Query 019099
Match_columns 346
No_of_seqs 74 out of 76
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f9z_C Protein (chemotaxis met 96.0 0.033 1.1E-06 49.1 9.2 131 62-224 3-147 (159)
2 4af3_D Incenp, inner centromer 63.2 2.3 7.8E-05 32.6 1.0 26 319-344 41-66 (71)
3 2gpi_A Conserved hypothetical 24.3 36 0.0012 27.2 2.1 46 2-47 25-77 (91)
4 1k4u_P Phagocyte NADPH oxidase 17.4 28 0.00097 23.1 0.1 13 286-298 11-23 (32)
5 3gb3_A Killerred; fluorescent 16.6 59 0.002 30.3 2.0 26 61-86 207-234 (235)
6 2fsu_A Protein PHNH; C-P lyase 14.8 70 0.0024 29.1 2.0 40 130-186 11-50 (210)
7 3lax_A Phenylacetate-coenzyme 13.5 58 0.002 24.9 0.9 26 1-38 6-31 (109)
8 2ckc_A Chromodomain-helicase-D 12.5 1.2E+02 0.0041 23.9 2.4 19 21-39 44-62 (80)
9 4day_C Fanconi anemia group M 11.9 99 0.0034 21.1 1.6 34 254-296 3-36 (37)
10 1g5c_A Beta-carbonic anhydrase 11.7 1.1E+02 0.0037 26.2 2.2 16 90-105 80-95 (170)
No 1
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=95.96 E-value=0.033 Score=49.06 Aligned_cols=131 Identities=16% Similarity=0.174 Sum_probs=88.5
Q ss_pred ceEEEecceeEeec-CC-ceee-eccCCCceeeeEEEeecCCCceEEEecc---Cc-------chhhHHHHHHHHhh-cC
Q 019099 62 KYVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMD---NP-------EIVDIGLCQMLSLV-VD 127 (346)
Q Consensus 62 ~~LYV~QrE~A~~~-P~-~v~~-lGSDdATTC~ivVlRh~~sG~t~laH~D---gs-------~~v~~~v~~ml~~l-~~ 127 (346)
..++|.++|+.++. |. -..+ ||| |+.|+|+++..+.-.++|+= .+ ...+.++..|++.+ ..
T Consensus 3 ~~i~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~rY~d~am~~Li~~m~~~ 77 (159)
T 2f9z_C 3 MKKVIGIGEYAVMKNPGVIVTLGLGS-----CVAVCMRDPVAKVGAMAHVMLPDSGGKTDKPGKYADTAVKTLVEELKKM 77 (159)
T ss_dssp CEEECCTTCEEEEETTCEEEEEEESS-----CEEEEEEETTTTEEEEEEECBSCCSSCCSCGGGBHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCeEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHc
Confidence 45789999999884 55 3556 887 99999999999999999983 21 23567889999885 44
Q ss_pred CCCCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEEeeeeeccCCCcccCCCCCcce
Q 019099 128 HDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPI 207 (346)
Q Consensus 128 ~~~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pi 207 (346)
+..-.+|++.|.||=.=-... ..........-..+.|.+....+ .--=+++. ++.
T Consensus 78 Ga~~~~L~aKifGGA~m~~~~-------------~~~IG~rNv~~a~~~L~~~gI~i--~aeD~GG~----------~gR 132 (159)
T 2f9z_C 78 GAKVERLEAKIAGGASMFESK-------------GMNIGARNVEAVKKHLKDFGIKL--LAEDTGGN----------RAR 132 (159)
T ss_dssp TCCGGGCEEEEEECCCCSCCC-------------SSCHHHHHHHHHHHHHHHTTCCE--EEEEECCS----------SCE
T ss_pred CCCHHHEEEEEEeCcccCccc-------------ccChHHHHHHHHHHHHHHCCCcE--EEEeCCCC----------CCc
Confidence 556789999999995532100 02456667777777777665443 33223322 221
Q ss_pred EEEEEEEecCCeeeccc
Q 019099 208 FHGFLVETCTGSLSPAS 224 (346)
Q Consensus 208 i~Gi~VnvkTG~ifPAs 224 (346)
=+-+++.||++.=-+
T Consensus 133 --~i~f~~~tG~v~vk~ 147 (159)
T 2f9z_C 133 --SVEYNIETGKLLVRK 147 (159)
T ss_dssp --EEEEETTTTEEEEEC
T ss_pred --EEEEECCCCEEEEEE
Confidence 255688888876443
No 2
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=63.15 E-value=2.3 Score=32.64 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=7.9
Q ss_pred hCCCCCCcCCCCCCceEEeCCCCCee
Q 019099 319 KRPDWRETFPWKQPRVFQRAADGGWR 344 (346)
Q Consensus 319 ~hP~~~~~Fp~~~P~~y~r~~~G~W~ 344 (346)
.-|+.+++|+++++++.+||+.+.|.
