Query 019099
Match_columns 346
No_of_seqs 74 out of 76
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14736 N_Asn_amidohyd: Prote 100.0 4E-112 1E-116 806.0 30.0 269 42-346 1-274 (274)
2 PRK13498 chemoreceptor glutami 96.0 0.036 7.8E-07 50.4 8.6 136 61-223 7-156 (167)
3 PRK13490 chemoreceptor glutami 96.0 0.035 7.5E-07 50.2 8.3 135 62-224 4-154 (162)
4 PRK13489 chemoreceptor glutami 95.7 0.045 9.8E-07 52.4 8.3 134 61-225 18-168 (233)
5 PRK13493 chemoreceptor glutami 95.6 0.12 2.7E-06 48.7 10.7 132 61-225 28-182 (213)
6 PRK13488 chemoreceptor glutami 95.6 0.067 1.4E-06 48.2 8.6 133 63-225 3-150 (157)
7 PRK13491 chemoreceptor glutami 95.6 0.072 1.6E-06 49.9 8.7 133 60-225 12-158 (199)
8 PRK13495 chemoreceptor glutami 95.5 0.068 1.5E-06 48.3 8.2 130 64-225 4-148 (159)
9 COG1871 CheD Chemotaxis protei 95.4 0.058 1.3E-06 49.2 7.4 78 60-142 6-100 (164)
10 PRK13494 chemoreceptor glutami 95.4 0.086 1.9E-06 47.9 8.3 129 61-221 11-153 (163)
11 PRK13497 chemoreceptor glutami 95.3 0.096 2.1E-06 48.4 8.6 132 60-224 6-154 (184)
12 PRK13487 chemoreceptor glutami 95.0 0.13 2.7E-06 48.3 8.4 134 61-225 21-170 (201)
13 PF03975 CheD: CheD chemotacti 25.3 77 0.0017 26.7 3.1 87 112-222 17-104 (114)
14 PF13950 Epimerase_Csub: UDP-g 24.2 96 0.0021 23.6 3.2 34 286-322 27-60 (62)
15 TIGR00702 uncharacterized doma 24.0 2.5E+02 0.0055 28.4 7.0 132 167-321 201-337 (377)
16 COG5226 CEG1 mRNA capping enzy 21.0 1.1E+02 0.0025 31.3 3.8 39 300-338 16-54 (404)
17 PF03254 XG_FTase: Xyloglucan 20.7 61 0.0013 34.5 1.9 60 233-297 367-427 (476)
18 COG4848 Uncharacterized protei 20.0 62 0.0013 31.4 1.7 31 67-108 197-228 (265)
No 1
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase
Probab=100.00 E-value=4.5e-112 Score=805.98 Aligned_cols=269 Identities=41% Similarity=0.680 Sum_probs=260.5
Q ss_pred hhccccceeeccCCCCCCCCceEEEecceeEeecCC--ceeeeccCCCceeeeEEEeecCCCceEEEeccCcchhhHHHH
Q 019099 42 SFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPA--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLC 119 (346)
Q Consensus 42 ~l~~~p~~~v~~~~~~~~~~~~LYV~QrE~A~~~P~--~v~~lGSDdATTC~ivVlRh~~sG~t~laH~Dgs~~v~~~v~ 119 (346)
+|.++|.+.++ |+|+|||+|||||||+|+ +|+|||||||||||||||||++|||||||||||+++ +++|+
T Consensus 1 ~~~s~~~~~~~-------~~~~lYV~QrE~A~~~p~d~~v~~lGSDdATTC~ivVlRh~~sg~t~laH~Dgs~~-~~~v~ 72 (274)
T PF14736_consen 1 QFRSQPHKVVG-------PKGLLYVQQREFATTTPADKSVSILGSDDATTCHIVVLRHTGSGATCLAHLDGSDT-EEGVA 72 (274)
T ss_pred CcccCCceecC-------CCeeEEEecceeEEecCccCccceEecCCCcEEEEEEEEcCCCCcEEEEEecCCCh-hhHHH
Confidence 58899999999 999999999999999999 699999999999999999999999999999999996 99999
Q ss_pred HHHHhhc---CCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCC
Q 019099 120 QMLSLVV---DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNT 196 (346)
Q Consensus 120 ~ml~~l~---~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt 196 (346)
+||+++. ..+.+++|||||||||.|+ +|||++|+.+||++||+++++|||+||||+++||
T Consensus 73 ~ml~~v~~~~~~~~~~~lelhLVGGF~D~-----------------~~~S~~l~~~ll~~f~~~~~~~~L~t~Cv~~~Nt 135 (274)
T PF14736_consen 73 QMLSSVQSLSNGYPEGRLELHLVGGFDDD-----------------RGYSQKLSLNLLEAFHKQPEEIHLRTFCVTELNT 135 (274)
T ss_pred HHHHHHHhhccCCCCCceEEEEEccccCc-----------------ccchHHHHHHHHHHHHcCcceEEEEEEEEccCCC
Confidence 9999964 4568999999999999999 8999999999999999999999999999999999
Q ss_pred cccCCCCCcceEEEEEEEecCCeeecccCCCCCCCchHHHHHhhhhccccccCCCCeeeeeeeCCCCeEEeccccccccc
Q 019099 197 KRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRWTVRK 276 (346)
Q Consensus 197 ~~~~~g~~~Pii~Gi~VnvkTG~ifPAsF~~~~RGP~e~lR~aR~~~~~~~~~~gg~l~~iYD~~~~~l~I~Pf~w~p~~ 276 (346)
