BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019100
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
pdb|3HPA|B Chain B, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
Length = 479
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 171/333 (51%), Gaps = 27/333 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ H V+VTMD R R+ G+++ +RI A+G SA++ + AD+++DL+ +++P
Sbjct: 32 LVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAEL----PETADEVLDLRGHLVIP 87
Query: 81 GFVNTHVHTSQQLAKGI--ADDVDLMTWLHD--RIWPYESNMTEEDSYISTLLCGIELIH 136
G VNTH H Q L + + A + +L WL + +IW +++T E +STL EL+
Sbjct: 88 GLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIW---AHLTPEMIEVSTLTAMAELLQ 144
Query: 137 SGVTCFAE-----AGGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAVRTTDD 188
SG T ++ G + + A + +G+R + M G+ GLP V D
Sbjct: 145 SGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSVGQRDGGLPPDSVVEREPD 204
Query: 189 CIQSQKELYAKHHHAADGR---IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245
++ + L +H +GR +R+ + + L+ + +ARE+ +H H+AE
Sbjct: 205 ILRDTQRLIETYHD--EGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGVSLHTHLAE 262
Query: 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 305
N + K + + + ++ +++ AH V ++ IGL +R G V+HCP
Sbjct: 263 --NVNDIAYSREKFGMTPAEYAEDLGWVGHDVWHAHCVQLDDAGIGLFARTGTGVAHCPC 320
Query: 306 SAMRML-GFAPIKEMLHADICVSLGTDGAPSNN 337
S MR+ G AP+K+M A + V LG DG+ SN+
Sbjct: 321 SNMRLASGIAPVKKMRLAGVPVGLGVDGSASND 353
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
Length = 451
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 153/326 (46%), Gaps = 21/326 (6%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++L IV ++ V R+ + + +I + Q A +I +L +L P
Sbjct: 10 LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPRE---QAMRHGATEIRELPGMLLAP 66
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYI--STLLCGIELIHSG 138
G VN H H++ L +G+ADD+ LMTWL D IWP E ED +I T L E + G
Sbjct: 67 GLVNAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSED-FIRDGTELAIAEQVKGG 125
Query: 139 VTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY- 197
+TCF++ + + V G+RA + +D P A R + + I+ L+
Sbjct: 126 ITCFSDM-YFYPQAICGVVHDSGVRAQVAIPVLD----FPIPGA-RDSAEAIRQGMALFD 179
Query: 198 -AKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256
KHH RIRI FG +D L + + E I MHV E +E + M+
Sbjct: 180 DLKHHP----RIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAME- 234
Query: 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAP 315
+ + L ++ L + H V++ ++ +L V HCP S +++ GF P
Sbjct: 235 -RNGERPLARLHRLGLLGPRFQAVHMTQVDNDDLAMLVETNSSVIHCPESNLKLASGFCP 293
Query: 316 IKEMLHADICVSLGTDGAPSNNRMSI 341
++++ A + V++GTDGA SNN + +
Sbjct: 294 VEKLWQAGVNVAIGTDGAASNNDLDL 319
>pdb|3LNP|A Chain A, Crystal Structure Of Amidohydrolase Family Protein
Olei01672_1_465 From Oleispira Antarctica
Length = 468
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 19/281 (6%)
Query: 67 ADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIS 126
A + +DL Q+L PG+VN H H + L +G+ADD+ L TWL + +WP E+ +E ++
Sbjct: 73 ATETLDLGQQVLXPGWVNAHGHAAXSLFRGLADDLPLXTWLQEHVWPAEAQHVDE-HFVK 131
Query: 127 --TLLCGIELIHSGVTCFAEA--GGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA 182
T L E I SG T FA+ Q E A A G+RA +D P ++A
Sbjct: 132 QGTELAIAEXIQSGTTTFADXYFYPQQSGEAALAA---GIRAVCFAPVLD----FPTNYA 184
Query: 183 VRTTDDCIQSQKEL---YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 239
+ D+ I+ E + H G ++I FG +D L E ++ + +
Sbjct: 185 -QNADEYIRKAIECNDRFNNHPXNEQGLVQIGFGPHAPYTVSDEPLKEITXLSDQLDXPV 243
Query: 240 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 299
+H+ E +E ++T + L I FL + H V+ +I +L + G
Sbjct: 244 QIHLHETDFEVSESLET--FNKRPTQRLADIGFLNERVSCVHXTQVDDGDIKILQKTGAS 301
Query: 300 VSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRM 339