T Consensus 41 ~p~~LeeIF~~~k~r~~kRtSSA~W~ 66 (71)
T 4af3_D 41 LPLDLEDIFKKSKPRYHKRTSSAVWN 66 (71)
T ss_dssp CCCCSTTTCC----------------
T ss_pred CCCCHHHHhCccccccccCCCcccCC
Confidence 45668999999999999999999996
No 3
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=24.30 E-value=36 Score=27.16 Aligned_cols=46 Identities=7% Similarity=-0.007 Sum_probs=35.8
Q ss_pred eeeCCeeeecCCCCC------CCCCCchhHHHHHHHhC-chhHhhhhhhcccc
Q 019099 2 IFVGGLPFSTNNSSW------SSSSSQGSDILVALLEH-PVLVSASHSFKSME 47 (346)
Q Consensus 2 l~v~g~~~~~~~~~~------~~~~~~~~~~l~~l~~h-P~l~~~a~~l~~~p 47 (346)
.+|||.++.|.=|.. ..++....++|++|..| ..|.+.|+.|....
T Consensus 25 A~V~G~~i~C~Is~e~Le~~~g~~~~~~~~~l~~F~~~R~diEe~Ae~lIe~e 77 (91)
T 2gpi_A 25 AQQQGMVIDCYIGQKVLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLIEQE 77 (91)
T ss_dssp EEETTEEEEEEEEHHHHHHHHTSCCCSHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred EEeCCeEEEEEEEHHHHHHHhCccCCCHHHHHHHHHHcchhHHHHHHHHHHcc
Confidence 379999999975533 22346788999999999 88999999987554
No 4
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=17.42 E-value=28 Score=23.13 Aligned_cols=13 Identities=54% Similarity=0.726 Sum_probs=10.5
Q ss_pred CCHHHHHHhcCCC
Q 019099 286 LSDEEILRRCSTS 298 (346)
Q Consensus 286 ~sD~~iL~~~STS 298 (346)
-|-++||+.||++
T Consensus 11 Ps~~lIl~RCs~~ 23 (32)
T 1k4u_P 11 PSADLILNRCSES 23 (32)
T ss_dssp CCHHHHHHSSCHH
T ss_pred CCHHHHHHHccHH
Confidence 4678999999974
No 5
>3gb3_A Killerred; fluorescent protein, genetically encoded photosensitizer, phototoxicity; HET: CRQ; 1.75A {Anthomedusae SP} PDB: 3gl4_A* 4b30_A* 2wiq_A* 2wis_A* 3a8s_A*
Probab=16.56 E-value=59 Score=30.27 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=18.6
Q ss_pred CceEEEecceeEee--cCCceeeeccCC
Q 019099 61 SKYVYVFQREYATV--DPALVDYVGTDE 86 (346)
Q Consensus 61 ~~~LYV~QrE~A~~--~P~~v~~lGSDd 86 (346)
..-=+|.|.|.|++ +|.-.+-||||+
T Consensus 207 ~~~~~v~l~E~a~A~~~~~~~~~~~~~~ 234 (235)
T 3gb3_A 207 DKRDHVCQREVAYAHSVPRITSAIGSDE 234 (235)
T ss_dssp CCSSEEEEEEEEEEECCCCCSCSCC---
T ss_pred CCCCEEEEEEEEEEEcCCceeecccCCC
Confidence 45568999999998 666788899986
No 6
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=14.82 E-value=70 Score=29.13 Aligned_cols=40 Identities=10% Similarity=0.020 Sum_probs=16.9
Q ss_pred CCceeeEEEecccCCCCCCCCCCCcccccccCCCCCcHHHHHHHHHHHHcccccEEE
Q 019099 130 LDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHV 186 (346)
Q Consensus 130 ~~~~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~~~~~~~~~hL 186 (346)
..|.+-+-|.+||.|+ =..++..+..||.+|.+=-.-..|
