Query 019098
Match_columns 346
No_of_seqs 159 out of 1858
Neff 9.6
Searched_HMMs 13730
Date Mon Mar 25 10:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019098.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019098hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 49.9 62 0.0045 26.3 26.6 14 267-280 363-376 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 47.5 53 0.0039 24.8 9.3 28 290-317 95-122 (222)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 28.2 30 0.0022 16.2 3.1 18 184-201 2-19 (27)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 9.6 1.2E+02 0.0087 22.2 3.6 23 296-318 83-105 (199)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 9.5 1.1E+02 0.008 14.4 2.2 15 291-305 14-28 (30)
6 d2axte1 f.23.38.1 (E:3-84) Cyt 8.7 1.2E+02 0.0091 18.5 2.7 41 305-345 26-66 (82)
7 d1gl4a1 d.22.1.2 (A:399-631) D 7.1 84 0.0061 24.0 1.6 37 95-132 42-78 (233)
8 d1kqfb2 f.23.22.1 (B:246-290) 6.3 2.2E+02 0.016 15.3 2.8 22 300-321 8-29 (45)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 5.5 99 0.0072 19.5 1.1 14 313-326 29-42 (91)
10 d1q90r_ f.23.12.1 (R:) ISP sub 5.4 2.4E+02 0.017 14.6 3.5 27 70-96 5-32 (39)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=49.90 E-value=62 Score=26.30 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=7.0
Q ss_pred HHHHHHhccCCcee
Q 019098 267 VVHTFGLHMKGPVY 280 (346)
Q Consensus 267 ~~~~~a~~~~~~~~ 280 (346)
..+....+..+...
T Consensus 363 ~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 363 LIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHTSCTTH
T ss_pred HHHHHHHHHcCHHH
Confidence 34445555555544
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=47.50 E-value=53 Score=24.81 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHH
Q 019098 290 AIAAIMSFIFLGESLHLGSVIGGVIICV 317 (346)
Q Consensus 290 v~~~~~~~~~~ge~~~~~~~iG~~li~~ 317 (346)
+.+.+.+..+.|.+++....+|.++.++
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3456677778899999998888777654
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.16 E-value=30 Score=16.17 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019098 184 VMGGLLLLMENLLISVWY 201 (346)
Q Consensus 184 ~~G~~~~l~~~~~~a~~~ 201 (346)
+.|.++.-+++++|+.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 467888888888888753
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.59 E-value=1.2e+02 Score=22.17 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=14.2
Q ss_pred HHHHhcCCcchhhhHHHHHHHHH
Q 019098 296 SFIFLGESLHLGSVIGGVIICVG 318 (346)
Q Consensus 296 ~~~~~ge~~~~~~~iG~~li~~G 318 (346)
...++|..++.....+..++++.
T Consensus 83 ~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 83 VLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH
T ss_pred HhhcCCCchHHHHHHHHHHHHHH
Confidence 34556777777666666655543
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.50 E-value=1.1e+02 Score=14.39 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=8.3
Q ss_pred HHHHHHHHHhcCCcc
Q 019098 291 IAAIMSFIFLGESLH 305 (346)
Q Consensus 291 ~~~~~~~~~~ge~~~ 305 (346)
.+.++-.++++|+|.
T Consensus 14 i~lfffaiffreppr 28 (30)
T d2axtt1 14 IALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHhcCCCC
Confidence 344444456777664
No 6
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.73 E-value=1.2e+02 Score=18.47 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=26.8
Q ss_pred chhhhHHHHHHHHHHHHHhccCCCCccccccccccccccCC
Q 019098 305 HLGSVIGGVIICVGFYVVIWGKANDEEGENEDSSKISLLQS 345 (346)
Q Consensus 305 ~~~~~iG~~li~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (346)
....+.|-+.+-.|+.--..+..++++.-.+++.+.|+..|
T Consensus 26 PslFiaGwlFVstGLAYdvFGtPrPneYft~~rq~~pli~~ 66 (82)
T d2axte1 26 PALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTD 66 (82)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTCCCTTCSSCSSCCSCCCCCC
T ss_pred cHHHHhhhhheecccchhhcCCCCcccccccccccCccccc
Confidence 33456677777777776667776766666666666676654
No 7
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.09 E-value=84 Score=24.02 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=30.9
Q ss_pred HHhhcccchhhhhhhhcccHHHHHHHHHHHhhhccccc
Q 019098 95 YTGIAYSSPTLASMISNLTPGFTFTLAIIFRMEKLALR 132 (346)
Q Consensus 95 ~~al~~~~~~~~~~i~~~~pi~~~lla~~~~~e~~~~~ 132 (346)
|.|+..+|+..+..+..+.|+.. .++|+|-+|.-...
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFK 78 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCC
T ss_pred EEEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCcc
Confidence 46788899999999999999887 67899988877544
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=6.31 E-value=2.2e+02 Score=15.30 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=12.1
Q ss_pred hcCCcchhhhHHHHHHHHHHHH
Q 019098 300 LGESLHLGSVIGGVIICVGFYV 321 (346)
Q Consensus 300 ~ge~~~~~~~iG~~li~~G~~~ 321 (346)
.+....+....|+...+++.++
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~f 29 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIF 29 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666655544
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.50 E-value=99 Score=19.49 Aligned_cols=14 Identities=29% Similarity=0.005 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhccC
Q 019098 313 VIICVGFYVVIWGK 326 (346)
Q Consensus 313 ~li~~G~~~~~~~~ 326 (346)
.+++.|.+++..-|
T Consensus 29 ~v~V~~~~~~~~~r 42 (91)
T d1fftb2 29 VIPAILMAVGFAWK 42 (91)
T ss_dssp TTHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhhee
Confidence 33445555544333
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.43 E-value=2.4e+02 Score=14.64 Aligned_cols=27 Identities=15% Similarity=0.039 Sum_probs=16.7
Q ss_pred CCCChhHHHHHHHHHHHH-HHHHHHHHH
Q 019098 70 PLLKFPVISRICLLSLIG-SLLRILGYT 96 (346)
Q Consensus 70 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~ 96 (346)
|...+++...++..|... .....++=+
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLALGY 32 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhccce
Confidence 556677777777777766 444444333
Done!