Query 019102
Match_columns 346
No_of_seqs 127 out of 145
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mk7_C Cytochrome C oxidase, C 48.6 69 0.0024 29.7 8.9 58 35-101 11-68 (311)
2 2knc_A Integrin alpha-IIB; tra 30.7 85 0.0029 22.3 4.8 32 28-59 13-44 (54)
3 2l8s_A Integrin alpha-1; trans 26.9 91 0.0031 22.2 4.4 33 28-60 10-42 (54)
4 4f4l_A ION transport protein; 13.4 1.1E+02 0.0037 24.1 2.6 48 7-55 51-98 (112)
5 2l2t_A Receptor tyrosine-prote 8.5 4.4E+02 0.015 17.7 3.9 13 39-51 24-36 (44)
6 2k1a_A Integrin alpha-IIB; sin 7.7 5.2E+02 0.018 17.1 4.4 29 28-56 11-39 (42)
7 2ks1_B Epidermal growth factor 7.6 5E+02 0.017 17.4 3.8 15 37-51 23-37 (44)
8 3rko_J NADH-quinone oxidoreduc 7.4 3.2E+02 0.011 23.8 3.6 27 23-51 136-162 (184)
9 1ok0_A Tendamistat, alpha-amyl 4.7 1.2E+02 0.0039 22.8 -0.8 21 68-89 31-51 (74)
10 2ker_A Parvulustat, alpha-amyl 4.6 1.3E+02 0.0043 22.8 -0.6 21 68-89 29-49 (78)
No 1
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=48.63 E-value=69 Score=29.68 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhhccCccCCCCCCCCCCccccccccccCCcccccCCCChhHHHHHHHHHHHH
Q 019102 35 IWVLITMIFAFFIIWKYEGFRNSNRVTAETQQPEKAGFLYEDETWKPCLRGVHPAWLLAFRVLAFAV 101 (346)
Q Consensus 35 ~~v~~~~~~a~~li~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~W~~c~~~ihP~wlL~yR~~~f~~ 101 (346)
++++.++++-++||+.+-.. +. ++ ...++-|+-+|. -.-+.+.-|.|++..=.+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~---~~--~~-~~~~~~~h~~dg---i~e~~nplp~ww~~~f~~~iv~ 68 (311)
T 3mk7_C 11 LLTLGTIVALFWLIFATRKG---ES--AG-TTDQTMGHAFDG---IEEYDNPLPRWWFLLFIGTLVF 68 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTTT---CC--SS-CCCCCCSCCBTT---BCBCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcc---cC--CC-CCCCCCCCCccC---hhhccCCCChHHHHHHHHHHHH
Confidence 44566677777788776322 11 11 113455666653 2334566677775543333333
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.67 E-value=85 Score=22.28 Aligned_cols=32 Identities=19% Similarity=0.481 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCccCCC
Q 019102 28 WRVILCAIWVLITMIFAFFIIWKYEGFRNSNR 59 (346)
Q Consensus 28 w~~~~c~~~v~~~~~~a~~li~k~E~~~~~~~ 59 (346)
|...+.++--++..++-.+++||--++++++.
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 44444444444444455677898877765444
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=26.95 E-value=91 Score=22.17 Aligned_cols=33 Identities=21% Similarity=0.550 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCccCCCC
Q 019102 28 WRVILCAIWVLITMIFAFFIIWKYEGFRNSNRV 60 (346)
Q Consensus 28 w~~~~c~~~v~~~~~~a~~li~k~E~~~~~~~~ 60 (346)
|...+.++--++..++-.+++||--++++++++
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~ 42 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcc
Confidence 445554444444445556778998877655543
No 4
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=13.39 E-value=1.1e+02 Score=24.11 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=24.4
Q ss_pred CCCccccccccCCCCcccccchhhHHHHHHHHHHHHHHHHHHhhhccCc
Q 019102 7 SKVSWHPALTVDTTTSEYWLNWRVILCAIWVLITMIFAFFIIWKYEGFR 55 (346)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ywl~w~~~~c~~~v~~~~~~a~~li~k~E~~~ 55 (346)
+.+.|.+.|..+.. ..++..|-+++..+.+..-+++-+++=.=-|...
