Query 019098
Match_columns 346
No_of_seqs 159 out of 1858
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:51:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 1.7E-10 5.7E-15 89.8 6.9 72 256-327 34-106 (137)
2 3b5d_A Multidrug transporter E 98.7 4.1E-08 1.4E-12 73.6 8.3 70 256-325 34-104 (110)
3 3b5d_A Multidrug transporter E 98.5 1.8E-06 6.2E-11 64.6 10.9 67 82-154 34-102 (110)
4 2i68_A Protein EMRE; transmemb 98.4 7E-07 2.4E-11 69.3 7.3 67 82-154 34-102 (137)
5 4aps_A DI-OR tripeptide H+ sym 51.9 1.2E+02 0.0041 27.4 11.1 12 268-279 407-418 (491)
6 2l2t_A Receptor tyrosine-prote 49.2 18 0.00062 21.4 3.1 14 316-329 27-40 (44)
7 1pw4_A Glycerol-3-phosphate tr 49.2 1.4E+02 0.0048 26.3 22.1 14 40-53 119-132 (451)
8 3l1l_A Arginine/agmatine antip 43.6 1.8E+02 0.0061 26.0 15.5 43 286-328 388-430 (445)
9 2ks1_B Epidermal growth factor 41.2 28 0.00094 20.6 3.0 6 320-325 32-37 (44)
10 2jp3_A FXYD domain-containing 35.7 13 0.00045 24.0 1.1 17 309-325 23-39 (67)
11 2jo1_A Phospholemman; FXYD1, N 26.7 47 0.0016 21.7 2.5 15 310-324 23-37 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.09 E-value=1.7e-10 Score=89.77 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeeeeh-hhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhccCC
Q 019098 256 YSAFFGLTFSTVVHTFGLHMKGPVYTAIF-KPLSVAIAAIMSFIFLGESLHLGSVIGGVIICVGFYVVIWGKA 327 (346)
Q Consensus 256 ~~~~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~~~~ge~~~~~~~iG~~li~~G~~~~~~~~~ 327 (346)
..+++++++++++|.+++++.+++.+..+ ..+.|+++.+++++++||+++..+++|+++|++|+++..+.++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 46667888999999999999999999998 8999999999999999999999999999999999998876543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.72 E-value=4.1e-08 Score=73.60 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeeeeh-hhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhcc
Q 019098 256 YSAFFGLTFSTVVHTFGLHMKGPVYTAIF-KPLSVAIAAIMSFIFLGESLHLGSVIGGVIICVGFYVVIWG 325 (346)
Q Consensus 256 ~~~~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~~~~ge~~~~~~~iG~~li~~G~~~~~~~ 325 (346)
..++++..+++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||++|..+++|..+|+.|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35566778999999999999999999888 89999999999999999999999999999999999888654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.47 E-value=1.8e-06 Score=64.56 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=60.1
Q ss_pred HHHHHH-HHHHHHHHHhhcccchhhhhhh-hcccHHHHHHHHHHHhhhcccccccCcchhhhHHHHHhhhhhhee
Q 019098 82 LLSLIG-SLLRILGYTGIAYSSPTLASMI-SNLTPGFTFTLAIIFRMEKLALRSLGTWAKIIGTVVSVSGAMLVV 154 (346)
Q Consensus 82 ~~g~~~-~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~lla~~~~~e~~~~~~~~s~~~~~~i~l~~~Gv~~~~ 154 (346)
..+.+. ..+..++..++++.|.+.+..+ ..+.|+++.+++++++||+++. .+++|+.+.+.|++.+.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~------~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL------PAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHh
Confidence 345555 8889999999999999999988 8999999999999999999954 49999999999998886
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.39 E-value=7e-07 Score=69.27 Aligned_cols=67 Identities=22% Similarity=0.218 Sum_probs=51.2
Q ss_pred HHHHHH-HHHHHHHHHhhcccchhhhhhh-hcccHHHHHHHHHHHhhhcccccccCcchhhhHHHHHhhhhhhee
Q 019098 82 LLSLIG-SLLRILGYTGIAYSSPTLASMI-SNLTPGFTFTLAIIFRMEKLALRSLGTWAKIIGTVVSVSGAMLVV 154 (346)
Q Consensus 82 ~~g~~~-~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~lla~~~~~e~~~~~~~~s~~~~~~i~l~~~Gv~~~~ 154 (346)
+.+++. .+++.++..++++.|++.+..+ .++.|++++++++++++|+++.+ +++|+++.++|++++.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 355555 8999999999999999999998 89999999999999999999555 9999999999999886
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=51.90 E-value=1.2e+02 Score=27.38 Aligned_cols=12 Identities=0% Similarity=-0.139 Sum_probs=5.7
Q ss_pred HHHHHhccCCce
Q 019098 268 VHTFGLHMKGPV 279 (346)
Q Consensus 268 ~~~~a~~~~~~~ 279 (346)
.+....+..++.
T Consensus 407 ~~~~~~~~~p~~ 418 (491)
T 4aps_A 407 GLSVTTKLAPKA 418 (491)
T ss_dssp HHHHHHHHTTTT
T ss_pred HHHHHHHhCCHH
Confidence 344445555544
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=49.21 E-value=18 Score=21.36 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=5.6
Q ss_pred HHHHHHHhccCCCC
Q 019098 316 CVGFYVVIWGKAND 329 (346)
Q Consensus 316 ~~G~~~~~~~~~~~ 329 (346)
..+.+++.++++++
T Consensus 27 ~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 27 GLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHTTCSS
T ss_pred HHHHHHHhhhhhhh
Confidence 33334444444333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=49.17 E-value=1.4e+02 Score=26.35 Aligned_cols=14 Identities=7% Similarity=-0.104 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 019098 40 YFVFIFYSSATATL 53 (346)
Q Consensus 40 ~~~~~~~r~~~~~l 53 (346)
...+...|.+.+..
T Consensus 119 ~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 119 IAVMFVLLFLCGWF 132 (451)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556667766543
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=43.63 E-value=1.8e+02 Score=25.99 Aligned_cols=43 Identities=12% Similarity=-0.136 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhccCCC
Q 019098 286 PLSVAIAAIMSFIFLGESLHLGSVIGGVIICVGFYVVIWGKAN 328 (346)
Q Consensus 286 ~~~pv~~~~~~~~~~ge~~~~~~~iG~~li~~G~~~~~~~~~~ 328 (346)
..-++++.+...+..-.........|..+++.|+.++...+++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555554444332222234556888888887776654443
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=41.25 E-value=28 Score=20.58 Aligned_cols=6 Identities=0% Similarity=-0.119 Sum_probs=2.3
Q ss_pred HHHhcc
Q 019098 320 YVVIWG 325 (346)
Q Consensus 320 ~~~~~~ 325 (346)
+++.++
T Consensus 32 ~~~~RR 37 (44)
T 2ks1_B 32 GLFMRR 37 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333333
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=35.71 E-value=13 Score=24.01 Aligned_cols=17 Identities=24% Similarity=0.651 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHhcc
Q 019098 309 VIGGVIICVGFYVVIWG 325 (346)
Q Consensus 309 ~iG~~li~~G~~~~~~~ 325 (346)
++++++.++|+++...+
T Consensus 23 ifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 34556666777666654
No 11
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=26.70 E-value=47 Score=21.66 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhc
Q 019098 310 IGGVIICVGFYVVIW 324 (346)
Q Consensus 310 iG~~li~~G~~~~~~ 324 (346)
+++++.++|+++...
T Consensus 23 fA~vLfi~GI~iilS 37 (72)
T 2jo1_A 23 IAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 344555556555543
Done!