ +.+.++..++..|.+ +....++.+-....+..+++.++..+.- ++ +......|.. +.+|+..-.
T Consensus 163 ~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltL--pG-p~~~A~~Gl~~~~~Pd~s~L~ 239 (519)
T 2a65_A 163 KPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLL--ET-PNGTAADGLNFLWTPDFEKLK 239 (519)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-TTEEHHHHHHHHHSCCTTSTT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHhcCCHHHhC
Confidence 12222 223334445567777 5566666666554443333333322211 11 0000111211 123333322
Q ss_pred hHHHHHhhhhhhhhhhccchhHHHhHhh-hcCCCccccchhhhHHHHHHHHHHHHH-----hhhhheeeccCCC
Q 019094 239 KVWRAFQAIGDVAFAYAFSTVLVEIQDT-LKSSPPENKSMKRATAVGVTTTTLFYI-----MCGVMGYLAFGND 306 (346)
Q Consensus 239 ~~~~~~~~~~~~~fsf~~~~~i~~i~~e-m~~p~~~~~~~~~~~~~s~~~~~~~y~-----~~~~~gy~~fg~~ 306 (346)
+..-...|.+.+.||.+.-.-..-.+.. +|+. ++..|........-+..-+ +++..||.++|.+
T Consensus 240 ~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~----~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 240 DPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD----QDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp CHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTT----SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCC----cChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 2224568888888998875555555544 4443 6666665554444444433 2333455444533
No 8
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=44.49 E-value=1.3e+02 Score=27.04 Aligned_cols=47 Identities=6% Similarity=0.025 Sum_probs=38.6
Q ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhh
Q 019094 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150 (346)
Q Consensus 104 ~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 150 (346)
...+..+..+|+++..++.+...+..+++..+.....+..+..+..+
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56777888888888888888888888888888888888888777664
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=35.03 E-value=2.4e+02 Score=25.07 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=42.0
Q ss_pred ccHHHHHHHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhh
Q 019094 103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150 (346)
Q Consensus 103 ~~y~~i~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 150 (346)
..+.++.+..+|+++..++.+...+..+++..++....++.+..+..+
T Consensus 260 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp CTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 468899999999999999999999999999999999998888777654
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=9.41 E-value=2e+02 Score=19.69 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=15.9
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhee
Q 019094 276 SMKRATAVGVTTTTLFYIMCGVMGY 300 (346)
Q Consensus 276 ~~~~~~~~s~~~~~~~y~~~~~~gy 300 (346)
+++..+.++.+++.++|.++..++|
T Consensus 67 n~K~~iii~~iv~~il~ii~~~~~~ 91 (91)
T 3hd7_A 67 NLKMMIILGVICAIILIIIIVYFST 91 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455566677777777777766554
Done!