+ HCP S +++ GF PI ++ A+I +++GTDGA SNN +
Sbjct: 302 IIHCPESNLKLASGFCPIAKLSAANIPLAIGTDGAASNNDL 342
>pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Xanthomonas Campestris (Target Nysgrc-200456) With Bound
Zn
Length = 472
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 142/324 (43%), Gaps = 16/324 (4%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ +V ++ + V + V V I A+ +AD +F+ + + L+P
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPA--RTVSRPDAALMP 73
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMT-EEDSYISTLLCGIELIHSGV 139
G VN H H L +G+ADD+ LM WL IWP E+ + E T L E++ G
Sbjct: 74 GLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGT 133
Query: 140 TCFAEAGGQHVSEMAKAV-ELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYA 198
TC E +++ AV + G RA + +D P +WA + D+ EL+
Sbjct: 134 TCVNE--NYFFADVQAAVYKQHGFRALVGAVIID----FPTAWA-SSDDEYFARAGELHD 186
Query: 199 KHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258
+ D I F D R +A + +H+H E E V +
Sbjct: 187 QWRD--DPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETAQE--VADSVAQ 242
Query: 259 VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIK 317
+ LD++ + + L++ H + EI L + GV V HCP S +++ GF P
Sbjct: 243 YGQRPLARLDRLGLVNDRLIAVHMTQLTEAEIHLCAERGVSVVHCPESNLKLASGFCPAC 302
Query: 318 EMLHADICVSLGTDGAPSNNRMSI 341
+ A + +++GTDG SNN + +
Sbjct: 303 ALQRASVNLAIGTDGCASNNDLDM 326
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 127/274 (46%), Gaps = 27/274 (9%)
Query: 71 IDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLC 130
+DL ++++P NTH H L +G+A+D+ WL ++ P E +TE+ +Y T+L
Sbjct: 40 LDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILA 99
Query: 131 GIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDC- 189
+E+ G+ F + H +AKAV G+RA L + +D DD
Sbjct: 100 QMEMARHGIAGFVDM-YFHEEWIAKAVRDFGMRALLTRGLVDS-----------NGDDGG 147
Query: 190 -IQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248
++ +LY + +GRI + FG ++ L D A+ + +H+ E
Sbjct: 148 RLEENLKLY-NEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSK 206
Query: 249 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 308
E + D + V ++AH V + G+L VSH PAS +
Sbjct: 207 EEYDLEDILNIGLKEV-----------KTIAAHCVHLPERYFGVLKDIPFFVSHNPASNL 255
Query: 309 RM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSI 341
++ G AP++ M+ + V+LGTDGA SNN +++
Sbjct: 256 KLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNL 289
>pdb|1J6P|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Of
CytosinedemaniaseCHLOROHYDROLASE FAMILY (TM0936) FROM
THERMOTOGA Maritima At 1.9 A Resolution
Length = 418
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 121/274 (44%), Gaps = 27/274 (9%)
Query: 71 IDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLC 130
+DL +++ P NTH H L +G+A+D+ WL ++ P E +TE+ +Y T+L
Sbjct: 52 LDLSGKLVXPALFNTHTHAPXTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKXAYYGTILA 111
Query: 131 GIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDC- 189
E G+ F + H +AKAV G RA L + +D DD
Sbjct: 112 QXEXARHGIAGFVDX-YFHEEWIAKAVRDFGXRALLTRGLVDS-----------NGDDGG 159
Query: 190 -IQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248
++ +LY + +GRI + FG ++ L D A+ + +H+ E
Sbjct: 160 RLEENLKLY-NEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSK 218
Query: 249 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 308
E + D + V ++AH V + G+L VSH PAS +
Sbjct: 219 EEYDLEDILNIGLKEV-----------KTIAAHCVHLPERYFGVLKDIPFFVSHNPASNL 267
Query: 309 RM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSI 341
++ G AP++ + V+LGTDGA SNN +++
Sbjct: 268 KLGNGIAPVQRXIEHGXKVTLGTDGAASNNSLNL 301
>pdb|2PAJ|A Chain A, Crystal Structure Of An Amidohydrolase From An
Environmental Sample Of Sargasso Sea
Length = 492
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 154/341 (45%), Gaps = 33/341 (9%)
