Query 019100
Match_columns 346
No_of_seqs 120 out of 1697
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15493 5-methylthioadenosine 100.0 1.2E-48 2.5E-53 363.9 32.9 312 20-344 2-317 (435)
2 PRK06687 chlorohydrolase; Vali 100.0 2.2E-47 4.8E-52 355.1 31.5 311 21-344 2-316 (419)
3 TIGR03314 Se_ssnA putative sel 100.0 1.7E-46 3.7E-51 349.9 32.1 309 21-344 1-320 (441)
4 PRK07203 putative chlorohydrol 100.0 4.2E-45 9.2E-50 341.6 32.7 309 21-344 2-321 (442)
5 PRK12393 amidohydrolase; Provi 100.0 2.2E-44 4.7E-49 337.3 33.3 319 18-344 1-338 (457)
6 PRK07228 N-ethylammeline chlor 100.0 1.2E-43 2.5E-48 332.8 33.3 316 20-344 2-319 (445)
7 PRK09045 N-ethylammeline chlor 100.0 1.3E-43 2.9E-48 331.6 33.1 314 19-344 7-322 (443)
8 PRK08203 hydroxydechloroatrazi 100.0 1.5E-43 3.2E-48 332.2 33.2 317 21-344 4-334 (451)
9 PRK06038 N-ethylammeline chlor 100.0 2E-43 4.4E-48 328.8 33.4 309 19-345 2-311 (430)
10 cd01303 GDEase Guanine deamina 100.0 3E-43 6.4E-48 327.3 30.5 312 27-344 13-330 (429)
11 PRK06380 metal-dependent hydro 100.0 7.6E-43 1.6E-47 324.7 33.0 304 20-344 2-307 (418)
12 PRK08418 chlorohydrolase; Prov 100.0 6.7E-43 1.5E-47 322.2 30.4 309 21-345 2-325 (408)
13 PRK08393 N-ethylammeline chlor 100.0 1.7E-42 3.7E-47 322.2 32.7 308 20-345 2-310 (424)
14 PRK09228 guanine deaminase; Pr 100.0 1.1E-42 2.4E-47 323.4 31.3 317 20-344 3-333 (433)
15 COG0402 SsnA Cytosine deaminas 100.0 4.4E-42 9.5E-47 319.0 28.0 312 20-345 3-319 (421)
16 TIGR02967 guan_deamin guanine 100.0 1.3E-40 2.9E-45 308.2 31.4 300 37-344 3-308 (401)
17 cd01312 Met_dep_hydrolase_D Me 100.0 5.1E-41 1.1E-45 306.7 28.0 285 48-345 1-302 (381)
18 cd01298 ATZ_TRZ_like TRZ/ATZ f 100.0 3.4E-40 7.4E-45 307.3 31.9 313 21-344 1-314 (411)
19 PRK08204 hypothetical protein; 100.0 2.2E-40 4.7E-45 311.2 30.7 307 18-344 1-313 (449)
20 PRK06151 N-ethylammeline chlor 100.0 7E-40 1.5E-44 309.3 32.7 305 20-334 2-340 (488)
21 cd01313 Met_dep_hydrolase_E Me 100.0 3.6E-40 7.8E-45 305.6 26.3 291 36-344 6-323 (418)
22 TIGR02022 hutF formiminoglutam 100.0 1.5E-39 3.2E-44 304.3 26.6 302 21-344 4-332 (455)
23 PRK09229 N-formimino-L-glutama 100.0 1.2E-39 2.7E-44 305.5 25.1 304 18-344 2-332 (456)
24 PRK07213 chlorohydrolase; Prov 100.0 1.6E-36 3.4E-41 277.7 27.8 289 21-345 2-297 (375)
25 KOG3968 Atrazine chlorohydrola 100.0 8.8E-36 1.9E-40 259.2 17.4 303 33-336 20-334 (439)
26 PRK09230 cytosine deaminase; P 100.0 5.5E-33 1.2E-37 257.5 25.0 293 19-343 4-329 (426)
27 cd01293 Bact_CD Bacterial cyto 100.0 3.2E-33 7E-38 259.3 22.7 294 22-344 1-324 (398)
28 PRK09356 imidazolonepropionase 100.0 1.9E-31 4.1E-36 247.7 24.1 292 18-334 2-319 (406)
29 PRK14085 imidazolonepropionase 100.0 2.4E-31 5.3E-36 244.3 24.4 287 20-334 2-303 (382)
30 PRK07572 cytosine deaminase; V 100.0 9.4E-31 2E-35 243.5 24.7 291 20-344 3-326 (426)
31 TIGR01224 hutI imidazoloneprop 100.0 7.8E-30 1.7E-34 234.7 22.4 277 39-342 2-302 (377)
32 cd01305 archeal_chlorohydrolas 100.0 1.2E-29 2.7E-34 221.6 15.3 227 77-345 1-234 (263)
33 PRK05985 cytosine deaminase; P 100.0 2.5E-28 5.4E-33 225.3 22.6 290 19-344 2-313 (391)
34 cd01296 Imidazolone-5PH Imidaz 100.0 1.6E-27 3.5E-32 218.9 22.2 270 43-335 1-290 (371)
35 COG1574 Predicted metal-depend 100.0 2.4E-26 5.1E-31 214.0 26.1 299 17-342 3-444 (535)
36 PRK06846 putative deaminase; V 100.0 2.2E-26 4.7E-31 213.4 24.6 294 20-344 5-328 (410)
37 cd01314 D-HYD D-hydantoinases 99.9 3.8E-26 8.2E-31 214.6 20.6 280 21-343 1-325 (447)
38 PLN02942 dihydropyrimidinase 99.9 4.1E-25 8.9E-30 208.5 26.6 279 18-342 4-330 (486)
39 PRK07583 cytosine deaminase-li 99.9 1.1E-24 2.3E-29 203.5 25.9 289 18-333 10-333 (438)
40 TIGR02033 D-hydantoinase D-hyd 99.9 1.1E-24 2.4E-29 205.3 21.3 271 21-336 1-319 (454)
41 PRK12394 putative metallo-depe 99.9 3.4E-24 7.5E-29 196.7 22.7 263 18-341 2-285 (379)
42 PRK08323 phenylhydantoinase; V 99.9 9.7E-24 2.1E-28 199.1 21.1 273 20-342 2-323 (459)
43 cd01299 Met_dep_hydrolase_A Me 99.9 6.5E-24 1.4E-28 192.9 17.1 227 68-334 1-274 (342)
44 cd01300 YtcJ_like YtcJ_like me 99.9 2E-22 4.4E-27 191.0 23.5 112 217-335 289-414 (479)
45 COG1228 HutI Imidazolonepropio 99.9 3.9E-22 8.4E-27 181.9 18.7 287 20-337 11-320 (406)
46 PRK10657 isoaspartyl dipeptida 99.9 1.7E-21 3.7E-26 179.9 21.4 263 20-336 2-290 (388)
47 PRK09357 pyrC dihydroorotase; 99.9 3.5E-21 7.6E-26 179.7 22.0 265 20-338 2-311 (423)
48 cd01297 D-aminoacylase D-amino 99.9 9.9E-21 2.2E-25 175.8 22.4 260 20-336 1-311 (415)
49 TIGR01975 isoAsp_dipep isoaspa 99.9 1.6E-20 3.5E-25 171.1 22.3 266 21-340 2-295 (389)
50 PRK06886 hypothetical protein; 99.9 3.4E-20 7.4E-25 164.5 20.5 240 81-344 21-297 (329)
51 PRK09358 adenosine deaminase; 99.9 3.2E-20 7E-25 168.0 19.4 221 95-345 51-295 (340)
52 PRK15446 phosphonate metabolis 99.9 6.4E-20 1.4E-24 167.9 19.9 256 19-334 2-308 (383)
53 PLN02795 allantoinase 99.8 2E-19 4.4E-24 170.0 22.7 275 18-337 43-372 (505)
54 PRK09237 dihydroorotase; Provi 99.8 8.4E-19 1.8E-23 161.4 23.2 257 21-336 1-275 (380)
55 TIGR03178 allantoinase allanto 99.8 2.1E-19 4.5E-24 168.5 18.1 264 20-336 1-314 (443)
56 cd01320 ADA Adenosine deaminas 99.8 5.1E-19 1.1E-23 159.4 19.9 221 95-345 43-286 (325)
57 TIGR01792 urease_alph urease, 99.8 5.4E-19 1.2E-23 165.0 19.3 188 19-272 66-276 (567)
58 PRK13404 dihydropyrimidinase; 99.8 9E-19 2E-23 164.9 19.7 270 18-336 3-322 (477)
59 COG3964 Predicted amidohydrola 99.8 7.4E-19 1.6E-23 147.1 16.1 258 16-333 1-276 (386)
60 PRK06189 allantoinase; Provisi 99.8 1E-17 2.2E-22 157.2 24.8 274 18-344 2-329 (451)
61 PRK07627 dihydroorotase; Provi 99.8 8.3E-18 1.8E-22 156.0 23.6 263 20-336 2-311 (425)
62 cd01315 L-HYD_ALN L-Hydantoina 99.8 7.3E-18 1.6E-22 158.6 23.6 176 20-246 1-185 (447)
63 KOG2584 Dihydroorotase and rel 99.8 4.2E-18 9E-23 149.0 20.0 274 18-337 13-337 (522)
64 TIGR01430 aden_deam adenosine 99.8 2.3E-18 5.1E-23 154.9 18.8 213 101-345 48-285 (324)
65 PRK07575 dihydroorotase; Provi 99.8 2.6E-18 5.6E-23 160.4 19.6 259 18-337 2-309 (438)
66 PRK09236 dihydroorotase; Revie 99.8 4.4E-18 9.4E-23 159.4 20.4 93 224-335 217-313 (444)
67 TIGR02318 phosphono_phnM phosp 99.8 2.1E-17 4.6E-22 150.9 23.6 94 221-334 207-303 (376)
68 cd01292 metallo-dependent_hydr 99.8 4E-18 8.7E-23 149.6 18.0 231 82-344 1-247 (275)
69 PRK07369 dihydroorotase; Provi 99.8 8.3E-17 1.8E-21 148.9 25.0 265 18-336 1-312 (418)
70 PRK13309 ureC urease subunit a 99.8 2.5E-17 5.3E-22 154.2 20.9 164 19-244 68-253 (572)
71 cd01308 Isoaspartyl-dipeptidas 99.8 7.6E-17 1.7E-21 148.9 24.1 258 21-333 2-286 (387)
72 PRK02382 dihydroorotase; Provi 99.8 1.8E-16 4E-21 148.5 25.7 265 18-336 1-307 (443)
73 cd01307 Met_dep_hydrolase_B Me 99.8 5.2E-17 1.1E-21 147.1 19.8 235 42-334 1-254 (338)
74 PRK13207 ureC urease subunit a 99.8 3E-16 6.5E-21 146.6 23.5 241 19-335 67-365 (568)
75 cd01309 Met_dep_hydrolase_C Me 99.7 3.1E-17 6.7E-22 149.4 15.3 254 47-334 1-282 (359)
76 PRK09059 dihydroorotase; Valid 99.7 1.2E-15 2.5E-20 141.9 23.8 269 17-336 1-316 (429)
77 PRK09061 D-glutamate deacylase 99.7 8.5E-16 1.9E-20 145.6 23.0 230 19-305 19-285 (509)
78 COG0044 PyrC Dihydroorotase an 99.7 4.5E-16 9.7E-21 142.9 20.0 263 20-336 2-308 (430)
79 PRK13206 ureC urease subunit a 99.7 1E-15 2.2E-20 142.8 22.5 164 19-245 71-256 (573)
80 cd00854 NagA N-acetylglucosami 99.7 9.7E-17 2.1E-21 146.9 14.1 242 21-308 1-274 (374)
81 PLN02303 urease 99.7 9.2E-16 2E-20 147.1 20.9 191 19-275 334-549 (837)
82 TIGR01178 ade adenine deaminas 99.7 4.9E-15 1.1E-19 140.8 24.9 242 20-332 1-252 (552)
83 PRK13308 ureC urease subunit a 99.7 3.6E-15 7.9E-20 138.5 23.3 165 19-245 68-250 (569)
84 PRK09060 dihydroorotase; Valid 99.7 5.3E-15 1.2E-19 138.4 22.6 92 19-147 5-96 (444)
85 PRK08044 allantoinase; Provisi 99.7 1.1E-14 2.4E-19 136.3 24.2 261 19-336 3-320 (449)
86 cd00375 Urease_alpha Urease al 99.7 1.2E-14 2.6E-19 135.1 22.5 164 19-245 65-250 (567)
87 TIGR00857 pyrC_multi dihydroor 99.7 2.3E-14 5.1E-19 133.0 23.8 251 39-336 4-297 (411)
88 PRK08417 dihydroorotase; Provi 99.7 7.5E-15 1.6E-19 135.0 19.4 237 43-336 1-280 (386)
89 PF01979 Amidohydro_1: Amidohy 99.7 1.7E-16 3.8E-21 143.6 8.0 228 77-332 1-282 (333)
90 PRK13985 ureB urease subunit b 99.6 6.6E-14 1.4E-18 129.7 23.8 166 19-247 65-252 (568)
91 TIGR00221 nagA N-acetylglucosa 99.6 1.3E-14 2.8E-19 132.1 18.1 197 20-256 4-208 (380)
92 TIGR03583 EF_0837 probable ami 99.6 2E-13 4.4E-18 125.0 20.1 218 20-303 2-240 (365)
93 PRK11170 nagA N-acetylglucosam 99.6 2.1E-13 4.6E-18 124.5 18.1 198 21-256 2-206 (382)
94 PF13594 Amidohydro_5: Amidohy 99.6 9.7E-15 2.1E-19 99.5 6.9 44 43-90 1-44 (68)
95 cd01317 DHOase_IIa Dihydroorot 99.6 5.5E-14 1.2E-18 129.0 14.1 104 223-341 172-275 (374)
96 COG1820 NagA N-acetylglucosami 99.5 3.6E-13 7.8E-18 119.0 16.6 237 21-297 2-262 (380)
97 PRK10027 cryptic adenine deami 99.5 2.3E-12 4.9E-17 122.9 23.1 245 19-334 30-287 (588)
98 cd00443 ADA_AMPD Adenosine/AMP 99.5 9.8E-13 2.1E-17 117.0 17.6 118 211-345 138-266 (305)
99 COG1001 AdeC Adenine deaminase 99.5 4.9E-12 1.1E-16 116.7 21.2 182 18-247 23-213 (584)
100 TIGR03121 one_C_dehyd_A formyl 99.4 3E-12 6.5E-17 119.6 15.1 113 21-146 2-119 (556)
101 PRK01211 dihydroorotase; Provi 99.4 1.2E-11 2.6E-16 114.0 18.4 73 39-147 14-86 (409)
102 PRK04250 dihydroorotase; Provi 99.4 1.5E-11 3.3E-16 113.3 17.0 85 25-147 3-87 (398)
103 PTZ00124 adenosine deaminase; 99.3 8.5E-11 1.8E-15 106.0 17.8 120 210-345 194-322 (362)
104 PRK00369 pyrC dihydroorotase; 99.3 6.2E-11 1.3E-15 108.7 17.1 75 39-147 12-87 (392)
105 cd01304 FMDH_A Formylmethanofu 99.3 1.4E-11 3E-16 114.6 12.6 60 23-91 1-60 (541)
106 COG3454 Metal-dependent hydrol 99.3 4E-11 8.6E-16 102.2 12.8 57 22-89 2-58 (377)
107 cd01321 ADGF Adenosine deamina 99.3 1.1E-10 2.3E-15 105.1 16.3 125 210-345 164-299 (345)
108 cd01295 AdeC Adenine deaminase 99.3 1.9E-10 4.1E-15 107.3 17.3 201 72-334 1-213 (422)
109 PF07969 Amidohydro_3: Amidohy 99.3 1.2E-10 2.5E-15 108.5 15.3 108 213-334 215-336 (404)
110 COG1816 Add Adenosine deaminas 99.2 3.6E-10 7.7E-15 100.0 13.0 112 218-345 180-298 (345)
111 cd01302 Cyclic_amidohydrolases 99.2 1.3E-09 2.8E-14 98.6 16.3 201 76-336 1-231 (337)
112 COG3653 N-acyl-D-aspartate/D-g 99.1 5.9E-11 1.3E-15 104.6 6.1 67 19-91 6-72 (579)
113 PF00962 A_deaminase: Adenosin 99.1 5.9E-10 1.3E-14 100.9 12.8 196 119-345 72-293 (331)
114 COG0804 UreC Urea amidohydrola 99.1 1.4E-09 3.1E-14 95.2 13.8 163 19-244 67-249 (568)
115 COG1229 FwdA Formylmethanofura 99.1 6.7E-09 1.4E-13 91.3 15.6 66 18-91 2-67 (575)
116 cd01306 PhnM PhnM is believed 99.1 8.6E-09 1.9E-13 91.7 16.4 96 220-335 160-258 (325)
117 cd01318 DHOase_IIb Dihydroorot 99.1 1.4E-08 3E-13 92.6 17.7 111 220-336 108-253 (361)
118 cd00530 PTE Phosphotriesterase 99.0 4.5E-08 9.8E-13 87.0 19.6 198 124-334 31-247 (293)
119 KOG3892 N-acetyl-glucosamine-6 99.0 9.8E-09 2.1E-13 85.6 12.0 144 21-192 14-163 (407)
120 TIGR01431 adm_rel adenosine de 98.9 3.1E-08 6.7E-13 92.7 12.7 125 210-345 291-425 (479)
121 KOG1097 Adenine deaminase/aden 98.7 3.3E-07 7.1E-12 81.6 13.8 192 122-339 118-336 (399)
122 PRK09875 putative hydrolase; P 98.7 3.4E-06 7.3E-11 74.1 20.1 197 127-335 36-247 (292)
123 PF13147 Amidohydro_4: Amidohy 98.7 1.5E-07 3.2E-12 83.4 10.1 26 311-336 224-249 (304)
124 cd01294 DHOase Dihydroorotase 98.6 5.2E-06 1.1E-10 75.2 17.5 110 221-336 111-247 (335)
125 TIGR00010 hydrolase, TatD fami 98.6 1.4E-06 2.9E-11 75.7 13.1 95 223-334 108-204 (252)
126 cd01310 TatD_DNAse TatD like p 98.5 2.9E-06 6.2E-11 73.5 14.2 96 222-334 107-204 (251)
127 PRK11449 putative deoxyribonuc 98.5 9.8E-06 2.1E-10 70.3 16.1 96 222-334 113-210 (258)
128 PF02126 PTE: Phosphotriestera 98.4 1.2E-05 2.7E-10 71.1 14.4 197 125-333 38-259 (308)
129 cd01316 CAD_DHOase The eukaryo 98.3 1.1E-05 2.4E-10 73.0 13.4 45 76-147 2-46 (344)
130 PRK10812 putative DNAse; Provi 98.3 1.2E-05 2.7E-10 69.9 13.1 97 222-334 110-208 (265)
131 COG0084 TatD Mg-dependent DNas 98.2 0.00017 3.8E-09 61.9 16.7 95 223-334 112-208 (256)
132 PRK10425 DNase TatD; Provision 98.1 7.7E-05 1.7E-09 64.6 14.0 97 223-334 108-206 (258)
133 COG1735 Php Predicted metal-de 98.0 0.00058 1.3E-08 58.9 16.7 193 124-331 47-257 (316)
134 cd01319 AMPD AMP deaminase (AM 97.9 1.5E-05 3.3E-10 74.4 5.5 92 237-345 327-425 (496)
135 PF01026 TatD_DNase: TatD rela 97.9 9.6E-05 2.1E-09 64.2 9.8 174 132-333 21-207 (255)
136 TIGR01429 AMP_deaminase AMP de 97.9 3.6E-05 7.9E-10 73.2 7.0 95 234-345 433-537 (611)
137 PLN03055 AMP deaminase; Provis 97.8 2.7E-05 5.8E-10 73.9 5.2 92 237-345 417-515 (602)
138 COG1099 Predicted metal-depend 97.7 0.0021 4.6E-08 52.8 13.5 109 212-334 100-214 (254)
139 PLN02768 AMP deaminase 97.6 5.7E-05 1.2E-09 73.3 4.4 92 237-345 650-748 (835)
140 PTZ00310 AMP deaminase; Provis 97.5 0.00013 2.8E-09 75.0 4.8 91 237-345 1110-1208(1453)
141 PLN02599 dihydroorotase 97.4 0.0057 1.2E-07 55.7 13.6 110 222-336 135-272 (364)
142 PRK05451 dihydroorotase; Provi 97.3 0.012 2.7E-07 53.4 15.3 112 221-336 116-253 (345)
143 cd01311 PDC_hydrolase 2-pyrone 97.2 0.02 4.4E-07 49.9 14.7 101 221-336 108-225 (263)
144 TIGR00856 pyrC_dimer dihydroor 97.1 0.032 6.9E-07 50.6 15.4 111 221-336 113-250 (341)
145 PTZ00310 AMP deaminase; Provis 96.9 0.0009 2E-08 69.1 3.9 68 278-345 504-579 (1453)
146 PF00449 Urease_alpha: Urease 96.2 0.019 4.2E-07 41.9 6.1 37 18-58 65-101 (121)
147 PF12890 DHOase: Dihydro-orota 93.4 0.024 5.2E-07 42.8 0.2 73 221-306 64-138 (142)
148 COG1387 HIS2 Histidinol phosph 92.4 5.9 0.00013 33.9 13.4 50 288-338 151-201 (237)
149 PRK08609 hypothetical protein; 89.8 21 0.00046 35.0 16.1 46 290-336 485-531 (570)
150 KOG3020 TatD-related DNase [Re 87.7 2.7 5.9E-05 36.9 7.5 95 224-336 136-233 (296)
151 COG0418 PyrC Dihydroorotase [N 87.0 7.3 0.00016 34.2 9.4 108 222-334 117-251 (344)
152 PF04909 Amidohydro_2: Amidohy 86.1 2.4 5.1E-05 36.7 6.5 114 218-335 112-236 (273)
153 TIGR01362 KDO8P_synth 3-deoxy- 84.2 26 0.00057 30.2 12.4 114 218-332 54-184 (258)
154 PRK07945 hypothetical protein; 83.1 36 0.00077 30.9 13.8 49 288-336 249-297 (335)
155 cd01301 rDP_like renal dipepti 82.9 10 0.00022 33.9 9.0 97 219-333 151-266 (309)
156 COG2159 Predicted metal-depend 82.4 32 0.00069 30.5 11.9 113 221-337 142-259 (293)
157 PRK07328 histidinol-phosphatas 82.4 33 0.00071 29.9 15.9 47 288-334 181-232 (269)
158 PRK12595 bifunctional 3-deoxy- 80.4 29 0.00062 31.8 11.1 120 214-334 160-298 (360)
159 PRK05198 2-dehydro-3-deoxyphos 79.7 40 0.00086 29.2 12.5 114 218-332 62-192 (264)
160 KOG1096 Adenosine monophosphat 79.4 1.7 3.7E-05 42.0 3.0 80 237-335 587-673 (768)
161 PRK06552 keto-hydroxyglutarate 78.9 38 0.00082 28.5 10.8 78 219-307 21-98 (213)
162 TIGR01182 eda Entner-Doudoroff 78.6 24 0.00052 29.4 9.2 75 219-307 16-90 (204)
163 PF01244 Peptidase_M19: Membra 78.3 6.3 0.00014 35.4 6.2 52 281-332 210-273 (320)
164 PRK06015 keto-hydroxyglutarate 74.9 33 0.00072 28.5 9.0 75 219-307 12-86 (201)
165 PRK07114 keto-hydroxyglutarate 73.4 56 0.0012 27.7 10.3 79 219-307 23-101 (222)
166 COG1831 Predicted metal-depend 72.9 63 0.0014 28.1 10.3 94 220-333 142-235 (285)
167 COG3618 Predicted metal-depend 70.7 64 0.0014 28.3 10.0 50 222-285 123-172 (279)
168 PRK12457 2-dehydro-3-deoxyphos 68.8 81 0.0017 27.6 12.4 113 219-332 69-200 (281)
169 TIGR01496 DHPS dihydropteroate 68.4 42 0.00092 29.1 8.7 62 225-305 63-126 (257)
170 TIGR01361 DAHP_synth_Bsub phos 68.2 81 0.0018 27.4 12.5 118 216-334 69-205 (260)
171 COG2185 Sbm Methylmalonyl-CoA 68.0 56 0.0012 25.5 8.2 72 227-307 54-125 (143)
172 PRK13397 3-deoxy-7-phosphohept 67.4 82 0.0018 27.2 10.9 115 218-333 61-194 (250)
173 TIGR00640 acid_CoA_mut_C methy 66.3 57 0.0012 25.0 8.6 72 227-307 44-115 (132)
174 PRK06361 hypothetical protein; 66.1 77 0.0017 26.4 15.9 57 278-334 116-172 (212)
175 COG2876 AroA 3-deoxy-D-arabino 65.5 92 0.002 27.1 10.8 96 208-304 81-187 (286)
176 COG0044 PyrC Dihydroorotase an 65.3 17 0.00037 34.2 6.0 29 218-246 153-181 (430)
177 cd02072 Glm_B12_BD B12 binding 63.4 65 0.0014 24.6 8.4 72 227-306 41-117 (128)
178 TIGR01856 hisJ_fam histidinol 61.4 18 0.00038 31.3 5.1 45 290-334 191-240 (253)
179 PRK09140 2-dehydro-3-deoxy-6-p 61.4 96 0.0021 25.9 10.4 76 219-307 18-93 (206)
180 PRK05718 keto-hydroxyglutarate 60.2 83 0.0018 26.4 8.7 94 219-326 23-131 (212)
181 COG0800 Eda 2-keto-3-deoxy-6-p 59.3 65 0.0014 26.9 7.6 73 221-307 23-95 (211)
182 cd01317 DHOase_IIa Dihydroorot 58.3 67 0.0014 29.5 8.6 137 68-247 2-143 (374)
183 PRK15108 biotin synthase; Prov 57.3 98 0.0021 28.2 9.4 21 222-242 110-130 (345)
184 PRK08392 hypothetical protein; 56.8 17 0.00038 30.4 4.2 45 290-336 143-187 (215)
185 PF01081 Aldolase: KDPG and KH 53.8 40 0.00086 27.9 5.6 74 220-307 17-90 (196)
186 TIGR03586 PseI pseudaminic aci 53.5 1.7E+02 0.0038 26.4 10.3 111 220-334 74-203 (327)
187 PRK08123 histidinol-phosphatas 53.1 20 0.00044 31.3 4.1 47 289-335 202-254 (270)
188 PF05913 DUF871: Bacterial pro 49.3 89 0.0019 28.6 7.6 102 193-306 16-120 (357)
189 TIGR01501 MthylAspMutase methy 49.2 1.2E+02 0.0026 23.3 8.0 43 263-306 72-119 (134)
190 COG0788 PurU Formyltetrahydrof 49.0 65 0.0014 27.9 6.2 93 228-334 130-226 (287)
191 COG0299 PurN Folate-dependent 49.0 1.1E+02 0.0025 25.2 7.3 86 228-326 42-131 (200)
192 PRK06740 histidinol-phosphatas 48.9 33 0.00072 31.0 4.9 46 290-335 245-296 (331)
193 PLN02389 biotin synthase 48.7 2.1E+02 0.0046 26.5 10.1 14 225-238 155-168 (379)
194 COG1751 Uncharacterized conser 47.5 1.4E+02 0.003 23.6 9.6 96 219-328 10-128 (186)
195 PRK05588 histidinol-phosphatas 46.5 41 0.00089 29.0 5.0 47 288-334 170-221 (255)
196 COG4464 CapC Capsular polysacc 44.5 31 0.00067 28.9 3.5 17 130-146 25-41 (254)
197 PRK07329 hypothetical protein; 43.8 34 0.00073 29.4 4.0 46 290-335 171-221 (246)
198 TIGR02109 PQQ_syn_pqqE coenzym 42.1 2.1E+02 0.0045 26.0 9.1 30 216-246 62-91 (358)
199 TIGR03569 NeuB_NnaB N-acetylne 41.9 2.2E+02 0.0048 25.8 8.9 111 220-334 73-204 (329)
200 PLN03033 2-dehydro-3-deoxyphos 41.1 2.5E+02 0.0055 24.7 12.9 113 219-332 69-198 (290)
201 TIGR01162 purE phosphoribosyla 40.9 1.8E+02 0.004 23.0 9.4 25 221-245 10-34 (156)
202 PRK09613 thiH thiamine biosynt 39.6 3E+02 0.0064 26.4 9.8 73 219-300 114-193 (469)
203 PRK00912 ribonuclease P protei 39.5 1.9E+02 0.0041 24.6 7.9 51 286-336 120-180 (237)
204 PRK13398 3-deoxy-7-phosphohept 39.3 2.6E+02 0.0057 24.4 13.1 118 216-334 71-207 (266)
205 PF02811 PHP: PHP domain; Int 38.8 1.1E+02 0.0023 24.1 6.1 39 132-170 23-64 (175)
206 PF02702 KdpD: Osmosensitive K 37.6 1.2E+02 0.0026 25.3 5.9 111 206-328 4-121 (211)
207 PRK07455 keto-hydroxyglutarate 37.6 2.3E+02 0.0049 23.2 8.6 71 221-305 22-92 (187)
208 COG3589 Uncharacterized conser 36.8 1.3E+02 0.0028 27.2 6.3 74 223-306 49-122 (360)
209 COG0502 BioB Biotin synthase a 36.2 1.5E+02 0.0033 26.8 6.9 71 219-300 83-157 (335)
210 COG5016 Pyruvate/oxaloacetate 35.7 3.7E+02 0.0081 25.1 9.7 104 130-248 103-211 (472)
211 COG2355 Zn-dependent dipeptida 34.5 1.7E+02 0.0036 26.3 6.8 90 227-333 153-263 (313)
212 PRK13396 3-deoxy-7-phosphohept 33.9 3.7E+02 0.0081 24.6 11.9 110 218-328 147-276 (352)
213 PRK01060 endonuclease IV; Prov 33.8 3.2E+02 0.0068 23.7 8.8 21 224-244 90-111 (281)
214 smart00518 AP2Ec AP endonuclea 32.3 3.3E+02 0.0071 23.4 10.0 25 219-243 41-65 (273)
215 COG0826 Collagenase and relate 32.2 4E+02 0.0086 24.4 9.1 26 218-243 44-69 (347)
216 cd00452 KDPG_aldolase KDPG and 32.0 2.8E+02 0.0061 22.6 9.1 29 277-305 56-84 (190)
217 PRK08185 hypothetical protein; 30.8 3.8E+02 0.0082 23.7 10.5 110 211-335 43-177 (283)
218 PF10055 DUF2292: Uncharacteri 30.5 60 0.0013 18.9 2.3 16 42-57 19-34 (38)
219 cd00946 FBP_aldolase_IIA Class 30.5 4.2E+02 0.0092 24.2 9.0 73 225-303 76-160 (345)
220 COG3977 Alanine-alpha-ketoisov 29.9 1.8E+02 0.0039 26.0 6.1 85 219-306 195-283 (417)
221 PRK08044 allantoinase; Provisi 29.9 1.3E+02 0.0029 28.4 6.0 66 221-304 220-289 (449)
222 COG0269 SgbH 3-hexulose-6-phos 29.2 3.5E+02 0.0076 22.8 9.0 88 221-327 91-189 (217)
223 PRK13802 bifunctional indole-3 28.9 6.3E+02 0.014 25.7 11.7 116 219-336 143-273 (695)
224 PF03851 UvdE: UV-endonuclease 28.8 2.6E+02 0.0056 24.6 7.0 21 223-243 87-107 (275)
225 PF07287 DUF1446: Protein of u 28.4 4.7E+02 0.01 24.1 9.3 18 312-329 149-166 (362)
226 PRK09248 putative hydrolase; V 27.6 78 0.0017 27.1 3.7 48 288-335 144-197 (246)
227 PF04273 DUF442: Putative phos 27.4 2.6E+02 0.0055 20.7 7.7 29 219-247 69-97 (110)
228 TIGR01178 ade adenine deaminas 27.1 2E+02 0.0042 28.3 6.6 46 277-328 177-222 (552)
229 KOG0202 Ca2+ transporting ATPa 26.6 5.1E+02 0.011 26.9 9.1 38 212-249 576-613 (972)
230 PRK05672 dnaE2 error-prone DNA 26.4 1.4E+02 0.0031 31.8 5.8 67 78-171 1-70 (1046)
231 PRK02261 methylaspartate mutas 26.0 3.1E+02 0.0067 21.1 8.1 72 227-306 45-121 (137)
232 PRK08883 ribulose-phosphate 3- 25.9 2.5E+02 0.0054 23.7 6.3 70 219-305 43-116 (220)
233 PRK12737 gatY tagatose-bisphos 25.8 4.7E+02 0.01 23.1 10.1 76 211-301 48-132 (284)
234 PRK10490 sensor protein KdpD; 25.7 5.9E+02 0.013 26.7 10.2 112 205-328 22-140 (895)
235 KOG2902 Dihydroorotase [Nucleo 25.6 4.4E+02 0.0095 22.7 11.5 17 77-93 5-21 (344)
236 PRK06256 biotin synthase; Vali 25.5 5E+02 0.011 23.3 9.6 11 224-234 127-137 (336)
237 PF12890 DHOase: Dihydro-orota 25.4 40 0.00087 25.9 1.2 17 75-91 1-17 (142)
238 TIGR02351 thiH thiazole biosyn 25.0 2.6E+02 0.0056 25.7 6.7 15 314-328 205-220 (366)
239 TIGR01524 ATPase-IIIB_Mg magne 25.0 6.1E+02 0.013 26.5 10.1 95 221-330 516-629 (867)
240 PRK02308 uvsE putative UV dama 24.8 3.7E+02 0.008 24.0 7.4 25 222-246 129-157 (303)
241 PRK08005 epimerase; Validated 24.8 3.2E+02 0.0069 22.9 6.6 69 219-305 44-116 (210)
242 PF03102 NeuB: NeuB family; I 24.5 3.5E+02 0.0076 23.2 6.9 84 219-305 52-150 (241)
243 PRK14042 pyruvate carboxylase 24.3 7.2E+02 0.016 24.7 11.1 104 130-248 101-209 (596)
244 PRK07627 dihydroorotase; Provi 23.8 2.1E+02 0.0046 26.9 6.0 31 222-252 212-242 (425)
245 PRK09195 gatY tagatose-bisphos 23.8 5.1E+02 0.011 22.9 9.9 77 211-302 48-133 (284)
246 PRK07369 dihydroorotase; Provi 23.5 1.7E+02 0.0037 27.4 5.4 32 222-253 213-244 (418)
247 TIGR03849 arch_ComA phosphosul 23.2 4.7E+02 0.01 22.4 7.3 75 220-301 38-117 (237)
248 TIGR00629 uvde UV damage endon 23.2 3.6E+02 0.0078 24.2 6.9 22 223-244 94-115 (312)
249 PF00834 Ribul_P_3_epim: Ribul 23.2 1.6E+02 0.0034 24.5 4.5 70 219-306 43-116 (201)
250 cd01733 LSm10 The eukaryotic S 22.2 2.4E+02 0.0052 19.3 4.5 33 20-54 44-76 (78)
251 cd01725 LSm2 The eukaryotic Sm 22.1 2.3E+02 0.0051 19.5 4.5 38 20-57 36-73 (81)
252 PRK13010 purU formyltetrahydro 21.4 5E+02 0.011 23.0 7.5 84 229-328 134-223 (289)
253 COG0036 Rpe Pentose-5-phosphat 21.1 5.1E+02 0.011 21.9 8.1 69 219-306 47-120 (220)
254 TIGR00857 pyrC_multi dihydroor 20.9 2.2E+02 0.0047 26.6 5.5 30 223-252 199-228 (411)
255 PRK13307 bifunctional formalde 20.8 6.9E+02 0.015 23.3 11.1 91 221-331 261-360 (391)
256 PRK14057 epimerase; Provisiona 20.8 3.4E+02 0.0074 23.5 6.1 68 219-306 63-143 (254)
257 COG1416 Uncharacterized conser 20.5 2.7E+02 0.0058 20.7 4.6 63 236-306 3-74 (112)
258 PRK09722 allulose-6-phosphate 20.5 4E+02 0.0087 22.7 6.5 69 219-305 45-118 (229)
259 PRK07360 FO synthase subunit 2 20.5 2.7E+02 0.0059 25.6 5.9 23 222-244 124-146 (371)
260 cd01723 LSm4 The eukaryotic Sm 20.4 2.8E+02 0.006 18.8 4.6 36 20-56 36-71 (76)
261 PRK05301 pyrroloquinoline quin 20.2 5.5E+02 0.012 23.5 8.0 29 216-245 71-99 (378)
262 PRK08091 ribulose-phosphate 3- 20.2 3.5E+02 0.0075 23.1 6.0 67 219-305 56-128 (228)
263 TIGR01517 ATPase-IIB_Ca plasma 20.2 6.5E+02 0.014 26.6 9.2 90 221-329 580-694 (941)
264 PF03932 CutC: CutC family; I 20.1 5.1E+02 0.011 21.5 8.3 101 205-325 87-194 (201)
265 PRK01122 potassium-transportin 20.1 7.1E+02 0.015 25.2 9.0 86 221-331 446-535 (679)
No 1
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=100.00 E-value=1.2e-48 Score=363.90 Aligned_cols=312 Identities=29% Similarity=0.428 Sum_probs=271.7
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|+.|++++++.+++++++|+|+||+|++|++..... ..+++++||++|++|+|||||+|+|+.++.+||...
T Consensus 2 ~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~---~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~ 78 (435)
T PRK15493 2 KTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFAS---DFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGD 78 (435)
T ss_pred eEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccc---cCCCCeEEeCCCCEEccceeecccCccchhhhccCC
Confidence 47999999999887778889999999999999999853221 123468999999999999999999999999999988
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc---CCHHHHHHHHHHhCCeEEEecccccCCCC
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGEG 176 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 176 (346)
+.++.+|+...+|+....+++++.+...+.++.+++++|+||+.|+.. ...+...+.+.+.|+|.++++..++.+.
T Consensus 79 ~~~l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~- 157 (435)
T PRK15493 79 DMLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGT- 157 (435)
T ss_pred CCCHHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccccCHHHHHHHHHHcCCcEEEeeeecCCCC-
Confidence 888899998888998888899999999999999999999999999752 2345667888899999999877765431
Q ss_pred CCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh
Q 019100 177 LPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256 (346)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 256 (346)
+. ...+.+++..++++++... .+++++.++|+.+++++++.+++++++|+++|+++++|+.|+..+.+.+.+.
T Consensus 158 -~~-----~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~ 230 (435)
T PRK15493 158 -KE-----DEKKAIEEAEKYVKRYYNE-SGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQ 230 (435)
T ss_pred -Cc-----cHHHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHH
Confidence 11 2345566677777776542 4789999999999999999999999999999999999999999888888888
Q ss_pred cCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCC
Q 019100 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 257 ~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
+|.. +++++++.|+++++++++||++++++|++++++.|+.+++||.+|.++ .+.+|+++++++|+++++|||+.++
T Consensus 231 ~g~~--~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~~~ 308 (435)
T PRK15493 231 YGKR--PVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKLGSGIANVKAMLEAGIKVGIATDSVAS 308 (435)
T ss_pred hCCC--HHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEEChHHHHHHhcCcccHHHHHHCCCeEEEccCcccc
Confidence 8865 899999999999999999999999999999999999999999999888 8899999999999999999999888
Q ss_pred CCCCCCCCC
Q 019100 336 NNRMSIGPF 344 (346)
Q Consensus 336 ~~~~~~~~~ 344 (346)
+++.||+++
T Consensus 309 ~~~~d~~~~ 317 (435)
T PRK15493 309 NNNLDMFEE 317 (435)
T ss_pred CCCcCHHHH
Confidence 888999875
No 2
>PRK06687 chlorohydrolase; Validated
Probab=100.00 E-value=2.2e-47 Score=355.07 Aligned_cols=311 Identities=26% Similarity=0.440 Sum_probs=269.4
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|+++++...++++++|+|+||+|++|++..+.. .....++||++|++|+|||||+|+|+.++.+||...+
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~---~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~ 78 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAF---LEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDD 78 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCccccc---ccccCeEEeCCCCEEccceeeeccCCCccccccccCC
Confidence 5899999999988778889999999999999999865321 1224689999999999999999999999999998877
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc---CCHHHHHHHHHHhCCeEEEecccccCCCCC
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGEGL 177 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~ 177 (346)
.++.+|+...+|+....+++++.+...+.++.+++++||||+.+++. ...+...+++.+.|+|..+++.+++..
T Consensus 79 ~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~--- 155 (419)
T PRK06687 79 SNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNGVDIQQIYQVVKTSKMRCYFSPTLFSSE--- 155 (419)
T ss_pred CCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhccccccHHHHHHHHHHhCCceEeccccccCC---
Confidence 78999999888888888888888888888999999999999999853 235667788889999998776554322
Q ss_pred CcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhc
Q 019100 178 PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257 (346)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 257 (346)
. ....+.+++..++++++.....++++.+++++.++.++++.+++++++|+++|+++++|+.|+..+.+.+.+.+
T Consensus 156 -~----~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~ 230 (419)
T PRK06687 156 -T----ETTAETISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRY 230 (419)
T ss_pred -c----ccHHHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHH
Confidence 1 12345566777888877665567789999999999999999999999999999999999999988888888888
Q ss_pred CCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 258 g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
|.. +++++++.|+++++++++|+.+++++|++++++.|+.+++||.+|.++ .+.+|+++++++|+++++|||+.+++
T Consensus 231 g~~--~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~~~~ 308 (419)
T PRK06687 231 GKR--PLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNPISNLKLASGIAPIIQLQKAGVAVGIATDSVASN 308 (419)
T ss_pred CcC--HHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECcHHhhhhccCCCcHHHHHHCCCeEEEeCCCCCCC
Confidence 865 899999999999999999999999999999999999999999999888 88999999999999999999998888
Q ss_pred CCCCCCCC
Q 019100 337 NRMSIGPF 344 (346)
Q Consensus 337 ~~~~~~~~ 344 (346)
++.||+++
T Consensus 309 ~~~~~~~~ 316 (419)
T PRK06687 309 NNLDMFEE 316 (419)
T ss_pred CChhHHHH
Confidence 88998865
No 3
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=100.00 E-value=1.7e-46 Score=349.91 Aligned_cols=309 Identities=27% Similarity=0.449 Sum_probs=263.3
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|++++++.+++++++|+|++|+|++|++..+....+ .+.++||++|++|+|||||+|+|+.+..+||...+
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~--~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d 78 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKY--PEATFIDAKGKLIMPGFINTHNHFYSTFARGMMAD 78 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccC--CCCeEEeCCCCEEecCeeecccchhhhhhcccccc
Confidence 4799999999876655778999999999999999864332111 24578999999999999999999999988887654
Q ss_pred ----CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC------CHHHHHHHHHHhCCeEEEeccc
Q 019100 101 ----VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQST 170 (346)
Q Consensus 101 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~------~~~~~~~~~~~~g~~~~~~~~~ 170 (346)
.++.+|+...+|+....+++++.+...+.++.+++++||||+.|+... ..+...+++.+.|+|.++++..
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~ 158 (441)
T TIGR03314 79 IPPPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYET 158 (441)
T ss_pred CCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeee
Confidence 257889988888988889999999999999999999999999998521 1356678889999999998777
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhH
Q 019100 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (346)
Q Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 250 (346)
++.... ....+.+....++++++....++++.++++|+.+++++++.++++.++|+++++++++|+.|+..+.
T Consensus 159 ~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~ 231 (441)
T TIGR03314 159 SDRDGG-------KEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDV 231 (441)
T ss_pred ecCCCc-------ccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHH
Confidence 653211 1234456666677777776556789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEc
Q 019100 251 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLG 329 (346)
Q Consensus 251 ~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~G 329 (346)
+.+.+.+|+. +++++++.|+++++++++||.+++++|+++|++.|+.+++||.||+++ .|.+|+++++++||+|+||
T Consensus 232 ~~~~~~~g~~--~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~cP~sn~~l~~G~~p~~~~~~~Gv~v~LG 309 (441)
T TIGR03314 232 EDSHHKYGKD--IVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHNPESNMGNAVGYNPVLRMFKNGILLGLG 309 (441)
T ss_pred HHHHHHcCCC--HHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEECHHHHhhhccCCCCHHHHHHCCCEEEEc
Confidence 9999888865 999999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 019100 330 TDGAPSNNRMSIGPF 344 (346)
Q Consensus 330 TD~~~~~~~~~~~~~ 344 (346)
||+.+ .|||++
T Consensus 310 tD~~~----~d~~~e 320 (441)
T TIGR03314 310 TDGYT----SDMFES 320 (441)
T ss_pred CCCCC----cCHHHH
Confidence 99853 377765
No 4
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=100.00 E-value=4.2e-45 Score=341.64 Aligned_cols=309 Identities=27% Similarity=0.457 Sum_probs=261.4
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|+++++...++++++|+|+||+|++|++..+.... .++.++||++|++|+|||||+|+|+.++.++|...+
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~--~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~ 79 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAK--YPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMAN 79 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccc--cCCCeEEeCCCCEEecceeeccccchhhhhcccccc
Confidence 689999999877655577889999999999999975332111 124589999999999999999999999888886522
Q ss_pred ----CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC------CHHHHHHHHHHhCCeEEEeccc
Q 019100 101 ----VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQST 170 (346)
Q Consensus 101 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~------~~~~~~~~~~~~g~~~~~~~~~ 170 (346)
.++.+|+...+|+....+++++.+..++.++.+++++|||+++|+... ..+...+.+.+.|+|.++++..
T Consensus 80 ~~~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~ 159 (442)
T PRK07203 80 IPPPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYET 159 (442)
T ss_pred cCCCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccc
Confidence 467889888888988889999999999999999999999999998521 1245677888999999887665
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhH
Q 019100 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (346)
Q Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 250 (346)
.+.+ ......+.++...++++.+....++++...++|++++.++++.+++++++|+++|+++++|+.|+..+.
T Consensus 160 ~d~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~ 232 (442)
T PRK07203 160 SDRD-------GEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDV 232 (442)
T ss_pred ccCC-------cchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHH
Confidence 5432 011235566777788888876666789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEc
Q 019100 251 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLG 329 (346)
Q Consensus 251 ~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~G 329 (346)
+.+.+.||.. +++++++.|++++++++.||.+++++|++++++.|+.+++||.||.++ .+.+|+++++++||+|++|
T Consensus 233 ~~~~~~~g~~--~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lG 310 (442)
T PRK07203 233 SDSHKKYGKD--IVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVHNPESNMGNAVGYNPVLEMIKNGILLGLG 310 (442)
T ss_pred HHHHHHcCCC--HHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEECchhhhhcccCCCCHHHHHHCCCeEEEc
Confidence 9999988865 999999999999999999999999999999999999999999999988 8899999999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 019100 330 TDGAPSNNRMSIGPF 344 (346)
Q Consensus 330 TD~~~~~~~~~~~~~ 344 (346)
||+.+ .||+++
T Consensus 311 tD~~~----~d~~~~ 321 (442)
T PRK07203 311 TDGYT----SDMFES 321 (442)
T ss_pred CCCCC----ccHHHH
Confidence 99753 376654
No 5
>PRK12393 amidohydrolase; Provisional
Probab=100.00 E-value=2.2e-44 Score=337.27 Aligned_cols=319 Identities=26% Similarity=0.370 Sum_probs=261.9
Q ss_pred cceEEEEcCE-EEecCCCCceeee-eeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccc
Q 019100 18 SSTMILHNAV-IVTMDKESRVFRN-GGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (346)
Q Consensus 18 ~~~~li~n~~-i~~~d~~~~~~~~-~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~ 95 (346)
|.+++|+|++ |++.+++.+++.+ .+|+|+||+|++|++.. +.+++++||++|++|+|||||+|+|+.++.+|
T Consensus 1 ~~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~------~~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~r 74 (457)
T PRK12393 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGALT------PLPGERVIDATDCVVYPGWVNTHHHLFQSLLK 74 (457)
T ss_pred CCcEEEECCeEEEecCCCccccccCceEEEECCEEEEEeccC------CCCCCeEEeCCCCEEecCEeecccCccccccc
Confidence 3468999996 7876654443344 48999999999999831 12357899999999999999999999999999
Q ss_pred ccc--CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc--------CCHHHHHHHHHHhCCeEE
Q 019100 96 GIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--------QHVSEMAKAVELLGLRAC 165 (346)
Q Consensus 96 g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~--------~~~~~~~~~~~~~g~~~~ 165 (346)
|.. .+.++.+|+....|+....+++++.+...++++.+++++||||++|+.. ...+...++..+.|+|.+
T Consensus 75 g~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~ 154 (457)
T PRK12393 75 GVPAGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFV 154 (457)
T ss_pred ccccccCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEE
Confidence 874 3557889998878887778899999999999999999999999999842 123567888999999998
Q ss_pred EecccccCCCCC----CcccccCChHHHHHHHHHHHHHHcCCC-CCCeEEEEeeccc-ccCCHHHHHHHHHHHHHcCCeE
Q 019100 166 LVQSTMDCGEGL----PASWAVRTTDDCIQSQKELYAKHHHAA-DGRIRIWFGIRQI-MNATDRLLLETRDMAREFKTGI 239 (346)
Q Consensus 166 ~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v 239 (346)
+++...+...+. +........++.++....+.+++.... .+++.+.++|+.+ +.++++.+++++++|+++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~ 234 (457)
T PRK12393 155 LCRGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRL 234 (457)
T ss_pred EEccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 876544321111 111112345666677777777775432 3457778888877 8899999999999999999999
Q ss_pred EEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHH
Q 019100 240 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKE 318 (346)
Q Consensus 240 ~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~ 318 (346)
++|+.|+..+.+...+.+|.. +++++++.|+++++++++|+.+++++|++++++.|+.+++||.+|.++ .+.+|+++
T Consensus 235 ~~H~~e~~~~~~~~~~~~g~~--~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg~g~~~~~~ 312 (457)
T PRK12393 235 HSHLSETVDYVDFCREKYGMT--PVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGIAHCPQSNGRLGSGIAPALA 312 (457)
T ss_pred EEEeCCCHHHHHHHHHHhCCC--HHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECchhhhhhcccCCCHHH
Confidence 999999988888887777764 899999999999999999999999999999999999999999999888 78999999
Q ss_pred HHHcCCcEEEcCCCCCCCCCCCCCCC
Q 019100 319 MLHADICVSLGTDGAPSNNRMSIGPF 344 (346)
Q Consensus 319 ~~~~Gv~v~~GTD~~~~~~~~~~~~~ 344 (346)
++++|++|++|||+.+++++.|||++
T Consensus 313 ~~~~Gv~v~lGtD~~~~~~~~d~~~~ 338 (457)
T PRK12393 313 MEAAGVPVSLGVDGAASNESADMLSE 338 (457)
T ss_pred HHHCCCeEEEecCCcccCCCccHHHH
Confidence 99999999999999888888999865
No 6
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=1.2e-43 Score=332.76 Aligned_cols=316 Identities=35% Similarity=0.601 Sum_probs=267.5
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|++++++ ..+++++|+|+||+|++|++..+. ...+++||++|++|+|||||+|+|+.++.++|...
T Consensus 2 ~~~i~~~~vi~~~~~-~~~~~g~V~I~dg~I~~vg~~~~~-----~~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~ 75 (445)
T PRK07228 2 TILIKNAGIVTMNAK-REIVDGDVLIEDDRIAAVGDRLDL-----EDYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIAD 75 (445)
T ss_pred eEEEEccEEEecCCC-cEecccEEEEECCEEEEecCCccc-----CcCCeEEeCCCCEEecCEEecccCCccccceeccC
Confidence 489999999998654 356899999999999999976432 12468999999999999999999999988888777
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-CHHHHHHHHHHhCCeEEEecccccCCCCCC
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEMAKAVELLGLRACLVQSTMDCGEGLP 178 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~ 178 (346)
+.++.+|+...+|+....+++++.+..++..+.+++.+|+||++|++.. ......+.+.+.|+|.+.++.+++.+.. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~~-~ 154 (445)
T PRK07228 76 DLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHHTDSAFEAAGESGIRAVLGKVMMDYGDD-V 154 (445)
T ss_pred CCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccChHHHHHHHHHcCCeEEEecceecCCcC-C
Confidence 7788899988888887888999989999999999999999999998742 3566677888999999888888775421 1
Q ss_pred cccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcC
Q 019100 179 ASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258 (346)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g 258 (346)
+.......++.+++..++++.+....++.+...++|+....++++.+++++++|+++|+++++|+.++..+.+.+.+.+|
T Consensus 155 p~~~~~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g 234 (445)
T PRK07228 155 PEGLQEDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETG 234 (445)
T ss_pred CccccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC
Confidence 22222345667778888888876555567777788888888999999999999999999999999999888888887777
Q ss_pred CCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCCC
Q 019100 259 VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN 337 (346)
Q Consensus 259 ~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~~ 337 (346)
.. .++++++.|+++++++++|++++++++++++++.|+.+++||.+|..+ .+..|++++++.|+++++|||++++++
T Consensus 235 ~~--~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~v~~~P~~~~~~~~~~~p~~~~~~~Gv~v~lGtD~~~~~~ 312 (445)
T PRK07228 235 MR--NIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHCPSSNLKLASGIAPVPDLLERGINVALGADGAPCNN 312 (445)
T ss_pred CC--HHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCeEEEChHHhhhcccccCcHHHHHHCCCeEEEcCCCCccCC
Confidence 65 899999999999999999999999999999999999999999999877 788999999999999999999987777
Q ss_pred CCCCCCC
Q 019100 338 RMSIGPF 344 (346)
Q Consensus 338 ~~~~~~~ 344 (346)
..|+|.+
T Consensus 313 ~~~~~~~ 319 (445)
T PRK07228 313 TLDPFTE 319 (445)
T ss_pred CccHHHH
Confidence 7787754
No 7
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=1.3e-43 Score=331.62 Aligned_cols=314 Identities=29% Similarity=0.493 Sum_probs=263.4
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
.+++|+|+.|++++++.+++++++|+|+||+|++|++..+.... .+++++||++|++|+|||||+|+|+.++.++|..
T Consensus 7 ~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~--~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~ 84 (443)
T PRK09045 7 VDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARAR--YAAAETVELPDHVLIPGLINAHTHAAMSLLRGLA 84 (443)
T ss_pred ccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCccccccc--CCcceEEeCCCCEEecCEeccccChhhHhhhhcc
Confidence 47899999999988666888999999999999999986543211 1246899999999999999999999999888887
Q ss_pred CCCChhHhhhhhccccc-cCCCchHHHHHHHHHHHHHHhcCceEeeecCcCCHHHHHHHHHHhCCeEEEecccccCCCCC
Q 019100 99 DDVDLMTWLHDRIWPYE-SNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGL 177 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~ 177 (346)
.+.++.+|+....|+.. ..+++++.+...+..+.+++++|+||++++. .+.+...+.+.+.|+|.+++..+++..
T Consensus 85 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~G~R~~~~~~~~~~~--- 160 (443)
T PRK09045 85 DDLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMY-FFPEAAAEAAHQAGMRAQIGMPVLDFP--- 160 (443)
T ss_pred CCCCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecc-ccHHHHHHHHHHcCCeEEEecccccCC---
Confidence 77788899987766544 3467888888888999999999999999986 455566777889999998887666532
Q ss_pred CcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhc
Q 019100 178 PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257 (346)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 257 (346)
..+ ....++.++...++.+.+. +.+++++.++++..+.++++.+++++++|+++|+++++|+.++..+.+...+.+
T Consensus 161 -~~~-~~~~~~~l~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~ 236 (443)
T PRK09045 161 -TAW-ASDADEYLAKGLELHDQWR--HHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQH 236 (443)
T ss_pred -Ccc-ccCHHHHHHHHHHHHHHhc--CCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHh
Confidence 111 1234566666667777765 357899999999999999999999999999999999999998887777777767
Q ss_pred CCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 258 g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
|.. +++.+++.|+++++++++|+.++++++++++++.|+.+++||.++.++ .+..|++.++++|+++++|||+++++
T Consensus 237 g~~--~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~i~~~P~~~~~~~~~~~~~~~l~~~Gv~v~lGtD~~~~~ 314 (443)
T PRK09045 237 GQR--PLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHCPESNLKLASGFCPVAKLLQAGVNVALGTDGAASN 314 (443)
T ss_pred CCC--HHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEECHHHHhhhccCCCcHHHHHHCCCeEEEecCCCCCC
Confidence 754 889999999999999999999999999999999999999999998776 67899999999999999999998877
Q ss_pred CCCCCCCC
Q 019100 337 NRMSIGPF 344 (346)
Q Consensus 337 ~~~~~~~~ 344 (346)
++.||+.+
T Consensus 315 ~~~~~~~~ 322 (443)
T PRK09045 315 NDLDLFGE 322 (443)
T ss_pred CCccHHHH
Confidence 78887754
No 8
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=100.00 E-value=1.5e-43 Score=332.24 Aligned_cols=317 Identities=30% Similarity=0.489 Sum_probs=263.1
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc--c
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI--A 98 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~--~ 98 (346)
+++.|+.|++++++..++++++|+|+||+|++|++..+.+ .+++++||++|++|||||||+|+|+.++.+++. .
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~----~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~ 79 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALP----QPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAA 79 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCC----CCCCeEEeCCCCEEecceEeccccccchhccccccc
Confidence 5556679999987667789999999999999999975421 135689999999999999999999999988887 5
Q ss_pred CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-------CHHHHHHHHHHhCCeEEEecccc
Q 019100 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-------HVSEMAKAVELLGLRACLVQSTM 171 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-------~~~~~~~~~~~~g~~~~~~~~~~ 171 (346)
.+.++.+|+.. .++....+++++.+.....++.+++++|+|+++|+... ..+...+.....|+|.+++...+
T Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~ 158 (451)
T PRK08203 80 QDAELFPWLTT-LYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSM 158 (451)
T ss_pred CCCcHHHHHHH-HhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEeccee
Confidence 56678889864 45555678889989999999999999999999997521 14566788899999999876655
Q ss_pred cCCC---CCCcccccCChHHHHHHHHHHHHHHcCCC-CCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCCh
Q 019100 172 DCGE---GLPASWAVRTTDDCIQSQKELYAKHHHAA-DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (346)
Q Consensus 172 ~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 247 (346)
+... ++++.......++.++...++++++.... .+++++++++++++.++++.++++++.|+++|+++++|+.++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~ 238 (451)
T PRK08203 159 SLGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETL 238 (451)
T ss_pred ecCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCH
Confidence 4321 12222223345666777788888775433 3688888999998899999999999999999999999999998
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcE
Q 019100 248 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICV 326 (346)
Q Consensus 248 ~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v 326 (346)
.+.+.+.+.+|+. +++++++.|+++++++++|+++++++++++|++.|+.+++||.++.++ .+..|+++++++|+++
T Consensus 239 ~~~~~~~~~~g~~--~~~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~~~~~l~~~~~~~~~~~~~Gv~v 316 (451)
T PRK08203 239 DEEAFCLERFGMR--PVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHCPCSNMRLASGIAPVRELRAAGVPV 316 (451)
T ss_pred HHHHHHHHHhCCC--HHHHHHHcCCCCCCeEEEEEeCCCHHHHHHHHhcCCeEEECcHHhhhhccCCCCHHHHHHCCCeE
Confidence 8887777777765 899999999999999999999999999999999999999999999887 7889999999999999
Q ss_pred EEcCCCCCCCCCCCCCCC
Q 019100 327 SLGTDGAPSNNRMSIGPF 344 (346)
Q Consensus 327 ~~GTD~~~~~~~~~~~~~ 344 (346)
++|||++++++..||+.+
T Consensus 317 ~lGtD~~~~~~~~~~~~~ 334 (451)
T PRK08203 317 GLGVDGSASNDGSNLIGE 334 (451)
T ss_pred EEecCCCccCCCcCHHHH
Confidence 999999877777888765
No 9
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=2e-43 Score=328.78 Aligned_cols=309 Identities=37% Similarity=0.621 Sum_probs=264.2
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
.+++|+|++|++++++ .+++++|+|++|+|.+|++... ...+++||++|++|+|||||+|+|+.++.++|..
T Consensus 2 ~~~~~~~~~i~~~~~~--~~~~~~v~v~~g~I~~i~~~~~------~~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~ 73 (430)
T PRK06038 2 ADIIIKNAYVLTMDAG--DLKKGSVVIEDGTITEVSESTP------GDADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYA 73 (430)
T ss_pred CCEEEEccEEEECCCC--eeeccEEEEECCEEEEecCCCC------CCCCEEEeCCCCEEecCeeecccCcchhhhhhcc
Confidence 3589999999987642 4577899999999999998632 1245799999999999999999999999999887
Q ss_pred CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCCHHHHHHHHHHhCCeEEEecccccCCCCCC
Q 019100 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLP 178 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~ 178 (346)
.+.++.+|+....++....+++++.+..++..+.+++++|+||++|+. .+.....+...+.|+|..+++..++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-~~~~~~~~a~~~~GiR~~~~~~~~d~~---- 148 (430)
T PRK06038 74 DDLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMY-FYMDEVAKAVEESGLRAALSYGMIDLG---- 148 (430)
T ss_pred CCCCHHHHHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccc-cCHHHHHHHHHHhCCeEEEEchhccCC----
Confidence 777888999877777777788888888889999999999999999987 455667778889999987765443322
Q ss_pred cccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcC
Q 019100 179 ASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258 (346)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g 258 (346)
.....++.++...++++.+....++.+...++++..+.++++.++++++.|+++|+++++|+.++..+...+.+.+|
T Consensus 149 ---~~~~~~~~l~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G 225 (430)
T PRK06038 149 ---DDEKGEAELKEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYG 225 (430)
T ss_pred ---CccchHHHHHHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhC
Confidence 11234566777778888887655678888899999999999999999999999999999999999988888888777
Q ss_pred CCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCCC
Q 019100 259 VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN 337 (346)
Q Consensus 259 ~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~~ 337 (346)
.. ++++++++|+++++++++||+++++++++++++.|+.+++||.+|.++ .+..|+++++++|++|++|||++++++
T Consensus 226 ~~--~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~v~~~P~~n~~~~~~~~p~~~~~~~Gv~v~lGtD~~~~~~ 303 (430)
T PRK06038 226 MC--SVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNPVSNMKLASGIAPVPKLLERGVNVSLGTDGCASNN 303 (430)
T ss_pred CC--HHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCCEEEEChHHhhhhccCCCCHHHHHHCCCeEEEeCCCCccCC
Confidence 65 899999999999999999999999999999999999999999999887 788999999999999999999887778
Q ss_pred CCCCCCCC
Q 019100 338 RMSIGPFY 345 (346)
Q Consensus 338 ~~~~~~~~ 345 (346)
+.||++++
T Consensus 304 ~~d~~~~~ 311 (430)
T PRK06038 304 NLDMFEEM 311 (430)
T ss_pred CcCHHHHH
Confidence 88887653
No 10
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=100.00 E-value=3e-43 Score=327.32 Aligned_cols=312 Identities=24% Similarity=0.325 Sum_probs=258.4
Q ss_pred EEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCCChhHh
Q 019100 27 VIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTW 106 (346)
Q Consensus 27 ~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~ 106 (346)
.+.++|...+++++++|+|+||+|++|++..+..... .+++++||++|++|+|||||+|+|+.++.+||...+.++.+|
T Consensus 13 ~~~~~d~~~~~~~~g~V~v~~g~I~~vG~~~~~~~~~-~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~w 91 (429)
T cd01303 13 ELELVEDALRVVEDGLIVVVDGNIIAAGAAETLKRAA-KPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDW 91 (429)
T ss_pred cccccCCcEEEECCeEEEEECCEEEEeCchhhhhhhc-CCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHH
Confidence 3456777788899999999999999999865432111 124689999999999999999999999999998878889999
Q ss_pred hhhhccccccC-CCchHHHHHHHHHHHHHHhcCceEeeecCcC---CHHHHHHHHHHhCCeEEEecccccCCCCCCcccc
Q 019100 107 LHDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA 182 (346)
Q Consensus 107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 182 (346)
+...+|+.... .++++.+...+.++.+++++||||++++... ..+...+.+...|+|.++++..++... +...
T Consensus 92 l~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~---~~~~ 168 (429)
T cd01303 92 LETYTFPEEAKFADPAYAREVYGRFLDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNA---PEYY 168 (429)
T ss_pred HHhhhhHHHHhcCCHHHHHHHHHHHHHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCC---Cccc
Confidence 98777776654 4667777778888999999999999998643 345667778889999998876654321 1111
Q ss_pred cCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC-CeEEEEecCChhhHHHHHHhcCCCC
Q 019100 183 VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVDH 261 (346)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~g~~~ 261 (346)
....++.++...++++.+... ++++..+++|+..+.++++.+++++++|+++| +++++|+.|+..+.+.+.+.+|...
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~-~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~ 247 (429)
T cd01303 169 RDTAESSYRDTKRLIERWHGK-SGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGAR 247 (429)
T ss_pred ccCHHHHHHHHHHHHHHHhCc-CCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCC
Confidence 223455667777788877654 46788889999999999999999999999999 9999999999988888888777334
Q ss_pred CHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCCCCCC
Q 019100 262 GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMS 340 (346)
Q Consensus 262 ~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~ 340 (346)
+++++++++|+++++++++||.++++++++++++.|+.+++||.+|..+ .+..|+++++++|+++++|||+.++ ++.|
T Consensus 248 ~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~l~~g~~~~~~~~~~Gv~v~lGtD~~~~-~~~d 326 (429)
T cd01303 248 DYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASVAHCPTSNLFLGSGLFDVRKLLDAGIKVGLGTDVGGG-TSFS 326 (429)
T ss_pred CHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCCEEEECccchhhhccCCCCHHHHHHCCCeEEEeccCCCC-CCcc
Confidence 5999999999999999999999999999999999999999999999888 8899999999999999999998754 5678
Q ss_pred CCCC
Q 019100 341 IGPF 344 (346)
Q Consensus 341 ~~~~ 344 (346)
|+++
T Consensus 327 ~~~~ 330 (429)
T cd01303 327 MLDT 330 (429)
T ss_pred HHHH
Confidence 8765
No 11
>PRK06380 metal-dependent hydrolase; Provisional
Probab=100.00 E-value=7.6e-43 Score=324.73 Aligned_cols=304 Identities=33% Similarity=0.515 Sum_probs=255.3
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|++++... .+.+++|+|+||+|++|++..+ ..+++||++|++|+|||||+|+|+.++.+||...
T Consensus 2 ~~li~~~~v~~~~~~~-~~~~~~v~i~~g~I~~ig~~~~-------~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~ 73 (418)
T PRK06380 2 SILIKNAWIVTQNEKR-EILQGNVYIEGNKIVYVGDVNE-------EADYIIDATGKVVMPGLINTHAHVGMTASKGLFD 73 (418)
T ss_pred eEEEEeeEEEECCCCc-eeeeeeEEEECCEEEEecCCCC-------CCCEEEECCCCEEccCEEeeccCCCccccCCccc
Confidence 3799999999876433 4568999999999999998532 2458999999999999999999999999999887
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCCHHHHHHHHHHhCCeEEEecccccCCCCCCc
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 179 (346)
+.++.+|+.. .|+....+++++.+...+.++.+++++||||+.|++ ...+...+++.+.|+|.+++...++... ..
T Consensus 74 ~~~l~~~~~~-~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~-~~~~~~~~a~~~~G~r~~~~~~~~~~~~--~~ 149 (418)
T PRK06380 74 DVDLEEFLMK-TFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLY-YSEDIIAKAAEELGIRAFLSWAVLDEEI--TT 149 (418)
T ss_pred CCCHHHHHHH-HHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccc-cChHHHHHHHHHhCCeEEEecccccCCc--cc
Confidence 7888999986 677777889999999999999999999999999987 3456677888999999988876654321 00
Q ss_pred ccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCC
Q 019100 180 SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259 (346)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~ 259 (346)
.....+....++++++.. .+++...+++++.+.++++.+++++++|+++|+++++|+.|+..+.......+|.
T Consensus 150 -----~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~ 222 (418)
T PRK06380 150 -----QKGDPLNNAENFIREHRN--EELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGE 222 (418)
T ss_pred -----ccchHHHHHHHHHHHhcC--CCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCC
Confidence 011223445556666543 4678888999999999999999999999999999999999987666666666675
Q ss_pred CCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-c-ccccHHHHHHcCCcEEEcCCCCCCCC
Q 019100 260 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-L-GFAPIKEMLHADICVSLGTDGAPSNN 337 (346)
Q Consensus 260 ~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~-~~~~~~~~~~~Gv~v~~GTD~~~~~~ 337 (346)
. ++++++.+|+++++++++|++++++++++++++.|+.+++||.++.++ . +..|+++++++|++|++|||+..+++
T Consensus 223 ~--~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~~g~~p~~~~~~~Gv~v~lGTD~~~~~~ 300 (418)
T PRK06380 223 R--PVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNSVSNFKLGTGGSPPIPEMLDNGINVTIGTDSNGSNN 300 (418)
T ss_pred C--HHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHcCCEEEECHHHHHhhccCCCCcHHHHHHCCCeEEEcCCCCcCCC
Confidence 4 899999999999999999999999999999999999999999999887 4 78999999999999999999987778
Q ss_pred CCCCCCC
Q 019100 338 RMSIGPF 344 (346)
Q Consensus 338 ~~~~~~~ 344 (346)
+.||+++
T Consensus 301 ~~d~~~~ 307 (418)
T PRK06380 301 SLDMFEA 307 (418)
T ss_pred CcCHHHH
Confidence 8888764
No 12
>PRK08418 chlorohydrolase; Provisional
Probab=100.00 E-value=6.7e-43 Score=322.15 Aligned_cols=309 Identities=19% Similarity=0.237 Sum_probs=246.9
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|++++.+..++++++|+|+ |+|++|++..+....+ ...++||++|++|+|||||+|+|+.++.+||...+
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~--~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~ 78 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKY--PNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDY 78 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhC--CCCcEEecCCcEEccCccccccchhhhhhccccCC
Confidence 58999999988755567889999999 9999999865432211 23468999999999999999999999999997767
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCCHHHHHHHHHHhCCeEEEecccccCCCCCCcc
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 180 (346)
.++.+|+...+++.. .++++..+...+.++.+++++||||+.+++.. ....+++.+.|+|.+++...++.. ..
T Consensus 79 ~~~~~wl~~~~~~~~-~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~--~~~~~a~~~~GiR~~~~~~~~~~~----~~ 151 (408)
T PRK08418 79 GDFIPWLGSVINHRE-DLLEKCKGALIQQAINEMLKSGVGTIGAISSF--GIDLEICAKSPLRVVFFNEILGSN----AS 151 (408)
T ss_pred CchHHHHHHHhhhhh-hcCHHHHHHHHHHHHHHHHhcCceEEEEeecc--hhhHHHHHhcCCeEEEEeeeeCCC----cc
Confidence 778899977665553 46677777777889999999999999998732 223577889999998876554322 11
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCC-
Q 019100 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV- 259 (346)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~- 259 (346)
......+..+. ..+.......+++...++|+.+++++++.++++.++|+++|+++++|+.|+..+.+.+.+.+|.
T Consensus 152 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~ 227 (408)
T PRK08418 152 AVDELYQDFLA----RFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWF 227 (408)
T ss_pred chhhhHHHHHH----HHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCch
Confidence 11111111111 1122111234678889999999999999999999999999999999999999998888887773
Q ss_pred -------------CCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCc
Q 019100 260 -------------DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADIC 325 (346)
Q Consensus 260 -------------~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~ 325 (346)
..+++++++.++ +++++++||.+++++|++++++.|+.+++||.||.++ .+.+|+++++++|++
T Consensus 228 ~~~~~~~~~~~~~~~~pv~~l~~~g--~~~~~~~H~~~~~~~di~~la~~g~~v~~cP~sn~~lg~g~~p~~~~~~~Gi~ 305 (408)
T PRK08418 228 KKFFEKFLKEPKPLYTPKEFLELFK--GLRTLFTHCVYASEEELEKIKSKNASITHCPFSNRLLSNKALDLEKAKKAGIN 305 (408)
T ss_pred hhhhhhhcccccccCCHHHHHHHhC--CCCeEEEecccCCHHHHHHHHHcCCcEEECHhHHHHhcCCCccHHHHHhCCCe
Confidence 125889998887 5688999999999999999999999999999999988 889999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCC
Q 019100 326 VSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 326 v~~GTD~~~~~~~~~~~~~~ 345 (346)
|++|||+.++++++||++++
T Consensus 306 v~lGtD~~~~~~~~~~~~em 325 (408)
T PRK08418 306 YSIATDGLSSNISLSLLDEL 325 (408)
T ss_pred EEEeCCCCCCCCCcCHHHHH
Confidence 99999998888999998764
No 13
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=1.7e-42 Score=322.24 Aligned_cols=308 Identities=31% Similarity=0.544 Sum_probs=261.1
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|++++. ....+.+|+|+||+|++|++... .+..++||++|++|+|||||+|+|+.++.++|...