T Consensus 51 T~e~W~~~~~~~~~-~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~ 98 (112)
T 4f4l_A 51 TLESWSMGIVRPVM-NVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMA 98 (112)
T ss_dssp TTTTCCCCCHHHHT-TTSTTTHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HccccHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668765543322 2334456677777777666666665443334333
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.46 E-value=4.4e+02 Score=17.71 Aligned_cols=13 Identities=8% Similarity=0.196 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhh
Q 019102 39 ITMIFAFFIIWKY 51 (346)
Q Consensus 39 ~~~~~a~~li~k~ 51 (346)
+.++++.++.+|+
T Consensus 24 ~ii~~~~~~~~RR 36 (44)
T 2l2t_A 24 VIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhh
Confidence 3444555666665
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=7.75 E-value=5.2e+02 Score=17.11 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCcc
Q 019102 28 WRVILCAIWVLITMIFAFFIIWKYEGFRN 56 (346)
Q Consensus 28 w~~~~c~~~v~~~~~~a~~li~k~E~~~~ 56 (346)
|...+.++--++-.++-.+++||--++++
T Consensus 11 wiIi~s~l~GLllL~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 44444444444444455577898876653
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.56 E-value=5e+02 Score=17.36 Aligned_cols=15 Identities=7% Similarity=0.255 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhh
Q 019102 37 VLITMIFAFFIIWKY 51 (346)
Q Consensus 37 v~~~~~~a~~li~k~ 51 (346)
+++.++++.++.+|+
T Consensus 23 ~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 23 LLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhh
Confidence 334444555666665
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=7.39 E-value=3.2e+02 Score=23.77 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=20.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhh
Q 019102 23 EYWLNWRVILCAIWVLITMIFAFFIIWKY 51 (346)
Q Consensus 23 ~ywl~w~~~~c~~~v~~~~~~a~~li~k~ 51 (346)
+|++ +|=+..+..+++|++|..+-+|.
T Consensus 136 ~Y~l--pFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 136 PYVL--AVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp TSHH--HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 5665 57788888999999988775543
No 9
>1ok0_A Tendamistat, alpha-amylase inhibitor HOE-467A; 0.93A {Streptomyces tendae} SCOP: b.5.1.1 PDB: 1bvn_T 1hoe_A 2ait_A 3ait_A 4ait_A
Probab=4.67 E-value=1.2e+02 Score=22.84 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=15.3
Q ss_pred cccccccccCCcccccCCCChh
Q 019102 68 EKAGFLYEDETWKPCLRGVHPA 89 (346)
Q Consensus 68 ~~~~~~~~~~~W~~c~~~ihP~ 89 (346)
....+.|++.+|-||. .++|+
T Consensus 31 vsVtV~Y~dG~~~PCr-v~~PG 51 (74)
T 1ok0_A 31 VTVKVVYEDDTEGLCY-AVAPG 51 (74)
T ss_dssp EEEEEEETTSCBCCCE-EECTT
T ss_pred EEEEEEEeCCCcceeE-EeCCC
Confidence 3556789999999997 34553
No 10
>2ker_A Parvulustat, alpha-amylase inhibitor Z-2685; parvulustat (Z-2685), hydrolase inhibitor; NMR {Streptomyces parvulus}
Probab=4.64 E-value=1.3e+02 Score=22.83 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=15.6
Q ss_pred cccccccccCCcccccCCCChh
Q 019102 68 EKAGFLYEDETWKPCLRGVHPA 89 (346)
Q Consensus 68 ~~~~~~~~~~~W~~c~~~ihP~ 89 (346)
....+.|++.+|-||. .++|+
T Consensus 29 vsVtV~Y~dG~~~PCr-v~~PG 49 (78)
T 2ker_A 29 VSVTVEYTHGQWAPCR-VIEPG 49 (78)
T ss_dssp EEEEEEESSCCSCCCE-EECTT
T ss_pred EEEEEEEeCCCcceeE-EeCCC
Confidence 3556789999999997 45554
Done!