+++ +|++|||||||+||+|||+||||+| ++|||+|+||+||+++ |+|+|+||||+++++|+|+||+|+|++
T Consensus 136 ~~~-~g~~~Pii~Gi~VnvkTG~IfpAsF--~~rGP~~~lR~aR~~~------~~~~l~~iYD~~~~~l~I~Pf~~~p~~ 206 (274)
T PF14736_consen 136 RVE-DGIHRPIIYGIAVNVKTGEIFPASF--PDRGPDEILRSARVFT------GGGRLLNIYDTETDQLRIGPFHWRPFP 206 (274)
T ss_pred ccC-CCccCcEEEEEEEEecCCeEecccC--cccCCcHHHHHHHHhc------CCCceEEEEECCCCeEEECCCcCCCcc
Confidence 887 5999999999999999999999999 9999999999999995 799999999999999999999999996
Q ss_pred hhhhhhhccCCHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCCCcCCCCCCceEEeCCCCCeeeC
Q 019099 277 LHIVMSLQQLSDEEILRRCSTSPSAEGPDFVENLRRQWNYLIKRPDWRETFPWKQPRVFQRAADGGWRRC 346 (346)
Q Consensus 277 ~~i~~~L~~~sD~~iL~~~STSP~aEpPhFv~~iR~~l~fl~~hP~~~~~Fp~~~P~~y~r~~~G~W~~~ 346 (346)
++++|| +|||++|||+|||||+|||||||++||++|+||++||+|+++||+|||++|+|++||+|+||
T Consensus 207 -~~~~~l-~~~D~~iL~~lSTSP~aEpp~Fv~~ir~~l~fl~~hP~p~~~Fp~~~p~~y~r~~~G~W~~~ 274 (274)
T PF14736_consen 207 -HADFWL-SQSDSEILQYLSTSPEAEPPHFVEHIRSTLRFLQEHPDPDTLFPDNQPRVYRRDEDGRWERV 274 (274)
T ss_pred -ChHHHh-hCCHHHHHHhcCCCcCCCCchHHHHHHHHHHHHHHCCCHHHhCCCCCceEEEECCCCCEEeC
Confidence 899999 89999999999999999999999999999999999999999999999999999999999996
No 2
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.04 E-value=0.036 Score=50.38 Aligned_cols=136 Identities=12% Similarity=0.189 Sum_probs=91.1
Q ss_pred CceEEEecceeEee-cCC-ceeeeccCCCceeeeEEEeecCCCceEEEeccCc-----------chhhHHHHHHHHhhc-
Q 019099 61 SKYVYVFQREYATV-DPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP-----------EIVDIGLCQMLSLVV- 126 (346)
Q Consensus 61 ~~~LYV~QrE~A~~-~P~-~v~~lGSDdATTC~ivVlRh~~sG~t~laH~Dgs-----------~~v~~~v~~ml~~l~- 126 (346)
...++|.++|++++ .|. -..+||| |+.|+|.++..+...++|+==| ...+.|+..|++.+.
T Consensus 7 ~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~rY~d~ai~~Ll~~m~~ 81 (167)
T PRK13498 7 TKEIVLQPGEVVFATRPTRLRTLLGS-----CVAITFWHPQQHIGGMCHFMLPGRIRKHQPLDGRYADEAMELLIRHALA 81 (167)
T ss_pred ceEEEEeCCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcCcHHHHHHHHHHHHHH
Confidence 45789999999998 555 3556776 9999999999999999997222 235789999998864
Q ss_pred CCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCCCcc
Q 019099 127 DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYP 206 (346)
Q Consensus 127 ~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~~~P 206 (346)
.+..-.+|++.|.||=.=-.....+ ........+......+.|++... .|..-=+++.+-+
T Consensus 82 ~Ga~~~~l~aKifGGA~m~~~~~~~--------~~~~~IG~rNi~~a~~~L~~~gi--~i~a~DvGG~~gR--------- 142 (167)
T PRK13498 82 NGTPPEDYQVKLFGGGNMFPELQQD--------LHTLNVADKNIHAALALAEQNGL--HLKAQDLGSTGHR--------- 142 (167)
T ss_pred cCCCHHHEEEEEEECcccccccccC--------cccCChHHHHHHHHHHHHHHCCC--cEEEEeCCCCCCc---------
Confidence 4555779999999994422100000 00134666777777777776554 3443334443332
Q ss_pred eEEEEEEEecCCeeecc
Q 019099 207 IFHGFLVETCTGSLSPA 223 (346)
Q Consensus 207 ii~Gi~VnvkTG~ifPA 223 (346)
=+.+++.||++.=-
T Consensus 143 ---~i~f~~~tG~v~vk 156 (167)
T PRK13498 143 ---SIIFDLWNGNVWVR 156 (167)
T ss_pred ---EEEEECCCCEEEEE
Confidence 35678888887643
No 3
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.01 E-value=0.035 Score=50.23 Aligned_cols=135 Identities=12% Similarity=0.195 Sum_probs=91.1
Q ss_pred ceEEEecceeEee-cCC-ceee-eccCCCceeeeEEEeecCCCceEEEeccC------------cchhhHHHHHHHHhhc
Q 019099 62 KYVYVFQREYATV-DPA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN------------PEIVDIGLCQMLSLVV 126 (346)
Q Consensus 62 ~~LYV~QrE~A~~-~P~-~v~~-lGSDdATTC~ivVlRh~~sG~t~laH~Dg------------s~~v~~~v~~ml~~l~ 126 (346)
..++|..+|++++ .|. -..+ ||| |+.|+|.++..+.-.++|+== ...++.|+..|++.+.