T Consensus 2 ~~~i~~~~i~~~~~--~~~~~~~i~i~~g~I~~v~~~~~------~~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~ 73 (424)
T PRK08393 2 SILIKNGYVIYGEN--LKVIRADVLIEGNKIVEVKRNIN------KPADTVIDASGSVVSPGFINAHTHSPMVLLRGLAD 73 (424)
T ss_pred eEEEECcEEEeCCC--CceecceEEEECCEEEEecCCCC------CCCCeEEeCCCCEEccCeeeeccCcchHhhhhccC
Confidence 48999999998653 34467899999999999987532 12457999999999999999999999999998887
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCCHHHHHHHHHHhCCeEEEecccccCCCCCCc
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 179 (346)
+.++.+|+....|+....+++++.+...+.++.++++.|+||+.|+. ...+...+.....|+|.+++...++.. .+
T Consensus 74 ~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~~~~~~a~~~~G~r~~~~~~~~~~~---~~ 149 (424)
T PRK08393 74 DVPLMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMY-FHMEEVAKATLEVGLRGYLSYGMVDLG---DE 149 (424)
T ss_pred CCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccc-cCHHHHHHHHHHhCCeEEEeceEecCC---Cc
Confidence 88889999888888777788899899999999999999999999987 456777888889999998765544321 11
Q ss_pred ccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCC
Q 019100 180 SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259 (346)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~ 259 (346)
. ...+.++...++++.+.....+.+...++|+..+.++++++++++++|+++|+++++|+.|+..+.+.+.+.+|.
T Consensus 150 ~----~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~ 225 (424)
T PRK08393 150 E----KREKEIKETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGK 225 (424)
T ss_pred c----chHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCc
Confidence 1 123445555556666665556678878899988899999999999999999999999999999988888888876
Q ss_pred CCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCCCC
Q 019100 260 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNR 338 (346)
Q Consensus 260 ~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~~~ 338 (346)
. +++++.++|+++++++++|+.++++++++++++.|+.+++||.+|.++ .+..|+++++++|+++++|||+.+++++
T Consensus 226 ~--~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~P~sn~~lg~g~~~~~~~~~~Gv~v~lGtD~~~~~~~ 303 (424)
T PRK08393 226 S--PVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHNPASNMKLGSGVMPLRKLLNAGVNVALGTDGAASNNN 303 (424)
T ss_pred C--HHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEECHHHHHhhccCCCCHHHHHHCCCcEEEecCCCccCCc
Confidence 4 899999999999999999999999999999999999999999999888 7899999999999999999999887788
Q ss_pred CCCCCCC
Q 019100 339 MSIGPFY 345 (346)
Q Consensus 339 ~~~~~~~ 345 (346)
.||++++
T Consensus 304 ~d~~~~~ 310 (424)
T PRK08393 304 LDMLREM 310 (424)
T ss_pred hhHHHHH
Confidence 8887653
No 14
>PRK09228 guanine deaminase; Provisional
Probab=100.00 E-value=1.1e-42 Score=323.36 Aligned_cols=317 Identities=23% Similarity=0.286 Sum_probs=257.3
Q ss_pred eEEEEcCEEE-ecC-------CCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 20 TMILHNAVIV-TMD-------KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 20 ~~li~n~~i~-~~d-------~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
++++++.-+. +.. .+.+++++++|+|+||+|++|++..+....++ ..+++||++|++|+|||||+|+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~I~~g~I~~Vg~~~~~~~~~~-~~~~viD~~g~lv~PGlVn~H~H~~~ 81 (433)
T PRK09228 3 TKAYRGRLLHFTADPAEVDDEDALRYIEDGLLLVEDGRIVAAGPYAELRAQLP-ADAEVTDYRGKLILPGFIDTHIHYPQ 81 (433)
T ss_pred eEEEEEEEEccCCCccccCCCCcEEEECCeEEEEECCEEEEEcChHHhhhhcC-CCCeEEeCCCCEEecceecccccccc
Confidence 4666665555 222 34677899999999999999998755432222 13589999999999999999999998
Q ss_pred cccccccCCCChhHhhhhhccccccC-CCchHHHHHHHHHHHHHHhcCceEeeecCcC---CHHHHHHHHHHhCCeEEEe
Q 019100 92 QLAKGIADDVDLMTWLHDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELLGLRACLV 167 (346)
Q Consensus 92 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~---~~~~~~~~~~~~g~~~~~~ 167 (346)
+.++|.. +.++.+|+....|+.... .++++.+..++.++.+++++||||+.++... ..+...+...+.|+|.+++
T Consensus 82 ~~~~g~~-~~~l~~wl~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~ 160 (433)
T PRK09228 82 TDMIASY-GEQLLDWLNTYTFPEERRFADPAYAREVAEFFLDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAG 160 (433)
T ss_pred hhhccCC-chHHHHHHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEee
Confidence 8887743 345778998777776553 4667777788888999999999999997533 2356677788899999988
Q ss_pred cccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc-CCeEEEEecCC
Q 019100 168 QSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIHMHVAEI 246 (346)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~ 246 (346)
+..++.+ .+.......++.++...++++++.. .+++.+.++|+..++++++.++++.++|+++ ++++++|+.|+
T Consensus 161 ~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~ 235 (433)
T PRK09228 161 KVLMDRN---APDGLRDTAESGYDDSKALIERWHG--KGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSEN 235 (433)
T ss_pred eeeecCC---CCcccccCHHHHHHHHHHHHHHHhC--CCCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecCC
Confidence 7766542 1112222345666677788888754 3578888999999999999999999999998 99999999999
Q ss_pred hhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCc
Q 019100 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADIC 325 (346)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~ 325 (346)
..+.+.+.+.+|...+++++++++|+++++++++|+.++++++++++++.|+.+++||.+|.++ .+..|+++++++|++
T Consensus 236 ~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~g~~~~~~~~~~Gv~ 315 (433)
T PRK09228 236 LDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIAFCPTSNLFLGSGLFDLKRADAAGVR 315 (433)
T ss_pred hhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCeEEECCccHHhhcCCCcCHHHHHHCCCe
Confidence 9999988888887656799999999999999999999999999999999999999999999888 789999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCC
Q 019100 326 VSLGTDGAPSNNRMSIGPF 344 (346)
Q Consensus 326 v~~GTD~~~~~~~~~~~~~ 344 (346)
+++|||+.+ ++++||+++
T Consensus 316 v~lGtD~~~-~~~~d~~~~ 333 (433)
T PRK09228 316 VGLGTDVGG-GTSFSMLQT 333 (433)
T ss_pred EEEecCCCC-CCCCCHHHH
Confidence 999999874 567788764
No 15
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=100.00 E-value=4.4e-42 Score=318.97 Aligned_cols=312 Identities=31% Similarity=0.520 Sum_probs=268.5
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
.++|+|..++..|++.. ++.+++.|++|+|+.|++..+.. ++.++||++|++|+|||||+|+|+.++.++|...
T Consensus 3 ~~~i~~~~~~~~d~~~~-~~~~~~~i~~g~I~~ig~~~~~~-----~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~ 76 (421)
T COG0402 3 MLLIRGDLLLTNDPEGR-IEDGDLVIEDGKIVAIGANAEGP-----PDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLAD 76 (421)
T ss_pred ceeeeCcEEeecCcccc-eeeeeEEEcCCEEEEeCCcCCCC-----CCceeecCCCCEeccCccccccchHHHHHhhhhc
Confidence 47889999998765544 56789999999999999986531 3568999999999999999999999999999988
Q ss_pred CCChhHhhhhhccccccC-CCchHHHHHHHHHHHHHHhcCceEeeecCcCC---HHHHHHHHHHhCCeEEEecccccCCC
Q 019100 100 DVDLMTWLHDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCGE 175 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~g~ 175 (346)
+.++..|+...+|+.... +++++.+......+.+++++|+|++..+.... .....+.+.+.|+|...++.+++.+
T Consensus 77 ~~~l~~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~- 155 (421)
T COG0402 77 DLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVA- 155 (421)
T ss_pred ccchHHHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCC-
Confidence 777889999988888876 67888899999999999999999977765322 2346778899999999998888754
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHH
Q 019100 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (346)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 255 (346)
++...... .+. +++..++++.+...+ ++..+++|++..+++++.++.+.++++++|+++++|+.|+..+.+.+.+
T Consensus 156 -~p~~~~~~-~~~-~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~ 230 (421)
T COG0402 156 -FPDPGAET-DEE-LEETEELLREAHGLG--RDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLE 230 (421)
T ss_pred -CCcccccc-hHH-HHHHHHHHHHHhcCC--CeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHh
Confidence 22222211 111 566778888887754 7788899999999999999999999999999999999999999999988
Q ss_pred hcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCC
Q 019100 256 TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 256 ~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
.+|+. ++++++..|+++.++++.|+.+++++++.++++.|+.+++||.||+++ ++..|++++++.|+++++|||+..
T Consensus 231 ~~g~~--~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~cP~sN~~L~sG~~p~~~~~~~gv~v~~gTD~~~ 308 (421)
T COG0402 231 PYGAR--PVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVHCPRSNLKLGSGIAPVRRLLERGVNVALGTDGAA 308 (421)
T ss_pred hcCCC--HHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEECcchhccccCCCCCHHHHHHcCCCEEEecCCcc
Confidence 77765 999999999999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred CCCCCCCCCCC
Q 019100 335 SNNRMSIGPFY 345 (346)
Q Consensus 335 ~~~~~~~~~~~ 345 (346)
+|+.+|||+++
T Consensus 309 ~~~~~d~l~~~ 319 (421)
T COG0402 309 SNNVLDMLREM 319 (421)
T ss_pred ccChHHHHHHH
Confidence 99989999864
No 16
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=100.00 E-value=1.3e-40 Score=308.22 Aligned_cols=300 Identities=22% Similarity=0.328 Sum_probs=244.1
Q ss_pred eeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCCChhHhhhhhcccccc
Q 019100 37 VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYES 116 (346)
Q Consensus 37 ~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 116 (346)
++++++|+|+||+|++|++..+....++ .++++||++|++|+|||||+|+|+.++.++| ..+.++.+|+....|+...
T Consensus 3 ~~~~~~V~V~~g~I~~Vg~~~~~~~~~~-~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g-~~~~~~~~~~~~~~~~~~~ 80 (401)
T TIGR02967 3 YFEDGLLVVENGRIVAVGDYAELKETLP-AGVEIDDYRGHLIMPGFIDTHIHYPQTEMIA-SYGEQLLEWLEKYTFPTEA 80 (401)
T ss_pred EEeceEEEEECCEEEEecCcchhhhccC-CCCeEEeCCCCEEecceeecccCchhhhhcc-cCCchHHHHHhhCcCcccc
Confidence 4578899999999999998654322222 2468999999999999999999999888887 4456677888776666554
Q ss_pred C-CCchHHHHHHHHHHHHHHhcCceEeeecCcCCH---HHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHH
Q 019100 117 N-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQS 192 (346)
Q Consensus 117 ~-~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 192 (346)
. .++++.+......+.+++++|+||+++++..+. +...+.+...|+|..++...++.+ .+.. ......+.++.
T Consensus 81 ~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~--~~~~-~~~~~~~~~~~ 157 (401)
T TIGR02967 81 RFADPDHAEEVAEFFLDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRN--APDY-LRDTAESSYDE 157 (401)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCC--CCcc-cccCHHHHHHH
Confidence 4 467777777888889999999999999874432 456778889999998877665522 1211 12234555667
Q ss_pred HHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc-CCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcC
Q 019100 193 QKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIE 271 (346)
Q Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g 271 (346)
..++++++.. .++++++++++..+.++++.+++++++|+++ |+++++|+.|+..+.+.+.+.++....++++++++|
T Consensus 158 ~~~~i~~~~~--~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g 235 (401)
T TIGR02967 158 SKALIERWHG--KGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYG 235 (401)
T ss_pred HHHHHHHHhC--cCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCC
Confidence 7777777655 3678888999998999999999999999999 999999999999888888888887655799999999
Q ss_pred CCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCCCCCCCCCC
Q 019100 272 FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIGPF 344 (346)
Q Consensus 272 ~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~ 344 (346)
+++++++++|+.++++++++++++.|+.+++||.++.++ .+..|++.++++|+++++|||+.+ +++.||+++
T Consensus 236 ~lg~~~~~~H~~~~~~~~~~~l~~~g~~v~~~P~~~~~~~~g~~~~~~~~~~Gv~v~lGtD~~~-~~~~~~~~~ 308 (401)
T TIGR02967 236 LLGRRSVFAHCIHLSDEECQRLAETGAAIAHCPTSNLFLGSGLFNLKKALEHGVRVGLGTDVGG-GTSFSMLQT 308 (401)
T ss_pred CCCCCeEEEecccCCHHHHHHHHHcCCeEEEChHHHHHhccCCCCHHHHHHCCCeEEEecCCCC-CCCcCHHHH
Confidence 999999999999999999999999999999999999888 789999999999999999999874 456677754
No 17
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=100.00 E-value=5.1e-41 Score=306.72 Aligned_cols=285 Identities=20% Similarity=0.243 Sum_probs=233.0
Q ss_pred CEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHHH
Q 019100 48 DRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIST 127 (346)
Q Consensus 48 g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (346)
|+|++||+..+....++ ..+++|++|++|+|||||+|+|+.++.+||...+.++.+|+...+ +....+++++.+...
T Consensus 1 ~~I~aVG~~~~~~~~~~--~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~-~~~~~~~~e~~~~~a 77 (381)
T cd01312 1 DKILEVGDYEKLEKRYP--GAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVI-NSRDELLKQPWEEAI 77 (381)
T ss_pred CeEEEECChHHHHhhcC--CCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHH-HHHHhcChHHHHHHH
Confidence 68999998665433222 468999999999999999999999999999777778889997644 445567888889999
Q ss_pred HHHHHHHHhcCceEeeecCcCCHHHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCC
Q 019100 128 LLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGR 207 (346)
Q Consensus 128 ~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (346)
+.++.+++++||||+.|++. ..+ ..+++.+.|+|.++++..++..+ ..+ .+...+..+.++.+....+++
T Consensus 78 ~~~~~E~l~~G~Tt~~d~~~-~~~-~~~a~~~~GiR~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~ 147 (381)
T cd01312 78 RQGIRQMLESGTTSIGAISS-DGS-LLPALASSGLRGVFFNEVIGSNP---SAI-----DFKGETFLERFKRSKSFESQL 147 (381)
T ss_pred HHHHHHHHHhCCeEEEEecC-CHH-HHHHHHHcCCcEEEEEeeECCCC---chh-----hhhHHHHHHHHHHhhccCccc
Confidence 99999999999999999873 333 77788899999999887765331 111 111122222223322224578
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCC----------------CCCHHHHHHHcC
Q 019100 208 IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV----------------DHGTVTFLDKIE 271 (346)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~----------------~~~~~~~l~~~g 271 (346)
+..+++|+.+..++++.++.+.++|+++++++++|+.|+..+.+.+.+.+|. +.++++++++.|
T Consensus 148 v~~~~~p~a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g 227 (381)
T cd01312 148 FIPAISPHAPYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLG 227 (381)
T ss_pred eEEEECCCCCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcC
Confidence 9999999999999999999999999999999999999999888877655320 345899999999
Q ss_pred CCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 272 FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 272 ~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
+++++++++||+++++++++++++.|+.+++||.+|.++ .+..|+++++++|++|++|||+.+++++.||++++
T Consensus 228 ~L~~~~~~~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~lg~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~ 302 (381)
T cd01312 228 GLGTRVSFVHCVYANLEEAEILASRGASIALCPRSNRLLNGGKLDVSELKKAGIPVSLGTDGLSSNISLSLLDEL 302 (381)
T ss_pred CCCCCcEEEECCcCCHHHHHHHHHcCCeEEECcchhhhhcCCCcCHHHHHHCCCcEEEeCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999888 78999999999999999999998888888988764
No 18
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=100.00 E-value=3.4e-40 Score=307.29 Aligned_cols=313 Identities=39% Similarity=0.633 Sum_probs=253.0
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|+++++ .+.+++++|+|+||||++|++..+.+. ...+++||++|++|+|||||+|+|+.++.+++...+
T Consensus 1 ~~i~~~~v~~~~~-~~~~~~~~v~i~~g~I~~ig~~~~~~~---~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~ 76 (411)
T cd01298 1 ILIRNGTIVTTDP-RRVLEDGDVLVEDGRIVAVGPALPLPA---YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADD 76 (411)
T ss_pred CeEEeeEEEEeCC-cceeecceEEEECCEEEEecCcccccc---CCcCeEEeCCCCEEccCccccccchhhHHhhcccCC
Confidence 4799999998764 467789999999999999998654210 135689999999999999999999998877776666
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCCHHHHHHHHHHhCCeEEEecccccCCCCCCcc
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 180 (346)
.++.+|+....++.....++++.+...+.++.+++.+|+|+++++.....+...+.....|+|.......++.....
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~--- 153 (411)
T cd01298 77 LPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYPDAVAEAAEELGIRAVLGRGIMDLGTED--- 153 (411)
T ss_pred CCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccchHHHHHHHHHhCCeEEEEcceecCCCcc---
Confidence 67888988777666666777888888888889999999999999874332455666777888987766555432111
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCC
Q 019100 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260 (346)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~ 260 (346)
.......+++..++++.+...+.+.+++++++++...++++++.++++.|+++|+++++|+.++....+.+...+|..
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~ 231 (411)
T cd01298 154 --VEETEEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKR 231 (411)
T ss_pred --cccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCC
Confidence 112344556666777776665567788888888877889999999999999999999999999887777776666654
Q ss_pred CCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCCCCC
Q 019100 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRM 339 (346)
Q Consensus 261 ~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~~~~ 339 (346)
.++++.+.+.++.++.++|++++++++++++++.|+.+++||.++..+ .+..|+++++++|+++++|||++++++..
T Consensus 232 --~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~~~p~~~~~~~~~~~~~~~~~~~Gv~~~~GsD~~~~~~~~ 309 (411)
T cd01298 232 --PVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHNPASNMKLASGIAPVPEMLEAGVNVGLGTDGAASNNNL 309 (411)
T ss_pred --HHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEChHHhhhhhhCCCCHHHHHHCCCcEEEeCCCCccCCCc
Confidence 788888899999999999999999999999999999999999998776 67889999999999999999998776677
Q ss_pred CCCCC
Q 019100 340 SIGPF 344 (346)
Q Consensus 340 ~~~~~ 344 (346)
|++.+
T Consensus 310 ~~~~~ 314 (411)
T cd01298 310 DMFEE 314 (411)
T ss_pred CHHHH
Confidence 77654
No 19
>PRK08204 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=311.20 Aligned_cols=307 Identities=22% Similarity=0.324 Sum_probs=247.2
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
|.+++|+|++|++.+++.+++++++|+|++|+|++|++..+. ++.++||++|++|+|||||+|+|+.++.+++.
T Consensus 1 ~~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~------~~~~viD~~g~~v~PGlId~H~H~~~~~~~~~ 74 (449)
T PRK08204 1 MKRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEA------PDAEVVDARGMIVMPGLVDTHRHTWQSVLRGI 74 (449)
T ss_pred CCcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCC------CCCeEEeCCCCEEecCEEeeeeccchhhhccc
Confidence 346899999999987765677899999999999999986431 24579999999999999999999998888887
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc-----CCHHHHHHHHHHhCCeEEEeccccc
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHVSEMAKAVELLGLRACLVQSTMD 172 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~ 172 (346)
..+.++.+|+....++....+++++.+...+..+.+++++||||+++++. .......+.+...|+|..++....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~r~~~~~~~~~ 154 (449)
T PRK08204 75 GADWTLQTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPG 154 (449)
T ss_pred cCCCcHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCCeEEEEccccC
Confidence 77777888887766777778888888888888899999999999999752 2234556777889999887765544
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHH
Q 019100 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (346)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 252 (346)
.++ .+......+.+.....+++++....++.+...+.+++...++++.+.++++.|+++|+++++|+.|+...
T Consensus 155 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~--- 227 (449)
T PRK08204 155 PSP----YWPFDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQGFGPWG--- 227 (449)
T ss_pred CCC----CCCcchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcc---
Confidence 332 1211123344555666667676655566777777777778889999999999999999999999876532
Q ss_pred HHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCC
Q 019100 253 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTD 331 (346)
Q Consensus 253 ~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD 331 (346)
.....++.+.+.|+++++++++|+++++++++++|++.|+.+++||.++.++ .+..|+++++++|++|++|||
T Consensus 228 ------~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g~~v~~~P~~~~~~g~~~~~~~~~~~~Gv~v~lGtD 301 (449)
T PRK08204 228 ------ATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPEIEMMMGHGYPVTGRLLAHGVRPSLGVD 301 (449)
T ss_pred ------cCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcCCCEEEChHHHhhhcCCCCcHHHHHhcCCceeeccc
Confidence 1123778888999999999999999999999999999999999999998777 678999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 019100 332 GAPSNNRMSIGPF 344 (346)
Q Consensus 332 ~~~~~~~~~~~~~ 344 (346)
+++ +++.|||++
T Consensus 302 ~~~-~~~~~~~~~ 313 (449)
T PRK08204 302 VVT-STGGDMFTQ 313 (449)
T ss_pred cCC-CCCcCHHHH
Confidence 764 556777653
No 20
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=7e-40 Score=309.29 Aligned_cols=305 Identities=23% Similarity=0.343 Sum_probs=241.7
Q ss_pred eEEEEcCEEEecCCCC-ceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 20 TMILHNAVIVTMDKES-RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~-~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
.++|+|+.|++.++.. .++++++|+|+||+|++|++... ...+++||++|++|+|||||+|+|+..+.+++..
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~------~~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~ 75 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFD------GEVDRVIDAGNALVGPGFIDLDALSDLDTTILGL 75 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCC------CCCCeEEeCCCCEEecCEEeeecccchhhhhccc
Confidence 4799999999887643 57889999999999999998532 1235799999999999999999998754333222
Q ss_pred CCCChhHhhhhhcccc-------ccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC----------CHHHHHHHHHHhC
Q 019100 99 DDVDLMTWLHDRIWPY-------ESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----------HVSEMAKAVELLG 161 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~----------~~~~~~~~~~~~g 161 (346)
.+ ...|+...+|+. ...+++++.+..++.++.+++++|+||++|+... ..+...+.....|
T Consensus 76 ~~--~~~~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~G 153 (488)
T PRK06151 76 DN--GPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLG 153 (488)
T ss_pred cc--chhHHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcC
Confidence 22 225655545543 1357889999999999999999999999986421 1345567778899
Q ss_pred CeEEEecccccCCCCC------CcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc
Q 019100 162 LRACLVQSTMDCGEGL------PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235 (346)
Q Consensus 162 ~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 235 (346)
+|.++++..++.+... .+.+......+.+.+..++++++...+.+.++..++++..+.+++++|+++++.|+++
T Consensus 154 iR~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~ 233 (488)
T PRK06151 154 LRVYLGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAAREL 233 (488)
T ss_pred CeEEecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHHHHHHHHC
Confidence 9998887554322111 1111111234455677778888877667789988999888899999999999999999
Q ss_pred CCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh---------hhHHHHHhcCCeEEEChhh
Q 019100 236 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH---------TEIGLLSRAGVKVSHCPAS 306 (346)
Q Consensus 236 g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~---------~~i~~l~~~g~~v~~~p~~ 306 (346)
|+++++|+.++..+.+.+.+.+|.. +++++++.|+++++++++|++++++ ++++++++.|+.+++||.+
T Consensus 234 g~~v~~H~~e~~~~~~~~~~~~g~~--~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~v~~~P~~ 311 (488)
T PRK06151 234 GCPVRLHCAQGVLEVETVRRLHGTT--PLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAEHGVSIVHCPLV 311 (488)
T ss_pred CCcEEEEECCchHHHHHHHHHcCCC--HHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHhcCCEEEECchh
Confidence 9999999998888888887777764 8999999999999999999999999 9999999999999999999
Q ss_pred hccc-cccccHHHHHHcCCcEEEcCCCCC
Q 019100 307 AMRM-LGFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 307 ~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
+.++ .+..|+++++++|+++++|||+.+
T Consensus 312 ~~~~g~~~~p~~~l~~~Gv~v~lGtD~~~ 340 (488)
T PRK06151 312 SARHGSALNSFDRYREAGINLALGTDTFP 340 (488)
T ss_pred hhhhccccccHHHHHHCCCcEEEECCCCC
Confidence 8877 788999999999999999999743
No 21
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=100.00 E-value=3.6e-40 Score=305.65 Aligned_cols=291 Identities=20% Similarity=0.262 Sum_probs=232.7
Q ss_pred ceeeeeeE-EEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC-----CCChhHhhhh
Q 019100 36 RVFRNGGV-FVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD-----DVDLMTWLHD 109 (346)
Q Consensus 36 ~~~~~~~v-~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~-----~~~~~~~~~~ 109 (346)
++.++++| +|+||+|++|++... .++||++|++|+|||||+|+|+.++.+||... +.++.+|+.
T Consensus 6 ~~~~~~~i~~v~~g~I~~Vg~~~~---------~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~- 75 (418)
T cd01313 6 GWERNVRIEVDADGRIAAVNPDTA---------TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRE- 75 (418)
T ss_pred ceecCeEEEEeCCCeEEEecCCCC---------CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHH-
Confidence 46688999 999999999998532 24699999999999999999999999999764 356678874
Q ss_pred hccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc--------------CCHHHHHHHHHHhCCeEEEecccccCCC
Q 019100 110 RIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--------------QHVSEMAKAVELLGLRACLVQSTMDCGE 175 (346)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 175 (346)
..++....+++++.+..++.++.+++++||||++|+.. ...+...+++.+.|+|.++++..++...
T Consensus 76 ~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~ 155 (418)
T cd01313 76 LMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAG 155 (418)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccC
Confidence 45666677899999999999999999999999998742 1135567888899999988776654321
Q ss_pred CCCcc-c-----ccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhh
Q 019100 176 GLPAS-W-----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (346)
Q Consensus 176 ~~~~~-~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 249 (346)
..... . .....++.++...++++.+. ..+++..+++|+....++++.+++++++|++ |+++++|+.|+..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e 232 (418)
T cd01313 156 FGGPAPNPGQRRFINGYEDFLGLLEKALRAVK--EHAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIHLAEQPKE 232 (418)
T ss_pred CCCCCCchhhhhhcccHHHHHHHHHHHhhhhc--cCCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHH
Confidence 10110 0 00112223333333333332 2467888899999889999999999999999 99999999998888
Q ss_pred HHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEE
Q 019100 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSL 328 (346)
Q Consensus 250 ~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~ 328 (346)
.+.+.+.+|.. +++++.+.|+++++++++||++++++++++|++.|+.+++||.+|.++ .+.+|+++|+++|++|++
T Consensus 233 ~~~~~~~~g~~--~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~g~~p~~~l~~~Gv~v~l 310 (418)
T cd01313 233 VDDCLAAHGRR--PVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCPTTEANLGDGIFPAAALLAAGGRIGI 310 (418)
T ss_pred HHHHHHHcCCC--HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECCCchhhccCCCCCHHHHHHCCCcEEE
Confidence 88888777765 899999999999999999999999999999999999999999999888 889999999999999999
Q ss_pred cCCCCCCCCCCCCCCC
Q 019100 329 GTDGAPSNNRMSIGPF 344 (346)
Q Consensus 329 GTD~~~~~~~~~~~~~ 344 (346)
|||+.. +.||+++
T Consensus 311 GtD~~~---~~d~~~~ 323 (418)
T cd01313 311 GSDSNA---RIDLLEE 323 (418)
T ss_pred ecCCCC---CcCHHHH
Confidence 999643 4566654
No 22
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=100.00 E-value=1.5e-39 Score=304.31 Aligned_cols=302 Identities=19% Similarity=0.216 Sum_probs=236.5
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEe-CCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVV-QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~-~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+.++|+++- + .+.++.+|+|+ ||+|++|++.... .+.+ +..|++|+|||||+|+|+.++.+||...
T Consensus 4 ~~~~~~~~~--~---~~~~~~~i~I~~~g~I~~vg~~~~~-----~~~~---~~~g~lvlPGfVn~H~H~~~~~~rg~~~ 70 (455)
T TIGR02022 4 YWAERALLP--D---GWAEGVRIAVAADGRILAIETGVPA-----APGA---ERLSGPLLPGLANLHSHAFQRAMAGLAE 70 (455)
T ss_pred hhHHhccCC--C---ccccCceEEEecCCEEEEecCCCCc-----cccc---ccCCCEEccCCcccCcchhhHhhcCCcc
Confidence 456777663 2 25577899999 9999999986431 1122 2458899999999999999999999754
Q ss_pred -----CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC--------------CHHHHHHHHHHh
Q 019100 100 -----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVELL 160 (346)
Q Consensus 100 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~--------------~~~~~~~~~~~~ 160 (346)
+.++.+|+. .+|+....+++++.+..++.++.+++++||||+.++... ..+..++++++.
T Consensus 71 ~~~~~~~~l~~w~~-~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~ 149 (455)
T TIGR02022 71 VAGSGGDSFWTWRE-LMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADA 149 (455)
T ss_pred cccCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHh
Confidence 236778875 456777788999999999999999999999999996411 135677888999
Q ss_pred CCeEEEecccccCCC--CCCccc----ccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHH
Q 019100 161 GLRACLVQSTMDCGE--GLPASW----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 234 (346)
Q Consensus 161 g~~~~~~~~~~~~g~--~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 234 (346)
|+|..+.+..++... +.++.. .....+..++....+.+.+.. .+++..+++|+..+.++++.++++++ +++
T Consensus 150 G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~s~e~l~~~~~-a~~ 226 (455)
T TIGR02022 150 GIGLTLLPVFYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAA--QPAAVLGLAPHSLRAVTPEQLAAVLQ-ASD 226 (455)
T ss_pred CCeEEeeeeeeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhcc--CCceEEEEecCCCCcCCHHHHHHHHH-HHh
Confidence 999988766554221 112110 111223333333444443332 35678888999989999999999999 889
Q ss_pred cCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-ccc
Q 019100 235 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGF 313 (346)
Q Consensus 235 ~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~ 313 (346)
+|+++++|+.|+..+.+.+.+.+|.. +++++++.|+++++++++||.+++++|++++++.|+.+++||.+|.++ .+.
T Consensus 227 ~g~~v~~H~~e~~~e~~~~~~~~G~~--~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg~g~ 304 (455)
T TIGR02022 227 RQAPVHIHVAEQQKEVDDCLAWSGRR--PVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVAGLCPTTEANLGDGI 304 (455)
T ss_pred CCCceEEEECCChHHHHHHHHHhCCC--HHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeEEEChhhhccccCCC
Confidence 99999999999998888888888865 999999999999999999999999999999999999999999999888 889
Q ss_pred ccHHHHHHcCCcEEEcCCCCCCCCCCCCCCC
Q 019100 314 APIKEMLHADICVSLGTDGAPSNNRMSIGPF 344 (346)
Q Consensus 314 ~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~ 344 (346)
+|+++|+++|++|++|||+. +++||+++
T Consensus 305 ~pi~~l~~~Gv~v~lGTD~~---~~~d~~~~ 332 (455)
T TIGR02022 305 FPAVDFVAAGGRFGIGSDSH---VVIDVAEE 332 (455)
T ss_pred CCHHHHHHCCCeEEEECCCC---CCCCHHHH
Confidence 99999999999999999963 35677654
No 23
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=100.00 E-value=1.2e-39 Score=305.55 Aligned_cols=304 Identities=18% Similarity=0.221 Sum_probs=239.8
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeC-CEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQ-DRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~-g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g 96 (346)
|.+++++++.+. ++ ++++.+|+|+| |||++|++... .+ .++.+|++|+|||||+|+|+.++.+||
T Consensus 2 ~~~~~~~~~~~~--~~---~~~~~~v~i~~~grI~~vg~~~~------~~---~~~~~g~~vlPGlVn~H~H~~~~~~rg 67 (456)
T PRK09229 2 MTTLFAERALLP--DG---WARNVRLTVDADGRIAAVEPGAA------PA---GAERLAGPVLPGMPNLHSHAFQRAMAG 67 (456)
T ss_pred chhHHHHHhhCC--Cc---cccCcEEEEecCCeEEEecCCCC------Cc---cccccCcEEccCcccccccHhhHhhcC
Confidence 445666776663 32 56888999999 99999998542 11 234589999999999999999999999
Q ss_pred ccCC-----CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC--------------CHHHHHHHH
Q 019100 97 IADD-----VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAV 157 (346)
Q Consensus 97 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~--------------~~~~~~~~~ 157 (346)
...+ .++.+|+. .+|+....+++++.+..++.++.+++++|+||+.+++.. ..+...+..
T Consensus 68 ~~~~~~~~~~~l~~w~~-~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~ 146 (456)
T PRK09229 68 LTEVRGPPQDSFWSWRE-LMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAA 146 (456)
T ss_pred cccccCCCCCChHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHH
Confidence 7653 45667874 456766778999999999999999999999999987421 135677888
Q ss_pred HHhCCeEEEecccccCCC--CCCcc----cccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHH
Q 019100 158 ELLGLRACLVQSTMDCGE--GLPAS----WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDM 231 (346)
Q Consensus 158 ~~~g~~~~~~~~~~~~g~--~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (346)
++.|+|..+++..++... +.++. ......+..++...++.+.+.. .+++.++++|++.+.++++.+++++++
T Consensus 147 ~e~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~s~e~l~~~~~~ 224 (456)
T PRK09229 147 RAAGIGLTLLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAA--LPGARLGLAPHSLRAVTPDQLAAVLAL 224 (456)
T ss_pred HHcCCEEEeceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcC--CCceEEEEeCCCCCCCCHHHHHHHHHH
Confidence 999999988776664321 11211 0112233333334444444432 468888899999999999999999999
Q ss_pred HHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-
Q 019100 232 AREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM- 310 (346)
Q Consensus 232 a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l- 310 (346)
| ++|+++++|+.|+..+...+.+.+|.. +++++++.|+++++++++||++++++|++++++.|+.+++||.+|.++
T Consensus 225 A-~~g~~i~~H~~e~~~e~~~~~~~~g~~--~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg 301 (456)
T PRK09229 225 A-APDGPVHIHIAEQTKEVDDCLAWSGAR--PVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVAGLCPTTEANLG 301 (456)
T ss_pred h-cCCCceEEEeCCCHHHHHHHHHHcCCC--HHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeEEECchhhhhhc
Confidence 9 999999999999888888888878765 899999999999999999999999999999999999999999999888
Q ss_pred cccccHHHHHHcCCcEEEcCCCCCCCCCCCCCCC
Q 019100 311 LGFAPIKEMLHADICVSLGTDGAPSNNRMSIGPF 344 (346)
Q Consensus 311 ~~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~ 344 (346)
.+..|+++++++|++|++|||+.. +.||+++
T Consensus 302 ~g~~p~~~l~~~Gv~v~lGtD~~~---~~d~~~~ 332 (456)
T PRK09229 302 DGIFPAVDYLAAGGRFGIGSDSHV---SIDLVEE 332 (456)
T ss_pred CCCCCHHHHHHCCCeEEEecCCCC---CCCHHHH
Confidence 889999999999999999999643 4566543
No 24
>PRK07213 chlorohydrolase; Provisional
Probab=100.00 E-value=1.6e-36 Score=277.68 Aligned_cols=289 Identities=17% Similarity=0.250 Sum_probs=221.8
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|++.+. ...++++|+|++|+|.+|++.. +..++||++|++| |||||+|+|+..+.+|+...+
T Consensus 2 ~li~~~~v~~~~~--~~~~~~~v~i~~g~I~~i~~~~--------~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~ 70 (375)
T PRK07213 2 LVYLNGNFLYGED--FEPKKGNLVIEDGIIKGFTNEV--------HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIG 70 (375)
T ss_pred EEEEeeEEEeCCC--CceeeeEEEEECCEEEEeccCC--------CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCC
Confidence 6899999998542 2446788999999999998741 2357999999999 999999999999999998877
Q ss_pred CChhHhhhh---hccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC---HHHHHHHHHHhCCeEEEecccccCC
Q 019100 101 VDLMTWLHD---RIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCG 174 (346)
Q Consensus 101 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~g 174 (346)
.++.+|+.. ..+.....+++++.+..++..+.+++++|+||+.|+.... .+.+.+.....+++..+.. .
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~~~~~~~~~~~a~~~~~~r~~~~~----~- 145 (375)
T PRK07213 71 KSLDELVKPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREGGIKGINLLKKASSDLPIKPIILG----R- 145 (375)
T ss_pred CCHHHHccCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhcChhHHHHHHHHHHcCCCceEEec----C-
Confidence 777777631 1112234677888899999999999999999999974222 3344555667777764311 1
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHH
Q 019100 175 EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (346)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~ 254 (346)
+.... .+...+..+..++. .+ ++++++...++++.++++++.|+++|+++++|+.|+..+.+...
T Consensus 146 ---~~~~~---~~~~~~~~~~~~~~----~~-----g~~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~ 210 (375)
T PRK07213 146 ---PTEAD---ENELKKEIREILKN----SD-----GIGLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSL 210 (375)
T ss_pred ---CCccc---chhhHHHHHHHHHh----cc-----cccccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHH
Confidence 00000 11111112222221 11 24566667789999999999999999999999999998888888
Q ss_pred HhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCC
Q 019100 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGA 333 (346)
Q Consensus 255 ~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~ 333 (346)
+.+|.. +++.+.+.|+. ++ .++|+.+++++++++|++.|+.+++||.+|.++ .+.+|+++|+++||+|++|||+.
T Consensus 211 ~~~G~~--~v~~~~~~G~~-~~-~i~H~~~~~~~~i~~la~~g~~v~~~P~sn~~l~~g~~~v~~l~~~Gv~v~lGTD~~ 286 (375)
T PRK07213 211 EKYGMT--EIERLINLGFK-PD-FIVHATHPSNDDLELLKENNIPVVVCPRANASFNVGLPPLNEMLEKGILLGIGTDNF 286 (375)
T ss_pred HHcCCC--hHHHHHhcCCC-CC-EEEECCCCCHHHHHHHHHcCCcEEECCcchhhhccCCccHHHHHHCCCEEEEeeCCC
Confidence 877765 88999999986 56 479999999999999999999999999999988 88999999999999999999997
Q ss_pred CCCCCCCCCCCC
Q 019100 334 PSNNRMSIGPFY 345 (346)
Q Consensus 334 ~~~~~~~~~~~~ 345 (346)
++ ++.||++|+
T Consensus 287 ~~-~~~~~~~e~ 297 (375)
T PRK07213 287 MA-NSPSIFREM 297 (375)
T ss_pred CC-chHhHHHHH
Confidence 65 467888764
No 25
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.8e-36 Score=259.24 Aligned_cols=303 Identities=25% Similarity=0.353 Sum_probs=246.8
Q ss_pred CCCceeeeeeEEEeC-CEEEEeccChhhhhhh-----cCCCCeEEecCCCEEeecccccccCC-cccccccccCCCChhH
Q 019100 33 KESRVFRNGGVFVVQ-DRIKAIGQSADILQQF-----SQMADQIIDLQSQILLPGFVNTHVHT-SQQLAKGIADDVDLMT 105 (346)
Q Consensus 33 ~~~~~~~~~~v~V~~-g~I~~v~~~~~~~~~~-----~~~~~~viD~~g~~v~PGfID~H~H~-~~~~~~g~~~~~~~~~ 105 (346)
.+..++++..+.|.+ |+|+.|++........ ..+..+++++.|.++||||||+|+|. -+-+..+.+.+.++.+
T Consensus 20 ~~l~i~e~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~ 99 (439)
T KOG3968|consen 20 GELEILEGSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQ 99 (439)
T ss_pred cceEEecCcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHH
Confidence 567788888889987 9999999865322111 11234678999999999999999994 4444566667889999
Q ss_pred hhhhhccccccCCCc-hHHHHHHHHHHHHHHhcCceEeeecCcCCH---HHHHHHHHHhCCeEEEecccccCCCCCCccc
Q 019100 106 WLHDRIWPYESNMTE-EDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQSTMDCGEGLPASW 181 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~ 181 (346)
|+.+..|+....++. ++.+..-...+++++++|+||+..+.+.+. ..+++++...|+|.++++..++++. .++..
T Consensus 100 wl~~~~f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~-~~~p~ 178 (439)
T KOG3968|consen 100 WLGKYTFPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKVCMDCNA-HAVPK 178 (439)
T ss_pred HhhcceeecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeeehhccCC-CCCCc
Confidence 999999999988887 444444455778999999999998875443 3567888999999999999998884 23444
Q ss_pred ccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCC
Q 019100 182 AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 261 (346)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~ 261 (346)
.....++.+....+++........+.....+.|.....++.+.+++.-++|+++.+.+..|..+...+++.+.+-++...
T Consensus 179 ~~~~~E~si~~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~ 258 (439)
T KOG3968|consen 179 GVETTEESIESTEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKL 258 (439)
T ss_pred cchhHHHHHHHHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcc
Confidence 44456666666777766555444445555556667778899999999999999999999999999999999999888767
Q ss_pred CHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 262 GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 262 ~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
.+...++..++|++.++++|+.+++++++..|+++|..+++||.||..| +|.++++++++.||.|++|||.++++
T Consensus 259 ~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~svshCP~Sn~~L~sG~~~vr~lL~~~v~VgLGtDv~~~s 334 (439)
T KOG3968|consen 259 SYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCSVSHCPTSNSILGSGIPRVRELLDIGVIVGLGTDVSGCS 334 (439)
T ss_pred cchHHHHHhcccchHhHhhhheecCchhHHHHHhcCCceEECCcchhhhccCCccHHHHHhcCceEeecCCccccc
Confidence 7889999999999999999999999999999999999999999999999 99999999999999999999988644
No 26
>PRK09230 cytosine deaminase; Provisional
Probab=100.00 E-value=5.5e-33 Score=257.52 Aligned_cols=293 Identities=16% Similarity=0.173 Sum_probs=204.1
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
..++|+|+++++. . . ..+|+|+||+|++|++..+.. ..++++||++|++|+|||||+|+|+..+.+++..
T Consensus 4 ~~~li~~~~~~~~--~-~---~~~i~i~~g~I~~i~~~~~~~----~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~ 73 (426)
T PRK09230 4 ALMTIKNARLPGK--E-G---LWQITIEDGKISAIEPQSEAS----LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEP 73 (426)
T ss_pred ceEEEECcEEcCC--C-e---eEEEEEECCEEEEecCCCCCC----CCCCceEeCCCCEeccceeEEEEccccceecCCC
Confidence 4689999999852 2 1 258999999999999864311 1246899999999999999999999998788754
Q ss_pred ---CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC------HHHHHHHHHHhCCeEEEecc
Q 019100 99 ---DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH------VSEMAKAVELLGLRACLVQS 169 (346)
Q Consensus 99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~------~~~~~~~~~~~g~~~~~~~~ 169 (346)
.+.++.+|+... ++.....++++.+..+...+.+++++|+|+++++.... .+.+.+..+..+...-+...
T Consensus 74 ~~~~~~~l~~~i~~~-~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~~~~~~~i~ 152 (426)
T PRK09230 74 NWNQSGTLFEGIERW-AERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQIV 152 (426)
T ss_pred ccCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhhCcceEEEE
Confidence 345677888664 55556678899899999999999999999999876321 12233333332211111100
Q ss_pred -cccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccC--CHHHHHHHHHHHHHcCCeEEEEecCC
Q 019100 170 -TMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNA--TDRLLLETRDMAREFKTGIHMHVAEI 246 (346)
Q Consensus 170 -~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~a~~~g~~v~~H~~~~ 246 (346)
+...+ .+.. ....+.++...+ . ..+ + ++..|+..... +++.++.++++|+++|+++++|+.|.
T Consensus 153 a~~~~~-~~~~----~~~~~~l~~a~~----~---~~~-~-vg~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~ 218 (426)
T PRK09230 153 AFPQEG-ILSY----PNGEALLEEALR----L---GAD-V-VGAIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEI 218 (426)
T ss_pred eccCcc-ccCC----ccHHHHHHHHHH----c---CCC-E-EeCCCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence 11111 0111 011222222222 1 112 1 23344443333 58899999999999999999999987
Q ss_pred hhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccC-------ChhhHHHHHhcCCeEEEChhhhccc---------
Q 019100 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV-------NHTEIGLLSRAGVKVSHCPASAMRM--------- 310 (346)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~-------~~~~i~~l~~~g~~v~~~p~~~~~l--------- 310 (346)
..+...... ++++++++.| +++++++.||.++ +++++++|++.|+.+++||.+|+++
T Consensus 219 ~~~~~~~~~------~~~~~~~~~g-l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~cP~sn~~l~~~~~~~p~ 291 (426)
T PRK09230 219 DDEQSRFVE------TVAALAHREG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPK 291 (426)
T ss_pred CCcchHHHH------HHHHHHHHhC-CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhcCCCCCCCC
Confidence 765443222 1788889999 6889999999999 4788999999999999999999866
Q ss_pred -cccccHHHHHHcCCcEEEcCCCCCC----CCCCCCCC
Q 019100 311 -LGFAPIKEMLHADICVSLGTDGAPS----NNRMSIGP 343 (346)
Q Consensus 311 -~~~~~~~~~~~~Gv~v~~GTD~~~~----~~~~~~~~ 343 (346)
.|..|+++|+++||+|++|||+... +.+.||++
T Consensus 292 ~~g~~pi~~l~~aGv~V~lGTD~~~d~~~~~~~~d~~~ 329 (426)
T PRK09230 292 RRGITRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQ 329 (426)
T ss_pred CCCCcCHHHHHHCCCeEEEecCCCCCCCcCCCCCCHHH
Confidence 3567899999999999999997531 23456554
No 27
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=100.00 E-value=3.2e-33 Score=259.30 Aligned_cols=294 Identities=18% Similarity=0.180 Sum_probs=199.8
Q ss_pred EEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCC
Q 019100 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDV 101 (346)
Q Consensus 22 li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~ 101 (346)
.|+|++|+++ . .++.+|+|+||+|++|++..+. .+++++||++|++|+|||||+|+|+..+.+++...+.
T Consensus 1 ~~~~~~~~~~--~---~~~~~v~I~~g~I~~Vg~~~~~-----~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~ 70 (398)
T cd01293 1 LLRNARLADG--G---TALVDIAIEDGRIAAIGPALAV-----PPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNN 70 (398)
T ss_pred CeeeeEEeCC--C---ceEEEEEEECCEEEEEecCCCC-----CCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCC
Confidence 3789999963 1 2678999999999999986542 2357899999999999999999999988778765544
Q ss_pred ChhHhhhhh--ccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC-------HHHHHHHHHHhCCeEEEeccccc
Q 019100 102 DLMTWLHDR--IWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-------VSEMAKAVELLGLRACLVQSTMD 172 (346)
Q Consensus 102 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~ 172 (346)
+...|+... +++....+++++.+......+.+++++|||+++++.... .+...+.....+.+.......+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (398)
T cd01293 71 SGGTLLEAIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAF- 149 (398)
T ss_pred CccccHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEec-
Confidence 433443221 112335678888888888899999999999998765211 2333444444443332221111
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHH
Q 019100 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (346)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 252 (346)
++..... . ....++++.+...+...+ ..+.......++++.++++++.|+++|+++++|+.+...+...
T Consensus 150 -----~~~~~~~-~----~~~~~~v~~~~~~g~~~~-~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~ 218 (398)
T cd01293 150 -----PQHGLLS-T----PGGEELMREALKMGADVV-GGIPPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSR 218 (398)
T ss_pred -----cCccccC-C----CCHHHHHHHHHHhCCCEE-eCCCCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchh
Confidence 1100000 0 122333333332222222 2233333456788999999999999999999999887654322
Q ss_pred HHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh-------hhHHHHHhcCCeEEEChhhhccc----------ccccc
Q 019100 253 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKVSHCPASAMRM----------LGFAP 315 (346)
Q Consensus 253 ~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~-------~~i~~l~~~g~~v~~~p~~~~~l----------~~~~~ 315 (346)
.... .++.+.+.|++ +++.++|+.++++ +.+++|++.|+.+++||.++.++ .+..+
T Consensus 219 ~~~~------~~~~~~~~g~~-~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~~~~~~~~~~~ 291 (398)
T cd01293 219 TLEE------LAEEAERRGMQ-GRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGVTP 291 (398)
T ss_pred HHHH------HHHHHHHhCCC-CCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhcccccCCCCCCCCCc
Confidence 2221 46667788887 7888999998863 44999999999999999988654 45789
Q ss_pred HHHHHHcCCcEEEcCCCCC----CCCCCCCCCC
Q 019100 316 IKEMLHADICVSLGTDGAP----SNNRMSIGPF 344 (346)
Q Consensus 316 ~~~~~~~Gv~v~~GTD~~~----~~~~~~~~~~ 344 (346)
+++++++|++|++|||+.. ++++.||+++
T Consensus 292 ~~~~~~~Gv~v~lGTD~~~~~~~~~~~~~~~~~ 324 (398)
T cd01293 292 VKELRAAGVNVALGSDNVRDPWYPFGSGDMLEV 324 (398)
T ss_pred HHHHHHCCCeEEECCCCCCCCCcCCCCCCHHHH
Confidence 9999999999999999852 3445577654
No 28
>PRK09356 imidazolonepropionase; Validated
Probab=100.00 E-value=1.9e-31 Score=247.69 Aligned_cols=292 Identities=17% Similarity=0.241 Sum_probs=191.3
Q ss_pred cceEEEEcCEEEecCCCC----ceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccc
Q 019100 18 SSTMILHNAVIVTMDKES----RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~----~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 93 (346)
|.+++|+|++|++++... +++++++|+|+||||++|++..+.+. ..++++||++|++|+|||||+|+|+..+.
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~---~~~~~~iD~~g~~v~PG~id~H~Hl~~~~ 78 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA---AYAAEVIDAGGKLVTPGLIDCHTHLVFGG 78 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccc---ccCceEEECCCCEEeeceEecCCCcccCC
Confidence 567999999999876543 67889999999999999998654311 12358999999999999999999998754
Q ss_pred cccc-----cCCCChhHhhhhh--c---cccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC--CH---HHHHHHHH
Q 019100 94 AKGI-----ADDVDLMTWLHDR--I---WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--HV---SEMAKAVE 158 (346)
Q Consensus 94 ~~g~-----~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~--~~---~~~~~~~~ 158 (346)
.++. ..+.++.+|+... + +.....+++++.+..++..+.+++++|||+++++... .. ....+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~ 158 (406)
T PRK09356 79 NRANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVAR 158 (406)
T ss_pred CcHHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHHH
Confidence 4442 1122333333211 1 1123346677888888889999999999999976411 11 12233333
Q ss_pred Hh----CCeEEEecccccCCCCCCcccccCChHHHHHHH-HHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHH
Q 019100 159 LL----GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQ-KELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAR 233 (346)
Q Consensus 159 ~~----g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~ 233 (346)
.. +++... ... .+..+++.. ....+..++.. .++++.+... +.+...........++++++++++++|+
T Consensus 159 ~~~~~~~i~~~~--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~~A~ 232 (406)
T PRK09356 159 RLGEEHPVDVVT--TFL-GAHAVPPEY-KGRPDAYIDLVCEEMLPAVAEE--GLADAVDVFCETGAFSVEQSERVLEAAK 232 (406)
T ss_pred HHhhhCCCceEe--eee-ecccCCccc-cCCHHHHHHHHHHHHhHHHHhc--CCcceEEEEecCCCCCHHHHHHHHHHHH
Confidence 33 333211 111 111223222 11223333332 2234433221 2232222233344568999999999999
Q ss_pred HcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc--c
Q 019100 234 EFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM--L 311 (346)
Q Consensus 234 ~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l--~ 311 (346)
++|+++++|+.+.... ...+.....+. ..+.|+.++++++++++++.|+.+++||.++..+ .
T Consensus 233 ~~g~~v~~H~~~~~~~------------~~~~~~~~~~~----~~~~H~~~~~~~~~~~la~~g~~~~~~P~~~~~l~~~ 296 (406)
T PRK09356 233 ALGLPVKIHAEQLSNL------------GGAELAAEYGA----LSADHLEYLDEAGIAAMAEAGTVAVLLPGAFYFLRET 296 (406)
T ss_pred HCCCCEEEEEecccCC------------CHHHHHHHcCC----cEehHhhcCCHHHHHHHHHhCCEEEECccchhhcCcc
Confidence 9999999999864321 12333333343 3468999999999999999999999999998766 4
Q ss_pred ccccHHHHHHcCCcEEEcCCCCC
Q 019100 312 GFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 312 ~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
+..|+++++++|+++++|||+.+
T Consensus 297 ~~~~~~~l~~~Gi~v~lgtD~~~ 319 (406)
T PRK09356 297 QYPPARLLRDAGVPVALATDFNP 319 (406)
T ss_pred cCchHHHHHHCCCeEEEeCCCCC
Confidence 68899999999999999999865
No 29
>PRK14085 imidazolonepropionase; Provisional
Probab=100.00 E-value=2.4e-31 Score=244.31 Aligned_cols=287 Identities=17% Similarity=0.242 Sum_probs=188.5
Q ss_pred eEEEEc-CEEEecCCCC-----ceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccc
Q 019100 20 TMILHN-AVIVTMDKES-----RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (346)
Q Consensus 20 ~~li~n-~~i~~~d~~~-----~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 93 (346)
+++|+| +.|+++|... +++++++|+|+||+|++|++..+. ..++++||++|++|+|||||+|+|+....
T Consensus 2 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~-----~~~~~~iD~~g~~v~PGlId~H~Hl~~~~ 76 (382)
T PRK14085 2 STLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADA-----PAADERVDAGGRAVLPGFVDSHSHLVFAG 76 (382)
T ss_pred cEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccC-----CCCCeEEeCCCCEEecCeEecCcCccccC
Confidence 578999 5999998655 678999999999999999986432 23568999999999999999999997655
Q ss_pred ccccc--CCCChhHhhhhhc---cccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC--CHHHHHHHHHHhCCeEEE
Q 019100 94 AKGIA--DDVDLMTWLHDRI---WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--HVSEMAKAVELLGLRACL 166 (346)
Q Consensus 94 ~~g~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~--~~~~~~~~~~~~g~~~~~ 166 (346)
.|+.. ...+...|..+.+ ++....+++++.+..+...+.+++++|+|++++++.. ..+...+..+..+ +...
T Consensus 77 ~r~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (382)
T PRK14085 77 DRSAEFAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGYGLTVEDEARSARIAA-EFTD 155 (382)
T ss_pred ChhHHHHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcCCCCHHHHHHHHHHHH-Hhhh
Confidence 55421 0011111111111 2333456788888888899999999999999997632 2333333222211 1100
Q ss_pred ecccccCCCCCCcccccCChHHHHHHHH-HHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecC
Q 019100 167 VQSTMDCGEGLPASWAVRTTDDCIQSQK-ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245 (346)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 245 (346)
..... .+...++.+. ...+..++... .++.... .....+++.... ...++++++++++.|+++|+++.+|+.+
T Consensus 156 ~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~idi~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 229 (382)
T PRK14085 156 EVTFL-GAHVVPPEYA-GDADEYVDLVCGPMLDAVA-PHARWIDVFCER---GAFDEDQSRRVLTAGRAAGLGLRVHGNQ 229 (382)
T ss_pred cceee-ccccCCcccC-CCHHHHHHHHHHHHHHHHH-HhCCeEEEEecC---CCCCHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 00000 0111121111 12233333221 1111111 113344443322 2457899999999999999999999976
Q ss_pred ChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCC
Q 019100 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADI 324 (346)
Q Consensus 246 ~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv 324 (346)
.... ..++.+.+.|.+ .++|+.++++++++++++.|+.+++||.++... .+..|+++++++|+
T Consensus 230 ~~~~------------~~v~~~~~~g~~----~i~H~~~l~~~~~~~la~~gv~~~~~P~~~~~~~~~~~~~~~l~~aGv 293 (382)
T PRK14085 230 LGPG------------PGVRLAVELGAA----SVDHCTYLTDADVDALAGSGTVATLLPGAEFSTRQPYPDARRLLDAGV 293 (382)
T ss_pred ccCC------------hHHHHHHHcCCC----cHHHhCCCCHHHHHHHHHcCCEEEECcHHHHhcCCCCchHHHHHHCCC
Confidence 3211 024444455554 368999999999999999999999999998766 67899999999999
Q ss_pred cEEEcCCCCC
Q 019100 325 CVSLGTDGAP 334 (346)
Q Consensus 325 ~v~~GTD~~~ 334 (346)
+|++|||+++
T Consensus 294 ~v~lgsD~~~ 303 (382)
T PRK14085 294 TVALASDCNP 303 (382)
T ss_pred cEEEEeCCCC
Confidence 9999999864
No 30
>PRK07572 cytosine deaminase; Validated
Probab=99.98 E-value=9.4e-31 Score=243.53 Aligned_cols=291 Identities=16% Similarity=0.172 Sum_probs=194.4
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc-
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA- 98 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~- 98 (346)
+++|+|+++++.. ...+|+|++|+|++|++..+ ....++||++|++|+|||||+|+|+..+..++..
T Consensus 3 ~~~i~~~~i~~~~------~~~~i~i~~g~I~~v~~~~~------~~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~ 70 (426)
T PRK07572 3 DLIVRNANLPDGR------TGIDIGIAGGRIAAVEPGLQ------AEAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPR 70 (426)
T ss_pred cEEEECeEECCCC------eeEEEEEECCEEEEecCCCC------CCcCceEeCCCCEEcccceehhhCcchhhccCCCC
Confidence 5789999999632 24589999999999987542 1245789999999999999999999887655542
Q ss_pred --CCCChhHhhhhhcccc-ccCCCchHHHHHHHHHHHHHHhcCceEeeecCc---CC---HHHHHHHHHHhCCeEEEecc
Q 019100 99 --DDVDLMTWLHDRIWPY-ESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QH---VSEMAKAVELLGLRACLVQS 169 (346)
Q Consensus 99 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~---~~---~~~~~~~~~~~g~~~~~~~~ 169 (346)
.+..+.+|+. +|+. ...+++++.+......+.+++++|+|+++++.. .. ...+.+.....+-+......
T Consensus 71 ~~~~g~l~e~l~--~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (426)
T PRK07572 71 VNASGTLLEGIA--LWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLV 148 (426)
T ss_pred CCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEE
Confidence 3455666762 2222 234678888888889999999999999999632 11 12222222222222111100
Q ss_pred cccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCC--HHHHHHHHHHHHHcCCeEEEEecCCh
Q 019100 170 TMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNAT--DRLLLETRDMAREFKTGIHMHVAEIP 247 (346)
Q Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~a~~~g~~v~~H~~~~~ 247 (346)
. ++....... .......++.++ .+...+ +-.|+....++ .+.++.++++|+++|+++++|+.++.
T Consensus 149 a------~~~~g~~~~-~~~~~~~~~~l~----~g~d~i--Gg~p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~ 215 (426)
T PRK07572 149 A------FPQDGVLRS-PGAVDNLERALD----MGVDVV--GGIPHFERTMADGAESVRLLCEIAAERGLRVDMHCDESD 215 (426)
T ss_pred e------ccChhhccC-ccHHHHHHHHHH----cCCCEE--eCCCCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 1 111000000 011112222222 221222 11233333333 48999999999999999999998877
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh-------hhHHHHHhcCCeEEEChhhhccc----------
Q 019100 248 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKVSHCPASAMRM---------- 310 (346)
Q Consensus 248 ~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~-------~~i~~l~~~g~~v~~~p~~~~~l---------- 310 (346)
.......+. ..+.+.+.|+++ ++.++|+.++++ +++++|++.|+.+++||.+++.+
T Consensus 216 ~~~~~~~~~------~~~~~~~~G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~P~~n~~l~~~~~~~~~~ 288 (426)
T PRK07572 216 DPLSRHIET------LAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIANPLINITLQGRHDTYPKR 288 (426)
T ss_pred ChhHHHHHH------HHHHHHHhCCCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEECchhhhhhcCCCCCCCCC
Confidence 655444332 556677889988 888899998876 55999999999999999988654
Q ss_pred cccccHHHHHHcCCcEEEcCCCCC----CCCCCCCCCC
Q 019100 311 LGFAPIKEMLHADICVSLGTDGAP----SNNRMSIGPF 344 (346)
Q Consensus 311 ~~~~~~~~~~~~Gv~v~~GTD~~~----~~~~~~~~~~ 344 (346)
.+..++++++++||+|++|||+.. ++++.||+++
T Consensus 289 ~g~~~v~~l~~~GV~v~lGtD~~~~~~~~~~~~~~~e~ 326 (426)
T PRK07572 289 RGMTRVPELMAAGINVAFGHDCVMDPWYSLGSGDMLEV 326 (426)
T ss_pred CCCcCHHHHHHCCCcEEEecCCCCCCCCCCCCCCHHHH
Confidence 256799999999999999999852 3456677654
No 31
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.97 E-value=7.8e-30 Score=234.67 Aligned_cols=277 Identities=19% Similarity=0.238 Sum_probs=184.9
Q ss_pred eeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc-----cCCCChhHhhhhh--c
Q 019100 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI-----ADDVDLMTWLHDR--I 111 (346)
Q Consensus 39 ~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~-----~~~~~~~~~~~~~--~ 111 (346)
++++|+|+||+|++|++..+.+ ...++++||++|++|+|||||+|+|+..+..++. ..+.++.+|+... +
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~---~~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALP---GEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGI 78 (377)
T ss_pred CceEEEEECCEEEEEechhhCC---cccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCCh
Confidence 5689999999999999853221 1125689999999999999999999988766663 2455778887541 2
Q ss_pred ---cccccCCCchHHHHHHHHHHHHHHhcCceEeeecC--cCCH---HHHHHHHH----HhCCeEEEecccccCCCCCCc
Q 019100 112 ---WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--GQHV---SEMAKAVE----LLGLRACLVQSTMDCGEGLPA 179 (346)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~--~~~~---~~~~~~~~----~~g~~~~~~~~~~~~g~~~~~ 179 (346)
++....+++++.+..+...+.+++++|+|++.... +... ....+... ..+++..... . ....++.
T Consensus 79 ~~~~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~--~-~~~~~~~ 155 (377)
T TIGR01224 79 LSTVRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTTF--L-GAHAVPP 155 (377)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeee--e-ecccCCc
Confidence 25556788899999999999999999999984321 1111 12223333 3444443321 1 1111121
Q ss_pred ccccCChHHHHHHH-HHHHHHHcCCCCCCeEE--EEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh
Q 019100 180 SWAVRTTDDCIQSQ-KELYAKHHHAADGRIRI--WFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256 (346)
Q Consensus 180 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 256 (346)
.... ..++.++.. ..+++++... +.+.. .++++ ...+++.+++++++|+++|+++++|+.+....
T Consensus 156 ~~~~-~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~--~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~------- 223 (377)
T TIGR01224 156 EFQG-RPDDYVDGICEELIPQVAEE--GLASFADVFCEA--GVFSVEQSRRILQAAQEAGLPVKLHAEELSNL------- 223 (377)
T ss_pred cccC-CHHHHHHHHHHHHHHHHHHh--CCCCeeEEEecC--CCcCHHHHHHHHHHHHHCCCCEEEEecCCCCC-------
Confidence 1111 122233222 2244443321 12211 23333 23457889999999999999999999875321
Q ss_pred cCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCC-
Q 019100 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP- 334 (346)
Q Consensus 257 ~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~- 334 (346)
..++.+.+.|.+ .+.|+.++++++++++++.|+.+++||.++..+ .+..|+++++++|+++++|||+.+
T Consensus 224 -----~~~~~~~~~g~~----~~~H~~~~~~~~l~~la~~g~~~~~~P~~~~~l~~~~~p~~~l~~~Gv~v~lgTD~~~~ 294 (377)
T TIGR01224 224 -----GGAELAAKLGAV----SADHLEHASDAGIKALAEAGTVAVLLPGTTFYLRETYPPARQLIDYGVPVALATDLNPG 294 (377)
T ss_pred -----CHHHHHHHcCCC----ccHHHhcCCHHHHHHHHhcCCEEEECchHHHhcCCcCccHHHHHHCCCCEEEECCCCCC
Confidence 133444444433 457999999999999999999999999999877 678999999999999999999765
Q ss_pred CCCCCCCC
Q 019100 335 SNNRMSIG 342 (346)
Q Consensus 335 ~~~~~~~~ 342 (346)
+++..+|+
T Consensus 295 ~~~~~~~~ 302 (377)
T TIGR01224 295 SSPTLSMQ 302 (377)
T ss_pred CChhHHHH
Confidence 55544554
No 32
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.97 E-value=1.2e-29 Score=221.56 Aligned_cols=227 Identities=19% Similarity=0.266 Sum_probs=171.9
Q ss_pred EEeecccccccCCcccccccccCCCChhHhh---hhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC---CH
Q 019100 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWL---HDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HV 150 (346)
Q Consensus 77 ~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~---~~ 150 (346)
+|+|||||+|+|+.++.+||...+.++.+|+ .+..|+....+++++.+..++..+.+++++|+||+.|+... ..
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~ 80 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREGGVEGI 80 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCcchhHH
Confidence 5899999999999999999998888887866 23345666778999999999999999999999999998532 34
Q ss_pred HHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHH
Q 019100 151 SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRD 230 (346)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (346)
+.+.+..++.|+|. ...++. +.. .+..+ ++ .. +...+++++...++ ++++++
T Consensus 81 ~a~~~a~~~~g~r~---~~~~~~----~~~------~~~~~---~~-~~--------~~~~~~~~~~~~~~---l~~~~~ 132 (263)
T cd01305 81 ELLRRALGKLPVPF---EVILGR----PTE------PDDPE---IL-LE--------VADGLGLSSANDVD---LEDILE 132 (263)
T ss_pred HHHHHHHHhcCCCc---eEEecc----CCc------chHHH---HH-Hh--------hcccccCCCCCccC---HHHHHH
Confidence 56778888899984 112221 110 01111 11 11 11135565555555 999999
Q ss_pred HHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc
Q 019100 231 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 310 (346)
Q Consensus 231 ~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l 310 (346)
+|+++|+++++|+.|...+. | .+.++.+.+. +++. ++|+.++++++++++++.|+.+++||.+|.++
T Consensus 133 ~A~~~g~~v~~H~~e~~~~~-------g--~~~i~~~~~~---~~~~-i~H~~~l~~~~~~~la~~g~~v~~~P~sn~~l 199 (263)
T cd01305 133 LLRRRGKLFAIHASETRESV-------G--MTDIERALDL---EPDL-LVHGTHLTDEDLELVRENGVPVVLCPRSNLYF 199 (263)
T ss_pred HHHHCCCeeEEecCCCCCCC-------C--chhHHHHHhC---CCCE-EEEcCCCCHHHHHHHHHcCCcEEEChhhHHHh
Confidence 99999999999999876532 1 1145555454 4454 69999999999999999999999999999888
Q ss_pred -cccccHHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 311 -LGFAPIKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 311 -~~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
.+..|+++++++||+|++|||+.+++ +.||++++
T Consensus 200 ~~g~~p~~~l~~~Gv~v~lGtD~~~~~-~~~~~~~~ 234 (263)
T cd01305 200 GVGIPPVAELLKLGIKVLLGTDNVMVN-EPDMWAEM 234 (263)
T ss_pred CCCCCCHHHHHHCCCcEEEECCCCccC-CCCHHHHH
Confidence 78999999999999999999987654 67888764
No 33
>PRK05985 cytosine deaminase; Provisional
Probab=99.96 E-value=2.5e-28 Score=225.33 Aligned_cols=290 Identities=15% Similarity=0.147 Sum_probs=184.7
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
++++|+|++|+++. ..+|+|++|+|++|++..+. ..+.++||++|++|+|||||+|+|+....++-..
T Consensus 2 ~~~~i~~~~i~~~~-------~~~v~i~~g~i~~i~~~~~~-----~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~ 69 (391)
T PRK05985 2 TDLLFRNVRPAGGA-------AVDILIRDGRIAAIGPALAA-----PPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPW 69 (391)
T ss_pred CCEEEECcEECCCC-------eeEEEEECCEEEEecCCCCC-----CCCCcEEECCCCEEecceEeeEEccCccccCCcc
Confidence 46899999999632 35899999999999986432 2245789999999999999999999764332111
Q ss_pred C----CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-------CHHHHHHHHHHhCCeEEEe
Q 019100 99 D----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-------HVSEMAKAVELLGLRACLV 167 (346)
Q Consensus 99 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-------~~~~~~~~~~~~g~~~~~~ 167 (346)
. ...+.+++.... .....+..+....+...+.+++++|+|+++++... ..+.+.+..+.. +..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 145 (391)
T PRK05985 70 YPNEPGPSLRERIANER--RRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETL--RGLID 145 (391)
T ss_pred ccCCCCCCHHHHHHHHH--HhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHh--hCccc
Confidence 1 111222221100 01233445666777778899999999999887521 133444443332 22222
Q ss_pred cccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCCh
Q 019100 168 QSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (346)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 247 (346)
..++...+ .......... ++++.....+.+ +..++.|+....++++.+++++++|+++|+++++|+.+..
T Consensus 146 ~~~v~~~~--~g~~~~~~~~-------~ll~~~l~~g~~-~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~ 215 (391)
T PRK05985 146 IQIVAFPQ--SGVLSRPGTA-------ELLDAALRAGAD-VVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPG 215 (391)
T ss_pred EEEEeccC--ccccCCcCHH-------HHHHHHHHcCCC-EEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCC
Confidence 22222211 0000000112 222222222222 3444566677788899999999999999999999998876
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC---h----hhHHHHHhcCCeEEEChhhhccccccccHHHHH
Q 019100 248 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---H----TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEML 320 (346)
Q Consensus 248 ~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~---~----~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~ 320 (346)
......... ..+...+.|+.+ ++.++|+..++ + ++++++++.|+.+++|+... .+..|+++|+
T Consensus 216 d~~~~~~~~------~~e~~~~~g~~~-~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~~~~~---~~~~~~~~l~ 285 (391)
T PRK05985 216 ELGAFQLER------IAARTRALGMQG-RVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTNAPGS---VPVPPVAALR 285 (391)
T ss_pred CccHHHHHH------HHHHHHHhCCCC-CEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEeCCCC---CCCCCHHHHH
Confidence 432211110 344455667644 67889998764 3 55799999999999986432 5789999999
Q ss_pred HcCCcEEEcCCCCC----CCCCCCCCCC
Q 019100 321 HADICVSLGTDGAP----SNNRMSIGPF 344 (346)
Q Consensus 321 ~~Gv~v~~GTD~~~----~~~~~~~~~~ 344 (346)
++|++|++|||+.. ++++.||+++
T Consensus 286 ~~Gv~v~lGtD~~~~~~~p~~~~~~~~~ 313 (391)
T PRK05985 286 AAGVTVFGGNDGIRDTWWPYGNGDMLER 313 (391)
T ss_pred HCCCeEEEecCCCCCCCcCCCCCcHHHH
Confidence 99999999999863 2245666643
No 34
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.96 E-value=1.6e-27 Score=218.88 Aligned_cols=270 Identities=18% Similarity=0.250 Sum_probs=173.6
Q ss_pred EEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc-----CCCChhHhhhhh---cc--
Q 019100 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA-----DDVDLMTWLHDR---IW-- 112 (346)
Q Consensus 43 v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~-----~~~~~~~~~~~~---~~-- 112 (346)
|+|+||||++|++..+.+.. ...++++||++|++|+|||||+|+|+..+..++.. .+..+.+|+... .+
T Consensus 1 i~i~~g~I~~ig~~~~~~~~-~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAP-GPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTV 79 (371)
T ss_pred CEEECCEEEEEeCchhcccc-cCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHH
Confidence 57999999999986543110 01346899999999999999999999887655421 344556666531 11
Q ss_pred ccccCCCchHHHHHHHHHHHHHHhcCceEeeecC--cCC---HHHHHHHHHHhCCe--EEEecccccCCCCCCcccccCC
Q 019100 113 PYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--GQH---VSEMAKAVELLGLR--ACLVQSTMDCGEGLPASWAVRT 185 (346)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~--~~~---~~~~~~~~~~~g~~--~~~~~~~~~~g~~~~~~~~~~~ 185 (346)
+....+++++.+..++..+.++++.|+|+++++. ... .....+.+.+.+.+ ..+...+.+ +..+++....