Query: 20 TMILHNAVIVT-----MDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ 74
T+I + A I+T D SRV + +V D I AIG A + + I+D
Sbjct: 12 TLIRNAAAIMTGGRGTADDPSRV-PGPDIRIVGDTIDAIGALA------PRPGETIVDAT 64
Query: 75 SQILLPGFVNTHVHTSQQLAKGIADDVD--LMTWLHDRIWPYESNMTEEDSYISTLLCGI 132
++ P +VNTH H Q L KG +D L WL + + + E ++ + I
Sbjct: 65 DCVIYPAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLI 124
Query: 133 ELIHSGVTCFAEAGGQHVSEMA--------KAVELLGLRACLVQS----TMDCGEGLPAS 180
EL SG A+ + M + E LGLR L++ T LP +
Sbjct: 125 ELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTA 184
Query: 181 WAVRTTDDCIQSQKELYAKHHHAADGRIR--IWFGIRQIMNATDRLLLETRDMAREFKTG 238
T D + + L A++H A+ +R + + + + R + ET +AR
Sbjct: 185 LRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLR 244
Query: 239 IHMHVAE-IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 297
+H H++E + Y++ K V F + ++L +++ AH V V+ EI LL++ G
Sbjct: 245 MHSHLSETVGYQDSAYSMYGK---SPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTG 301
Query: 298 VKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN 337
V+HCP S R+ G P++EM A + VS+G DGA SN
Sbjct: 302 TGVAHCPQSNGRLGSGICPVREMADAGVPVSIGVDGAASNE 342
>pdb|4F0R|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) Bound
Zn And 5'- Methylthioadenosine (Unproductive Complex)
pdb|4F0S|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) With
Bound Inosine
Length = 447
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 16/277 (5%)
Query: 67 ADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-SYI 125
AD+ ++L +L PG +N H H++ L +G+ADD L WL + IWP E +D +
Sbjct: 51 ADERLELPDHVLXPGLINLHGHSAXSLLRGLADDKALXDWLTNYIWPTEGKHVHDDFVFD 110
Query: 126 STLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRT 185
+LL E I G T + + + +A+A G R + S ++ P ++A
Sbjct: 111 GSLLAXGEXIRGGTTTINDXYFYNAA-VARAGLASGXRTFVGCSILE----FPTNYASNA 165
Query: 186 TDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245
D + E + + + +D + +A + IH H+ E
Sbjct: 166 DDYIAKGXAE---RSQFLGEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDXLIHCHIHE 222
Query: 246 IPYENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 303
E ++ +HG + L ++ L L++AH V +N E+ L +R G+ +H
Sbjct: 223 TADE----VNNSVKEHGQRPLARLQRLGLLSPRLVAAHXVHLNDAEVELAARHGLSTAHN 278
Query: 304 PASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRM 339
PAS ++ G +P+ ++ A + V +GTDGA SNN++
Sbjct: 279 PASNXKLASGISPVSKLXDAGVAVGIGTDGAASNNKL 315
>pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And
Its Product Xanthine.
pdb|4AQL|A Chain A, Human Guanine Deaminase In Complex With Valacyclovir
Length = 476
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 114/263 (43%), Gaps = 7/263 (2%)
Query: 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTE----EDSYISTLLCG 131
+ +PG V+TH+H SQ G + D+ L+ WL +P E E+ Y +
Sbjct: 94 EFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRT 153
Query: 132 IELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQ 191
++ + FA +A + G RA + + MD + P TT++ I+
Sbjct: 154 LKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPE--YKETTEESIK 211
Query: 192 SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251
+ ++ R++ R ++ ++ L+ E ++A+ I H++E E +
Sbjct: 212 ETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVE 271
Query: 252 VVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM- 310
V + + DK L N + AH +++ E+ + G ++HCP S + +
Sbjct: 272 AVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLS 331
Query: 311 LGFAPIKEMLHADICVSLGTDGA 333
GF + E+L ++ + LGTD A
Sbjct: 332 SGFLNVLEVLKHEVKIGLGTDVA 354
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 140/315 (44%), Gaps = 18/315 (5%)
Query: 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVN 84
N + + + ++ + V+ +I ++ S+++ ++ + IID ++ I++PG +