T Consensus 4 ~~i~v~ige~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Li~~m~ 78 (162)
T PRK13490 4 KEIKVGIADLNVAKSPDKIITVGLGS-----CIGIALYDGIKCIGGLSHIMLPDSTQFSNVTNPMKFADLAIPILIEKME 78 (162)
T ss_pred cEEEEEeCCEEEECCCCEEEEEcCcc-----eEEEEEEcCCCCEEEEEEEECCCCccCCCCCCCccCHHHHHHHHHHHHH
Confidence 3678999999999 676 3555 776 999999999999999999721 1235789999998864
Q ss_pred -CCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCCCc
Q 019099 127 -DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAY 205 (346)
Q Consensus 127 -~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~~~ 205 (346)
.+....+|++.|.||=.=-.... . .......+.......+.|.+.. |.+..-=+++.+.+
T Consensus 79 ~~Ga~~~~l~aKifGGA~m~~~~~--------~-~~~~~IG~rNv~~a~~~L~~~g--I~i~a~dvGG~~gR-------- 139 (162)
T PRK13490 79 KLGANKRNLKAKIAGGASMFNFSD--------K-SMVMDIGNRNGKAVKKKLKELS--IPILAEDIGGNKGR-------- 139 (162)
T ss_pred HcCCCHHHEEEEEEeCccccCCCC--------c-cccCChhHHHHHHHHHHHHHcC--CcEEEEECCCCCCc--------
Confidence 45567899999999965321000 0 0013466677777777777654 44444445544432
Q ss_pred ceEEEEEEEecCCeeeccc
Q 019099 206 PIFHGFLVETCTGSLSPAS 224 (346)
Q Consensus 206 Pii~Gi~VnvkTG~ifPAs 224 (346)
=+-+++.||++.=-.
T Consensus 140 ----~i~f~~~tG~v~vk~ 154 (162)
T PRK13490 140 ----TMIFDTSDGKVYIKT 154 (162)
T ss_pred ----EEEEECCCCEEEEEE
Confidence 256788888876443
No 4
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.75 E-value=0.045 Score=52.39 Aligned_cols=134 Identities=11% Similarity=0.123 Sum_probs=91.9
Q ss_pred CceEEEecceeEeecCC-c-eeeeccCCCceeeeEEEeecCCCceEEEeccCc--------------chhhHHHHHHHHh
Q 019099 61 SKYVYVFQREYATVDPA-L-VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP--------------EIVDIGLCQMLSL 124 (346)
Q Consensus 61 ~~~LYV~QrE~A~~~P~-~-v~~lGSDdATTC~ivVlRh~~sG~t~laH~Dgs--------------~~v~~~v~~ml~~ 124 (346)
...++|.++||+++.+. . ..+||| |+.|+|.++..+...|.|+==+ ...+.++..|++.
T Consensus 18 ~~~v~l~pGE~~Vs~~~~vItTvLGS-----CVaV~LyDp~~~IGGM~HfmLP~~~~~~~~~~~~~~rYgd~Ame~Li~~ 92 (233)
T PRK13489 18 RPGVKLLPNEFYTTREDMVLVTVLGS-----CVAACLHDPVAGIGGMNHFMLPDDGADAGAAASESMRYGAYAMEVLINE 92 (233)
T ss_pred cceEEEecCeEEEeCCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEECCCCcccCccCCCCCcccHHHHHHHHHHH
Confidence 34688999999999754 2 344665 9999999999999999997211 2357889999988
Q ss_pred h-cCCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCC
Q 019099 125 V-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGN 203 (346)
Q Consensus 125 l-~~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~ 203 (346)
+ ..+..-.+|++.|.||=.--... ...++.+....-.++.|.+... .|..-=|++..-+
T Consensus 93 m~~~Ga~r~~L~AKifGGA~m~~~~------------~~~~IG~RNieaa~~~L~~~gI--~IvaeDvGG~~gR------ 152 (233)
T PRK13489 93 LIKAGGRRERFEAKVFGGAAVLAGM------------TTINIGDRNADFVRRYLALERI--RITAEDLQGVHPR------ 152 (233)
T ss_pred HHHcCCCHHHEEEEEEECccccCCC------------CcCChhHHHHHHHHHHHHHcCC--cEEEEeCCCCCCc------
Confidence 6 34556789999999996543100 0135667777777777776544 4443334433221
Q ss_pred CcceEEEEEEEecCCeeecccC
Q 019099 204 AYPIFHGFLVETCTGSLSPASF 225 (346)
Q Consensus 204 ~~Pii~Gi~VnvkTG~ifPAsF 225 (346)
=|.+++.||++.=-..