T Consensus 80 ~~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~-~~~~p~~~~~-- 156 (371)
T cd01296 80 RATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLG-AHAVPPEYKG-- 156 (371)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeee-cccCCcccCC--
Confidence 3445677888888899999999999999999842 111 12233344433332 111111110 1112221111
Q ss_pred hHHHHH-HHHHHHHHHcC-CCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCH
Q 019100 186 TDDCIQ-SQKELYAKHHH-AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT 263 (346)
Q Consensus 186 ~~~~~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~ 263 (346)
....++ ...++++.+.. .....++. .+.. ...+.+.++++++.|+++|+++++|+.+.... ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~------------~~ 221 (371)
T cd01296 157 REEYIDLVIEEVLPAVAEENLADFCDV-FCEK--GAFSLEQSRRILEAAKEAGLPVKIHADELSNI------------GG 221 (371)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEE-eecC--CccCHHHHHHHHHHHHHCCCeEEEEEcCcCCC------------CH
Confidence 012221 12334433321 11111222 2222 23458899999999999999999999875321 12
Q ss_pred HHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCC
Q 019100 264 VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 264 ~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
.+.....+.. .++|+.++++++++++++.|+.+++||.++..+ .+..|+++++++|+++++|||+.|.
T Consensus 222 ~~~~~~~g~~----~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~l~~~~~~~~~l~~~Gv~v~lgsD~~p~ 290 (371)
T cd01296 222 AELAAELGAL----SADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRETYPPARKLIDAGVPVALGTDFNPG 290 (371)
T ss_pred HHHHHHcCCC----eeHHhcCCCHHHHHHHHHcCCeEEEChHHHHHhCCCCCCHHHHHHCCCcEEEecCCCCC
Confidence 3333344432 468999999999999999999999999998777 6688999999999999999998543
No 35
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=214.03 Aligned_cols=299 Identities=20% Similarity=0.221 Sum_probs=184.7
Q ss_pred CcceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccc---
Q 019100 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL--- 93 (346)
Q Consensus 17 ~~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~--- 93 (346)
++.+++++|++|+|++.+.+ ...+|+|+||||++||+..+..... ++..++||++|++|+|||||+|.|+....
T Consensus 3 ~~adlil~nG~i~T~~~~~p--~aeAvaI~dGrI~avG~~~~~~~~~-~~~t~viDL~Gk~v~PGfvDaH~Hl~~~G~~~ 79 (535)
T COG1574 3 MAADLILHNGRIYTMDEARP--TAEAVAIKDGRIVAVGSDAELKALA-GPATEVIDLKGKFVLPGFVDAHLHLISGGLSL 79 (535)
T ss_pred cccceeEECCEEEeccCCCc--ceeEEEEcCCEEEEEcChHHHHhhc-CCCceEEeCCCCEeccccchhhHHHHHhhhhh
Confidence 35679999999999997766 4569999999999999988765432 35679999999999999999999996321
Q ss_pred --------------------------------cccccCC-------CChhH---------------------hhhhhc--
Q 019100 94 --------------------------------AKGIADD-------VDLMT---------------------WLHDRI-- 111 (346)
Q Consensus 94 --------------------------------~~g~~~~-------~~~~~---------------------~~~~~~-- 111 (346)
..|++++ .+... |++...
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~ 159 (535)
T COG1574 80 LELNLDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALR 159 (535)
T ss_pred hcccccccCCHHHHHHHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHH
Confidence 0111100 00000 111000
Q ss_pred ----c-cc-------------------------------ccCCCchHHHHHHHH-HHHHHHhcCceEeeecCc--CCHH-
Q 019100 112 ----W-PY-------------------------------ESNMTEEDSYISTLL-CGIELIHSGVTCFAEAGG--QHVS- 151 (346)
Q Consensus 112 ----~-~~-------------------------------~~~~~~~~~~~~~~~-~~~~~l~~GvTt~~d~~~--~~~~- 151 (346)
. .. -....+......... +.+++++.|+|++.++.. ....
T Consensus 160 ~~Gi~~~t~~p~gg~~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~~~~~~~~~ 239 (535)
T COG1574 160 LAGITRDTPDPPGGIIGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAGYQGYYAD 239 (535)
T ss_pred HcCCCCCCCCCCCCcccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEcccccccchhH
Confidence 0 00 000001111111112 667888999999999974 1111
Q ss_pred -HHHHHHHHhCCeE-EEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCC----CCCCeEEEE-------------
Q 019100 152 -EMAKAVELLGLRA-CLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHA----ADGRIRIWF------------- 212 (346)
Q Consensus 152 -~~~~~~~~~g~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~------------- 212 (346)
..++.....+... .+...+.... ... ...... ..... ..+-++++.
T Consensus 240 ~~~~r~~~~~~~l~~rv~~~l~~~~--~~~------------~~~~~~-~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~ 304 (535)
T COG1574 240 YEAYRALAAGGELPVRVALLLFTED--LKE------------ERLDLL-RQTGAKGLLQGGGVKLFADGSLGERTALLAA 304 (535)
T ss_pred HHHHHHHHhcCcceEEEEeeccccc--hhh------------HHHhhc-ccCCccceeecCceEEEEeCCCCcchhhccC
Confidence 2233333333222 2222222110 000 000000 00000 000011111
Q ss_pred ------eecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC
Q 019100 213 ------GIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 286 (346)
Q Consensus 213 ------~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~ 286 (346)
.+.+....++++|.++++.|.++|+++.+|+.++.+ ++.+++. ..+...+.+..+.++.++|.+.++
T Consensus 305 ~y~d~~~~~G~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~A-v~~~Lda------fE~~~~~~~~~~~r~rieH~~~v~ 377 (535)
T COG1574 305 PYADGPGPSGELLLTEEELEELVRAADERGLPVAVHAIGDGA-VDAALDA------FEKARKKNGLKGLRHRIEHAELVS 377 (535)
T ss_pred cccCCCCCCCCcccCHHHHHHHHHHHHHCCCcEEEEEechHH-HHHHHHH------HHHHhhhcCCccCCceeeeeeecC
Confidence 112556779999999999999999999999998875 4444442 444566777778899999999999
Q ss_pred hhhHHHHHhcCCeEEEChhhhc--------cc-----cccccHHHHHHcCCcEEEcCCCCCCCCCCCCC
Q 019100 287 HTEIGLLSRAGVKVSHCPASAM--------RM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIG 342 (346)
Q Consensus 287 ~~~i~~l~~~g~~v~~~p~~~~--------~l-----~~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~ 342 (346)
+++++|+++.|+..++||..-. ++ ....|++.|+++|++++.|||++. ...|.|
T Consensus 378 ~~~i~R~~~Lgv~~svQP~f~~~~~~~~~~rlG~~r~~~~~p~~~ll~~G~~la~gSD~Pv--~~~dP~ 444 (535)
T COG1574 378 PDQIERFAKLGVIASVQPNFLFSDGEWYVDRLGEERASRSYPFRSLLKAGVPLAGGSDAPV--EPYDPW 444 (535)
T ss_pred HhHHHHHHhcCceEeeccccccccchHHHHhhhhhhhhccCcHHHHHHCCCeEeccCCCCC--CCCChH
Confidence 9999999999999999985321 11 235799999999999999999986 344443
No 36
>PRK06846 putative deaminase; Validated
Probab=99.95 E-value=2.2e-26 Score=213.36 Aligned_cols=294 Identities=14% Similarity=0.099 Sum_probs=184.5
Q ss_pred eEEEEcCEEEecCCC------CceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccc
Q 019100 20 TMILHNAVIVTMDKE------SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (346)
Q Consensus 20 ~~li~n~~i~~~d~~------~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 93 (346)
.+.|+|+++..+... .+.....+|.|++|+|++|++.... +..+.++||++|++|+|||||+|+|+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~----~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~ 80 (410)
T PRK06846 5 HYWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQV----PDATLPTYDANGLLMLPAFREMHIHLDKTY 80 (410)
T ss_pred ceEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCC----CCCCCceEeCCCCEEecCEEeeeecccchh
Confidence 467888887643320 1123567999999999999975321 112357899999999999999999998766
Q ss_pred cccccC-C---CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC-------HHHHHHHHHHhCC
Q 019100 94 AKGIAD-D---VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-------VSEMAKAVELLGL 162 (346)
Q Consensus 94 ~~g~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-------~~~~~~~~~~~g~ 162 (346)
.++... . ..+.+|+....++.... ..+....+...+..++..|+|+++++.... .+.+.+...+...
T Consensus 81 ~~~~~~~~~~~~g~~~~l~~~~~~~~~~--~~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~~ 158 (410)
T PRK06846 81 YGGPWKACRPAKTIQDRIELEQKELPEL--LPTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYKD 158 (410)
T ss_pred hccchhhcCCcccHHHHHhhhhhhHHHh--HHHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhhC
Confidence 555321 1 22344543211111000 011122222345566777999988765311 1233333334222
Q ss_pred eEEEecccccCCCCCCcccc-cCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEE
Q 019100 163 RACLVQSTMDCGEGLPASWA-VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 241 (346)
Q Consensus 163 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 241 (346)
. +...+... +.... .... .+++++....+.. +..++.|......+++.+++++++|+++|+++++
T Consensus 159 ~--v~~~~~a~----~~~g~~~~~~-------~~lL~~al~~Ga~-~i~gl~p~~~~~~~~~~l~~~~~lA~~~g~~v~~ 224 (410)
T PRK06846 159 G--FTYEIVAF----PQHGLLRSNS-------EPLMREAMKMGAH-LVGGVDPASVDGAIEKSLDTMFQIAVDFNKGVDI 224 (410)
T ss_pred c--ceEEEEec----cCcccCCccH-------HHHHHHHHHcCCC-EEeCCCCccCCcCHHHHHHHHHHHHHHhCCCcEE
Confidence 2 11111111 11110 0111 1223333333323 3334566666788899999999999999999999
Q ss_pred EecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccC---ChhhH----HHHHhcCCeEEEChhhhccc-ccc
Q 019100 242 HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV---NHTEI----GLLSRAGVKVSHCPASAMRM-LGF 313 (346)
Q Consensus 242 H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~---~~~~i----~~l~~~g~~v~~~p~~~~~l-~~~ 313 (346)
|+.+...+.....+. .++++++.|+++ ++.+.|+.++ +++++ +++++.|+.++.|+. + .+.
T Consensus 225 Hv~e~~~~~~~~~~~------~~~~~~~~gl~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~~~~----~~~g~ 293 (410)
T PRK06846 225 HLHDTGPLGVATIKY------LVETTEEAQWKG-KVTISHAFALGDLNEEEVEELAERLAAQGISITSTVP----IGRLH 293 (410)
T ss_pred EECCCCChhHHHHHH------HHHHHHHhCCCC-CEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEEeCC----CCCCC
Confidence 999877544433332 688888999877 8899999975 66664 479999999887542 3 578
Q ss_pred ccHHHHHHcCCcEEEcCCCC----CCCCCCCCCCC
Q 019100 314 APIKEMLHADICVSLGTDGA----PSNNRMSIGPF 344 (346)
Q Consensus 314 ~~~~~~~~~Gv~v~~GTD~~----~~~~~~~~~~~ 344 (346)
+|+++|+++|+++++|||++ .++++.||+++
T Consensus 294 ~p~~~l~~~Gv~v~lGtD~~~~~~~p~~~~d~~~~ 328 (410)
T PRK06846 294 MPIPLLHDKGVKVSLGTDSVIDHWSPFGTGDMLEK 328 (410)
T ss_pred CCHHHHHhCCCeEEEecCCCCCCCcCCCCCCHHHH
Confidence 99999999999999999986 34556788765
No 37
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=99.95 E-value=3.8e-26 Score=214.63 Aligned_cols=280 Identities=20% Similarity=0.242 Sum_probs=176.0
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|++.++ + .+++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+.....
T Consensus 1 lli~~~~v~~~~~---~-~~~~i~I~~g~I~~ig~~~~~-----~~~~~viD~~g~~vlPGlID~H~H~~~~~~------ 65 (447)
T cd01314 1 LIIKNGTIVTADG---S-FKADILIEDGKIVAIGPNLEA-----PGGVEVIDATGKYVLPGGIDPHTHLELPFM------ 65 (447)
T ss_pred CEEECCEEECCCC---c-eeeeEEEECCEEEEeeCCCCC-----CCCceEEECCCCEEecCEEecccccccccc------
Confidence 4799999998542 2 568999999999999875321 123589999999999999999999965210
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCCH-HHHHHHHHHhCCeEEEecccccCCCCCCc
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-SEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 179 (346)
...++++.+..+ +.++..||||+.+++.... ....+.......+. .....++.+....
T Consensus 66 ---------------~~~~~e~~~~~~----~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~- 124 (447)
T cd01314 66 ---------------GTVTADDFESGT----RAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKA-DGKSVIDYGFHMI- 124 (447)
T ss_pred ---------------CccCcchHHHHH----HHHHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHh-cCCCcccEEEEEe-
Confidence 012344444433 3456799999999863221 11112211111110 0111222111000
Q ss_pred ccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhc--
Q 019100 180 SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR-- 257 (346)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~-- 257 (346)
......+.+.+..++++ .+...++.+++++..+.++.+.+.++++.|++++.++++|+ |+....+...+++
T Consensus 125 --~~~~~~~~~~~~~~l~~----~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~-E~~~~~~~~~~~~~~ 197 (447)
T cd01314 125 --ITDWTDSVIEELPELVK----KGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHA-ENGDVIAELQKKLLA 197 (447)
T ss_pred --ecCCChHHHHHHHHHHH----cCCCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEc-CCHHHHHHHHHHHHH
Confidence 00011233344444433 23445787788887788899999999999999999999996 7776666555433
Q ss_pred -CCCC-------CHH--------HHHHHcCCCCCCeeEEEeccCCh-hhHHHHHhcCCeE--EEChhhhccc--------
Q 019100 258 -KVDH-------GTV--------TFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVKV--SHCPASAMRM-------- 310 (346)
Q Consensus 258 -g~~~-------~~~--------~~l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g~~v--~~~p~~~~~l-------- 310 (346)
|... ++. +.++..+.++.++++.|+..... +++..+++.|+.+ .+||.+....
T Consensus 198 ~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~ 277 (447)
T cd01314 198 QGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDW 277 (447)
T ss_pred cCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhcccc
Confidence 4321 111 11344556778888888875543 3588888888765 5899763211
Q ss_pred -cc-----ccc---------HHHHHHcCCcEEEcCCCCCCCCCCCCCC
Q 019100 311 -LG-----FAP---------IKEMLHADICVSLGTDGAPSNNRMSIGP 343 (346)
Q Consensus 311 -~~-----~~~---------~~~~~~~Gv~v~~GTD~~~~~~~~~~~~ 343 (346)
.+ .+| +.+++++|+.+++|||+.|++...+++.
T Consensus 278 ~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~~~~k~~~ 325 (447)
T cd01314 278 FEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARG 325 (447)
T ss_pred ccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCCHHHhhcc
Confidence 01 134 4599999999999999999887777653
No 38
>PLN02942 dihydropyrimidinase
Probab=99.94 E-value=4.1e-25 Score=208.53 Aligned_cols=279 Identities=18% Similarity=0.224 Sum_probs=179.2
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
+.+++|+|++|++.+. ...++|+|+||+|++|++..+. ....++||++|++|+|||||+|+|+....+
T Consensus 4 ~~~lli~~~~v~~~~~----~~~~~i~I~~g~I~~i~~~~~~-----~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~--- 71 (486)
T PLN02942 4 STKILIKGGTVVNAHH----QELADVYVEDGIIVAVAPNLKV-----PDDVRVIDATGKFVMPGGIDPHTHLAMPFM--- 71 (486)
T ss_pred CCcEEEECcEEEcCCC----CeEeEEEEECCEEEEEcCCCCC-----CCCCeEEECCCCEEecCEeeeeeccCcccC---
Confidence 5678999999998542 1457999999999999875421 124689999999999999999999976321
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC---CHHHHHHHHHHhCCeEEEecccccCC
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELLGLRACLVQSTMDCG 174 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~g 174 (346)
...+.++++..+ +.++..||||+.|+... .....++.......+. .++++
T Consensus 72 ------------------~~~~~ed~~s~s----~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~ 124 (486)
T PLN02942 72 ------------------GTETIDDFFSGQ----AAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKS-----CMDYG 124 (486)
T ss_pred ------------------CCcccchHHHHH----HHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhc-----CCCEE
Confidence 011234444433 45789999999998522 1122222222211121 11111
Q ss_pred CCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHH
Q 019100 175 EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (346)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~ 254 (346)
....... .....+.+..++.+.+ +...+++++++++...++++.+.+.++.++++|.++++| .|+........
T Consensus 125 ~~~~~~~---~~~~~~~e~~~l~~~~---gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H-aE~~~~~~~~~ 197 (486)
T PLN02942 125 FHMAITK---WDDTVSRDMETLVKEK---GINSFKFFMAYKGSLMVTDELLLEGFKRCKSLGALAMVH-AENGDAVFEGQ 197 (486)
T ss_pred EEEEecC---CcHhHHHHHHHHHHhC---CCceEEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEE-cCCHHHHHHHH
Confidence 1000000 0011223334443333 223367777776666778999999999999999999999 57765554433
Q ss_pred Hh---cCCC-------CCH-------HHH-HHHcCCCCCCeeEEEeccCCh-hhHHHHHhcCCeEEEChhhh-cc-----
Q 019100 255 DT---RKVD-------HGT-------VTF-LDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVKVSHCPASA-MR----- 309 (346)
Q Consensus 255 ~~---~g~~-------~~~-------~~~-l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g~~v~~~p~~~-~~----- 309 (346)
+. .|.. .++ ++. +...+.++.++++.|+++.+. +++.++++.|+.|+.+|... +.
T Consensus 198 ~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~ 277 (486)
T PLN02942 198 KRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSK 277 (486)
T ss_pred HHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEECchhheeCHHH
Confidence 22 2321 012 222 234577788999999999998 88999999998888777531 11
Q ss_pred -------c-cc---cccH---------HHHHHcCCcEEEcCCCCCCCCCCCCC
Q 019100 310 -------M-LG---FAPI---------KEMLHADICVSLGTDGAPSNNRMSIG 342 (346)
Q Consensus 310 -------l-~~---~~~~---------~~~~~~Gv~v~~GTD~~~~~~~~~~~ 342 (346)
+ .+ .+|+ .++++.|+.+++|||+.|+++..+++
T Consensus 278 ~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~~~~~k~~ 330 (486)
T PLN02942 278 LWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPFNSTQKAF 330 (486)
T ss_pred hcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCCChHHhhc
Confidence 1 11 1465 58999999999999999988776664
No 39
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.94 E-value=1.1e-24 Score=203.50 Aligned_cols=289 Identities=18% Similarity=0.153 Sum_probs=172.5
Q ss_pred cceEEEEcCEEEecCCCC--------ceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCC
Q 019100 18 SSTMILHNAVIVTMDKES--------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~--------~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~ 89 (346)
+..++|+|+++-+.-... .-....+|.|+||+|.+|++..+. ..+.++||++|++|+|||||+|+|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~-----~~~~~~id~~g~~v~Pg~id~H~Hl 84 (438)
T PRK07583 10 SGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGA-----PDELPAVDLKGRMVWPCFVDMHTHL 84 (438)
T ss_pred CCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCC-----CCCCceecCCCCcccCCcccceecc
Confidence 346899999864322110 112456999999999999986531 2246799999999999999999999
Q ss_pred ccccccccc--CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc---C----CHHHHHHHHHHh
Q 019100 90 SQQLAKGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---Q----HVSEMAKAVELL 160 (346)
Q Consensus 90 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~---~----~~~~~~~~~~~~ 160 (346)
.....++.. ....+...+...........+.++.......+...++..|+|+++.+.. . ..+.+.+..+..
T Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~ 164 (438)
T PRK07583 85 DKGHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAW 164 (438)
T ss_pred ccceecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHh
Confidence 886544421 1122333321111001112233444444566778899999997665432 1 112222333332
Q ss_pred CCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEE
Q 019100 161 GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 240 (346)
Q Consensus 161 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~ 240 (346)
.-+.-. .++... +......... .+..+.+... .+.+.. . +.. .....+.+.+++++|+++|+++.
T Consensus 165 ~~~~~~--~~v~~~---p~~~~~~~~~---~eL~~~v~~~----~gv~g~-~-~~~-~~~~d~~l~~i~~lA~~~G~~v~ 229 (438)
T PRK07583 165 AGRIAL--QAVSLV---PLDAYLTDAG---ERLADLVAEA----GGLLGG-V-TYM-NPDLDAQLDRLFRLARERGLDLD 229 (438)
T ss_pred hccCeE--EEEEec---ChhhccCchH---HHHHHHHHHc----CCEEeC-C-CCC-CCCHHHHHHHHHHHHHHhCCCcE
Confidence 111100 011111 1111110111 1122222221 122221 1 111 11256789999999999999999
Q ss_pred EEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC-------hhhHHHHHhcCCeEEEChhhhcccc--
Q 019100 241 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-------HTEIGLLSRAGVKVSHCPASAMRML-- 311 (346)
Q Consensus 241 ~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~-------~~~i~~l~~~g~~v~~~p~~~~~l~-- 311 (346)
+|+.+........... ..+.+.+.|+.+ ++++.|+..++ +++++++++.|+.+++||.++.++.
T Consensus 230 vH~~E~~~~~~~~l~~------~~~~~~~~G~~~-~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~~P~~~~~l~~~ 302 (438)
T PRK07583 230 LHVDETGDPASRTLKA------VAEAALRNGFEG-KVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVSLPMCNLYLQDR 302 (438)
T ss_pred EeECCCCCchHHHHHH------HHHHHHHhCCCC-CEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhcCC
Confidence 9998765433222221 345556777755 68889999987 3679999999999999999886541
Q ss_pred ---------ccccHHHHHHcCCcEEEcCCCC
Q 019100 312 ---------GFAPIKEMLHADICVSLGTDGA 333 (346)
Q Consensus 312 ---------~~~~~~~~~~~Gv~v~~GTD~~ 333 (346)
+..|+++|+++||+|++|||+.
T Consensus 303 ~~~~~p~~~~~~~v~~l~~aGV~valGtD~~ 333 (438)
T PRK07583 303 QPGRTPRWRGVTLVHELKAAGIPVAVASDNC 333 (438)
T ss_pred CcCCCCCCCCcchHHHHHHCCCeEEEEeCCC
Confidence 3468999999999999999985
No 40
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=99.93 E-value=1.1e-24 Score=205.34 Aligned_cols=271 Identities=17% Similarity=0.226 Sum_probs=169.4
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|+++++ . ..++|+|+||+|++|++..+. ....++||++|++|+|||||+|+|+....
T Consensus 1 ~li~n~~vv~~~~---~-~~~~V~I~dg~I~~Ig~~~~~-----~~~~~vIDa~G~~vlPGlID~H~H~~~~~------- 64 (454)
T TIGR02033 1 KLIRGGTVVNADD---V-FQADVLIEGGKIVAVGRNLSP-----PDAVEEIDATGKYVMPGGIDVHTHLEMPF------- 64 (454)
T ss_pred CEEECcEEEcCCC---c-eEEEEEEECCEEEEecCCCCC-----CCCCcEEECCCCEEecCEecceeccCccc-------
Confidence 4799999998653 2 568999999999999875321 12358999999999999999999996521
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC----HHHHHHHHHHhCCeEEEecccccCCCC
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAVELLGLRACLVQSTMDCGEG 176 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~g~~ 176 (346)
....++++.+..+ +.++..||||+.+++... ....++........ ...++.+..
T Consensus 65 --------------~~~~~~e~~~~~s----~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 122 (454)
T TIGR02033 65 --------------GGTVTADDFFTGT----KAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEG----KSVIDYGFH 122 (454)
T ss_pred --------------CCCCCcchHHHHH----HHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhcc----CceEEEEEE
Confidence 0112344444443 346689999999986322 22222222221111 111111110
Q ss_pred CCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh
Q 019100 177 LPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256 (346)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 256 (346)
..... ...+.+++..+.+. ..+...++++++++..+.++++.+.++++.|++++.++++|+ |+..........
T Consensus 123 ~~~~~---~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~-E~~~~~~~~~~~ 195 (454)
T TIGR02033 123 MMITH---WNDEVLEEHIPELV---EEGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQVHA-ENGDVIAELQAR 195 (454)
T ss_pred ecccC---CcHHHHHHHHHHHH---hcCCcEEEEEeecCCCCCCCHHHHHHHHHHHHhCCCeEEEEc-CCHHHHHHHHHH
Confidence 00000 01122222222222 223456787778777788999999999999999999999996 776655444333
Q ss_pred c---CCCC-------CHH-------H-HHHHcCCCCCCeeEEEeccC-ChhhHHHHHhcC--CeEEEChhhhc-------
Q 019100 257 R---KVDH-------GTV-------T-FLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAG--VKVSHCPASAM------- 308 (346)
Q Consensus 257 ~---g~~~-------~~~-------~-~l~~~g~l~~~~~~~H~~~~-~~~~i~~l~~~g--~~v~~~p~~~~------- 308 (346)
+ |... ++. + .+...+.++.+.++.|.+.. +.++++.+++.| +.+.+||.+..
T Consensus 196 ~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~ 275 (454)
T TIGR02033 196 LLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVSTASAVDEIAEAREKGQPVYGETCPQYLLLDDTIYD 275 (454)
T ss_pred HHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCchheeecHHHhc
Confidence 2 3210 111 1 13334566778778887763 346788889999 45669998642
Q ss_pred ----cc-ccc--cc---------HHHHHHcCCcEEEcCCCCCCC
Q 019100 309 ----RM-LGF--AP---------IKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 309 ----~l-~~~--~~---------~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
++ .+. +| +.++++.|+.+++|||+.|++
T Consensus 276 ~~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~ 319 (454)
T TIGR02033 276 KPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFN 319 (454)
T ss_pred CcccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCC
Confidence 22 222 46 559999999999999999876
No 41
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.93 E-value=3.4e-24 Score=196.68 Aligned_cols=263 Identities=14% Similarity=0.172 Sum_probs=167.4
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
+.+++|+|++|++... ......+|+|++|+|++|++... ....++||++|++|+|||||+|+|+.. ++.
T Consensus 2 ~~~~li~~~~i~~~~~--~~~~~~~i~i~~g~I~~i~~~~~------~~~~~viD~~g~~v~PGliD~H~H~~~---~g~ 70 (379)
T PRK12394 2 KNDILITNGHIIDPAR--NINEINNLRIINDIIVDADKYPV------ASETRIIHADGCIVTPGLIDYHAHVFY---DGT 70 (379)
T ss_pred CccEEEECcEEECCCC--CcccccEEEEECCEEEEEcCCCC------CCCCeEEECCCCEEECCEEEeeecCCC---CCc
Confidence 3468999999996432 22356799999999999987432 124589999999999999999999854 110
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC---HHHH---HHHHHHhCCeEEEecccc
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEM---AKAVELLGLRACLVQSTM 171 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~---~~~~---~~~~~~~g~~~~~~~~~~ 171 (346)
. ...+++ ..++..|+||++|++... ...+ .....+.++|.++.....
T Consensus 71 ~-----------------~~~~~~----------~~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~ 123 (379)
T PRK12394 71 E-----------------GGVRPD----------MYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPP 123 (379)
T ss_pred c-----------------cccCHH----------HHHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecc
Confidence 0 011121 127789999999996321 2112 223456678877764433
Q ss_pred cCCCCCCcccccCChHHH-HHHHHHHHHHHcCCCCCC-eEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhh
Q 019100 172 DCGEGLPASWAVRTTDDC-IQSQKELYAKHHHAADGR-IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (346)
Q Consensus 172 ~~g~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 249 (346)
.... ............ .++..++++.+.....+. +.+..+++. ..+++.+.+.+++|+++|+++++|+.++..+
T Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ki~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~ 199 (379)
T PRK12394 124 GQTW--SGYQENYDPDNIDENKIHALFRQYRNVLQGLKLRVQTEDIA--EYGLKPLTETLRIANDLRCPVAVHSTHPVLP 199 (379)
T ss_pred cccc--cCcccccChhHCCHHHHHHHHHHCcCcEEEEEEEEeccccc--ccchHHHHHHHHHHHHcCCCEEEEeCCCCcc
Confidence 2211 000000011111 245566666554332222 222233332 5568899999999999999999999876532
Q ss_pred HHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC-----------hhhHHHHHhcCCeE-EEChhhhccccccccHH
Q 019100 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-----------HTEIGLLSRAGVKV-SHCPASAMRMLGFAPIK 317 (346)
Q Consensus 250 ~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~-----------~~~i~~l~~~g~~v-~~~p~~~~~l~~~~~~~ 317 (346)
.. +..+++.....+.|+.+.+ .+++..+++.|+.+ +.++.++. ......
T Consensus 200 ~~----------------~~~~~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~s~~---~~~~~~ 260 (379)
T PRK12394 200 MK----------------ELVSLLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAANGRSHF---DMNVAR 260 (379)
T ss_pred HH----------------HHHHhcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEecCCcccc---chHHHH
Confidence 21 2334455566778988733 24677789999876 77776653 334567
Q ss_pred HHHHcCC-cEEEcCCCCCCCCCCCC
Q 019100 318 EMLHADI-CVSLGTDGAPSNNRMSI 341 (346)
Q Consensus 318 ~~~~~Gv-~v~~GTD~~~~~~~~~~ 341 (346)
+++++|+ ++++|||+.++++..++
T Consensus 261 ~~l~~G~~~~~lgTD~~~~~~~~~~ 285 (379)
T PRK12394 261 RAIANGFLPDIISSDLSTITKLAWP 285 (379)
T ss_pred HHHHCCCCceEEECCCCCCCcccCc
Confidence 9999995 99999999988766554
No 42
>PRK08323 phenylhydantoinase; Validated
Probab=99.92 E-value=9.7e-24 Score=199.09 Aligned_cols=273 Identities=18% Similarity=0.205 Sum_probs=170.4
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|++.++ + ..++|+|+||+|++|++. .+.++||++|++|+|||||+|+|+.....
T Consensus 2 d~li~n~~v~~~~~---~-~~~~v~I~~g~I~~i~~~---------~~~~viD~~g~~v~PGlID~H~H~~~~~~----- 63 (459)
T PRK08323 2 STLIKNGTVVTADD---T-YKADVLIEDGKIAAIGAN---------LGDEVIDATGKYVMPGGIDPHTHMEMPFG----- 63 (459)
T ss_pred cEEEECCEEEcCCC---c-eEEEEEEECCEEEEEecC---------CCceEEECCCCEEeccEEeeeeccccccC-----
Confidence 57999999997432 2 468999999999999864 13579999999999999999999854100
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC----CHHHHHHHHHHhCCeEEEecccccCCC
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGE 175 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~g~ 175 (346)
....+++.+... +.++..||||+.+++.. ......+........ ....+.+.
T Consensus 64 ----------------~~~~~e~~~~~~----~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~~ 119 (459)
T PRK08323 64 ----------------GTVSSDDFETGT----RAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAG----KAVIDYGF 119 (459)
T ss_pred ----------------CccccCcHHHHH----HHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhcc----CceEEEEE
Confidence 011233333322 34668999999998632 122222222211111 00111110
Q ss_pred CCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHH
Q 019100 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (346)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 255 (346)
.... .....+.+++..++++ .+...+++++++++.+.++.+++.++++.|+++|.++++|+ ++....+...+
T Consensus 120 ~~~~---~~~~~~~~~~~~~~~~----~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~ 191 (459)
T PRK08323 120 HMII---TDWNEVVLDEMPELVE----EGITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVHA-ENGDAIAYLQA 191 (459)
T ss_pred EEEe---cCCcHHHHHHHHHHHH----cCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEc-CChHHHHHHHH
Confidence 0000 0011223334444432 22345777777777778899999999999999999999996 66655544433
Q ss_pred hc---CCC-------CCHHH--------HHHHcCCCCCCeeEEEeccC-ChhhHHHHHhcCCeE--EEChh------hhc
Q 019100 256 TR---KVD-------HGTVT--------FLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKV--SHCPA------SAM 308 (346)
Q Consensus 256 ~~---g~~-------~~~~~--------~l~~~g~l~~~~~~~H~~~~-~~~~i~~l~~~g~~v--~~~p~------~~~ 308 (346)
.+ |.. .++.. .++..+.++.++++.|.... +-++++.+++.|+.+ .+||. ++.
T Consensus 192 ~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~ 271 (459)
T PRK08323 192 KLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHVSCKEALEAIRRARARGQRVFGETCPQYLLLDESEY 271 (459)
T ss_pred HHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEEEcCccceeecHHHh
Confidence 32 321 01222 24455677778888887754 334677788888664 58997 554
Q ss_pred cc-c---cc-----cc---------HHHHHHcCCcEEEcCCCCCCCCCCCCC
Q 019100 309 RM-L---GF-----AP---------IKEMLHADICVSLGTDGAPSNNRMSIG 342 (346)
Q Consensus 309 ~l-~---~~-----~~---------~~~~~~~Gv~v~~GTD~~~~~~~~~~~ 342 (346)
.. . +. +| +.+++++|+.+++|||+.|++++.+++
T Consensus 272 ~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~~~~~~~~ 323 (459)
T PRK08323 272 DGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPFCFEQKKQ 323 (459)
T ss_pred cCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCCChHHhcc
Confidence 32 1 21 33 679999999999999999987665553
No 43
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.92 E-value=6.5e-24 Score=192.90 Aligned_cols=227 Identities=17% Similarity=0.192 Sum_probs=144.4
Q ss_pred CeEEecCCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc
Q 019100 68 DQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (346)
Q Consensus 68 ~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~ 147 (346)
+++||++|++|+|||||+|+|+..... ....+. ...++..........+.++..||||++|++.
T Consensus 1 ~~vID~~g~~v~PGliD~H~Hl~~~~~-------~~~~~~---------~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~ 64 (342)
T cd01299 1 AQVIDLGGKTLMPGLIDAHTHLGSDPG-------DLPLDL---------ALPVEYRTIRATRQARAALRAGFTTVRDAGG 64 (342)
T ss_pred CcEEeCCCCEECCCeeeeeeeccccCC-------Cccccc---------cCCHHHHHHHHHHHHHHHHhCCCcEEEeCCC
Confidence 368999999999999999999855210 100110 1122333334445678899999999999985
Q ss_pred CCHHHHHHHHHHh----CCeEEEeccccc-CCCCCCc------------ccccCChHHHHHHHHHHHHHHcCCCCCCeEE
Q 019100 148 QHVSEMAKAVELL----GLRACLVQSTMD-CGEGLPA------------SWAVRTTDDCIQSQKELYAKHHHAADGRIRI 210 (346)
Q Consensus 148 ~~~~~~~~~~~~~----g~~~~~~~~~~~-~g~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 210 (346)
..... .+..... |.|.+.....+. .+..... .......+ +..+.++++...+.+.+|+
T Consensus 65 ~~~~~-~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~G~~~iK~ 139 (342)
T cd01299 65 ADYGL-LRDAIDAGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVE----EVRAAVREQLRRGADQIKI 139 (342)
T ss_pred cchHH-HHHHHHcCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHH----HHHHHHHHHHHhCCCEEEE
Confidence 43222 2222332 333333322221 1110000 01111222 3344455555556778888
Q ss_pred EEeec--------ccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEe
Q 019100 211 WFGIR--------QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHT 282 (346)
Q Consensus 211 ~~~~~--------~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~ 282 (346)
++... +...++++.+.++++.|+++|+++++|+.+... ++...+.|. . .++|+
T Consensus 140 ~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~---------------i~~~l~~G~---~-~i~H~ 200 (342)
T cd01299 140 MATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEA---------------IRRAIRAGV---D-TIEHG 200 (342)
T ss_pred eccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHH---------------HHHHHHcCC---C-EEeec
Confidence 76431 113578999999999999999999999975431 222223333 3 57999
Q ss_pred ccCChhhHHHHHhcCCeEEEChhhhcc---------------------c-cccccHHHHHHcCCcEEEcCCCCC
Q 019100 283 VWVNHTEIGLLSRAGVKVSHCPASAMR---------------------M-LGFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 283 ~~~~~~~i~~l~~~g~~v~~~p~~~~~---------------------l-~~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
..+++++++++++.|+.+++||.++.. + .+..+++.++++||+|++|||++.
T Consensus 201 ~~~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~~~ 274 (342)
T cd01299 201 FLIDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDAGF 274 (342)
T ss_pred CCCCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 999999999999999999999986532 1 234688999999999999999874
No 44
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.91 E-value=2e-22 Score=190.96 Aligned_cols=112 Identities=20% Similarity=0.198 Sum_probs=89.8
Q ss_pred cccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhc
Q 019100 217 IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 296 (346)
Q Consensus 217 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~ 296 (346)
...++++.+.++++.|+++|+++++|+.++.. ...+.+. ......+.|.++.++.++|+..+++++++++++.
T Consensus 289 ~~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~-i~~~l~~------~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~ 361 (479)
T cd01300 289 LLLISPEELEELVRAADEAGLQVAIHAIGDRA-VDTVLDA------LEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKL 361 (479)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEEEecHHH-HHHHHHH------HHHHHHhcCCCCCCceeeecccCCHHHHHHHHHc
Confidence 34668999999999999999999999986543 4433331 2233445677788899999999999999999999
Q ss_pred CCeEEEChhhhcc---------c-----cccccHHHHHHcCCcEEEcCCCCCC
Q 019100 297 GVKVSHCPASAMR---------M-----LGFAPIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 297 g~~v~~~p~~~~~---------l-----~~~~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
|+.+++||.+... + ....|++.++++|+++++|||++++
T Consensus 362 gv~~~~~P~~~~~~~~~~~~~~lg~~~~~~~~p~~~~~~~Gv~v~lGSD~~~~ 414 (479)
T cd01300 362 GVIASVQPNHLYSDGDAAEDRRLGEERAKRSYPFRSLLDAGVPVALGSDAPVA 414 (479)
T ss_pred CCceEeCcccccCchHHHHHhcccHHHHhcCchHHHHHHCCCeeeccCCCCCC
Confidence 9999999975421 1 2467999999999999999999854
No 45
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=3.9e-22 Score=181.85 Aligned_cols=287 Identities=16% Similarity=0.217 Sum_probs=168.8
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccCh-hhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSA-DILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~-~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
.+++.+++.++. .++++++.|+|+||||++|++.. +. +.+.++||++|+||+|||||+|+|+.....++..
T Consensus 11 ~~~~~~~~~~~~---~~~i~~~~v~i~~GkI~~vg~~~~~~-----~~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~~ 82 (406)
T COG1228 11 MLATLAGRGLPG---LGIIEDGAVLIEDGKIVAVGPEEIDI-----PAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGE 82 (406)
T ss_pred hheeeccccCCC---cceeecceEEEECCEEEEecCcccCC-----CCCCeEEeCCCCEEccceeeccccccccCCccch
Confidence 467888888763 24556799999999999999873 32 3357999999999999999999999875444422
Q ss_pred C-----CCChhHhhh--hhccccccCCC---chHHHHHHHHHHHHHHhcCceEeeecCcCCHH-----HHHHHHHHhCC-
Q 019100 99 D-----DVDLMTWLH--DRIWPYESNMT---EEDSYISTLLCGIELIHSGVTCFAEAGGQHVS-----EMAKAVELLGL- 162 (346)
Q Consensus 99 ~-----~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-----~~~~~~~~~g~- 162 (346)
. +.+....+. ..+++.....+ ...........+..+++.|+|+...+...... ...+.......
T Consensus 83 ~~~~~~~~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~~~ 162 (406)
T COG1228 83 FELREAGASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLKES 162 (406)
T ss_pred hhhcccCccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhcccc
Confidence 1 111111111 11111111111 11122234456678889999987765421111 11111111110
Q ss_pred -eEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEE
Q 019100 163 -RACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 241 (346)
Q Consensus 163 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 241 (346)
......... ...+.+.. ..............++..... .++.+..-..+....+++++++++++.|++.|+++.+
T Consensus 163 ~~~~~~~t~~-~~~~~~~~-~~~~r~~~~~g~~~~i~~~a~--~~l~~~~d~~~~~~~fs~~e~~~~l~~a~~~g~~v~~ 238 (406)
T COG1228 163 RPVAVGSTPL-AAHGVPEE-RKATREAYVAGARLLIKIVAT--GGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIPVKA 238 (406)
T ss_pred ccccccCccc-cccCCccc-ccchHHHHHHHHHHHHHHHHh--ccccchhhccccccccCHHHHHHHHHHHHHCCCceEE
Confidence 000000000 00011221 111222222333332333222 1222221123445677899999999999999999999
Q ss_pred EecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHh--cCC-eEEEChhhhccc--cccccH
Q 019100 242 HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR--AGV-KVSHCPASAMRM--LGFAPI 316 (346)
Q Consensus 242 H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~--~g~-~v~~~p~~~~~l--~~~~~~ 316 (346)
|+.+... . +...+.+.. .+.|+.+++++.++.|++ .|+ ..++.|.....+ ....++
T Consensus 239 HA~~~~g-~--------------~~A~~~g~~----s~~H~~~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~~~~ 299 (406)
T COG1228 239 HAHGADG-I--------------KLAIRLGAK----SAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRELDYKPA 299 (406)
T ss_pred Eecccch-H--------------HHHHHhCcc----eehhhhhcCHhHHHHHhhccCCCccccccchhhhhhhcccchhH
Confidence 9987652 2 222244443 457999999999999999 776 345666655444 457889
Q ss_pred HHHHHcCCcEEEcCCCCCCCC
Q 019100 317 KEMLHADICVSLGTDGAPSNN 337 (346)
Q Consensus 317 ~~~~~~Gv~v~~GTD~~~~~~ 337 (346)
+.|+++||+|++|||.++.+.
T Consensus 300 ~~l~~~GV~vai~TD~~~~~~ 320 (406)
T COG1228 300 RKLIDAGVKVAIGTDHNPGTS 320 (406)
T ss_pred HHHHHCCCEEEEEcCCCCCch
Confidence 999999999999999998663
No 46
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.89 E-value=1.7e-21 Score=179.93 Aligned_cols=263 Identities=21% Similarity=0.248 Sum_probs=162.6
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
.++|+|++|++.+. ...++|+|+||+|++|++..+... ..+..++||++|++|+|||||+|+|+.... .
T Consensus 2 ~~~i~~~~v~~~~~----~~~~~i~i~~g~I~~v~~~~~~~~--~~~~~~~id~~g~~v~PG~id~H~H~~~~~----~- 70 (388)
T PRK10657 2 FTLLKNAHVYAPED----LGKKDILIAGGKIIAIADNINIPD--IVPDIEVIDASGKILVPGFIDQHVHIIGGG----G- 70 (388)
T ss_pred eEEEEccEEECCCC----CcceEEEEECCEEEEecCCccccc--cCCCCeEEECCCCEEcccceeeeeCcccCC----C-
Confidence 37899999997642 256899999999999987543211 112458999999999999999999986311 0
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc-----CCH---HHHHHHHHHhCCeEEEecccc
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHV---SEMAKAVELLGLRACLVQSTM 171 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~-----~~~---~~~~~~~~~~g~~~~~~~~~~ 171 (346)
+ + .| ...+++ ..+.+++..|+||+.++++ ... ....+.+...|++.+.....+
T Consensus 71 ~-~--~~---------~~~t~~-------~~~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~ 131 (388)
T PRK10657 71 E-G--GF---------STRTPE-------VQLSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGSY 131 (388)
T ss_pred C-c--cc---------ccCCHH-------HHHHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecCC
Confidence 0 0 00 011222 3456788999999999873 122 233455568899998554333
Q ss_pred cCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCC------eEEEEecC
Q 019100 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT------GIHMHVAE 245 (346)
Q Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~~~ 245 (346)
+. +..+ ..+.+.+...+.+.+.+ .+ +..+.++.....+++.+.++.+.++..+. ++++|+.+
T Consensus 132 ~~----~~~~----~~~~~~~~~~~~~~~~g--~g--~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~ 199 (388)
T PRK10657 132 HV----PVRT----ITGSIRKDIVLIDKVIG--VG--EIAISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGD 199 (388)
T ss_pred CC----Cchh----hhcchhhceehhhhhhC--cc--eeeeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 21 1110 01111111122233322 11 33456666667789999988888886555 89999986
Q ss_pred ChhhHHHHHHhcCCCCCHH-HHHHHcCCCCCCeeEEEecc---CChhhHHHHHhcCCeEEEC-hhhhccc-c---ccccH
Q 019100 246 IPYENQVVMDTRKVDHGTV-TFLDKIEFLQNNLLSAHTVW---VNHTEIGLLSRAGVKVSHC-PASAMRM-L---GFAPI 316 (346)
Q Consensus 246 ~~~~~~~~~~~~g~~~~~~-~~l~~~g~l~~~~~~~H~~~---~~~~~i~~l~~~g~~v~~~-p~~~~~l-~---~~~~~ 316 (346)
+....+ .+ +++++.|+...+++..|... ..++.+++ .++|..+.+. +....+. . ....+
T Consensus 200 ~~~~l~-----------~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~-~~~G~~~~v~~~~~~~~~~~~~~~~~~l 267 (388)
T PRK10657 200 GKKGLQ-----------PLFELLENTDIPISQFLPTHVNRNEPLFEQALEF-AKKGGVIDLTTSDPDFLGEGEVAPAEAL 267 (388)
T ss_pred chHHHH-----------HHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHH-HHcCCeEEEecCCCcccccCccCHHHHH
Confidence 554333 33 56678898877777777665 33444554 4456665333 3222222 2 23568
Q ss_pred HHHHHcCC---cEEEcCCCCCCC
Q 019100 317 KEMLHADI---CVSLGTDGAPSN 336 (346)
Q Consensus 317 ~~~~~~Gv---~v~~GTD~~~~~ 336 (346)
.++++.|+ +++++||+..++
T Consensus 268 ~~~~~~G~~~d~v~l~tD~~~~~ 290 (388)
T PRK10657 268 KRALEAGVPLSRVTLSSDGNGSL 290 (388)
T ss_pred HHHHHcCCChhheEEECCCCCCC
Confidence 89999999 899999975444
No 47
>PRK09357 pyrC dihydroorotase; Validated
Probab=99.88 E-value=3.5e-21 Score=179.70 Aligned_cols=265 Identities=17% Similarity=0.197 Sum_probs=159.5
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|++.+ ..+.+++|+|+||+|.+|++... .+..++||++|++|+|||||+|+|+....
T Consensus 2 ~~~i~~~~v~~~~---~~~~~~~I~I~dg~I~~i~~~~~------~~~~~~iD~~g~~v~PG~ID~H~H~~~~~------ 66 (423)
T PRK09357 2 MILIKNGRVIDPK---GLDEVADVLIDDGKIAAIGENIE------AEGAEVIDATGLVVAPGLVDLHVHLREPG------ 66 (423)
T ss_pred cEEEEeEEEECCC---CCcceeeEEEECCEEEEeeCCCC------CCCCeEEECCCCEEeCCEEecccccCCCC------
Confidence 3799999999643 34567899999999999986421 12458999999999999999999974410
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC--------CHHHHHHHHHHhCCeEEEecccc
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLVQSTM 171 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~--------~~~~~~~~~~~~g~~~~~~~~~~ 171 (346)
..+.++....+ +.++..|||++.+++.. ..+...+.....+.+.+.....+
T Consensus 67 -----------------~~~~e~~~~~~----~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (423)
T PRK09357 67 -----------------QEDKETIETGS----RAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAI 125 (423)
T ss_pred -----------------ccccccHHHHH----HHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEE
Confidence 11223333333 33568999999998732 12333444444555544443333
Q ss_pred cCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHH
Q 019100 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (346)
Q Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 251 (346)
..+ ... ..+.+..++.+ .+ + ..+.+++.+..+++.+.++++.|+++|.++++|+.++.....
T Consensus 126 ~~~--~~~--------~~~~~~~~l~~------~g-v-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~ 187 (423)
T PRK09357 126 TKG--LAG--------EELTEFGALKE------AG-V-VAFSDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEG 187 (423)
T ss_pred EeC--CCC--------ccHHHHHHHHh------CC-c-EEEECCCcccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhc
Confidence 221 110 11222222222 12 1 234566666778899999999999999999999977543221
Q ss_pred HH------HHhcCCCCC--------HHHHHHHcCCCCCCeeEEEeccCChhh-HHHHHhcCCe--EEEChhh--------
Q 019100 252 VV------MDTRKVDHG--------TVTFLDKIEFLQNNLLSAHTVWVNHTE-IGLLSRAGVK--VSHCPAS-------- 306 (346)
Q Consensus 252 ~~------~~~~g~~~~--------~~~~l~~~g~l~~~~~~~H~~~~~~~~-i~~l~~~g~~--v~~~p~~-------- 306 (346)
.+ ...++.... ..+.+.-....+.++.+.|......-+ +...++.|+. ..+||..
T Consensus 188 ~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~ 267 (423)
T PRK09357 188 GVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTDEDL 267 (423)
T ss_pred ccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEechHHheEcHHHH
Confidence 11 111222111 111121222234477778877655544 3444556644 4588832
Q ss_pred -----hccc-------cccccHHHHHHcCCcEEEcCCCCCCCCC
Q 019100 307 -----AMRM-------LGFAPIKEMLHADICVSLGTDGAPSNNR 338 (346)
Q Consensus 307 -----~~~l-------~~~~~~~~~~~~Gv~v~~GTD~~~~~~~ 338 (346)
...+ .+..++.+++++|+.+++|||+.|.+..
T Consensus 268 ~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~ 311 (423)
T PRK09357 268 LTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHARE 311 (423)
T ss_pred hCcCCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChH
Confidence 1111 1245788999999999999999986644
No 48
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=99.88 E-value=9.9e-21 Score=175.78 Aligned_cols=260 Identities=18% Similarity=0.159 Sum_probs=154.1
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|+++.+ ......+|.|+||+|++|++..+ ..+.++||++|++|+|||||+|+|+....+.
T Consensus 1 d~~i~n~~v~~~~~--~~~~~~~i~I~~g~I~~i~~~~~------~~~~~~iD~~G~~v~PG~iD~H~H~~~~~~~---- 68 (415)
T cd01297 1 DLVIRNGTVVDGTG--APPFTADVGIRDGRIAAIGPILS------TSAREVIDAAGLVVAPGFIDVHTHYDGQVFW---- 68 (415)
T ss_pred CEEEECCEEECCCC--CccccceEEEECCEEEEEecCCC------CCCCeEEECCCCEEccCEeeeeecCCccccc----
Confidence 37899999997543 23356899999999999986532 1246899999999999999999998652100
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-------------------------------
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------------------------------- 148 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~------------------------------- 148 (346)
+. ..+.++..|+||+.++...
T Consensus 69 ---------------------~~-------~~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (415)
T cd01297 69 ---------------------DP-------DLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWG 120 (415)
T ss_pred ---------------------Cc-------chhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCC
Confidence 00 0134567899999875320
Q ss_pred --CHHHHHHHHHHh--CCeEEE--ecccccC-CCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCC
Q 019100 149 --HVSEMAKAVELL--GLRACL--VQSTMDC-GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNAT 221 (346)
Q Consensus 149 --~~~~~~~~~~~~--g~~~~~--~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (346)
......+.+... .+.... ....+.. ..+... .....+.+.+..+++++....+.--++.++........+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~~g~~~---~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~ 197 (415)
T cd01297 121 WATFAEYLDALEARPPAVNVAALVGHAALRRAVMGLDA---REATEEELAKMRELLREALEAGALGISTGLAYAPRLYAG 197 (415)
T ss_pred CCCHHHHHHHHHhcCCCcCeeeccCcHHHHHHHhCcCC---CCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCC
Confidence 011122222111 122110 0000000 000000 011223455556665554333221222222111112568
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCh-hhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh----------hhH
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIP-YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH----------TEI 290 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~----------~~i 290 (346)
.+++.+++++++++|.++.+|+.+.. .+.+.+ .+.++.....+.+..+.|++.... +.+
T Consensus 198 ~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av----------~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i 267 (415)
T cd01297 198 TAELVALARVAARYGGVYQTHVRYEGDSILEAL----------DELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALI 267 (415)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECcccccHHHHH----------HHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHH
Confidence 99999999999999999999997543 222222 233333344466899999998766 556
Q ss_pred HHHHhcCCeE--EEChhhhccccccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 291 GLLSRAGVKV--SHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 291 ~~l~~~g~~v--~~~p~~~~~l~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
+++++.|+.+ .+||... ....+++++++. +.+.+|||++|.+
T Consensus 268 ~~a~~~G~~v~~e~~p~~~---~~~~~~~~l~~~-~~~~i~SDh~~~~ 311 (415)
T cd01297 268 EAARAEGLQVTADVYPYGA---GSEDDVRRIMAH-PVVMGGSDGGALG 311 (415)
T ss_pred HHHHHhCCcEEEEeCCCCC---CcHHHHHHHHcC-CCceeeeCCCcCC
Confidence 7777766555 4677221 125788999988 9999999998743
No 49
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.87 E-value=1.6e-20 Score=171.12 Aligned_cols=266 Identities=19% Similarity=0.225 Sum_probs=163.2
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|++++. +...+|+|+||||++|++..+....++ ...+++|++|++|+|||||+|+|+.... ..+
T Consensus 2 ~li~n~~v~~~~~----~~~~dvlI~~gkI~~Ig~~~~~~~~~~-~~~~i~d~~G~~v~PGlID~HvH~~~gg----~~~ 72 (389)
T TIGR01975 2 TLLKGAEVYAPEY----IGKKDILIANDKIIAIADEIPSTKDFV-PNCVVVGLEGMIAVPGFIDQHVHIIGGG----GEG 72 (389)
T ss_pred EEEECcEEEcCCc----CcceeEEEECCEEEEEcCCccccccCC-CCeEEECCCCCEEccCEeehhhcccccc----ccC
Confidence 5899999998642 256799999999999998765321111 1223556699999999999999987621 111
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc-----CC---HHHHHHHHHHhCCeEEEeccccc
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QH---VSEMAKAVELLGLRACLVQSTMD 172 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~-----~~---~~~~~~~~~~~g~~~~~~~~~~~ 172 (346)
.+ ...+++ ..+.+++++|+||++++++ .. .....+++...|+|.......++
T Consensus 73 ~~-------------~~~~~e-------~~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~ 132 (389)
T TIGR01975 73 GP-------------TTRTPE-------LTLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYH 132 (389)
T ss_pred CC-------------ccCCHH-------HHHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEccccc
Confidence 11 012233 1367899999999999863 22 33567788899999988765543
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC----Ce--EEEEecCC
Q 019100 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK----TG--IHMHVAEI 246 (346)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g----~~--v~~H~~~~ 246 (346)
. +....... +.....+++...+ .-++.++.+-....+.+.|+.+.+.++..| .+ +++|+...
T Consensus 133 ~----p~~t~t~~----~~~d~~~~d~iiG----~~~ia~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~ 200 (389)
T TIGR01975 133 V----PSRTITGS----VESDLLLIDKVIG----VGEIAISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDS 200 (389)
T ss_pred C----CCcccccc----hhhheeeehhhcc----cceEEEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc
Confidence 2 11111110 1111111222211 112445555556678899999999999998 89 99999887
Q ss_pred hhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC------hhhHHHHHhcCCeEEEChhhhccc--cccc---c
Q 019100 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN------HTEIGLLSRAGVKVSHCPASAMRM--LGFA---P 315 (346)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~------~~~i~~l~~~g~~v~~~p~~~~~l--~~~~---~ 315 (346)
+...+.+. +.+++-.+.-.. -|..++. ++.++.+++-|..=+..|.+...+ ...+ .
T Consensus 201 ~~~l~~l~----------~~~~~~di~~~~---f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l~~~~~~~~~~ 267 (389)
T TIGR01975 201 KRALQPIY----------ELVENTDVPITQ---FLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFRKEGEVAPAEG 267 (389)
T ss_pred hhhHHHHH----------HHHHhcCCChhh---eecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccchhccccChHHH
Confidence 76655433 344444443211 2233333 455666666555444455443222 1222 5
Q ss_pred HHHHHHcCCc---EEEcCCCCCCCCCCC
Q 019100 316 IKEMLHADIC---VSLGTDGAPSNNRMS 340 (346)
Q Consensus 316 ~~~~~~~Gv~---v~~GTD~~~~~~~~~ 340 (346)
++.++++|++ +++|||...+.+.+|
T Consensus 268 ~~~~~~~Gv~~~~i~isSD~~gs~p~~~ 295 (389)
T TIGR01975 268 IKKALEAGVPLEKVTFSSDGNGSQPFFD 295 (389)
T ss_pred HHHHHHcCCCcceEEEEeCCCCCCCccc
Confidence 6999999997 499999864444443
No 50
>PRK06886 hypothetical protein; Validated
Probab=99.86 E-value=3.4e-20 Score=164.53 Aligned_cols=240 Identities=17% Similarity=0.139 Sum_probs=156.1
Q ss_pred cccccccCCccccccccc-----CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc-------C
Q 019100 81 GFVNTHVHTSQQLAKGIA-----DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-------Q 148 (346)
Q Consensus 81 GfID~H~H~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~-------~ 148 (346)
||||.|+|++.+...+.. ...++.+.+. .+......++.++.+......+..++..|+|.++.+.. .
T Consensus 21 gfv~~H~HlDk~~~~~~~~~~~~~~g~l~e~i~-~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~ 99 (329)
T PRK06886 21 GWVNAHAHADRAFTMTPEKIAIYHYANLQQKWD-LVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDR 99 (329)
T ss_pred CCccccccccccccCCCccccccCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCcccc
Confidence 899999999986654421 1233333222 12223456677888888888999999999999987742 1
Q ss_pred CHHHHHHHHHHhCCeEEEecccccCCCCCCccc-ccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecc---cccCCHHH
Q 019100 149 HVSEMAKAVELLGLRACLVQSTMDCGEGLPASW-AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ---IMNATDRL 224 (346)
Q Consensus 149 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 224 (346)
..+.+.+..++..-+. ..+++.+ |... ......+.++++.+ . .+.+. ++ |+. ....+++.
T Consensus 100 ~~~a~~~~r~~~~~~i--dlq~vaf----Pq~g~~~~~~~~l~~~al~-------~-advvG-Gi-P~~~~~~~~~~~e~ 163 (329)
T PRK06886 100 AIIAAHKAREVYKHDI--ILKFANQ----TLKGVIEPTAKKWFDIGSE-------M-VDMIG-GL-PYRDELDYGRGLEA 163 (329)
T ss_pred HHHHHHHHHHHhcCcc--eEEEEec----ChhhccCccHHHHHHHHHH-------h-CCEEe-Cc-cCCcCCCCCCCHHH
Confidence 2344444444432111 1112111 1111 11112222222221 1 12222 12 333 13567899
Q ss_pred HHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhh-------HHHHHhcC
Q 019100 225 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE-------IGLLSRAG 297 (346)
Q Consensus 225 l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~-------i~~l~~~g 297 (346)
++.++++|+++|+++++|+.|+........+. ..+...+.|+.+ ++++.|++.+++.+ ++++++.|
T Consensus 164 l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~------l~~~~~~~Gl~g-rV~~sH~~~L~~~~~~~~~~~i~~La~ag 236 (329)
T PRK06886 164 MDILLDTAKSLGKMVHVHVDQFNTPKEKETEQ------LCDKTIEHGMQG-RVVAIHGISIGAHSKEYRYRLYQKMREAD 236 (329)
T ss_pred HHHHHHHHHHcCCCeEEeECCCCchhHHHHHH------HHHHHHHcCCCC-CEEEEEeccccCcChhhHHHHHHHHHHcC
Confidence 99999999999999999999876543333221 233344789876 79999999999876 99999999
Q ss_pred CeEEEChhhhcc---------c-cccccHHHHHHcCCcEEEcCCCCC----CCCCCCCCCC
Q 019100 298 VKVSHCPASAMR---------M-LGFAPIKEMLHADICVSLGTDGAP----SNNRMSIGPF 344 (346)
Q Consensus 298 ~~v~~~p~~~~~---------l-~~~~~~~~~~~~Gv~v~~GTD~~~----~~~~~~~~~~ 344 (346)
+.|+.||.+|.+ . .|.+|+++|+++||+|++|||+.. ++++.|||++
T Consensus 237 i~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aGV~V~lGtDnv~D~~~p~g~~Dmle~ 297 (329)
T PRK06886 237 MMVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEGITVALGTDNICDYMVPLCEGDMWQE 297 (329)
T ss_pred CeEEECchhhhhhccccccCcCCCCCCCHHHHHHCCCeEEEecCCCcccCCCCCCCCHHHH
Confidence 999999998763 2 467899999999999999999874 3577898765
No 51
>PRK09358 adenosine deaminase; Provisional
Probab=99.86 E-value=3.2e-20 Score=168.04 Aligned_cols=221 Identities=18% Similarity=0.173 Sum_probs=153.1
Q ss_pred ccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEee---ecCc-----CC--------HHHHHHHHH
Q 019100 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA---EAGG-----QH--------VSEMAKAVE 158 (346)
Q Consensus 95 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~---d~~~-----~~--------~~~~~~~~~ 158 (346)
|+...+.++.+|+..+.|+.....++++.+..++..+.++++.|||++- +... .. .+.+.++..
T Consensus 51 r~~~~~~~l~~~l~~~~~~~~~~~t~ed~~~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~~ 130 (340)
T PRK09358 51 RAAYDFRDLQSFLDKYDAGVAVLQTEEDLRRLAFEYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAEA 130 (340)
T ss_pred cccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 5555666788999888888777889999999999999999999999752 2210 01 122334445
Q ss_pred HhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeccc-ccCCHHHHHHHHHHHHHcCC
Q 019100 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRDMAREFKT 237 (346)
Q Consensus 159 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a~~~g~ 237 (346)
..|++..+.....+.. + .+........+++.+.. ++.+. ++..+. ...+++.+.++++.|+++|+
T Consensus 131 ~~gi~~~li~~~~r~~---~-------~~~~~~~~~~~~~~~~~--~~vvg--~~l~g~e~~~~~~~~~~~~~~A~~~g~ 196 (340)
T PRK09358 131 EFGISVRLILCFMRHF---G-------EEAAARELEALAARYRD--DGVVG--FDLAGDELGFPPSKFARAFDRARDAGL 196 (340)
T ss_pred hcCceEEEEEEecCCC---C-------HHHHHHHHHHHHHHhcC--CcEEE--EeCCCcCCCCCHHHHHHHHHHHHHCCC
Confidence 5688887765443211 1 12223333444443322 23333 344332 34578899999999999999
Q ss_pred eEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC--hhhHHHHHhcCCeEEEChhhhccc-c---
Q 019100 238 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM-L--- 311 (346)
Q Consensus 238 ~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~--~~~i~~l~~~g~~v~~~p~~~~~l-~--- 311 (346)
++++|+.|.....+ ..+.++.+| ++ .+.||.+++ +++++++++.|+.+++||.||..+ .
T Consensus 197 ~~~~H~~E~~~~~~-----------~~~al~~lg---~~-ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~~~~ 261 (340)
T PRK09358 197 RLTAHAGEAGGPES-----------IWEALDELG---AE-RIGHGVRAIEDPALMARLADRRIPLEVCPTSNVQTGAVPS 261 (340)
T ss_pred CeEEcCCCCCchhH-----------HHHHHHHcC---Cc-ccchhhhhccCHHHHHHHHHcCCeEEECCCccccccccCC
Confidence 99999998653211 122233333 33 358999996 456999999999999999999877 3
Q ss_pred -ccccHHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 312 -GFAPIKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 312 -~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
+..|+++++++||+|++|||+++.++ .||++||
T Consensus 262 ~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~e~ 295 (340)
T PRK09358 262 LAEHPLKTLLDAGVRVTINTDDPLVFG-TTLTEEY 295 (340)
T ss_pred cccChHHHHHHCCCEEEECCCCCcccC-CCHHHHH
Confidence 56899999999999999999987665 5898876
No 52
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=99.85 E-value=6.4e-20 Score=167.91 Aligned_cols=256 Identities=19% Similarity=0.176 Sum_probs=144.6
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
++++|+|++|++.++ +. .++|+|+||||++|++... ...++||++|++|+|||||+|+|....
T Consensus 2 ~~~~i~~~~v~~~~~---~~-~~~i~i~~g~I~~i~~~~~-------~~~~~iDa~g~~v~PG~ID~H~h~~~~------ 64 (383)
T PRK15446 2 MEMILSNARLVLPDE---VV-DGSLLIEDGRIAAIDPGAS-------ALPGAIDAEGDYLLPGLVDLHTDNLEK------ 64 (383)
T ss_pred ccEEEECcEEEcCCC---ce-eeeEEEECCEEEEecCCCC-------CCCceEeCCCCEEEeCeEEcccCCccc------
Confidence 468999999998542 33 6899999999999997532 134789999999999999999965320
Q ss_pred CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC-cC--C-----HH----HHHHHHHHhCCeEEE
Q 019100 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQ--H-----VS----EMAKAVELLGLRACL 166 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~-~~--~-----~~----~~~~~~~~~g~~~~~ 166 (346)
.+.+|... .|+. .+.+. ...++++..||||+.|+. .. . .. .+.+.......+
T Consensus 65 ---~~~p~~~~-~~~~-----~~~~~----~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (383)
T PRK15446 65 ---HLAPRPGV-DWPA-----DAALA----AHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARAR--- 128 (383)
T ss_pred ---ccCCCCCC-ccch-----HHHHH----HHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhc---
Confidence 00111100 0111 12211 223678899999999963 11 1 12 111222200000
Q ss_pred ecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeec-------------------------------
Q 019100 167 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIR------------------------------- 215 (346)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------- 215 (346)
.....|++........ ..+.+.+..+++ ..+.-.++.++...
T Consensus 129 ~~~~vD~~~h~~~~~~---~~~~~~~l~~~~----~~g~~~~k~fm~~~p~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~ 201 (383)
T PRK15446 129 GLLRADHRLHLRCELT---NPDALELFEALL----AHPRVDLVSLMDHTPGQRQFRDLEKYREYYAGKYGLSDEEFDAFV 201 (383)
T ss_pred CchhccceeEEEEEec---CcchHHHHHHHh----cCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHH
Confidence 0111122110000000 000011111111 11111111111110
Q ss_pred -----ccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhH
Q 019100 216 -----QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEI 290 (346)
Q Consensus 216 -----~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i 290 (346)
....++.+.++.+++.|+++|+++..|+.++...+ +...+.|+. . ++| ..+.+.+
T Consensus 202 ~~~~~~~~~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i--------------~~a~~~Gv~---~-~e~--~~~~e~~ 261 (383)
T PRK15446 202 EERIALSARYAPPNRRAIAALARARGIPLASHDDDTPEHV--------------AEAHALGVA---I-AEF--PTTLEAA 261 (383)
T ss_pred HHHHHhHhhcCHHHHHHHHHHHHHCCCceeecCCCCHHHH--------------HHHHHcCCc---e-eeC--CCcHHHH
Confidence 02335788899999999999999999997655432 223344442 2 244 4566778
Q ss_pred HHHHhcCCeEEEChhhhccc---cccccHHHHHHcCCcEEEcCCCCC
Q 019100 291 GLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 291 ~~l~~~g~~v~~~p~~~~~l---~~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
..+++.|+.++.++....+. .+..++.++++.|+++++|||+.|
T Consensus 262 ~~~~~~g~~v~~~~p~~~r~~~~~~~~~~~~~~~~Gv~~~lgSD~~p 308 (383)
T PRK15446 262 RAARALGMSVLMGAPNVVRGGSHSGNVSALDLAAAGLLDILSSDYYP 308 (383)
T ss_pred HHHHHCCCEEEeCCcccccCCcccchHhHHHHHHCCCcEEEEcCCCh
Confidence 88888999988776432221 346788999999999999999865
No 53
>PLN02795 allantoinase
Probab=99.85 E-value=2e-19 Score=170.00 Aligned_cols=275 Identities=15% Similarity=0.106 Sum_probs=152.3
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
+.+++|+|++|++.+ .+ ..++|+|+||+|++|++..+.... .++.++||++|++|+|||||+|+|+....
T Consensus 43 ~~~~vi~~~~vv~~~---~~-~~~~v~i~dG~I~~I~~~~~~~~~--~~~~~~ida~G~~v~PG~ID~H~H~~~~~---- 112 (505)
T PLN02795 43 WPHFVLYSKRVVTPA---GV-IPGAVEVEGGRIVSVTKEEEAPKS--QKKPHVLDYGNAVVMPGLIDVHVHLNEPG---- 112 (505)
T ss_pred ccceEEECCEEEECC---Ce-EEEEEEEECCEEEEecCccccccc--cCCCEEEECCCCEEecCEEecccCcCCCC----
Confidence 468999999999743 23 358999999999999875431100 12458999999999999999999985410
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc-CC----HHHHHHHHHHhCCeEEEeccccc
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-QH----VSEMAKAVELLGLRACLVQSTMD 172 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~-~~----~~~~~~~~~~~g~~~~~~~~~~~ 172 (346)
... .++... ..+.++..|||++.+++. .. .....+...+. ......++
T Consensus 113 -----~~~--------------~e~~~~----~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~----~~~~~~vd 165 (505)
T PLN02795 113 -----RTE--------------WEGFPT----GTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEA----AKGKLYVD 165 (505)
T ss_pred -----ccc--------------hhHHHH----HHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHH----hccCceee
Confidence 000 122222 334567799999999972 11 12222221111 11111222
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccc---cCCHHHHHHHHHHHHHcCCeEEEEecCChhh
Q 019100 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIM---NATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (346)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 249 (346)
.+.. ... ....... .+.++.+...+.--+++++++++.+ ..+.+.+.++++.++++|.++++|+.....
T Consensus 166 ~~~~--~~~-~~~~~~~----~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l- 237 (505)
T PLN02795 166 VGFW--GGL-VPENAHN----ASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSP- 237 (505)
T ss_pred eece--ecc-cCcchhH----HHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhH-
Confidence 2210 000 0000111 1122222212221266666665433 567889999999999999999999855331
Q ss_pred HHHHHH-hcCC-------CCC-----------HHHHHHHcCCC----CCCeeEEEeccC-Ch-hhHHHHHhcC--CeEEE
Q 019100 250 NQVVMD-TRKV-------DHG-----------TVTFLDKIEFL----QNNLLSAHTVWV-NH-TEIGLLSRAG--VKVSH 302 (346)
Q Consensus 250 ~~~~~~-~~g~-------~~~-----------~~~~l~~~g~l----~~~~~~~H~~~~-~~-~~i~~l~~~g--~~v~~ 302 (346)
...... ..+. ..+ ..++.+..|+- +.+.++.|.+.. .. +.+..+++.| +++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev 317 (505)
T PLN02795 238 VESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVET 317 (505)
T ss_pred hhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEe
Confidence 110000 0000 000 12223333221 557677776643 22 3356666777 66677
Q ss_pred Chhh----hcc-------------c---cccccHHHHHHcCCcEEEcCCCCCCCC
Q 019100 303 CPAS----AMR-------------M---LGFAPIKEMLHADICVSLGTDGAPSNN 337 (346)
Q Consensus 303 ~p~~----~~~-------------l---~~~~~~~~~~~~Gv~v~~GTD~~~~~~ 337 (346)
||.- ... + .....+.++++.|..-.+|||+.|.+.
T Consensus 318 ~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~ 372 (505)
T PLN02795 318 CPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPP 372 (505)
T ss_pred ChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCCh
Confidence 8831 000 0 012346678889999999999999653
No 54
>PRK09237 dihydroorotase; Provisional
Probab=99.84 E-value=8.4e-19 Score=161.36 Aligned_cols=257 Identities=16% Similarity=0.143 Sum_probs=148.8
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|++.... .....+|+|++|||++|++..+. ....++||++|++|+|||||+|+|+....
