Query 019102
Match_columns 346
No_of_seqs 127 out of 145
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:42:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04750 Far-17a_AIG1: FAR-17a 99.5 2E-13 4.3E-18 124.3 14.1 155 114-322 31-195 (201)
2 KOG3989 Beta-2-glycoprotein I 98.5 1.3E-06 2.9E-11 81.7 11.2 153 113-317 37-198 (224)
3 COG1755 Uncharacterized protei 56.2 1.3E+02 0.0028 27.5 9.7 101 240-340 44-171 (172)
4 KOG4740 Uncharacterized conser 30.6 3.8E+02 0.0083 28.9 9.9 102 33-148 301-403 (564)
5 PF12841 YvrJ: YvrJ protein fa 24.7 37 0.00079 23.4 0.8 17 37-53 6-22 (38)
6 PF03092 BT1: BT1 family; Int 18.5 5.3E+02 0.011 26.2 8.2 38 112-149 234-277 (433)
7 PF07782 DC_STAMP: DC-STAMP-li 18.0 2E+02 0.0043 26.0 4.5 32 309-340 147-181 (191)
8 PF05568 ASFV_J13L: African sw 17.9 86 0.0019 28.1 1.9 58 19-80 21-80 (189)
9 PRK15033 tricarballylate utili 17.3 2.4E+02 0.0051 29.1 5.2 63 264-329 235-299 (389)
10 PF05399 EVI2A: Ectropic viral 15.2 2.4E+02 0.0053 26.7 4.3 13 30-42 130-142 (227)
No 1
>PF04750 Far-17a_AIG1: FAR-17a/AIG1-like protein; InterPro: IPR006838 This entry includes the hamster androgen-induced FAR-17a protein (Q60534 from SWISSPROT) []. The function of these proteins is unknown but it is thought to have a central role in the fusion process during myogenesis, within the somatic mesoderm. This entry also includes homologous regions from a number of other metazoan proteins.; GO: 0016021 integral to membrane
Probab=99.52 E-value=2e-13 Score=124.31 Aligned_cols=155 Identities=22% Similarity=0.354 Sum_probs=110.9
Q ss_pred CCeEEEEechhhHHHHHHHHHHHHHHHHhhhhhhhcccCCCcccCcCCccccccccCCCccCCCCCCcccCCCchhhhcc
Q 019102 114 GGSIFYYYTQWTCTFTAIYFGLGSSLSMYGCYQYHKSLGGDKVDNVEGDAEQGICATPAVLGESSNSSAKHTSSREEFNA 193 (346)
Q Consensus 114 g~~~F~YyT~Wtf~LvtiYF~lgs~~S~~g~~~y~~~~~~~~v~~~~~d~e~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 193 (346)
-|+-|.|+|+|+..+.++||+++.+... +++ + +
T Consensus 31 ~gg~~~fLT~~~~~~~~~~~~~~~~~d~------~~~---~----------------------------~---------- 63 (201)
T PF04750_consen 31 YGGRFKFLTNWSLVLQTIYFILALLCDL------FSS---R----------------------------K---------- 63 (201)
T ss_pred hcCcceehhHHHHHHHHHHHHHHHHHHh------ccc---H----------------------------H----------
Confidence 4677899999999999999998777665 100 0 0
Q ss_pred cCCcchhhHH-HHHHHHHhhhhhhheeeeeeeeee--ccccccc-cc--c-cchhhhhhhHHHHHHHHHhhhccC--CCC
Q 019102 194 RRPAGFWGYV-FQIIFQMNAGAVLLTDCVFWFIIV--PFLEIKN-YS--L-NVLVINMHTINAVLLLGDAALNCL--RFP 264 (346)
Q Consensus 194 r~~a~~w~~~-~qilfqt~a~a~~LtdiVfW~iL~--p~l~~~~-~~--l-nf~ni~~H~lNaVflL~D~~Ln~l--Pfp 264 (346)
-... -+.+++++...+++++++||++.. |-+-.++ .. . ..+|+++|++|++++++|..+.+. |.+
T Consensus 64 ------l~~~~~~~~~~~~~pl~~~V~~~yW~l~~~dp~lv~p~~~~~~ip~wln~~~H~~~~i~llid~~~~~~~~~~~ 137 (201)
T PF04750_consen 64 ------LRKLRDWLFYSLAFPLEFIVTVVYWSLYLIDPELVFPKWLDNVIPLWLNHSMHTLPLIFLLIDLFLFKHRYPSR 137 (201)