Sbjct: 16 NLIFTKTSDKFTIMKDSYIVVIDGKIASV--SSNLPDKYK--GNPIIDFRNNIIIPGMND 71
Query: 85 THVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSGVTCFA 143
H H SQ GI D +L+ WL++ +P E+ D T I +LI +G T A
Sbjct: 72 LHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVA 131
Query: 144 EAGGQHVSEMAKAVELL---GLRACLVQSTMD--CGEGLPASWAVRTTDDCIQSQKELYA 198
H + +L G+ A + + MD C + L ++ D +E+
Sbjct: 132 LFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCPDYLTENYITSLND-----TEEIIL 186
Query: 199 KHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258
K+ ++ ++ R + + ++ L+ ++ +++ + H++E E VV K
Sbjct: 187 KYKDKSN-IVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHK 245
Query: 259 VDHGTVTFLDKIEFLQNN-LLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPI 316
+ DK N L AH + + EI L+ R V + HCP S + G P+
Sbjct: 246 KSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVHCPTSNFNLGSGMMPV 305
Query: 317 KEMLHADICVSLGTD 331
++ L+ I V LG+D
Sbjct: 306 RKYLNLGINVVLGSD 320
>pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
pdb|3LS9|B Chain B, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
Length = 456
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 135/334 (40%), Gaps = 36/334 (10%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
++T D + R + + + +I A+G+ + + ID + I LPG +N+H
Sbjct: 10 VITFDDQERELEDADILIDGPKIVAVGKDLS-----DRSVSRTIDGRGMIALPGLINSHQ 64
Query: 88 HTSQQLAKGIA--DDVDLMTWLHD---------RIWPYESNMTEEDS---YISTLLCGIE 133
H + + I + V + +WL R + ++ E + + +LL GI
Sbjct: 65 HLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGIT 124
Query: 134 LIHSGVTCFAEA-GGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAVRTTDDC 189
+ F A ++ +A LG+R +S+M G+ G V D
Sbjct: 125 TVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDDLFVEPVDRV 184
Query: 190 IQSQKELYAKHHHAAD-GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248
+Q L ++H G +RI G + L MA ++ +H H E
Sbjct: 185 VQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRLHTHFYE--- 241
Query: 249 ENQVVMDTRKVDH----GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCP 304
+D DH FL+K + + + AH V EI + AGV ++H
Sbjct: 242 ----PLDAGMSDHLYGMTPWRFLEKHGWASDRVWLAHAVVPPREEIPEFADAGVAIAHLI 297
Query: 305 ASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN 337
A +RM G API+E L A I V GT G+ SN+
Sbjct: 298 APDLRMGWGLAPIREYLDAGITVGFGTTGSASND 331
>pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSB|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSC|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
pdb|3LSC|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
Length = 456
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 135/334 (40%), Gaps = 36/334 (10%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
++T D + R + + + +I A+G+ + + ID + I LPG +N+H
Sbjct: 10 VITFDDQERELEDADILIDGPKIVAVGKDLS-----DRSVSRTIDGRGMIALPGLINSHQ 64
Query: 88 HTSQQLAKGIA--DDVDLMTWLHD---------RIWPYESNMTEEDS---YISTLLCGIE 133
H + + I + V + +WL R + ++ E + + +LL GI
Sbjct: 65 HLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGIT 124
Query: 134 LIHSGVTCFAEA-GGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAVRTTDDC 189
+ F A ++ +A LG+R +S+M G+ G V D
Sbjct: 125 TVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDDLFVEPVDRV 184
Query: 190 IQSQKELYAKHHHAAD-GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248
+Q L ++H G +RI G + L MA ++ +H H +
Sbjct: 185 VQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRLHTHFYQ--- 241
Query: 249 ENQVVMDTRKVDH----GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCP 304
+D DH FL+K + + + AH V EI + AGV ++H
Sbjct: 242 ----PLDAGMSDHLYGMTPWRFLEKHGWASDRVWLAHAVVPPREEIPEFADAGVAIAHLI 297
Query: 305 ASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN 337
A +RM G API+E L A I V GT G+ SN+
Sbjct: 298 APDLRMGWGLAPIREYLDAGITVGFGTTGSASND 331
>pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase
pdb|3E0L|B Chain B, Computationally Designed Ammelide Deaminase
Length = 455
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 112/263 (42%), Gaps = 9/263 (3%)
Query: 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTE----EDSYISTLLCG 131
+ +PG V+TH+H SQ G + D+ L+ WL +P E E+ Y +
Sbjct: 75 EFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRT 134
Query: 132 IELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQ 191
++ + FA +A + G RA + + MD + P TT++ I+
Sbjct: 135 LKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPE--YKETTEESIK 192
Query: 192 SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251
+ ++ R++ + ++ L+ E ++A+ I H++E E +
Sbjct: 193 ETERFVSEMLQKNYSRVKPI--VTPGNGVSETLMGELGNIAKTRDLHIQSHISENRDEVE 250
Query: 252 VVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM- 310
V + + DK L N + AH +++ E+ + G ++HCP S + +
Sbjct: 251 AVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLS 310
Query: 311 LGFAPIKEMLHADICVSLGTDGA 333
GF + E+L ++ + LGTD A
Sbjct: 311 SGFLNVLEVLKHEVKIGLGTDVA 333
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 124/313 (39%), Gaps = 20/313 (6%)
Query: 38 FRNGGVFVVQDR-IKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96
F G+ VV D IKA G I + +I ++ +I++PGF++ H+H Q G
Sbjct: 32 FHQDGLXVVTDGVIKAFGPYEKIAAAHPGV--EITHIKDRIIVPGFIDGHIHLPQTRVLG 89
Query: 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIE-LIHSGVT---CFAEAGGQHVSE 152
+ L+ WL I+P E + + + ++ L+ +G T F + E
Sbjct: 90 AYGE-QLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEE 148
Query: 153 MAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWF 212
+ + R + +D PA + + T ++ + K L A++H GR
Sbjct: 149 LFEEASRRNXRVIAGLTGID--RNAPAEF-IDTPENFYRDSKRLIAQYHDK--GRNLYAI 203
Query: 213 GIRQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIE 271
R A+ LL + + E ++ H++E P E V+ + +K +
Sbjct: 204 TPRFAFGASPELLKACQRLKHEHPDCWVNTHISENPAECSGVLVEHPDCQDYLGVYEKFD 263
Query: 272 FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHAD----ICVS 327
+ H V++++ E S+ G V CP S + LG + D + S
Sbjct: 264 LVGPKFSGGHGVYLSNNEFRRXSKKGAAVVFCPCSNL-FLGSGLFRLGRATDPEHRVKXS 322
Query: 328 LGTDGAPSNNRMS 340
GTD NR S
Sbjct: 323 FGTD-VGGGNRFS 334
>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
Efi-500396) From Nitratiruptor Sp. Sb155-2
Length = 427
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 124/310 (40%), Gaps = 36/310 (11%)
Query: 49 RIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLH 108
+I+AI ++++++ A + ++ +LLPGF N H+H K D + WL+
Sbjct: 26 KIEAIDTVENLIKKYPNAA--VEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIPWLY 83
Query: 109 DRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACL-- 166
I E + LC + ++ + G + ++ E L+AC+
Sbjct: 84 SVIRHREDLLP---------LCDGACLEQTLSSIIQTGTTAIGAISSYGE--DLQACIDS 132
Query: 167 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLL 226
+ E + ++ A T D S E + + + R + I + L
Sbjct: 133 ALKVVYFNEVIGSNAA--TADVMYASFLERFHQSKKHENERFKAAVAIHSPYSVHYILAK 190
Query: 227 ETRDMAREFKTGIHMHVAEIPYE---------------NQVVMDTRKVDHGTVTFLDKIE 271
D+A+++ + + +H E E + + TR V+ T +FL+
Sbjct: 191 RALDIAKKYGSLVSVHFMESRAEREWLDKGSGEFAKFFKEFLNQTRPVN-DTKSFLEL-- 247
Query: 272 FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTD 331
F + + L H VW N EI ++ + HCP S R+LG + I ++ TD
Sbjct: 248 FKELHTLFVHMVWANEEEIQTIASYNAHIIHCPISN-RLLGNGVLDLEKIKSIPYAIATD 306
Query: 332 GAPSNNRMSI 341
G SN +++
Sbjct: 307 GLSSNYSLNM 316
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 35 SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91
S V + G+ + +R+ G S+ L+ +IIDL+ + ++P F ++H+H +
Sbjct: 50 SPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDE 106
>pdb|2P9B|A Chain A, Crystal Structure Of Putative Prolidase From
Bifidobacterium Longum
Length = 458