T Consensus 1 ~~i~~~~v~d~~~~--~~~~~~v~i~~g~I~~v~~~~~~-----~~~~~~iD~~g~~v~PG~iD~H~H~~~~~------- 66 (380)
T PRK09237 1 LLLRGGRVIDPANG--IDGVIDIAIEDGKIAAVAGDIDG-----SQAKKVIDLSGLYVSPGWIDLHVHVYPGS------- 66 (380)
T ss_pred CEEEeEEEECCCCC--cccceEEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEecCEEEeeecCCCCC-------
Confidence 47999999975432 23568999999999999875432 12467999999999999999999986521
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc---CCHHHHHHHHHHh-CCeEEEecccccCCCC
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELL-GLRACLVQSTMDCGEG 176 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~---~~~~~~~~~~~~~-g~~~~~~~~~~~~g~~ 176 (346)
. . . +. .....++..|+||+++++. ...+.+.+..... +.+......+...++.
T Consensus 67 -~--~-----------~---~~------~~~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~ 123 (380)
T PRK09237 67 -T--P-----------Y---GD------EPDEVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLL 123 (380)
T ss_pred -C--c-----------c---CC------CHHHHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeeccccc
Confidence 0 0 0 00 0113478899999999763 2344455444444 5555443333223221
Q ss_pred CCcccccCChHHHHHHHHHHHHHHcCCCCCCe--EEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHH
Q 019100 177 LPASWAVRTTDDCIQSQKELYAKHHHAADGRI--RIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (346)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~ 254 (346)
.+. ..........+...+++.++.. +.+ +..+..........+.++....++++.|+++.+|+.+.....+.+.
T Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~~~~~---~v~glk~~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~ 199 (380)
T PRK09237 124 AQD-ELADLEDIDADAVAEAVKRNPD---FIVGIKARMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEIL 199 (380)
T ss_pred ccc-hhcCHhHCCHHHHHHHHHhCcC---cEEEEEEEEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHHH
Confidence 111 1111111112233444443322 222 2222211111111133445556667899999999976554333221
Q ss_pred HhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh-----------hhHHHHHhcCCeEEEChhhhccccccccHHHHHHcC
Q 019100 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHAD 323 (346)
Q Consensus 255 ~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~-----------~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~G 323 (346)
+. +.+...+.|++..++ ++.....++|..+.++..+.. ....+.++++++|
T Consensus 200 -------------~~---l~~g~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g~~~--~~~~~~~~l~~~g 261 (380)
T PRK09237 200 -------------EL---LRPGDILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHGTAS--FSFKVAEAAIAAG 261 (380)
T ss_pred -------------hh---ccCCCEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCCCCc--ccHHHHHHHHHCC
Confidence 11 222346789998876 566777888998876643210 1335667888999
Q ss_pred C-cEEEcCCCCCCC
Q 019100 324 I-CVSLGTDGAPSN 336 (346)
Q Consensus 324 v-~v~~GTD~~~~~ 336 (346)
+ +.+++||..+.+
T Consensus 262 ~~~~~l~tD~~~~~ 275 (380)
T PRK09237 262 ILPDTISTDIYCRN 275 (380)
T ss_pred CCceEEECCCCCCC
Confidence 6 679999987643
No 55
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=99.83 E-value=2.1e-19 Score=168.47 Aligned_cols=264 Identities=16% Similarity=0.138 Sum_probs=145.6
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|+++++ . ..++|+|+||+|++|++... ..+.++||++|++|+|||||+|+|+....
T Consensus 1 dl~i~~~~v~~~~~---~-~~~~v~i~dg~I~~i~~~~~------~~~~~~id~~g~~v~PG~ID~H~H~~~~~------ 64 (443)
T TIGR03178 1 DLIIRGGRVILPNG---E-READVGVKGGKIAAIGPDIL------GPAAKIIDAGGLVVFPGVVDTHVHINEPG------ 64 (443)
T ss_pred CEEEECcEEECCCC---c-eEEEEEEECCEEEEeeCCCC------CCCCeEEECCCCEEeccEeccccccCCCC------
Confidence 47899999997542 2 45899999999999987532 23468999999999999999999986410
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC-cCC-----HHHHHHHHHHhCCeEEEecccccC
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQH-----VSEMAKAVELLGLRACLVQSTMDC 173 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~-~~~-----~~~~~~~~~~~g~~~~~~~~~~~~ 173 (346)
.. ..++.. ...+.++..|||++.+++ +.. ...+....+...-+........ .
T Consensus 65 -~~----------------~~~~~~----~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~-~ 122 (443)
T TIGR03178 65 -RT----------------EWEGFE----TGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFW-G 122 (443)
T ss_pred -cc----------------ccchHH----HHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEE-e
Confidence 00 011211 123457899999999986 211 1122222222111111111010 0
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeccc---ccCCHHHHHHHHHHHHHcCCeEEEEecCChhhH
Q 019100 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI---MNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (346)
Q Consensus 174 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 250 (346)
+ ... +.+... ..+...+...+++++++.+. ...+.+.+.++++.++++|.++++|+ |+....
T Consensus 123 ~--~~~--------~~~~~i----~~~~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-E~~~~~ 187 (443)
T TIGR03178 123 G--LVP--------YNLDDL----RELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQLLLVHA-ENPAIT 187 (443)
T ss_pred c--cCC--------CCHHHH----HHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEec-cChHHH
Confidence 0 110 111122 22222333456666655432 35678899999999999999999995 554333
Q ss_pred HHHH---HhcC-------CCCC--------HHHHHHHcCCCCCCeeEEEeccCC-hhhHHHHHhcCCeE--EEChhhhc-
Q 019100 251 QVVM---DTRK-------VDHG--------TVTFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGVKV--SHCPASAM- 308 (346)
Q Consensus 251 ~~~~---~~~g-------~~~~--------~~~~l~~~g~l~~~~~~~H~~~~~-~~~i~~l~~~g~~v--~~~p~~~~- 308 (346)
.... ...| ...+ ..+.++.....+.+.++.|..... -+.++.+++.|+.+ .+||....
T Consensus 188 ~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vhi~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l 267 (443)
T TIGR03178 188 SALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTL 267 (443)
T ss_pred HHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEECccceEe
Confidence 3110 0001 0000 111122122223466566655422 23355566677544 44764210
Q ss_pred ---cc--c--------------ccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 309 ---RM--L--------------GFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 309 ---~l--~--------------~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
.+ . +...+.++++.|+..+++||+.|.+
T Consensus 268 ~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SDh~p~~ 314 (443)
T TIGR03178 268 TAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCT 314 (443)
T ss_pred cHHHhhCcCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCCCCCCC
Confidence 00 0 1123456688899999999998754
No 56
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=99.83 E-value=5.1e-19 Score=159.44 Aligned_cols=221 Identities=18% Similarity=0.153 Sum_probs=149.0
Q ss_pred ccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeec-Cc-------CC--------HHHHHHHHH
Q 019100 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA-GG-------QH--------VSEMAKAVE 158 (346)
Q Consensus 95 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~-~~-------~~--------~~~~~~~~~ 158 (346)
++...+.++.+|+....++.....++++.+..++..+.++++.|||++--. .+ .. .+.+.+...
T Consensus 43 ~~~~~~~~l~~~l~~~~~~~~~~~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~ 122 (325)
T cd01320 43 VAAYNFSDLQDFLAKYDFGLSVLQTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEA 122 (325)
T ss_pred hccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 344456667788888777777778899999999999999999999965211 11 01 123334445
Q ss_pred HhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCe
Q 019100 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 238 (346)
Q Consensus 159 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 238 (346)
+.|++..+....... .+ .+...+..++..++.. ++.+.+.+... ....+.+.+..+++.|+++|++
T Consensus 123 ~~gi~~~l~~~~~~~---~~--------~~~~~~~~~~~~~~~~--~~vvg~~l~~~-~~~~~~~~~~~~~~~A~~~g~~ 188 (325)
T cd01320 123 EFGIKARLILCGLRH---LS--------PESAQETLELALKYRD--KGVVGFDLAGD-EVGFPPEKFVRAFQRAREAGLR 188 (325)
T ss_pred hcCCeEEEEEEecCC---CC--------HHHHHHHHHHHHhccC--CCEEEeecCCC-CCCCCHHHHHHHHHHHHHCCCc
Confidence 568887665433211 11 1223334444444432 23333333322 1234788999999999999999
Q ss_pred EEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC--hhhHHHHHhcCCeEEEChhhhccc-cc---
Q 019100 239 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM-LG--- 312 (346)
Q Consensus 239 v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~--~~~i~~l~~~g~~v~~~p~~~~~l-~~--- 312 (346)
+++|+.|+....+ ..+.++.+|. . .+.|+.+++ +++++++++.|+.+++||.+|..+ ..
T Consensus 189 v~~H~~E~~~~~~-----------~~~a~~~~g~---~-~i~H~~~l~~~~~~~~~l~~~gi~v~~~P~sn~~l~~~~~~ 253 (325)
T cd01320 189 LTAHAGEAGGPES-----------VRDALDLLGA---E-RIGHGIRAIEDPELVKRLAERNIPLEVCPTSNVQTGAVKSL 253 (325)
T ss_pred eEEeCCCCCCHHH-----------HHHHHHHcCC---c-ccchhhccCccHHHHHHHHHcCCeEEECCCccccccccCCc
Confidence 9999998743211 2223333443 3 468999995 568999999999999999999876 32
Q ss_pred -cccHHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 313 -FAPIKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 313 -~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
..|++.++++||+|++|||+++.++ .||+.+|
T Consensus 254 ~~~p~~~l~~~Gv~v~lgTD~~~~~~-~~~~~e~ 286 (325)
T cd01320 254 AEHPLRELLDAGVKVTINTDDPTVFG-TYLTDEY 286 (325)
T ss_pred ccChHHHHHHCCCEEEECCCCCcccC-CCHHHHH
Confidence 5799999999999999999986554 5887765
No 57
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.82 E-value=5.4e-19 Score=165.04 Aligned_cols=188 Identities=17% Similarity=0.190 Sum_probs=124.6
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhh--hhh---cCCCCeEEecCCCEEeecccccccCCcccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--QQF---SQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~--~~~---~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 93 (346)
.+++|+|++|++. . . +..++|.|+||||++|++..+.. ... .+...++||++|++|+|||||+|+|+..
T Consensus 66 MDlVIkNg~VID~--~-g-i~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~-- 139 (567)
T TIGR01792 66 LDLVITNALILDW--T-G-IYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYIS-- 139 (567)
T ss_pred CcEEEECeEEECC--C-C-eEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCC--
Confidence 3689999999973 2 2 35789999999999998754210 000 0134689999999999999999999843
Q ss_pred cccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc---------------CCHHHHHHHHH
Q 019100 94 AKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---------------QHVSEMAKAVE 158 (346)
Q Consensus 94 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~---------------~~~~~~~~~~~ 158 (346)
++. .+.++..|+|++.+.+. .....+.+...
T Consensus 140 --------------------------P~~--------~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~ 185 (567)
T TIGR01792 140 --------------------------PQQ--------VQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAAD 185 (567)
T ss_pred --------------------------ccH--------HHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhc
Confidence 111 24578899999998532 01122334444
Q ss_pred HhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCe
Q 019100 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 238 (346)
Q Consensus 159 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 238 (346)
..+++..+. ..+ .. .......++++ . |. .++.++..+.++++.++++++.|++++++
T Consensus 186 ~~~in~g~~----g~g--~~---------~~~~~L~e~i~----a--Ga--~gfK~h~~y~~s~e~L~~al~~A~e~gv~ 242 (567)
T TIGR01792 186 GLPINFGFT----GKG--SG---------SGPAALIEQIE----A--GA--CGLKVHEDWGATPAAIDNALSVADEYDVQ 242 (567)
T ss_pred cCCccEEEE----eCC--cc---------chHHHHHHHHH----c--CC--cEEEeCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 445543221 011 00 11112222222 1 21 34667777789999999999999999999
Q ss_pred EEEEecCChhh---HHHHHHhcCCCCCHHHHHHHcCC
Q 019100 239 IHMHVAEIPYE---NQVVMDTRKVDHGTVTFLDKIEF 272 (346)
Q Consensus 239 v~~H~~~~~~~---~~~~~~~~g~~~~~~~~l~~~g~ 272 (346)
+++|+ ++..+ .+...++++.. +++++...|+
T Consensus 243 V~iH~-ET~~E~g~ve~t~~a~g~r--pIh~~H~~G~ 276 (567)
T TIGR01792 243 VAVHT-DTLNESGFVEDTIAAFKGR--TIHTYHTEGA 276 (567)
T ss_pred EEEeC-CCcccchHHHHHHHHHCCC--cchhHhhcCC
Confidence 99999 88888 77777777764 7777777666
No 58
>PRK13404 dihydropyrimidinase; Provisional
Probab=99.82 E-value=9e-19 Score=164.88 Aligned_cols=270 Identities=17% Similarity=0.238 Sum_probs=150.1
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
+.+++|+|++|++.++ . ...+|+|+||+|++|++.. +.+.++||++|++|+|||||+|+|+......+
T Consensus 3 ~~d~~i~~~~v~~~~~---~-~~~~i~I~dg~I~~i~~~~-------~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~- 70 (477)
T PRK13404 3 AFDLVIRGGTVVTATD---T-FQADIGIRGGRIAALGEGL-------GPGAREIDATGRLVLPGGVDSHCHIDQPSGDG- 70 (477)
T ss_pred CCcEEEECCEEEcCCC---c-eEEEEEEECCEEEEecCCC-------CCCCeEEECCCCEEecCEEEeEEcCCccccCC-
Confidence 4478999999997432 2 3589999999999998642 12458999999999999999999996521000
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC----CHHHHHHHHH-HhCCeEEEeccccc
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVE-LLGLRACLVQSTMD 172 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~----~~~~~~~~~~-~~g~~~~~~~~~~~ 172 (346)
....++.... .+.++..|||++.++... ...+.++... ...-+.. .+
T Consensus 71 -------------------~~~~e~~~~~----s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----vd 122 (477)
T PRK13404 71 -------------------IMMADDFYTG----TVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAV-----ID 122 (477)
T ss_pred -------------------ccccchHHHH----HHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcE-----EE
Confidence 0011222222 245668999999997632 1222222222 1111111 11
Q ss_pred CCCCCCcccccCChHHHH-HHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHH
Q 019100 173 CGEGLPASWAVRTTDDCI-QSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (346)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 251 (346)
++...... ....+.+ ++..++. ..+...++++++..+ ...+++.+.++++.|+++|.++.+|+.... ...
T Consensus 123 ~~~~~~~~---~~~~~~~~~~v~~l~----~~G~~~iKi~~~~~~-~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~-~i~ 193 (477)
T PRK13404 123 YAFHLIVA---DPTEEVLTEELPALI----AQGYTSFKVFMTYDD-LKLDDRQILDVLAVARRHGAMVMVHAENHD-MIA 193 (477)
T ss_pred EEEEEEec---CCChhhHHHHHHHHH----HcCCCEEEEEecCCC-CCCCHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence 11100000 0001112 2223322 223445676554222 456788999999999999999999995433 221
Q ss_pred HH---HHhcCC-------CCCH--------HHHHHHcCCCCCCeeEEEeccCCh-hhHHHHHhcC--CeEEEChhhh---
Q 019100 252 VV---MDTRKV-------DHGT--------VTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAG--VKVSHCPASA--- 307 (346)
Q Consensus 252 ~~---~~~~g~-------~~~~--------~~~l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g--~~v~~~p~~~--- 307 (346)
.. ...-|. ..++ .+.+.-....+.++++.|.+.... +.+..+++.| +.+.+||..-
T Consensus 194 ~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~hi~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~ 273 (477)
T PRK13404 194 WLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLT 273 (477)
T ss_pred HHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccC
Confidence 00 011110 0000 111122223344666777664222 3455566667 4556787420
Q ss_pred ---c-c---c-------------cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 308 ---M-R---M-------------LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 308 ---~-~---l-------------~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
. . . .....+-++++.|...+++||+.|..
T Consensus 274 ~~~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sDHap~~ 322 (477)
T PRK13404 274 AEDLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFR 322 (477)
T ss_pred HHHhcCccccCCceEECCCCCChHHHHHHHHHHhCCCceEEecCCCCCC
Confidence 0 0 0 01235677899999999999999864
No 59
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.82 E-value=7.4e-19 Score=147.07 Aligned_cols=258 Identities=16% Similarity=0.170 Sum_probs=150.9
Q ss_pred CCcceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccc
Q 019100 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (346)
Q Consensus 16 ~~~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~ 95 (346)
+|+.++||+|++++++.. .+-...+|+|.||+|++++ ..+. +.+.++||++|++|.||+||.|+|.+...
T Consensus 1 ~mqfdiLLt~~rlidpa~--g~d~~tniai~ngkIaa~~-d~~a-----pa~tq~Ida~Gc~VspG~iDlHvHvy~gg-- 70 (386)
T COG3964 1 MMQFDILLTGGRLIDPAR--GIDEITNIAIINGKIAAAD-DYPA-----PAETQIIDADGCIVSPGLIDLHVHVYYGG-- 70 (386)
T ss_pred CCccceeeeCCeeccccc--ccCccceeeeecCeEEecc-CcCC-----ChhheEEccCccEeccCeeeeeeEEecCC--
Confidence 357899999999996543 3446679999999999999 3332 23467999999999999999999997631
Q ss_pred cccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC---HHHHHHHH-HHhCCeEEEecccc
Q 019100 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAV-ELLGLRACLVQSTM 171 (346)
Q Consensus 96 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~---~~~~~~~~-~~~g~~~~~~~~~~ 171 (346)
+. ....|+. -....|+||+.|.+... ...+.+.. +....|...+..+.
T Consensus 71 ------t~------------~~v~pd~----------~ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs 122 (386)
T COG3964 71 ------TE------------GGVRPDM----------YGAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVS 122 (386)
T ss_pred ------Cc------------cCcCHHH----------ccccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeecc
Confidence 10 0111221 14467999999987432 22222222 22223333333332
Q ss_pred cCCCCCCcccccCChHHH-HHHHHHHHHHHcCCCCCC-eEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhh
Q 019100 172 DCGEGLPASWAVRTTDDC-IQSQKELYAKHHHAADGR-IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (346)
Q Consensus 172 ~~g~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 249 (346)
..|.....+.. ....+ .+...+.++++...-.|+ ++..-..-+.+..+| ++...++|++.++++++|..+.+..
T Consensus 123 ~~Gl~a~nE~~--d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~GitP--l~la~~ia~~~klPlmvHigePp~~ 198 (386)
T COG3964 123 PPGLTASNELY--DPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGITP--LTLALRIANDLKLPLMVHIGEPPVL 198 (386)
T ss_pred CcceeeehhhC--ChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccccCCch--HHHHHHHHhhcCCceEEecCCCCcc
Confidence 22211111111 11110 112333333332211111 111112234455566 6667889999999999999997765
Q ss_pred HHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC------h-----hhHHHHHhcCCeEEEChhhhccccccccHHH
Q 019100 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN------H-----TEIGLLSRAGVKVSHCPASAMRMLGFAPIKE 318 (346)
Q Consensus 250 ~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~------~-----~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~ 318 (346)
.+++.+ .|.+.-++.||++-- + .++.+.+++|+.+-.-.-... ..+.--++
T Consensus 199 ~dEvle----------------rL~~GDIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~as--fsf~vAr~ 260 (386)
T COG3964 199 MDEVLE----------------RLRRGDIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRAS--FSFNVARR 260 (386)
T ss_pred HHHHHH----------------hccCCceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCcce--eeHHHHHH
Confidence 444333 234566778998732 2 346788888987654432110 13345688
Q ss_pred HHHcCC-cEEEcCCCC
Q 019100 319 MLHADI-CVSLGTDGA 333 (346)
Q Consensus 319 ~~~~Gv-~v~~GTD~~ 333 (346)
++..|+ +..++||-.
T Consensus 261 aia~GllP~~ISSDlh 276 (386)
T COG3964 261 AIANGLLPDIISSDLH 276 (386)
T ss_pred HHhcCCCcceeeccce
Confidence 889998 688999954
No 60
>PRK06189 allantoinase; Provisional
Probab=99.81 E-value=1e-17 Score=157.22 Aligned_cols=274 Identities=16% Similarity=0.151 Sum_probs=147.3
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
+.+++|+|++|++.++ . ..++|+|+||+|++|++..+ ....++||++|++|+|||||+|+|+....
T Consensus 2 ~~~~~i~~~~v~~~~~---~-~~~~v~i~~G~I~~i~~~~~------~~~~~~iD~~g~~vlPG~ID~H~H~~~~~---- 67 (451)
T PRK06189 2 MYDLIIRGGKVVTPEG---V-YRADIGIKNGKIAEIAPEIS------SPAREIIDADGLYVFPGMIDVHVHFNEPG---- 67 (451)
T ss_pred CccEEEECCEEEcCCC---c-EEEEEEEECCEEEEecCCCC------CCCCeEEECCCCEEecCEEEeeeccCCCC----
Confidence 3468999999997542 2 46899999999999987532 12467899999999999999999985510
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC-cC-----CHHHHHHHHHHhCCeEEEecccc
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQ-----HVSEMAKAVELLGLRACLVQSTM 171 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~-~~-----~~~~~~~~~~~~g~~~~~~~~~~ 171 (346)
....++... ..+.++..|+|++.+++ +. ..+.+....+...........+.
T Consensus 68 -------------------~~~~~~~~~----~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~ 124 (451)
T PRK06189 68 -------------------RTHWEGFAT----GSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALW 124 (451)
T ss_pred -------------------CCCcccHHH----HHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEE
Confidence 000122121 12457789999999985 21 12222222222222221111111
Q ss_pred cCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeec---ccccCCHHHHHHHHHHHHHcCCeEEEEecCChh
Q 019100 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIR---QIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (346)
Q Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 248 (346)
.+ .... .+.+..++. ..+.-.++.+.... +.+..+...+.++++.+++.+..+.+|+....
T Consensus 125 -~~--~~~~--------~~~~l~~l~----~~Gv~~~k~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~- 188 (451)
T PRK06189 125 -GG--LVPG--------NLEHLRELA----EAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDA- 188 (451)
T ss_pred -ec--cccc--------CHHHHHHHH----HcCCcEEEEEccccCCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChH-
Confidence 00 1110 112222222 11222233333221 22245667788888988899999999984433
Q ss_pred hHHHH---HHhcC-------CCCC--------HHHHHHHcCCCCCCeeEEEeccCCh-hhHHHHHhcC--CeEEEChhhh
Q 019100 249 ENQVV---MDTRK-------VDHG--------TVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAG--VKVSHCPASA 307 (346)
Q Consensus 249 ~~~~~---~~~~g-------~~~~--------~~~~l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g--~~v~~~p~~~ 307 (346)
-.... ....| ...+ ..+.+.-....+.+.++.|...... +.+..+++.| ++..+||..-
T Consensus 189 ~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L 268 (451)
T PRK06189 189 LTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYL 268 (451)
T ss_pred HHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHh
Confidence 11111 00001 0000 0111221222334666666553222 2344555666 5556777421
Q ss_pred ------cc-----------c---cccccHHHHHHcCCcEEEcCCCCCCCCC----CCCCCC
Q 019100 308 ------MR-----------M---LGFAPIKEMLHADICVSLGTDGAPSNNR----MSIGPF 344 (346)
Q Consensus 308 ------~~-----------l---~~~~~~~~~~~~Gv~v~~GTD~~~~~~~----~~~~~~ 344 (346)
.. + ....++.++++.|+.+++|||+.|.+.. .++++.
T Consensus 269 ~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~K~~~~~~~~ 329 (451)
T PRK06189 269 LFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKEGDDFFLV 329 (451)
T ss_pred hcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCCceEEECCCCCCCHHHcCcCCcccC
Confidence 00 0 1124567799999999999999986543 355543
No 61
>PRK07627 dihydroorotase; Provisional
Probab=99.81 E-value=8.3e-18 Score=155.99 Aligned_cols=263 Identities=14% Similarity=0.166 Sum_probs=143.7
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|+++.+. ....++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+... |.
T Consensus 2 ~~~i~~~~v~~~~~~--~~~~~~I~I~~g~I~~i~~~~~~-----~~~~~~iDa~g~~vlPG~iD~H~H~~~~---g~-- 69 (425)
T PRK07627 2 KIHIKGGRLIDPAAG--TDRQADLYVAAGKIAAIGQAPAG-----FNADKTIDASGLIVCPGLVDLSARLREP---GY-- 69 (425)
T ss_pred eEEEEeeEEECCCCC--ccceeEEEEECCEEEEecCCCcC-----CCCCeEEECCCCEEeccEEeccccccCC---Cc--
Confidence 589999999975432 23568999999999999874211 1346899999999999999999999541 00
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC----HHHHHHHH----HH-hCCeEEEeccc
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAV----EL-LGLRACLVQST 170 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~----~~~~~~~~----~~-~g~~~~~~~~~ 170 (346)
...++.... .+.++..||||++++.... .....+.. .. .+... +....
T Consensus 70 ------------------~~~e~~~t~----s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 126 (425)
T PRK07627 70 ------------------EYKATLESE----MAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHV-YPLGA 126 (425)
T ss_pred ------------------cccCcHHHH----HHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeE-EEeCe
Confidence 001221222 2567889999999986421 11111111 11 11221 11111
Q ss_pred ccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhH
Q 019100 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (346)
Q Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 250 (346)
+..+ .. .+.+.+..++.+ . |-. .+.....+..+...+.++++.+++.|..+.+|+-.... .
T Consensus 127 ~~~g------~~----~~~~~~i~~l~~----~--G~~--~fk~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~-~ 187 (425)
T PRK07627 127 LTVG------LK----GEVLTEMVELTE----A--GCV--GFSQANVPVVDTQVLLRALQYASTFGFTVWLRPLDAFL-G 187 (425)
T ss_pred EEcC------CC----ccCHHHHHHHHh----C--CEE--EEEcCCcccCCHHHHHHHHHHHHhcCCEEEEecCChhh-h
Confidence 1011 00 011222232221 1 211 11122223456778888999999999999999853221 1
Q ss_pred H-------HHHHhcCCCCC--------HHHHHHHcCCCCCCeeEEEeccCCh-hhHHHHHhcC--CeEEEChhh------
Q 019100 251 Q-------VVMDTRKVDHG--------TVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAG--VKVSHCPAS------ 306 (346)
Q Consensus 251 ~-------~~~~~~g~~~~--------~~~~l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g--~~v~~~p~~------ 306 (346)
. ....+.+.... ..+.+.-....+.++++.|.+.... +.+...++.| ++..+||..
T Consensus 188 ~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~ 267 (425)
T PRK07627 188 RGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDV 267 (425)
T ss_pred hCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeHh
Confidence 0 00001111110 1111222223344777777664332 3345556667 555678841
Q ss_pred hcc-----------c---cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 307 AMR-----------M---LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 307 ~~~-----------l---~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
... | .....+.++++.|....++||+.|.+
T Consensus 268 ~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDHaP~~ 311 (425)
T PRK07627 268 DIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVD 311 (425)
T ss_pred HHhccCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCC
Confidence 100 1 01235778899999999999998754
No 62
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=99.81 E-value=7.3e-18 Score=158.59 Aligned_cols=176 Identities=19% Similarity=0.224 Sum_probs=104.3
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|++++ .+ ..++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+....
T Consensus 1 dl~i~~~~v~~~~---~~-~~~~v~I~~g~I~~i~~~~~~-----~~~~~~iDa~G~~v~PG~ID~H~H~~~~~------ 65 (447)
T cd01315 1 DLVIKNGRVVTPD---GV-READIAVKGGKIAAIGPDIAN-----TEAEEVIDAGGLVVMPGLIDTHVHINEPG------ 65 (447)
T ss_pred CEEEECCEEECCC---Cc-eEeEEEEECCEEEEEeCCCCC-----CCCCeEEECCCCEEeccEeeceeccCCCC------
Confidence 4799999999753 22 467999999999999875421 23568999999999999999999986410
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC------CHHHHHHHHHHhCCeEEEecccccC
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQSTMDC 173 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~ 173 (346)
....++... ..+.++..||||+++++.. ....+....+..............
T Consensus 66 -----------------~~~~e~~~~----~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~- 123 (447)
T cd01315 66 -----------------RTEWEGFET----GTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWG- 123 (447)
T ss_pred -----------------ccccccHHH----HHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEE-
Confidence 000111111 2245789999999998621 122222222222111111111100
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecc---cccCCHHHHHHHHHHHHHcCCeEEEEecCC
Q 019100 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ---IMNATDRLLLETRDMAREFKTGIHMHVAEI 246 (346)
Q Consensus 174 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 246 (346)
+ .... .+....++. ..+...++.+++++. .+..+.+.+.++++.++++|+++.+|+...
T Consensus 124 ~--~~~~--------~~~ei~~l~----~~G~~giKv~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~ 185 (447)
T cd01315 124 G--LVPG--------NLDQLRPLD----EAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTGSVLAVHAENP 185 (447)
T ss_pred e--ecCC--------CHHHHHHHH----HcCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEEcCCH
Confidence 0 1110 111222222 222334555554432 223578889999999999999999998543
No 63
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=99.81 E-value=4.2e-18 Score=148.96 Aligned_cols=274 Identities=16% Similarity=0.185 Sum_probs=171.2
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
+..++|+|++|+.-|. . ...||+++||.|.+|+++..+ +.+.++||+.|++|+||.||.|+|+...
T Consensus 13 s~rllikgg~vvN~d~--~--~~aDV~vedGiI~~vg~~l~i-----pgg~~~ida~g~~ViPGgID~Hthlq~p----- 78 (522)
T KOG2584|consen 13 SNRLLIKGGRVVNDDQ--S--FKADVYVEDGIIKEVGENLII-----PGGVKVIDATGKMVIPGGIDPHTHLQMP----- 78 (522)
T ss_pred ccceeeeCCEEEccCC--c--eeeeEEeccCEEEEecccEEc-----CCCceEEecCCcEEecCccCccceeccc-----
Confidence 3468999999997542 2 457999999999999999765 3467899999999999999999999651
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc-----CCHHHHHHHHHHhCCeEEEeccccc
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHVSEMAKAVELLGLRACLVQSTMD 172 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~ 172 (346)
.....+.++++.++ +.++..|+|.+.|+.- ...+++....+.+.-.. +-|
T Consensus 79 ----------------~~G~ts~DdF~~GT----kAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~-----cCD 133 (522)
T KOG2584|consen 79 ----------------FMGMTSVDDFFQGT----KAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKV-----CCD 133 (522)
T ss_pred ----------------cCCccchhhhhccc----HHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCce-----eee
Confidence 11222345555554 4578999999999841 12233322322222233 333
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHH
Q 019100 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (346)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 252 (346)
++....-.|.. ..+++.++++.+ ..+...++.+++....+.++.++|.+++..+++.|...++|+- ....++.
T Consensus 134 yglhv~It~W~----~~v~eem~~l~~--ekGvnsF~~fmayk~~~~v~d~~lye~l~~~~~lgala~vHAE-ngd~iae 206 (522)
T KOG2584|consen 134 YGLHVGITWWS----PSVKEEMEILVK--EKGVNSFKFFMAYKDLYMVRDSELYEALKVCAELGALAMVHAE-NGDAIAE 206 (522)
T ss_pred eeeeEeeeecC----cchHHHHHHHhh--hcCcceEEeeeeeccccccCHHHHHHHHHHHhhcchhheehhh-cchhhhh
Confidence 44322222211 223333333332 2344567888888889999999999999999999999999983 3333322
Q ss_pred HHHh---cCCC-------CCHH--------HHHHHcCCCCCCeeEEEeccCChhh-HHHHHhcCCeEEEChhhhccc-c-
Q 019100 253 VMDT---RKVD-------HGTV--------TFLDKIEFLQNNLLSAHTVWVNHTE-IGLLSRAGVKVSHCPASAMRM-L- 311 (346)
Q Consensus 253 ~~~~---~g~~-------~~~~--------~~l~~~g~l~~~~~~~H~~~~~~~~-i~~l~~~g~~v~~~p~~~~~l-~- 311 (346)
-..+ .|.. +++. +.+.-.....-++.+.|..+.+..+ |.+.++.|..+.--|...... .
T Consensus 207 ~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvhVmsksaa~~Ia~aRk~g~~v~gepita~l~~dg 286 (522)
T KOG2584|consen 207 GQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVVHVMSKSAADAIALARKKGRVVFGEPITASLGTDG 286 (522)
T ss_pred hhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcCCCcceEEEeehhHHHHHHHHHhcCceeecccchhhhcccc
Confidence 2111 1110 1111 1122222233366778988887655 677777676554444321100 0
Q ss_pred -----c--------------------cccHHHHHHcCCcEEEcCCCCCCCC
Q 019100 312 -----G--------------------FAPIKEMLHADICVSLGTDGAPSNN 337 (346)
Q Consensus 312 -----~--------------------~~~~~~~~~~Gv~v~~GTD~~~~~~ 337 (346)
. ..-+..++..|..-+.|||+++++.
T Consensus 287 ~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdhctf~~ 337 (522)
T KOG2584|consen 287 SHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDHCTFTT 337 (522)
T ss_pred hhhccCChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCCCCCCH
Confidence 0 1136789999999999999998664
No 64
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=99.81 E-value=2.3e-18 Score=154.87 Aligned_cols=213 Identities=19% Similarity=0.221 Sum_probs=146.7
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC--cC-------C--------HHHHHHHHHHhCCe
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--GQ-------H--------VSEMAKAVELLGLR 163 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~--~~-------~--------~~~~~~~~~~~g~~ 163 (346)
.++.+|+..+.|+.....++++.+..++..+.++++.||| +.++. +. . .+.+.+.....|++
T Consensus 48 ~~l~~~l~~~~~~~~~~~t~e~l~~~~~~~~~e~~~~Gv~-y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~ 126 (324)
T TIGR01430 48 RDLQDFLAKYDFGVEVLRTEDDFKRLAYEYVEKAAKDGVV-YAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIK 126 (324)
T ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCe
Confidence 4577888888888777788899888889999999999996 44431 10 1 12334445667888
Q ss_pred EEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeccc-ccCCHHHHHHHHHHHHHcCCeEEEE
Q 019100 164 ACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRDMAREFKTGIHMH 242 (346)
Q Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v~~H 242 (346)
..+.....+.. . .+.++...++...+.. ++.+ +++..+. ...+++.+..+++.|+++|+++++|
T Consensus 127 ~~li~~~~r~~---~--------~~~~~~~~~~~~~~~~--~~vv--g~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~H 191 (324)
T TIGR01430 127 SRLILCGMRHK---Q--------PEAAEETLELAKPYKE--QTIV--GFGLAGDERGGPPPDFVRAFAIARELGLHLTVH 191 (324)
T ss_pred EEEEEEEeCCC---C--------HHHHHHHHHHHHhhcc--CcEE--EecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEe
Confidence 75554443211 1 1223333333333322 1223 3333322 3556889999999999999999999
Q ss_pred ecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccC--ChhhHHHHHhcCCeEEEChhhhcccc---c--ccc
Q 019100 243 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKVSHCPASAMRML---G--FAP 315 (346)
Q Consensus 243 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~--~~~~i~~l~~~g~~v~~~p~~~~~l~---~--~~~ 315 (346)
+.|+....+ ..+.+..+|. + .+.|+.++ +++++++++++|+.+++||.||..+. + ..|
T Consensus 192 a~E~~~~~~-----------~~~~~~~~g~---~-ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~p 256 (324)
T TIGR01430 192 AGELGGPES-----------VREALDDLGA---T-RIGHGVRALEDPELLKRLAQENITLEVCPTSNVALGVVKSLAEHP 256 (324)
T ss_pred cCCCCChHH-----------HHHHHHHcCc---h-hcchhhhhccCHHHHHHHHHcCceEEECCcccccccccCCcccCh
Confidence 998732111 1222334444 2 46899999 56789999999999999999998762 3 689
Q ss_pred HHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 316 IKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 316 ~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
+++|+++||+|++|||++.++++ ||++||
T Consensus 257 i~~l~~~Gv~v~igTD~~~~~~~-~l~~e~ 285 (324)
T TIGR01430 257 LRRFLEAGVKVTLNSDDPAYFGS-YLTEEY 285 (324)
T ss_pred HHHHHHCCCEEEECCCCCcccCC-CHHHHH
Confidence 99999999999999999877666 998886
No 65
>PRK07575 dihydroorotase; Provisional
Probab=99.81 E-value=2.6e-18 Score=160.44 Aligned_cols=259 Identities=17% Similarity=0.271 Sum_probs=147.1
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
|++++|+|++|++.++ ....++|+|+||+|.+|++..+. ...+++||++|++|+|||||+|+|+... +
T Consensus 2 ~~~~~i~~~~i~~~~~---~~~~~~I~I~dg~I~~ig~~~~~-----~~~~~vid~~g~~v~PG~ID~H~H~~~~---~- 69 (438)
T PRK07575 2 MMSLLIRNARILLPSG---ELLLGDVLVEDGKIVAIAPEISA-----TAVDTVIDAEGLTLLPGVIDPQVHFREP---G- 69 (438)
T ss_pred cceEEEECCEEECCCC---CEEeeeEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEcccEEEeeeccCCC---C-
Confidence 4468999999997532 23568999999999999875321 1135889999999999999999997531 0
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-----CHHHHHHHHHH----hCCeEEEec
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVEL----LGLRACLVQ 168 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-----~~~~~~~~~~~----~g~~~~~~~ 168 (346)
..+.++....+ +.++..|||++.++... ..+.+.+.... ..++..+..
T Consensus 70 -------------------~~~~e~~~~~~----~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~ 126 (438)
T PRK07575 70 -------------------LEHKEDLFTAS----RACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFFI 126 (438)
T ss_pred -------------------CcCcchHHHHH----HHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEEc
Confidence 01233333333 34678999999998642 12222222222 222221111
Q ss_pred ccccC---------C-CCCCc----cccc--CChHHHHHHHHHHHHHHcCCCCCCeEEEE--------------eeccc-
Q 019100 169 STMDC---------G-EGLPA----SWAV--RTTDDCIQSQKELYAKHHHAADGRIRIWF--------------GIRQI- 217 (346)
Q Consensus 169 ~~~~~---------g-~~~~~----~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~- 217 (346)
..... + .++.. .... ......+.. .+... +..+.... ++..+
T Consensus 127 ~~~~~~l~~l~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~---~~~~~----~~~v~~h~e~~~l~~~~~~~~~g~~~~~ 199 (438)
T PRK07575 127 GATPDNLPELLTANPTCGIKIFMGSSHGPLLVDEEAALER---IFAEG----TRLIAVHAEDQARIRARRAEFAGISDPA 199 (438)
T ss_pred cccccCHHHHHHhhCCeEEEEEEeeCCCCcccCcHHHHHH---HHHhC----CCEEEEeCcChHHHHhhhHhhccCcCcc
Confidence 00000 0 00000 0000 000111111 01110 01111100 11000
Q ss_pred ----ccCC---HHHHHHHHHHHHHcCCeEEE-EecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhh
Q 019100 218 ----MNAT---DRLLLETRDMAREFKTGIHM-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE 289 (346)
Q Consensus 218 ----~~~~---~~~l~~~~~~a~~~g~~v~~-H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~ 289 (346)
...+ .+.+.+++++|++.|.++++ |+. +...++.+.++. .+.+...++ .|...+++++
T Consensus 200 ~~~~~~p~~aE~~av~~~~~la~~~g~~lhi~HiS-t~~~v~~i~~~k------------~~~vt~ev~-phhL~l~~~~ 265 (438)
T PRK07575 200 DHSQIQDEEAALLATRLALKLSKKYQRRLHILHLS-TAIEAELLRQDK------------PSWVTAEVT-PQHLLLNTDA 265 (438)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHCCCEEEEECC-CHHHHHHHHHhc------------CCCEEEEEc-hhhheeCHHH
Confidence 1112 25677889999999999999 887 665555443311 123333444 4558888888
Q ss_pred HHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCCC
Q 019100 290 IGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN 337 (346)
Q Consensus 290 i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~~ 337 (346)
+. +.+...-++|. ++. .+..++.+++++|+.++++||+.|.+.
T Consensus 266 ~~---~~~~~~k~~PP--LR~~~d~~~L~~~l~~G~id~i~sDh~p~~~ 309 (438)
T PRK07575 266 YE---RIGTLAQMNPP--LRSPEDNEALWQALRDGVIDFIATDHAPHTL 309 (438)
T ss_pred Hh---CCCceEEEeCC--CCCHHHHHHHHHHHhCCCCCEEecCCCCCCH
Confidence 64 46777788885 444 667899999999999999999999763
No 66
>PRK09236 dihydroorotase; Reviewed
Probab=99.80 E-value=4.4e-18 Score=159.42 Aligned_cols=93 Identities=16% Similarity=0.264 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeE---EEeccCChhhHHHHHhcCCeE
Q 019100 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLS---AHTVWVNHTEIGLLSRAGVKV 300 (346)
Q Consensus 224 ~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~---~H~~~~~~~~i~~l~~~g~~v 300 (346)
.+.++.++|++++.++++|..++...++.+.++ ...+.++.. .|..+++++++.. .|..+
T Consensus 217 av~~~~~la~~~~~~~hi~h~st~~~~~~i~~~--------------~~~g~~vt~e~~~H~l~l~~~~~~~---~~~~~ 279 (444)
T PRK09236 217 SSSLAVSLAKKHGTRLHVLHISTAKELSLFENG--------------PLAEKRITAEVCVHHLWFDDSDYAR---LGNLI 279 (444)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHH--------------HHCCCCEEEEEchhhhhcCHHHHhc---cCceE
Confidence 355678888888999998877776655544321 112334433 5778899888653 58889
Q ss_pred EEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCC
Q 019100 301 SHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 301 ~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
.+||. ++. .+..++.++++.|+.+++|||+.|.
T Consensus 280 ~~~Pp--lr~~~~~~~l~~~l~~G~i~~igtDh~p~ 313 (444)
T PRK09236 280 KCNPA--IKTASDREALRQALADDRIDVIATDHAPH 313 (444)
T ss_pred EECCC--CCCHHHHHHHHHHHhCCCCcEEECCCCCC
Confidence 99995 444 6678999999999999999999875
No 67
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=99.80 E-value=2.1e-17 Score=150.88 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeE
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKV 300 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v 300 (346)
..+.+++++++|+++|+++..|..++...++.. .+.|.. .++| .++.+..+.+++.|+.+
T Consensus 207 ~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a--------------~~~Gv~----~~E~--~~t~e~a~~~~~~G~~v 266 (376)
T TIGR02318 207 GLANRSEIAALARARGIPLASHDDDTPEHVAEA--------------HDLGVT----ISEF--PTTLEAAKEARSLGMQI 266 (376)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHH--------------HHCCCC----hhcc--CCCHHHHHHHHHcCCeE
Confidence 478899999999999999999997766533322 233442 2244 37888899999999998
Q ss_pred EEChhhhcc--c-cccccHHHHHHcCCcEEEcCCCCC
Q 019100 301 SHCPASAMR--M-LGFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 301 ~~~p~~~~~--l-~~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
..|...-.+ . .+..++.++++.|+.++++||+.|
T Consensus 267 ~~~~p~~~r~~~~~~~~~l~~~~~~G~~~~l~SD~~p 303 (376)
T TIGR02318 267 LMGAPNIVRGGSHSGNLSARELAHEGLLDVLASDYVP 303 (376)
T ss_pred EECCccccccccccchHHHHHHHHCCCcEEEEcCCCc
Confidence 877421111 1 346789999999999999999965
No 68
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.80 E-value=4e-18 Score=149.59 Aligned_cols=231 Identities=23% Similarity=0.329 Sum_probs=154.9
Q ss_pred ccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC--------CHHHH
Q 019100 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEM 153 (346)
Q Consensus 82 fID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~--------~~~~~ 153 (346)
|||+|+|+....+++........ | ....++++.+........++++.|||++.++... ..+..
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~ 71 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELK-E--------AEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAV 71 (275)
T ss_pred CcccchhhHHHHHccCCCccccc-c--------ccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHH
Confidence 79999999887666544321111 1 3456677777777888899999999999987532 23556
Q ss_pred HHHHHHh-CCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeccccc---CCHHHHHHHH
Q 019100 154 AKAVELL-GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMN---ATDRLLLETR 229 (346)
Q Consensus 154 ~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~ 229 (346)
.+.+... +++........+.. ... .+.......+++..+.. ....++.+++... .+.+.+++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~i~~~~~----~~~~gi~~~~~~~~~~~~~~~~~~~~ 139 (275)
T cd01292 72 AEAARASAGIRVVLGLGIPGVP----AAV----DEDAEALLLELLRRGLE----LGAVGLKLAGPYTATGLSDESLRRVL 139 (275)
T ss_pred HHHHHHhcCeeeEEeccCCCCc----ccc----chhHHHHHHHHHHHHHh----cCCeeEeeCCCCCCCCCCcHHHHHHH
Confidence 6677776 77776654443211 000 11222223333333322 1112344443333 3788999999
Q ss_pred HHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhcc
Q 019100 230 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 309 (346)
Q Consensus 230 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~ 309 (346)
+.|+++++++++|+.+...... ...+.++.... +.+.++.|+..+++++++++++.|+.+.+||.++..
T Consensus 140 ~~a~~~~~~i~~H~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 208 (275)
T cd01292 140 EEARKLGLPVVIHAGELPDPTR----------ALEDLVALLRL-GGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYL 208 (275)
T ss_pred HHHHHcCCeEEEeeCCcccCcc----------CHHHHHHHHhc-CCCEEEECCccCCHHHHHHHHHcCCeEEECCccccc
Confidence 9999999999999987653200 02223333222 668899999999999999999999999999988754
Q ss_pred c----cccccHHHHHHcCCcEEEcCCCCCCCCCCCCCCC
Q 019100 310 M----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIGPF 344 (346)
Q Consensus 310 l----~~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~ 344 (346)
. ....+++.+++.|+++++|||+++.++..+|+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~~~~~ 247 (275)
T cd01292 209 LGRDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDLLAL 247 (275)
T ss_pred ccCCcCCcccHHHHHHCCCcEEEecCCCCCCCCCCHHHH
Confidence 3 4567999999999999999999876555566544
No 69
>PRK07369 dihydroorotase; Provisional
Probab=99.78 E-value=8.3e-17 Score=148.88 Aligned_cols=265 Identities=15% Similarity=0.103 Sum_probs=143.9
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
|.+++|+|++|+++.+. ....++|+|+||+|++|++.... +..+.++||++|++|+|||||+|+|+... +
T Consensus 1 ~~~~~i~n~~v~d~~~~--~~~~~~v~I~dg~I~~i~~~~~~----~~~~~~~iDa~G~~vlPG~ID~H~H~~~~---~- 70 (418)
T PRK07369 1 MSNELLQQVRVLDPVSN--TDRIADVLIEDGKIQAIEPHIDP----IPPDTQIIDASGLILGPGLVDLYSHSGEP---G- 70 (418)
T ss_pred CCCEEEeCeEEECCCCC--cccceeEEEECCEEEEecCCccc----CCCCCEEEECCCCEEecCEEecccccCCC---C-
Confidence 45689999999954322 22568999999999999865321 12346899999999999999999998541 0
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-----CHHHHHHHHHHhC----CeEEEec
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLG----LRACLVQ 168 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-----~~~~~~~~~~~~g----~~~~~~~ 168 (346)
....++.... .+.++..|+|++.++++. ..+.+........ +...+..
T Consensus 71 -------------------~~~~e~~~s~----~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~ 127 (418)
T PRK07369 71 -------------------FEERETLASL----AAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWG 127 (418)
T ss_pred -------------------cCCCccHHHH----HHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEE
Confidence 0011222222 256788999999998742 1222222222211 1111111
Q ss_pred ccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChh
Q 019100 169 STMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (346)
Q Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 248 (346)
.+ ...... ..+.+..++.+. |-.. +. .+....+...+.++++.+++.|..+.+|+.+..-
T Consensus 128 ~~-------~~~~~~----~~~~ei~~l~~~------Gv~~--f~-~~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l 187 (418)
T PRK07369 128 AL-------TLGGQG----KQLTELAELAAA------GVVG--FT-DGQPLENLALLRRLLEYLKPLGKPVALWPCDRSL 187 (418)
T ss_pred EE-------eeCCCC----ccHhhHHHHHHC------CCEE--EE-CCCcCCCHHHHHHHHHHHHhcCCeEEEecCChhh
Confidence 11 110000 112222222211 2111 11 1222345667888999999999999999854331
Q ss_pred hHH-H------HHHhcCCCCC--------HHHHHHHcCCCCCCeeEEEeccCCh-hhHHHHHhcC--CeEEEChhh----
Q 019100 249 ENQ-V------VMDTRKVDHG--------TVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAG--VKVSHCPAS---- 306 (346)
Q Consensus 249 ~~~-~------~~~~~g~~~~--------~~~~l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g--~~v~~~p~~---- 306 (346)
.. . ...+.+...+ ..+.+.-....+.+.++.|.+.... +.+...++.| ++..+||..
T Consensus 188 -~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~ 266 (418)
T PRK07369 188 -AGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRISTARSVELIAQAKARGLPITASTTWMHLLLD 266 (418)
T ss_pred -hhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhcc
Confidence 10 0 0011111111 1112222223345777777664322 3345556666 566788842
Q ss_pred hccc---c-------------ccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 307 AMRM---L-------------GFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 307 ~~~l---~-------------~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
+..+ . ....+.+.++.|..-.++||+.|.+
T Consensus 267 ~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~ 312 (418)
T PRK07369 267 TEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYT 312 (418)
T ss_pred HHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCC
Confidence 1000 0 1234567888999999999999864
No 70
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=99.78 E-value=2.5e-17 Score=154.18 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=99.3
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhh--h-----hhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--Q-----QFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~--~-----~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
.+++|+|++|++.. ..+ ..++|.|+||||++|++..... . ...+...++||++|++|+|||||+|+|+..
T Consensus 68 ~DlVI~Ng~ViD~~--~gi-~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~ 144 (572)
T PRK13309 68 LDLVITNVTIVDAR--LGV-IKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLIS 144 (572)
T ss_pred CCEEEECeEEEcCC--CCE-EEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCC
Confidence 46999999999632 233 4689999999999998753210 0 001224689999999999999999999754
Q ss_pred cccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc------------C---CHHHHHHH
Q 019100 92 QLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG------------Q---HVSEMAKA 156 (346)
Q Consensus 92 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~------------~---~~~~~~~~ 156 (346)
|... ..++..||||+.+++. . ....+.+.
T Consensus 145 ----------------------------P~~~--------~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~ 188 (572)
T PRK13309 145 ----------------------------PQQA--------YHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRS 188 (572)
T ss_pred ----------------------------cchH--------HHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 1110 3588999999996421 1 12233333
Q ss_pred HHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC
Q 019100 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 236 (346)
Q Consensus 157 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g 236 (346)
++...+...+. +.+... . +.+..++++ . |-+ ++..+..+..+++.+.++++.|++++
T Consensus 189 a~~~pvn~g~~------gkg~~~-----~----~~~l~el~~---a---Ga~--gfk~~~d~g~t~~~L~~aLe~A~~~g 245 (572)
T PRK13309 189 IEGLPVNVGIL------GKGNSY-----G----RGPLLEQAI---A---GVA--GYKVHEDWGATAAALRHALRVADEVD 245 (572)
T ss_pred hccCCcCEEEE------cCCCCC-----C----HHHHHHHHh---c---CcE--EEEecCcCCcCHHHHHHHHHHHHhcC
Confidence 33332222111 111110 1 111122211 1 222 23333334558899999999999999
Q ss_pred CeEEEEec
Q 019100 237 TGIHMHVA 244 (346)
Q Consensus 237 ~~v~~H~~ 244 (346)
.++.+|+.
T Consensus 246 v~VaiH~d 253 (572)
T PRK13309 246 IQVAVHTD 253 (572)
T ss_pred CEEEEeCC
Confidence 99999953
No 71
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.78 E-value=7.6e-17 Score=148.91 Aligned_cols=258 Identities=18% Similarity=0.238 Sum_probs=148.4
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|++++. ..+++|+|++|+|++|++..+.+ .....++||++|++|+|||||+|+|+.... ...
T Consensus 2 ~~i~~~~v~~~~~----~~~~~v~i~~g~I~~v~~~~~~~---~~~~~~~id~~g~~v~PG~id~H~H~~~~~----~~~ 70 (387)
T cd01308 2 TLIKNAEVYAPEY----LGKKDILIAGGKILAIEDQLNLP---GYENVTVVDLHGKILVPGFIDQHVHIIGGG----GEG 70 (387)
T ss_pred EEEECcEEeCCCC----ccceEEEEECCEEEEEeCCcccc---cCCCCeEEECCCCEEccCeeehhhCccccc----CCC
Confidence 5899999998542 25789999999999999765321 113468999999999999999999996410 000
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc-----CCHH---HHHHHHHHhCCeEEEeccccc
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHVS---EMAKAVELLGLRACLVQSTMD 172 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~-----~~~~---~~~~~~~~~g~~~~~~~~~~~ 172 (346)
.. ...+++ ....+++..|+||++|++. ...+ ...+.+.+.|++.+.+...++
T Consensus 71 -~~------------~~~~~~-------~~~~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~ 130 (387)
T cd01308 71 -GP------------STRTPE-------VTLSDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSYE 130 (387)
T ss_pred -cc------------cccCHH-------HHHHHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccC
Confidence 00 011111 2345788999999999862 1222 335555778999987655443
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCC------eEEEEecCC
Q 019100 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT------GIHMHVAEI 246 (346)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~~~~ 246 (346)
.. .. ...+.++.....++.+.. .+ ..............+.+.++.++++..+. .+++|..+.
T Consensus 131 ~~----~~----~~~~~~~~~~~~i~~~~~--~g--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~ 198 (387)
T cd01308 131 VP----TR----TITGSIRKDLLLIDKVIG--VG--EIAISDHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDG 198 (387)
T ss_pred CC----Cc----CchhhHHHHHHHHHHhcC--cc--eEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc
Confidence 21 11 122333322333444432 12 11122222234456677777777776443 578888765
Q ss_pred hhhHHHHHHhcCCCCCHHHHHHHcCC-CCCCeeEEEeccCChhh---HHHHHhcCCeEEEChhhhcc-c-c----ccccH
Q 019100 247 PYENQVVMDTRKVDHGTVTFLDKIEF-LQNNLLSAHTVWVNHTE---IGLLSRAGVKVSHCPASAMR-M-L----GFAPI 316 (346)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~~~l~~~g~-l~~~~~~~H~~~~~~~~---i~~l~~~g~~v~~~p~~~~~-l-~----~~~~~ 316 (346)
....+. ..+++++.|. +. +++..|.. .+.++ ....++.|..+.+.-.+... + . ....+
T Consensus 199 ~~~~~~----------i~~~~~~~G~~~~-~~~~~~~~-~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~~~~~~~~~~~l 266 (387)
T cd01308 199 KRALSP----------IFELIEETEIPIT-QFLPTHIN-RTAPLFEQGVEFAKMGGTIDLTSSIDPQFRKEGEVRPSEAL 266 (387)
T ss_pred hHHHHH----------HHHHHHhcCCCcc-eeECCccc-CCHHHHHHHHHHHHcCCcEEEECCCCccccccCccChHHHH
Confidence 433332 3345555565 22 33433333 44442 33455567655444322111 1 1 23566
Q ss_pred HHHHHcCC---cEEEcCCCC
Q 019100 317 KEMLHADI---CVSLGTDGA 333 (346)
Q Consensus 317 ~~~~~~Gv---~v~~GTD~~ 333 (346)
+.++++|+ ++.++||+.
T Consensus 267 ~~~~~~g~~~d~i~l~TD~~ 286 (387)
T cd01308 267 KRLLEQGVPLERITFSSDGN 286 (387)
T ss_pred HHHHHhCCCCCcEEEEECCC
Confidence 88999997 489999973
No 72
>PRK02382 dihydroorotase; Provisional
Probab=99.77 E-value=1.8e-16 Score=148.46 Aligned_cols=265 Identities=16% Similarity=0.186 Sum_probs=145.4
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~ 97 (346)
|.+++|+|++|++.+ .+ ..++|+|+||+|++|++..+. ....++||++|++|+|||||+|+|+....
T Consensus 1 ~~dl~i~n~~v~~~~---~~-~~~~v~I~dg~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~ID~H~H~~~~g---- 67 (443)
T PRK02382 1 MRDALLKDGRVYYNN---SL-QPRDVRIDGGKITAVGKDLDG-----SSSEEVIDARGMLLLPGGIDVHVHFREPG---- 67 (443)
T ss_pred CceEEEECCEEEeCC---Cc-eEEEEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEcCCEeeeeeeccCCC----
Confidence 357899999999732 23 468999999999999764321 12358999999999999999999975410
Q ss_pred cCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC-----HHHHHHHHHHhCCeEEEeccccc
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMD 172 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~ 172 (346)
....++.. .....++..|||++.+++... .+.+........-+......+.
T Consensus 68 -------------------~~~~e~~~----~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~- 123 (443)
T PRK02382 68 -------------------YTHKETWY----TGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGIN- 123 (443)
T ss_pred -------------------CCchhhHH----HHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEE-
Confidence 00112211 123567789999999986321 1222222222222222211111
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEee-cccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHH
Q 019100 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGI-RQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (346)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 251 (346)
+ .... . +.+...+.+. .. .+.-+++... .+....+.+.+.++++.+++.|.++.+|+..... ..
T Consensus 124 -~-~~~~-----~----~~~l~~l~~~-gv--~~~gkv~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~-~~ 188 (443)
T PRK02382 124 -G-GVTG-----N----WDPLESLWER-GV--FALGEIFMADSTGGMGIDEELFEEALAEAARLGVLATVHAEDEDL-FD 188 (443)
T ss_pred -e-eecc-----c----hhhHHHHHhc-Cc--cceeEEEEEecCCCcccCHHHHHHHHHHHHhcCCeEEEecCCHHH-HH
Confidence 1 0000 0 1122223221 11 1111333322 1223456788999999999999999999854322 11
Q ss_pred HHHHh-cC-------CCCCH--------HHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhh----cc--
Q 019100 252 VVMDT-RK-------VDHGT--------VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASA----MR-- 309 (346)
Q Consensus 252 ~~~~~-~g-------~~~~~--------~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~----~~-- 309 (346)
..... -| ....+ .+.+......+.+.++.|.. +.+.++.+++..+...+||..- ..
T Consensus 189 ~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi~h~s--s~~~~~~i~~~~vt~ev~ph~L~l~~~~~~ 266 (443)
T PRK02382 189 ELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHIAHIS--TPEGVDAARREGITCEVTPHHLFLSRRDWE 266 (443)
T ss_pred HhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEEEECC--CHHHHHHHHHCCcEEEEchhhhhcCHHHHh
Confidence 11100 00 00000 11222222234466666655 3455777777667888888521 00
Q ss_pred -ccc----ccc---------HHHHHHcCCcEEEcCCCCCCC
Q 019100 310 -MLG----FAP---------IKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 310 -l~~----~~~---------~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
+.. .+| +-+.++.|+..+++||+.|.+
T Consensus 267 ~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~ 307 (443)
T PRK02382 267 RLGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHT 307 (443)
T ss_pred ccCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCC
Confidence 100 123 344577899999999999854
No 73
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.76 E-value=5.2e-17 Score=147.08 Aligned_cols=235 Identities=17% Similarity=0.152 Sum_probs=136.6
Q ss_pred eEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCch
Q 019100 42 GVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEE 121 (346)
Q Consensus 42 ~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (346)
+|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+....... ..+
T Consensus 1 ~i~i~~g~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~iD~H~H~~~~g~~~--------------------~~~-- 53 (338)
T cd01307 1 DVAIENGKIAAVGAALAA-----PAATQIVDAGGCYVSPGWIDLHVHVYQGGTRY--------------------GDR-- 53 (338)
T ss_pred CEEEECCEEEEccCCCCC-----CCCCeEEECCCCEEecCeEEeeecCCCCCccc--------------------CCC--
Confidence 589999999999986431 22468999999999999999999996621100 000
Q ss_pred HHHHHHHHHHHHHHhcCceEeeecCcC---CHHHHHHHH-HHhCCeEEEecccccCCCCCCcccccCChHHH-HHHHHHH
Q 019100 122 DSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAV-ELLGLRACLVQSTMDCGEGLPASWAVRTTDDC-IQSQKEL 196 (346)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTt~~d~~~~---~~~~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~l 196 (346)
..+.++..|+||+.+++.. ..+.+.+.. ...+.+......+...|...++. .. ..... .+...+.
T Consensus 54 --------~~~~a~~~GvTtvvd~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~-~~-~~~~~~~~~l~~~ 123 (338)
T cd01307 54 --------PDMIGVKSGVTTVVDAGSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDE-LP-DPDNIDEDAVVAA 123 (338)
T ss_pred --------HhHHHHcCceeEEEeCCCCCCCCHHHHHHHHHHhhhceEEEEEeeeccccccccc-cC-ChhHCCHHHHHHH
Confidence 1134688999999998632 233333333 34444332221111112111111 11 11111 1122222
Q ss_pred HHHHcCCCCCC--eEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCC
Q 019100 197 YAKHHHAADGR--IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQ 274 (346)
Q Consensus 197 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~ 274 (346)
++ ...++. ++.++..+.........++..++++++.|+++.+|+.+...+...+.. . +.
T Consensus 124 ~~---e~~~gi~gik~~~~~~~~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~-------------~---l~ 184 (338)
T cd01307 124 AR---EYPDVIVGLKARASKSVVGEWGIKPLELAKKIAKEADLPLMVHIGSPPPILDEVVP-------------L---LR 184 (338)
T ss_pred HH---HCcCcEEEEEEEeecccccccCCcHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHH-------------H---hc
Confidence 22 222232 455554444333334448889999999999999999876654443322 1 12
Q ss_pred CCeeEEEeccCCh-----------hhHHHHHhcCCeEEEChhhhccccccccHHHHHHcCC-cEEEcCCCCC
Q 019100 275 NNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADI-CVSLGTDGAP 334 (346)
Q Consensus 275 ~~~~~~H~~~~~~-----------~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~Gv-~v~~GTD~~~ 334 (346)
....+.|++..+. +.+..++++|+.+.++.... . ....+.+++++.|+ +..++||.+.
T Consensus 185 ~g~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~~-~-~~~~~~~~l~~~G~~~~~lstD~~~ 254 (338)
T cd01307 185 RGDVLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGTA-S-FSFRVARAAIAAGLLPDTISSDIHG 254 (338)
T ss_pred CCCEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCCC-c-hhHHHHHHHHHCCCCCeeecCCccc
Confidence 2346689888654 56788889998876553110 0 12245678999997 6789999864
No 74
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.75 E-value=3e-16 Score=146.60 Aligned_cols=241 Identities=17% Similarity=0.179 Sum_probs=135.3
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhh--h---hhcCCCCeEEecCCCEEeecccccccCCcccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--Q---QFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~--~---~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 93 (346)
.+++|+|++|++. . .+ ...+|.|+||||++|++..... . ...+.+.++||++|++|+|||||+|+|+..
T Consensus 67 mDlVI~Na~Vvd~--~-gi-~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~-- 140 (568)
T PRK13207 67 VDTVITNALILDH--W-GI-VKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFIC-- 140 (568)
T ss_pred CCEEEECeEEECC--C-Ce-EEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCcc--
Confidence 4689999999964 2 23 4689999999999998742210 0 001235689999999999999999999754
Q ss_pred cccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-----C----------HHHHHHHHH
Q 019100 94 AKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----H----------VSEMAKAVE 158 (346)
Q Consensus 94 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-----~----------~~~~~~~~~ 158 (346)
+.. ...++..||||+.+++.. . ...+.+...
T Consensus 141 --------------------------P~~--------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~ 186 (568)
T PRK13207 141 --------------------------PQQ--------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAAD 186 (568)
T ss_pred --------------------------ccH--------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhh
Confidence 111 146789999999997311 0 111122211
Q ss_pred HhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCe
Q 019100 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 238 (346)
Q Consensus 159 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 238 (346)
...+...+ ...+ . ...++...++++ .+..-+++ +..+..+++.+.++++.|+++|.+
T Consensus 187 ~~pin~g~----~g~g--~---------~~~~~~L~e~i~----aGA~gfKi----~~d~g~t~~~l~~aL~~A~~~gv~ 243 (568)
T PRK13207 187 AFPMNIGF----LGKG--N---------ASLPEALEEQIE----AGAIGLKL----HEDWGATPAAIDNCLSVADEYDVQ 243 (568)
T ss_pred cCCceEEE----EcCC--C---------cccHHHHHHHHH----cCCCEEee----cCCCCCCHHHHHHHHHHHHHhCCE
Confidence 11111100 0000 0 011222222222 12222332 222345889999999999999999
Q ss_pred EEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEec----cCChhhHHHHHhcCCeE-EEChhh----h--
Q 019100 239 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV----WVNHTEIGLLSRAGVKV-SHCPAS----A-- 307 (346)
Q Consensus 239 v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~----~~~~~~i~~l~~~g~~v-~~~p~~----~-- 307 (346)
+.+|+...... . .++..-+ ...+...++.|.. ...++-++.+++.|+.- ++.|.- |
T Consensus 244 V~iHa~tlne~-G-----------~~e~t~~-a~~g~~iH~~H~egaggghapdii~~~~~~~v~p~st~pt~p~~~~~~ 310 (568)
T PRK13207 244 VAIHTDTLNES-G-----------FVEDTIA-AFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSSTNPTRPYTVNTI 310 (568)
T ss_pred EEEeCCCcccc-h-----------HHHHHHH-hcCCCEEEEEeecCCCcCCchHHHHHhhcCCCccCCCCCCCCCccCch
Confidence 99999533211 0 1121111 1223333344433 13456678888888653 233321 0
Q ss_pred -----cc-----c-ccc----------------ccHHHHHHcCCcEEEcCCCCCC
Q 019100 308 -----MR-----M-LGF----------------APIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 308 -----~~-----l-~~~----------------~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
+. | ... ..=.-|++.|+.+.+|||++..
T Consensus 311 ~e~~~m~m~~h~l~~~~~~d~~~a~srir~~t~~ae~~l~d~Ga~~~~~SD~p~~ 365 (568)
T PRK13207 311 DEHLDMLMVCHHLDPSIPEDVAFAESRIRRETIAAEDILHDLGAISMISSDSQAM 365 (568)
T ss_pred hhhcCeEEeecCCCCCCcchhhhhhhhccceeecccchhhhCCCEEEecCCcccc
Confidence 00 1 000 1113489999999999999853
No 75
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.75 E-value=3.1e-17 Score=149.40 Aligned_cols=254 Identities=14% Similarity=0.166 Sum_probs=136.7
Q ss_pred CCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHH
Q 019100 47 QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIS 126 (346)
Q Consensus 47 ~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (346)
||+|++|++..+. +..+++||++|++|+|||||+|+|++...........+.. +...+..+.+...+.+..
T Consensus 1 ~gkI~~i~~~~~~-----~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~----e~~~~~~p~~~~~d~~~~ 71 (359)
T cd01309 1 DGKIVAVGAEITT-----PADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDAN----EETDPVTPHVRAIDGINP 71 (359)
T ss_pred CCEEEEEcCCCCC-----CCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCcc----ccCCCCCceeEeecccCC
Confidence 6999999987542 2357899999999999999999999875543322211110 011122222233333333
Q ss_pred HHHHHHHHHhcCceEeeecCcCC----------------HHHHHHHHHHhCCeEEEeccccc-CCC-CCCcccccC---C
Q 019100 127 TLLCGIELIHSGVTCFAEAGGQH----------------VSEMAKAVELLGLRACLVQSTMD-CGE-GLPASWAVR---T 185 (346)
Q Consensus 127 ~~~~~~~~l~~GvTt~~d~~~~~----------------~~~~~~~~~~~g~~~~~~~~~~~-~g~-~~~~~~~~~---~ 185 (346)
....+..+.+.|||++....+.. .+++. ......+...++..... ++. ...+..... .
T Consensus 72 ~~~~~~~a~~~GvT~~~v~p~~~~~~gg~~~~i~~~~~~~~~~~-~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~~~ 150 (359)
T cd01309 72 DDEAFKRARAGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMF-IKAPAGLKMALGENPKRVYGGKGKEPATRMGVAAL 150 (359)
T ss_pred CCHhHHHHHhcCceEEEecCCCCCcccceEEEEECCCCCHHHhc-ccCCceeEEecCCCCcccccccCCCccchHHHHHH
Confidence 33455678899999997554211 11100 01111122111100000 000 000000000 0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHH
Q 019100 186 TDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT 265 (346)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~ 265 (346)
..+.+.++.+..+......+ .....+. ....++.+.+.++.. +++.+|+.... +++. .++
T Consensus 151 lr~~~~~a~~y~~~~~~~~~-------~~~~~~~-~d~~l~~l~~~~~~~-~~v~vHa~~~~-~i~~----------~l~ 210 (359)
T cd01309 151 LRDAFIKAQEYGRKYDLGKN-------AKKDPPE-RDLKLEALLPVLKGE-IPVRIHAHRAD-DILT----------AIR 210 (359)
T ss_pred HHHHHHHHHHHHHHhhhhhh-------cccCCCC-CCccHHHHHHHHcCC-eeEEEEeCCHH-HHHH----------HHH
Confidence 11111122222111111000 0000001 122355555555533 89999997533 2222 345
Q ss_pred HHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccc------cccccHHHHHHcC-CcEEEcCCCCC
Q 019100 266 FLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM------LGFAPIKEMLHAD-ICVSLGTDGAP 334 (346)
Q Consensus 266 ~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l------~~~~~~~~~~~~G-v~v~~GTD~~~ 334 (346)
+.+++++ +.+++|+... .+.+++|++.|+.+++||..+... .+..+++.++++| |++++|||++.
T Consensus 211 ~~~e~g~---~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~~~~~~~~~~~~~~~l~~aGGv~valgsD~~~ 282 (359)
T cd01309 211 IAKEFGI---KITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGGVAFAISSDHPV 282 (359)
T ss_pred HHHHcCC---CEEEECchhH-HHHHHHHHHcCCCEEECccccccccHHHhhcchhhHHHHHHcCCceEEEECCCCC
Confidence 5566665 5788999987 778899999999999999765321 3567889999998 99999999974
No 76
>PRK09059 dihydroorotase; Validated
Probab=99.73 E-value=1.2e-15 Score=141.86 Aligned_cols=269 Identities=14% Similarity=0.108 Sum_probs=140.8
Q ss_pred CcceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccc
Q 019100 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (346)
Q Consensus 17 ~~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g 96 (346)
|+.+++|+|++|++.++ .....++|+|+||+|++|++..+.. . .+...++||++|++|+|||||+|+|+....
T Consensus 1 ~~~~~~i~n~~v~~~~~--~~~~~~~v~I~~G~I~~i~~~~~~~-~-~~~~~~viDa~G~~v~PG~ID~HvH~~~~~--- 73 (429)
T PRK09059 1 MMRPILLANARIIDPSR--GLDEIGTVLIEDGVIVAAGKGAGNQ-G-APEGAEIVDCAGKAVAPGLVDARVFVGEPG--- 73 (429)
T ss_pred CCcCEEEEeeEEECCCC--CcccceEEEEECCEEEEecCccccc-c-CCCCCeEEECCCCEEeccEEecccccCCCC---
Confidence 35679999999997543 3335689999999999998653210 0 012458999999999999999999985410
Q ss_pred ccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC-----HHHHHHHHHHh----CCeEEEe
Q 019100 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELL----GLRACLV 167 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-----~~~~~~~~~~~----g~~~~~~ 167 (346)
.. ..++. ....+.++..|||++.+++... .+.+....... .+.....
T Consensus 74 ----~~----------------~~e~~----~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~ 129 (429)
T PRK09059 74 ----AE----------------HRETI----ASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPA 129 (429)
T ss_pred ----ch----------------hhhhH----HHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEE
Confidence 00 01111 1122457789999999986421 12222222211 1222111
Q ss_pred cccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCCh
Q 019100 168 QSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (346)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 247 (346)
..+ ..... .+.+.+...+.+. |... +...+....+...+.++++.+++.|..+.+|+-...