T ss_pred ------HHHHHHHHHHHHHHHHHhcchhhhhhHHhCCHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch
Confidence 0001 235677888899999999999642 2111121 11 2 358999999999999999999885 555
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcccccceeecccCCCCCc-hhHHHHHHHHHHHHHHH
Q 019102 265 MFRIAYFFLWTVTYVIVQWAVHACVKIWWAYPFLDLSSPYA-PLWYFAVAVMHIPCYGV 322 (346)
Q Consensus 265 ~~hi~Y~vlwt~~YviF~~I~ha~g~~~w~YpFLD~~~p~a-plwy~~~a~~hi~cy~~ 322 (346)
..++......+.+|.+.....+.. .+.|||||||..++.. .+.+.+..++...+|.+
T Consensus 138 ~~~~~~~~~~~~~Y~~~~~~~~~~-~g~wpYPfl~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (201)
T PF04750_consen 138 KKALLISFAFGLAYIIWIEYIYYV-NGFWPYPFLDVLSPPGRVVFFAVSFLLAFLLYLL 195 (201)
T ss_pred HHHHHHHHHHHHHHHhheeEEEeC-CCeeCCCCcCCCCcchhheehHHHHHHHHHHHHH
Confidence 557888888899999887777766 3489999999877654 55566666666555544
No 2
>KOG3989 consensus Beta-2-glycoprotein I [Extracellular structures]
Probab=98.47 E-value=1.3e-06 Score=81.66 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=104.9
Q ss_pred cCCeEEEEechhhHHHHHHHHHHHHHHHHhhhhhhhcccCCCcccCcCCccccccccCCCccCCCCCCcccCCCchhhhc
Q 019102 113 DGGSIFYYYTQWTCTFTAIYFGLGSSLSMYGCYQYHKSLGGDKVDNVEGDAEQGICATPAVLGESSNSSAKHTSSREEFN 192 (346)
Q Consensus 113 ~g~~~F~YyT~Wtf~LvtiYF~lgs~~S~~g~~~y~~~~~~~~v~~~~~d~e~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 192 (346)
..|+-|.|+|--...+-.+|..+|.+.-.- ..+++.
T Consensus 37 ~~gg~f~ylT~i~l~lq~i~~~v~~~~dv~---g~~~~~----------------------------------------- 72 (224)
T KOG3989|consen 37 LNGGKFKYLTFIDLILQIIYYVVGLLNDVV---GRNSLT----------------------------------------- 72 (224)
T ss_pred hcCCceehHHHHHHHHHHHHHHHHHHHHHh---ccCccc-----------------------------------------
Confidence 367789999999999999999887766552 111100
Q ss_pred ccCCcchhhHHHHHHHHHhhhhhhheeeeeeee-------eecccccccccccchhhhhhhHHHHHHHHHhhhcc--CCC
Q 019102 193 ARRPAGFWGYVFQIIFQMNAGAVLLTDCVFWFI-------IVPFLEIKNYSLNVLVINMHTINAVLLLGDAALNC--LRF 263 (346)
Q Consensus 193 ~r~~a~~w~~~~qilfqt~a~a~~LtdiVfW~i-------L~p~l~~~~~~lnf~ni~~H~lNaVflL~D~~Ln~--lPf 263 (346)
.+...++ ..+..+....+.++++||++ ++|-..+.. ..+.+|+.+|....+++++|..... .|.
T Consensus 73 ~~~i~D~------l~~tlafPv~~~V~~~FW~Ly~~d~~Li~p~~l~~~-~p~wlnh~~Ht~~i~~~lld~~~~~~~~p~ 145 (224)
T KOG3989|consen 73 LHIIRDY------LAATLAFPVEVIVTVLFWGLYLYDRELLMPKVLDMV-IPSWLNHGLHTYPIPFILLDLYISGHTYPS 145 (224)
T ss_pred hhhhHHH------HHHHHhchHHHhhhhhhhhheeecHHHcCchhhhhc-CchhhhhHHHHHHHHHHHHHHHHhCCCCcc
Confidence 0001111 22445667789999999986 344322222 3377999999999999999999997 477
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhcccccceeecccCCCCCchhHHHHHHHHHH
Q 019102 264 PMFRIAYFFLWTVTYVIVQWAVHACVKIWWAYPFLDLSSPYAPLWYFAVAVMHI 317 (346)
Q Consensus 264 p~~hi~Y~vlwt~~YviF~~I~ha~g~~~w~YpFLD~~~p~aplwy~~~a~~hi 317 (346)
+.-+..-...+..+|.+.-...+..++ .|+|||||.-.+..-.-.++++.++.