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 23 LHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
L +A IVT DK + RN + V D RI+ Q A ++ +D +I+ PG
Sbjct: 16 LAHATIVTGDKAGTILRNXTIVVGADGRIE---QVAPSIETSIPAEYHYLDGTGKIVXPG 72
Query: 82 FVNTHVHTSQQ 92
+N H H Q
Sbjct: 73 LINAHTHLFSQ 83
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 33 KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
K R G V D + G+ A + + + ++ID+ +++ PG V+ HVH
Sbjct: 6 KNGRYMNEEGKIVATDLLVQDGKIAKVAENITADNAEVIDVNGKLIAPGLVDVHVH 61
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ NA + + SR F+ G V V +++ +G++ + +I+DL + L P
Sbjct: 7 ILFKNATVFPIT--SRPFK-GDVLVSNGKVEKVGENIE------DPDAEIVDLTGKFLFP 57
Query: 81 GFVNTHVH 88
GFV+ H H
Sbjct: 58 GFVDAHSH 65
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 85/250 (34%), Gaps = 59/250 (23%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
T+I + IV+ D +S V + + V I AIG ++++ IID +
Sbjct: 4 TIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGE-ELMKDAGDA--TIIDAAGSTVT 60
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG ++THVH S P + M +IS+ L H GV
Sbjct: 61 PGLLDTHVHVSGG-----------------DYAPRQKTM----DFISSAL------HGGV 93
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVR----------TTDDC 189
T AG H K + G +A + + PA V T +D
Sbjct: 94 TTMISAGSPHFPGRPK--DAAGTKALAITLSKSYYNARPAGVKVHGGAVILEKGLTEEDF 151
Query: 190 IQSQKELYAKHHHAADGRIRIWF----GIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245
I+ +KE +W G+ I N D + FK +H
Sbjct: 152 IEMKKE-------------GVWIVGEVGLGTIKNPEDAAPMVEWAHKHGFKVQMHTGGTS 198
Query: 246 IPYENQVVMD 255
IP + V D
Sbjct: 199 IPGSSTVTAD 208
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N I+T D + ++ + I IGQ+ + + ++ID + + P
Sbjct: 2 LLIKNGEIITADSRYKA----DIYAEGETITRIGQNLE-----APPGTEVIDATGKYVFP 52
Query: 81 GFVNTHVHTSQQLAKGIADDV 101
GF++ HVH A D
Sbjct: 53 GFIDPHVHIYLPFMATFAKDT 73
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E.
Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E.
Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 43 VFVVQDRIKAIGQS--ADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V +I A+ + +DI+ + ++DL QIL PGF++ HVH
Sbjct: 28 VLVANGKIIAVASNIPSDIVPNCT-----VVDLSGQILCPGFIDQHVH 70
>pdb|1RJQ|A Chain A, The Crystal Structure Of The D-Aminoacylase Mutant D366a
pdb|1RJR|A Chain A, The Crystal Structure Of The D-Aminoacylase D366a Mutant
In Complex With 100mm Zncl2
pdb|1RK5|A Chain A, The D-Aminoacylase Mutant D366a In Complex With 100mm
Cucl2
Length = 496
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95
V V DRI A+G + + A + ID+ +++ PGF+++H H L K
Sbjct: 43 VGVRGDRIAAVGDLS------ASSARRRIDVAGKVVSPGFIDSHTHDDNYLLK 89
>pdb|1V4Y|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95
V V DRI A+G + + A + ID+ +++ PGF+++H H L K
Sbjct: 43 VGVRGDRIAAVGDLS------ASSARRRIDVAGKVVSPGFIDSHTHDDNYLLK 89
>pdb|1RJP|A Chain A, Crystal Structure Of D-Aminoacylase In Complex With
100mm Cucl2
pdb|1RK6|A Chain A, The Enzyme In Complex With 50mm Cdcl2
pdb|1V51|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95
V V DRI A+G + + A + ID+ +++ PGF+++H H L K
Sbjct: 43 VGVRGDRIAAVGDLS------ASSARRRIDVAGKVVSPGFIDSHTHDDNYLLK 89
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine
Carboxypeptidase Cc2672 From Caulobacter Crescentus
Cb15 Complexed With N-Methyl Phosphonate Derivative Of
L-Arginine
Length = 403
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V RI +IG+ D + + +DL LLPG ++ HVH
Sbjct: 25 VIVTDGRITSIGKKGDAVPAGATA----VDLPGVTLLPGLIDMHVH 66
>pdb|1M7J|A Chain A, Crystal Structure Of D-Aminoacylase Defines A Novel
Subset Of Amidohydrolases
Length = 484
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 31 MDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90
+D + R V V DRI A+G + + A + ID+ +++ PGF+++H H