T Consensus 11 ~~~~~~~~l~~gF~dp-----------------v~daQ~~FR~lL~Ams~PG~i~~l 50 (210)
T 2fsu_A 11 GSGSMGMTLETAFMLP-----------------VQDAQHSFRRLLKAMSEPGVIVAL 50 (210)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHSTTCCEEC
T ss_pred CCcccceecccccCCc-----------------HHHHHHHHHHHHHHhCCCCceEeC
Confidence 4677888899999999 467888999999999865443333
No 7
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=13.49 E-value=58 Score=24.89 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=19.1
Q ss_pred CeeeCCeeeecCCCCCCCCCCchhHHHHHHHhCchhHh
Q 019099 1 MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVS 38 (346)
Q Consensus 1 ~l~v~g~~~~~~~~~~~~~~~~~~~~l~~l~~hP~l~~ 38 (346)
||.|+|..|-+. ++=..|++||.+.+
T Consensus 6 mIiv~G~nv~P~------------eIE~vl~~~p~v~~ 31 (109)
T 3lax_A 6 MIILKGVNIFPI------------QIETILLQFKELGS 31 (109)
T ss_dssp CEEETTEEECHH------------HHHHHHHTCTTEEE
T ss_pred EEEECCEEECHH------------HHHHHHHhCCCccc
Confidence 899999999885 44455678887654
No 8
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=12.49 E-value=1.2e+02 Score=23.92 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.0
Q ss_pred CchhHHHHHHHhCchhHhh
Q 019099 21 SQGSDILVALLEHPVLVSA 39 (346)
Q Consensus 21 ~~~~~~l~~l~~hP~l~~~ 39 (346)
....+|+.||.+||.|...
T Consensus 44 P~~KdL~dWLrqhP~y~vD 62 (80)
T 2ckc_A 44 PKNKDLVEWLKLHPTYTVD 62 (80)
T ss_dssp CBHHHHHHHHHHCTTEEES
T ss_pred ccccCHHHHHHHCCCcEEe
Confidence 4589999999999998653
No 9
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=11.85 E-value=99 Score=21.11 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=25.5
Q ss_pred eeeeeeCCCCeEEeccccccccchhhhhhhccCCHHHHHHhcC
Q 019099 254 LLETYDTQTDRFVIAPCRWTVRKLHIVMSLQQLSDEEILRRCS 296 (346)
Q Consensus 254 l~~iYD~~~~~l~I~Pf~w~p~~~~i~~~L~~~sD~~iL~~~S 296 (346)
+-++||+..+.|.+. .+..|-+ .-+|++|+++-|
T Consensus 3 ~~~~~D~S~~LFSVn--------FDLGf~~-~dSDde~~e~~~ 36 (37)
T 4day_C 3 MEDIFDCSRDLFSVT--------FDLGFCS-PDSDDEILEHTS 36 (37)
T ss_pred cccccccccceEEEE--------ecccccc-CCcchhhhhccC
Confidence 556899999998874 2666666 789999997644
No 10
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1
Probab=11.65 E-value=1.1e+02 Score=26.24 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=13.7
Q ss_pred eeeEEEeecCCCceEE
Q 019099 90 CVGLVIRNRRNRMTSI 105 (346)
Q Consensus 90 C~ivVlRh~~sG~t~l 105 (346)
=+|+|+=|++.|++..
T Consensus 80 ~~IvV~GH~~CGav~a 95 (170)
T 1g5c_A 80 NEIIIVGHTDCGMARL 95 (170)
T ss_dssp CEEEEEEESSCCTTSC
T ss_pred CEEEEEccCCCCchhc
Confidence 3899999999998874
Done!