T Consensus 153 ------kV~f~~~TG~v~Vk~~ 168 (233)
T PRK13489 153 ------KVAFMPRTGRAMVKKL 168 (233)
T ss_pred ------EEEEECCCCEEEEEEc
Confidence 3667888888876555
No 5
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.65 E-value=0.12 Score=48.75 Aligned_cols=132 Identities=13% Similarity=0.135 Sum_probs=91.6
Q ss_pred CceEEEecceeEee-cCCce-eeeccCCCceeeeEEEeecCCCceEEEeccC--------------------cchhhHHH
Q 019099 61 SKYVYVFQREYATV-DPALV-DYVGTDEATTCVGLVIRNRRNRMTSIAHMDN--------------------PEIVDIGL 118 (346)
Q Consensus 61 ~~~LYV~QrE~A~~-~P~~v-~~lGSDdATTC~ivVlRh~~sG~t~laH~Dg--------------------s~~v~~~v 118 (346)
...++|..+|++++ .|..+ -+||| |+.|+|.++..+...|+|+== ....+.|+
T Consensus 28 ~~~v~l~pGe~~v~~~~~~itT~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~~~~~~~~rY~d~Am 102 (213)
T PRK13493 28 RHWVKVMPGGVYATSDQEIIHTGLGS-----CVSACAWDIEMKVGGMNHFLLPFNNQFESQHWHPQALLSDSSRYGCYAM 102 (213)
T ss_pred ceEEEEecCeEEEECCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEEcCCCcccCccccccccccCCccccHHHHH
Confidence 44688999999998 44433 34776 999999999999999999721 22346789
Q ss_pred HHHHHhhc-CCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCc
Q 019099 119 CQMLSLVV-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTK 197 (346)
Q Consensus 119 ~~ml~~l~-~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~ 197 (346)
..|++.+. .+..-.+|++.|.||=+=-. + .....+......++.|.+... .+..-=|++.+.+
T Consensus 103 ~~Li~~m~~~Ga~~~~l~aKifGGA~m~~-----~---------~~~IG~rNi~~a~~~L~~~gI--~Iva~DvGG~~gR 166 (213)
T PRK13493 103 EVLINRLLSMGAERERLKFKLFGGAHLMG-----Y---------QSLVGEKNVEFVLEYAKREKL--NVVAQDLGGAQPR 166 (213)
T ss_pred HHHHHHHHHcCCCHHHeEEEEEeCccccc-----c---------cccHhHHHHHHHHHHHHHcCC--cEEEEeCCCCCCc
Confidence 99998863 45567899999999965321 0 034667778888888877654 4444445544442
Q ss_pred ccCCCCCcceEEEEEEEecCCeeecccC
Q 019099 198 RDSQGNAYPIFHGFLVETCTGSLSPASF 225 (346)
Q Consensus 198 ~~~~g~~~Pii~Gi~VnvkTG~ifPAsF 225 (346)
=|.+++.||++.=-..
T Consensus 167 ------------ki~f~~~tG~v~vk~~ 182 (213)
T PRK13493 167 ------------KLLFDPQTGQAWVKRI 182 (213)
T ss_pred ------------EEEEECCCCEEEEEEc
Confidence 2567888888775544
No 6
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.64 E-value=0.067 Score=48.16 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=90.5
Q ss_pred eEEEecceeEeec-CC-ceee-eccCCCceeeeEEEeecCCCceEEEeccCc-----------chhhHHHHHHHHhhc-C
Q 019099 63 YVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDNP-----------EIVDIGLCQMLSLVV-D 127 (346)
Q Consensus 63 ~LYV~QrE~A~~~-P~-~v~~-lGSDdATTC~ivVlRh~~sG~t~laH~Dgs-----------~~v~~~v~~ml~~l~-~ 127 (346)
-++|.++|++++. |. -..+ ||| |+.|+|.++..+.-.++|+==| ...+.|+..|++.+. .
T Consensus 3 ~v~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~li~~m~~~ 77 (157)
T PRK13488 3 VIKVGIGEYAVGKSPEVIETSGLGS-----CVGIILYDRGKKIGGLAHVMLPESSGAGDRNPGKYADTAIPLLIEEMVKL 77 (157)
T ss_pred cEEEecCcEEEECCCCEEEEEcCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcccHHHHHHHHHHHHHHc
Confidence 4679999999984 44 3455 676 9999999999999999997322 235789999998863 4
Q ss_pred CCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCCCcce
Q 019099 128 HDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPI 207 (346)
Q Consensus 128 ~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pi 207 (346)
+....+|++.|.||=.=-... ....+..++.....++.|++.. |.+..-=|++.+-+
T Consensus 78 Ga~~~~l~akifGGA~m~~~~-----------~~~~~IG~rNi~~a~~~L~~~g--i~i~a~dvGG~~gR---------- 134 (157)
T PRK13488 78 GARKSKLEAKLAGGAAMFDFS-----------SNNLNIGERNIESAKETLKKLG--IRIVAEDVGGDYGR---------- 134 (157)
T ss_pred CCCHHHEEEEEEeCcccccCC-----------CccCChHHHHHHHHHHHHHHCC--CcEEEEEcCCCCCc----------
Confidence 556789999999995432100 0013456677777777777654 44444445554442
Q ss_pred EEEEEEEecCCeeecccC
Q 019099 208 FHGFLVETCTGSLSPASF 225 (346)
Q Consensus 208 i~Gi~VnvkTG~ifPAsF 225 (346)
=+-+++.||++.=-..
T Consensus 135 --~i~f~~~tG~v~vk~~ 150 (157)
T PRK13488 135 --TVKFDLKTGKVIVRKA 150 (157)
T ss_pred --EEEEECCCCEEEEEEc
Confidence 3667888888764443
No 7
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.55 E-value=0.072 Score=49.93 Aligned_cols=133 Identities=10% Similarity=0.103 Sum_probs=92.2
Q ss_pred CCceEEEecceeEee-cCCc--eeeeccCCCceeeeEEEeecCCCceEEEeccCc----------chhhHHHHHHHHhhc
Q 019099 60 PSKYVYVFQREYATV-DPAL--VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP----------EIVDIGLCQMLSLVV 126 (346)
Q Consensus 60 ~~~~LYV~QrE~A~~-~P~~--v~~lGSDdATTC~ivVlRh~~sG~t~laH~Dgs----------~~v~~~v~~ml~~l~ 126 (346)
.-..++|.++|++++ .|.. --+||| |+.|+|.++..+.-.|+|+==+ ...+.|+..|++.+.
