Query 019102
Match_columns 346
No_of_seqs 127 out of 145
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 10:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019102.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019102hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 14.0 92 0.0067 22.0 4.2 28 26-53 3-31 (103)
2 d1ok0a_ b.5.1.1 (A:) alpha-Amy 9.3 19 0.0014 25.2 -1.2 22 68-90 31-52 (74)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 8.3 1.9E+02 0.014 18.7 3.9 28 26-53 3-31 (57)
4 d1jb0x_ f.23.20.1 (X:) Subunit 6.6 1.6E+02 0.011 16.5 2.2 18 120-137 5-22 (29)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 5.9 1.6E+02 0.012 24.3 3.1 14 30-43 186-199 (447)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 4.4 1.7E+02 0.013 24.0 2.3 26 28-53 411-436 (447)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 4.3 68 0.0049 22.7 -0.6 20 32-51 24-43 (91)
8 d1ydxa2 d.287.1.2 (A:194-374) 3.7 1.8E+02 0.013 21.4 1.5 20 321-340 160-179 (181)
9 d1pv7a_ f.38.1.2 (A:) Lactose 3.6 1E+02 0.0075 24.6 -0.1 28 27-55 379-406 (417)
10 d1oeda_ f.36.1.1 (A:) Acetylch 3.3 3.7E+02 0.027 20.9 3.3 34 26-59 64-97 (227)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.96 E-value=92 Score=22.04 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=19.4
Q ss_pred cchhhHHHHHHHHHH-HHHHHHHHhhhcc
Q 019102 26 LNWRVILCAIWVLIT-MIFAFFIIWKYEG 53 (346)
Q Consensus 26 l~w~~~~c~~~v~~~-~~~a~~li~k~E~ 53 (346)
|+||.+..++++++. ++..+.+++--|+
T Consensus 3 l~~r~~~~~~~~~~~~~~~~s~~~~~~e~ 31 (103)
T d1r3jc_ 3 LHWRAAGAATVLLVIVLLAGSYLAVLAER 31 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999887776665 4455566776664
No 2
>d1ok0a_ b.5.1.1 (A:) alpha-Amylase inhibitor tendamistat {Streptomyces tendae [TaxId: 1932]}
Probab=9.31 E-value=19 Score=25.24 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=16.7
Q ss_pred cccccccccCCcccccCCCChhH
Q 019102 68 EKAGFLYEDETWKPCLRGVHPAW 90 (346)
Q Consensus 68 ~~~~~~~~~~~W~~c~~~ihP~w 90 (346)
....+.|++.+|-||. .+.|++
T Consensus 31 vsVtV~Y~dG~~~PCr-~~~PG~ 52 (74)
T d1ok0a_ 31 VTVKVVYEDDTEGLCY-AVAPGQ 52 (74)
T ss_dssp EEEEEEETTSCBCCCE-EECTTC
T ss_pred EEEEEEEeCCCcceee-eeCCCc
Confidence 3566789999999998 456665
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.34 E-value=1.9e+02 Score=18.69 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=19.2
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHHhhhcc
Q 019102 26 LNWRVILCAIWVLI-TMIFAFFIIWKYEG 53 (346)
Q Consensus 26 l~w~~~~c~~~v~~-~~~~a~~li~k~E~ 53 (346)
++||-+.+++.+.+ .+++++.++.--|+
T Consensus 3 ~~~R~~~~~~~~~~i~i~~~s~~~y~~E~ 31 (57)
T d2h8pc1 3 LHWRAAGAATVLLVIVLLAGSYLAVLAER 31 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58998887766554 44556777777774
No 4
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=6.62 E-value=1.6e+02 Score=16.47 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=13.6
Q ss_pred EechhhHHHHHHHHHHHH
Q 019102 120 YYTQWTCTFTAIYFGLGS 137 (346)
Q Consensus 120 YyT~Wtf~LvtiYF~lgs 137 (346)
|=|-|...|+.|-|+.++
T Consensus 5 frt~wa~lllainflvaa 22 (29)
T d1jb0x_ 5 FRTFWAVLLLAINFLVAA 22 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 347788888888887654
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.94 E-value=1.6e+02 Score=24.25 Aligned_cols=14 Identities=14% Similarity=0.429 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q 019102 30 VILCAIWVLITMIF 43 (346)
Q Consensus 30 ~~~c~~~v~~~~~~ 43 (346)
+.+.++..++..++
T Consensus 186 ~~~~~~~~~~~~~~ 199 (447)
T d1pw4a_ 186 LYMPAFCAILVALF 199 (447)
T ss_dssp THHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHH
Confidence 44444444333333
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.45 E-value=1.7e+02 Score=24.02 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcc
Q 019102 28 WRVILCAIWVLITMIFAFFIIWKYEG 53 (346)
Q Consensus 28 w~~~~c~~~v~~~~~~a~~li~k~E~ 53 (346)
.-+.++++..+++.++...+..|.|+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 411 GGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34566666666666665555555443
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.30 E-value=68 Score=22.69 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 019102 32 LCAIWVLITMIFAFFIIWKY 51 (346)
Q Consensus 32 ~c~~~v~~~~~~a~~li~k~ 51 (346)
++++....-..+-++.+|||
T Consensus 24 i~~iv~v~V~~~~~~~~~ry 43 (91)
T d1fftb2 24 LMLIVVIPAILMAVGFAWKY 43 (91)
T ss_dssp HTTTTTTHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHhhheee
Confidence 44444445555556778998
No 8
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=3.68 E-value=1.8e+02 Score=21.42 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhhhhhcCCC
Q 019102 321 GVFALAIRLKHTLLSRWFPD 340 (346)
Q Consensus 321 ~~~~li~klK~~~l~~~~p~ 340 (346)
-..--+-.+|+.+++++||+
T Consensus 160 ~~i~~l~~lk~~Ll~~lF~~ 179 (181)
T d1ydxa2 160 KELSSLTVIRDTLLKKLFPD 179 (181)
T ss_dssp HHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33444778999999999997
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.62 E-value=1e+02 Score=24.65 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=16.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccCc
Q 019102 27 NWRVILCAIWVLITMIFAFFIIWKYEGFR 55 (346)
Q Consensus 27 ~w~~~~c~~~v~~~~~~a~~li~k~E~~~ 55 (346)
++-++++++..++..+++.+++. ++++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 406 (417)
T d1pv7a_ 379 QGAYLVLGLVALGFTLISVFTLS-GPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCCcc
Confidence 34466777777777776666664 43333
No 10
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.30 E-value=3.7e+02 Score=20.86 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCccCCC
Q 019102 26 LNWRVILCAIWVLITMIFAFFIIWKYEGFRNSNR 59 (346)
Q Consensus 26 l~w~~~~c~~~v~~~~~~a~~li~k~E~~~~~~~ 59 (346)
+-+.+..|.+.+.++++.+++++.-+.+..+.++
T Consensus 64 i~~y~~~~~~~v~~sli~tiiV~~l~~~~~~~~~ 97 (227)
T d1oeda_ 64 IGKYMLFTMIFVISSIIITVVVINTHHRSPSTHT 97 (227)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cchHHHHHHHHHHHHHHHHHHHhheeccCCCCCC
Done!