BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019095
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q97DU2|Y3379_CLOAB Putative nucleotidase CA_C3379 OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=CA_C3379 PE=3 SV=1
Length = 192
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 30/168 (17%)
Query: 183 FFKIWNCSRDEADLRVHEFFKTP------YFKTGIHPLPGAQK-------ALHKLSRYCN 229
+FK +D +H+ P +++ + L QK + KLS+ N
Sbjct: 27 YFKTSITEKDATQYYIHKILNVPLEEYNEFYEKYKYKLHSEQKLRKDVKSVITKLSQNNN 86
Query: 230 LSVVTSRQHVIKDHTIEWIEKHYPGLFQEIHFGNHFALAGKSRPKSDICRSLGAKVLIDD 289
+ VT+R+ + T ++ K +EI + + F L + K R L + I+D
Sbjct: 87 IFFVTARERDLTILTYSYLRK------KEIPYDSLFILG--THHKVPTARQLNCDLFIED 138
Query: 290 NPRYAIECAEVGIKVLLFD-YENSYPWCKTDSVHQHPLVTKVHNWEEV 336
N A+E ++ G KVLL D Y N P + + + +NW+EV
Sbjct: 139 NYDNALELSKAGFKVLLIDTYYNRKPLNQN--------IIRFYNWDEV 178
>sp|Q5HR07|53DR_STAEQ Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=SERP0388 PE=3 SV=1
Length = 179
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 146 VAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEADLRVHEFFKTP 205
+A+D+DEVL + + A+ + + +R LN + + K E + V + K P
Sbjct: 6 IAIDMDEVLADTLGAVVKAVNERADLNIKMESLNG----KKLKHMIPEHEGLVMDILKEP 61
Query: 206 YFKTGIHPLPGAQKALHKLSRYCNLSVVTSRQHVIKD--HTIEWIEKHYPGLFQEIHFGN 263
F + +P AQ+ + +L+ + ++ + T+ V EW+ +++P L +
Sbjct: 62 GFFRNLDVMPHAQEVVKQLNEHYDIYIATAAMDVPTSFHDKYEWLLEYFPFLDPQ----- 116
Query: 264 HFALAGKSRPKSDICRSLGAKVLIDDNPR 292
HF G+ + A LIDDNP+
Sbjct: 117 HFVFCGRK-------NIILADYLIDDNPK 138
>sp|Q8CTG7|53DR_STAES Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_0505 PE=1 SV=1
Length = 179
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 146 VAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEADLRVHEFFKTP 205
+A+D+DEVL + + A+ + + +R LN + + K E + V + K P
Sbjct: 6 IAIDMDEVLADTLGAVVKAVNERADLNIKMESLNG----KKLKHMIPEHEGLVMDILKEP 61
Query: 206 YFKTGIHPLPGAQKALHKLSRYCNLSVVTSRQHVIKD--HTIEWIEKHYPGLFQEIHFGN 263
F + +P AQ+ + +L+ + ++ + T+ V EW+ +++P L +
Sbjct: 62 GFFRNLDVMPHAQEVVKQLNEHYDIYIATAAMDVPTSFHDKYEWLLEYFPFLDPQ----- 116
Query: 264 HFALAGKSRPKSDICRSLGAKVLIDDNPR 292
HF G+ + A LIDDNP+
Sbjct: 117 HFVFCGRK-------NIILADYLIDDNPK 138
>sp|P54480|YQFW_BACSU Putative nucleotidase YqfW OS=Bacillus subtilis (strain 168)
GN=yqfW PE=3 SV=1
Length = 193
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 93/199 (46%), Gaps = 25/199 (12%)
Query: 146 VAVDVDEVL---GNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEADLRVHEFF 202
+ +D+D + FV LNR ++L+ S+++ Y+ K+ N +++E +++
Sbjct: 4 LGIDIDGTITAQDTFVPYLNR----SFNLSISLNDMTDYDLTKLLNITQEEFWDWMNQNE 59
Query: 203 KTPYFKTGIHPLPGAQKALHKLSRYCNLSVVTSRQHVIKDHTIEWIEKHYPGLFQEIHFG 262
Y + + A+++L L L +T+R+ + D T EW ++ Q IH+
Sbjct: 60 AIIYKEALL--AQHAKQSLDLLKEEHKLIYITARRTHLTDITYEWFDR------QNIHY- 110
Query: 263 NHFALAGKSRPKSDICRSLGAKVLIDDNPRYAIECA-EVGIKVLLFDYENSYPWCKTDSV 321
+H L G K + ++ + +D+ A+ A E GI V+LF+ + Y DS
Sbjct: 111 DHIELVG-GHHKVEAVKNHNIDLFFEDHHGNAMMIAKEAGIPVILFN--SPYNQLPIDSN 167
Query: 322 HQHPLVTKVHNWEEVEQQL 340
+ +V+NW E Q +
Sbjct: 168 -----IIRVNNWLEAVQWM 181
>sp|Q95JB9|NCTR1_MACFA Natural cytotoxicity triggering receptor 1 OS=Macaca fascicularis
GN=NCR1 PE=2 SV=1
Length = 306
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 158 VSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEADLRVHEFFKTPYFKTGIHPLPGA 217
+ +N A RYS +Y ++W+ D DL V E + TP +HP P
Sbjct: 85 IPDMNSRKAGRYSC--------IYRVGELWSERSDLLDLVVTEMYDTPTL--SVHPGPEV 134
Query: 218 QKALHKLSRYCNLSVVTSRQHVIKDHTIEWIEKHYPGLFQEIHFG 262
K++ YC L TS ++K+ +++ Y + E G
Sbjct: 135 TSG-EKVTFYCRLDTATSMFLLLKEGRSRDVQRSYGKVQAEFPMG 178
>sp|Q82LU9|CCRA2_STRAW Crotonyl-CoA reductase OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=ccrA2 PE=1 SV=1
Length = 445
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
Query: 261 FGNHFALAGKSRP--------KSDICRSLGAKVLIDDN 290