T Consensus 12 ~~~~v~V~~Ge~~vs~~p~~litT~LGS-----CVaV~LyDp~~~IGGM~H~mLP~~~~~~~~~~rYgd~Ai~~Li~~m~ 86 (199)
T PRK13491 12 QISITHVTQGSCVASDSPNEVYATILGS-----CICTCMCDPVAGVGGMNHFLLPSADVEDAQHLRYGSHAMELLINALL 86 (199)
T ss_pred eEEEEEEecCcEEEECCCCEEEEEeccc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCcccHHHHHHHHHHHHH
Confidence 356799999999998 6652 345776 9999999999999999998333 245789999998864
Q ss_pred -CCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCCCc
Q 019099 127 -DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAY 205 (346)
Q Consensus 127 -~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~~~ 205 (346)
.+..-.+|++.|.||=.=-. . .....+......++.|.+... .|.--=+++.+-+
T Consensus 87 ~~Ga~~~~L~AKifGGA~M~~-----~---------~~~IG~rNie~a~~~L~~~GI--~ivaeDvGG~~gR-------- 142 (199)
T PRK13491 87 KLGAARQRIEAKIFGGAMMTP-----Q---------LGAIGQANAAFARRYLRDEGI--RCTAHSLGGNRAR-------- 142 (199)
T ss_pred HcCCCHHHeEEEEEeCccccc-----c---------cccHHHHHHHHHHHHHHHcCC--cEEEEeCCCCCCc--------
Confidence 45567899999999965321 0 024556667777777766543 3443344443332
Q ss_pred ceEEEEEEEecCCeeecccC
Q 019099 206 PIFHGFLVETCTGSLSPASF 225 (346)
Q Consensus 206 Pii~Gi~VnvkTG~ifPAsF 225 (346)
=|.+++.||++.=-..
T Consensus 143 ----kI~f~~~tG~v~vk~~ 158 (199)
T PRK13491 143 ----RIRFWPKTGRVQQMFL 158 (199)
T ss_pred ----EEEEECCCCEEEEEEc
Confidence 3678899998875444
No 8
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.54 E-value=0.068 Score=48.31 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=89.6
Q ss_pred EEEecceeEee-cCC-ceee-eccCCCceeeeEEEeecCCCceEEEeccCc-----------chhhHHHHHHHHhhc-CC
Q 019099 64 VYVFQREYATV-DPA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDNP-----------EIVDIGLCQMLSLVV-DH 128 (346)
Q Consensus 64 LYV~QrE~A~~-~P~-~v~~-lGSDdATTC~ivVlRh~~sG~t~laH~Dgs-----------~~v~~~v~~ml~~l~-~~ 128 (346)
+||.++|++++ .|. -..+ ||| |+.|+|.++..+...++|+==| ...+.++..|++.+. .+
T Consensus 4 v~v~~Ge~~v~~~p~~l~T~~LGS-----CVaV~l~Dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~Li~~m~~~G 78 (159)
T PRK13495 4 KVIGIGEYAVMKNPGVIVTLGLGS-----CVGVCMRDPVAKVGAMAHVMLPDSGGKETDKPGKYADTAIKTLVEELKKMG 78 (159)
T ss_pred EEEecCcEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHcC
Confidence 68999999998 565 3554 776 9999999999999999997211 235789999999864 45
Q ss_pred CCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCCCcceE
Q 019099 129 DLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIF 208 (346)
Q Consensus 129 ~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii 208 (346)
..-.+|++.|.||=.=-... ..........-..+.|.+.... +..-=+++..-+
T Consensus 79 a~~~~l~aKifGGA~m~~~~-------------~~~IG~rNi~~a~~~L~~~gI~--i~a~dvGG~~gR----------- 132 (159)
T PRK13495 79 AKVERLEAKIAGGASMFESS-------------GMNIGARNVEAVKKHLKDFGIK--LVAEDTGGNRAR----------- 132 (159)
T ss_pred CCHHHEEEEEEeCCccCCCC-------------CCChHHHHHHHHHHHHHHcCCc--EEEEeCCCCCCc-----------
Confidence 56789999999996543100 1356666777777777765544 333334443332
Q ss_pred EEEEEEecCCeeecccC
Q 019099 209 HGFLVETCTGSLSPASF 225 (346)
Q Consensus 209 ~Gi~VnvkTG~ifPAsF 225 (346)
=+-+++.||++.=-..
T Consensus 133 -~i~f~~~tG~v~vk~~ 148 (159)
T PRK13495 133 -SIEYNIETGKLLVRKV 148 (159)
T ss_pred -EEEEECCCCEEEEEEc
Confidence 3567888888764433
No 9
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.42 E-value=0.058 Score=49.21 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=61.2
Q ss_pred CCceEEEecceeEeec-CC--ceeeeccCCCceeeeEEEeecCCCceEEEecc-------C------cchhhHHHHHHHH
Q 019099 60 PSKYVYVFQREYATVD-PA--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMD-------N------PEIVDIGLCQMLS 123 (346)
Q Consensus 60 ~~~~LYV~QrE~A~~~-P~--~v~~lGSDdATTC~ivVlRh~~sG~t~laH~D-------g------s~~v~~~v~~ml~ 123 (346)
..+.+=|-|+|++++. |. ....||| |+.|+||...+|...++|+= + ++..+.++..|++
T Consensus 6 ~~~~v~Vg~ge~~v~~~p~~i~ttgLGS-----CV~v~l~D~~~~vgGm~H~mLP~s~~~~~~~~~~~kY~d~ame~Lin 80 (164)
T COG1871 6 ARKEVKVGIGEYKVTKDPDVIITTGLGS-----CVGVCLRDPVNGVGGMNHFMLPDSALSGSPLSNPAKYGDTAMELLIN 80 (164)
T ss_pred hCCEEEEeeeeEEEecCCCEEEEecccc-----eEEEEEEccccCccceeEEeccCCCCCCCcCCchhhHHHHHHHHHHH
Confidence 5667889999999994 56 4777886 99999999999999999972 1 2224577778887
Q ss_pred hh-cCCCCCceeeEEEeccc
Q 019099 124 LV-VDHDLDAELDVYLIGGF 142 (346)
Q Consensus 124 ~l-~~~~~~~~levhLVGGF 142 (346)
.| ..+..-.|||.-|.||-
T Consensus 81 ~ll~~GA~r~rL~AKlfGGa 100 (164)
T COG1871 81 ELLKLGASRERLEAKLFGGA 100 (164)
T ss_pred HHHHcCCChhhheeeecccH
Confidence 74 55666889999999993
No 10
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.36 E-value=0.086 Score=47.91 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=89.0
Q ss_pred CceEEEecceeEeecCC-ceeeeccCCCceeeeEEEeecCCCceEEEeccCc------------chhhHHHHHHHHhh-c
Q 019099 61 SKYVYVFQREYATVDPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP------------EIVDIGLCQMLSLV-V 126 (346)
Q Consensus 61 ~~~LYV~QrE~A~~~P~-~v~~lGSDdATTC~ivVlRh~~sG~t~laH~Dgs------------~~v~~~v~~ml~~l-~ 126 (346)
.-.+|++++|+++..+. -..+||| |+.|+|.++..+.-.++|+==| ...+.|+..|++.+ .