T Consensus 130 ~~~-------~~~~~----~~~l~e~~~l~~~------Gv~~--f~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~ 190 (429)
T PRK09059 130 AAI-------TKGLA----GEEMTEFGLLRAA------GAVA--FTDGRRSVANTQVMRRALTYARDFDAVIVHETRDPD 190 (429)
T ss_pred eEE-------ecCCC----CcchHHHHHHHhc------CcEE--EecCCcccCCHHHHHHHHHHHHhcCCEEEEecCChh
Confidence 111 11000 1112222222111 2111 111112233566788899999999999999984432
Q ss_pred hhHH-------HHHHhcCCCCC--------HHHHHHHcCCCCCCeeEEEeccCCh-hhHHHHHhcC--CeEEEChhh---
Q 019100 248 YENQ-------VVMDTRKVDHG--------TVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAG--VKVSHCPAS--- 306 (346)
Q Consensus 248 ~~~~-------~~~~~~g~~~~--------~~~~l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g--~~v~~~p~~--- 306 (346)
. .. ......+...+ ..+.+.-....+.+.++.|.+.... +.+..+++.| ++..+||.-
T Consensus 191 l-~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phhL~l 269 (429)
T PRK09059 191 L-GGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAESAEALRRAKDRGLKVTAGVSINHLSL 269 (429)
T ss_pred h-hcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCHHHHHHHHHHHHCCCCEEEeecHHHHhc
Confidence 1 10 00001111111 1111222223344666666554322 3355556677 445677741
Q ss_pred -hc---ccc-------------ccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 307 -AM---RML-------------GFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 307 -~~---~l~-------------~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
+. ... ....+-+.+..|..-.++||+.|.+
T Consensus 270 ~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~ 316 (429)
T PRK09059 270 NENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQD 316 (429)
T ss_pred cHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCC
Confidence 00 000 0123456677888888999999864
No 77
>PRK09061 D-glutamate deacylase; Validated
Probab=99.73 E-value=8.5e-16 Score=145.58 Aligned_cols=230 Identities=17% Similarity=0.155 Sum_probs=132.9
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
.+++|+|++|++..+ ......+|+|+||+|++|++.. ..+.++||++|++|+|||||+|+|+...
T Consensus 19 ~~~li~~~~vid~~~--~~~~~~~v~I~~G~I~~ig~~~-------~~~~~viD~~g~~v~PG~ID~H~H~~~~------ 83 (509)
T PRK09061 19 YDLVIRNGRVVDPET--GLDAVRDVGIKGGKIAAVGTAA-------IEGDRTIDATGLVVAPGFIDLHAHGQSV------ 83 (509)
T ss_pred CCEEEECcEEEeCCC--CeeccceEEEECCEEEEecCCC-------CCCCeEEeCCCCEEecCeEeeeeCCCCC------
Confidence 468999999997543 2334579999999999998743 1245899999999999999999997430
Q ss_pred CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC-c-CCHHHHHHHHHHhCC--eEEEeccc----
Q 019100 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-G-QHVSEMAKAVELLGL--RACLVQST---- 170 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~-~-~~~~~~~~~~~~~g~--~~~~~~~~---- 170 (346)
.. ...++..||||+.++. + .......+.....+. ........
T Consensus 84 ---------------------~~---------~~~~~~~GvTtvv~~~~~~~p~~~~~~~~~~~~~~vn~~~~~~~~~~R 133 (509)
T PRK09061 84 ---------------------AA---------YRMQAFDGVTTALELEAGVLPVARWYAEQAGEGRPLNYGASVGWTPAR 133 (509)
T ss_pred ---------------------cc---------chhhccCCceeEEeeccCCCCHHHHHHHHHhcCCcceeehhcCcHHHH
Confidence 00 1235677999998872 2 222333333333332 22111000
Q ss_pred --ccCCCCCC------------cccc-cCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHc
Q 019100 171 --MDCGEGLP------------ASWA-VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235 (346)
Q Consensus 171 --~~~g~~~~------------~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 235 (346)
+-.++.+. ..+. .....+.+.+..++++.....+...++. .....+..+.+++.++++.|+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~m~~ll~~al~~Ga~gis~--~~~y~p~~~~~eL~~l~~~A~~~ 211 (509)
T PRK09061 134 IAVLTGPQAEGTIADFGKALGDPRWQERAATPAELAEILELLEQGLDEGALGIGI--GAGYAPGTGHKEYLELARLAARA 211 (509)
T ss_pred HHHhCCcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHCCCCEEec--CCccCCCCCHHHHHHHHHHHHHc
Confidence 00110000 0011 0111233445555555333332222222 12223456888999999999999
Q ss_pred CCeEEEEecCChh-----hHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh-------hhHHHHHhcCCeE--E
Q 019100 236 KTGIHMHVAEIPY-----ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKV--S 301 (346)
Q Consensus 236 g~~v~~H~~~~~~-----~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~-------~~i~~l~~~g~~v--~ 301 (346)
|..+.+|+.+... +.+.+.+ ..+..++.| .++.+.|...+.. +.++++++.|+.| -
T Consensus 212 g~~v~~H~e~~~~~~~~~e~~av~~-------~i~lA~~~G---~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e 281 (509)
T PRK09061 212 GVPTYTHVRYLSNVDPRSSVDAYQE-------LIAAAAETG---AHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTE 281 (509)
T ss_pred CCEEEEEecCcccCCchhHHHHHHH-------HHHHHHHhC---CCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEE
Confidence 9999999976431 2222221 334444444 4788889877432 3467777888665 4
Q ss_pred EChh
Q 019100 302 HCPA 305 (346)
Q Consensus 302 ~~p~ 305 (346)
+||.
T Consensus 282 ~~P~ 285 (509)
T PRK09061 282 AYPY 285 (509)
T ss_pred ecCc
Confidence 5654
No 78
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=99.73 E-value=4.5e-16 Score=142.95 Aligned_cols=263 Identities=16% Similarity=0.197 Sum_probs=147.6
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|+++++.+ ....++|+|++|+|++|+...+. . .++++||++|++|+|||||.|+|+..-
T Consensus 2 ~~lIk~~~iv~~~----~~~~~di~i~~g~I~~Ig~~l~~----~-~~~~iiD~~g~~v~PG~ID~HVH~rep------- 65 (430)
T COG0044 2 DLLIKNARVVDPG----EDEVADILIKDGKIAAIGKNLEP----T-SGAEIIDAKGLLVLPGLVDLHVHFREP------- 65 (430)
T ss_pred cEEEeccEEEcCC----CceEecEEEECCEEEEeccCCCC----C-CCCcEEECCCCEEccCeeEEEEecCCC-------
Confidence 4799999999752 22568999999999999987543 1 467899999999999999999999661
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC-----HHHHHHHHHHhC----CeEEEeccc
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLG----LRACLVQST 170 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-----~~~~~~~~~~~g----~~~~~~~~~ 170 (346)
.. ...+++. .+.+.++..|+|++.+|.... .+.+........ +.......+
T Consensus 66 ---g~-------------~~ke~~~----tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~i 125 (430)
T COG0044 66 ---GF-------------EHKETFE----TGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGL 125 (430)
T ss_pred ---Cc-------------chhhhHH----HHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEE
Confidence 00 0112222 233568899999999997422 222222222111 111111111
Q ss_pred ccCCCC---------------CCcccccCChHHHHHHHHHHHHHHcC-----CC-----------CCCeEEEEeecccc-
Q 019100 171 MDCGEG---------------LPASWAVRTTDDCIQSQKELYAKHHH-----AA-----------DGRIRIWFGIRQIM- 218 (346)
Q Consensus 171 ~~~g~~---------------~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~-----------~~~~~~~~~~~~~~- 218 (346)
.....+ +............++...+....... .- .|.....+...+.+
T Consensus 126 t~~~~~~~~~~~~~~~~g~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~ 205 (430)
T COG0044 126 TKGNLGKLELTERGVEAGFKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPP 205 (430)
T ss_pred eccccchhhhhhhhhccceEEEecCCcCcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCCh
Confidence 110100 01111011112222222222222110 00 01111111111111
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCe---eEEEeccCChhhHHHHHh
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNL---LSAHTVWVNHTEIGLLSR 295 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~---~~~H~~~~~~~~i~~l~~ 295 (346)
...-..+...+++|+..|.++|+-...+....+ +++.....|.++ +..|...++++++..
T Consensus 206 ~aE~~~iar~~~la~~~g~~vhi~HiSt~~sv~--------------li~~ak~~g~~vt~EvtphHL~l~~~~~~~--- 268 (430)
T COG0044 206 IAEASAIARDLELARATGARVHICHISTKESVE--------------LIRAAKAEGIRVTAEVTPHHLLLDEEDIED--- 268 (430)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHH--------------HHHHHhhcCCceEEeecchheEccHhHhhc---
Confidence 122345777888999999887776656655433 333333333343 335777788888655
Q ss_pred cCCeEEEChhhhccccccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 296 AGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 296 ~g~~v~~~p~~~~~l~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
.+....++|.-... .....+.+.++.|+.-.+.||+.|..
T Consensus 269 ~~~~~k~nPPLR~~-~dr~aL~~~l~~G~ID~iasDHaPht 308 (430)
T COG0044 269 LGTLAKVNPPLRDE-EDREALWEALKDGVIDVIASDHAPHT 308 (430)
T ss_pred cCcceEECCCCCCH-HHHHHHHHHHhCCCCcEEEcCCCCCC
Confidence 78888888843211 34567888999999999999999854
No 79
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=99.73 E-value=1e-15 Score=142.76 Aligned_cols=164 Identities=19% Similarity=0.249 Sum_probs=98.5
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhh--hh-----hhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI--LQ-----QFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~--~~-----~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
.+++|+|++|++.. .+ ...+|.|+||+|++|++.... .. .+.+...++||++|++|+|||||+|+|+..
T Consensus 71 ~DlVI~Na~IiD~~---gi-~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~ 146 (573)
T PRK13206 71 PDTVITGAVILDHW---GI-VKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFIC 146 (573)
T ss_pred CCEEEECeEEECCC---Ce-EEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCC
Confidence 46899999999632 23 457999999999999974311 00 011234689999999999999999999754
Q ss_pred cccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC---------------HHHHHHH
Q 019100 92 QLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---------------VSEMAKA 156 (346)
Q Consensus 92 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~---------------~~~~~~~ 156 (346)
|.. ...++..||||+.+++... ...+.+.
T Consensus 147 ----------------------------Pg~--------~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~a 190 (573)
T PRK13206 147 ----------------------------PQI--------VDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEA 190 (573)
T ss_pred ----------------------------chH--------HHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHH
Confidence 111 1568899999999863110 1122222
Q ss_pred HHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC
Q 019100 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 236 (346)
Q Consensus 157 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g 236 (346)
.....+...+ .+.+ ..+ . .....+++ ..+..-++ .+..+..+++.+.++++.|++++
T Consensus 191 a~~~pvn~g~------~g~g--~~~---~----~~~L~el~----~aGA~GfK----i~~d~g~t~~~i~~aL~~A~~~g 247 (573)
T PRK13206 191 LDGWPVNVAL------LGKG--NTV---S----AEALWEQL----RGGAGGFK----LHEDWGSTPAAIDACLRVADAAG 247 (573)
T ss_pred hhcCceeEEE------ecCc--CcC---C----HHHHHHHH----HCCCcEEe----ecCccCCCHHHHHHHHHHHHHhC
Confidence 2211111110 0100 000 0 01122221 11211122 23334578999999999999999
Q ss_pred CeEEEEecC
Q 019100 237 TGIHMHVAE 245 (346)
Q Consensus 237 ~~v~~H~~~ 245 (346)
.++.+|+..
T Consensus 248 v~V~iHadt 256 (573)
T PRK13206 248 VQVALHSDT 256 (573)
T ss_pred CEEEEECCC
Confidence 999999854
No 80
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.72 E-value=9.7e-17 Score=146.93 Aligned_cols=242 Identities=25% Similarity=0.270 Sum_probs=140.2
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|++. ..+.+.+|+|++|+|+.|++..+. ....++||++|++|+|||||+|+|+....
T Consensus 1 ~~i~~~~v~~~----~~~~~~~i~i~~g~I~~i~~~~~~-----~~~~~vid~~g~~l~PG~iD~H~H~~~g~------- 64 (374)
T cd00854 1 LIIKNARILTP----GGLEDGAVLVEDGKIVAIGPEDEL-----EEADEIIDLKGQYLVPGFIDIHIHGGGGA------- 64 (374)
T ss_pred CEEEeEEEeCC----CEEcccEEEEECCEEEEecCCCCc-----ccCCcEEECCCCEecccEEEeeecccCCC-------
Confidence 37899999964 355788999999999999875432 12357999999999999999999985411
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-CHHHH----HHHHH--HhC--CeEEEecccc
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEM----AKAVE--LLG--LRACLVQSTM 171 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-~~~~~----~~~~~--~~g--~~~~~~~~~~ 171 (346)
.+. ..+.+.. ....+.++..|||++.++... ..+.+ ..... ..+ .+. ++ +.
T Consensus 65 -~~~------------~~~~e~~----~~~~~~~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~-~g--~h 124 (374)
T cd00854 65 -DFM------------DGTAEAL----KTIAEALAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEI-LG--IH 124 (374)
T ss_pred -CCC------------CCCHHHH----HHHHHHHHccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCee-EE--Ee
Confidence 000 0011221 223456888999999987622 22222 11111 111 222 11 23
Q ss_pred cCCCCCCcccccCChHHHHH-HHHHHHHHHcCCCCCCeEEEEeecccccCCHHHH--HHHHHHHHHcCCeEE-EEecCCh
Q 019100 172 DCGEGLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLL--LETRDMAREFKTGIH-MHVAEIP 247 (346)
Q Consensus 172 ~~g~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~a~~~g~~v~-~H~~~~~ 247 (346)
-+||++.+.+.+.+..+.++ ...+.++.+.....+.+++. +.+||.. .++++.++++|+.+. -|..-+.
T Consensus 125 leGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~ik~~-------tlaPE~~~~~~~i~~~~~~gi~v~~GH~~a~~ 197 (374)
T cd00854 125 LEGPFISPEKKGAHPPEYLRAPDPEELKKWLEAAGGLIKLV-------TLAPELDGALELIRYLVERGIIVSIGHSDATY 197 (374)
T ss_pred eecCccCcccCCCCCHHHcCCcCHHHHHHHHHhcCCCEEEE-------EECCCCCChHHHHHHHHHCCeEEEeeCCcCCH
Confidence 36777766654444333322 22233444444444667653 3345555 678889999999995 7875432
Q ss_pred hhHHHHHHhcCCCCCHHHH---------HHHcCC-----CCC--Ce-eEEEeccCChhhHHHHHhc-C-CeEEEChhhhc
Q 019100 248 YENQVVMDTRKVDHGTVTF---------LDKIEF-----LQN--NL-LSAHTVWVNHTEIGLLSRA-G-VKVSHCPASAM 308 (346)
Q Consensus 248 ~~~~~~~~~~g~~~~~~~~---------l~~~g~-----l~~--~~-~~~H~~~~~~~~i~~l~~~-g-~~v~~~p~~~~ 308 (346)
.......+ .|.. .+++ .++.+. ... .. ++.|+.++++++++++.+. | -+++.||-++.
T Consensus 198 ~~~~~a~~-~G~~--~~tH~~n~m~~~~~r~~~~~~a~l~~~~~~~~li~dg~Hv~~~~~~~~~r~~g~~~~~lvtD~~~ 274 (374)
T cd00854 198 EQAVAAFE-AGAT--HVTHLFNAMSPLHHREPGVVGAALSDDDVYAELIADGIHVHPAAVRLAYRAKGADKIVLVTDAMA 274 (374)
T ss_pred HHHHHHHH-cCCC--eeeECCCCCCCcCCCCCcHHHHhhcCCCCeEEEEcCCCcCCHHHHHHHHHhcCCCcEEEEecccc
Confidence 22222222 1211 1110 011111 111 22 6689999999999998888 4 56777776643
No 81
>PLN02303 urease
Probab=99.72 E-value=9.2e-16 Score=147.06 Aligned_cols=191 Identities=18% Similarity=0.239 Sum_probs=118.7
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhh--hh-----hhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI--LQ-----QFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~--~~-----~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
.+++|+|++|++.. .+ ...+|+|+||||++|++.... +. ...+...++||++|++|+|||||+|+|+..
T Consensus 334 ~DlVItNa~IID~~---Gi-~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~ 409 (837)
T PLN02303 334 LDTVITNAVIIDYT---GI-YKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFIC 409 (837)
T ss_pred CCEEEeCeEEECCC---Cc-EEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCC
Confidence 46899999999632 23 467999999999999975321 00 001224689999999999999999999854
Q ss_pred cccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc---------------CCHHHHHHH
Q 019100 92 QLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---------------QHVSEMAKA 156 (346)
Q Consensus 92 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~---------------~~~~~~~~~ 156 (346)
|... .+++..|+||+...+. ..+..+++.
T Consensus 410 ----------------------------Pg~~--------~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~a 453 (837)
T PLN02303 410 ----------------------------PQLA--------TEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQS 453 (837)
T ss_pred ----------------------------CcHH--------HHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHh
Confidence 1111 2334445554444321 111222222
Q ss_pred HHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC
Q 019100 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 236 (346)
Q Consensus 157 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g 236 (346)
.....+...+. +.+.. ..+.+..++++. |.. ++.++..+..+++.+.++++.|++++
T Consensus 454 a~~~pvn~Gf~------gkG~~---------s~l~eL~eliea------Ga~--GfK~h~d~gvTpelL~raLe~AkelG 510 (837)
T PLN02303 454 TDDLPLNFGFT------GKGNT---------AKPEGLHEIIKA------GAM--GLKLHEDWGTTPAAIDNCLDVAEEYD 510 (837)
T ss_pred cccCCCcEEEE------ccCcc---------cCHHHHHHHHHc------CcE--EEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 22222222111 10100 111222222221 222 34455556778999999999999999
Q ss_pred CeEEEEecCChhh---HHHHHHhcCCCCCHHHHHHHcCCCCC
Q 019100 237 TGIHMHVAEIPYE---NQVVMDTRKVDHGTVTFLDKIEFLQN 275 (346)
Q Consensus 237 ~~v~~H~~~~~~~---~~~~~~~~g~~~~~~~~l~~~g~l~~ 275 (346)
+++++|+ |+..+ ++.+++++|.. ++++++..|++|.
T Consensus 511 VpVaIHA-EdLnE~G~vE~t~~a~G~R--pIh~~h~~Ga~gg 549 (837)
T PLN02303 511 IQVTIHT-DTLNESGCVEHSIAAFKGR--TIHTYHSEGAGGG 549 (837)
T ss_pred CEEEEec-CcccccchHHHHHHHHCCC--hHHHHHhcCCCCC
Confidence 9999994 66656 78888888876 9999999999884
No 82
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.71 E-value=4.9e-15 Score=140.75 Aligned_cols=242 Identities=17% Similarity=0.221 Sum_probs=136.7
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|+++... .+ ..++|+|++|+|++|++.. +.++||++|++|+|||||+|+|+..+.
T Consensus 1 dlli~n~~ivd~~~~-~~-~~~dI~I~~g~I~~ig~~~---------~~~viDa~G~~v~PG~ID~H~Hi~~~~------ 63 (552)
T TIGR01178 1 DIVIKNAKIIDVYNG-EI-IPGDIAIANGHIAGVGKYN---------GVKVIDALGEYAVPGFIDAHIHIESSM------ 63 (552)
T ss_pred CEEEEeeEEEeCCCC-cE-EeeeEEEECCEEEEecCCC---------CCeEEECCCCEEEeCeEecccccCCCC------
Confidence 478999999975432 23 4579999999999998641 357999999999999999999996621
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-----CH---HHHHHHHHHhCCeEEEecccc
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HV---SEMAKAVELLGLRACLVQSTM 171 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-----~~---~~~~~~~~~~g~~~~~~~~~~ 171 (346)
.+++. + ...++..|+||+.++... .. +.+.+.+....++.... +.
T Consensus 64 ------------------~~~~~-~------~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~--~~ 116 (552)
T TIGR01178 64 ------------------LTPSE-F------AKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFM--LP 116 (552)
T ss_pred ------------------CChhH-H------HHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEE--CC
Confidence 12222 1 134689999999986532 12 23334333444443221 21
Q ss_pred cCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHH
Q 019100 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (346)
Q Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 251 (346)
.+.+..+.+...... ..++..++++. .+.--++..+...++....++.++.+ +.++++|..+..|+..-...
T Consensus 117 s~vp~~~~e~~g~~~--~~~~i~~~~~~---~~V~glke~m~~~~v~~~d~~~l~~i-~~a~~~g~~I~gHap~l~~~-- 188 (552)
T TIGR01178 117 SCVPALQFETSGAVL--TAEDIDELMEL---DEVLGLAEVMDYPGVINADIEMLNKI-NSARKRNKVIDGHCPGLSGK-- 188 (552)
T ss_pred CCCCCCcccCCCCcc--CHHHHHHHHcC---CCccEEEEEecchhhcCCCHHHHHHH-HHHHhCCCEEEecCCCCCHH--
Confidence 222222212221110 01222333221 11111233333333334566667655 78999999999998543321
Q ss_pred HHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccccccccHHHHH--HcCCcEEEc
Q 019100 252 VVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEML--HADICVSLG 329 (346)
Q Consensus 252 ~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~--~~Gv~v~~G 329 (346)
....+.+.|. ...|.. .+.++...-.++|..+...-.+..+ +...+..+. +.+.+++++
T Consensus 189 -----------eL~~~~~aGi-----~~dHe~-~s~~ea~e~~~~Gm~~~ir~gs~~~--n~~~~~~~~~~~~~~~~~l~ 249 (552)
T TIGR01178 189 -----------LLNKYISAGI-----SNDHES-TSIEEAREKLRLGMKLMIREGSAAK--NLEALHPLINEKNCRSLMLC 249 (552)
T ss_pred -----------HHHHHHHcCC-----CCCcCc-CCHHHHHHHHHCCCEEEEeCCcccc--CHHHHHHHHhhcCCceEEEE
Confidence 2222334443 234644 4556666667889888765544322 222222222 467899999
Q ss_pred CCC
Q 019100 330 TDG 332 (346)
Q Consensus 330 TD~ 332 (346)
||.
T Consensus 250 TD~ 252 (552)
T TIGR01178 250 TDD 252 (552)
T ss_pred eCC
Confidence 994
No 83
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=99.71 E-value=3.6e-15 Score=138.50 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=100.5
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhh--h-----hhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--Q-----QFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~--~-----~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
.+++|+|++|++... .+ ..++|.|+||||++|++..+.. . ...+...++||++|++|+|||||+|+|+..
T Consensus 68 ~DlVItNa~IIDp~~--Gi-~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~ 144 (569)
T PRK13308 68 LDFVLCNVTVIDPVL--GI-VKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDS 144 (569)
T ss_pred CCEEEECeEEEcCCC--Ce-EEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCC
Confidence 469999999996422 23 4689999999999999753210 0 001235689999999999999999999854
Q ss_pred cccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC--c------CC---HHHHHHHHHHh
Q 019100 92 QLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--G------QH---VSEMAKAVELL 160 (346)
Q Consensus 92 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~--~------~~---~~~~~~~~~~~ 160 (346)
+.. . ..++..||||+.+++ + .. ...+.+.....
T Consensus 145 ----------------------------Pg~-~-------~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~ 188 (569)
T PRK13308 145 ----------------------------AQL-V-------DHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAW 188 (569)
T ss_pred ----------------------------ccH-H-------HHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcC
Confidence 111 0 458899999999852 1 11 22333333322
Q ss_pred CCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEE
Q 019100 161 GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 240 (346)
Q Consensus 161 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~ 240 (346)
.+...+ . +.+.. .. +.+..++++ . |-. ++..+..+..+++.+.++++.|++++.++.
T Consensus 189 pvN~g~----~--gkG~~-----s~----~aeL~eli~----a--GA~--GfKi~ed~g~t~~~i~~aL~~A~~~dv~Va 245 (569)
T PRK13308 189 PVNFGF----L--GRGNS-----SK----PAALIEQVE----A--GAC--GLKIHEDWGAMPAAIDTCLEVADEYDFQVQ 245 (569)
T ss_pred CccEEE----E--cCCcc-----cC----HHHHHHHHH----C--CCC--EEeecCCCCCCHHHHHHHHHHHHhcCCEEE
Confidence 222111 1 11111 01 112222221 1 211 122222335588999999999999999999
Q ss_pred EEecC
Q 019100 241 MHVAE 245 (346)
Q Consensus 241 ~H~~~ 245 (346)
+|+..
T Consensus 246 iHadt 250 (569)
T PRK13308 246 LHTDT 250 (569)
T ss_pred EeCCC
Confidence 99864
No 84
>PRK09060 dihydroorotase; Validated
Probab=99.69 E-value=5.3e-15 Score=138.39 Aligned_cols=92 Identities=25% Similarity=0.320 Sum_probs=66.4
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
.+++|+|++|++.+. . ..++|+|+||+|++|++..+ ..+.++||++|++|+|||||+|+|+....
T Consensus 5 ~d~~i~~~~v~~~~~---~-~~~~i~i~~g~I~~i~~~~~------~~~~~~iD~~G~~v~PG~ID~HvH~~~~~----- 69 (444)
T PRK09060 5 FDLILKGGTVVNPDG---E-GRADIGIRDGRIAAIGDLSG------ASAGEVIDCRGLHVLPGVIDSQVHFREPG----- 69 (444)
T ss_pred CcEEEECCEEECCCC---C-eeeEEEEECCEEEEecCCCC------CCCceEEECCCCEEccCEEeccccccCCC-----
Confidence 468999999997542 2 35799999999999986432 12457999999999999999999975410
Q ss_pred CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc
Q 019100 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~ 147 (346)
....++... ..+.++..|||++.++..
T Consensus 70 ------------------~~~~e~~~t----~~~aa~~gGvTtv~~~p~ 96 (444)
T PRK09060 70 ------------------LEHKEDLET----GSRAAVLGGVTAVFEMPN 96 (444)
T ss_pred ------------------CCccchHHH----HHHHHHhCCcEEEEECCC
Confidence 001122222 224678899999999863
No 85
>PRK08044 allantoinase; Provisional
Probab=99.69 E-value=1.1e-14 Score=136.31 Aligned_cols=261 Identities=16% Similarity=0.166 Sum_probs=142.0
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
.+++|+|++|++.+ . . ..++|+|+||+|.+|++... .+.++||+.|.+++|||||.|+|+....
T Consensus 3 ~~~~i~n~~vi~~~--~-~-~~~~i~I~dg~I~~i~~~~~-------~~~~~iD~~G~~v~Pg~iD~h~h~~~~~----- 66 (449)
T PRK08044 3 FDLIIKNGTVILEN--E-A-RVVDIAVKGGKIAAIGQDLG-------DAKEVMDASGLVVSPGMVDAHTHISEPG----- 66 (449)
T ss_pred ceEEEECcEEEcCC--C-C-EEEEEEEECCEEEEecCCCC-------CCCeEEECCCCEEcCCeeccccccCCCC-----
Confidence 46899999999743 2 2 34799999999999986431 2458999999999999999999986511
Q ss_pred CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC-cC-----CHHHHHHHHHHhCCeEEEeccccc
Q 019100 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQ-----HVSEMAKAVELLGLRACLVQSTMD 172 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~-~~-----~~~~~~~~~~~~g~~~~~~~~~~~ 172 (346)
. . ..++.. .....++..|+|++.+++ +. ..+.+....+...-+..+.....
T Consensus 67 ---~--------------~-~~e~~~----~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~- 123 (449)
T PRK08044 67 ---R--------------S-HWEGYE----TGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQL- 123 (449)
T ss_pred ---c--------------c-ccccHH----HHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEE-
Confidence 0 0 011111 233568899999999996 21 22222222222211221110000
Q ss_pred CCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecc-------cccCCHHHHHHHHHHHHHcCCeEEEEecC
Q 019100 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ-------IMNATDRLLLETRDMAREFKTGIHMHVAE 245 (346)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 245 (346)
. ++... .+.+..++.+ .+.--++.++...+ ....+...+.++++.+++.|.++.+|+.+
T Consensus 124 ~--~~~~~--------~~~ei~~l~~----~gv~~fk~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~ 189 (449)
T PRK08044 124 G--GLVSY--------NLDRLHELDE----VGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCEN 189 (449)
T ss_pred e--eeCCC--------CHHHHHHHHH----cCceEEEEEecccCcccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCC
Confidence 0 11110 1222222222 11122444433221 11235667778888898999999999854
Q ss_pred ChhhHHHHH---HhcCC-------CCC-----------HHHHHHHcCCCCCCeeEEEeccCC-hhhHHHHHhcC--CeEE
Q 019100 246 IPYENQVVM---DTRKV-------DHG-----------TVTFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG--VKVS 301 (346)
Q Consensus 246 ~~~~~~~~~---~~~g~-------~~~-----------~~~~l~~~g~l~~~~~~~H~~~~~-~~~i~~l~~~g--~~v~ 301 (346)
..- ..... ...|. ..+ ..++.++.|. ++.+.|..... -+.+..+++.| +...
T Consensus 190 ~~l-~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~g~---~vhi~HiSt~~~~~~i~~ak~~G~~it~e 265 (449)
T PRK08044 190 ALI-CDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGC---RLHVCHISSPEGVEEVTRARQEGQDVTCE 265 (449)
T ss_pred HHH-HHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCC---CEEEEeCCCHHHHHHHHHHHHCCCCEEEE
Confidence 332 11110 11110 000 1222334443 66666765322 24455566666 4556
Q ss_pred EChhhh----ccc----------------cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 302 HCPASA----MRM----------------LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 302 ~~p~~~----~~l----------------~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
+||.-- ..+ .+...+-+.++.|+..+++||+.|.+
T Consensus 266 ~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~~ 320 (449)
T PRK08044 266 SCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCP 320 (449)
T ss_pred cChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCCC
Confidence 677321 000 01234556677999999999999854
No 86
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=99.68 E-value=1.2e-14 Score=135.08 Aligned_cols=164 Identities=20% Similarity=0.291 Sum_probs=101.1
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhh--hh-----hhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI--LQ-----QFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~--~~-----~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
.+++|+|++|++.. .+ ...+|.|+||||++|++..+. .. ...+...++||++|++|+|||||+|+|+..
T Consensus 65 ~DlVI~Na~IiD~~---gi-~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~ 140 (567)
T cd00375 65 LDLVITNALIIDYT---GI-YKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFIC 140 (567)
T ss_pred CCEEEECeEEECCC---Cc-EEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCC
Confidence 46899999999632 23 458999999999999875321 00 011234689999999999999999999854
Q ss_pred cccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC--c-------------CCHHHHHHH
Q 019100 92 QLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--G-------------QHVSEMAKA 156 (346)
Q Consensus 92 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~--~-------------~~~~~~~~~ 156 (346)
|.. ...++..||||+.+++ + .....+++.
T Consensus 141 ----------------------------P~~--------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~a 184 (567)
T cd00375 141 ----------------------------PQQ--------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQA 184 (567)
T ss_pred ----------------------------ccH--------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHH
Confidence 111 1468899999999962 1 112233333
Q ss_pred HHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC
Q 019100 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 236 (346)
Q Consensus 157 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g 236 (346)
.+...+...+. +.+. ...+.+..++++ . |-+ ++..+..+..++..+.++++.|++++
T Consensus 185 a~~~pin~g~~------gkg~---------~~~l~eL~e~~~---a---GA~--GfK~~eD~g~t~~~i~~aL~~A~~~d 241 (567)
T cd00375 185 ADGLPVNIGFL------GKGN---------GSSPDALAEQIE---A---GAC--GLKLHEDWGATPAAIDTCLSVADEYD 241 (567)
T ss_pred hhcCCceEEEE------ecCc---------cccHHHHHHHHH---c---CCE--EEEecCCCCCCHHHHHHHHHHHHhhC
Confidence 33332222111 1011 011122222221 1 222 22333334568999999999999999
Q ss_pred CeEEEEecC
Q 019100 237 TGIHMHVAE 245 (346)
Q Consensus 237 ~~v~~H~~~ 245 (346)
.++.+|+..
T Consensus 242 v~VaiHadt 250 (567)
T cd00375 242 VQVAIHTDT 250 (567)
T ss_pred CEEEEECCC
Confidence 999999854
No 87
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=99.67 E-value=2.3e-14 Score=132.99 Aligned_cols=251 Identities=17% Similarity=0.133 Sum_probs=130.6
Q ss_pred eeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccCC
Q 019100 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM 118 (346)
Q Consensus 39 ~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
..++|+|+||||++|++... ..+.++||++|++|+|||||.|+|+... . ..
T Consensus 4 ~~~~v~I~~g~I~~i~~~~~------~~~~~~ida~g~~v~PG~ID~H~H~~~~-------~----------------~~ 54 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLRI------PPDAEVIDAKGLLVLPGFIDLHVHLRDP-------G----------------EE 54 (411)
T ss_pred EEEEEEEECCEEEEeeccCC------CCCCeEEECCCCEEecCEEEcccCCCCC-------C----------------Cc
Confidence 45799999999999974211 1245789999999999999999998530 0 00
Q ss_pred CchHHHHHHHHHHHHHHhcCceEeeecCcC-----CHHHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHH
Q 019100 119 TEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQ 193 (346)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 193 (346)
..++.. .....++..|||++.++... ..+.+....+...-......... . ++..... ...+++.
T Consensus 55 ~~~~~~----~~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~-~--~~~~~~~----~~~l~e~ 123 (411)
T TIGR00857 55 YKEDIE----SGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLY-G--GVTQGNQ----GKELTEA 123 (411)
T ss_pred cHhHHH----HHHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccEEEE-E--EEecCCc----cccHHHH
Confidence 112211 12245889999999998532 12222222222211110000000 0 0111000 0012222
Q ss_pred HHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcC-------CCCC----
Q 019100 194 KELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK-------VDHG---- 262 (346)
Q Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g-------~~~~---- 262 (346)
..+.+ . |.....+.....+..+...+.+++++++++|.++.+|+.+..- ........| ...+
T Consensus 124 ~~l~~---~---Gv~g~~f~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l-~~~~~~~~g~~~~~~~~~~~p~~a 196 (411)
T TIGR00857 124 YELKE---A---GAVGRMFTDDGSEVQDILSMRRALEYAAIAGVPIALHAEDPDL-IYGGVMHEGPSAAQLGLPARPPEA 196 (411)
T ss_pred HHHHH---C---CcEEEEEEeCCcccCCHHHHHHHHHHHHHcCCEEEEecCCHHH-HhhhhhcCCcccHhhCCCCCCHHH
Confidence 22221 1 2222112222223457888999999999999999999854321 110000000 0000
Q ss_pred ----HHHHHHHcCCCCCCeeEEEeccCCh-hhHHHHHhcC--CeEEEChhh----hcc-------------c---ccccc
Q 019100 263 ----TVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAG--VKVSHCPAS----AMR-------------M---LGFAP 315 (346)
Q Consensus 263 ----~~~~l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g--~~v~~~p~~----~~~-------------l---~~~~~ 315 (346)
..+.+.-....+.+.++.|.+.... +.+...++.| ++..+||.. ... + .+...
T Consensus 197 E~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~ 276 (411)
T TIGR00857 197 EEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLA 276 (411)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHH
Confidence 1111221222344767777664322 3345555666 556778832 100 0 11235
Q ss_pred HHHHHHcCCcEEEcCCCCCCC
Q 019100 316 IKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 316 ~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
+.++++.|+...++||+.|.+
T Consensus 277 L~~~l~~g~i~~i~sDh~p~~ 297 (411)
T TIGR00857 277 LIEGLKDGIIDIIATDHAPHT 297 (411)
T ss_pred HHHHHhcCCCcEEEcCCCCCC
Confidence 778899999999999998754
No 88
>PRK08417 dihydroorotase; Provisional
Probab=99.66 E-value=7.5e-15 Score=135.00 Aligned_cols=237 Identities=11% Similarity=0.112 Sum_probs=126.5
Q ss_pred EEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchH
Q 019100 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED 122 (346)
Q Consensus 43 v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (346)
|+|+||+|++|++.. .++++||++|++|+|||||+|+|+... ..+.++
T Consensus 1 i~I~dG~I~~i~~~~--------~~~~viDa~g~~vlPG~ID~HvH~~~~------------------------~~~~e~ 48 (386)
T PRK08417 1 IRIKDGKITEIGSDL--------KGEEILDAKGKTLLPALVDLNVSLKND------------------------SLSSKN 48 (386)
T ss_pred CEEECCEEEEecCCC--------CCCeEEECCCCEEccCeeEEeeeeCCC------------------------CcChhh
Confidence 579999999998653 245899999999999999999998541 111122
Q ss_pred HHHHHHHHHHHHHhcCceEeeecCcCCH-----HHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHH
Q 019100 123 SYISTLLCGIELIHSGVTCFAEAGGQHV-----SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY 197 (346)
Q Consensus 123 ~~~~~~~~~~~~l~~GvTt~~d~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 197 (346)
+.. ..+.++..||||+++|++... +.+....+...... ...++.. ... ...+.+++...+.
T Consensus 49 ~~t----~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~-~~~~~~~~i~~l~ 114 (386)
T PRK08417 49 LKS----LENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELP---MQIFPSI------RAL-DEDGKLSNIATLL 114 (386)
T ss_pred HHH----HHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccC---CcEEEEE------EEE-CCCccHHHHHHHH
Confidence 222 235688999999999974211 12211112111100 0011111 000 0111122333332
Q ss_pred HHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcC-------CCCC--------
Q 019100 198 AKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK-------VDHG-------- 262 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g-------~~~~-------- 262 (346)
+ .+...++ . . ...+++.+.++++.++++|.++.+|+-+..- ........| ...+
T Consensus 115 ~----~Gv~~~k--~--~--~~~~~~~l~~~~~~a~~~g~~V~~HaEd~~~-~~~~~~~~g~~~~~~~~~~rp~~aE~~~ 183 (386)
T PRK08417 115 K----KGAKALE--L--S--SDLDANLLKVIAQYAKMLDVPIFCRCEDSSF-DDSGVMNDGELSFELGLPGIPSIAETKE 183 (386)
T ss_pred H----CCCEEEE--C--C--CCCCHHHHHHHHHHHHHcCCEEEEeCCCHHH-hhHHHHhcChhhHHhCCCCCCHHHHHHH
Confidence 1 1111112 1 1 1457888999999999999999999854321 110000001 0101
Q ss_pred HHHHHHHcCCCCCCeeEEEeccCCh-hhHHHHHhcC--CeEEEChhh----hc---ccc-------------ccccHHHH
Q 019100 263 TVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAG--VKVSHCPAS----AM---RML-------------GFAPIKEM 319 (346)
Q Consensus 263 ~~~~l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g--~~v~~~p~~----~~---~l~-------------~~~~~~~~ 319 (346)
..+.+.-....+.+.++.|.+.... +.+...++.| ++..+||.. .. ... ....+-+.
T Consensus 184 v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~ 263 (386)
T PRK08417 184 VAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEA 263 (386)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHH
Confidence 1112222233344666666654222 2244445566 566888842 10 000 01235567
Q ss_pred HHcCCcEEEcCCCCCCC
Q 019100 320 LHADICVSLGTDGAPSN 336 (346)
Q Consensus 320 ~~~Gv~v~~GTD~~~~~ 336 (346)
++.|..-.++||+.|.+
T Consensus 264 l~~g~Id~i~SDHaP~~ 280 (386)
T PRK08417 264 LKEGKIDFLTSLHSAKS 280 (386)
T ss_pred HhcCCceEEEcCCCCCC
Confidence 88899999999999854
No 89
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=99.66 E-value=1.7e-16 Score=143.61 Aligned_cols=228 Identities=24% Similarity=0.321 Sum_probs=142.7
Q ss_pred EEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC--CHH---
Q 019100 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--HVS--- 151 (346)
Q Consensus 77 ~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~--~~~--- 151 (346)
+|+|||||+|+|+.+...++. .++++.+......++++++.|||++.+++.. ...
T Consensus 1 ~v~PGlID~H~H~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~ 60 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQGGLRGL--------------------LDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIEL 60 (333)
T ss_dssp EEEE-EEEEEEEGGGTTHTTS--------------------SSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHH
T ss_pred CEEcChhHHhhCcCCcCcccc--------------------CCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCcccccc
Confidence 699999999999988554442 3456666677778889999999999998422 211
Q ss_pred --HHHHHHHH-hC--C-eEEEecccccCCCCCCcccc-----cCChHHHHHHHHHHHHHHcCCCCC-----CeEEEEeec
Q 019100 152 --EMAKAVEL-LG--L-RACLVQSTMDCGEGLPASWA-----VRTTDDCIQSQKELYAKHHHAADG-----RIRIWFGIR 215 (346)
Q Consensus 152 --~~~~~~~~-~g--~-~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~ 215 (346)
...+.+.. .. . ..++.... .+ ....+. ............++++.+...... .+...+.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (333)
T PF01979_consen 61 RNEIMEGLAAAPKIEPAMTLLGTGS--VG--GHGEGPNEPPDKNGPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPH 136 (333)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEECE--CS--EEEECHHHHHHHHSEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHH
T ss_pred ccccccccccchhhhcccccccccc--cc--ccccccccccccccCCchhhhHHHHHHHhhhhhhhhccccccccccccc
Confidence 11111111 11 1 11110000 11 000000 000000000122233333222111 345556777
Q ss_pred ccccCCHHHHHHHHHHHHH-----c-CCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCC-----CCCeeEEEecc
Q 019100 216 QIMNATDRLLLETRDMARE-----F-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFL-----QNNLLSAHTVW 284 (346)
Q Consensus 216 ~~~~~~~~~l~~~~~~a~~-----~-g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l-----~~~~~~~H~~~ 284 (346)
....++.+.++..++.+++ . +.++++|+.+.......+.+.++. .+++.+...+++ +...++.|+.+
T Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 214 (333)
T PF01979_consen 137 NPYTVSDEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGM--SPIEALDHLGLLEEAIDDGVDLIAHGTH 214 (333)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSH--HHHHHHHHHHSCHHHHHHHCEEEEEHTT
T ss_pred ccccchhhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeec--cchhhhccchhhhhhcccccceeecccc
Confidence 7888899999999999998 4 999999999987764444444422 266777777777 66788899999
Q ss_pred CChhhHHHHHhcCCeEEEChhhhcc--------------------c-cccccHHHHHHc-CCcEEEcCCC
Q 019100 285 VNHTEIGLLSRAGVKVSHCPASAMR--------------------M-LGFAPIKEMLHA-DICVSLGTDG 332 (346)
Q Consensus 285 ~~~~~i~~l~~~g~~v~~~p~~~~~--------------------l-~~~~~~~~~~~~-Gv~v~~GTD~ 332 (346)
++++++++|++.+..++.||.++.. + .+..++..+++. |++ +|||+
T Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~--lgtDg 282 (333)
T PF01979_consen 215 LSDEEIELLKETGIGIIHCPISNDSAPHKPGKAIMMDGTAEGIYGLGSGGAPLFRMLDKMGVN--LGTDG 282 (333)
T ss_dssp SEHHHHHHHHHHTHEEEEEHHHHHHHHHHTTHHSETTBSBTSBSCTTHHHHHHHHHHHCTTHE--ETTCT
T ss_pred CCHHHhhhhhccCCccccccchhhhhccccccccccchhccccccccccccchhhhhhhcccc--ccccc
Confidence 9999999999999999999998765 2 233456666666 999 99994
No 90
>PRK13985 ureB urease subunit beta; Provisional
Probab=99.65 E-value=6.6e-14 Score=129.72 Aligned_cols=166 Identities=20% Similarity=0.281 Sum_probs=101.6
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhh-------hhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~-------~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
.+++|+|++|++.. .+ ..++|.|+||||++|++..+... ...+...++||++|++|+|||||+|+|+..
T Consensus 65 ~DlVI~Na~IiD~~---gi-~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~ 140 (568)
T PRK13985 65 LDLIITNALIIDYT---GI-YKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFIS 140 (568)
T ss_pred CCEEEECeEEECCC---Cc-EEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCC
Confidence 46899999999632 23 45799999999999997532100 001235689999999999999999999844
Q ss_pred cccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc-----CC----------HHHHHHH
Q 019100 92 QLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QH----------VSEMAKA 156 (346)
Q Consensus 92 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~-----~~----------~~~~~~~ 156 (346)
|.. . ..++..||||+.+++. .. .+.+.+.
T Consensus 141 ----------------------------P~~-~-------~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~ 184 (568)
T PRK13985 141 ----------------------------PQQ-I-------PTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRA 184 (568)
T ss_pred ----------------------------ccH-H-------HHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHH
Confidence 111 1 2488999999998421 11 1233333
Q ss_pred HHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcC
Q 019100 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 236 (346)
Q Consensus 157 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g 236 (346)
.+...+...+ . +.+.. .. +.+..++++ . |-+ ++..+..+..++..+.++++.|++++
T Consensus 185 a~~~pvn~gf----~--gkG~~-----~~----l~eL~el~~----a--GA~--GfK~~ed~g~t~~~I~~aL~vA~~~d 241 (568)
T PRK13985 185 AEEYSMNLGF----L--GKGNS-----SN----DASLADQIE----A--GAI--GFKIHEDWGTTPSAINHALDVADKYD 241 (568)
T ss_pred hhccCccEEE----e--cCCcc-----CC----HHHHHHHHH----c--CCE--EEEECCccCCCHHHHHHHHHHHHHcC
Confidence 3322222111 1 11111 01 122222221 1 222 23334444578899999999999999
Q ss_pred CeEEEEecCCh
Q 019100 237 TGIHMHVAEIP 247 (346)
Q Consensus 237 ~~v~~H~~~~~ 247 (346)
.++.+|+....
T Consensus 242 v~V~iHtdtln 252 (568)
T PRK13985 242 VQVAIHTDTLN 252 (568)
T ss_pred CEEEEeCCCCC
Confidence 99999986443
No 91
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.64 E-value=1.3e-14 Score=132.11 Aligned_cols=197 Identities=20% Similarity=0.222 Sum_probs=118.3
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~ 99 (346)
+++|+|++|++.+ .++.+++|.|+||+|++|++..+. ....++||++|++|+|||||.|+|+...
T Consensus 4 ~~~i~n~~i~~~~---~~~~~~~i~V~dGkI~~I~~~~~~-----~~~~~viD~~G~~i~PGfID~HvHg~~g------- 68 (380)
T TIGR00221 4 SYLLKDIAIVTGN---EVIDNGAVGINDGKISTVSTEAEL-----EPEIKEIDLPGNVLTPGFIDIHIHGCGG------- 68 (380)
T ss_pred eEEEEeeEEECCC---CEEeccEEEEECCEEEEEcccccC-----CCCCeEEECCCCEEccceeeeeeccccC-------
Confidence 5899999999743 355678999999999999875432 1245799999999999999999998541
Q ss_pred CCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcCC-HHHH---HHHHHH-h-CCeEEEecccccC
Q 019100 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSEM---AKAVEL-L-GLRACLVQSTMDC 173 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-~~~~---~~~~~~-~-g~~~~~~~~~~~~ 173 (346)
..+. ..+++.. ....+.+++.|||++.+..... .+.+ ++.... . ......-..+.-+
T Consensus 69 -~~~~------------~~~~e~~----~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlE 131 (380)
T TIGR00221 69 -VDTN------------DASFETL----EIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHLE 131 (380)
T ss_pred -cCCC------------CCCHHHH----HHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEeee
Confidence 0100 0112222 2233567789999999875322 2222 222211 1 0011111223348
Q ss_pred CCCCCcccccCChHHHHH-HHHHHHHHHcCCCCCCeEEE-EeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHH
Q 019100 174 GEGLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIRIW-FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (346)
Q Consensus 174 g~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 251 (346)
||++++.+++.+..+.++ ...+.++.+.....+.++.. ++|. ..- -.++.+.++++|+.+.+ ..+.+..+
T Consensus 132 GPfi~~~~~Gah~~~~i~~p~~~~~~~~~~~~~~~i~~vTlAPE--~~~----~~~~i~~l~~~gi~vs~--GHs~A~~~ 203 (380)
T TIGR00221 132 GPFLSPEKKGAHPPEYIREPDVELFKKFLCEAGGVITKVTLAPE--EDQ----HFELIRHLKDAGIIVSA--GHTNATYE 203 (380)
T ss_pred cCcCChhhcCCCCHHHhhCcCHHHHHHHHHhcCCCEEEEEECCC--CCC----hHHHHHHHHHCCeEEEe--eCCCCCHH
Confidence 889999999988888876 34455566655445555532 3332 111 12456677777777664 33444455
Q ss_pred HHHHh
Q 019100 252 VVMDT 256 (346)
Q Consensus 252 ~~~~~ 256 (346)
++.++
T Consensus 204 ~~~~a 208 (380)
T TIGR00221 204 LAKAA 208 (380)
T ss_pred HHHHH
Confidence 54443
No 92
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.58 E-value=2e-13 Score=125.02 Aligned_cols=218 Identities=13% Similarity=0.155 Sum_probs=117.5
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCC-CEEeecccccccCCccccccccc
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS-QILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g-~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
+++|+|++|++. . ..+|+|+||||++|++..+. .+.++||++| ++|+|||||+|+|+....
T Consensus 2 ~~~i~n~~i~~~--~-----~~~v~i~~g~I~~v~~~~~~------~~~~~iD~~g~~~l~PG~ID~H~H~~~~~----- 63 (365)
T TIGR03583 2 DLLIKNGRTVNG--T-----PVDIAIEDGKIAAVGTTITG------SAKQTIDLEGETYVSAGWIDDHTHCFPKS----- 63 (365)
T ss_pred cEEEECcEEecC--C-----eeEEEEECCEEEEecCCCCC------CCCeEEECCCCeEEecCEEEeeeccCCCc-----
Confidence 479999999962 1 24899999999999864321 2358999999 999999999999985310
Q ss_pred CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc---CCHHHHHHHHHHhCCeEEEecccccCCC
Q 019100 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGE 175 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 175 (346)
. . ..++.. ..++..|||++.+++. ...+.+.+..+....+....... ...
T Consensus 64 ---~--------------~-~~~~~~-------~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 116 (365)
T TIGR03583 64 ---A--------------L-YYDEPD-------EIGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNI--SRI 116 (365)
T ss_pred ---c--------------c-ccCCHh-------HhhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeee--hhc
Confidence 0 0 001100 1246789999998652 33444555544444332111100 111
Q ss_pred CC-CcccccCChHHHHHHHHHHHHHHcCCCCCCe---EEEEeeccc--ccCCHHHHHHHHHHHHHcCCeEEEEecCChhh
Q 019100 176 GL-PASWAVRTTDDCIQSQKELYAKHHHAADGRI---RIWFGIRQI--MNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (346)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 249 (346)
+. ++...............++++.+ ...+ +..+++..+ ...++..+...+..+ +.++++.+|+.+...+
T Consensus 117 G~~~~~~~~~~~~~~~~~l~~~~~~~----~~~vv~~~~~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~ 191 (365)
T TIGR03583 117 GLVAQDELADLSNLDASAVKQAVERY----PDFIVGLKARMSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPPE 191 (365)
T ss_pred cccChhhhhChHHhHHHHHHHHHHhC----cCcEEEEEEeecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCccC
Confidence 22 11110000111112222233221 1111 222333211 222344444444433 6899999999887765
Q ss_pred HHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh-----------hhHHHHHhcCCeEEEC
Q 019100 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHC 303 (346)
Q Consensus 250 ~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~-----------~~i~~l~~~g~~v~~~ 303 (346)
...+.+ .... + . .+.|++.-.+ +++....+.|+.+..+
T Consensus 192 ~~~i~~-------------~~~~-g-~-~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~ 240 (365)
T TIGR03583 192 LDEILA-------------LMEK-G-D-VLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVG 240 (365)
T ss_pred HHHHHH-------------HhcC-C-C-eeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeC
Confidence 544432 2111 1 2 4579887665 6666667778777655
No 93
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.56 E-value=2.1e-13 Score=124.48 Aligned_cols=198 Identities=17% Similarity=0.097 Sum_probs=116.5
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
++|+|++|++.+ .++++.+|+|+||+|++|++..+. ..+.++||++|++|+|||||+|+|....
T Consensus 2 ~~i~n~~i~~~~---~~~~~~~v~IedgkI~~I~~~~~~-----~~~~~~ID~~G~~l~PG~ID~HvHG~~g-------- 65 (382)
T PRK11170 2 YALTNGRIYTGH---EVLDDHAVVIADGLIEAVCPVAEL-----PPGIEQRDLNGAILSPGFIDLQLNGCGG-------- 65 (382)
T ss_pred EEEEeeEEECCC---CeEeCCEEEEECCEEEEecCCccC-----CCCCeEEeCCCCEEccceeeeeecCccC--------
Confidence 679999999754 456778999999999999875432 1245799999999999999999997441
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-CHHHH---HHHHHH-hCCeEEEecccccCCC
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEM---AKAVEL-LGLRACLVQSTMDCGE 175 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-~~~~~---~~~~~~-~g~~~~~~~~~~~~g~ 175 (346)
..+.+ .....+.+. .....+.+++.|||++.+.... ..+.+ ++.... .......-..+.-+||
T Consensus 66 ~~~~~--------~~~~~~~~~----l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGP 133 (382)
T PRK11170 66 VQFND--------TAEAISVET----LEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGP 133 (382)
T ss_pred ccccc--------CccCCCHHH----HHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecC
Confidence 11000 000111121 1222234788999999976422 22222 222221 1111111122334888
Q ss_pred CCCcccccCChHHHHH-HHHHHHHHHcCCCCCCeE-EEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHH
Q 019100 176 GLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIR-IWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253 (346)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~ 253 (346)
++++.+++.+..+.++ ...+.++.+.... +.++ +-++|. .. . . ++.+.++++|+.+.+-.. .+..+..
T Consensus 134 fi~~~~~Gah~~~~~~~p~~~~~~~~~~~~-~~i~~iTlAPE--~~-~---~-~~i~~l~~~gi~vs~GHs--~A~~~~~ 203 (382)
T PRK11170 134 YLNLVKKGTHNPEFIRKPDAEMVDFLCENA-DVITKVTLAPE--MV-D---A-EVIRKLVEAGIVVSAGHS--NATYEEA 203 (382)
T ss_pred CCCcccCCCCCHHHhcCcCHHHHHHHHhcc-CCEEEEEECCC--CC-c---H-HHHHHHHHCCcEEEeeCC--cCCHHHH
Confidence 9999998888888876 3445566665543 3443 223443 11 1 2 466678888877766543 3445544
Q ss_pred HHh
Q 019100 254 MDT 256 (346)
Q Consensus 254 ~~~ 256 (346)
.++
T Consensus 204 ~~a 206 (382)
T PRK11170 204 KAG 206 (382)
T ss_pred HHH
Confidence 443
No 94
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.56 E-value=9.7e-15 Score=99.45 Aligned_cols=44 Identities=27% Similarity=0.663 Sum_probs=34.4
Q ss_pred EEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCc
Q 019100 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (346)
Q Consensus 43 v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~ 90 (346)
|+|+||||++|++..+. +.+..++||++|++|+|||||+|+|+.
T Consensus 1 V~I~~g~I~~v~~~~~~----~~~~~~viD~~g~~v~PG~ID~H~H~~ 44 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSEL----PADAAEVIDAKGKYVMPGFIDMHTHLG 44 (68)
T ss_dssp EEEETTEEEEEESSCCT----TSTCCEEEEETTCEEEE-EEEEEE-TT
T ss_pred CEEECCEEEEeCCCCCC----CCCCCEEEECCCCEEeCCeEeeeeccc
Confidence 78999999999655432 134567899999999999999999986
No 95
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=99.56 E-value=5.5e-14 Score=129.03 Aligned_cols=104 Identities=9% Similarity=0.096 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEE
Q 019100 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (346)
Q Consensus 223 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~ 302 (346)
+.+..+.++|++++++++++...+....+ .++..++.|+.....+..|...++++++. ..|..+.+
T Consensus 172 ~~v~~~~~la~~~~~~i~i~h~ss~~~l~-----------~i~~~~~~G~~~~~e~~~h~L~ld~~~~~---~~~~~~k~ 237 (374)
T cd01317 172 IMVARDLELAEATGARVHFQHLSTARSLE-----------LIRKAKAKGLPVTAEVTPHHLLLDDEALE---SYDTNAKV 237 (374)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCCHHHHH-----------HHHHHHHCCCCEEEEecHHHHhcCHHHHh---ccCCceEE
Confidence 47778999999999999995555554333 23334455655445566799999998864 35777788
Q ss_pred ChhhhccccccccHHHHHHcCCcEEEcCCCCCCCCCCCC
Q 019100 303 CPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSI 341 (346)
Q Consensus 303 ~p~~~~~l~~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~ 341 (346)
+|..... .+..++.++++.|+.+++|||+.|.+...++
T Consensus 238 ~Pplr~~-~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~ 275 (374)
T cd01317 238 NPPLRSE-EDREALIEALKDGTIDAIASDHAPHTDEEKD 275 (374)
T ss_pred cCCCCCH-HHHHHHHHHHhcCCceEEEcCCCCCCHHHcc
Confidence 8843211 3578999999999999999999987655443
No 96
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.6e-13 Score=118.97 Aligned_cols=237 Identities=19% Similarity=0.222 Sum_probs=137.0
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
.+|+|++|++.. .++.+++|.|+||+|.+|.+ .+. +.+.+++|.+|.+|+|||||.|+|....
T Consensus 2 ~~~~~~~i~t~~---~~~~~~~v~i~dg~I~~i~~-~~~-----p~~~e~id~~G~~l~PGfID~hihG~gG-------- 64 (380)
T COG1820 2 YALKNGRIFTGH---GVLDGGAVVIEDGKIEAVVP-AEL-----PADAEIIDLKGALLVPGFIDLHIHGGGG-------- 64 (380)
T ss_pred ceeeccEEEcCc---ceEECcEEEEcCCEEEEEec-CcC-----CCcceeecCCCCEecccEEEEeecCcCc--------
Confidence 578999999853 67888999999999999998 322 3467999999999999999999998662
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC-cCCHHHHHH---HHHHhCC-eEEEecccccCCC
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQHVSEMAK---AVELLGL-RACLVQSTMDCGE 175 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~-~~~~~~~~~---~~~~~g~-~~~~~~~~~~~g~ 175 (346)
..+.+ ..+.+. ...-++...+.|+|++-.-. ....+.+.+ ..++.-. ...-...+.-+||
T Consensus 65 ~~~~D-----------~~~~~~----l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP 129 (380)
T COG1820 65 ADFMD-----------AGSVET----LETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGP 129 (380)
T ss_pred ccccC-----------ccCHHH----HHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEeecC
Confidence 11111 001111 11122446678999986432 222332222 2211100 0000011333899
Q ss_pred CCCcccccCChHHHHH-HHHHHHHHHcCCCCCCeE-EEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHH
Q 019100 176 GLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIR-IWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253 (346)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~ 253 (346)
++++.+++++..+.++ ...+.++.+...+++.++ +-++|. ..-+. ++.+..+++|+.+.+ ..+.+..+..
T Consensus 130 ~ls~~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vTlAPE--~~~~~----e~i~~l~~~giivs~--GHS~Atye~~ 201 (380)
T COG1820 130 FLSPEKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVTLAPE--LDGTK----ELIRLLANAGIVVSI--GHSNATYEQA 201 (380)
T ss_pred ccCHhhccCCCHHHhCCCCHHHHHHHHhhccCceEEEEECCC--CCCCH----HHHHHHHhCCeEEEe--cCccccHHHH
Confidence 9999999999888886 556677778777776543 334442 11122 344455555655444 4445555555
Q ss_pred HHhcCCCCCHHH---------HHHHcCCCCC-----Ce---eEEEeccCChhhHHHHHhcC
Q 019100 254 MDTRKVDHGTVT---------FLDKIEFLQN-----NL---LSAHTVWVNHTEIGLLSRAG 297 (346)
Q Consensus 254 ~~~~g~~~~~~~---------~l~~~g~l~~-----~~---~~~H~~~~~~~~i~~l~~~g 297 (346)
.+++..+.+... ..++.|+.|. +. +++-+.|+++.-++.+.+..
T Consensus 202 ~~a~~~Ga~~~THlfNaMs~l~hREPGvvGA~L~~~~~~~eiIaDG~HVhP~~~~ia~~~k 262 (380)
T COG1820 202 RAAFEAGATFVTHLFNAMSGLHHREPGVVGAALDNPDVYAEIIADGVHVHPAAIRLALKAK 262 (380)
T ss_pred HHHHHhCccEEEeeccCCCCCCCCCCcccceeecCCCeEEEEEccCcccCHHHHHHHHhcc
Confidence 554332211110 1234444332 11 44567888887776665543
No 97
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.54 E-value=2.3e-12 Score=122.88 Aligned_cols=245 Identities=15% Similarity=0.138 Sum_probs=137.5
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~ 98 (346)
.+++|+|++|++.... .+ ..++|+|++|+|++|++..+. ....++||++|++|+|||||+|+|+..+
T Consensus 30 ~dllI~ng~vv~~~~~-~~-~~~~V~I~~GrI~~Vg~~~~~-----~~~~~vIDa~G~~v~PGlIDaHvHiess------ 96 (588)
T PRK10027 30 ADYIIDNVSILDLING-GE-ISGPIVIKGRYIAGVGAEYAD-----APALQRIDARGATAVPGFIDAHLHIESS------ 96 (588)
T ss_pred CCEEEECcEEEeCCCC-cE-EeeEEEEECCEEEEeCCCCCC-----CCCCeEEECCCCEEEECeEeccccCCcc------
Confidence 4689999999975322 33 457899999999999764321 1235899999999999999999999762
Q ss_pred CCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC--------CHHHHHHHHHHhCCeEEEeccc
Q 019100 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLVQST 170 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~--------~~~~~~~~~~~~g~~~~~~~~~ 170 (346)
..+++++. ..++..|+||+++.+.. ..+.+.+.....+++. ++.+
T Consensus 97 ------------------~~~p~~~a-------~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~--~~~~ 149 (588)
T PRK10027 97 ------------------MMTPVTFE-------TATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQ--YLQV 149 (588)
T ss_pred ------------------cCCHhHHH-------HHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCee--EEee
Confidence 11233321 24778999999985422 1233444555555544 3334
Q ss_pred ccCCCCCC-cccccCChHHHHHHHHHHHHHHcCCCCCCeEE--EEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCCh
Q 019100 171 MDCGEGLP-ASWAVRTTDDCIQSQKELYAKHHHAADGRIRI--WFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (346)
Q Consensus 171 ~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 247 (346)
..++|..+ .+..++... .++..++++ . ...+.. .+...++...+++.+.++.. + ++..+.-|+..-.
T Consensus 150 ps~vpa~~~~Et~Ga~~~--~~~~~~~l~---~--~~v~glgEvMn~~~V~~~d~~~~~ki~~-~--~~~~idGH~p~l~ 219 (588)
T PRK10027 150 SSCVPALEGCDVNGASFT--LEQMLAWRD---H--PQVTGLAEMMDYPGVISGQNALLDKLDA-F--RHLTLDGHCPGLG 219 (588)
T ss_pred cccCcCCcccccCCCcCC--HHHHHHHhc---C--CCceeEEeccCccccccCCHHHHHHHHH-h--CCCceECCCCCCC
Confidence 44444332 122111111 112222222 1 111111 12234555667888887663 3 7889999986443
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhhhccccccccHHHHHHc-C-Cc
Q 019100 248 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHA-D-IC 325 (346)
Q Consensus 248 ~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~-G-v~ 325 (346)
.. ....+...|+-+ .|-. .+.++...=.++|.++.+.-.|-.+ .+..+..++.. . -+
T Consensus 220 g~-------------~L~ay~aaGi~s-----DHE~-~t~eea~eklr~Gm~v~iRegS~~~--nl~~l~~~~~~~~~~~ 278 (588)
T PRK10027 220 GK-------------ELNAYIAAGIEN-----CHES-YQLEEGRRKLQLGMSLMIREGSAAR--NLNALAPLINEFNSPQ 278 (588)
T ss_pred hH-------------HHHHHHHcCCCC-----Cccc-CCHHHHHHHHHCCCEEEEeCCcccc--CHHHHHHHhhccCCCe
Confidence 21 223334555533 2332 3455544446678888766554321 22222222221 1 35
Q ss_pred EEEcCCCCC
Q 019100 326 VSLGTDGAP 334 (346)
Q Consensus 326 v~~GTD~~~ 334 (346)
+++-||...
T Consensus 279 ~~l~TDd~~ 287 (588)
T PRK10027 279 CMLCTDDRN 287 (588)
T ss_pred EEEEcCCCC
Confidence 788888764
No 98
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=99.51 E-value=9.8e-13 Score=116.99 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=92.6
Q ss_pred EEeecccccC---CHHHHHHHHHHHHHcC-CeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC
Q 019100 211 WFGIRQIMNA---TDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 286 (346)
Q Consensus 211 ~~~~~~~~~~---~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~ 286 (346)
++...+.... +...+..+++.|++.| +++.+|++|... +....+....+ ...+.||..+.
T Consensus 138 G~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~--------------~~~v~~~~~~~--~~RIgHg~~~~ 201 (305)
T cd00443 138 GIDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGN--------------REELLQALLLL--PDRIGHGIFLL 201 (305)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCC--------------hHHHHHHHHhc--cceeeceEecC
Confidence 4554444433 5778889999999999 999999998743 11222223333 44669999998
Q ss_pred h--hhHHHHHhcCCeEEEChhhhccc-cc----cccHHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 287 H--TEIGLLSRAGVKVSHCPASAMRM-LG----FAPIKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 287 ~--~~i~~l~~~g~~v~~~p~~~~~l-~~----~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
+ +++++++++++.+.+||.||..+ .. ..|+++++++|++|++|||.+..+++ +|.+||
T Consensus 202 ~~p~~~~~l~~~~i~ie~CP~SN~~~~~~~~~~~hP~~~~~~~G~~v~i~TDd~~~~~~-~l~~E~ 266 (305)
T cd00443 202 KHPELIYLVKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFGT-SLSEEY 266 (305)
T ss_pred CCHHHHHHHHHcCCEEEECcchhhhhcCCCChhhChHHHHHHCCCeEEEeCCCCcccCC-ChHHHH
Confidence 7 89999999999999999999877 22 36999999999999999999987766 998887
No 99
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.50 E-value=4.9e-12 Score=116.70 Aligned_cols=182 Identities=18% Similarity=0.295 Sum_probs=109.5
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEe-ccChhhhhhhcCCCCeEEecCCCEEeecccccccCCccccccc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAI-GQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v-~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g 96 (346)
..+++++|+++++.-.. .+ ..++|+|.+|||+.| ++.. .++.++||+.|+++.|||||+|+|+.+
T Consensus 23 ~adlv~~ng~ivdv~~g-ei-~~~dIaI~~grI~~v~~~~~-------~e~~~~iDa~g~yivPGfID~H~HIES----- 88 (584)
T COG1001 23 KADLVLKNGRIVDVVTG-EI-YKGDIAIAGGRIVGVIGEYR-------AEATEVIDAAGRYIVPGFIDAHLHIES----- 88 (584)
T ss_pred CCCEEEECCEEEEeeec-cE-EeeeEEEECCEEEEeecCcC-------cccceeecCCCCEeccceeecceeccc-----
Confidence 35799999999976432 34 467999999999996 3332 246789999999999999999999866
Q ss_pred ccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC--------cCCHHHHHHHHHHhCCeEEEec
Q 019100 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--------GQHVSEMAKAVELLGLRACLVQ 168 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~--------~~~~~~~~~~~~~~g~~~~~~~ 168 (346)
+.++|..+. +-.+..|+||+..=. ......+++.+....++.++.
T Consensus 89 -------------------Sm~tP~~FA-------~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~- 141 (584)
T COG1001 89 -------------------SMLTPSEFA-------RAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVM- 141 (584)
T ss_pred -------------------cccCHHHHH-------HHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEEe-
Confidence 345565533 346678999987432 122445566667666666543
Q ss_pred ccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCCh
Q 019100 169 STMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (346)
Q Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 247 (346)
...+-|..+.+..++... .+...++++.-.-.+-+- .+..+++..-+++.+. .++.++++|.+|.=|+..-.
T Consensus 142 -~pScVPat~~Et~Ga~l~--a~~i~e~~~~p~Vigl~E---~Mn~pgVi~~D~~~l~-kl~a~~~~~k~VdGHapgl~ 213 (584)
T COG1001 142 -LPSCVPATPFETSGAELT--AEDIKELLEHPEVIGLGE---MMNFPGVIEGDPDMLA-KLEAARKAGKPVDGHAPGLS 213 (584)
T ss_pred -cccCccCCccccCCceec--HHHHHHHhhCCCccchhh---hcCCchhccCCHHHHH-HHHHHHHcCCeecccCCCCC
Confidence 112222122111111111 112222222100000000 1233444555677665 67789999999999997654
No 100
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.43 E-value=3e-12 Score=119.56 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=72.1
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccc---cccc
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL---AKGI 97 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~---~~g~ 97 (346)
++|+|++|++.... ...+.++|+|+||+|+++++..+ ..+++||++|++|+|||||+|+|+.... .|+.
T Consensus 2 ~iIkng~I~dp~~~-~~~~~~dI~IedGkIveIg~~~~-------~~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~ 73 (556)
T TIGR03121 2 ILIKNGTVYDPANG-IDGEVMDIFIRDGKIVEPVSGGT-------KPAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLL 73 (556)
T ss_pred EEEEeEEEEcCCCC-ccccccEEEEECCEEEEecCCCC-------CCCeEEECCCCEEEeCEEeeeECCCcccccccccc
Confidence 68999999975321 11135799999999999986432 1347999999999999999999997621 1111
Q ss_pred cCCCChhHhhhhhccccccCCCch--HHHHHHHHHHHHHHhcCceEeeecC
Q 019100 98 ADDVDLMTWLHDRIWPYESNMTEE--DSYISTLLCGIELIHSGVTCFAEAG 146 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~GvTt~~d~~ 146 (346)
...+|..... +........ .....+.....++++.|+||+.|..
T Consensus 74 ----~pE~~~~~~~-~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa 119 (556)
T TIGR03121 74 ----RPEDHRRDPE-PRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAA 119 (556)
T ss_pred ----CHHHHhhcch-hhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCC
Confidence 1112221000 111111111 2234455566899999999999975
No 101
>PRK01211 dihydroorotase; Provisional
Probab=99.43 E-value=1.2e-11 Score=114.02 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=54.5
Q ss_pred eeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccCC
Q 019100 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM 118 (346)
Q Consensus 39 ~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
..++|+|+||+|++|++... ..++||++| +|+|||||+|+|+..-. ..
T Consensus 14 ~~~di~I~dGkI~~i~~~~~--------~~~~ida~g-~vlPG~ID~HvH~r~pg-----------------------~~ 61 (409)
T PRK01211 14 DYLEIEVEDGKIKSIKKDAG--------NIGKKELKG-AILPAATDIHVHFRTPG-----------------------ET 61 (409)
T ss_pred EEEEEEEECCEEEEecCCCC--------CceEEEecc-EEcCCeEEeeeccCCCC-----------------------Cc
Confidence 45799999999999986531 357899999 99999999999996510 01
Q ss_pred CchHHHHHHHHHHHHHHhcCceEeeecCc
Q 019100 119 TEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (346)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTt~~d~~~ 147 (346)
..+++...+ +.++..|||++.+|..
T Consensus 62 ~ked~~s~s----~AAaaGGvTtv~dmPn 86 (409)
T PRK01211 62 EKEDFSTGT----LSAIFGGTTFIMDMPN 86 (409)
T ss_pred ccCcHHHHH----HHHHcCCcEEEEECCC
Confidence 123333333 4577899999999974
No 102
>PRK04250 dihydroorotase; Provisional
Probab=99.40 E-value=1.5e-11 Score=113.26 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=58.9
Q ss_pred cCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCCCChh
Q 019100 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLM 104 (346)
Q Consensus 25 n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~ 104 (346)
++++++.+ .+ ..++|+|+||+|.+|++.. ....++||++|++|+|||||+|+|+... .