+ FALAG + P K+DICRS+GA+ +ID N
Sbjct: 240 YATQFALAGGANPICVVSSEQKADICRSMGAEAIIDRN 277
>sp|A1W165|TRUD_CAMJJ tRNA pseudouridine synthase D OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=truD PE=3 SV=1
Length = 372
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 140 LHGKIVVAVDVDEVL-GNFVSAL-NRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEA-DL 196
LHGK + V + E L F S L NR+++ R L+H +++ E +I+ S++EA +L
Sbjct: 184 LHGKKMKNVKMKEFLISAFQSELFNRYLSKRVELSHFANDFSEKELIQIYKISKEEAKEL 243
Query: 197 RVHE-FFK 203
+ E FFK
Sbjct: 244 KKQEQFFK 251
>sp|Q53865|CCR_STRCU Crotonyl-CoA reductase OS=Streptomyces collinus GN=ccr PE=1 SV=1
Length = 447
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
Query: 261 FGNHFALAGKSRP--------KSDICRSLGAKVLIDDN 290
+ FALAG + P K++ICRS+GA+ +ID N
Sbjct: 242 YATQFALAGGANPICVVSSPQKAEICRSMGAEAIIDRN 279
>sp|P52441|UL49_HHV6U Protein U33 OS=Human herpesvirus 6A (strain Uganda-1102) GN=U33
PE=3 SV=1
Length = 470
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 159 SALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEADLRVHEFFKTPYFKTGIHPLPGAQ 218
L F+ ++ LN V+E EFF IW R E L F G+ L
Sbjct: 38 CVLTMFLTNKKFLNKEVTEKFYNEFFAIWLRCRPETRLITKRLFNKMVMTKGLFVLLA-- 95
Query: 219 KALHKLSRYCNLSVVTSRQHVIKDHTIEWIE 249
L+ + R C + + S + K TI+W++
Sbjct: 96 -YLYFVYRQCKVLELLS---LYKLKTIKWVD 122
>sp|P38757|NEM1_YEAST Nuclear envelope morphology protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NEM1 PE=1 SV=1
Length = 446
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 202 FKTPYFKTGIHPLPGAQKALHKLSRYCNLSVVTSRQHVIKDHTIEWIEKHYPGLFQEIHF 261
+T YF IH P L K+S++ +L + T+ D I+W+E +P F + ++
Sbjct: 290 IRTLYF---IHKRPYCDLFLTKVSKWYDLIIFTASMKEYADPVIDWLESSFPSSFSKRYY 346
>sp|Q6YYZ1|LDL2_ORYSJ Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa
subsp. japonica GN=Os08g0143400 PE=2 SV=1
Length = 763
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 28 LMSCAIR--SDPICKGFHSNVTNNSS--DINIINSSSNGFLRFKGKVNN 72
+ SC R SDP+C G +S++ SS D +I+ S N L F G+ N
Sbjct: 526 IQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATN 574
>sp|A1AT66|RNH_PELPD Ribonuclease H OS=Pelobacter propionicus (strain DSM 2379) GN=rnhA
PE=3 SV=1
Length = 163
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 214 LPGAQKALHKLSRYCNLSVVTSRQHVIKDHTIEWIE 249
L A +AL L+R C +++VT Q+++K T EWI+
Sbjct: 64 LTAAMEALRLLTRPCRITIVTDSQYLVKGMT-EWIQ 98
>sp|P55585|Y4NM_RHISN Uncharacterized protein y4nM OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02290 PE=4 SV=1
Length = 516
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 245 IEWIEKHYPGLFQEIHFGNHFALAGKSRPKSDICRSLGAKVLIDDNPRYAIECAEVGIKV 304
++W+++ +P F AG S I + VL+ D ++ + E G++V
Sbjct: 166 LQWLQESFP---------EGFIYAGDSAADLPIWEAASGAVLVGDGVKFESKLREAGVEV 216
Query: 305 LLFDYENSYP---WCKTDSVHQ 323
E S+P W +HQ
Sbjct: 217 RTLSPEKSHPVKDWLSELRIHQ 238
>sp|Q09624|PKD1_CAEEL Location of vulva defective 1 OS=Caenorhabditis elegans GN=lov-1 PE=1
SV=4
Length = 3284
Score = 32.0 bits (71), Expect = 7.0, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 15/136 (11%)
Query: 52 DINIINSSSNGFLRFKGKVNNGSLILRGCFDSTNRVNAGA----------DQKVGAFAPP 101
D+N +N +SN F+ +NN L G + N G D +FA
Sbjct: 2108 DLNTLNKTSNYFVTAGNLINNTGLFFIGIGKRNSSTNTGNSSDIVNYGQYDSMQWSFARS 2167
Query: 102 QRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSAL 161
+ + A ++GC + +S+ N G + S G V D + V A
Sbjct: 2168 VPMDYQVAAVSKGCYFY-----QKTSDVFNSEGMYPSDGQGMQFVNCSTDHLTMFSVGAF 2222
Query: 162 NRFIADRYSLNHSVSE 177
N I +S N++V+E
Sbjct: 2223 NPTIDADFSYNYNVNE 2238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,526,366
Number of Sequences: 539616
Number of extensions: 5803347
Number of successful extensions: 14906
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 14710
Number of HSP's gapped (non-prelim): 198
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)