T Consensus 11 ~~~~~l~~Ge~~v~~~~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Ll~~m~~ 85 (163)
T PRK13494 11 RDVTIIVPGEAFVSNDRVISTILGS-----CVAVVLYDESRNLIGMNHYVLVKSDLVISPLQRGRYGVYAIPMLIDAMLE 85 (163)
T ss_pred ccEEEEecCeEEEeCCcEEEEeCcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 34578999999999875 2455665 9999999999999999997333 12578999999886 3
Q ss_pred CCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCCCcc
Q 019099 127 DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYP 206 (346)
Q Consensus 127 ~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~~~P 206 (346)
.+..-.+|++.|.||=.=-... ..........-.++.|.+... .+.--=+++.+-+
T Consensus 86 ~Ga~~~~l~aKifGGa~m~~~~-------------~~~IG~rNv~~a~~~L~~~gI--~i~a~DvGG~~gR--------- 141 (163)
T PRK13494 86 NGASKSNLKAKLFGGTNFMAKG-------------TIKVGLENSEFAVNTLNKYGI--PILAKDFDQSKSR--------- 141 (163)
T ss_pred cCCCHHHeEEEEEeCcccCCcc-------------cCChHHHHHHHHHHHHHHcCC--cEEEEeCCCCCCc---------
Confidence 4556789999999995433100 134566677777777776544 4444444444332
Q ss_pred eEEEEEEEecCCeee
Q 019099 207 IFHGFLVETCTGSLS 221 (346)
Q Consensus 207 ii~Gi~VnvkTG~if 221 (346)
=|-+++.||++.
T Consensus 142 ---~i~f~~~tG~v~ 153 (163)
T PRK13494 142 ---KIFVFPENFKVI 153 (163)
T ss_pred ---EEEEECCCCEEE
Confidence 356778888775
No 11
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.30 E-value=0.096 Score=48.42 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=91.2
Q ss_pred CCceEEEecceeEee-cCC-ce-eeeccCCCceeeeEEEeecCCCceEEEeccC-------------cchhhHHHHHHHH
Q 019099 60 PSKYVYVFQREYATV-DPA-LV-DYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-------------PEIVDIGLCQMLS 123 (346)
Q Consensus 60 ~~~~LYV~QrE~A~~-~P~-~v-~~lGSDdATTC~ivVlRh~~sG~t~laH~Dg-------------s~~v~~~v~~ml~ 123 (346)
-.+-++|.++|++++ .|. .+ .+||| |+.|+|.++..+...++|+== ....+.++..|++
T Consensus 6 ~~~~v~v~~Ge~~v~~~p~~~itt~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~ai~~Li~ 80 (184)
T PRK13497 6 AARRVHIIQGEYKVVNDPNVVLSTILGS-----CVAACLRDPVAGVGGMNHFLLPGSATSPTSGGDATRYGVHLMELLIN 80 (184)
T ss_pred cCceEEEecCcEEEECCCCEEEEEeCcc-----ceEEEEEcCCCCEEEEEEEECCCCCCcCCCCCCccchHHHHHHHHHH
Confidence 456899999999998 554 33 45776 999999999999999999721 1235788999998
Q ss_pred hhc-CCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCC
Q 019099 124 LVV-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQG 202 (346)
Q Consensus 124 ~l~-~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g 202 (346)
.+. .+..-.+|++.|.||=.=-. ......++.....++.|.+....+ .--=+++.+-+
T Consensus 81 ~m~~~Ga~~~~l~aKifGGA~m~~--------------~~~~IG~rNi~~a~~~L~~~gI~i--~a~DvGG~~gR----- 139 (184)
T PRK13497 81 GLLKQGARRDRLEAKIFGGAKTIA--------------TFSNVGEQNAAFAMQFLRDEGIPV--VGSSTGGEHGR----- 139 (184)
T ss_pred HHHHcCCCHHHEEEEEEeCchhcc--------------ccccHHHHHHHHHHHHHHHcCCcE--EEEeCCCCCCc-----
Confidence 863 45567899999999965321 013566777777788887765443 33334443332
Q ss_pred CCcceEEEEEEEecCCeeeccc
Q 019099 203 NAYPIFHGFLVETCTGSLSPAS 224 (346)
Q Consensus 203 ~~~Pii~Gi~VnvkTG~ifPAs 224 (346)
=+-+++.||++.=-.