T Consensus 146 r~~~l~~~~~f~~~Y~~~i~~v~~~~~-~WvYP~L~~~~~~~riif~~~a~~~~ 198 (224)
T KOG3989|consen 146 RSAGLTGIASFVTLYFIWIHYVYFYNG-FWVYPFLGVLAPYKRIIFFVVATLFV 198 (224)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccCC-EEeeccchhccchhHHHHHHHHHHHH
Confidence 887777778888888776555555434 79999999888765444444444443
No 3
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.23 E-value=1.3e+02 Score=27.47 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=72.1
Q ss_pred hhhhhhhHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHhhhcccc---------------cceeecccCCCC-
Q 019102 240 LVINMHTINAVLLLGDAALNCLRFPMFRIAYFFLWTVTYVIVQWAVHACVKI---------------WWAYPFLDLSSP- 303 (346)
Q Consensus 240 ~ni~~H~lNaVflL~D~~Ln~lPfp~~hi~Y~vlwt~~YviF~~I~ha~g~~---------------~w~YpFLD~~~p- 303 (346)
+-..+|.+=-+.+++|..+|...|+|..+.=+.+....+.+--|++|.-|.. .+||...---+=
T Consensus 44 ~l~ilH~~~yls~ivE~~~~~~~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYf 123 (172)
T COG1755 44 LLVILHTAFYLSCIVEAWLNNTFFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYF 123 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHH
Confidence 3477899999999999999999999999988999999999999999999763 466665532110
Q ss_pred --------CchhHHHH--HHHHHHHHHHHHHH-HHHHHhhhhhhcCCC
Q 019102 304 --------YAPLWYFA--VAVMHIPCYGVFAL-AIRLKHTLLSRWFPD 340 (346)
Q Consensus 304 --------~aplwy~~--~a~~hi~cy~~~~l-i~klK~~~l~~~~p~ 340 (346)
..|+-+-+ -+++..|||.++.. -+|--++.+...++.
T Consensus 124 lnIipEligl~Ll~~A~~Ta~l~~p~ya~~L~vRIr~EekaL~~~~~~ 171 (172)
T COG1755 124 LNIIPELIGLPLLCQAWYTALLFSPIYALLLYVRIRQEEKALAELFIK 171 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC
Confidence 11221111 34556678877655 566667777776654
No 4
>KOG4740 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=3.8e+02 Score=28.91 Aligned_cols=102 Identities=13% Similarity=0.214 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCccCCCCCCCCCCccccccccccCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhh
Q 019102 33 CAIWVLITMIFAFFIIWKYEGFRNSNRVTAETQQPEKAGFLYEDETWKPCLRGVHPAWLLAFRVLAFAVLLILLVATALF 112 (346)
Q Consensus 33 c~~~v~~~~~~a~~li~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~W~~c~~~ihP~wlL~yR~~~f~~~~~~li~~~~~ 112 (346)
|.+.--+--++.++.+||++++..++...++ ++.+...-|.+ -+-+.+++.=.++..+ .++.+..+..
T Consensus 301 ciVEySLI~Aai~fiiWk~i~~~~~~~~~~k--kK~~~R~DCs~---------t~~GlF~Gi~~li~s~-Isi~~~~il~ 368 (564)
T KOG4740|consen 301 CIVEYSLIAAAILFIIWKNIGRNPGESSKDK--KKHHIRFDCSG---------TSVGLFLGIALLIGSF-ISIALFNILC 368 (564)
T ss_pred HHHHHHHHHHHHHhheeeeccCCcccccchh--hcCccceecCC---------cchHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4444444444455889999998653221111 11122222222 1223444443333222 2333334443
Q ss_pred cCCeEEEEechhhHHHH-HHHHHHHHHHHHhhhhhhh
Q 019102 113 DGGSIFYYYTQWTCTFT-AIYFGLGSSLSMYGCYQYH 148 (346)
Q Consensus 113 ~g~~~F~YyT~Wtf~Lv-tiYF~lgs~~S~~g~~~y~ 148 (346)
+.++. =++++.+.-. +++|..+.+..+.|.++-+
T Consensus 369 ~~~~~--~~A~~v~~~~~l~~f~~a~la~l~~f~~mr 403 (564)
T KOG4740|consen 369 SEDNP--RAADYVVGITDLLLFVVALLACLFAFIRMR 403 (564)
T ss_pred cCCCc--hhhHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 3677777776 7778787777777776654
No 5
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=24.67 E-value=37 Score=23.41 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhcc
Q 019102 37 VLITMIFAFFIIWKYEG 53 (346)
Q Consensus 37 v~~~~~~a~~li~k~E~ 53 (346)
++.|+++|++|+-|-|+
T Consensus 6 ~GFPi~va~yLL~R~E~ 22 (38)
T PF12841_consen 6 VGFPIAVAIYLLVRIEK 22 (38)
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 67899999999999986
No 6
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=18.52 E-value=5.3e+02 Score=26.16 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=25.3
Q ss_pred hcCCeEEEEechhh------HHHHHHHHHHHHHHHHhhhhhhhc