T Consensus 3 ~~~v~~~~---~~-~~~~i~i~~G~I~~i~~~~-------~~~~~~iD~~g~~v~PG~ID~HvH~~~~-------~---- 60 (398)
T PRK04250 3 EGKFLLKG---RI-VEGGIGIENGRISKISLRD-------LKGKEVIKVKGGIILPGLIDVHVHLRDF-------E---- 60 (398)
T ss_pred eEEEEECC---cE-EEEEEEEECCEEEEeeCCC-------CCCCeEEECCCCEEccCEEeccccccCC-------C----
Confidence 45777632 23 3689999999999997411 1245799999999999999999998330 0
Q ss_pred HhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc
Q 019100 105 TWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~ 147 (346)
....++. ....+.++..|+|++.++++
T Consensus 61 ------------~~~~e~~----~~~~~aa~~gGvTtv~~~p~ 87 (398)
T PRK04250 61 ------------ESYKETI----ESGTKAALHGGITLVFDMPN 87 (398)
T ss_pred ------------CCcHHHH----HHHHHHHHhCCeEEEEECCC
Confidence 0011221 22335688999999999974
No 103
>PTZ00124 adenosine deaminase; Provisional
Probab=99.34 E-value=8.5e-11 Score=106.02 Aligned_cols=120 Identities=19% Similarity=0.237 Sum_probs=86.9
Q ss_pred EEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCCh--hhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC-
Q 019100 210 IWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP--YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN- 286 (346)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~--~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~- 286 (346)
++++..|.... ...+..+++.|++.|+++.+|++|.. .... +..+..-.+++. .+.||..+.
T Consensus 194 vGiDLaG~E~~-~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~-------------~v~~ai~~l~~~-RIGHG~~~~~ 258 (362)
T PTZ00124 194 VGFDHAGHEVD-LKPFKDIFDYVREAGVNLTVHAGEDVTLPNLN-------------TLYSAIQVLKVK-RIGHGIRVAE 258 (362)
T ss_pred EEEeccCCCCC-cHHHHHHHHHHHHCCCCEEEEeCCCCCCCcch-------------hHHHHHHHhCCC-ccccccccCC
Confidence 34555444332 24577899999999999999999852 1111 111122223444 558999984
Q ss_pred -hhhHHHHHhcCCeEEEChhhhcccc-----ccccHHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 287 -HTEIGLLSRAGVKVSHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 287 -~~~i~~l~~~g~~v~~~p~~~~~l~-----~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
++.+..++++++.+.+||.||..+. ...|++.++++|++|+++||.+..+++ +|.+||
T Consensus 259 d~~l~~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~~t-~l~~Ey 322 (362)
T PTZ00124 259 SQELIDMVKEKDILLEVCPISNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMFLT-NINDDY 322 (362)
T ss_pred CHHHHHHHHHcCCeEEECCcchhhhhcCCchhhHHHHHHHHCCCcEEEeCCCccccCC-ChhHHH
Confidence 6779999999999999999997761 235899999999999999999976654 787776
No 104
>PRK00369 pyrC dihydroorotase; Provisional
Probab=99.34 E-value=6.2e-11 Score=108.66 Aligned_cols=75 Identities=24% Similarity=0.220 Sum_probs=53.9
Q ss_pred eeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEec-CCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccC
Q 019100 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDL-QSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESN 117 (346)
Q Consensus 39 ~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~-~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 117 (346)
.+..|.+++++|..|++.. +..+++||+ +|++|+|||||.|+|+... | .
T Consensus 12 ~~~~~~~~~~~~~~i~~~~-------~~~~~~id~~~G~~vlPG~ID~HvH~r~p---g--------------------~ 61 (392)
T PRK00369 12 GKEIKEICINFDRRIKEIK-------SRCKPDLDLPQGTLILPGAIDLHVHLRGL---K--------------------L 61 (392)
T ss_pred CCceEEEeeeeeeeEeecc-------CCCCceeecCCCCEEeCCEEEcccccCCC---C--------------------C
Confidence 3457888899998888753 125689999 6999999999999999651 0 0
Q ss_pred CCchHHHHHHHHHHHHHHhcCceEeeecCc
Q 019100 118 MTEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (346)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~ 147 (346)
...+++...+ +.++..|+|++.+|++
T Consensus 62 ~~~ed~~sgs----~AAa~GGvTtv~~mPn 87 (392)
T PRK00369 62 SYKEDVASGT----SEAAYGGVTLVADMPN 87 (392)
T ss_pred cccccHHHHH----HHHHhCCcEEEEECCC
Confidence 0123333333 4577899999999974
No 105
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.33 E-value=1.4e-11 Score=114.61 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=47.9
Q ss_pred EEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 23 LHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 23 i~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
|+|++|++.... ......+|+|+||+|++|++.. ...++||++|++|+|||||+|+|+..
T Consensus 1 Ikng~V~d~~~~-~~~~~~dI~IedGkIv~Vg~~~--------~~~~vID~~G~~VmPGfID~HtH~~g 60 (541)
T cd01304 1 IKNGTVYDPLNG-INGEKMDIFIRDGKIVESSSGA--------KPAKVIDASGKVVMAGGVDMHSHIAG 60 (541)
T ss_pred CEEEEEEcCCCc-ccccccEEEEECCEEEEEccCC--------CCCeEEECCCCEEECCeeeeeeCccc
Confidence 578999975432 1135789999999999998642 13579999999999999999999975
No 106
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.31 E-value=4e-11 Score=102.20 Aligned_cols=57 Identities=37% Similarity=0.504 Sum_probs=47.3
Q ss_pred EEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCC
Q 019100 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (346)
Q Consensus 22 li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~ 89 (346)
+|.|++|+..| .++ .+.|+|+||+|..|.+... ....-+|++|.+++|||||+|+--
T Consensus 2 ~lsnarivl~D---~v~-~gsv~i~DG~Ia~i~~g~s-------~~~~~~d~eGd~LLPGlIeLHtD~ 58 (377)
T COG3454 2 ILSNARIVLED---RVV-NGSVLIRDGLIADIDEGIS-------PLAAGIDGEGDYLLPGLIELHTDN 58 (377)
T ss_pred ccccceEEeec---cee-eeeEEEecceEeeeccccC-------cccccccCCCCeecccchhhcchh
Confidence 68899999866 454 4899999999999998753 224678999999999999999854
No 107
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=99.30 E-value=1.1e-10 Score=105.15 Aligned_cols=125 Identities=12% Similarity=0.117 Sum_probs=90.6
Q ss_pred EEEeecccc--cCCHHHHHHHHHHHHHcC--CeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccC
Q 019100 210 IWFGIRQIM--NATDRLLLETRDMAREFK--TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV 285 (346)
Q Consensus 210 ~~~~~~~~~--~~~~~~l~~~~~~a~~~g--~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~ 285 (346)
.+++..+.. ..+++.+..+++.|++.| +++.+|++|...... .....+.+.. .++++ .+.||..+
T Consensus 164 vGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~---------~~~~~v~~al-~lg~~-RIGHG~~~ 232 (345)
T cd01321 164 AGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGT---------ETDENLVDAL-LLNTK-RIGHGFAL 232 (345)
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCC---------CChhHHHHHH-HhCCC-cCcccccc
Confidence 345555544 346788889999999999 999999998752000 0011111222 24545 55899998
Q ss_pred C--hhhHHHHHhcCCeEEEChhhhccc---c--ccccHHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 286 N--HTEIGLLSRAGVKVSHCPASAMRM---L--GFAPIKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 286 ~--~~~i~~l~~~g~~v~~~p~~~~~l---~--~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
. ++.++.++++++.+.+||.||..+ . ..-|++.++++||+|+++||.+...++.+|.+||
T Consensus 233 ~~dp~ll~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~Ey 299 (345)
T cd01321 233 PKHPLLMDLVKKKNIAIEVCPISNQVLGLVSDLRNHPAAALLARGVPVVISSDDPGFWGAKGLSHDF 299 (345)
T ss_pred CcCHHHHHHHHHcCCeEEECcchhhhhccccchhhChHHHHHHCCCeEEEeCCCcchhCCCCchHHH
Confidence 6 567999999999999999999875 1 2358999999999999999999765544777776
No 108
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.28 E-value=1.9e-10 Score=107.29 Aligned_cols=201 Identities=14% Similarity=0.189 Sum_probs=105.4
Q ss_pred ecCCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc----
Q 019100 72 DLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---- 147 (346)
Q Consensus 72 D~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~---- 147 (346)
|++|++|+|||||+|+|+... ..+++. + .+.++..|||++.+.+.
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~------------------------~~~~~~-~------~~~a~~~GvTtvv~~p~~~~~ 49 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESS------------------------MLTPSE-F------AKAVLPHGTTTVIADPHEIAN 49 (422)
T ss_pred CCCCCEEccCEEEccCCcCCC------------------------CCChHH-H------HHHHHCCCcEEEEeCCCCCCc
Confidence 789999999999999999662 112222 1 24678899999998641
Q ss_pred -CC---HHHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEE--EeecccccCC
Q 019100 148 -QH---VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIW--FGIRQIMNAT 221 (346)
Q Consensus 148 -~~---~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~ 221 (346)
.. .+.+.+......++.+.. ...+.+..+.+..... -.+.+..++++. .+.+.+. +...+. ...
T Consensus 50 v~g~~~~~~~~~~a~~~p~~~~~~--~p~~vp~t~~e~~g~~--~~~~~i~~l~~~-----~~vvglgE~md~~~v-~~~ 119 (422)
T cd01295 50 VAGVDGIEFMLEDAKKTPLDIFWM--LPSCVPATPFETSGAE--LTAEDIKELLEH-----PEVVGLGEVMDFPGV-IEG 119 (422)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEe--CCCcCCCCCCCCCCCc--CCHHHHHHHhcC-----CCCcEEEEeccCccc-cCC
Confidence 12 233344333344433222 1111111111110010 011222222221 1222111 111111 235
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEE
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~ 301 (346)
++.+.+.++.|+++|+++.+|+..... +. ....+ +.|. .. .|.....++.++++ ++|+.+.
T Consensus 120 ~~~l~~~i~~A~~~g~~v~~Ha~g~~~--~~----------L~a~l-~aGi---~~--dH~~~~~eea~e~l-~~G~~i~ 180 (422)
T cd01295 120 DDEMLAKIQAAKKAGKPVDGHAPGLSG--EE----------LNAYM-AAGI---ST--DHEAMTGEEALEKL-RLGMYVM 180 (422)
T ss_pred cHHHHHHHHHHHhCCCEEEEeCCCCCH--HH----------HHHHH-HcCC---CC--CcCCCcHHHHHHHH-HCCCEEE
Confidence 667888999999999999999976541 11 11112 2333 11 47665555556655 7999999
Q ss_pred EChhhhccccccccHHHHHH--cCCcEEEcCCCCC
Q 019100 302 HCPASAMRMLGFAPIKEMLH--ADICVSLGTDGAP 334 (346)
Q Consensus 302 ~~p~~~~~l~~~~~~~~~~~--~Gv~v~~GTD~~~ 334 (346)
++|.+... ....+.+.+. .+.+++++||.+.
T Consensus 181 i~~g~~~~--~~~~~~~~l~~~~~~~i~l~TD~~~ 213 (422)
T cd01295 181 LREGSIAK--NLEALLPAITEKNFRRFMFCTDDVH 213 (422)
T ss_pred EECcccHh--hHHHHHHhhhhccCCeEEEEcCCCC
Confidence 88754211 1111212222 5899999999864
No 109
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=99.27 E-value=1.2e-10 Score=108.49 Aligned_cols=108 Identities=20% Similarity=0.210 Sum_probs=77.1
Q ss_pred eecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHH
Q 019100 213 GIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGL 292 (346)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~ 292 (346)
..++....+++.+.++++.|.+.|+++.+|+.++.. ...+ ++.+++... ...++|+..++++++++
T Consensus 215 ~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a-~~~~----------l~a~~~~~~---~~~i~h~~~~~~~~~~~ 280 (404)
T PF07969_consen 215 HISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRA-IDEA----------LDAIEAARA---RGRIEHAELIDPDDIER 280 (404)
T ss_dssp EETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHH-HHHH----------HHHHHHHTC---CHEEEEHCBCCHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcCCeeEEEEcCCch-HHhH----------HHHHHhhcc---cceeeccccCCHHHHHH
Confidence 344556778888999999999999999999976554 2222 222233322 12779999999999999
Q ss_pred HHhcCCeEEEChh--------h-hccc-----cccccHHHHHHcCCcEEEcCCCCC
Q 019100 293 LSRAGVKVSHCPA--------S-AMRM-----LGFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 293 l~~~g~~v~~~p~--------~-~~~l-----~~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
+++.|+.+.++|. . ...+ ....+++.++++|++|++|||++.
T Consensus 281 ~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gsD~p~ 336 (404)
T PF07969_consen 281 MAELGVTASVQPHFLFSWGGEWYEERLGPERARRIYPIRSLLDAGVRVALGSDAPV 336 (404)
T ss_dssp HHHHTTEEEECCTHHHHETEETHHHHHHHHCGGGBTHHHHHHHCTTEEEE--TTTT
T ss_pred HHHhCCccccChhHhhhccchhhhhhhhhHHHHHHhHHHHHHhccCceecCcCCcc
Confidence 9999999999991 0 0011 235799999999999999999885
No 110
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=99.19 E-value=3.6e-10 Score=99.98 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=85.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC--hhhHHHHHh
Q 019100 218 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSR 295 (346)
Q Consensus 218 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~--~~~i~~l~~ 295 (346)
....++.+..+++++++.|+.+.+||+|... -+. ..+.++..+. . .+.||..+- ++.+.++++
T Consensus 180 ~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~-~~~----------i~~al~~~~~---~-rI~HGi~~~~d~~L~~~l~~ 244 (345)
T COG1816 180 SGYPPELFVSLFKLARDNGLKLTIHAGEAGG-PES----------IRDALDLLGA---E-RIGHGIRAIEDPELLYRLAE 244 (345)
T ss_pred ccCCHHHHHHHHHHHHHcCceEEEeccccCC-cHH----------HHHHHHHhch---h-hhccccccccCHHHHHHHHH
Confidence 3557888999999999999999999986553 111 2223333333 2 457988764 455899999
Q ss_pred cCCeEEEChhhhccc---c--ccccHHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 296 AGVKVSHCPASAMRM---L--GFAPIKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 296 ~g~~v~~~p~~~~~l---~--~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
.++.+.+||.||..+ . ..-|+++|+++|++|+++||.++.+++ .+..||
T Consensus 245 ~qI~levCP~SNi~~~~v~~~~~hPf~~~~d~Gv~VsLnTDdp~~f~~-~l~~Ey 298 (345)
T COG1816 245 RQIPLEVCPLSNIQLGVVPSLAKHPFKKLFDAGVKVSLNTDDPLYFGT-PLIEEY 298 (345)
T ss_pred hCCeeEECCcchhhcccccchhhCcHHHHHHcCCceEEcCCChhhcCC-chHHHH
Confidence 999999999999765 2 235899999999999999999998776 777766
No 111
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=99.17 E-value=1.3e-09 Score=98.57 Aligned_cols=201 Identities=17% Similarity=0.212 Sum_probs=109.7
Q ss_pred CEEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCcC-----CH
Q 019100 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HV 150 (346)
Q Consensus 76 ~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-----~~ 150 (346)
++|+||+||.|+|+..... ....+++... .+.++..|+|++.+|.+. ..
T Consensus 1 ~~vlPG~iD~HvH~r~pg~----------------------~~~~e~~~t~----t~aA~~GG~Ttv~~mpn~~p~~~~~ 54 (337)
T cd01302 1 LLVLPGFIDIHVHLRDPGG----------------------TTYKEDFESG----SRAAAAGGVTTVIDMPNTGPPPIDL 54 (337)
T ss_pred CEecCCeeEeeeccCCCCC----------------------CCchhHHHHH----HHHHHhCCCcEEEECCCCCCCCCcH
Confidence 4799999999999965110 0012333333 356788999999999642 22
Q ss_pred HHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecc-c-ccCCHHHHHHH
Q 019100 151 SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ-I-MNATDRLLLET 228 (346)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~ 228 (346)
+.+....+....+......+... .... ..+.+..++.+ .+..-+++++.... . ...+.+.+.+.
T Consensus 55 ~~~~~~~~~a~~~~~~d~~~~~~---~~~~-------~~~~el~~l~~----~Gv~g~K~f~~~~~~~~~~~~~~~l~~~ 120 (337)
T cd01302 55 PAIELKIKLAEESSYVDFSFHAG---IGPG-------DVTDELKKLFD----AGINSLKVFMNYYFGELFDVDDGTLMRT 120 (337)
T ss_pred HHHHHHHHHhCcCcEeeEEEEEe---ccCc-------cCHHHHHHHHH----cCCcEEEEEEeccCCCccccCHHHHHHH
Confidence 33323333322222111111100 1111 01222222221 22233555543221 1 15577888889
Q ss_pred HHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh-hhHHHHHhcCC--eEEEChh
Q 019100 229 RDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGV--KVSHCPA 305 (346)
Q Consensus 229 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~-~~i~~l~~~g~--~v~~~p~ 305 (346)
++.+++.|.++.+|+. . ...+.+..| .+.++.|...... +.+..+++.|+ ...+||.
T Consensus 121 ~~~~~~~g~~v~~H~E---r--------------~~~la~~~g---~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph 180 (337)
T cd01302 121 FLEIASRGGPVMVHAE---R--------------AAQLAEEAG---ANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPH 180 (337)
T ss_pred HHHHHhcCCeEEEeHH---H--------------HHHHHHHhC---CcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChh
Confidence 9999999999999985 0 333334444 3667778764332 33555566664 4456774
Q ss_pred hhc----c-------------c---cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 306 SAM----R-------------M---LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 306 ~~~----~-------------l---~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
.-. . + .....+.+.++.|+...++||+.|.+
T Consensus 181 ~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~ 231 (337)
T cd01302 181 HLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHS 231 (337)
T ss_pred hheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCC
Confidence 210 0 0 01234567889999999999999854
No 112
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.15 E-value=5.9e-11 Score=104.62 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=53.5
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
-+++|+++.|+++.+..+ ...+|.|.||+|++|+....... -..++||+.|+||.|||||.|+|-+.
T Consensus 6 YD~ViR~g~ifDGtGnp~--f~tdvgIrDGvIaav~kg~~dg~----~~~eevDaagriVaPGFIDvHtHyD~ 72 (579)
T COG3653 6 YDVVIRDGLIFDGTGNPP--FTTDVGIRDGVIAAVAKGALDGT----GCPEEVDAAGRIVAPGFIDVHTHYDA 72 (579)
T ss_pred eeEEEeeceEEeCCCCCc--cccccccccceEEEEeccccccc----CCCeeecccCcEecccEEEeeecccc
Confidence 478999999997655433 56799999999999998653211 12389999999999999999999765
No 113
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=99.14 E-value=5.9e-10 Score=100.85 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=111.7
Q ss_pred CchHHHHHHHHHHHHHHhcCceEeeec---------Cc-CCHHH--------HHHHHHHhCCeEEEecccccCCCCCCcc
Q 019100 119 TEEDSYISTLLCGIELIHSGVTCFAEA---------GG-QHVSE--------MAKAVELLGLRACLVQSTMDCGEGLPAS 180 (346)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTt~~d~---------~~-~~~~~--------~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 180 (346)
+++..+......+.++.+.||..+--. ++ ...+. +.+.....++...+-...... .
T Consensus 72 ~~e~~~~~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~i~~~li~~~~R~---~--- 145 (331)
T PF00962_consen 72 TPEDLRRYAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEKEFGIKVRLIISVLRH---F--- 145 (331)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEETT---S---
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhcccccccccccccccccc---c---
Confidence 556655556667788889998876422 11 11221 122233445444332211110 0
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeccc-ccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCC
Q 019100 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259 (346)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~ 259 (346)
..+......++...+... ..+. +...+. ....+..+..+++.|++.|+++.+|++|.....
T Consensus 146 -----~~~~~~~~~~~~~~~~~~--~vvG--~dl~g~E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~--------- 207 (331)
T PF00962_consen 146 -----PDEWAEEIVELASKYPDK--GVVG--FDLAGDEDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPE--------- 207 (331)
T ss_dssp -----THHHHHHHHHHHHHTTTT--TEEE--EEEESSTTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHH---------
T ss_pred -----hHHHHHHHHHHHhhcccc--eEEE--EEecCCcccCchHHHHHHHhhhcccceeecceecccCCcc---------
Confidence 234444555555554432 2333 443332 223344477899999999999999999877421
Q ss_pred CCCHHHHHHHcCCCCCCeeEEEeccCC--hhhHHHHHhcCCeEEEChhhhccc---c--ccccHHHHHHcCCcEEEcCCC
Q 019100 260 DHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM---L--GFAPIKEMLHADICVSLGTDG 332 (346)
Q Consensus 260 ~~~~~~~l~~~g~l~~~~~~~H~~~~~--~~~i~~l~~~g~~v~~~p~~~~~l---~--~~~~~~~~~~~Gv~v~~GTD~ 332 (346)
...+..-.+++. .+.||..+. ++.++++++.++.+.+||.||..+ . ..-|++.++++|++|+++||.
T Consensus 208 -----~~~~ai~~l~~~-RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~~~~~hP~~~~~~~gv~v~i~TDd 281 (331)
T PF00962_consen 208 -----HIRDAILLLGAD-RIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQLGAVPSYEEHPLRKLLDAGVPVSINTDD 281 (331)
T ss_dssp -----HHHHHHHTST-S-EEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSSTGGG-CHHHHHHTT-EEEE--BS
T ss_pred -----cccchhhhccce-eecchhhhhhhhHHHHHHHHhCCCeeeCCCcCcccceeeecchhHHHHHHHcCCceeccCCC
Confidence 111222335555 669999986 455899999999999999999776 1 235999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 019100 333 APSNNRMSIGPFY 345 (346)
Q Consensus 333 ~~~~~~~~~~~~~ 345 (346)
+...++ +|.+||
T Consensus 282 ~~~~~~-~l~~ey 293 (331)
T PF00962_consen 282 PGVFGT-TLSDEY 293 (331)
T ss_dssp HHHHT--SHHHHH
T ss_pred ccccCC-CcHHHH
Confidence 864433 455544
No 114
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=99.13 E-value=1.4e-09 Score=95.25 Aligned_cols=163 Identities=20% Similarity=0.308 Sum_probs=110.5
Q ss_pred ceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhh--hh---hhcCCCCeEEecCCCEEeecccccccCCcccc
Q 019100 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI--LQ---QFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (346)
Q Consensus 19 ~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~--~~---~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 93 (346)
.+++|+|+.|++-. .+ .+.||-|+||||+.||..... .. ...+...++|-+.|+++.-|-||+|+|+..
T Consensus 67 ~D~VITNa~IiD~~---Gi-~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~-- 140 (568)
T COG0804 67 LDLVITNALIIDYW---GI-VKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFIC-- 140 (568)
T ss_pred ccEEEeeeEEEecc---ce-EEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEec--
Confidence 57999999999642 34 468999999999999975432 11 012334578889999999999999999866
Q ss_pred cccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC---------------cCCHHHHHHHHH
Q 019100 94 AKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG---------------GQHVSEMAKAVE 158 (346)
Q Consensus 94 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~---------------~~~~~~~~~~~~ 158 (346)
|+.. .+++.+|+||+..-+ .++...+++.++
T Consensus 141 --------------------------Pqqi--------~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d 186 (568)
T COG0804 141 --------------------------PQQI--------EEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAAD 186 (568)
T ss_pred --------------------------HHHH--------HHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhh
Confidence 3332 468899999986432 234566777776
Q ss_pred HhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCe
Q 019100 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 238 (346)
Q Consensus 159 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 238 (346)
...+..-+. |.+.... . ..|.++..+.+ +++..|.-+..+|..++..+..|.+++++
T Consensus 187 ~~p~N~g~l------gKGn~s~------~------~~L~Eqi~aGa-----~GlKlHEDWG~TpaaI~~~L~VAD~~Dvq 243 (568)
T COG0804 187 GLPMNIGFL------GKGNASN------P------APLAEQIEAGA-----IGLKLHEDWGATPAAIDTCLSVADEYDVQ 243 (568)
T ss_pred cCceeeEEe------ecCCCCC------c------hhHHHHHhhcc-----ceeEeecccCCCHHHHHHHHhhhhhhceE
Confidence 665554331 1111100 0 11222222211 23566777888999999999999999999
Q ss_pred EEEEec
Q 019100 239 IHMHVA 244 (346)
Q Consensus 239 v~~H~~ 244 (346)
|.+|..
T Consensus 244 VaiHtD 249 (568)
T COG0804 244 VAIHTD 249 (568)
T ss_pred EEEeec
Confidence 999963
No 115
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=99.07 E-value=6.7e-09 Score=91.28 Aligned_cols=66 Identities=15% Similarity=0.306 Sum_probs=51.8
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcc
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 91 (346)
++.++|||+.|+++-.+-. -+..||-|+||+|++-..-. +..+.|||+.|+++|||-||.|+|...
T Consensus 2 ~~e~~IKNg~V~dPlngin-gE~MDI~vkdGKIVe~sev~-------~~~aKVIDA~gklvm~GGvD~HsHvAG 67 (575)
T COG1229 2 AMEILIKNGIVYDPLNGIN-GEKMDICVKDGKIVEESEVS-------ESKAKVIDASGKLVMPGGVDSHSHVAG 67 (575)
T ss_pred CceEEeecCEEecCccCCC-CceeeEEeecCeEeeecccc-------cccceEEeccCcEEecCcccccccccc
Confidence 4579999999996432111 25679999999999865432 235789999999999999999999975
No 116
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=99.06 E-value=8.6e-09 Score=91.73 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCe
Q 019100 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 299 (346)
Q Consensus 220 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~ 299 (346)
.+.+.++++++.|+++|+++.+|+.++....+. ..+.|.. +++|. .+.+.+..+++.|+.
T Consensus 160 ~~~~~~~~iv~~A~~~gl~vasH~d~~~~~v~~--------------a~~~Gv~----~~E~p--~t~e~a~~a~~~G~~ 219 (325)
T cd01306 160 YAPANRSELAALARARGIPLASHDDDTPEHVAE--------------AHELGVV----ISEFP--TTLEAAKAARELGLQ 219 (325)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEecCCChHHHHH--------------HHHCCCe----eccCC--CCHHHHHHHHHCCCE
Confidence 357889999999999999999999876543332 2333443 23453 678889999999999
Q ss_pred EEEChhhhccc---cccccHHHHHHcCCcEEEcCCCCCC
Q 019100 300 VSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 300 v~~~p~~~~~l---~~~~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
+++++....+. ++..++++++++|+.+++|||+.+.
T Consensus 220 vv~gapn~lrg~s~~g~~~~~~ll~~Gv~~al~SD~~p~ 258 (325)
T cd01306 220 TLMGAPNVVRGGSHSGNVSARELAAHGLLDILSSDYVPA 258 (325)
T ss_pred EEecCcccccCccccccHhHHHHHHCCCeEEEEcCCCcH
Confidence 99887543332 3567899999999999999999753
No 117
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=99.05 E-value=1.4e-08 Score=92.64 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCC-----CCC--------HHHHHHHcCCCCCCeeEEEeccCC
Q 019100 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV-----DHG--------TVTFLDKIEFLQNNLLSAHTVWVN 286 (346)
Q Consensus 220 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~-----~~~--------~~~~l~~~g~l~~~~~~~H~~~~~ 286 (346)
.+...|.++++.+. ..+.+|+-+ ..-........+. ..+ ..+.+.-....+.++++.|.+..
T Consensus 108 ~~~~~l~~~~~~~~---~~v~~H~E~-~~l~~~~~~~~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~- 182 (361)
T cd01318 108 DDEETLERIFAEGS---VLVTFHAED-EDRLRENRKELKGESAHPRIRDAEAAAVATARALKLARRHGARLHICHVSTP- 182 (361)
T ss_pred CCHHHHHHHHHhcC---CeEEEeCCC-hHHHHHHHhhhhhccCCCCcCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCH-
Confidence 46777777777764 789999844 3221111111110 000 01112222224457777887743
Q ss_pred hhhHHHHHhc--CCeEEEChhhh-----c--cccc----ccc---------HHHHHHcCCcEEEcCCCCCCC
Q 019100 287 HTEIGLLSRA--GVKVSHCPASA-----M--RMLG----FAP---------IKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 287 ~~~i~~l~~~--g~~v~~~p~~~-----~--~l~~----~~~---------~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
+.++++++. ++...+||..- . .... .+| +.++++.|+..++|||+.|..
T Consensus 183 -~~~~~i~~~k~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~ 253 (361)
T cd01318 183 -EELKLIKKAKPGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHT 253 (361)
T ss_pred -HHHHHHHHhCCCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCC
Confidence 467777766 88999999521 0 0000 123 455689999999999988743
No 118
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=99.03 E-value=4.5e-08 Score=87.01 Aligned_cols=198 Identities=11% Similarity=0.063 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhcCceEeeecCcC----CHHHHHHHHHHhCCeEEEecccccCCCCCCcccc-cCChHHHHHHHHHHHH
Q 019100 124 YISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA-VRTTDDCIQSQKELYA 198 (346)
Q Consensus 124 ~~~~~~~~~~~l~~GvTt~~d~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~ 198 (346)
...+...+.++.++|+|++.+.+.. ......+.....+++.+.+..+.... ..+.+. ....++..+...+.+.
T Consensus 31 ~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~--~~~~~~~~~~~~~l~~~~~~~l~ 108 (293)
T cd00530 31 VEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDA--FYPEWVRLRSVEELTDMLIREIE 108 (293)
T ss_pred HHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCc--cChHHHhhCCHHHHHHHHHHHHH
Confidence 3455667788999999999998743 34566777777887765543332111 001111 1111221111111111
Q ss_pred H-HcCCCC--CCeEEEEeec-ccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCC
Q 019100 199 K-HHHAAD--GRIRIWFGIR-QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQ 274 (346)
Q Consensus 199 ~-~~~~~~--~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~ 274 (346)
. ...... +.++ .++.. .......+.+++.+++|+++|++|++|+.+...... . .++.+.+.|+..
T Consensus 109 ~~~~~~~i~~~~IG-Eigld~~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~---~-------~l~~l~~~g~~~ 177 (293)
T cd00530 109 EGIEGTGIKAGIIK-EAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGL---E-------QLRILEEEGVDP 177 (293)
T ss_pred hccccCCcCceEEE-EeecCCCCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccH---H-------HHHHHHHcCCCh
Confidence 1 111100 1110 12221 112223457889999999999999999976411111 1 556677777765
Q ss_pred CCeeEEEec-cCChhhHHHHHhcCCeEEEChhhhcc---c----cccccHHHHHHcCC--cEEEcCCCCC
Q 019100 275 NNLLSAHTV-WVNHTEIGLLSRAGVKVSHCPASAMR---M----LGFAPIKEMLHADI--CVSLGTDGAP 334 (346)
Q Consensus 275 ~~~~~~H~~-~~~~~~i~~l~~~g~~v~~~p~~~~~---l----~~~~~~~~~~~~Gv--~v~~GTD~~~ 334 (346)
.+.++.|+. ..+.+++..+++.|+.+.++...... . .....++++++.|. ++.++||++.
T Consensus 178 ~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~ 247 (293)
T cd00530 178 SKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFR 247 (293)
T ss_pred hheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCc
Confidence 567889998 45678899999999999888644221 1 01335788889987 7899999874
No 119
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=9.8e-09 Score=85.55 Aligned_cols=144 Identities=21% Similarity=0.208 Sum_probs=89.0
Q ss_pred EEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChhhhhhhcCCCCeEEecCCCEEeecccccccCCcccccccccCC
Q 019100 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (346)
Q Consensus 21 ~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~ 100 (346)
+-+.|++|+.. +++ ...+++|+||||+.-.+---.. ...+++.|||+|+++.|||||....... +
T Consensus 14 lQFtNCrilR~---g~l-~~edlWVR~GRIldpe~vFFeE---rt~Ad~riDCgG~IlaPGfIDlQiNGGf--------G 78 (407)
T KOG3892|consen 14 LQFTNCRILRG---GKL-LREDLWVRGGRILDPEKVFFEE---RTVADERIDCGGRILAPGFIDLQINGGF--------G 78 (407)
T ss_pred eeeeeeEEeeC---Cce-eehheeEeCCeecCccccccee---ccchhheeccCCeeecCceEEEEecCcc--------c
Confidence 57899999963 233 5679999999999866422100 1345789999999999999999998654 1
Q ss_pred CChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecC-cCCHHHHHHHHHHh-----CCeEEEecccccCC
Q 019100 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQHVSEMAKAVELL-----GLRACLVQSTMDCG 174 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~-~~~~~~~~~~~~~~-----g~~~~~~~~~~~~g 174 (346)
.++ ..+.++........+++.++.|+|+++.-. ....+.+-..+-.. +....-...+--+|
T Consensus 79 vDF-------------S~dte~~~eGvAlVAr~ll~hGvtsf~Pt~~tsp~~~YHkilP~ip~~~~~p~GaG~LG~HlEG 145 (407)
T KOG3892|consen 79 VDF-------------SQDTEDVGEGVALVARQLLSHGVTSFCPTLVTSPPEVYHKILPQIPVKSGGPHGAGVLGLHLEG 145 (407)
T ss_pred ccc-------------ccchhhhhhhHHHHHHHHHhcCCCcCCCccccCCchhhhhhccccccccCCCCccceeeeeccC
Confidence 111 122344444555567899999999987631 11111111111110 00000001133388
Q ss_pred CCCCcccccCChHHHHHH
Q 019100 175 EGLPASWAVRTTDDCIQS 192 (346)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~ 192 (346)
|+++.+.++.+++..++.
T Consensus 146 PFIs~~KrG~HPE~~i~s 163 (407)
T KOG3892|consen 146 PFISREKRGAHPEAHIRS 163 (407)
T ss_pred CccChhhcCCCHHHHHhc
Confidence 899999999999888763
No 120
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=98.86 E-value=3.1e-08 Score=92.70 Aligned_cols=125 Identities=10% Similarity=0.103 Sum_probs=87.9
Q ss_pred EEEeecccc--cCCHHHHHHHHH-HHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC
Q 019100 210 IWFGIRQIM--NATDRLLLETRD-MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 286 (346)
Q Consensus 210 ~~~~~~~~~--~~~~~~l~~~~~-~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~ 286 (346)
.+++..|.. ..+...+...+. .+++.|+++.+|++|+..... .....+.+.. +++.+ .|.||..+.
T Consensus 291 vGfDL~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~---------~~d~nl~dAI-lLg~~-RIGHG~~l~ 359 (479)
T TIGR01431 291 AGFDLVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQGT---------TVDENLIDAL-LLNTT-RIGHGFALV 359 (479)
T ss_pred EEEeccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCC---------CchhHHHHHH-HcCCc-cccCccccc
Confidence 345554433 335666666655 455599999999998752100 0022334444 56656 559999986
Q ss_pred --hhhHHHHHhcCCeEEEChhhhccc---cc--cccHHHHHHcCCcEEEcCCCCCCCCCCCCCCCC
Q 019100 287 --HTEIGLLSRAGVKVSHCPASAMRM---LG--FAPIKEMLHADICVSLGTDGAPSNNRMSIGPFY 345 (346)
Q Consensus 287 --~~~i~~l~~~g~~v~~~p~~~~~l---~~--~~~~~~~~~~Gv~v~~GTD~~~~~~~~~~~~~~ 345 (346)
++.++.++++++.+.+||.||..+ .+ .-|++.|+++||+|+++||.++..++.+|-.+|
T Consensus 360 ~~P~l~~~vke~~I~lEvCP~SN~~l~~v~~~~~HPl~~lla~Gvpv~InSDDP~~~~~t~Ls~ef 425 (479)
T TIGR01431 360 KHPLVLQMLKERNIAVEVNPISNQVLQLVADLRNHPCAYLFADNYPMVISSDDPAFWGATPLSHDF 425 (479)
T ss_pred CCHHHHHHHHHhCCeEEECccchhhhcccCCcccChHHHHHHCCCcEEEeCCCccccCCCCchHHH
Confidence 677999999999999999999765 22 358999999999999999999866554565555
No 121
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=98.72 E-value=3.3e-07 Score=81.62 Aligned_cols=192 Identities=18% Similarity=0.210 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHhcCceEeeec--C-------c-CCHHH--------HHHHHHHhCCeEEEecccccCCCCCCccccc
Q 019100 122 DSYISTLLCGIELIHSGVTCFAEA--G-------G-QHVSE--------MAKAVELLGLRACLVQSTMDCGEGLPASWAV 183 (346)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTt~~d~--~-------~-~~~~~--------~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~ 183 (346)
.++.-....++++.+.||-.+--. . + ...+. .-+..+..++...+ +++.-.+.+.+
T Consensus 118 ~~~~~~y~~~eef~~dgVvY~E~Rt~~p~l~~~~G~~t~e~~v~~~~~~~e~~~~~fpI~skl---I~~~~R~~~~e--- 191 (399)
T KOG1097|consen 118 AFRDYAYEALEEFAEDGVVYLEVRTYPPQLYTADGDITPEDVVAIVIAALEKAKRDFPIKSKL---IMCCIRHMPPE--- 191 (399)
T ss_pred HHHHHHHHHHHHHHHcCceEEEEEccCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCcceE---EEeeccCCChH---
Confidence 344445557788889998765322 1 1 11121 22334455644433 44333333333
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccc--cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCC
Q 019100 184 RTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIM--NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 261 (346)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~ 261 (346)
...+.+..+..+.+.+ ..+..++...|.. ..++..+..+...+.+.|+++.+|++|....-..
T Consensus 192 -~~~e~v~~~~~~~~~~-----~~~VvGidL~G~e~~~~p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~--------- 256 (399)
T KOG1097|consen 192 -VAEETVSEAKELNKLF-----PNFVVGIDLVGQEDLGGPLSLFLEVLAKAPAKGIHLTFHAGETNGGASV--------- 256 (399)
T ss_pred -HHHHHHHHHHHHHHhC-----CCeEEEEecCCCCCCCCChhhhHHHHHhhhhcCCcEEEEccccCCChHH---------
Confidence 1233344333333322 1223344444433 3345556667777777999999999988521111
Q ss_pred CHHHHHHHcCCCCCCeeEEEeccCChhh--HHHHHhcCCeEEEChhhhccc---cc--cccHHHHHHcCCcEEEcCCCCC
Q 019100 262 GTVTFLDKIEFLQNNLLSAHTVWVNHTE--IGLLSRAGVKVSHCPASAMRM---LG--FAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 262 ~~~~~l~~~g~l~~~~~~~H~~~~~~~~--i~~l~~~g~~v~~~p~~~~~l---~~--~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
..+.++ +++.. .+.||..+..++ +.++++.++.+.+||.||..+ .+ .-|+++++++|++++|.||.+.
T Consensus 257 -v~~~LD---~l~~~-RIGHG~~l~~dp~L~~~~k~~nI~lEiCP~SN~vl~~v~d~rnhp~~~~~~~~vP~vI~sDDP~ 331 (399)
T KOG1097|consen 257 -VKNALD---LLGTE-RIGHGYFLTKDPELINLLKSRNIALEICPISNQVLGLVSDLRNHPVARLLAAGVPVVINSDDPG 331 (399)
T ss_pred -HHHHHH---hhCCc-cccCceeccCCHHHHHHHHhcCceEEEccchhhheeccccccccHHHHHHhCCCCEEEeCCCcc
Confidence 122344 55544 569999998777 999999999999999999765 22 3589999999999999999998
Q ss_pred CCCCC
Q 019100 335 SNNRM 339 (346)
Q Consensus 335 ~~~~~ 339 (346)
..++.
T Consensus 332 ~f~~~ 336 (399)
T KOG1097|consen 332 FFGAA 336 (399)
T ss_pred cccCc
Confidence 66654
No 122
>PRK09875 putative hydrolase; Provisional
Probab=98.72 E-value=3.4e-06 Score=74.06 Aligned_cols=197 Identities=13% Similarity=0.074 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCceEeeecCc----CCHHHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcC
Q 019100 127 TLLCGIELIHSGVTCFAEAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHH 202 (346)
Q Consensus 127 ~~~~~~~~l~~GvTt~~d~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (346)
....+.++-+.|..|++|..+ .++..+.+..+..|++.+.+-.++... ..|........++..+...+.+.....
T Consensus 36 ~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~-~~p~~~~~~~~e~la~~~i~ei~~Gi~ 114 (292)
T PRK09875 36 ICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDA-FFPEHVATRSVQELAQEMVDEIEQGID 114 (292)
T ss_pred HHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCCc-cCCHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 333445667789999999753 567788889999999998775555322 233333333333333333333333322
Q ss_pred C---CCCCe-EEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCee
Q 019100 203 A---ADGRI-RIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLL 278 (346)
Q Consensus 203 ~---~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~ 278 (346)
. -.|.+ +++...........+.++++++.+++.|.+|.+|........+ .++.+++.|+.-.+++
T Consensus 115 gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e-----------~l~il~e~Gvd~~rvv 183 (292)
T PRK09875 115 GTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLE-----------QLALLQAHGVDLSRVT 183 (292)
T ss_pred cCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccchHH-----------HHHHHHHcCcCcceEE
Confidence 1 11223 2222221122223456888888888999999999654332222 5667888888767889
Q ss_pred EEEeccC-ChhhHHHHHhcCCeEEEChhhhcc-c---cccccHHHHHHcC-C-cEEEcCCCCCC
Q 019100 279 SAHTVWV-NHTEIGLLSRAGVKVSHCPASAMR-M---LGFAPIKEMLHAD-I-CVSLGTDGAPS 335 (346)
Q Consensus 279 ~~H~~~~-~~~~i~~l~~~g~~v~~~p~~~~~-l---~~~~~~~~~~~~G-v-~v~~GTD~~~~ 335 (346)
+.|.... +.+.+..++++|+++.++-..... . .-...+..+.+.| . +|.+++|....
T Consensus 184 i~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~ 247 (292)
T PRK09875 184 VGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRR 247 (292)
T ss_pred EeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCc
Confidence 9998643 456688999999999986422111 1 1134678888888 3 79999997643
No 123
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=98.66 E-value=1.5e-07 Score=83.44 Aligned_cols=26 Identities=42% Similarity=0.623 Sum_probs=21.0
Q ss_pred cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 311 LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 311 ~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
....++++++++|+++++|||+.+++
T Consensus 224 ~~~~~~~~l~~~Gv~~~l~sD~~~~~ 249 (304)
T PF13147_consen 224 EDRAALRELLEAGVPVALGSDHAPSS 249 (304)
T ss_dssp HHHHHHHHHHHTTSSEEEEE-BBTTT
T ss_pred hhhHHHHHHHhCCCeEEEEcCCcccc
Confidence 34567899999999999999998753
No 124
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=98.57 E-value=5.2e-06 Score=75.22 Aligned_cols=110 Identities=8% Similarity=0.060 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHH--HHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhc--
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQ--VVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA-- 296 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~--~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~-- 296 (346)
+.+.+.++++.++++|.++.+|+........ .....+- ....++.++. .+.++++.|.. +.+.++.+++.
T Consensus 111 d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~--~~~~~lA~~~--p~~~v~i~Hvs--t~~~~~~i~~ak~ 184 (335)
T cd01294 111 DLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFI--PVLEPLAQRF--PKLKIVLEHIT--TADAVEYVKSCNE 184 (335)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHH--HHHHHHHHHc--CCCeEEEeccc--HHHHHHHHHhCCC
Confidence 3577889999999999999999854322000 0000000 0022233322 23377777875 44556666544
Q ss_pred CCeEEEChhh----hccc-c---c--------------cccHHHHHHcCCcE-EEcCCCCCCC
Q 019100 297 GVKVSHCPAS----AMRM-L---G--------------FAPIKEMLHADICV-SLGTDGAPSN 336 (346)
Q Consensus 297 g~~v~~~p~~----~~~l-~---~--------------~~~~~~~~~~Gv~v-~~GTD~~~~~ 336 (346)
.++..+||.- ...+ . + ...+-+.++.|..- .++||+.|..
T Consensus 185 ~vt~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~ 247 (335)
T cd01294 185 NVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHP 247 (335)
T ss_pred CcEEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCC
Confidence 5888889841 1000 0 1 12345667789888 6999999854
No 125
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.56 E-value=1.4e-06 Score=75.67 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEE
Q 019100 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (346)
Q Consensus 223 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~ 302 (346)
+.+++.+++|+++|++|.+|+.....+ ..+.+++.+. ....+.|+...+.+.+..+.+.|+.+.+
T Consensus 108 ~~~~~~~~~a~~~~~pv~iH~~~~~~~-------------~~~~l~~~~~--~~~~i~H~~~~~~~~~~~~~~~g~~~~~ 172 (252)
T TIGR00010 108 EVFRAQLQLAEELNLPVIIHARDAEED-------------VLDILREEKP--KVGGVLHCFTGDAELAKKLLDLGFYISI 172 (252)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCccHH-------------HHHHHHhcCC--CCCEEEEccCCCHHHHHHHHHCCCeEee
Confidence 678888999999999999999754322 3455556652 2345679987677788888889999998
Q ss_pred ChhhhccccccccHHHHHHcC--CcEEEcCCCCC
Q 019100 303 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAP 334 (346)
Q Consensus 303 ~p~~~~~l~~~~~~~~~~~~G--v~v~~GTD~~~ 334 (346)
+..... .....++++++.. =++.++||.+.
T Consensus 173 ~~~~~~--~~~~~~~~~i~~~~~dril~~TD~p~ 204 (252)
T TIGR00010 173 SGIVTF--KNAKSLREVVRKIPLERLLVETDSPY 204 (252)
T ss_pred ceeEec--CCcHHHHHHHHhCCHHHeEecccCCC
Confidence 874321 2234566776665 38999999863
No 126
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.53 E-value=2.9e-06 Score=73.55 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEE
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~ 301 (346)
.+.++..+++|++++++|.+|+...... ..+.+++.+. ...++.|+..-+.+.+..+.+.|+.+.
T Consensus 107 ~~~~~~~~~~a~e~~~pv~iH~~~~~~~-------------~~~l~~~~~~--~~~~i~H~~~~~~~~~~~~~~~g~~~~ 171 (251)
T cd01310 107 KEVFRAQLELAKELNLPVVIHSRDAHED-------------VLEILKEYGP--PKRGVFHCFSGSAEEAKELLDLGFYIS 171 (251)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCchHH-------------HHHHHHhcCC--CCCEEEEccCCCHHHHHHHHHcCCEEE
Confidence 4678899999999999999998754321 4455666661 245667988766677888888999999
Q ss_pred EChhhhccccccccHHHHHHcC--CcEEEcCCCCC
Q 019100 302 HCPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAP 334 (346)
Q Consensus 302 ~~p~~~~~l~~~~~~~~~~~~G--v~v~~GTD~~~ 334 (346)
+++.... .....++++.+.+ -++.++||.+-
T Consensus 172 ~~~~~~~--~~~~~~~~~~~~~~~dril~~TD~p~ 204 (251)
T cd01310 172 ISGIVTF--KNANELREVVKEIPLERLLLETDSPY 204 (251)
T ss_pred eeeeecc--CCCHHHHHHHHhCChHHEEEcccCCC
Confidence 8875421 1122356666655 37999999864
No 127
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=98.48 E-value=9.8e-06 Score=70.29 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEE
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~ 301 (346)
.+.+++.+++|++++++|.+|+.....+ ..+.+++.+.. ...+.|++.-+.++...+.+.|..++
T Consensus 113 ~~vf~~ql~lA~~~~~Pv~iH~r~a~~~-------------~~~il~~~~~~--~~~i~H~fsG~~~~a~~~l~~G~~iS 177 (258)
T PRK11449 113 QWLLDEQLKLAKRYDLPVILHSRRTHDK-------------LAMHLKRHDLP--RTGVVHGFSGSLQQAERFVQLGYKIG 177 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCccHH-------------HHHHHHhcCCC--CCeEEEcCCCCHHHHHHHHHCCCEEE
Confidence 3567789999999999999999764332 44555555532 23468999999999999999999998
Q ss_pred EChhhhccccccccHHHHHHc-CC-cEEEcCCCCC
Q 019100 302 HCPASAMRMLGFAPIKEMLHA-DI-CVSLGTDGAP 334 (346)
Q Consensus 302 ~~p~~~~~l~~~~~~~~~~~~-Gv-~v~~GTD~~~ 334 (346)
+.+.... .....++++++. .. ++.+.||+|-
T Consensus 178 ~~g~it~--~~~~~~~~~~~~ipldriL~ETD~P~ 210 (258)
T PRK11449 178 VGGTITY--PRASKTRDVIAKLPLASLLLETDAPD 210 (258)
T ss_pred eCccccc--cCcHHHHHHHHhCChhhEEEecCCCC
Confidence 8875432 122334554442 22 5999999984
No 128
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=98.38 E-value=1.2e-05 Score=71.06 Aligned_cols=197 Identities=12% Similarity=0.046 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhcCceEeeecCc----CCHHHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHH
Q 019100 125 ISTLLCGIELIHSGVTCFAEAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200 (346)
Q Consensus 125 ~~~~~~~~~~l~~GvTt~~d~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (346)
......++++-..|..|++|+.+ ..+..+.+..+..|++.+.+-.++-.. ..|........++.-+...+.++.-
T Consensus 38 ~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~-~~p~~~~~~s~e~la~~~i~Ei~~G 116 (308)
T PF02126_consen 38 EAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEP-FYPEWVREASVEELADLFIREIEEG 116 (308)
T ss_dssp HHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGG-CSCHHHHTSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCccc-cCChhhhcCCHHHHHHHHHHHHHhc
Confidence 34444556777899999999863 567788899999999998876554322 2232222222222212222222221
Q ss_pred cCC---CCCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCCh-hhHHHHHHhcCCCCCHHHHHHHcCCCCCC
Q 019100 201 HHA---ADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP-YENQVVMDTRKVDHGTVTFLDKIEFLQNN 276 (346)
Q Consensus 201 ~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~g~~~~~~~~l~~~g~l~~~ 276 (346)
... -.|.++...............+++++..+++.|++|++|..... ...+ .++.+.+.|..-.+
T Consensus 117 idgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e-----------~~~il~e~Gv~~~r 185 (308)
T PF02126_consen 117 IDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLE-----------QLDILEEEGVDPSR 185 (308)
T ss_dssp STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHH-----------HHHHHHHTT--GGG
T ss_pred CCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHH-----------HHHHHHHcCCChhH
Confidence 111 11334432222222223345778888888899999999997655 3222 56778889987778
Q ss_pred eeEEEeccCCh-hhHHHHHhcCCeEEEChhh------hc--c--c----cccccHHHHHHcCC--cEEEcCCCC
Q 019100 277 LLSAHTVWVNH-TEIGLLSRAGVKVSHCPAS------AM--R--M----LGFAPIKEMLHADI--CVSLGTDGA 333 (346)
Q Consensus 277 ~~~~H~~~~~~-~~i~~l~~~g~~v~~~p~~------~~--~--l----~~~~~~~~~~~~Gv--~v~~GTD~~ 333 (346)
+++.|.-...+ +.+..++++|+.+.+--.. .. . . .....+..|+++|- +|.+++|..
T Consensus 186 vvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~ 259 (308)
T PF02126_consen 186 VVIGHMDRNPDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIG 259 (308)
T ss_dssp EEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHE
T ss_pred eEEeCCCCCCCHHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEecccc
Confidence 99999874444 3467889999999884431 10 0 0 01246788999998 699999965
No 129
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=98.34 E-value=1.1e-05 Score=73.01 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=31.1
Q ss_pred CEEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc
Q 019100 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (346)
Q Consensus 76 ~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~ 147 (346)
.+|+|||||.|+|+..-. ....+++...+ +.++..|||++.+|.+
T Consensus 2 ~~vlPG~ID~HvH~r~pg-----------------------~~~~ed~~sgs----~AAa~GGvTtv~dmPn 46 (344)
T cd01316 2 TIRLPGLIDVHVHLREPG-----------------------ATHKEDFASGT----KAALAGGFTMVRAMPN 46 (344)
T ss_pred eEEeCCeEEeeeccCCCC-----------------------cCCcChHHHHH----HHHHhCCCeEEEECCC
Confidence 479999999999996610 01123333333 4578999999999964
No 130
>PRK10812 putative DNAse; Provisional
Probab=98.33 E-value=1.2e-05 Score=69.93 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEE
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 301 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~ 301 (346)
.+.+++.+++|+++++++.+|+.....+ ..+.+++.+....+ .+.|++.-+.+....+.+.|..+.
T Consensus 110 ~~vf~~ql~lA~e~~~Pv~iH~r~a~~~-------------~l~iL~~~~~~~~~-~v~H~fsG~~~~a~~~~~~G~~is 175 (265)
T PRK10812 110 QESFRHHIQIGRELNKPVIVHTRDARAD-------------TLAILREEKVTDCG-GVLHCFTEDRETAGKLLDLGFYIS 175 (265)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCchHH-------------HHHHHHhhcCCCCC-EEEEeecCCHHHHHHHHHCCCEEE
Confidence 3467788999999999999998754332 44556655443223 347999888888999999999998
Q ss_pred EChhhhccccccccHHHHHHcC--CcEEEcCCCCC
Q 019100 302 HCPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAP 334 (346)
Q Consensus 302 ~~p~~~~~l~~~~~~~~~~~~G--v~v~~GTD~~~ 334 (346)
+...... .....++++.+.+ -++.+.||+|-
T Consensus 176 ~~g~~t~--~~~~~~~~~~~~ipldrlLlETD~P~ 208 (265)
T PRK10812 176 FSGIVTF--RNAEQLRDAARYVPLDRLLVETDSPY 208 (265)
T ss_pred ECeeeec--CccHHHHHHHHhCChhhEEEecCCCC
Confidence 8754321 2334577777776 37999999973
No 131
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=98.19 E-value=0.00017 Score=61.90 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEE
Q 019100 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (346)
Q Consensus 223 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~ 302 (346)
+.+++-+++|+++++++.+|+.+...+ ..+.|++.+. +...+.||+.-+.++...+.+.|..+++
T Consensus 112 ~~F~~ql~lA~~~~lPviIH~R~A~~d-------------~~~iL~~~~~--~~~gi~HcFsGs~e~a~~~~d~G~yisi 176 (256)
T COG0084 112 EVFEAQLELAKELNLPVIIHTRDAHED-------------TLEILKEEGA--PVGGVLHCFSGSAEEARKLLDLGFYISI 176 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccHHH-------------HHHHHHhcCC--CCCEEEEccCCCHHHHHHHHHcCeEEEE
Confidence 467788999999999999999875443 4555666655 3445579999999999999999999998
Q ss_pred ChhhhccccccccHHHHHHc-CC-cEEEcCCCCC
Q 019100 303 CPASAMRMLGFAPIKEMLHA-DI-CVSLGTDGAP 334 (346)
Q Consensus 303 ~p~~~~~l~~~~~~~~~~~~-Gv-~v~~GTD~~~ 334 (346)
.+..... ....++++.+. -. ++.+=||+|-
T Consensus 177 sG~itfk--~a~~~~ev~~~iPldrLL~ETDsPy 208 (256)
T COG0084 177 SGIVTFK--NAEKLREVARELPLDRLLLETDAPY 208 (256)
T ss_pred CceeecC--CcHHHHHHHHhCCHhHeEeccCCCC
Confidence 8866432 11223332221 11 4788999884
No 132
>PRK10425 DNase TatD; Provisional
Probab=98.15 E-value=7.7e-05 Score=64.64 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEE
Q 019100 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (346)
Q Consensus 223 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~ 302 (346)
+.+++.+++|+++++++.+|+.+...+ ..+.+++.....++ .+.|++.-+.+.+..+.+.|..+++
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a~~~-------------~l~iL~~~~~~~~~-~i~H~fsG~~~~~~~~l~~G~~~si 173 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDAHER-------------FMALLEPWLDKLPG-AVLHCFTGTREEMQACLARGLYIGI 173 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCchHH-------------HHHHHHHhccCCCC-eEEEecCCCHHHHHHHHHCCCEEEE
Confidence 567788999999999999999754422 34455543211123 4479999999999999999999998
Q ss_pred ChhhhccccccccHHHHHH-cCC-cEEEcCCCCC
Q 019100 303 CPASAMRMLGFAPIKEMLH-ADI-CVSLGTDGAP 334 (346)
Q Consensus 303 ~p~~~~~l~~~~~~~~~~~-~Gv-~v~~GTD~~~ 334 (346)
.+..... .....++++.+ -.. ++.+-||+|-
T Consensus 174 ~g~i~~~-~~~~~~~~~~~~ipldrlLlETDaP~ 206 (258)
T PRK10425 174 TGWVCDE-RRGLELRELLPLIPAERLLLETDAPY 206 (258)
T ss_pred Cceeecc-cccHHHHHHHHhCChHHEEEeccCCC
Confidence 8743210 11123344432 222 5899999973
No 133
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=98.04 E-value=0.00058 Score=58.88 Aligned_cols=193 Identities=14% Similarity=0.091 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhcCceEeeecC----cCCHHHHHHHHHHhCCeEEEecccccCCCCCCccccc-CChHHHHHHHHHHHH
Q 019100 124 YISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAV-RTTDDCIQSQKELYA 198 (346)
Q Consensus 124 ~~~~~~~~~~~l~~GvTt~~d~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~ 198 (346)
......-..+.+..|.-|++|+. +.+...+.+.+++.|++.+.+-.++-... ++ .|.. ...++.-......++
T Consensus 47 ~a~~~~e~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~-~p-~~~~~~~i~~~ae~~v~ei~ 124 (316)
T COG1735 47 VALAIAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAF-HP-EYFALRPIEELAEFVVKEIE 124 (316)
T ss_pred HHHHHHHHHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEecccccccc-ch-hHHhhCCHHHHHHHHHHHHH
Confidence 33344455678889999999985 35677888999999999877655443321 22 2222 121222112222222
Q ss_pred HHcCCCCCCeEEE-Eee-cccccCC---HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCC
Q 019100 199 KHHHAADGRIRIW-FGI-RQIMNAT---DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFL 273 (346)
Q Consensus 199 ~~~~~~~~~~~~~-~~~-~~~~~~~---~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l 273 (346)
. +...-.++.+ +.. .+.+..+ ++.|+.+++..++-|.|+++|........+ ..+++.+.|+.
T Consensus 125 ~--Gi~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~e-----------q~~il~~egvd 191 (316)
T COG1735 125 E--GIAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLE-----------QLRILAEEGVD 191 (316)
T ss_pred h--cccCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHH-----------HHHHHHHcCCC
Confidence 1 1111112221 111 1222334 456777777777889999999866553333 56778888876
Q ss_pred CCCeeEEEec-cCChhh-HHHHHhcCCeEEEChhh-hccc--c-ccccHHHHHHcCC--cEEEcCC
Q 019100 274 QNNLLSAHTV-WVNHTE-IGLLSRAGVKVSHCPAS-AMRM--L-GFAPIKEMLHADI--CVSLGTD 331 (346)
Q Consensus 274 ~~~~~~~H~~-~~~~~~-i~~l~~~g~~v~~~p~~-~~~l--~-~~~~~~~~~~~Gv--~v~~GTD 331 (346)
-.++.+.|+. ..++.. ...|+.+|+.+.+--.. +.+. + ...++.++.+.|. ++.+|-|
T Consensus 192 l~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~ls~d 257 (316)
T COG1735 192 LRKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSHD 257 (316)
T ss_pred hhHeeEeccCCCCChHHHHHHHHhcCceEEecccCccccCcHHHhhhhHHHHHHhhHhhheecccc
Confidence 6678889988 444433 56778889988765432 1111 1 2568888888888 5777733
No 134
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=97.92 E-value=1.5e-05 Score=74.39 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=66.1
Q ss_pred CeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhh--HHHHHhcCCeEEEChhhhccc-cc-
Q 019100 237 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE--IGLLSRAGVKVSHCPASAMRM-LG- 312 (346)
Q Consensus 237 ~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~--i~~l~~~g~~v~~~p~~~~~l-~~- 312 (346)
+.+..||+|... .+ ...+.. ++++ .|.||..+.++. ..+++..++.+.+||.||..+ .+
T Consensus 327 f~~r~HaGE~g~-~~-------------~l~~al--L~ad-RIGHGv~l~~dp~L~~l~~~~qI~levCPlSN~~l~~~~ 389 (496)
T cd01319 327 FVLRPHCGEAGD-ID-------------HLASAF--LLAH-GISHGINLRKVPVLQYLYYLTQIGIAMSPLSNNSLFLSY 389 (496)
T ss_pred cceeeecCCCCC-hH-------------HHHHHh--hcCc-ccccccccCCCHHHHHHHHHcCCeEEEecCccHhhhcCc
Confidence 579999998653 12 122222 4444 458999986433 455678899999999999765 32
Q ss_pred -cccHHHHHHcCCcEEEcCCCCCCCCC--CCCCCCC
Q 019100 313 -FAPIKEMLHADICVSLGTDGAPSNNR--MSIGPFY 345 (346)
Q Consensus 313 -~~~~~~~~~~Gv~v~~GTD~~~~~~~--~~~~~~~ 345 (346)
.-|++.+++.|++|+|.||.+...++ -.|.+||
T Consensus 390 ~~HP~~~~l~~Gl~VsInTDDPl~f~~t~~~L~eEY 425 (496)
T cd01319 390 EKNPFPEFFKRGLNVSLSTDDPLQFHFTKEPLMEEY 425 (496)
T ss_pred ccChHHHHHHCCCeEEEeCCCchhhCCCCCcHHHHH
Confidence 46999999999999999999975543 2577776
No 135
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.89 E-value=9.6e-05 Score=64.22 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=96.3
Q ss_pred HHHHhcCceEeeecCcCC--HHHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeE
Q 019100 132 IELIHSGVTCFAEAGGQH--VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIR 209 (346)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (346)
.++.++|++.+...+... .....+.....+.+...+ . |+.|.+......+.+....++ ..... ..+
T Consensus 21 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~-----~--GiHP~~~~~~~~~~~~~l~~l-~~~~~---~~~- 88 (255)
T PF01026_consen 21 ERAREAGVSAIIIVSTDPEDWERVLELASQYPDRVYPA-----L--GIHPWEAHEVNEEDLEELEEL-INLNR---PKV- 88 (255)
T ss_dssp HHHHHTTEEEEEEEESSHHHHHHHHHHHHHTTTEEEEE-----E-----GGGGGGHSHHHHHHHHHH-HHHTS---TTE-
T ss_pred HHHHHcCCCEEEEcCCCHHHhHHHHHHHhcCCCeEEEE-----e--cCCcchhhhhhHHHHHHHHHH-HHhcc---ccc-
Confidence 567788999987665321 233344444555444332 1 234433322223333333333 11211 122
Q ss_pred EEEeeccccc---------CCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEE
Q 019100 210 IWFGIRQIMN---------ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSA 280 (346)
Q Consensus 210 ~~~~~~~~~~---------~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~ 280 (346)
.++|..|.+. .-.+.+++.+++|+++++++.+|+.....+ ..+.+++.+..+. ..+-
T Consensus 89 ~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~-------------~l~il~~~~~~~~-~~i~ 154 (255)
T PF01026_consen 89 VAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAHEE-------------LLEILKEYGPPNL-RVIF 154 (255)
T ss_dssp EEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHHH-------------HHHHHHHTTGGTS-EEEE
T ss_pred eeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHHH-------------HHHHHHhccccce-eEEE
Confidence 1223222222 123567889999999999999999763321 5667777774333 5668
Q ss_pred EeccCChhhHHHHHhcCCeEEEChhhhccccccccHHHHHHcCC--cEEEcCCCC
Q 019100 281 HTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADI--CVSLGTDGA 333 (346)
Q Consensus 281 H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~Gv--~v~~GTD~~ 333 (346)
|++.-+.+++..+.+.|..+++.+..... .....+++++.=- ++.+-||.|
T Consensus 155 H~f~g~~~~~~~~~~~g~~~S~~~~~~~~--~~~~~~~~~~~ip~drillETD~P 207 (255)
T PF01026_consen 155 HCFSGSPEEAKKFLDLGCYFSFSGAITFK--NSKKVRELIKAIPLDRILLETDAP 207 (255)
T ss_dssp TT--S-HHHHHHHHHTTEEEEEEGGGGST--TSHHHHHHHHHS-GGGEEEE-BTT
T ss_pred ecCCCCHHHHHHHHhcCceEEeccccccc--ccHHHHHHHhcCChhhEEEcCCCC
Confidence 99999999999999999999999865432 1223445443322 699999986
No 136
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=97.86 E-value=3.6e-05 Score=73.22 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=66.3
Q ss_pred HcCCe---EEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh--hhHHHHHhcCCeEEEChhhhc
Q 019100 234 EFKTG---IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--TEIGLLSRAGVKVSHCPASAM 308 (346)
Q Consensus 234 ~~g~~---v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~--~~i~~l~~~g~~v~~~p~~~~ 308 (346)
+.|+. +..||+|... .+. ..+.. ++.+ .|.||..+.+ ....++++.++.+.+||.||.
T Consensus 433 ~rGLnt~~LrpHaGEag~-~e~-------------l~~A~--L~ad-RIgHGi~l~~dp~L~yl~~~~qI~LevCPtSN~ 495 (611)
T TIGR01429 433 ERGLNTFLLRPHCGEAGS-VDH-------------LVSAF--LTSH-GINHGILLRKVPVLQYLYYLTQIPIAMSPLSNN 495 (611)
T ss_pred HcCCCccceeecCCCCCC-HHH-------------HHHHh--hcCc-ccccceecCCCHHHHHHHHHcCCeEEEcCCcch
Confidence 45555 8999997653 121 11222 3444 4589998854 335566899999999999997
Q ss_pred cc-c--ccccHHHHHHcCCcEEEcCCCCCCCCC--CCCCCCC
Q 019100 309 RM-L--GFAPIKEMLHADICVSLGTDGAPSNNR--MSIGPFY 345 (346)
Q Consensus 309 ~l-~--~~~~~~~~~~~Gv~v~~GTD~~~~~~~--~~~~~~~ 345 (346)
.+ . ..-|++++++.|++|+|+||.+...+. -.|.+||
T Consensus 496 ~l~~~y~~HP~~~~~~~Gl~VSLsTDDPl~f~~T~epL~EEY 537 (611)
T TIGR01429 496 SLFLEYSKNPLPEYLHKGLNVSLSTDDPLQFHYTKEALMEEY 537 (611)
T ss_pred hhccChhhChHHHHHHCCCeEEEcCCCchhhCCCCCcHHHHH
Confidence 54 2 245899999999999999999975543 2466665
No 137
>PLN03055 AMP deaminase; Provisional
Probab=97.80 E-value=2.7e-05 Score=73.85 Aligned_cols=92 Identities=21% Similarity=0.139 Sum_probs=66.7
Q ss_pred CeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC--hhhHHHHHhcCCeEEEChhhhccc-c--
Q 019100 237 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM-L-- 311 (346)
Q Consensus 237 ~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~--~~~i~~l~~~g~~v~~~p~~~~~l-~-- 311 (346)
+.+..|++|... .+ .+... +++.+ .|.||..+. +..+.++++.++.+.+||.||..+ .
T Consensus 417 ~~~rpHAGEag~-~~--------------~v~~a-lL~a~-RIgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~~l~~~y 479 (602)
T PLN03055 417 IKFRPHAGEAGD-ID--------------HLAAA-FLLAH-NIAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNSLFLDY 479 (602)
T ss_pred CCccccCCCCCC-HH--------------HHHHH-hhCCc-eecCccccCCCHHHHHHHHHcCCeEEEccCcchhhccch
Confidence 558899987642 12 11111 24544 458999874 455788999999999999999765 2
Q ss_pred ccccHHHHHHcCCcEEEcCCCCCCCCCC--CCCCCC
Q 019100 312 GFAPIKEMLHADICVSLGTDGAPSNNRM--SIGPFY 345 (346)
Q Consensus 312 ~~~~~~~~~~~Gv~v~~GTD~~~~~~~~--~~~~~~ 345 (346)
..-|++.|++.|++|+|+||.+...++. .|.+||
T Consensus 480 ~~HP~~~~~~~Gl~VSInTDDPl~f~tT~epL~eEY 515 (602)
T PLN03055 480 HRNPFPMFFARGLNVSLSTDDPLQIHLTKEPLVEEY 515 (602)
T ss_pred hhChHHHHHHCCCEEEEcCCCcchhcCCCCcHHHHH
Confidence 2459999999999999999999865442 477766
No 138
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.68 E-value=0.0021 Score=52.80 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=71.5
Q ss_pred EeecccccCCH---HHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChh
Q 019100 212 FGIRQIMNATD---RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT 288 (346)
Q Consensus 212 ~~~~~~~~~~~---~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~ 288 (346)
++.-|....++ +.+++-+++|+++++++.+|--... ..+.... .++.+...++.....++.|++ .+
T Consensus 100 iGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~n-K~e~t~~-------ildi~~~~~l~~~lvvIDH~N---~e 168 (254)
T COG1099 100 IGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRN-KKEATSK-------ILDILIESGLKPSLVVIDHVN---EE 168 (254)
T ss_pred eeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCc-chhHHHH-------HHHHHHHcCCChhheehhccc---HH
Confidence 44444455554 4677889999999999999975443 2333322 678888899987778888876 44
Q ss_pred hHHHHHhcC--CeEEEChhhhccccccccHHHHHHcC-CcEEEcCCCCC
Q 019100 289 EIGLLSRAG--VKVSHCPASAMRMLGFAPIKEMLHAD-ICVSLGTDGAP 334 (346)
Q Consensus 289 ~i~~l~~~g--~~v~~~p~~~~~l~~~~~~~~~~~~G-v~v~~GTD~~~ 334 (346)
.++.+-+.+ +.+++|| ..+.....+.=..+.| -++.+.||..+
T Consensus 169 tv~~vld~e~~vGlTvqP---gKlt~~eAveIV~ey~~~r~ilnSD~~s 214 (254)
T COG1099 169 TVDEVLDEEFYVGLTVQP---GKLTVEEAVEIVREYGAERIILNSDAGS 214 (254)
T ss_pred HHHHHHhccceEEEEecC---CcCCHHHHHHHHHHhCcceEEEeccccc
Confidence 466455555 4556778 2222333445556667 57999999663
No 139
>PLN02768 AMP deaminase
Probab=97.62 E-value=5.7e-05 Score=73.26 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=65.1
Q ss_pred CeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh--hhHHHHHhcCCeEEEChhhhccc-c--
Q 019100 237 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--TEIGLLSRAGVKVSHCPASAMRM-L-- 311 (346)
Q Consensus 237 ~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~--~~i~~l~~~g~~v~~~p~~~~~l-~-- 311 (346)
+.+..||+|... .+.+ ...+ ++.. .|.||..+.. ....++...++.+.+||.||..+ .