T Consensus 140 -------~v~f~~~tG~v~~k~ 154 (184)
T PRK13497 140 -------KLEYWPVSGRARQYP 154 (184)
T ss_pred -------EEEEECCCCeEEEEE
Confidence 356778888775433
No 12
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=94.97 E-value=0.13 Score=48.27 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=94.1
Q ss_pred CceEEEecceeEee-cCC-ceeeeccCCCceeeeEEEeecCCCceEEEeccCc-------------chhhHHHHHHHHhh
Q 019099 61 SKYVYVFQREYATV-DPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP-------------EIVDIGLCQMLSLV 125 (346)
Q Consensus 61 ~~~LYV~QrE~A~~-~P~-~v~~lGSDdATTC~ivVlRh~~sG~t~laH~Dgs-------------~~v~~~v~~ml~~l 125 (346)
...++|..+|++++ .|. -..+||| |+.|+|.++..+...|+|+==+ ..++.|+..|++.+
T Consensus 21 ~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~A~~~Li~~m 95 (201)
T PRK13487 21 CDAAKILPGEYFVTDDDTAIVTVLGS-----CVSACLRDPVLGIGGMNHFMLPDGGDSDGPLSASARYGSYAMELLINDL 95 (201)
T ss_pred cceEEEecCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCCcccHHHHHHHHHHHH
Confidence 34678999999998 565 3455776 9999999999999999997222 13578999999886
Q ss_pred c-CCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCCC
Q 019099 126 V-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNA 204 (346)
Q Consensus 126 ~-~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~~ 204 (346)
. .+....+|++.|.||=.--... ...+.......-.++.|++.. |.+..-=|++.+-+
T Consensus 96 ~~~Ga~~~~l~aKlfGGA~m~~~~------------~~~~IG~rNi~~a~~~L~~~g--I~iva~DvGG~~gR------- 154 (201)
T PRK13487 96 LKLGARRENLEAKVFGGGNVLRGF------------TSMNVGERNAEFVRDYLQTER--IPIVAEDLLDIYPR------- 154 (201)
T ss_pred HHcCCCHHHEEEEEEeCCcccCCC------------ccCCchHHHHHHHHHHHHHcC--CcEEEEECCCCCCc-------
Confidence 3 4556789999999996543110 013566777777777777654 45555556655443
Q ss_pred cceEEEEEEEecCCeeecccC
Q 019099 205 YPIFHGFLVETCTGSLSPASF 225 (346)
Q Consensus 205 ~Pii~Gi~VnvkTG~ifPAsF 225 (346)
=|.+++.||++.=-..
T Consensus 155 -----~v~f~~~tG~v~vk~~ 170 (201)
T PRK13487 155 -----KVYFFPTTGKVLVKKL 170 (201)
T ss_pred -----EEEEECCCCEEEEEEC
Confidence 3678889998875444
No 13
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=25.30 E-value=77 Score=26.73 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHhhc-CCCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeee
Q 019099 112 EIVDIGLCQMLSLVV-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLH 190 (346)
Q Consensus 112 ~~v~~~v~~ml~~l~-~~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~C 190 (346)
..++.|+..|+..+. .+....+|++.|+||=.=-.. . ................+.|.+ ..|++.-.=
T Consensus 17 rY~d~ai~~ll~~m~~~Ga~~~~l~aklfGGa~m~~~-~---------~~~~~~IG~rNv~~a~~~L~~--~gi~I~a~d 84 (114)
T PF03975_consen 17 RYGDTAIELLLDEMEKRGARPSRLEAKLFGGANMFPG-M---------NSSSFNIGERNVEAARELLAE--EGIPIVAED 84 (114)
T ss_dssp CBHHHHHHHHHHHHHTTT--GGG-EEEEEE----S----------------SS-HHHHHHHHHHHHHHH--TT--EEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHeEEEEeeCcccccc-c---------ccccCCHHHHHHHHHHHHHHH--CCCcEEEee
Confidence 446899999999874 355688999999999654310 0 000134445555555666654 456676666
Q ss_pred eccCCCcccCCCCCcceEEEEEEEecCCeeec
Q 019099 191 VLGHNTKRDSQGNAYPIFHGFLVETCTGSLSP 222 (346)
Q Consensus 191 V~~~Nt~~~~~g~~~Pii~Gi~VnvkTG~ifP 222 (346)
|++..-+ =+-+++.||+++=
T Consensus 85 vGG~~~R------------~v~f~~~tG~v~v 104 (114)
T PF03975_consen 85 VGGNFGR------------KVRFDPATGEVWV 104 (114)
T ss_dssp E-SSS-E------------EEEEETTTTEEEE
T ss_pred CCCCCCc------------EEEEEcCCCEEEE
Confidence 7766543 3668888888763
No 14
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=24.23 E-value=96 Score=23.65 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCC
Q 019099 286 LSDEEILRRCSTSPSAEGPDFVENLRRQWNYLIKRPD 322 (346)
Q Consensus 286 ~sD~~iL~~~STSP~aEpPhFv~~iR~~l~fl~~hP~ 322 (346)
-+-+-+.+.|.=.|.. +.-+-+|++|+|.++||+
T Consensus 27 Ad~~kA~~~LgW~p~~---~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 27 ADISKAREELGWKPKY---SLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp B--HHHHHHC----SS---SHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHhCCCcCC---CHHHHHHHHHHHHHHCcC
Confidence 3456677888888887 788999999999999997
No 15
>TIGR00702 uncharacterized domain. This uncharacterized domain comprises the whole of a protein in Methanococcus jannaschii and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=24.04 E-value=2.5e+02 Score=28.37 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCCCcceEEEEEEEecCCeeecccCCCCCCCchHHHHHhhhhcccc
Q 019099 167 LPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYE 246 (346)
Q Consensus 167 ~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~Gi~VnvkTG~ifPAsF~~~~RGP~e~lR~aR~~~~~~ 246 (346)
.+++..+++.|.....+++|.- ++ . +...|.+..+..|.+++.++ +.| ...--|+..+.+|-.-.