Sbjct: 19 IDGTNAPGRLADVGVRGDRIAAVGDLS------ASSARRRIDVAGKVVSPGFIDSHTHDD 72
Query: 91 QQLAK 95
L K
Sbjct: 73 NYLLK 77
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N +I T S ++ + V +++ I S D + ++ID + + P
Sbjct: 5 LIIKNGIICTA---SDIYA-AEIAVNNGKVQLIAASID-----PSLGSEVIDAEGAFITP 55
Query: 81 GFVNTHVHTSQQLAKGIADDVDLM 104
G ++ HVH + L K + D VD M
Sbjct: 56 GGIDAHVHVDEPL-KLLGDVVDTM 78
>pdb|2IMR|A Chain A, Crystal Structure Of Amidohydrolase Dr_0824 From
Deinococcus Radiodurans
Length = 420
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 251 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 310
+V+ D V +LD++ L H V V +I ++RAG V CP S +
Sbjct: 273 EVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTPDDIARVARAGCAVVTCPRSNHHL 332
Query: 311 -LGFAPIKEMLHADICVSLGTDGAPSNNRMSI 341
G A + V+LGTD S +++
Sbjct: 333 ECGTFDWPAFAAAGVEVALGTDSVASGETLNV 364
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 35 SRVFRNGGVFVVQDRIKA-----IGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89
+++ +NG + D +A G+ A I Q + ++ID + + PG ++ H H
Sbjct: 2 TKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLEEKGAEVIDAKGCYVFPGGIDPHTHL 61
Query: 90 SQQLAKGIADD 100
L + D
Sbjct: 62 DMPLGGTVTKD 72
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
T+++ N +V D R F++ V V IK I ++ + + +++D ++LL
Sbjct: 9 TILIKNGTVVNDD---RYFKSD-VLVENGIIKEISKNIEPKEGI-----KVVDATDKLLL 59
Query: 80 PGFVNTHVHTSQQLAKGIA-DDVDLMT 105
PG ++TH H ++ DD D+ T
Sbjct: 60 PGGIDTHTHFQLPFMGTVSVDDFDIGT 86
>pdb|2KZ4|A Chain A, Solution Structure Of Protein Sf1141 From Shigella
Flexneri 2a, Northeast Structural Genomics Consortium
(Nesg) Target Sft2
Length = 112
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 167 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLL 226
+ T + G L AS + ++ + I S EL A G +RIW R+ +NAT R+ +
Sbjct: 25 ILETWEDGHTLWASVNMVSSKEAISSGAEL-------AIGTVRIWIRYRKDINATSRIKV 77
Query: 227 ETRDMA 232
T +A
Sbjct: 78 STGPLA 83
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 83 VNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYES--NMTEEDSYISTLLCG 131
+N H+ TS L + D + L+DR ES N E+ I+ +LCG
Sbjct: 268 INEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCG 318
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 83 VNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYES--NMTEEDSYISTLLCG 131
+N H+ TS L + D + L+DR ES N E+ I+ +LCG
Sbjct: 267 INEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCG 317
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
Length = 423
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 69 QIIDLQSQILLPGFVNTHVH 88
Q ID++ + ++PGF++ HVH
Sbjct: 48 QAIDVRGKTVMPGFIDCHVH 67
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 69 QIIDLQSQILLPGFVNTHVH 88
Q ID++ + ++PGF++ HVH
Sbjct: 48 QAIDVRGKTVMPGFIDCHVH 67
>pdb|3GGM|A Chain A, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|B Chain B, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|C Chain C, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|D Chain D, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
Length = 81
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
MIL+N I T+D + + I A+G D L + + IDL+ + +P
Sbjct: 6 MILYNGKITTLDPSQP--EVSAIAITDGLITAVG--GDELLNSATEKTKKIDLKRKRAIP 61
Query: 81 GFVNTHVHTSQQL 93
G ++H+H + L
Sbjct: 62 GLNDSHIHVIRGL 74
>pdb|3ME2|A Chain A, Crystal Structure Of Mouse Rankl-Rank Complex
pdb|4GIQ|A Chain A, Crystal Structure Of Mouse Rank Bound To Rankl
Length = 171
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELL 160
V L +W HDR W SNMT + + G +++ + CF H + + + L
Sbjct: 36 VTLSSWYHDRGWAKISNMTLSNGKLRVNQDGFYYLYANI-CFR----HHETSGSVPTDYL 90
Query: 161 GLRACLVQSTM 171
L +V++++
Sbjct: 91 QLMVYVVKTSI 101
>pdb|1JTZ|X Chain X, Crystal Structure Of TranceRANKL CYTOKINE.
pdb|1JTZ|Y Chain Y, Crystal Structure Of TranceRANKL CYTOKINE.