Q 019102 112 FDGGSIFYYYTQWT------CTFTAIYFGLGSSLSMYGCYQYHK 149 (346)
Q Consensus 112 ~~g~~~F~YyT~Wt------f~LvtiYF~lgs~~S~~g~~~y~~ 149 (346)
.+++..|+|+|+.- ..-....-.+|++.++.|++.|++
T Consensus 234 ~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~ 277 (433)
T PF03092_consen 234 ISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRK 277 (433)
T ss_pred CCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566888888643 333344447888888888888864
No 7
>PF07782 DC_STAMP: DC-STAMP-like protein; InterPro: IPR012858 This group of sequences is similar to a region of the dendritic cell-specific transmembrane protein (DC-STAMP, Q9H295 from SWISSPROT). This is thought to be a novel receptor protein that shares no identity with other multimembrane-spanning proteins []. It is thought to have seven putative transmembrane regions [], two of which are found in the region featured in this family. DC-STAMP is also described as having potential N-linked glycosylation sites and a potential phosphorylation site for PKC [], but these are not conserved. ; GO: 0016021 integral to membrane
Probab=17.98 E-value=2e+02 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.588 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHhhhhhhcCCC
Q 019102 309 YFAVAVMHIPCYGVFAL---AIRLKHTLLSRWFPD 340 (346)
Q Consensus 309 y~~~a~~hi~cy~~~~l---i~klK~~~l~~~~p~ 340 (346)
|..+.++.+.++.+..+ ..||||.+....||+
T Consensus 147 ~~~i~~l~~l~~ll~~le~Y~~RLR~~I~a~fyP~ 181 (191)
T PF07782_consen 147 YIQIGLLYLLLWLLVLLEPYALRLRRVICASFYPE 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 55555555555555444 779999999999996
No 8
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=17.90 E-value=86 Score=28.11 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=28.2
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHHHHHhhhccCccCCCCCCCCCCcc--ccccccccCCcc
Q 019102 19 TTTSEYWLNWRVILCAIWVLITMIFAFFIIWKYEGFRNSNRVTAETQQPE--KAGFLYEDETWK 80 (346)
Q Consensus 19 ~~~~~ywl~w~~~~c~~~v~~~~~~a~~li~k~E~~~~~~~~~~~~~~~~--~~~~~~~~~~W~ 80 (346)
++.+|+.- --+|.+.|++.+....+++.-+=.++++++.-. +..+| .+...|+|++|-
T Consensus 21 ~~~psffs---thm~tILiaIvVliiiiivli~lcssRKkKaaA-Ai~eediQfinpyqDqqw~ 80 (189)
T PF05568_consen 21 VTPPSFFS---THMYTILIAIVVLIIIIIVLIYLCSSRKKKAAA-AIEEEDIQFINPYQDQQWA 80 (189)
T ss_pred CCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-hhhhhcccccCcccchhhc
Confidence 45556532 345666666555555544444444333332111 12222 345668888885
No 9
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=17.34 E-value=2.4e+02 Score=29.07 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHHHHHHHHH--HhhhcccccceeecccCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 019102 264 PMFRIAYFFLWTVTYVIVQW--AVHACVKIWWAYPFLDLSSPYAPLWYFAVAVMHIPCYGVFALAIRL 329 (346)
Q Consensus 264 p~~hi~Y~vlwt~~YviF~~--I~ha~g~~~w~YpFLD~~~p~aplwy~~~a~~hi~cy~~~~li~kl 329 (346)
|.+|..-+--+.+.++...+ +||..-+..-|||..++ ..-+|.++.+.+.+-.++++++..|+
T Consensus 235 r~~H~l~~yGFil~f~aT~va~~yh~~~~~~aPyp~~s~---~klLg~vGgi~LliG~~gl~~~~~R~ 299 (389)
T PRK15033 235 RRFHHLTFYGFMLCFAATVVATLYHYVLGWHAPYPFFSL---PVLLGTLGGIGLLIGPAGLLWLNLRR 299 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCcccH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666655444555554444 46764344567776543 44667777777776777766655444
No 10
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=15.15 E-value=2.4e+02 Score=26.73 Aligned_cols=13 Identities=15% Similarity=0.713 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHH
Q 019102 30 VILCAIWVLITMI 42 (346)
Q Consensus 30 ~~~c~~~v~~~~~ 42 (346)
.++|.|++++-++
T Consensus 130 mLIClIIIAVLfL 142 (227)
T PF05399_consen 130 MLICLIIIAVLFL 142 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 4666666554433
Done!