T Consensus 650 f~fRPHAGEag~-~e~I-------------~~Al--L~Ad-RIgHGv~l~kdP~LqyL~~l~qIgLevCPlSN~~l~~~y 712 (835)
T PLN02768 650 IKFRPHSGEAGD-IDHL-------------AATF--LTCH-NIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDY 712 (835)
T ss_pred cccccccCCCCC-HHHH-------------HHHH--hcCC-ccCCccccCcCHHHHHHHHHcCCeEEECCCcchhhhcch
Confidence 558999987543 2221 1122 3434 4479988753 33557788999999999999765 2
Q ss_pred ccccHHHHHHcCCcEEEcCCCCCCCCCC--CCCCCC
Q 019100 312 GFAPIKEMLHADICVSLGTDGAPSNNRM--SIGPFY 345 (346)
Q Consensus 312 ~~~~~~~~~~~Gv~v~~GTD~~~~~~~~--~~~~~~ 345 (346)
..-|+++|++.|++|+|.||.+...++. .|.+||
T Consensus 713 ~~HPf~~f~~~GL~VSLNTDDPL~fhtT~epL~EEY 748 (835)
T PLN02768 713 HRNPFPMFFLRGLNVSLSTDDPLQIHLTKEPLVEEY 748 (835)
T ss_pred hhChHHHHHHCCCEEEEcCCCccccCCCCCCHHHHH
Confidence 3469999999999999999999865442 477776
No 140
>PTZ00310 AMP deaminase; Provisional
Probab=97.46 E-value=0.00013 Score=75.00 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=66.2
Q ss_pred CeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh--hhHHHHHhcCCeEEEChhhhccc---c
Q 019100 237 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--TEIGLLSRAGVKVSHCPASAMRM---L 311 (346)
Q Consensus 237 ~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~--~~i~~l~~~g~~v~~~p~~~~~l---~ 311 (346)
+.+..||+|... .+.+ .... ++.. .|.||..+.. ..+.+++..++.+.+||.||..+ -
T Consensus 1110 f~~rpHAGEag~-~~hI-------------~~Al--L~a~-RIgHGi~l~~dp~L~yl~~l~qI~LevCPlSN~~l~~sy 1172 (1453)
T PTZ00310 1110 FALRPHCGESGS-MDHL-------------YGAF--LCAN-SICHGINLRNDPPMQYLYYLAQIGLHVSPLSNNALFLAF 1172 (1453)
T ss_pred cCccccCCCCCC-HHHH-------------HHHH--hCCc-cccchhhhCcCHHHHHHHHHcCCeEEECCCchHhhhhch
Confidence 368899987653 2211 1122 3444 4589998853 44667888999999999999654 2
Q ss_pred ccccHHHHHHcCCcEEEcCCCCCCCCCCC---CCCCC
Q 019100 312 GFAPIKEMLHADICVSLGTDGAPSNNRMS---IGPFY 345 (346)
Q Consensus 312 ~~~~~~~~~~~Gv~v~~GTD~~~~~~~~~---~~~~~ 345 (346)
..-|+++|++.|++|+|+||.+..+++ + |.+||
T Consensus 1173 ~~hP~~~f~~~Gl~VSLnTDDPl~f~t-T~EpL~eEY 1208 (1453)
T PTZ00310 1173 LENPFPVFFHRGLNVSLSTDDPLMFHQ-TQEPLIEEY 1208 (1453)
T ss_pred hhCcHHHHHHCCCEEEECCCCccccCC-CcccHHHHH
Confidence 346999999999999999999976644 5 77776
No 141
>PLN02599 dihydroorotase
Probab=97.35 E-value=0.0057 Score=55.74 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHH--HHcCCCCCCeeEEEeccCChhhHHHHHh--c-
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFL--DKIEFLQNNLLSAHTVWVNHTEIGLLSR--A- 296 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l--~~~g~l~~~~~~~H~~~~~~~~i~~l~~--~- 296 (346)
.+.+.++++.+++.|+++.+|+............... ...+.+ ......+.+.+++|.+. .+.++.+++ .
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~---~i~r~l~~~la~~~g~kI~i~HiSt--~~~ve~v~~ak~~ 209 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKV---FIDTILAPLVQKLPQLKIVMEHITT--MDAVEFVESCGDG 209 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHH---HHHHHHHHHHHhccCCeEEEEecCh--HHHHHHHHhccCC
Confidence 5788889999999999999998542221100000000 011122 12233455777777653 333444443 2
Q ss_pred CCeEEEChhh----hccc------------------cccccHHHHHHcCCc-EEEcCCCCCCC
Q 019100 297 GVKVSHCPAS----AMRM------------------LGFAPIKEMLHADIC-VSLGTDGAPSN 336 (346)
Q Consensus 297 g~~v~~~p~~----~~~l------------------~~~~~~~~~~~~Gv~-v~~GTD~~~~~ 336 (346)
.+...+||.- ...+ .....+.+.+..|.. ..+|||+.|..
T Consensus 210 ~vtae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~ 272 (364)
T PLN02599 210 NVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHP 272 (364)
T ss_pred CEEEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCC
Confidence 5778888831 1000 012345678888995 89999999843
No 142
>PRK05451 dihydroorotase; Provisional
Probab=97.31 E-value=0.012 Score=53.44 Aligned_cols=112 Identities=11% Similarity=0.110 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHH-HHHHcCCCCCCeeEEEeccCChhhHHHHHhc--C
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT-FLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA--G 297 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~-~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~--g 297 (346)
+.+.+.++++.++++|+++.+|+..............-.-...+. +.++. .+.+.+++|.. +.+.++.+++. +
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~~lA~~~--pg~~lhI~Hls--t~~~~e~i~~a~~~ 191 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRF--PKLKIVFEHIT--TKDAVDYVREANDN 191 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHHHHHHhc--CCCcEEEEecC--cHHHHHHHHhcCCC
Confidence 567888899999999999999986422101000000000000111 22232 24477778875 44556655543 5
Q ss_pred CeEEEChhh----hccc------------------cccccHHHHHHcCCcE-EEcCCCCCCC
Q 019100 298 VKVSHCPAS----AMRM------------------LGFAPIKEMLHADICV-SLGTDGAPSN 336 (346)
Q Consensus 298 ~~v~~~p~~----~~~l------------------~~~~~~~~~~~~Gv~v-~~GTD~~~~~ 336 (346)
++..+||.- ...+ .....+-+.++.|..- .+|||++|..
T Consensus 192 it~Et~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~ 253 (345)
T PRK05451 192 LAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHA 253 (345)
T ss_pred EEEEecHHHHhcCHHHHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCC
Confidence 777888841 1000 0112456778889888 8999999854
No 143
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=97.16 E-value=0.02 Score=49.93 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC----------hhhH
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN----------HTEI 290 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~----------~~~i 290 (346)
+.+.+...++.+.++|+++.+|+.... ... ..++++++ +.++++.|+.... .+.+
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~~~~--l~~----------l~~l~~~~---~l~ivldH~G~p~~~~~~~~~~~~~~l 172 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFDAVD--LPA----------LLPFLQKL---PVAVVIDHFGRPDVTKGVDGAEFAALL 172 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeCHhh--HHH----------HHHHHHHC---CCCEEEECCCCCCCCCCCCCHhHHHHH
Confidence 667788899999999999999985321 111 34456666 4589999976543 1123
Q ss_pred HHHHhcCCeEEEChhhhcc-----cccc-ccHHHHHHcCC-cEEEcCCCCCCC
Q 019100 291 GLLSRAGVKVSHCPASAMR-----MLGF-APIKEMLHADI-CVSLGTDGAPSN 336 (346)
Q Consensus 291 ~~l~~~g~~v~~~p~~~~~-----l~~~-~~~~~~~~~Gv-~v~~GTD~~~~~ 336 (346)
..++..++.+-++-..... .... .-++.+.+.|. ++..|||.|.+.
T Consensus 173 ~~l~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~g~dRlmfGSD~P~~~ 225 (263)
T cd01311 173 KLIEEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAAAPDRLVWGTDWPHPR 225 (263)
T ss_pred HHHhcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Confidence 3332235555444322110 0111 12344555666 799999999643
No 144
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=97.08 E-value=0.032 Score=50.61 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHH--cCCCCCCeeEEEeccCChhhHHHHHhc--
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDK--IEFLQNNLLSAHTVWVNHTEIGLLSRA-- 296 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~--~g~l~~~~~~~H~~~~~~~~i~~l~~~-- 296 (346)
+.+.+.++++.++++|+++.+|+............ ......+.+.. ....+.+.++.|... .+-++.+++.
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~---e~~a~~~~i~~lA~~~~~~~~~i~H~st--~~~~~~i~~a~~ 187 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDR---EARFIESVLEPLRQRFPALKVVLEHITT--KDAIDYVEDGNN 187 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccc---hhhhhHHHHHHHHHHccCCeEEEEecCc--HHHHHHHHHcCC
Confidence 44778889999999999999998653111110000 00000111111 112234667777653 3334444432
Q ss_pred CCeEEEChhh----hccc-c-----------------ccccHHHHHHcCCcE-EEcCCCCCCC
Q 019100 297 GVKVSHCPAS----AMRM-L-----------------GFAPIKEMLHADICV-SLGTDGAPSN 336 (346)
Q Consensus 297 g~~v~~~p~~----~~~l-~-----------------~~~~~~~~~~~Gv~v-~~GTD~~~~~ 336 (346)
.++..+||.- ...+ . ....+.+.+..|..- .++||+.|..
T Consensus 188 ~vt~E~~ph~L~l~~~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~ 250 (341)
T TIGR00856 188 RLAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHA 250 (341)
T ss_pred CEEEEEcHHHHhccHHHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCC
Confidence 3677788841 1000 1 012345678889888 7999999864
No 145
>PTZ00310 AMP deaminase; Provisional
Probab=96.87 E-value=0.0009 Score=69.10 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=52.5
Q ss_pred eEEEeccCChh-hH-HHHHhcCCeEEEChhhhcccc----ccccHHHHHHcCCcEEEcCCCCCCCCCC--CCCCCC
Q 019100 278 LSAHTVWVNHT-EI-GLLSRAGVKVSHCPASAMRML----GFAPIKEMLHADICVSLGTDGAPSNNRM--SIGPFY 345 (346)
Q Consensus 278 ~~~H~~~~~~~-~i-~~l~~~g~~v~~~p~~~~~l~----~~~~~~~~~~~Gv~v~~GTD~~~~~~~~--~~~~~~ 345 (346)
.|.||..+.+. .+ .++++.++.+.+||.||..+. ..-|+++|+++|++|++.||.+...++. .|.+||
T Consensus 504 RI~HGi~l~d~p~LqyL~~e~qI~LeVCPlSN~~l~v~sy~~HPi~~fl~~GL~VSLNTDDPl~F~tt~EpL~EEY 579 (1453)
T PTZ00310 504 VITRATSIADYPVLQYLCGLHRVGLTVSPLRDHALSITAYFDHPLPKFLHRCLRVSISTSDPLYFHHHSQPLIEEY 579 (1453)
T ss_pred cccchhccCchHHHHHHHHHcCCeEEECCCcccccCCCchhhCcHHHHHHCCCEEEECCCCccccCCCCccHHHHH
Confidence 44799887643 34 445589999999999997652 2359999999999999999999876553 466666
No 146
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=96.22 E-value=0.019 Score=41.90 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=28.5
Q ss_pred cceEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccChh
Q 019100 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSAD 58 (346)
Q Consensus 18 ~~~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~~ 58 (346)
..+++|+|+.|++. ..+ .++||-|+||||+.|+....
T Consensus 65 ~lD~VItNa~IiD~---~GI-~KADIGIkdG~I~gIGkAGN 101 (121)
T PF00449_consen 65 ALDLVITNALIIDY---TGI-VKADIGIKDGRIVGIGKAGN 101 (121)
T ss_dssp C-SEEEEEEEEEET---TEE-EEEEEEEETTEEEEEE-EB-
T ss_pred cccEEEeCcEEEec---CCc-EEeeEEeeCCEEEEEeccCC
Confidence 35799999999964 345 56899999999999998654
No 147
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=93.41 E-value=0.024 Score=42.78 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcC--CCCCCeeEEEeccCChhhHHHHHhcCC
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIE--FLQNNLLSAHTVWVNHTEIGLLSRAGV 298 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g--~l~~~~~~~H~~~~~~~~i~~l~~~g~ 298 (346)
.+..+.+.++. .+++..+..||.++.-...... ...++-+.+| +.| ..--+|+. .++-+.++.|.
T Consensus 64 ~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v-------~~ge~~q~~g~~L~G-~cEs~~~~----rd~lLak~~g~ 130 (142)
T PF12890_consen 64 IQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVV-------HDGELPQFLGVYLKG-NCESVQCA----RDVLLAKATGC 130 (142)
T ss_pred eHHHHHHHHHH-HHcccHHHHhhccccccccccc-------ccchhhHHhCCcCCC-cchHHHHH----HHHHhhhccCC
Confidence 45666677777 7788889999876543222211 1345556666 333 11112221 44556666777
Q ss_pred eEEEChhh
Q 019100 299 KVSHCPAS 306 (346)
Q Consensus 299 ~v~~~p~~ 306 (346)
..-+|..+
T Consensus 131 ~yhVchvs 138 (142)
T PF12890_consen 131 HYHVCHVS 138 (142)
T ss_pred cEEEEEEe
Confidence 77777654
No 148
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=92.36 E-value=5.9 Score=33.90 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=35.0
Q ss_pred hhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCCCC
Q 019100 288 TEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNR 338 (346)
Q Consensus 288 ~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~~~ 338 (346)
+.+..+++.|+.+...-. .... ....-++.+.+.|+.+++|||+.....-
T Consensus 151 ~~~~~~~~~g~aleins~-~~~~~~~~~~~~~~~e~G~~~~i~tDaH~~~~l 201 (237)
T COG1387 151 ELIELAEKNGKALEINSR-PGRLDPNSEILRLARELGVKLAIGTDAHRPGDL 201 (237)
T ss_pred HHHHHHHHhCcEEeecCC-cCccCchHHHHHHHHHhCCeEEeecCcCChhhc
Confidence 447788888988876554 1122 2335678888889999999998864433
No 149
>PRK08609 hypothetical protein; Provisional
Probab=89.78 E-value=21 Score=34.95 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=33.7
Q ss_pred HHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 290 IGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 290 i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
++.+++.|+.+.++..+. +. ....-++.+++.|+++++|||.+...
T Consensus 485 ~~~a~~~G~~lEINa~~~-r~~~~~~~~~~~~e~Gv~i~igSDAH~~~ 531 (570)
T PRK08609 485 IELAKETNTALELNANPN-RLDLSAEHLKKAQEAGVKLAINTDAHHTE 531 (570)
T ss_pred HHHHHHhCCEEEEcCCcc-ccCccHHHHHHHHHcCCEEEEECCCCChh
Confidence 455688999988775432 22 23356789999999999999988644
No 150
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=87.74 E-value=2.7 Score=36.92 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEC
Q 019100 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 303 (346)
Q Consensus 224 ~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~ 303 (346)
.+++-+++|.+..+|+.+|+.....+ ..+.+.+...--++-++.|++.-+.+++..+.+.|..+..+
T Consensus 136 vFekQl~LA~~~~~Pl~iH~r~a~~d-------------~~eIl~~~~~~~~~~vvvHsFtGs~e~~~~~lk~~~yig~~ 202 (296)
T KOG3020|consen 136 VFEKQLDLAKRLKLPLFIHCRSAHED-------------LLEILKRFLPECHKKVVVHSFTGSAEEAQKLLKLGLYIGFT 202 (296)
T ss_pred HHHHHHHHHHHccCCeeeechhhhHH-------------HHHHHHHhccccCCceEEEeccCCHHHHHHHHHccEEeccc
Confidence 57778889999999999999753221 45555555443232366899999999999999999888777
Q ss_pred hhhhccccccccHHHHHHcCC---cEEEcCCCCCCC
Q 019100 304 PASAMRMLGFAPIKEMLHADI---CVSLGTDGAPSN 336 (346)
Q Consensus 304 p~~~~~l~~~~~~~~~~~~Gv---~v~~GTD~~~~~ 336 (346)
+.+...- ....-+. .+ ++.+=||+|-..
T Consensus 203 g~~~k~~---e~~~vlr--~iP~erlllETDsP~~~ 233 (296)
T KOG3020|consen 203 GCSLKTE---ENLEVLR--SIPLERLLLETDSPYCG 233 (296)
T ss_pred ceeeech---hhHHHHh--hCCHhHeeeccCCcccc
Confidence 7664321 1111111 33 377889988543
No 151
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=86.98 E-value=7.3 Score=34.23 Aligned_cols=108 Identities=14% Similarity=0.192 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCC-CCHHH-HHHHcCCCCCCeeEEEeccCChhhHHHHHhcC--
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD-HGTVT-FLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG-- 297 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~-~~~~~-~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g-- 297 (346)
-+-+..+++...+.|+++.+|--.+....+.. ++...+ .+..+ +..++.-| +.+++|++ +.+.++.+++.+
T Consensus 117 ~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDif-drE~~Fi~~vl~pl~~~fP~L--KIV~EHiT--T~dav~~v~~~~~n 191 (344)
T COG0418 117 IEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIF-DREAAFIESVLEPLRQRFPKL--KIVLEHIT--TKDAVEYVKDANNN 191 (344)
T ss_pred HHHHHHHHHHHHHcCCeEEEecccCCccccch-hhHHHHHHHHHHHHHhhCCcc--eEEEEEec--cHHHHHHHHhcCcc
Confidence 34456688888999999999964444333311 110000 00111 22344444 88999987 444566677766
Q ss_pred CeEEEChhh-----hccc-ccc----------------ccHHHHHHcC-CcEEEcCCCCC
Q 019100 298 VKVSHCPAS-----AMRM-LGF----------------APIKEMLHAD-ICVSLGTDGAP 334 (346)
Q Consensus 298 ~~v~~~p~~-----~~~l-~~~----------------~~~~~~~~~G-v~v~~GTD~~~ 334 (346)
+..+++|-- |-.+ +|+ ..++.+.-.| -++-+|||+.|
T Consensus 192 laATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAP 251 (344)
T COG0418 192 LAATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAP 251 (344)
T ss_pred eeeEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCC
Confidence 555666631 2122 332 1234444444 47999999987
No 152
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=86.06 E-value=2.4 Score=36.73 Aligned_cols=114 Identities=15% Similarity=0.094 Sum_probs=55.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccC--Chhh-HHHHH
Q 019100 218 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTE-IGLLS 294 (346)
Q Consensus 218 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~--~~~~-i~~l~ 294 (346)
...++...+.++++|.++|++|.+|+............... ....+++++++-+ ++++.|+... .-++ +.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~--~~~~~~~~~~P~l--~ii~~H~G~~~~~~~~~~~l~~ 187 (273)
T PF04909_consen 112 DPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAPSDPADP--EELEELLERFPDL--RIILAHLGGPFPWWEEALRLLD 187 (273)
T ss_dssp CTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHH--HHHTTHHHHSTTS--EEEESGGGTTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccceeeeccccchhhhhHHHHHH--HHHHHHHHHhcCC--eEEEecCcccchhHHHHHHHHH
Confidence 33344444589999999999999997511100000000000 0023345565544 8898998877 3333 44445
Q ss_pred hc-CCeEEEChhhh-cc---c-cccccHHHHHHc-CC-cEEEcCCCCCC
Q 019100 295 RA-GVKVSHCPASA-MR---M-LGFAPIKEMLHA-DI-CVSLGTDGAPS 335 (346)
Q Consensus 295 ~~-g~~v~~~p~~~-~~---l-~~~~~~~~~~~~-Gv-~v~~GTD~~~~ 335 (346)
+. ++.+-.+-... .. . .....+.++++. |. ++.+|||.+..
T Consensus 188 ~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~g~drilfGSD~P~~ 236 (273)
T PF04909_consen 188 RFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEFGPDRILFGSDYPHP 236 (273)
T ss_dssp HHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHHTGGGEEEE--TTSS
T ss_pred hCCcccccccccccccccCcccccHHHHHHHHHHhCCceEEecCCCCCC
Confidence 54 34432221100 00 0 122345555444 44 79999998853
No 153
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=84.24 E-value=26 Score=30.16 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=76.5
Q ss_pred ccCC-HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh---cCCC---CCHHHHHHHcCCCCCCeeEEEeccCChhhH
Q 019100 218 MNAT-DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT---RKVD---HGTVTFLDKIEFLQNNLLSAHTVWVNHTEI 290 (346)
Q Consensus 218 ~~~~-~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~---~g~~---~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i 290 (346)
.... ++.|+-+.+..+++|+++...+.+.. ..+.+.+. ...+ .+..++|++.+..+..+.+=.+++++++|+
T Consensus 54 qG~G~eeGL~iL~~vk~~~glpvvTeV~~~~-~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~ 132 (258)
T TIGR01362 54 RGPGLEEGLKILQKVKEEFGVPILTDVHESS-QCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDM 132 (258)
T ss_pred CCCCHHHHHHHHHHHHHHhCCceEEEeCCHH-HHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHH
Confidence 3445 78899888888999999999997654 34444332 1111 135678899998888888889999999885
Q ss_pred HHHH----hcC-CeEEEChhhhcc----c-cccccHHHHHHcCCcEEEcCCC
Q 019100 291 GLLS----RAG-VKVSHCPASAMR----M-LGFAPIKEMLHADICVSLGTDG 332 (346)
Q Consensus 291 ~~l~----~~g-~~v~~~p~~~~~----l-~~~~~~~~~~~~Gv~v~~GTD~ 332 (346)
...+ +.| -.++.|-+...+ + .++..+..+++.+.+|.+---+
T Consensus 133 l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~~~PVi~DpSH 184 (258)
T TIGR01362 133 KNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMRELGCPVIFDATH 184 (258)
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCc
Confidence 4433 333 557777754311 1 2445667777778888875433
No 154
>PRK07945 hypothetical protein; Provisional
Probab=83.13 E-value=36 Score=30.87 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=34.6
Q ss_pred hhHHHHHhcCCeEEEChhhhccccccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 288 TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 288 ~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
+-++.+++.|+.+.++...........-++.+.+.|+++++|||.+...
T Consensus 249 ~i~~a~~e~g~~lEINt~~~r~~P~~~il~~a~e~G~~vtigSDAH~p~ 297 (335)
T PRK07945 249 AVFAACREHGTAVEINSRPERRDPPTRLLRLALDAGCLFSIDTDAHAPG 297 (335)
T ss_pred HHHHHHHHhCCEEEEeCCCCCCCChHHHHHHHHHcCCeEEecCCCCChh
Confidence 4468889999998877533211122235688899999999999987544
No 155
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=82.85 E-value=10 Score=33.92 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEec---------cCChhh
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV---------WVNHTE 289 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~---------~~~~~~ 289 (346)
..++.. +++++...++|+-+.+=......-.+ +++.. ..++++.|.. .+++++
T Consensus 151 GLt~~G-~~vv~~mn~lGmiiDvSH~s~~~~~d--------------v~~~s---~~PviaSHsn~ral~~h~RNltD~~ 212 (309)
T cd01301 151 GLTPFG-KELVREMNRLGIIIDLSHLSERTFWD--------------VLDIS---NAPVIASHSNARALCDHPRNLTDAQ 212 (309)
T ss_pred CCCHHH-HHHHHHHHHcCCEEEcCCCCHHHHHH--------------HHHhc---CCCEEEeccChHHhcCCCCCCCHHH
Confidence 345443 34666777888877664333232222 22211 2355666643 388999
Q ss_pred HHHHHhcCCeEEEChhhhccc-cccccHHH-------HHH-cCC-cEEEcCCCC
Q 019100 290 IGLLSRAGVKVSHCPASAMRM-LGFAPIKE-------MLH-ADI-CVSLGTDGA 333 (346)
Q Consensus 290 i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~-------~~~-~Gv-~v~~GTD~~ 333 (346)
++.++++|..+-++.....-- .+...+.. +.+ .|+ .|++|||-.
T Consensus 213 i~~ia~~GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfd 266 (309)
T cd01301 213 LKAIAETGGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFD 266 (309)
T ss_pred HHHHHHcCCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECcccC
Confidence 999999997776655432110 11222222 222 466 599999943
No 156
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=82.44 E-value=32 Score=30.52 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEec--cC-ChhhHHHH-Hhc
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV--WV-NHTEIGLL-SRA 296 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~--~~-~~~~i~~l-~~~ 296 (346)
++.-+..+.+.|.++|+++.+|.+.+......-.. +.......+++++.+-+ +.++.|+. .. ..+.+... +..
T Consensus 142 ~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~-~~~p~~~~~va~~fP~l--~IVl~H~G~~~p~~~~a~~~a~~~~ 218 (293)
T COG2159 142 DDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKG-HSDPLYLDDVARKFPEL--KIVLGHMGEDYPWELEAIELAYAHP 218 (293)
T ss_pred CChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccC-CCCchHHHHHHHHCCCC--cEEEEecCCCCchhHHHHHHHHhCC
Confidence 34447889999999999999998765432110000 00000123456666655 88999986 22 22333322 222
Q ss_pred CCeEEEChhhhccccccccHHHHHHcCC-cEEEcCCCCCCCC
Q 019100 297 GVKVSHCPASAMRMLGFAPIKEMLHADI-CVSLGTDGAPSNN 337 (346)
Q Consensus 297 g~~v~~~p~~~~~l~~~~~~~~~~~~Gv-~v~~GTD~~~~~~ 337 (346)
++.+..+-..-.++.. .-++.+.+.|- +|.+|||.+..+.
T Consensus 219 nvy~d~s~~~~~~~~~-~~~~~~~~~~~dkilFGSD~P~~~~ 259 (293)
T COG2159 219 NVYLDTSGVRPKYFAP-PLLEFLKELGPDKILFGSDYPAIHP 259 (293)
T ss_pred CceeeeeccccccCCh-HHHHHHHhcccCeEEecCCCCCcCH
Confidence 3443322221111101 23455556233 7999999886544
No 157
>PRK07328 histidinol-phosphatase; Provisional
Probab=82.43 E-value=33 Score=29.93 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=33.3
Q ss_pred hhHHHHHhcCCeEEEChhhhccc-c----ccccHHHHHHcCCcEEEcCCCCC
Q 019100 288 TEIGLLSRAGVKVSHCPASAMRM-L----GFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 288 ~~i~~l~~~g~~v~~~p~~~~~l-~----~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
+-++.++++|+.+.++-..-.+. . ...-++.+.+.|+++++|||.+.
T Consensus 181 ~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~itigSDAH~ 232 (269)
T PRK07328 181 EALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVLGSDAHR 232 (269)
T ss_pred HHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEEeCCCCC
Confidence 33678889999998776432111 1 12346888999999999999774
No 158
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=80.42 E-value=29 Score=31.84 Aligned_cols=120 Identities=10% Similarity=0.123 Sum_probs=79.4
Q ss_pred ecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh---cCCC---CCHHHHHHHcCCCCCCeeEEEeccCCh
Q 019100 214 IRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT---RKVD---HGTVTFLDKIEFLQNNLLSAHTVWVNH 287 (346)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~---~g~~---~~~~~~l~~~g~l~~~~~~~H~~~~~~ 287 (346)
|.+......+.++.+.+.+++.|+++..-+.+.. ..+.+.+. +..+ .+-..+++..+-.+..+++.-+.+.+.
T Consensus 160 p~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~-~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~ 238 (360)
T PRK12595 160 PYDFQGLGVEGLKILKQVADEYGLAVISEIVNPA-DVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATI 238 (360)
T ss_pred CccccCCCHHHHHHHHHHHHHcCCCEEEeeCCHH-HHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCH
Confidence 3344566789999999999999999999876544 34444332 1111 123567888888888999888988888
Q ss_pred hhHH----HHHhcCC-eEEEChhhhccc-------cccccHHHHHH-cCCcEEEcCCCCC
Q 019100 288 TEIG----LLSRAGV-KVSHCPASAMRM-------LGFAPIKEMLH-ADICVSLGTDGAP 334 (346)
Q Consensus 288 ~~i~----~l~~~g~-~v~~~p~~~~~l-------~~~~~~~~~~~-~Gv~v~~GTD~~~ 334 (346)
+|+. .+.+.|. .++.|.+..... .++..+..|.+ -+++|.+.+|+..
T Consensus 239 ~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~ 298 (360)
T PRK12595 239 EEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHST 298 (360)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCC
Confidence 7754 5555564 466665321110 23345566665 7899999888764
No 159
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=79.72 E-value=40 Score=29.19 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=77.0
Q ss_pred ccCC-HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh---cCCC---CCHHHHHHHcCCCCCCeeEEEeccCChhhH
Q 019100 218 MNAT-DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT---RKVD---HGTVTFLDKIEFLQNNLLSAHTVWVNHTEI 290 (346)
Q Consensus 218 ~~~~-~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~---~g~~---~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i 290 (346)
.... ++.|+-+.+..+++|+++...+.+.. ..+.+.+. ...+ .+..++|++.+..+..+.+=.+++++++|+
T Consensus 62 qG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~-~~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~ 140 (264)
T PRK05198 62 RGPGLEEGLKILQEVKETFGVPVLTDVHEPE-QAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDM 140 (264)
T ss_pred CCCChHHHHHHHHHHHHHHCCceEEEeCCHH-HHHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHH
Confidence 3446 78899888888899999999987654 34444332 1111 135678899998888888889999999886
Q ss_pred HHHHh----cC-CeEEEChhhhcc----c-cccccHHHHHHcCCcEEEcCCC
Q 019100 291 GLLSR----AG-VKVSHCPASAMR----M-LGFAPIKEMLHADICVSLGTDG 332 (346)
Q Consensus 291 ~~l~~----~g-~~v~~~p~~~~~----l-~~~~~~~~~~~~Gv~v~~GTD~ 332 (346)
...++ .| -.++.|-+...+ + .++..+..+.+.+.+|.+---+
T Consensus 141 ~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~~~lPVi~DpSH 192 (264)
T PRK05198 141 KNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRETGAPVIFDATH 192 (264)
T ss_pred HHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhhCCCCEEEeCCc
Confidence 44333 33 667777754311 1 3455677777888888775433
No 160
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=79.44 E-value=1.7 Score=42.00 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=52.5
Q ss_pred CeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhh----HHHHHhcCCeEEEChhhhccc--
Q 019100 237 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE----IGLLSRAGVKVSHCPASAMRM-- 310 (346)
Q Consensus 237 ~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~----i~~l~~~g~~v~~~p~~~~~l-- 310 (346)
+-+.-||+|... ++.+. ..+|-..| +.|+..+.-.- +-.|++ +.+++.|.||..+
T Consensus 587 f~LRphCgeag~-~~hLv---------safLla~g-------Ishg~Llrk~PvLQYLyYL~Q--IpIamSPLSnnslfl 647 (768)
T KOG1096|consen 587 FTLRPHCGEAGD-IEHLV---------SAFLLAHG-------ISHGILLRKVPVLQYLYYLAQ--IPIAMSPLSNNSLFL 647 (768)
T ss_pred EEecCCCCCcCC-HHHHH---------HHHHHhcc-------ccchhhhccchHHHHHHHHHh--cchhhcccccccccc
Confidence 446779987664 33332 22333344 46777665322 233444 5566789988655
Q ss_pred -cccccHHHHHHcCCcEEEcCCCCCC
Q 019100 311 -LGFAPIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 311 -~~~~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
-...|+.++++.|.+|+++||.+-.
T Consensus 648 ~Y~kNPf~~~f~~GL~VSLSTddpLq 673 (768)
T KOG1096|consen 648 SYHKNPFPEYFKRGLNVSLSTDDPLQ 673 (768)
T ss_pred ccccCchHHHHHhhceeeeccCCchh
Confidence 3567999999999999999999875
No 161
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.92 E-value=38 Score=28.47 Aligned_cols=78 Identities=10% Similarity=0.005 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCC
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 298 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~ 298 (346)
..+.+....+.+...+.|+++.==...++...+ .++.+++.--.+++.++.=|+-++.++++...+.|.
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~-----------~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA 89 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVTYTNPFASE-----------VIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA 89 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCccHHH-----------HHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC
Confidence 346888888999999999886544444443333 222232211111357778888899999999999999
Q ss_pred eEEEChhhh
Q 019100 299 KVSHCPASA 307 (346)
Q Consensus 299 ~v~~~p~~~ 307 (346)
.++++|..+
T Consensus 90 ~FivsP~~~ 98 (213)
T PRK06552 90 QFIVSPSFN 98 (213)
T ss_pred CEEECCCCC
Confidence 999999654
No 162
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=78.59 E-value=24 Score=29.43 Aligned_cols=75 Identities=13% Similarity=0.034 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCC
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 298 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~ 298 (346)
..+++...++.+.+.+.|+++.==...++...+ .++.+++. + ++..+.=|+-++.++.+.+.+.|.
T Consensus 16 ~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~-----------~i~~l~~~-~--~~~~vGAGTVl~~~~a~~a~~aGA 81 (204)
T TIGR01182 16 IDDVDDALPLAKALIEGGLRVLEVTLRTPVALD-----------AIRLLRKE-V--PDALIGAGTVLNPEQLRQAVDAGA 81 (204)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHH-----------HHHHHHHH-C--CCCEEEEEeCCCHHHHHHHHHcCC
Confidence 346888888899999999985544444443333 22222221 1 256778888899999999999999
Q ss_pred eEEEChhhh
Q 019100 299 KVSHCPASA 307 (346)
Q Consensus 299 ~v~~~p~~~ 307 (346)
..+++|..+
T Consensus 82 ~FivsP~~~ 90 (204)
T TIGR01182 82 QFIVSPGLT 90 (204)
T ss_pred CEEECCCCC
Confidence 999999764
No 163
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=78.31 E-value=6.3 Score=35.43 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=26.4
Q ss_pred EeccCChhhHHHHHhcCCeEEEChhhhcccc---ccccHHHHHH--------cCC-cEEEcCCC
Q 019100 281 HTVWVNHTEIGLLSRAGVKVSHCPASAMRML---GFAPIKEMLH--------ADI-CVSLGTDG 332 (346)
Q Consensus 281 H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l~---~~~~~~~~~~--------~Gv-~v~~GTD~ 332 (346)
|--.+++++++.++++|-.+-++.....--. ..+.+..+.+ .|+ .|++|||-
T Consensus 210 h~RNltDe~iraia~~GGviGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDf 273 (320)
T PF01244_consen 210 HPRNLTDEQIRAIAERGGVIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSDF 273 (320)
T ss_dssp -TTSB-HHHHHHHHHTT-EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--B
T ss_pred CCCCCCHHHHHHHHHCCcEEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECccc
Confidence 3345789999999999976665544321101 2233333222 345 69999995
No 164
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.87 E-value=33 Score=28.51 Aligned_cols=75 Identities=7% Similarity=-0.022 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCC
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 298 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~ 298 (346)
..+++...++++.+.+.|+++.=-...++...+. ++.+++. + ++.++.=|+-++.++.+...+.|.
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~-----------I~~l~~~-~--~~~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRTPAALDA-----------IRAVAAE-V--EEAIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHH-----------HHHHHHH-C--CCCEEeeEeCcCHHHHHHHHHcCC
Confidence 3467888889999999998854443334433322 2222211 1 356778888899999999999999
Q ss_pred eEEEChhhh
Q 019100 299 KVSHCPASA 307 (346)
Q Consensus 299 ~v~~~p~~~ 307 (346)
.++++|..+
T Consensus 78 ~FivSP~~~ 86 (201)
T PRK06015 78 RFIVSPGTT 86 (201)
T ss_pred CEEECCCCC
Confidence 999999653
No 165
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.40 E-value=56 Score=27.67 Aligned_cols=79 Identities=8% Similarity=0.023 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCC
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 298 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~ 298 (346)
..+++...++.+.+.+.|+++.=-...++...+... ++.++++--.++.++.=|+-++.++++...+.|.
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~----------~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA 92 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFA----------ELVKYAAKELPGMILGVGSIVDAATAALYIQLGA 92 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHH----------HHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCC
Confidence 346888888999999999985444333333333221 1112222223467778888899999999999999
Q ss_pred eEEEChhhh
Q 019100 299 KVSHCPASA 307 (346)
Q Consensus 299 ~v~~~p~~~ 307 (346)
.++++|..+
T Consensus 93 ~FiVsP~~~ 101 (222)
T PRK07114 93 NFIVTPLFN 101 (222)
T ss_pred CEEECCCCC
Confidence 999999654
No 166
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=72.92 E-value=63 Score=28.05 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCe
Q 019100 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 299 (346)
Q Consensus 220 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~ 299 (346)
.+-+.|..++++|++.++.|..|.-.... +...+ ..+.+++.|+.- .-++-|-.... +....+.|+.
T Consensus 142 ~~n~vl~~a~elA~dvdc~vqLHtes~~~--~~~~~-------i~~~ak~~G~~~-~~VVkHha~p~---v~~~~~~Gi~ 208 (285)
T COG1831 142 ASNEVLEYAMELAKDVDCAVQLHTESLDE--ETYEE-------IAEMAKEAGIKP-YRVVKHHAPPL---VLKCEEVGIF 208 (285)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEecCCCCh--HHHHH-------HHHHHHHhCCCc-ceeEeecCCcc---chhhhhcCcC
Confidence 35567888999999999999999743322 12222 456778888843 44445644332 2223445665
Q ss_pred EEEChhhhccccccccHHHHHHcCCcEEEcCCCC
Q 019100 300 VSHCPASAMRMLGFAPIKEMLHADICVSLGTDGA 333 (346)
Q Consensus 300 v~~~p~~~~~l~~~~~~~~~~~~Gv~v~~GTD~~ 333 (346)
-++ | .+...+++..+.|-+..+-||.-
T Consensus 209 pSV-~------asr~~v~~a~~~g~~FmmETDyI 235 (285)
T COG1831 209 PSV-P------ASRKNVEDAAELGPRFMMETDYI 235 (285)
T ss_pred Ccc-c------ccHHHHHHHHhcCCceEeecccc
Confidence 321 1 23347888899999999998864
No 167
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=70.66 E-value=64 Score=28.25 Aligned_cols=50 Identities=8% Similarity=-0.033 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccC
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV 285 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~ 285 (346)
.+.+++.++..+++|+.+.++..... +.. .+..+.+.. +-++++-|+-..
T Consensus 123 a~~~r~~~~rL~~~gl~fdl~~~~~q--l~~----------~i~l~~~~P--d~~~VldH~G~p 172 (279)
T COG3618 123 APAWRANVERLAKLGLHFDLQVDPHQ--LPD----------LIPLALKAP--DVNFVLDHCGRP 172 (279)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeChhh--hHH----------HHHHHhhCC--CCCEEeccCCCC
Confidence 36788999999999999999985322 111 222233333 237888998776
No 168
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=68.78 E-value=81 Score=27.62 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=76.3
Q ss_pred cCC-HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh---cCCC---CCHHHHHHHcCCCCCCeeEEEeccCChhhHH
Q 019100 219 NAT-DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT---RKVD---HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIG 291 (346)
Q Consensus 219 ~~~-~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~---~g~~---~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~ 291 (346)
... ++.|+-+.+..+++|+++...+.+.. ..+.+.+. ...+ .+..++|++.+-.+..+.+=.++.++++|+.
T Consensus 69 G~G~eeGL~iL~~vk~~~GlpvvTeV~~~~-~~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~ 147 (281)
T PRK12457 69 GVGLDEGLRIFEEVKARFGVPVITDVHEVE-QAAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMK 147 (281)
T ss_pred CCCHHHHHHHHHHHHHHHCCceEEEeCCHH-HHHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHH
Confidence 445 78898888888899999999997654 33333322 1111 1356788899988888888899999998854
Q ss_pred H----HHhcC-CeEEEChhhhcc----c-cccccHHHHHHc--CCcEEEcCCC
Q 019100 292 L----LSRAG-VKVSHCPASAMR----M-LGFAPIKEMLHA--DICVSLGTDG 332 (346)
Q Consensus 292 ~----l~~~g-~~v~~~p~~~~~----l-~~~~~~~~~~~~--Gv~v~~GTD~ 332 (346)
. +.+.| -.++.|-+.... + .++..+..+.+. +.+|.+--=+
T Consensus 148 ~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSH 200 (281)
T PRK12457 148 HVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIFDVTH 200 (281)
T ss_pred HHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEEeCCc
Confidence 3 33333 567777754321 1 345567788886 8998875444
No 169
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=68.44 E-value=42 Score=29.09 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=41.1
Q ss_pred HHHHHHHHHHc-CCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccC-ChhhHHHHHhcCCeEEE
Q 019100 225 LLETRDMAREF-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKVSH 302 (346)
Q Consensus 225 l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~-~~~~i~~l~~~g~~v~~ 302 (346)
+..+++.+++. ++++.+|...... .++ .+ +. |.. ++.|.... .++-++.++++|+.++.
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~v-i~~-------------al-~~---G~~-iINsis~~~~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEV-ARA-------------AL-EA---GAD-IINDVSGGQDPAMLEVAAEYGVPLVL 123 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHH-HHH-------------HH-Hc---CCC-EEEECCCCCCchhHHHHHHcCCcEEE
Confidence 66667777776 9999999864432 221 22 22 333 56887776 45568888999998888
Q ss_pred Chh
Q 019100 303 CPA 305 (346)
Q Consensus 303 ~p~ 305 (346)
++.
T Consensus 124 m~~ 126 (257)
T TIGR01496 124 MHM 126 (257)
T ss_pred EeC
Confidence 764
No 170
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=68.17 E-value=81 Score=27.42 Aligned_cols=118 Identities=12% Similarity=0.134 Sum_probs=75.0
Q ss_pred ccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcC---CC---CCHHHHHHHcCCCCCCeeEEEeccCChhh
Q 019100 216 QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK---VD---HGTVTFLDKIEFLQNNLLSAHTVWVNHTE 289 (346)
Q Consensus 216 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g---~~---~~~~~~l~~~g~l~~~~~~~H~~~~~~~~ 289 (346)
+......+.++.+.+.++++|+++..-+.+.. ..+.+.+... .+ .+-..+++..+-.+.++++.-++..+.+|
T Consensus 69 s~~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~-~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e 147 (260)
T TIGR01361 69 SFQGLGEEGLKLLRRAADEHGLPVVTEVMDPR-DVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEE 147 (260)
T ss_pred cccccHHHHHHHHHHHHHHhCCCEEEeeCChh-hHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHH
Confidence 33444688899999999999999988876543 3444432211 11 12346778888888888988898888777
Q ss_pred H----HHHHhcCC-eEEEChh-h-hc-c---c-cccccHHHHHHc-CCcEEEcCCCCC
Q 019100 290 I----GLLSRAGV-KVSHCPA-S-AM-R---M-LGFAPIKEMLHA-DICVSLGTDGAP 334 (346)
Q Consensus 290 i----~~l~~~g~-~v~~~p~-~-~~-~---l-~~~~~~~~~~~~-Gv~v~~GTD~~~ 334 (346)
+ +.+++.|. .++.|.. + .. . . .++..+..|.+. +++|.+-+|+..
T Consensus 148 ~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~ 205 (260)
T TIGR01361 148 WLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAA 205 (260)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCC
Confidence 4 45555554 3555543 1 11 1 1 234456666664 899999888754
No 171
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.01 E-value=56 Score=25.47 Aligned_cols=72 Identities=15% Similarity=0.003 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhh
Q 019100 227 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 306 (346)
Q Consensus 227 ~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~ 306 (346)
++++.|.+.+..+..-+.-+..-.+.+.. .++.+++.|.-. ..+.=+-.+.++|+..+++.|+.-++.|.+
T Consensus 54 e~v~aA~~~dv~vIgvSsl~g~h~~l~~~-------lve~lre~G~~~--i~v~~GGvip~~d~~~l~~~G~~~if~pgt 124 (143)
T COG2185 54 EAVRAAVEEDVDVIGVSSLDGGHLTLVPG-------LVEALREAGVED--ILVVVGGVIPPGDYQELKEMGVDRIFGPGT 124 (143)
T ss_pred HHHHHHHhcCCCEEEEEeccchHHHHHHH-------HHHHHHHhCCcc--eEEeecCccCchhHHHHHHhCcceeeCCCC
Confidence 44555666777777666555444444433 678888888843 233455567888899999999999999976
Q ss_pred h
Q 019100 307 A 307 (346)
Q Consensus 307 ~ 307 (346)
+
T Consensus 125 ~ 125 (143)
T COG2185 125 P 125 (143)
T ss_pred C
Confidence 4
No 172
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.35 E-value=82 Score=27.19 Aligned_cols=115 Identities=11% Similarity=0.147 Sum_probs=71.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh---cCCC---CCHHHHHHHcCCCCCCeeEEEeccCChhhH-
Q 019100 218 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT---RKVD---HGTVTFLDKIEFLQNNLLSAHTVWVNHTEI- 290 (346)
Q Consensus 218 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~---~g~~---~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i- 290 (346)
.....+.|+.+.+.++++|+++..-+.+.. ..+.+.+. +..+ .+-.++|+..+-.+..+++.-+++.+.+|+
T Consensus 61 ~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~-~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~ 139 (250)
T PRK13397 61 QGLGLQGIRYLHEVCQEFGLLSVSEIMSER-QLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYL 139 (250)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeeCCHH-HHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHH
Confidence 344677888899999999999888775433 34444332 1101 123567888888888888888988998885
Q ss_pred ---HHHHhcCC-eEEEChhhhccc-------cccccHHHHHH-cCCcEEEcCCCC
Q 019100 291 ---GLLSRAGV-KVSHCPASAMRM-------LGFAPIKEMLH-ADICVSLGTDGA 333 (346)
Q Consensus 291 ---~~l~~~g~-~v~~~p~~~~~l-------~~~~~~~~~~~-~Gv~v~~GTD~~ 333 (346)
+.+++.|. .++.|.+..... .++..+..+++ -+++|.++.-+.
T Consensus 140 ~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs 194 (250)
T PRK13397 140 GALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHS 194 (250)
T ss_pred HHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCC
Confidence 45555564 466666332111 12233455555 678888874443
No 173
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=66.27 E-value=57 Score=24.99 Aligned_cols=72 Identities=18% Similarity=0.040 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhh
Q 019100 227 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 306 (346)
Q Consensus 227 ~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~ 306 (346)
+.++.|.+.+..+.+=+.-.....+.+.. ..+.+++.+... -.++..|.. .+++.+.+++.|+.-.+.|.+
T Consensus 44 ~~v~aa~e~~adii~iSsl~~~~~~~~~~-------~~~~L~~~g~~~-i~vivGG~~-~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLAGGHLTLVPA-------LRKELDKLGRPD-ILVVVGGVI-PPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred HHHHHHHHcCCCEEEEcCchhhhHHHHHH-------HHHHHHhcCCCC-CEEEEeCCC-ChHhHHHHHHCCCCEEECCCC
Confidence 45566778888887777655444444433 566777777532 334455544 456788899999998888876
Q ss_pred h
Q 019100 307 A 307 (346)
Q Consensus 307 ~ 307 (346)
+
T Consensus 115 ~ 115 (132)
T TIGR00640 115 P 115 (132)
T ss_pred C
Confidence 5
No 174
>PRK06361 hypothetical protein; Provisional
Probab=66.05 E-value=77 Score=26.35 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=41.1
Q ss_pred eEEEeccCChhhHHHHHhcCCeEEEChhhhccccccccHHHHHHcCCcEEEcCCCCC
Q 019100 278 LSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 278 ~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
++.|--.+..+.++.+++.|+.+.++...........-++.+.+.|+++++|||...
T Consensus 116 vlaHpd~~~~~~~~~~~~~~~~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~ 172 (212)
T PRK06361 116 ILAHPGLITEEEAELAAENGVFLEITARKGHSLTNGHVARIAREAGAPLVINTDTHA 172 (212)
T ss_pred EecCcchhhHHHHHHHHHcCeEEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCC
Confidence 557766666777899999999998875321111223456777889999999999874
No 175
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=65.46 E-value=92 Score=27.05 Aligned_cols=96 Identities=9% Similarity=-0.001 Sum_probs=66.9
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh-----cCC-CCCHHHHHHHcCCCCCCeeEEE
Q 019100 208 IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT-----RKV-DHGTVTFLDKIEFLQNNLLSAH 281 (346)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~-----~g~-~~~~~~~l~~~g~l~~~~~~~H 281 (346)
+++-.+|..-....++.|+.+.+.+.++|+++..-+-. ...++.+.+. .|. .+.-.++|++.|-.+.++++--
T Consensus 81 fKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~-~~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKR 159 (286)
T COG2876 81 FKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD-VRDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKR 159 (286)
T ss_pred CCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEecC-HHHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEec
Confidence 33334455555667899999999999999999999854 4445554432 111 1224578899999999999999
Q ss_pred eccCChhhHHHHHhc-----CCeEEECh
Q 019100 282 TVWVNHTEIGLLSRA-----GVKVSHCP 304 (346)
Q Consensus 282 ~~~~~~~~i~~l~~~-----g~~v~~~p 304 (346)
+.+.|-+|+-..+++ +-.++.|=
T Consensus 160 g~~aTieEwL~AAEYI~s~GN~~vILCE 187 (286)
T COG2876 160 GLSATIEEWLNAAEYILSHGNGNVILCE 187 (286)
T ss_pred CccccHHHHHHHHHHHHhCCCCcEEEEe
Confidence 999998887655554 45666774
No 176
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=65.27 E-value=17 Score=34.19 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=24.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEecCC
Q 019100 218 MNATDRLLLETRDMAREFKTGIHMHVAEI 246 (346)
Q Consensus 218 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 246 (346)
.....+.+++.++++++.|..+.+|+-+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~ 181 (430)
T COG0044 153 GALDDDVLEEALEYAAELGALILVHAEDD 181 (430)
T ss_pred CcCCHHHHHHHHHHHHhcCCeEEEecCCh
Confidence 34678889999999999999999998433
No 177
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=63.37 E-value=65 Score=24.60 Aligned_cols=72 Identities=13% Similarity=-0.032 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEecc-CCh----hhHHHHHhcCCeEE
Q 019100 227 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW-VNH----TEIGLLSRAGVKVS 301 (346)
Q Consensus 227 ~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~-~~~----~~i~~l~~~g~~v~ 301 (346)
++++.|.+++..+..=..-.......+.+ ..+.+++.|+-+..++ .-|.. ..+ ++.+++++.|+..+
T Consensus 41 ~~v~aa~~~~adiVglS~L~t~~~~~~~~-------~~~~l~~~gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 41 EFIDAAIETDADAILVSSLYGHGEIDCKG-------LREKCDEAGLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred HHHHHHHHcCCCEEEEeccccCCHHHHHH-------HHHHHHHCCCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEE
Confidence 34445666665544332222222222222 5566667666443333 33332 232 34577999999888
Q ss_pred EChhh
Q 019100 302 HCPAS 306 (346)
Q Consensus 302 ~~p~~ 306 (346)
+.|.+
T Consensus 113 f~pgt 117 (128)
T cd02072 113 FAPGT 117 (128)
T ss_pred ECcCC
Confidence 88754
No 178
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=61.42 E-value=18 Score=31.31 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=32.0
Q ss_pred HHHHHhcCCeEEEChhhhcc-ccc----cccHHHHHHcCCcEEEcCCCCC
Q 019100 290 IGLLSRAGVKVSHCPASAMR-MLG----FAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 290 i~~l~~~g~~v~~~p~~~~~-l~~----~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
++.+++.|+.+.+.-..-.+ ... ..-++.+.+.|+++++|||...
T Consensus 191 l~~~~~~g~~lEiNt~g~r~~~~~~yP~~~il~~~~~~g~~itlgSDAH~ 240 (253)
T TIGR01856 191 LKLVASQGKALEFNTSGLRKPLEEAYPSKELLNLAKELGIPLVLGSDAHG 240 (253)
T ss_pred HHHHHHcCCEEEEEcHhhcCCCCCCCCCHHHHHHHHHcCCCEEecCCCCC
Confidence 67788999998777643211 111 2346888999999999999775
No 179
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=61.39 E-value=96 Score=25.87 Aligned_cols=76 Identities=12% Similarity=0.049 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCC
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 298 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~ 298 (346)
..+++...++++.+.+.|+++.=-...+....+. ..++.++++ .+..+.=|+-++.++++...+.|.
T Consensus 18 ~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~----------i~~l~~~~~---~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPLNSPDPFDS----------IAALVKALG---DRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHH----------HHHHHHHcC---CCcEEeEEecCCHHHHHHHHHcCC
Confidence 3478888889999999998844333233322221 112223333 245667788899999999999999
Q ss_pred eEEEChhhh
Q 019100 299 KVSHCPASA 307 (346)
Q Consensus 299 ~v~~~p~~~ 307 (346)
..+++|..+
T Consensus 85 ~fivsp~~~ 93 (206)
T PRK09140 85 RLIVTPNTD 93 (206)
T ss_pred CEEECCCCC
Confidence 999999653
No 180
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.24 E-value=83 Score=26.40 Aligned_cols=94 Identities=9% Similarity=-0.004 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCC
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 298 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~ 298 (346)
..+.+...++.+.+.+.|+++.==-..++...+ .++.+++. + ++..+.=++-+++++.+...+.|.
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~-----------~I~~l~~~-~--p~~~IGAGTVl~~~~a~~a~~aGA 88 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRTPAALE-----------AIRLIAKE-V--PEALIGAGTVLNPEQLAQAIEAGA 88 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCccHHH-----------HHHHHHHH-C--CCCEEEEeeccCHHHHHHHHHcCC
Confidence 446777778888888888884322222222222 22223221 1 256667778889999999999999
Q ss_pred eEEEChhhhccc------------cc-cc--cHHHHHHcCCcE
Q 019100 299 KVSHCPASAMRM------------LG-FA--PIKEMLHADICV 326 (346)
Q Consensus 299 ~v~~~p~~~~~l------------~~-~~--~~~~~~~~Gv~v 326 (346)
.++++|..+..+ .| .. .+.++.+.|..+
T Consensus 89 ~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~ 131 (212)
T PRK05718 89 QFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSELMLGMELGLRT 131 (212)
T ss_pred CEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCE
Confidence 999999653211 12 11 267778888754
No 181
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=59.34 E-value=65 Score=26.95 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeE
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKV 300 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v 300 (346)
+.++-..+.+..-+.|++..=--..++...+... ++.++.+ +.++.-|+-+++++++.+.+.|..+
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~----------~l~~~~p----~~lIGAGTVL~~~q~~~a~~aGa~f 88 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTPAALEAIR----------ALAKEFP----EALIGAGTVLNPEQARQAIAAGAQF 88 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHH----------HHHHhCc----ccEEccccccCHHHHHHHHHcCCCE
Confidence 4555555666666777764333233333232221 1112222 6677788889999999999999999
Q ss_pred EEChhhh
Q 019100 301 SHCPASA 307 (346)
Q Consensus 301 ~~~p~~~ 307 (346)
+++|-.+
T Consensus 89 iVsP~~~ 95 (211)
T COG0800 89 IVSPGLN 95 (211)
T ss_pred EECCCCC
Confidence 9999654
No 182
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=58.28 E-value=67 Score=29.52 Aligned_cols=137 Identities=20% Similarity=0.177 Sum_probs=71.5
Q ss_pred CeEEecCCCEEeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEeeecCc
Q 019100 68 DQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (346)
Q Consensus 68 ~~viD~~g~~v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~ 147 (346)
.++||++|++|+||+||.|+|+.... ....++... ..+.++..|||++.+++.
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~~-----------------------~~~~e~~~s----~s~aA~~GGvTtii~~p~ 54 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREPG-----------------------FEYKETLES----GAKAAAAGGFTTVVCMPN 54 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCCC-----------------------ccccchHHH----HHHHHHhCCCcEEEECCC
Confidence 47899999999999999999996621 001122222 225677899999999963
Q ss_pred C-----CHHHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeecccccCCH
Q 019100 148 Q-----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATD 222 (346)
Q Consensus 148 ~-----~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (346)
. ..+.+........-........+ + ++.... ..+.+++...+.+ . |... +........+.
T Consensus 55 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~----~~~~~~~i~~l~~----~--G~~~--~k~~~~~~~~~ 119 (374)
T cd01317 55 TNPVIDNPAVVELLKNRAKDVGIVRVLPI--G-ALTKGL----KGEELTEIGELLE----A--GAVG--FSDDGKPIQDA 119 (374)
T ss_pred CCCCCCCHHHHHHHHHHhccCCceeEEEE--E-EEeeCC----CcccHHHHHHHHH----C--CcEE--EEcCCcCCCCH
Confidence 2 12333222222211111000000 0 011100 0011222222221 1 1111 11222233567
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCh
Q 019100 223 RLLLETRDMAREFKTGIHMHVAEIP 247 (346)
Q Consensus 223 ~~l~~~~~~a~~~g~~v~~H~~~~~ 247 (346)
..+.++++.+++.|.++.+|+ |+.
T Consensus 120 ~~l~~~~~~~~~~g~~v~~H~-E~~ 143 (374)
T cd01317 120 ELLRRALEYAAMLDLPIIVHP-EDP 143 (374)
T ss_pred HHHHHHHHHHHhcCCeEEEec-CCh
Confidence 788889999999999999999 444
No 183
>PRK15108 biotin synthase; Provisional
Probab=57.33 E-value=98 Score=28.18 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEE
Q 019100 222 DRLLLETRDMAREFKTGIHMH 242 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H 242 (346)
-+.+.++++.+++.++.+.+.
T Consensus 110 ~e~i~~~i~~ik~~~i~v~~s 130 (345)
T PRK15108 110 MPYLEQMVQGVKAMGLETCMT 130 (345)
T ss_pred HHHHHHHHHHHHhCCCEEEEe
Confidence 345555666666666555443
No 184
>PRK08392 hypothetical protein; Provisional
Probab=56.81 E-value=17 Score=30.44 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHHHHhcCCeEEEChhhhccccccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 290 IGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 290 i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
++.++++|+.+.+.-.- ......-++.+.+.|+++++|||.....
T Consensus 143 ~~~~~~~g~~lEiNt~~--~~p~~~~l~~~~~~G~~~~igSDAH~~~ 187 (215)
T PRK08392 143 LDLAEAYGKAFEISSRY--RVPDLEFIRECIKRGIKLTFASDAHRPE 187 (215)
T ss_pred HHHHHHhCCEEEEeCCC--CCCCHHHHHHHHHcCCEEEEeCCCCChH
Confidence 67888899888766421 1122234688899999999999987543
No 185
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=53.75 E-value=40 Score=27.92 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCe
Q 019100 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 299 (346)
Q Consensus 220 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~ 299 (346)
.+.+...++.+...+.|+++.==...++...+. ++.+.+. + ++.++.=|+-++.++++...+.|..
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~-----------I~~l~~~-~--p~~~vGAGTV~~~e~a~~a~~aGA~ 82 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTPNALEA-----------IEALRKE-F--PDLLVGAGTVLTAEQAEAAIAAGAQ 82 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTSTTHHHH-----------HHHHHHH-H--TTSEEEEES--SHHHHHHHHHHT-S
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCccHHHH-----------HHHHHHH-C--CCCeeEEEeccCHHHHHHHHHcCCC
Confidence 356667778888888898864444444433332 2222221 1 3567788888999999999999999
Q ss_pred EEEChhhh
Q 019100 300 VSHCPASA 307 (346)
Q Consensus 300 v~~~p~~~ 307 (346)
.+++|..+
T Consensus 83 FivSP~~~ 90 (196)
T PF01081_consen 83 FIVSPGFD 90 (196)
T ss_dssp EEEESS--
T ss_pred EEECCCCC
Confidence 99999654
No 186
>TIGR03586 PseI pseudaminic acid synthase.
Probab=53.52 E-value=1.7e+02 Score=26.41 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCC-----C---CHHHHHHHcCCCCCCeeEEEeccCChhhH-
Q 019100 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD-----H---GTVTFLDKIEFLQNNLLSAHTVWVNHTEI- 290 (346)
Q Consensus 220 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~-----~---~~~~~l~~~g~l~~~~~~~H~~~~~~~~i- 290 (346)
.+.+.+.++.+.++++|+.+..-..+.. ..+.+. .++.. + +-..+|+..+-.+.++++.-|. .+-+|+
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~-svd~l~-~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~-~t~~Ei~ 150 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDET-AVDFLE-SLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI-ATLEEIQ 150 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHH-HHHHHH-HcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC-CCHHHHH
Confidence 3678888899999999999888876543 344442 23221 1 1356677777777788877776 466664
Q ss_pred ---HHHHhcCC-eEEE--Chhhhccc---cccccHHHHHH-cCCcEEEcCCCCC
Q 019100 291 ---GLLSRAGV-KVSH--CPASAMRM---LGFAPIKEMLH-ADICVSLGTDGAP 334 (346)
Q Consensus 291 ---~~l~~~g~-~v~~--~p~~~~~l---~~~~~~~~~~~-~Gv~v~~GTD~~~ 334 (346)
+.+.+.|. .++. |.++--.. .++..++.|.+ -+++|++ ||+..
T Consensus 151 ~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~-SDHt~ 203 (327)
T TIGR03586 151 EAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGL-SDHTL 203 (327)
T ss_pred HHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEe-eCCCC
Confidence 45555554 3444 54321100 12333444443 4788888 67653
No 187
>PRK08123 histidinol-phosphatase; Reviewed
Probab=53.12 E-value=20 Score=31.27 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=33.1
Q ss_pred hHHHHHhcCCeEEEChhhhcc--cc----ccccHHHHHHcCCcEEEcCCCCCC
Q 019100 289 EIGLLSRAGVKVSHCPASAMR--ML----GFAPIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 289 ~i~~l~~~g~~v~~~p~~~~~--l~----~~~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
-++.++++|+.+.+.-..-.+ .. ...-++.+.+.|+++++|||....
T Consensus 202 il~~~~~~g~~lEINtsgl~~~~~~~~yP~~~il~~~~e~g~~itlgSDAH~~ 254 (270)
T PRK08123 202 ILALIKKRGYELDFNTAGLRKPYCGEPYPPGEIITLAKKLGIPLVYGSDAHSA 254 (270)
T ss_pred HHHHHHHcCCEEEEEchhhcCCCCCCCCCcHHHHHHHHHcCCCEEEeCCCCCH
Confidence 367889999999877643211 11 122468889999999999997753
No 188
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=49.27 E-value=89 Score=28.64 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEeeccccc---CCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHH
Q 019100 193 QKELYAKHHHAADGRIRIWFGIRQIMN---ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDK 269 (346)
Q Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~ 269 (346)
..+.++..... |.-.++.+.+.+.. .-.+.++++.++|+++|+.+.+-+....- +.+|....-...+.+
T Consensus 16 ~~~yi~~a~~~--Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l------~~lg~~~~dl~~~~~ 87 (357)
T PF05913_consen 16 NKAYIEKAAKY--GFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVL------KKLGISYDDLSFFKE 87 (357)
T ss_dssp HHHHHHHHHCT--TEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHH------HTTT-BTTBTHHHHH
T ss_pred HHHHHHHHHHC--CCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHH------HHcCCCHHHHHHHHH
Confidence 34444554443 33333344433322 22467888999999999999999976542 344444333566677
Q ss_pred cCCCCCCeeEEEeccCChhhHHHHHhcCCeEEEChhh
Q 019100 270 IEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 306 (346)
Q Consensus 270 ~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~ 306 (346)
+|+-+.| +-.+ .+.++++.|.+.|..+....++
T Consensus 88 lGi~~lR--lD~G--f~~~~ia~ls~ng~~I~LNASt 120 (357)
T PF05913_consen 88 LGIDGLR--LDYG--FSGEEIAKLSKNGIKIELNAST 120 (357)
T ss_dssp HT-SEEE--ESSS---SCHHHHHHTTT-SEEEEETTT
T ss_pred cCCCEEE--ECCC--CCHHHHHHHHhCCCEEEEECCC
Confidence 7775433 2233 3456677777777777776654
No 189
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=49.20 E-value=1.2e+02 Score=23.35 Aligned_cols=43 Identities=12% Similarity=0.022 Sum_probs=24.7
Q ss_pred HHHHHHHcCCCCCCeeEEEecc-CChhh----HHHHHhcCCeEEEChhh
Q 019100 263 TVTFLDKIEFLQNNLLSAHTVW-VNHTE----IGLLSRAGVKVSHCPAS 306 (346)
Q Consensus 263 ~~~~l~~~g~l~~~~~~~H~~~-~~~~~----i~~l~~~g~~v~~~p~~ 306 (346)
..+.+++.|+-+.. ++.-|.. ..+++ .+++++.|+.-++.|.+
T Consensus 72 ~~~~l~~~gl~~~~-vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 72 LRQKCDEAGLEGIL-LYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT 119 (134)
T ss_pred HHHHHHHCCCCCCE-EEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC
Confidence 55666677764433 3344432 33333 34688888877777754
No 190
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=49.05 E-value=65 Score=27.95 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCe-eEE-EeccCChhhHHHHHhc--CCeEEEC
Q 019100 228 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNL-LSA-HTVWVNHTEIGLLSRA--GVKVSHC 303 (346)
Q Consensus 228 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~-~~~-H~~~~~~~~i~~l~~~--g~~v~~~ 303 (346)
+...+..+|+|.+.=-. ++....+..++ ..+++++++. +. +++ -++-+|++-+.++... +++-++-
T Consensus 130 l~~~v~~~~IPfhhip~-~~~~k~e~E~~------~~~ll~~~~~---DlvVLARYMqILS~d~~~~~~g~iINIHHSFL 199 (287)
T COG0788 130 LRPLVERFDIPFHHIPV-TKENKAEAEAR------LLELLEEYGA---DLVVLARYMQILSPDFVERFPGKIINIHHSFL 199 (287)
T ss_pred HHHHHHHcCCCeeeccC-CCCcchHHHHH------HHHHHHHhCC---CEEeehhhHhhCCHHHHHhccCcEEEeccccc
Confidence 44577788888763322 22211222221 5667777773 32 222 2445777766655543 2333333
Q ss_pred hhhhccccccccHHHHHHcCCcEEEcCCCCC
Q 019100 304 PASAMRMLGFAPIKEMLHADICVSLGTDGAP 334 (346)
Q Consensus 304 p~~~~~l~~~~~~~~~~~~Gv~v~~GTD~~~ 334 (346)
|.. -|..|++++.+.||++.=.|=+..
T Consensus 200 PaF----~GA~PY~QA~eRGVKlIGATAHYV 226 (287)
T COG0788 200 PAF----IGANPYHQAYERGVKLIGATAHYV 226 (287)
T ss_pred ccC----CCCChHHHHHhcCCeEeeeeeeec
Confidence 322 578899999999999988887664
No 191
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=49.03 E-value=1.1e+02 Score=25.21 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=49.3
Q ss_pred HHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEecc--CChhhHHHHHhc--CCeEEEC
Q 019100 228 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW--VNHTEIGLLSRA--GVKVSHC 303 (346)
Q Consensus 228 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~--~~~~~i~~l~~~--g~~v~~~ 303 (346)
..++|+++|++..+--...-...++...+ ..+.+++. ++++++--|.+ ++++-+.+++.+ +++.+.-
T Consensus 42 ~lerA~~~gIpt~~~~~k~~~~r~~~d~~------l~~~l~~~---~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLL 112 (200)
T COG0299 42 ALERAAKAGIPTVVLDRKEFPSREAFDRA------LVEALDEY---GPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLL 112 (200)
T ss_pred HHHHHHHcCCCEEEeccccCCCHHHHHHH------HHHHHHhc---CCCEEEEcchHHHcCHHHHHHhhcceEecCcccc
Confidence 57789999998644322111122222111 34444444 44766555544 677777777653 4444444
Q ss_pred hhhhccccccccHHHHHHcCCcE
Q 019100 304 PASAMRMLGFAPIKEMLHADICV 326 (346)
Q Consensus 304 p~~~~~l~~~~~~~~~~~~Gv~v 326 (346)
|.. .|.-..++++++|+++
T Consensus 113 P~f----~G~h~~~~A~~aG~k~ 131 (200)
T COG0299 113 PAF----PGLHAHEQALEAGVKV 131 (200)
T ss_pred cCC----CCchHHHHHHHcCCCc
Confidence 422 5777889999999984
No 192
>PRK06740 histidinol-phosphatase; Validated
Probab=48.94 E-value=33 Score=31.02 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=31.9
Q ss_pred HHHHHhcCCeEEEChhhhccc--ccc----ccHHHHHHcCCcEEEcCCCCCC
Q 019100 290 IGLLSRAGVKVSHCPASAMRM--LGF----APIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 290 i~~l~~~g~~v~~~p~~~~~l--~~~----~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
++.++++|+.+.+.-.+..+- ... .-++.+.+.|+++++|||++..
T Consensus 245 ~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgSDAH~p 296 (331)
T PRK06740 245 ARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSSDAHYP 296 (331)
T ss_pred HHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEEeeCCCCH
Confidence 467788899987776432111 112 2368889999999999997753
No 193
>PLN02389 biotin synthase
Probab=48.74 E-value=2.1e+02 Score=26.46 Aligned_cols=14 Identities=21% Similarity=0.174 Sum_probs=5.7
Q ss_pred HHHHHHHHHHcCCe
Q 019100 225 LLETRDMAREFKTG 238 (346)
Q Consensus 225 l~~~~~~a~~~g~~ 238 (346)
+.++++..++.++.
T Consensus 155 i~eiir~ik~~~l~ 168 (379)
T PLN02389 155 ILEYVKEIRGMGME 168 (379)
T ss_pred HHHHHHHHhcCCcE
Confidence 33344444444443
No 194
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=47.47 E-value=1.4e+02 Score=23.56 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCC-eeEEEecc--------CChhh
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN-LLSAHTVW--------VNHTE 289 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~-~~~~H~~~--------~~~~~ 289 (346)
..+++.|+.+.+.|+++|..-.+-+..+... ....++...- +.. +.+.|... +.++-
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~t-------------A~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~ 75 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYT-------------ALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEV 75 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHH-------------HHHHHHhccc-CceEEEEEeecccccCCceecCHHH
Confidence 3478889999999999998855555433221 1112221111 012 23344332 34455
Q ss_pred HHHHHhcCCeEEEChhh--------hcccccccc------HHHHHHcCCcEEE
Q 019100 290 IGLLSRAGVKVSHCPAS--------AMRMLGFAP------IKEMLHADICVSL 328 (346)
Q Consensus 290 i~~l~~~g~~v~~~p~~--------~~~l~~~~~------~~~~~~~Gv~v~~ 328 (346)
-+.|+++|..+..+-.. ..++.|..| --++...|++|++
T Consensus 76 ~~~L~erGa~v~~~sHalSg~eRsis~kfGG~~p~eiiAetLR~fg~G~KVcv 128 (186)
T COG1751 76 RKELKERGAKVLTQSHALSGVERSISRKFGGYSPLEIIAETLRMFGQGVKVCV 128 (186)
T ss_pred HHHHHHcCceeeeehhhhhcchhhhhhhcCCcchHHHHHHHHHHhcCCcEEEE
Confidence 67899999988766421 112234333 2447888888765
No 195
>PRK05588 histidinol-phosphatase; Provisional
Probab=46.49 E-value=41 Score=29.00 Aligned_cols=47 Identities=11% Similarity=-0.017 Sum_probs=32.8
Q ss_pred hhHHHHHhcCCeEEEChhhhcccc----ccccHHHHHHcCCc-EEEcCCCCC
Q 019100 288 TEIGLLSRAGVKVSHCPASAMRML----GFAPIKEMLHADIC-VSLGTDGAP 334 (346)
Q Consensus 288 ~~i~~l~~~g~~v~~~p~~~~~l~----~~~~~~~~~~~Gv~-v~~GTD~~~ 334 (346)
+.++.++++|+.+.++-.+-.+-. ....++.+.+.|++ +++|||++.
T Consensus 170 ~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDAH~ 221 (255)
T PRK05588 170 EILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLGSDAHN 221 (255)
T ss_pred HHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEECCCCC
Confidence 336788999999877764311101 12358889999998 799999875
No 196
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=44.54 E-value=31 Score=28.87 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=12.7
Q ss_pred HHHHHHhcCceEeeecC
Q 019100 130 CGIELIHSGVTCFAEAG 146 (346)
Q Consensus 130 ~~~~~l~~GvTt~~d~~ 146 (346)
-++++.+.|||++..-+
T Consensus 25 ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 25 MLREAVRQGVTKIVATS 41 (254)
T ss_pred HHHHHHHcCceEEeecc
Confidence 34678899999987643
No 197
>PRK07329 hypothetical protein; Provisional
Probab=43.78 E-value=34 Score=29.42 Aligned_cols=46 Identities=11% Similarity=-0.052 Sum_probs=32.2
Q ss_pred HHHHHhcCCeEEEChhhhc-cccc---cccHHHHHHcCCc-EEEcCCCCCC
Q 019100 290 IGLLSRAGVKVSHCPASAM-RMLG---FAPIKEMLHADIC-VSLGTDGAPS 335 (346)
Q Consensus 290 i~~l~~~g~~v~~~p~~~~-~l~~---~~~~~~~~~~Gv~-v~~GTD~~~~ 335 (346)
++.++++|+.+.+...+-. .... ...++.+.+.|++ |++|||....
T Consensus 171 ~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~ 221 (246)
T PRK07329 171 FAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGSDAHKL 221 (246)
T ss_pred HHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecCCCCCH
Confidence 5788889999877764321 1111 2358888999985 9999998753
No 198
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=42.11 E-value=2.1e+02 Score=26.03 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=20.4
Q ss_pred ccccCCHHHHHHHHHHHHHcCCeEEEEecCC
Q 019100 216 QIMNATDRLLLETRDMAREFKTGIHMHVAEI 246 (346)
Q Consensus 216 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 246 (346)
|.+.+.++ +.++++.++++|+.+.+.-.+.