pdb|1JTZ|Z Chain Z, Crystal Structure Of TranceRANKL CYTOKINE
Length = 171
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELL 160
V L +W HDR W SNMT + + G +++ + CF H + + + L
Sbjct: 36 VTLSSWYHDRGWAKISNMTLSNGKLRVNQDGFYYLYANI-CFR----HHETSGSVPTDYL 90
Query: 161 GLRACLVQSTM 171
L +V++++
Sbjct: 91 QLMVYVVKTSI 101
>pdb|3QBQ|A Chain A, Crystal Structure Of Extracellular Domains Of Mouse
Rank-Rankl Complex
pdb|3QBQ|C Chain C, Crystal Structure Of Extracellular Domains Of Mouse
Rank-Rankl Complex
Length = 160
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELL 160
V L +W HDR W SNMT + + G +++ + CF H + + + L
Sbjct: 25 VTLSSWYHDRGWAKISNMTLSNGKLRVNQDGFYYLYANI-CFR----HHETSGSVPTDYL 79
Query: 161 GLRACLVQSTM 171
L +V++++
Sbjct: 80 QLMVYVVKTSI 90
>pdb|4E4D|X Chain X, Crystal Structure Of Mouse Rankl-Opg Complex
Length = 155
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELL 160
V L +W HDR W SNMT + + G +++ + CF H + + + L
Sbjct: 20 VTLSSWYHDRGWAKISNMTLSNGKLRVNQDGFYYLYANI-CFR----HHETSGSVPTDYL 74
Query: 161 GLRACLVQSTM 171
L +V++++
Sbjct: 75 QLMVYVVKTSI 85
>pdb|1S55|A Chain A, Mouse Rankl Structure At 1.9a Resolution
pdb|1S55|B Chain B, Mouse Rankl Structure At 1.9a Resolution
pdb|1S55|C Chain C, Mouse Rankl Structure At 1.9a Resolution
Length = 156
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELL 160
V L +W HDR W SNMT + + G +++ + CF H + + + L
Sbjct: 21 VTLSSWYHDRGWAKISNMTLSNGKLRVNQDGFYYLYANI-CFR----HHETSGSVPTDYL 75
Query: 161 GLRACLVQSTM 171
L +V++++
Sbjct: 76 QLMVYVVKTSI 86
>pdb|3URF|A Chain A, Human RanklOPG COMPLEX
Length = 162
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELL 160
V L +W HDR W SNMT + + G +++ + CF H + A E L
Sbjct: 21 VSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANI-CFR----HHETSGDLATEYL 75
Query: 161 GLRACLVQSTM 171
L + ++++
Sbjct: 76 QLMVYVTKTSI 86
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus
Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus
Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed
With Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed
With Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 67 ADQIIDLQSQILLPGFVNTHVH 88
AD+IID +++ PG V+ H H
Sbjct: 61 ADEIIDCSGRLVTPGLVDPHTH 82
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 69 QIIDLQSQILLPGFVNTHVH 88
+IID + I+ PGF++ HVH
Sbjct: 89 EIIDAKGLIVCPGFIDIHVH 108
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 69 QIIDLQSQILLPGFVNTHVH 88
+IID + I+ PGF++ HVH
Sbjct: 44 EIIDAKGLIVCPGFIDIHVH 63
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N ++ ++ E+RV + V +I AIGQ A ++ D ++ P
Sbjct: 25 LIIKNGTVI-LENEARVVD---IAVKGGKIAAIGQDLG-------DAKEVXDASGLVVSP 73
Query: 81 GFVNTHVHTSQ 91
G V+ H H S+
Sbjct: 74 GXVDAHTHISE 84
>pdb|2QS8|A Chain A, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
pdb|2QS8|B Chain B, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
Length = 418
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 57 ADILQQF--SQMADQIIDLQSQILLPGFVNTHVHTSQQ 92
+DI + F S + IDL+ +LPG + HVH Q+
Sbjct: 38 SDIKKGFISSNDFEDYIDLRDHTVLPGLXDXHVHFGQE 75
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 33 KESRVFRNGGVFVVQDRI--KAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
K +V +NG + I K I Q A ++ + + IID + + PGFV+ HVH
Sbjct: 5 KNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGV--DIIDAKGHFVSPGFVDVHVH 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,510,723
Number of Sequences: 62578
Number of extensions: 358503
Number of successful extensions: 1247
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 57
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)