T Consensus 201 ~~~~~~l~~~~~~~G~~v~l~D--~t-------~-d~giPvv~a~~~~~~~~~~~-~g~-Gah~~~~~Al~RALtE~--- 265 (377)
T TIGR00702 201 NSIIAHLIEKLEAAGVPIDLAD--LT-------L-GGGYPVVAAVLDDPTLGTLF-GGF-GAHLDPEVALERALTEV--- 265 (377)
T ss_pred CHHHHHHHHHHHhCCCeEEEEE--Cc-------C-CCCceEEEEEEECCCCCcee-EEe-ccCCCHHHHHHHHHHHH---
Confidence 3578889999987665555432 11 2 45689999999998887655 334 14446788888887765
Q ss_pred ccCCCCeeeeeeeCCCCeEE-----eccccccccchhhhhhhccCCHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCC
Q 019099 247 DTSWNGKLLETYDTQTDRFV-----IAPCRWTVRKLHIVMSLQQLSDEEILRRCSTSPSAEGPDFVENLRRQWNYLIKRP 321 (346)
Q Consensus 247 ~~~~gg~l~~iYD~~~~~l~-----I~Pf~w~p~~~~i~~~L~~~sD~~iL~~~STSP~aEpPhFv~~iR~~l~fl~~hP 321 (346)
.++++..|.....+..+ ....+|.-....-..|+ . .. ....+..|+....+|-.+++..+.+|.+.=
T Consensus 266 ---~Q~R~~~i~g~r~d~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g 337 (377)
T TIGR00702 266 ---AQSRATQIHGVREDPPFAIEEFAERANYERHKRDSSGWF-S---ED-LIKRDTMYRFADWDFSGDLEEEAAKLMAIG 337 (377)
T ss_pred ---HhccchhhccCCCCCccchhhhhccccHHHHHHHhcccc-C---Hh-hcCcccCccccCCCccccHHHHHHHHHHHh
Confidence 57788777765555422 12222322211112344 1 11 455778899999999999999999998875
No 16
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=20.96 E-value=1.1e+02 Score=31.31 Aligned_cols=39 Identities=33% Similarity=0.421 Sum_probs=34.2
Q ss_pred CCCCCchHHHHHHHHHHHHhCCCCCCcCCCCCCceEEeC
Q 019099 300 SAEGPDFVENLRRQWNYLIKRPDWRETFPWKQPRVFQRA 338 (346)
Q Consensus 300 ~aEpPhFv~~iR~~l~fl~~hP~~~~~Fp~~~P~~y~r~ 338 (346)
.--||+-++.+|-.+.=++.-|.+..+||+.||--|..+
T Consensus 16 ~~~P~di~~~Lkt~i~klL~~~~P~~tFpGsqPVsf~~~ 54 (404)
T COG5226 16 NKVPPDIAEALKTKIYKLLCITEPRETFPGSQPVSFTLD 54 (404)
T ss_pred CcCCchHHHHHHHHHHHHhCCCCCcccCCCCcceeeehh
Confidence 456999999999999999999989999999999888653
No 17
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=20.73 E-value=61 Score=34.49 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=43.3
Q ss_pred hHHHHHhhhhccccccCCCCeeeeeeeCCCCeEEe-ccccccccchhhhhhhccCCHHHHHHhcCC
Q 019099 233 DEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVI-APCRWTVRKLHIVMSLQQLSDEEILRRCST 297 (346)
Q Consensus 233 ~e~lR~aR~~~~~~~~~~gg~l~~iYD~~~~~l~I-~Pf~w~p~~~~i~~~L~~~sD~~iL~~~ST 297 (346)
-|.||....- .|+..|..+.+|.+..+..+= +=-.-. ..+-++.||++++|..+...+||
T Consensus 367 ye~lr~~Y~~----~~t~tGe~V~V~QpShe~~Q~~~~~~h~-~kAlaEmyLLS~sD~LVTS~~ST 427 (476)
T PF03254_consen 367 YEKLRNMYWE----HPTVTGEVVGVHQPSHEEYQQFGDNMHN-QKALAEMYLLSLSDVLVTSGWST 427 (476)
T ss_pred HHHHHHHHhc----CCCcCCcEEEEECCCCcccccccccchH-HHHHHHHHHHHhccceEecCCCC
Confidence 3557776654 467788999999998887762 211122 22567999999999999888887
No 18
>COG4848 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.02 E-value=62 Score=31.38 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=21.0
Q ss_pred ecceeEeecCC-ceeeeccCCCceeeeEEEeecCCCceEEEec
Q 019099 67 FQREYATVDPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHM 108 (346)
Q Consensus 67 ~QrE~A~~~P~-~v~~lGSDdATTC~ivVlRh~~sG~t~laH~ 108 (346)
.|+|+|++.|| +|-|++ -||+. +|---||||
T Consensus 197 ~eGem~vavPHQDVLIia----------dIrn~-tGYDvla~m 228 (265)
T COG4848 197 VEGEMAVAVPHQDVLIIA----------DIRNE-TGYDVLAHM 228 (265)
T ss_pred hcceEEEeccCcceEEEE----------eeccc-cchhHHHHH
Confidence 47999999999 677654 46653 454445544
Done!