T Consensus 62 GEPll~~~-~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 62 GEPLARPD-LVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cccccccc-HHHHHHHHHHcCCeEEEEeCCc
Confidence 55555555 5568889999998776655443
No 199
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=41.88 E-value=2.2e+02 Score=25.76 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCC--------CCHHHHHHHcCCCCCCeeEEEeccCChhhH-
Q 019100 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD--------HGTVTFLDKIEFLQNNLLSAHTVWVNHTEI- 290 (346)
Q Consensus 220 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~--------~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i- 290 (346)
++.+.++.+.+.|+++|+.+..-..+.. ..+.+. .++.. .+-..+|+..+-.+.++++.-|. .+.+|+
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~-svd~l~-~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm-atl~Ei~ 149 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE-SADFLE-DLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM-ATLEEIE 149 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH-HHHHHH-hcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC-CCHHHHH
Confidence 4688899999999999999988876543 344443 23321 11345666666667777776666 466664
Q ss_pred ---HHHHhcCC-----eEEEChhhhccc---cccccHHHHHH-cCCcEEEcCCCCC
Q 019100 291 ---GLLSRAGV-----KVSHCPASAMRM---LGFAPIKEMLH-ADICVSLGTDGAP 334 (346)
Q Consensus 291 ---~~l~~~g~-----~v~~~p~~~~~l---~~~~~~~~~~~-~Gv~v~~GTD~~~ 334 (346)
+.+++.|. .+-.|.+..-.. ..+..++.|.+ -+++|++ ||+..
T Consensus 150 ~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~-SdHt~ 204 (329)
T TIGR03569 150 AAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGY-SDHTL 204 (329)
T ss_pred HHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEE-CCCCc
Confidence 45555564 344465431110 22334444443 4788888 68764
No 200
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=41.08 E-value=2.5e+02 Score=24.72 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=74.9
Q ss_pred cCC-HHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh---cCCC---CCHHHHHHHcCCCCCCeeEEEeccCChhhHH
Q 019100 219 NAT-DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT---RKVD---HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIG 291 (346)
Q Consensus 219 ~~~-~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~---~g~~---~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~ 291 (346)
... ++.|+-+.+..+++|+++..-+.+.. ..+.+.+. ...+ .+..++|.+.+..+..+.+=.+++++++|+.
T Consensus 69 G~G~eeGL~iL~~vk~~~glpvvTeV~~~~-q~~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~ 147 (290)
T PLN03033 69 GPGMAEGLKILEKVKVAYDLPIVTDVHESS-QCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMR 147 (290)
T ss_pred CCCHHHHHHHHHHHHHHHCCceEEeeCCHH-HHHHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHH
Confidence 445 78899888888899999999987654 34433332 1111 1145677888888888888889999998854
Q ss_pred ----HHHhcC-CeEEEChhhhcc----c-cccccHHHHHHcCCcEEEcCCC
Q 019100 292 ----LLSRAG-VKVSHCPASAMR----M-LGFAPIKEMLHADICVSLGTDG 332 (346)
Q Consensus 292 ----~l~~~g-~~v~~~p~~~~~----l-~~~~~~~~~~~~Gv~v~~GTD~ 332 (346)
.+.+.| -.+..|-+...+ + .++..+..+.+.+.+|.+--=+
T Consensus 148 ~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~~~lPVI~DpSH 198 (290)
T PLN03033 148 NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITH 198 (290)
T ss_pred HHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCc
Confidence 444444 457777654311 1 3455677777889999886444
No 201
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=40.90 E-value=1.8e+02 Score=23.05 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecC
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAE 245 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~ 245 (346)
+.+.++++.+.++++|++..+++..
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~S 34 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVS 34 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4455666666777777776666543
No 202
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=39.60 E-value=3e+02 Score=26.39 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHHcCCe-EEEEecCChh--hHHHHHHhcCCCCCHHHHHHHc----CCCCCCeeEEEeccCChhhHH
Q 019100 219 NATDRLLLETRDMAREFKTG-IHMHVAEIPY--ENQVVMDTRKVDHGTVTFLDKI----EFLQNNLLSAHTVWVNHTEIG 291 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~-v~~H~~~~~~--~~~~~~~~~g~~~~~~~~l~~~----g~l~~~~~~~H~~~~~~~~i~ 291 (346)
..+++++.+.++.+.+.|.. +.+..++.+. ..+.+.+ .++.+.+. |.+ .++.+. ...++.++++
T Consensus 114 ~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e-------~i~~I~~~~~~~g~i-~~v~in-ig~lt~eey~ 184 (469)
T PRK09613 114 KLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILE-------SIKTIYSTKHGNGEI-RRVNVN-IAPTTVENYK 184 (469)
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHH-------HHHHHHHhccccCcc-eeeEEE-eecCCHHHHH
Confidence 34677777777777777754 3333333311 2333222 33333332 111 123333 3457888888
Q ss_pred HHHhcCCeE
Q 019100 292 LLSRAGVKV 300 (346)
Q Consensus 292 ~l~~~g~~v 300 (346)
+|++.|+.-
T Consensus 185 ~LkeaGv~~ 193 (469)
T PRK09613 185 KLKEAGIGT 193 (469)
T ss_pred HHHHcCCCE
Confidence 888888654
No 203
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=39.48 E-value=1.9e+02 Score=24.56 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=33.8
Q ss_pred ChhhHHHHHhcCCeEEEChhhhccc---------cc-cccHHHHHHcCCcEEEcCCCCCCC
Q 019100 286 NHTEIGLLSRAGVKVSHCPASAMRM---------LG-FAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 286 ~~~~i~~l~~~g~~v~~~p~~~~~l---------~~-~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
....+..++++|+.+.++-..-.+- .. ..-++...+.|+++.+|||.....
T Consensus 120 ~~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~ 180 (237)
T PRK00912 120 NHVLAKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCY 180 (237)
T ss_pred CHHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccc
Confidence 3455788889998887665431110 01 134567788899999999987544
No 204
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=39.27 E-value=2.6e+02 Score=24.39 Aligned_cols=118 Identities=11% Similarity=0.149 Sum_probs=72.7
Q ss_pred ccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh---cCCC---CCHHHHHHHcCCCCCCeeEEEeccCChhh
Q 019100 216 QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT---RKVD---HGTVTFLDKIEFLQNNLLSAHTVWVNHTE 289 (346)
Q Consensus 216 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~---~g~~---~~~~~~l~~~g~l~~~~~~~H~~~~~~~~ 289 (346)
+.....++.++.+.+.+++.|+++..-..+.. ..+.+.+. +..+ .+-..+++..+-.+..+.+.-++..+.+|
T Consensus 71 s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~-~~~~l~~~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e 149 (266)
T PRK13398 71 SFQGLGEEGLKILKEVGDKYNLPVVTEVMDTR-DVEEVADYADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEE 149 (266)
T ss_pred ccCCcHHHHHHHHHHHHHHcCCCEEEeeCChh-hHHHHHHhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHH
Confidence 33445688999999999999999998876544 34444332 1111 11345778888888888888888888777
Q ss_pred HH----HHHhcCC-eEEEChh-----hhcc-c-cccccHHHHHHc-CCcEEEcCCCCC
Q 019100 290 IG----LLSRAGV-KVSHCPA-----SAMR-M-LGFAPIKEMLHA-DICVSLGTDGAP 334 (346)
Q Consensus 290 i~----~l~~~g~-~v~~~p~-----~~~~-l-~~~~~~~~~~~~-Gv~v~~GTD~~~ 334 (346)
+. .+...|- .++.|-. ++.. . .++..+..+.+. +++|.+-+|+..
T Consensus 150 ~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~ 207 (266)
T PRK13398 150 WLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHAT 207 (266)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcc
Confidence 54 4444443 3444432 1111 1 233445556555 888888777654
No 205
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=38.85 E-value=1.1e+02 Score=24.12 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=26.3
Q ss_pred HHHHhcCceEee--ecC-cCCHHHHHHHHHHhCCeEEEeccc
Q 019100 132 IELIHSGVTCFA--EAG-GQHVSEMAKAVELLGLRACLVQST 170 (346)
Q Consensus 132 ~~~l~~GvTt~~--d~~-~~~~~~~~~~~~~~g~~~~~~~~~ 170 (346)
..+.+.|++++. |+. ........+.....+++.+.+.++
T Consensus 23 ~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 23 EQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp HHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 557788988765 442 123455666677789999888775
No 206
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=37.60 E-value=1.2e+02 Score=25.34 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=48.2
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccC
Q 019100 206 GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV 285 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~ 285 (346)
|+++++++...-..-+-..|.+ ....++.|..|.+-..|+...-+ ..+.++.+..+-+..+.-++..+
T Consensus 4 GrLkIflG~apGVGKTy~ML~e-a~~l~~~G~DVViG~vethgR~e-----------t~~l~~gLe~iP~~~i~y~g~~~ 71 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQE-AHRLKEQGVDVVIGYVETHGRPE-----------TEALLEGLEVIPRKKIEYRGRTL 71 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHH-HHHHHHTT--EEEEE---TT-HH-----------HHHHHCTS-B---EEEEETTEEE
T ss_pred ccEEEEEecCCCCCHHHHHHHH-HHHHHHCCCCEEEEEecCCCcHH-----------HHHHHcCCCcCCCeeEeeCCEec
Confidence 6778888765444445555554 44466789999998877653221 22233334444333333345555
Q ss_pred ChhhHHHHHhcCCeEEECh-h--hhccc----cccccHHHHHHcCCcEEE
Q 019100 286 NHTEIGLLSRAGVKVSHCP-A--SAMRM----LGFAPIKEMLHADICVSL 328 (346)
Q Consensus 286 ~~~~i~~l~~~g~~v~~~p-~--~~~~l----~~~~~~~~~~~~Gv~v~~ 328 (346)
.+-|++.+.++.=.++.-. . +|..- .....+.+++++||.|.-
T Consensus 72 ~E~DldaiL~R~P~vvLVDELAHtN~pgsr~~kR~qDVeeLL~aGIdV~T 121 (211)
T PF02702_consen 72 EEMDLDAILARRPQVVLVDELAHTNAPGSRHKKRYQDVEELLDAGIDVYT 121 (211)
T ss_dssp EE--HHHHHHH--SEEEES-TT-B--TT-SSSBHHHHHHHHHHTT-EEEE
T ss_pred ccCCHHHHHhcCCCEEEeCcccccCCCCCCCcccHHhHHHHHHCCCeEEE
Confidence 5555654444432222211 1 11111 124578888888888754
No 207
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.55 E-value=2.3e+02 Score=23.16 Aligned_cols=71 Identities=8% Similarity=-0.003 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeE
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKV 300 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v 300 (346)
+++.....++.+.+.|+++.=--.-+....+ ..+.+++ +.+......+.-+..++++...+.|...
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e-----------~~~~~~~---~~~~~~~g~gtvl~~d~~~~A~~~gAdg 87 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWNSDQPAE-----------LISQLRE---KLPECIIGTGTILTLEDLEEAIAAGAQF 87 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHH-----------HHHHHHH---hCCCcEEeEEEEEcHHHHHHHHHcCCCE
Confidence 5666666777777777664433322222111 1111111 1122233455556667777777777777
Q ss_pred EEChh
Q 019100 301 SHCPA 305 (346)
Q Consensus 301 ~~~p~ 305 (346)
++.|.
T Consensus 88 v~~p~ 92 (187)
T PRK07455 88 CFTPH 92 (187)
T ss_pred EECCC
Confidence 76664
No 208
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=36.81 E-value=1.3e+02 Score=27.19 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHHhcCCeEEE
Q 019100 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 302 (346)
Q Consensus 223 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~~~g~~v~~ 302 (346)
..+++++..|+++|+++.+-+..+. +...|.+...++.+.+.|+-|.| +-|++ +-+++..|.+.+..+..
T Consensus 49 ~~~~ell~~Anklg~~vivDvnPsi------l~~l~~S~~~l~~f~e~G~~glR--lD~gf--S~eei~~ms~~~lkieL 118 (360)
T COG3589 49 HRFKELLKEANKLGLRVIVDVNPSI------LKELNISLDNLSRFQELGVDGLR--LDYGF--SGEEIAEMSKNPLKIEL 118 (360)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCHHH------HhhcCCChHHHHHHHHhhhhhee--ecccC--CHHHHHHHhcCCeEEEE
Confidence 3577899999999999999986432 22334443346667778876544 34544 66888889999888888
Q ss_pred Chhh
Q 019100 303 CPAS 306 (346)
Q Consensus 303 ~p~~ 306 (346)
.++.
T Consensus 119 N~S~ 122 (360)
T COG3589 119 NAST 122 (360)
T ss_pred chhh
Confidence 8853
No 209
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=36.22 E-value=1.5e+02 Score=26.80 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHHcC-CeEEEEecCC--hhhHHHHHHhcCCCCCHHHHHH-HcCCCCCCeeEEEeccCChhhHHHHH
Q 019100 219 NATDRLLLETRDMAREFK-TGIHMHVAEI--PYENQVVMDTRKVDHGTVTFLD-KIEFLQNNLLSAHTVWVNHTEIGLLS 294 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g-~~v~~H~~~~--~~~~~~~~~~~g~~~~~~~~l~-~~g~l~~~~~~~H~~~~~~~~i~~l~ 294 (346)
..+.+++.+.++.|++.| .+.-+-...- ..+.+.+.+ .++... ..|+ .+++..| .+++++...++
T Consensus 83 l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~-------~v~~Vk~~~~l---e~c~slG-~l~~eq~~~L~ 151 (335)
T COG0502 83 LMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVE-------AIKAVKEELGL---EVCASLG-MLTEEQAEKLA 151 (335)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHH-------HHHHHHHhcCc---HHhhccC-CCCHHHHHHHH
Confidence 345666667777777777 4433332221 122222222 222222 3442 5566666 67788888888
Q ss_pred hcCCeE
Q 019100 295 RAGVKV 300 (346)
Q Consensus 295 ~~g~~v 300 (346)
+.|+.-
T Consensus 152 ~aGvd~ 157 (335)
T COG0502 152 DAGVDR 157 (335)
T ss_pred HcChhh
Confidence 888654
No 210
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=35.72 E-value=3.7e+02 Score=25.12 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=52.6
Q ss_pred HHHHHHhcCceEeeecCcC----CHHHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCC
Q 019100 130 CGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (346)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (346)
.+..+.++|++.++-+-.. +.....+.....|.+....- .+. .+|. ...+.+++-+.++.+. +.
T Consensus 103 Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i-~YT----~sPv---Ht~e~yv~~akel~~~----g~ 170 (472)
T COG5016 103 FVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTI-SYT----TSPV---HTLEYYVELAKELLEM----GV 170 (472)
T ss_pred HHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEE-Eec----cCCc---ccHHHHHHHHHHHHHc----CC
Confidence 3467889999999877422 22333555566676553321 111 1221 1234444444444433 22
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHH-HcCCeEEEEecCChh
Q 019100 206 GRIRIWFGIRQIMNATDRLLLETRDMAR-EFKTGIHMHVAEIPY 248 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~-~~g~~v~~H~~~~~~ 248 (346)
+.+ ++-.- .-..+|..-.+++...+ +.++++.+|++.+..
T Consensus 171 DSI--ciKDm-aGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG 211 (472)
T COG5016 171 DSI--CIKDM-AGLLTPYEAYELVKAIKKELPVPVELHTHATSG 211 (472)
T ss_pred CEE--Eeecc-cccCChHHHHHHHHHHHHhcCCeeEEecccccc
Confidence 211 11110 01234555555555555 478999999887764
No 211
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=34.50 E-value=1.7e+02 Score=26.29 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEE---------eccCChhhHHHHHhcC
Q 019100 227 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAH---------TVWVNHTEIGLLSRAG 297 (346)
Q Consensus 227 ~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H---------~~~~~~~~i~~l~~~g 297 (346)
++++++.++|+.|.+-....+...+. ++ +-..+++..| --.+++++++.++++|
T Consensus 153 ~lV~~~N~LgIiiDlSH~s~kt~~Dv--------------l~---~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 153 ELVREMNELGIIIDLSHLSDKTFWDV--------------LD---LSKAPVVASHSNARALVDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred HHHHHHHhcCCEEEecccCCccHHHH--------------Hh---ccCCceEEecCCchhccCCCCCCCHHHHHHHHhcC
Confidence 47778888888887643333322221 11 1122444445 4458899999999998
Q ss_pred CeEEEC--hhhhccc-cccccH-------HHHHH-cCC-cEEEcCCCC
Q 019100 298 VKVSHC--PASAMRM-LGFAPI-------KEMLH-ADI-CVSLGTDGA 333 (346)
Q Consensus 298 ~~v~~~--p~~~~~l-~~~~~~-------~~~~~-~Gv-~v~~GTD~~ 333 (346)
-.+-++ |..-..- ...+.+ ..+.+ .|+ .|+||||-.
T Consensus 216 GvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~ 263 (313)
T COG2355 216 GVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSDFD 263 (313)
T ss_pred CEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEeccccc
Confidence 554333 3211100 012233 33333 344 599999954
No 212
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.91 E-value=3.7e+02 Score=24.59 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=67.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHh---cCCC---CCHHHHHHHcCCCCCCeeEEEeccCChhhHH
Q 019100 218 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT---RKVD---HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIG 291 (346)
Q Consensus 218 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~---~g~~---~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~ 291 (346)
....++.++.+.+.+++.|+++..-+.+.. ..+.+.+. +..+ .+-..+|+..+-.+..+++.-+..++.+|+.
T Consensus 147 ~G~g~~gl~~L~~~~~e~Gl~~~tev~d~~-~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~ 225 (352)
T PRK13396 147 QGHGESALELLAAAREATGLGIITEVMDAA-DLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWL 225 (352)
T ss_pred CCchHHHHHHHHHHHHHcCCcEEEeeCCHH-HHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHH
Confidence 445688888888888899999988876543 44444332 1111 1135678888888888888889988888854
Q ss_pred H----HHhcCC-eEEEChh---hh--c--cc-cccccHHHHHHc-CCcEEE
Q 019100 292 L----LSRAGV-KVSHCPA---SA--M--RM-LGFAPIKEMLHA-DICVSL 328 (346)
Q Consensus 292 ~----l~~~g~-~v~~~p~---~~--~--~l-~~~~~~~~~~~~-Gv~v~~ 328 (346)
. +.+.|. .++.|-. +. . +. .++..+..+.+. +++|.+
T Consensus 226 ~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~ 276 (352)
T PRK13396 226 MAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMI 276 (352)
T ss_pred HHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEE
Confidence 3 433443 4666654 11 1 11 233445555554 666643
No 213
>PRK01060 endonuclease IV; Provisional
Probab=33.76 E-value=3.2e+02 Score=23.69 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCCe-EEEEec
Q 019100 224 LLLETRDMAREFKTG-IHMHVA 244 (346)
Q Consensus 224 ~l~~~~~~a~~~g~~-v~~H~~ 244 (346)
.+++.++.|++.|.+ +.+|..
T Consensus 90 ~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 90 FLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC
Confidence 455666666666665 445543
No 214
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=32.29 E-value=3.3e+02 Score=23.45 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEe
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHV 243 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~ 243 (346)
..+++.++++.+.++++|+++.+|.
T Consensus 41 ~~~~~~~~~l~~~~~~~gl~ls~h~ 65 (273)
T smart00518 41 RLSEETAEKFKEALKENNIDVSVHA 65 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3567778888888888888888885
No 215
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=4e+02 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=20.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEe
Q 019100 218 MNATDRLLLETRDMAREFKTGIHMHV 243 (346)
Q Consensus 218 ~~~~~~~l~~~~~~a~~~g~~v~~H~ 243 (346)
..++.+.++++++.|+++|.++.+-+
T Consensus 44 ~nfs~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 44 LNFSVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 35678888899999999988766554
No 216
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=32.02 E-value=2.8e+02 Score=22.56 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=18.3
Q ss_pred eeEEEeccCChhhHHHHHhcCCeEEEChh
Q 019100 277 LLSAHTVWVNHTEIGLLSRAGVKVSHCPA 305 (346)
Q Consensus 277 ~~~~H~~~~~~~~i~~l~~~g~~v~~~p~ 305 (346)
..+.-+.-++.++++.+.+.|...++.|.
T Consensus 56 ~~iGag~v~~~~~~~~a~~~Ga~~i~~p~ 84 (190)
T cd00452 56 ALIGAGTVLTPEQADAAIAAGAQFIVSPG 84 (190)
T ss_pred CEEEEEeCCCHHHHHHHHHcCCCEEEcCC
Confidence 34455555666777777777776666664
No 217
>PRK08185 hypothetical protein; Provisional
Probab=30.82 E-value=3.8e+02 Score=23.69 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=58.2
Q ss_pred EEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhh-
Q 019100 211 WFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE- 289 (346)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~- 289 (346)
.+++........+....+...|++..++|.+|+..... .+.+.. .-+.|+ ..+..-+.+++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~-~e~i~~-----------ai~~Gf---~SVM~D~S~l~~eeN 107 (283)
T PRK08185 43 AIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHGAT-IEDVMR-----------AIRCGF---TSVMIDGSLLPYEEN 107 (283)
T ss_pred EeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHH-----------HHHcCC---CEEEEeCCCCCHHHH
Confidence 34443333334455556667888899999999977653 332221 223444 45666777777655
Q ss_pred -------HHHHHhcCCeEEECh----hhhcc---------ccccccHHHHHHc-CCc---EEEcCCCCCC
Q 019100 290 -------IGLLSRAGVKVSHCP----ASAMR---------MLGFAPIKEMLHA-DIC---VSLGTDGAPS 335 (346)
Q Consensus 290 -------i~~l~~~g~~v~~~p----~~~~~---------l~~~~~~~~~~~~-Gv~---v~~GTD~~~~ 335 (346)
+++....|+.+..-. ..+.. +.......++.+. |+. +++||=++..
T Consensus 108 i~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y 177 (283)
T PRK08185 108 VALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIY 177 (283)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCc
Confidence 233344566653222 10000 0112223566655 774 6777776653
No 218
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.49 E-value=60 Score=18.89 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=12.6
Q ss_pred eEEEeCCEEEEeccCh
Q 019100 42 GVFVVQDRIKAIGQSA 57 (346)
Q Consensus 42 ~v~V~~g~I~~v~~~~ 57 (346)
.|.|.||+|+.|...+
T Consensus 19 ~iiiqdG~vvQIe~~E 34 (38)
T PF10055_consen 19 TIIIQDGRVVQIEKTE 34 (38)
T ss_pred EEEEECCEEEEEEhhh
Confidence 4677999999987754
No 219
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=30.48 E-value=4.2e+02 Score=24.17 Aligned_cols=73 Identities=7% Similarity=0.000 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCeEEEEecCChh----hHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhh--------HHH
Q 019100 225 LLETRDMAREFKTGIHMHVAEIPY----ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE--------IGL 292 (346)
Q Consensus 225 l~~~~~~a~~~g~~v~~H~~~~~~----~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~--------i~~ 292 (346)
...+...|++.+++|.+|+.+... ..+.+.++ ..+...+....|-..+..-+++++.++ ++.
T Consensus 76 ~~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a------~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~ 149 (345)
T cd00946 76 AHHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA------DEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLER 149 (345)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH------HHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHH
Confidence 334555777889999999977653 13333221 233344444445566667777777544 355
Q ss_pred HHhcCCeEEEC
Q 019100 293 LSRAGVKVSHC 303 (346)
Q Consensus 293 l~~~g~~v~~~ 303 (346)
+...|+.|..-
T Consensus 150 Ah~~gvsVEaE 160 (345)
T cd00946 150 MAKINMWLEME 160 (345)
T ss_pred HHHcCCEEEEE
Confidence 55567776543
No 220
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=29.92 E-value=1.8e+02 Score=25.96 Aligned_cols=85 Identities=15% Similarity=0.044 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHH-H---hcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhhHHHHH
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM-D---TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLS 294 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~-~---~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~i~~l~ 294 (346)
-.+++++.++-.+|+++|+++.+.-.-...--.-.. + .|+...=..--|.+.|+.|.|+-+.= ..++-+..+.
T Consensus 195 VlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiI---ane~viqait 271 (417)
T COG3977 195 VLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIII---ANEKVIQAIT 271 (417)
T ss_pred cccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhhcCCCCcceeEEE---ccHHHHHHHH
Confidence 457899999999999999999887432221000000 0 00000000112445566555532221 2345577777
Q ss_pred hcCCeEEEChhh
Q 019100 295 RAGVKVSHCPAS 306 (346)
Q Consensus 295 ~~g~~v~~~p~~ 306 (346)
..+..++..|..
T Consensus 272 nmn~iisLap~~ 283 (417)
T COG3977 272 NMNGIISLAPGR 283 (417)
T ss_pred hccceeeecCCC
Confidence 777777777743
No 221
>PRK08044 allantoinase; Provisional
Probab=29.92 E-value=1.3e+02 Score=28.42 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHcCCeEE-EEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeE---EEeccCChhhHHHHHhc
Q 019100 221 TDRLLLETRDMAREFKTGIH-MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLS---AHTVWVNHTEIGLLSRA 296 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~-~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~---~H~~~~~~~~i~~l~~~ 296 (346)
..+.+.+++.+|++.|.+++ +|+. +....+.+. ..++.| .++.+ .|...++++++.. .
T Consensus 220 E~~~v~r~~~lA~~~g~~vhi~HiS-t~~~~~~i~-----------~ak~~G---~~it~e~~~h~L~l~~~~~~~---~ 281 (449)
T PRK08044 220 EVEAIRRVLYLAKVAGCRLHVCHIS-SPEGVEEVT-----------RARQEG---QDVTCESCPHYFVLDTDQFEE---I 281 (449)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCC-CHHHHHHHH-----------HHHHCC---CCEEEEcChhhhcccHHHhhC---C
Confidence 34567889999999999985 4654 333333222 122333 23332 5777777776432 3
Q ss_pred CCeEEECh
Q 019100 297 GVKVSHCP 304 (346)
Q Consensus 297 g~~v~~~p 304 (346)
|....++|
T Consensus 282 ~~~~k~~P 289 (449)
T PRK08044 282 GTLAKCSP 289 (449)
T ss_pred CCcEEEcC
Confidence 55555566
No 222
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=29.25 E-value=3.5e+02 Score=22.80 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEec--------cCChhhHH-
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV--------WVNHTEIG- 291 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~--------~~~~~~i~- 291 (346)
+.+.++.+.+.|+++|..+.+-........+ ..+++++ ++++.++.|-. ..+.+++.
T Consensus 91 ~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~-----------~~~~l~~---~gvd~~~~H~g~D~q~~G~~~~~~~l~~ 156 (217)
T COG0269 91 DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQ-----------RAKWLKE---LGVDQVILHRGRDAQAAGKSWGEDDLEK 156 (217)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeecCCCHHH-----------HHHHHHH---hCCCEEEEEecccHhhcCCCccHHHHHH
Confidence 4778999999999999999999876654222 2233444 45677778843 12223333
Q ss_pred --HHHhcCCeEEEChhhhccccccccHHHHHHcCCcEE
Q 019100 292 --LLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVS 327 (346)
Q Consensus 292 --~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~Gv~v~ 327 (346)
++.+.|..+.+.=-. ....++.+.+.|+.+.
T Consensus 157 ik~~~~~g~~vAVaGGI-----~~~~i~~~~~~~~~iv 189 (217)
T COG0269 157 IKKLSDLGAKVAVAGGI-----TPEDIPLFKGIGADIV 189 (217)
T ss_pred HHHhhccCceEEEecCC-----CHHHHHHHhcCCCCEE
Confidence 344444554433211 1245777777776543
No 223
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=28.90 E-value=6.3e+02 Score=25.66 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCC-------------CCHHHHHHHcCCCCCC-eeEEEecc
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD-------------HGTVTFLDKIEFLQNN-LLSAHTVW 284 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~-------------~~~~~~l~~~g~l~~~-~~~~H~~~ 284 (346)
..++++|+++.+.|+++|+.+.+-++. ..+.+...+. |.. -......+-...+-.. +.+.-.--
T Consensus 143 ~L~~~~l~~l~~~a~~lGme~LvEvh~-~~el~~a~~~-ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI 220 (695)
T PRK13802 143 ALDDAQLKHLLDLAHELGMTVLVETHT-REEIERAIAA-GAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGV 220 (695)
T ss_pred hcCHHHHHHHHHHHHHcCCeEEEEeCC-HHHHHHHHhC-CCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCC
Confidence 346789999999999999999988864 4445444332 100 0011111112222222 22332333
Q ss_pred CChhhHHHHHhcCCeEEEChhhhccc-cccccHHHHHHcCCcEEEcCCCCCCC
Q 019100 285 VNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSN 336 (346)
Q Consensus 285 ~~~~~i~~l~~~g~~v~~~p~~~~~l-~~~~~~~~~~~~Gv~v~~GTD~~~~~ 336 (346)
-+++|+.++++.|...+..-.+-++- .....+++|..++-++-.+-|.+.+.
T Consensus 221 ~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~~~~~~~~~~~~~~~ 273 (695)
T PRK13802 221 FGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKAGARVKASETTPLSE 273 (695)
T ss_pred CCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhccccccccCCCCccc
Confidence 46789999999987776666554432 22345788888888888776666533
No 224
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=28.81 E-value=2.6e+02 Score=24.60 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEe
Q 019100 223 RLLLETRDMAREFKTGIHMHV 243 (346)
Q Consensus 223 ~~l~~~~~~a~~~g~~v~~H~ 243 (346)
+.++++-+.++++|+++.+|-
T Consensus 87 ~~l~~iG~~~~~~~iRls~HP 107 (275)
T PF03851_consen 87 EELAEIGDLAKENGIRLSMHP 107 (275)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred HHHHHHHHHHHHcCCeEEecC
Confidence 445566666666666666663
No 225
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=28.40 E-value=4.7e+02 Score=24.06 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=13.5
Q ss_pred ccccHHHHHHcCCcEEEc
Q 019100 312 GFAPIKEMLHADICVSLG 329 (346)
Q Consensus 312 ~~~~~~~~~~~Gv~v~~G 329 (346)
|..|+.++++.|..|.|.
T Consensus 149 Ga~pI~~AL~~GADIVI~ 166 (362)
T PF07287_consen 149 GAEPIVEALEAGADIVIT 166 (362)
T ss_pred ChHHHHHHHHcCCCEEEe
Confidence 556788888888877775
No 226
>PRK09248 putative hydrolase; Validated
Probab=27.64 E-value=78 Score=27.08 Aligned_cols=48 Identities=19% Similarity=0.052 Sum_probs=32.0
Q ss_pred hhHHHHHhcCCeEEEChhhhc--ccc----ccccHHHHHHcCCcEEEcCCCCCC
Q 019100 288 TEIGLLSRAGVKVSHCPASAM--RML----GFAPIKEMLHADICVSLGTDGAPS 335 (346)
Q Consensus 288 ~~i~~l~~~g~~v~~~p~~~~--~l~----~~~~~~~~~~~Gv~v~~GTD~~~~ 335 (346)
+-+..+++.|+.+.+.-.+.. +.. ....++.+.+.|+++++|||....
T Consensus 144 ~~~~~~~~~g~~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~~gSDAH~~ 197 (246)
T PRK09248 144 AVVKAAKEHNVALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVALGSDAHIA 197 (246)
T ss_pred HHHHHHHHhCCEEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEEEeCCCCCh
Confidence 336778888988766543321 111 123467889999999999998753
No 227
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=27.43 E-value=2.6e+02 Score=20.65 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCCh
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIP 247 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 247 (346)
..+++.++...+...+...+|.+||....
T Consensus 69 ~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 69 AITEEDVEAFADALESLPKPVLAHCRSGT 97 (110)
T ss_dssp T--HHHHHHHHHHHHTTTTSEEEE-SCSH
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCCh
Confidence 34677777777777777789999997554
No 228
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=27.14 E-value=2e+02 Score=28.25 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=34.3
Q ss_pred eeEEEeccCChhhHHHHHhcCCeEEEChhhhccccccccHHHHHHcCCcEEE
Q 019100 277 LLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSL 328 (346)
Q Consensus 277 ~~~~H~~~~~~~~i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~Gv~v~~ 328 (346)
.+..|+..++.+++..+++.|+...+||.+. .-..+-++.|..+.+
T Consensus 177 ~I~gHap~l~~~eL~~~~~aGi~~dHe~~s~------~ea~e~~~~Gm~~~i 222 (552)
T TIGR01178 177 VIDGHCPGLSGKLLNKYISAGISNDHESTSI------EEAREKLRLGMKLMI 222 (552)
T ss_pred EEEecCCCCCHHHHHHHHHcCCCCCcCcCCH------HHHHHHHHCCCEEEE
Confidence 4668999999999999999999999999774 233444455554433
No 229
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=26.60 E-value=5.1e+02 Score=26.87 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=29.7
Q ss_pred EeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhh
Q 019100 212 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (346)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 249 (346)
++.-|....++.+.+.+++.+++.|++|++--++....
T Consensus 576 vGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~T 613 (972)
T KOG0202|consen 576 VGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKET 613 (972)
T ss_pred EEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHH
Confidence 44445566678889999999999999999988776643
No 230
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=26.43 E-value=1.4e+02 Score=31.79 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=39.8
Q ss_pred EeecccccccCCcccccccccCCCChhHhhhhhccccccCCCchHHHHHHHHHHHHHHhcCceEee--ecCc-CCHHHHH
Q 019100 78 LLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA--EAGG-QHVSEMA 154 (346)
Q Consensus 78 v~PGfID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~--d~~~-~~~~~~~ 154 (346)
++|-|+|.|+|-..+.+.| ..++++.. ..+...|...+. |+.. .......
T Consensus 1 ~~~~fv~LHvHT~ySlLdg--------------------~~~~~elv-------~~A~~~G~~avAiTDh~~l~g~~~f~ 53 (1046)
T PRK05672 1 MLPPYAELHCHSNFSFLDG--------------------ASHPEELV-------ERAARLGLRALAITDECGLAGVVRAA 53 (1046)
T ss_pred CCCceeeccccccCccccc--------------------CCCHHHHH-------HHHHHcCCCEEEEEeCCcchhHHHHH
Confidence 3677999999976543222 22233322 345566776554 4432 1234556
Q ss_pred HHHHHhCCeEEEecccc
Q 019100 155 KAVELLGLRACLVQSTM 171 (346)
Q Consensus 155 ~~~~~~g~~~~~~~~~~ 171 (346)
+.+...|++.+.+.++.
T Consensus 54 ~~~~~~gIkpI~G~Ei~ 70 (1046)
T PRK05672 54 EAAKELGLRLVIGAELS 70 (1046)
T ss_pred HHHHHCCCEEEEEEEEE
Confidence 67778889888887654
No 231
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=25.98 E-value=3.1e+02 Score=21.10 Aligned_cols=72 Identities=11% Similarity=-0.101 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEecc-CC----hhhHHHHHhcCCeEE
Q 019100 227 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW-VN----HTEIGLLSRAGVKVS 301 (346)
Q Consensus 227 ~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~-~~----~~~i~~l~~~g~~v~ 301 (346)
++.+.+.+.+..+..=..-.......+.+ ..+.+++.+..+..++ .-|.- .. .++.+++++.|+..+
T Consensus 45 ~i~~~a~~~~~d~V~lS~~~~~~~~~~~~-------~~~~L~~~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~v 116 (137)
T PRK02261 45 EFIDAAIETDADAILVSSLYGHGEIDCRG-------LREKCIEAGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRV 116 (137)
T ss_pred HHHHHHHHcCCCEEEEcCccccCHHHHHH-------HHHHHHhcCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEE
Confidence 34445556665544433222222222322 4555666655444433 23322 12 344678888898777
Q ss_pred EChhh
Q 019100 302 HCPAS 306 (346)
Q Consensus 302 ~~p~~ 306 (346)
+.|.+
T Consensus 117 f~~~~ 121 (137)
T PRK02261 117 FPPGT 121 (137)
T ss_pred ECcCC
Confidence 77754
No 232
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=25.92 E-value=2.5e+02 Score=23.66 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh--hhHHHHHhc
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--TEIGLLSRA 296 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~--~~i~~l~~~ 296 (346)
++.++.++.+.+.. ..+++.+|+--.. +.++++.+--.|...+..|.-.... +.+..+++.
T Consensus 43 tfg~~~i~~i~~~~--~~~~~dvHLMv~~---------------p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~ 105 (220)
T PRK08883 43 TFGAPICKALRDYG--ITAPIDVHLMVKP---------------VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEH 105 (220)
T ss_pred ccCHHHHHHHHHhC--CCCCEEEEeccCC---------------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHc
Confidence 44676666544320 2588999973222 4444444444456778788775432 457788888
Q ss_pred CC--eEEEChh
Q 019100 297 GV--KVSHCPA 305 (346)
Q Consensus 297 g~--~v~~~p~ 305 (346)
|. .++.+|.
T Consensus 106 g~k~GlalnP~ 116 (220)
T PRK08883 106 GCQAGVVLNPA 116 (220)
T ss_pred CCcEEEEeCCC
Confidence 84 4566664
No 233
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.81 E-value=4.7e+02 Score=23.13 Aligned_cols=76 Identities=9% Similarity=0.053 Sum_probs=41.6
Q ss_pred EEeecccccCCHHHHHH-HHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhh
Q 019100 211 WFGIRQIMNATDRLLLE-TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE 289 (346)
Q Consensus 211 ~~~~~~~~~~~~~~l~~-~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~ 289 (346)
.+++........+.+.. +...|++..+||.+|...... .+.+.. .-+.|+ ..+..-+++++.++
T Consensus 48 q~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~-~e~i~~-----------ai~~Gf---tSVMiDgS~lp~ee 112 (284)
T PRK12737 48 AGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHED-LDDIKK-----------KVRAGI---RSVMIDGSHLSFEE 112 (284)
T ss_pred EcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHH-----------HHHcCC---CeEEecCCCCCHHH
Confidence 34443333344444444 556777889999999977653 332221 123444 44556666666433
Q ss_pred --------HHHHHhcCCeEE
Q 019100 290 --------IGLLSRAGVKVS 301 (346)
Q Consensus 290 --------i~~l~~~g~~v~ 301 (346)
++...+.|+.|.
T Consensus 113 Ni~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 113 NIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HHHHHHHHHHHHHHcCCEEE
Confidence 344444566654
No 234
>PRK10490 sensor protein KdpD; Provisional
Probab=25.72 E-value=5.9e+02 Score=26.75 Aligned_cols=112 Identities=17% Similarity=0.198 Sum_probs=64.4
Q ss_pred CCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEecc
Q 019100 205 DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW 284 (346)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~ 284 (346)
-|+++++++...-..-+-.-|.++.+ .++.|..|.+=..|+-..-+ ....++.+..+-++.+--++..
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~-~~~~g~dvv~g~~e~h~r~~-----------t~~~~~~l~~~p~~~~~~~~~~ 89 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQR-LRAQGLDVLVGVVETHGRKE-----------TAALLEGLTVLPPKRIHHRGRH 89 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHH-HHhCCCcEEEEEeeCCCCHH-----------HHHHhcCCCcCCCeeEeECCee
Confidence 58899988876444555666665444 55689999888777543211 2233344444444444345666
Q ss_pred CChhhHHHHHhcCCeEEECh---hhhccc----cccccHHHHHHcCCcEEE
Q 019100 285 VNHTEIGLLSRAGVKVSHCP---ASAMRM----LGFAPIKEMLHADICVSL 328 (346)
Q Consensus 285 ~~~~~i~~l~~~g~~v~~~p---~~~~~l----~~~~~~~~~~~~Gv~v~~ 328 (346)
+.+-|++.+-++.=.++.-. .+|..- .....+.+++++||.|.-
T Consensus 90 ~~e~d~~~~l~~~p~~~lvdelah~n~~g~~~~kr~qdv~~ll~~gi~v~t 140 (895)
T PRK10490 90 ISEFDLDAALARRPALILMDELAHSNAPGSRHPKRWQDVEELLEAGIDVFT 140 (895)
T ss_pred ccccCHHHHHhCCCCEEEEeccccCCCCCCCCCccHhhHHHHHHCCCeEEe
Confidence 67767766665542222222 122111 234688999999998754
No 235
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=25.61 E-value=4.4e+02 Score=22.73 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=13.7
Q ss_pred EEeecccccccCCcccc
Q 019100 77 ILLPGFVNTHVHTSQQL 93 (346)
Q Consensus 77 ~v~PGfID~H~H~~~~~ 93 (346)
+-+|+.-|.|+|+....
T Consensus 5 l~i~~~~DmHvHlR~g~ 21 (344)
T KOG2902|consen 5 LTITQPDDMHVHLRDGD 21 (344)
T ss_pred EecCCccceeEEeccCC
Confidence 45789999999998744
No 236
>PRK06256 biotin synthase; Validated
Probab=25.49 E-value=5e+02 Score=23.32 Aligned_cols=11 Identities=18% Similarity=0.290 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 019100 224 LLLETRDMARE 234 (346)
Q Consensus 224 ~l~~~~~~a~~ 234 (346)
.+.++++..++
T Consensus 127 ~~~e~i~~i~~ 137 (336)
T PRK06256 127 QVVEAVKAIKE 137 (336)
T ss_pred HHHHHHHHHHh
Confidence 34344444444
No 237
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=25.36 E-value=40 Score=25.88 Aligned_cols=17 Identities=41% Similarity=0.958 Sum_probs=15.4
Q ss_pred CCEEeecccccccCCcc
Q 019100 75 SQILLPGFVNTHVHTSQ 91 (346)
Q Consensus 75 g~~v~PGfID~H~H~~~ 91 (346)
|++++|||||.|+|+..
T Consensus 1 ~kli~~g~vd~hVhlre 17 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLRE 17 (142)
T ss_pred Cceeehhhhhhhhhhhc
Confidence 68999999999999865
No 238
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=25.04 E-value=2.6e+02 Score=25.68 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=9.4
Q ss_pred ccHHHHHHcCCc-EEE
Q 019100 314 APIKEMLHADIC-VSL 328 (346)
Q Consensus 314 ~~~~~~~~~Gv~-v~~ 328 (346)
..++++.++|+. |++
T Consensus 205 ~~i~~a~~aG~~~v~~ 220 (366)
T TIGR02351 205 NTPERAAKAGMRKIGI 220 (366)
T ss_pred HHHHHHHHcCCCeece
Confidence 356777777775 444
No 239
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=25.02 E-value=6.1e+02 Score=26.52 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEecc---CChhhHHHH-Hhc
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW---VNHTEIGLL-SRA 296 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~---~~~~~i~~l-~~~ 296 (346)
..+..+++.+.+++.|+++.+=-++..... ....++.|+...+.+ .+.. ++++++..+ .+.
T Consensus 516 ~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA-------------~aIA~~lGI~~~~v~--~g~~l~~~~~~el~~~~~~~ 580 (867)
T TIGR01524 516 PKESTKEAIAALFKNGINVKVLTGDNEIVT-------------ARICQEVGIDANDFL--LGADIEELSDEELARELRKY 580 (867)
T ss_pred CchhHHHHHHHHHHCCCEEEEEcCCCHHHH-------------HHHHHHcCCCCCCee--ecHhhhhCCHHHHHHHhhhC
Confidence 456677889999999999887766554322 233445666432221 2211 233333222 222
Q ss_pred CCeEEEChhhh----------c----cc-cccccHHHHHHcCCcEEEcC
Q 019100 297 GVKVSHCPASA----------M----RM-LGFAPIKEMLHADICVSLGT 330 (346)
Q Consensus 297 g~~v~~~p~~~----------~----~l-~~~~~~~~~~~~Gv~v~~GT 330 (346)
.+..-++|..- . .. .|..+.+.|.++.|-|++|+
T Consensus 581 ~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg~ 629 (867)
T TIGR01524 581 HIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVDT 629 (867)
T ss_pred eEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeCC
Confidence 33334444210 0 11 56788899999999999873
No 240
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=24.82 E-value=3.7e+02 Score=23.99 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCe----EEEEecCC
Q 019100 222 DRLLLETRDMAREFKTG----IHMHVAEI 246 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~----v~~H~~~~ 246 (346)
-+.|..-++++...|.. +.+|.+..
T Consensus 129 i~~L~~~~~~~~~lG~~~~~~vViHpG~~ 157 (303)
T PRK02308 129 IKDLEYHAKLLDLMGIDDSSKINIHVGGA 157 (303)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCcc
Confidence 34455667777778877 77887653
No 241
>PRK08005 epimerase; Validated
Probab=24.82 E-value=3.2e+02 Score=22.90 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC--hhhHHHHHhc
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRA 296 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~--~~~i~~l~~~ 296 (346)
++.++.++.+.+. ...++.+|+--.. +.++++.+--.|...+..|.-... .+.++.+++.
T Consensus 44 tfG~~~i~~l~~~---t~~~~DvHLMv~~---------------P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~ 105 (210)
T PRK08005 44 TFGMKTIQAVAQQ---TRHPLSFHLMVSS---------------PQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAI 105 (210)
T ss_pred ccCHHHHHHHHhc---CCCCeEEEeccCC---------------HHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHc
Confidence 3356656554432 3467777763221 333333333334466666765322 2446677777
Q ss_pred CC--eEEEChh
Q 019100 297 GV--KVSHCPA 305 (346)
Q Consensus 297 g~--~v~~~p~ 305 (346)
|. .++.+|.
T Consensus 106 G~k~GlAlnP~ 116 (210)
T PRK08005 106 GAKAGLALNPA 116 (210)
T ss_pred CCcEEEEECCC
Confidence 63 3455553
No 242
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.48 E-value=3.5e+02 Score=23.24 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCC--------CCHHHHHHHcCCCCCCeeEEEeccCChhh-
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD--------HGTVTFLDKIEFLQNNLLSAHTVWVNHTE- 289 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~--------~~~~~~l~~~g~l~~~~~~~H~~~~~~~~- 289 (346)
.++.++..++.+.|+++|+.+..-..+. ...+.+. .++.. -+-..+|+...-.+.++++.=|. .+-+|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~-~s~d~l~-~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~-stl~EI 128 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDE-ESVDFLE-ELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM-STLEEI 128 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SH-HHHHHHH-HHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT---HHHH
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCH-HHHHHHH-HcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC-CCHHHH
Confidence 3468889999999999999888877543 3344442 22211 11234556555566566654443 33333
Q ss_pred ---HHHHHhc---CCeEEEChh
Q 019100 290 ---IGLLSRA---GVKVSHCPA 305 (346)
Q Consensus 290 ---i~~l~~~---g~~v~~~p~ 305 (346)
+..+++. .+.+-+|..
T Consensus 129 ~~Av~~~~~~~~~~l~llHC~s 150 (241)
T PF03102_consen 129 ERAVEVLREAGNEDLVLLHCVS 150 (241)
T ss_dssp HHHHHHHHHHCT--EEEEEE-S
T ss_pred HHHHHHHHhcCCCCEEEEecCC
Confidence 3445232 355555653
No 243
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=24.26 E-value=7.2e+02 Score=24.74 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=54.3
Q ss_pred HHHHHHhcCceEeeecCcC-CH---HHHHHHHHHhCCeEEEecccccCCCCCCcccccCChHHHHHHHHHHHHHHcCCCC
Q 019100 130 CGIELIHSGVTCFAEAGGQ-HV---SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (346)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~-~~---~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (346)
.++.+.++|+..++-+... .. +..++.+.+.|......-.+.. ++. -..+..++-+.++.+ .+.
T Consensus 101 ~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-----sp~---~t~e~~~~~ak~l~~----~Ga 168 (596)
T PRK14042 101 FVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT-----SPV---HTLDNFLELGKKLAE----MGC 168 (596)
T ss_pred HHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC-----CCC---CCHHHHHHHHHHHHH----cCC
Confidence 4567889999998876422 22 3345566677776544322221 111 122222222333222 222
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHH-cCCeEEEEecCChh
Q 019100 206 GRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIPY 248 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 248 (346)
..+ .+.. ..-..+|+...+++...++ .++++.+|++.+..
T Consensus 169 d~I--~IkD-taG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~G 209 (596)
T PRK14042 169 DSI--AIKD-MAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSG 209 (596)
T ss_pred CEE--EeCC-cccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCC
Confidence 222 1211 1223467777777777664 57999999987653
No 244
>PRK07627 dihydroorotase; Provisional
Probab=23.84 E-value=2.1e+02 Score=26.89 Aligned_cols=31 Identities=10% Similarity=0.019 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCChhhHHH
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 252 (346)
.+.+.++.++|++.+.++++-...+...++.
T Consensus 212 ~~av~r~~~la~~~~~~~hi~HvSs~~~~~~ 242 (425)
T PRK07627 212 TIALHTIFELMRVTGARVHLARLSSAAGVAL 242 (425)
T ss_pred HHHHHHHHHHHHHHCCcEEEEeCCCHHHHHH
Confidence 3467788999999999988754455554443
No 245
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.80 E-value=5.1e+02 Score=22.89 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=42.9
Q ss_pred EEeecccccCCHH-HHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhh
Q 019100 211 WFGIRQIMNATDR-LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE 289 (346)
Q Consensus 211 ~~~~~~~~~~~~~-~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~ 289 (346)
.+++........+ ....+...|++..+||.+|+..... .+.+.. .-+.|+ ..+..-+++++.++
T Consensus 48 q~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~-~e~i~~-----------Ai~~Gf---tSVM~DgS~l~~ee 112 (284)
T PRK09195 48 AGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEK-FDDIAQ-----------KVRSGV---RSVMIDGSHLPFAQ 112 (284)
T ss_pred EcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHH-----------HHHcCC---CEEEeCCCCCCHHH
Confidence 3444333333433 3444556788899999999977653 343322 224454 44556677766543
Q ss_pred --------HHHHHhcCCeEEE
Q 019100 290 --------IGLLSRAGVKVSH 302 (346)
Q Consensus 290 --------i~~l~~~g~~v~~ 302 (346)
++.....|+.|..
T Consensus 113 Ni~~T~~vv~~Ah~~gv~VEa 133 (284)
T PRK09195 113 NISLVKEVVDFCHRFDVSVEA 133 (284)
T ss_pred HHHHHHHHHHHHHHcCCEEEE
Confidence 3444455766543
No 246
>PRK07369 dihydroorotase; Provisional
Probab=23.48 E-value=1.7e+02 Score=27.40 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCChhhHHHH
Q 019100 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~ 253 (346)
.+.+.+++++|+..|.++++-...+...++.+
T Consensus 213 ~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i 244 (418)
T PRK07369 213 TTALAALLELVAAIGTPVHLMRISTARSVELI 244 (418)
T ss_pred HHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHH
Confidence 44577889999999999888555566555433
No 247
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.23 E-value=4.7e+02 Score=22.42 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEe-ccCChhh----HHHHH
Q 019100 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHT-VWVNHTE----IGLLS 294 (346)
Q Consensus 220 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~-~~~~~~~----i~~l~ 294 (346)
.+++.+++..++|+++|+.+..= ++-.+..... +....+++.++++|+- ..-+.-+ ..++.++ |++++
T Consensus 38 ~~~~~l~eki~la~~~~V~v~~G--Gtl~E~~~~q---~~~~~Yl~~~k~lGf~--~IEiS~G~~~i~~~~~~rlI~~~~ 110 (237)
T TIGR03849 38 IDRDIVKEKIEMYKDYGIKVYPG--GTLFEIAHSK---GKFDEYLNECDELGFE--AVEISDGSMEISLEERCNLIERAK 110 (237)
T ss_pred ccHHHHHHHHHHHHHcCCeEeCC--ccHHHHHHHh---hhHHHHHHHHHHcCCC--EEEEcCCccCCCHHHHHHHHHHHH
Confidence 35678999999999999886543 4443333222 2211245566777773 2222233 3355555 56666
Q ss_pred hcCCeEE
Q 019100 295 RAGVKVS 301 (346)
Q Consensus 295 ~~g~~v~ 301 (346)
+.|..+.
T Consensus 111 ~~g~~v~ 117 (237)
T TIGR03849 111 DNGFMVL 117 (237)
T ss_pred hCCCeEe
Confidence 6776654
No 248
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.21 E-value=3.6e+02 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEec
Q 019100 223 RLLLETRDMAREFKTGIHMHVA 244 (346)
Q Consensus 223 ~~l~~~~~~a~~~g~~v~~H~~ 244 (346)
+.++++-+.|+++|+++.+|..
T Consensus 94 ~~l~~iG~~a~~~~iRLS~Hp~ 115 (312)
T TIGR00629 94 KELREIGELAKTHQHRLTFHPG 115 (312)
T ss_pred HHHHHHHHHHHHcCeEEEECCC
Confidence 4567777888888888888853
No 249
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.20 E-value=1.6e+02 Score=24.53 Aligned_cols=70 Identities=11% Similarity=0.242 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh--hhHHHHHhc
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--TEIGLLSRA 296 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~--~~i~~l~~~ 296 (346)
++.++.++++.+. ..+++.+|+--.. +.++++.+...+...+..|.-.... +.+..+++.
T Consensus 43 ~~g~~~i~~i~~~---~~~~~DvHLMv~~---------------P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~ 104 (201)
T PF00834_consen 43 TFGPDIIKAIRKI---TDLPLDVHLMVEN---------------PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEA 104 (201)
T ss_dssp -B-HHHHHHHHTT---SSSEEEEEEESSS---------------GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHT
T ss_pred cCCHHHHHHHhhc---CCCcEEEEeeecc---------------HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHh
Confidence 3457766654443 5688999973222 2223333333344677788775542 458888888
Q ss_pred CCe--EEEChhh
Q 019100 297 GVK--VSHCPAS 306 (346)
Q Consensus 297 g~~--v~~~p~~ 306 (346)
|.. ++.+|.+
T Consensus 105 g~k~GialnP~T 116 (201)
T PF00834_consen 105 GIKAGIALNPET 116 (201)
T ss_dssp TSEEEEEE-TTS
T ss_pred CCCEEEEEECCC
Confidence 854 5677754
No 250
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=22.18 E-value=2.4e+02 Score=19.30 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=22.5
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEec
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIG 54 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~ 54 (346)
.+.++|+.++..++ ...+-+.+.|.+..|..|.
T Consensus 44 Nl~L~~~~~~~~~~--~~~~~~~v~IRG~nI~yI~ 76 (78)
T cd01733 44 NIRLAKVTIIDRNG--KQVQVEEIMVTGRNIRYVH 76 (78)
T ss_pred eeEEEEEEEEcCCC--ceeECCcEEEECCEEEEEE
Confidence 57788888775433 2224578888888888764
No 251
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=22.06 E-value=2.3e+02 Score=19.47 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=26.1
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccCh
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSA 57 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~~ 57 (346)
.+.++|+.+...++......-..+.|++..|..|.-..
T Consensus 36 Ni~L~n~~~~~~~~~~~~~~~~~v~IRG~~I~~I~lp~ 73 (81)
T cd01725 36 NIKLTNISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPA 73 (81)
T ss_pred ccEEEEEEEEcCCCcccccccCeEEEECCEEEEEEeCh
Confidence 57889988775443222223368999999999998643
No 252
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=21.44 E-value=5e+02 Score=23.02 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHHcCCeEEEEe--cCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEec--cCChhhHHHHHhc--CCeEEE
Q 019100 229 RDMAREFKTGIHMHV--AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV--WVNHTEIGLLSRA--GVKVSH 302 (346)
Q Consensus 229 ~~~a~~~g~~v~~H~--~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~--~~~~~~i~~l~~~--g~~v~~ 302 (346)
.++|+++|+++..=- .++..+.+.. ..+.+++++. +.++.-+. -++++-++..+.. +++.+.
T Consensus 134 ~~~A~~~gIp~~~~~~~~~~~~~~~~~---------~~~~l~~~~~---Dlivlagym~il~~~~l~~~~~~iiNiHpSl 201 (289)
T PRK13010 134 QPLAVQHDIPFHHLPVTPDTKAQQEAQ---------ILDLIETSGA---ELVVLARYMQVLSDDLSRKLSGRAINIHHSF 201 (289)
T ss_pred HHHHHHcCCCEEEeCCCcccccchHHH---------HHHHHHHhCC---CEEEEehhhhhCCHHHHhhccCCceeeCccc
Confidence 478999999976522 1121111110 3444555443 55544433 3555555555443 233333
Q ss_pred ChhhhccccccccHHHHHHcCCcEEE
Q 019100 303 CPASAMRMLGFAPIKEMLHADICVSL 328 (346)
Q Consensus 303 ~p~~~~~l~~~~~~~~~~~~Gv~v~~ 328 (346)
-|.. .|..|++.++.+|++++=
T Consensus 202 LP~f----~G~~~~~~ai~~G~k~tG 223 (289)
T PRK13010 202 LPGF----KGARPYHQAHARGVKLIG 223 (289)
T ss_pred CCCC----CCCCHHHHHHHcCCCeEE
Confidence 3322 478899999999998643
No 253
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.07 E-value=5.1e+02 Score=21.90 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC---hhhHHHHHh
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---HTEIGLLSR 295 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~---~~~i~~l~~ 295 (346)
++.++.++++.. .-.+++.+|.-=.. +.++++.+--.|+..+..|.- .+ .+-+..+++
T Consensus 47 TfGp~~v~~l~~---~t~~p~DvHLMV~~---------------p~~~i~~fa~agad~It~H~E-~~~~~~r~i~~Ik~ 107 (220)
T COG0036 47 TFGPPVVKALRK---ITDLPLDVHLMVEN---------------PDRYIEAFAKAGADIITFHAE-ATEHIHRTIQLIKE 107 (220)
T ss_pred ccCHHHHHHHhh---cCCCceEEEEecCC---------------HHHHHHHHHHhCCCEEEEEec-cCcCHHHHHHHHHH
Confidence 345666665443 23588889973211 233333333334577778877 32 355888899
Q ss_pred cCC--eEEEChhh
Q 019100 296 AGV--KVSHCPAS 306 (346)
Q Consensus 296 ~g~--~v~~~p~~ 306 (346)
.|+ .++.+|.+
T Consensus 108 ~G~kaGv~lnP~T 120 (220)
T COG0036 108 LGVKAGLVLNPAT 120 (220)
T ss_pred cCCeEEEEECCCC
Confidence 884 46778854
No 254
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=20.88 E-value=2.2e+02 Score=26.57 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCChhhHHH
Q 019100 223 RLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (346)
Q Consensus 223 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 252 (346)
..+.++.++|++.+.++++-...+...++.
T Consensus 199 ~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~ 228 (411)
T TIGR00857 199 VAVARLLELAKHAGCPVHICHISTKESLEL 228 (411)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHH
Confidence 456778888999998887644445544443
No 255
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=20.81 E-value=6.9e+02 Score=23.29 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEe------ccCChhhHHHHH
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHT------VWVNHTEIGLLS 294 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~------~~~~~~~i~~l~ 294 (346)
+.+.+.++.+.++++|..+.+-...... +.+.++.+ ..+.+.++.|. ....-+.+..++
T Consensus 261 ~~~ti~~ai~~akk~GikvgVD~lnp~t--------------p~e~i~~l-~~~vD~Vllht~vdp~~~~~~~~kI~~ik 325 (391)
T PRK13307 261 PISTIEKAIHEAQKTGIYSILDMLNVED--------------PVKLLESL-KVKPDVVELHRGIDEEGTEHAWGNIKEIK 325 (391)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEcCCCC--------------HHHHHHHh-hCCCCEEEEccccCCCcccchHHHHHHHH
Confidence 4556777888888888777774333221 33444444 33456666663 111123456666
Q ss_pred hcC--CeEEEChhhhccccccccHHHHHHcCCc-EEEcCC
Q 019100 295 RAG--VKVSHCPASAMRMLGFAPIKEMLHADIC-VSLGTD 331 (346)
Q Consensus 295 ~~g--~~v~~~p~~~~~l~~~~~~~~~~~~Gv~-v~~GTD 331 (346)
+.+ +.+.+.+.. +...++.+.++|+. +.+|+-
T Consensus 326 k~~~~~~I~VdGGI-----~~eti~~l~~aGADivVVGsa 360 (391)
T PRK13307 326 KAGGKILVAVAGGV-----RVENVEEALKAGADILVVGRA 360 (391)
T ss_pred HhCCCCcEEEECCc-----CHHHHHHHHHcCCCEEEEeHH
Confidence 652 223322211 23568888999985 556654
No 256
>PRK14057 epimerase; Provisional
Probab=20.79 E-value=3.4e+02 Score=23.54 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC--hhhHHHHHhc
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRA 296 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~--~~~i~~l~~~ 296 (346)
++.++.++.+. + .+++.+|.--.. +.++++.+--.|...+..|.-... ...+..+++.
T Consensus 63 tfGp~~i~~i~----~-~~p~DvHLMV~~---------------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~ 122 (254)
T PRK14057 63 TVGPWAVGQLP----Q-TFIKDVHLMVAD---------------QWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQ 122 (254)
T ss_pred ccCHHHHHHhc----c-CCCeeEEeeeCC---------------HHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHc
Confidence 44566666552 2 577788863221 333333333334567777766322 2446777877
Q ss_pred C-----------CeEEEChhh
Q 019100 297 G-----------VKVSHCPAS 306 (346)
Q Consensus 297 g-----------~~v~~~p~~ 306 (346)
| ..++.+|.+
T Consensus 123 G~k~~~~~~~~kaGlAlnP~T 143 (254)
T PRK14057 123 TVPVIGGEMPVIRGISLCPAT 143 (254)
T ss_pred CCCcccccccceeEEEECCCC
Confidence 7 467777743
No 257
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=20.55 E-value=2.7e+02 Score=20.69 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=35.6
Q ss_pred CCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC-------hh--hHHHHHhcCCeEEEChhh
Q 019100 236 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-------HT--EIGLLSRAGVKVSHCPAS 306 (346)
Q Consensus 236 g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~-------~~--~i~~l~~~g~~v~~~p~~ 306 (346)
.+++..|+.+.+ ....++.. ...++...+-.... ++.|+..+. .. ++..|++.|+.+..|--|
T Consensus 3 ~~kVV~hv~~~~-k~~~~l~N------l~Nll~~~p~~~Ie-VV~~g~ai~~l~~~~~~~~~~~~~L~~~GV~~~aC~nS 74 (112)
T COG1416 3 RMKVVYHVDEES-KVNMVLGN------LTNLLEDDPSVEIE-VVAHGPAIAFLSEKANIAAVRVAELAQQGVEFVACGNS 74 (112)
T ss_pred ceEEEEEeccHH-HHHHHHHH------HHHHhcCCCCceEE-EEEeCchhHHhhhhccchhHHHHHHHHCCCEEEEecch
Confidence 367889998733 33333221 34444433221111 346765532 12 578899999999999754
No 258
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=20.53 E-value=4e+02 Score=22.68 Aligned_cols=69 Identities=13% Similarity=0.264 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCC---hhhHHHHHh
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---HTEIGLLSR 295 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~---~~~i~~l~~ 295 (346)
++.++.++.+.+. ..+++.+|+--.. +.++++.+--.|...+..|.-... ...+..+++
T Consensus 45 tfg~~~i~~ir~~---t~~~~DvHLMv~~---------------P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~ 106 (229)
T PRK09722 45 TLSPFFVSQVKKL---ASKPLDVHLMVTD---------------PQDYIDQLADAGADFITLHPETINGQAFRLIDEIRR 106 (229)
T ss_pred ccCHHHHHHHHhc---CCCCeEEEEEecC---------------HHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHH
Confidence 3456666554432 3577888863211 334444443345567777776432 245677777
Q ss_pred cCC--eEEEChh
Q 019100 296 AGV--KVSHCPA 305 (346)
Q Consensus 296 ~g~--~v~~~p~ 305 (346)
.|. .++.+|.
T Consensus 107 ~G~kaGlalnP~ 118 (229)
T PRK09722 107 AGMKVGLVLNPE 118 (229)
T ss_pred cCCCEEEEeCCC
Confidence 773 4566663
No 259
>PRK07360 FO synthase subunit 2; Reviewed
Probab=20.48 E-value=2.7e+02 Score=25.59 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEec
Q 019100 222 DRLLLETRDMAREFKTGIHMHVA 244 (346)
Q Consensus 222 ~~~l~~~~~~a~~~g~~v~~H~~ 244 (346)
.+.+.++++..++.-..+++|+.
T Consensus 124 ~e~~~~~i~~ik~~~~~i~i~a~ 146 (371)
T PRK07360 124 LEFYLEILEAIKEEFPDIHLHAF 146 (371)
T ss_pred HHHHHHHHHHHHHhCCCcceeeC
Confidence 55566677767664345667753
No 260
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=20.38 E-value=2.8e+02 Score=18.76 Aligned_cols=36 Identities=11% Similarity=0.300 Sum_probs=25.0
Q ss_pred eEEEEcCEEEecCCCCceeeeeeEEEeCCEEEEeccC
Q 019100 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQS 56 (346)
Q Consensus 20 ~~li~n~~i~~~d~~~~~~~~~~v~V~~g~I~~v~~~ 56 (346)
.+.++|+.....+++ +..+-..+.|.+..|..|.-.
T Consensus 36 Ni~L~~~~~~~~~g~-~~~~~~~v~IRG~~I~~i~~p 71 (76)
T cd01723 36 NIHLREVICTSKDGD-KFWKMPECYIRGNTIKYLRVP 71 (76)
T ss_pred ceEEEeEEEECCCCc-EeeeCCcEEEeCCEEEEEEcC
Confidence 478888887754433 222345899999999998754
No 261
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.20 E-value=5.5e+02 Score=23.49 Aligned_cols=29 Identities=17% Similarity=-0.027 Sum_probs=19.7
Q ss_pred ccccCCHHHHHHHHHHHHHcCCeEEEEecC
Q 019100 216 QIMNATDRLLLETRDMAREFKTGIHMHVAE 245 (346)
Q Consensus 216 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 245 (346)
|.+...++ +.++++.+++.|+.+.+--.+
T Consensus 71 GEPll~~~-~~~il~~~~~~g~~~~i~TNG 99 (378)
T PRK05301 71 GEPLLRKD-LEELVAHARELGLYTNLITSG 99 (378)
T ss_pred CccCCchh-HHHHHHHHHHcCCcEEEECCC
Confidence 55666665 557888899888776554443
No 262
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.18 E-value=3.5e+02 Score=23.05 Aligned_cols=67 Identities=7% Similarity=0.071 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCCh--hhHHHHHhc
Q 019100 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--TEIGLLSRA 296 (346)
Q Consensus 219 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~--~~i~~l~~~ 296 (346)
++.+..++.+. + .+++.+|+--.. +.++++.+--.|...+..|.-.... +.+..+++.
T Consensus 56 tfGp~~i~~i~----~-~~~~DvHLMv~~---------------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~ 115 (228)
T PRK08091 56 TVGAIAIKQFP----T-HCFKDVHLMVRD---------------QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQ 115 (228)
T ss_pred ccCHHHHHHhC----C-CCCEEEEeccCC---------------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHC
Confidence 34566665542 2 567888863221 3333333333345667777664322 456777887
Q ss_pred CC----eEEEChh
Q 019100 297 GV----KVSHCPA 305 (346)
Q Consensus 297 g~----~v~~~p~ 305 (346)
|. .++.+|.
T Consensus 116 g~~~kaGlalnP~ 128 (228)
T PRK08091 116 KTTVLIGLCLCPE 128 (228)
T ss_pred CCCceEEEEECCC
Confidence 75 4566664
No 263
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=20.17 E-value=6.5e+02 Score=26.65 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEecc----------------
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW---------------- 284 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~---------------- 284 (346)
..+..+++.+.+++.|+++.+=-++.... .....++.|+......+.++..
T Consensus 580 lr~~~~~aI~~l~~aGI~v~miTGD~~~t-------------A~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~ 646 (941)
T TIGR01517 580 LRPGVREAVQECQRAGITVRMVTGDNIDT-------------AKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKL 646 (941)
T ss_pred CchhHHHHHHHHHHCCCEEEEECCCChHH-------------HHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccC
Confidence 34567778899999999987776655432 2233456666543322222222
Q ss_pred -----CChhh----HHHHHhcCCeEEEChhhhccccccccHHHHHHcCCcEEEc
Q 019100 285 -----VNHTE----IGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLG 329 (346)
Q Consensus 285 -----~~~~~----i~~l~~~g~~v~~~p~~~~~l~~~~~~~~~~~~Gv~v~~G 329 (346)
++|++ +..+++.|-.|.++= .|..+.+.+.++.|-|++|
T Consensus 647 ~Vfar~sPe~K~~iV~~lq~~g~vVam~G------DGvNDapALk~AdVGIAmg 694 (941)
T TIGR01517 647 RVLARSSPLDKQLLVLMLKDMGEVVAVTG------DGTNDAPALKLADVGFSMG 694 (941)
T ss_pred eEEEECCHHHHHHHHHHHHHCCCEEEEEC------CCCchHHHHHhCCcceecC
Confidence 22322 333333333222111 4677888999998888876
No 264
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=20.11 E-value=5.1e+02 Score=21.53 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCCeEEEEeecccccCCHHHHHHHHHHHHHcCCeEEEEecCCh-hhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEec
Q 019100 205 DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP-YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV 283 (346)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~ 283 (346)
+|.+...+.+.+ ..+.+.++++.+.|+ +++++.|-.=+. .+.. + .++.+.++|+ ..++.+|.
T Consensus 87 dG~VfG~L~~dg--~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~---~-------al~~L~~lG~---~rVLTSGg 149 (201)
T PF03932_consen 87 DGFVFGALTEDG--EIDEEALEELIEAAG--GMPVTFHRAFDEVPDPE---E-------ALEQLIELGF---DRVLTSGG 149 (201)
T ss_dssp SEEEE--BETTS--SB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHH---H-------HHHHHHHHT----SEEEESTT
T ss_pred CeeEEEeECCCC--CcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHH---H-------HHHHHHhcCC---CEEECCCC
Confidence 555555555543 467888888888886 899999952111 1111 1 3444555555 56778887
Q ss_pred cCChhh-HHHHHh----cCCeEEEChhhhccccccccHHHHHH-cCCc
Q 019100 284 WVNHTE-IGLLSR----AGVKVSHCPASAMRMLGFAPIKEMLH-ADIC 325 (346)
Q Consensus 284 ~~~~~~-i~~l~~----~g~~v~~~p~~~~~l~~~~~~~~~~~-~Gv~ 325 (346)
..+..+ ++.|++ .+-.+.+.|.+= -...+++.+++ .|+.
T Consensus 150 ~~~a~~g~~~L~~lv~~a~~~i~Im~GgG---v~~~nv~~l~~~tg~~ 194 (201)
T PF03932_consen 150 APTALEGIENLKELVEQAKGRIEIMPGGG---VRAENVPELVEETGVR 194 (201)
T ss_dssp SSSTTTCHHHHHHHHHHHTTSSEEEEESS-----TTTHHHHHHHHT-S
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEecCC---CCHHHHHHHHHhhCCe
Confidence 755422 333333 233333334221 12357777766 6664
No 265
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=20.10 E-value=7.1e+02 Score=25.22 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEecCChhhHHHHHHhcCCCCCHHHHHHHcCCCCCCeeEEEeccCChhh----HHHHHhc
Q 019100 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE----IGLLSRA 296 (346)
Q Consensus 221 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~~~~~~----i~~l~~~ 296 (346)
..+..++.++.+++.|+++.+=-++....- ....++.|+.. + ++ .++|+| ++.+.+.
T Consensus 446 ~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA-------------~aIA~elGId~---v--~A-~~~PedK~~iV~~lQ~~ 506 (679)
T PRK01122 446 VKPGIKERFAELRKMGIKTVMITGDNPLTA-------------AAIAAEAGVDD---F--LA-EATPEDKLALIRQEQAE 506 (679)
T ss_pred CchhHHHHHHHHHHCCCeEEEECCCCHHHH-------------HHHHHHcCCcE---E--Ec-cCCHHHHHHHHHHHHHc
Confidence 456677889999999999876665554322 22344666631 2 22 255655 5566666
Q ss_pred CCeEEEChhhhccccccccHHHHHHcCCcEEEcCC
Q 019100 297 GVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTD 331 (346)
Q Consensus 297 g~~v~~~p~~~~~l~~~~~~~~~~~~Gv~v~~GTD 331 (346)
|-.|.++= .|..+.+.|..+.|-|++|+-
T Consensus 507 G~~VaMtG------DGvNDAPALa~ADVGIAMgsG 535 (679)
T PRK01122 507 GRLVAMTG------DGTNDAPALAQADVGVAMNSG 535 (679)
T ss_pred CCeEEEEC------CCcchHHHHHhCCEeEEeCCC
Confidence 65444322 577888889999888888753
Done!