BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019103
         (346 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q84WV9|QPCT_ARATH Glutaminyl-peptide cyclotransferase OS=Arabidopsis thaliana GN=QCT
           PE=1 SV=1
          Length = 320

 Score =  362 bits (929), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/347 (56%), Positives = 236/347 (68%), Gaps = 32/347 (9%)

Query: 1   MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
           M +RS  K+ +KRS+ QS  PA S + S     S     M              IP  +L
Sbjct: 1   MATRSPYKRQTKRSMIQS-LPASSSASSRRRFISRKRFAMM-------------IPLALL 46

Query: 61  ---IFFFLCGFVLLCISSNMWIRFPG--VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN 115
              +F F   F       N W +  G  +D S  I  I+VV EFPHDP AFTQGLLYA N
Sbjct: 47  SGAVFLFFMPF-------NSWGQSSGSSLDLSHRINEIEVVAEFPHDPDAFTQGLLYAGN 99

Query: 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175
           DTLFESTGLYG+SSVR+V L TGKVE + +M+ +YFGEGLTLLGE+LFQV WL  TGF Y
Sbjct: 100 DTLFESTGLYGKSSVRKVDLRTGKVEILEKMDNTYFGEGLTLLGERLFQVAWLTNTGFTY 159

Query: 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235
           D  NL+K++ F H MKDGWGLATDGK LFGSDG+S LY++DPQT+KV  K IVRY GREV
Sbjct: 160 DLRNLSKVKPFKHHMKDGWGLATDGKALFGSDGTSTLYRMDPQTMKVTDKHIVRYNGREV 219

Query: 236 RNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGI 295
           R LNELE+I  EVWANVWQ+DCIARIS +DG +LGW+LL  L   L+ +G+ GIDVLNGI
Sbjct: 220 RYLNELEYINNEVWANVWQSDCIARISPKDGSLLGWILLSKLSRGLLKSGHRGIDVLNGI 279

Query: 296 AWDSNRNRIFVTGKLWPKLYEINLREMKRERKDGFNVDTIIEQLCLL 342
           AWDS++ R+FVTGKLWPKLY+I L++   +  +       IEQ CL+
Sbjct: 280 AWDSDKQRLFVTGKLWPKLYQIKLKQASAKSGN------YIEQQCLV 320


>sp|Q01578|GNL_ZYMMO Gluconolactonase OS=Zymomonas mobilis subsp. mobilis (strain ATCC
           31821 / ZM4 / CP4) GN=gnl PE=1 SV=2
          Length = 356

 Score = 33.5 bits (75), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 20/133 (15%)

Query: 185 EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV-RYKGREVRNLNELEF 243
           +F     +G  +  DGK+     G+  + ++DP T +  R  +V  YKG+   + N+L F
Sbjct: 123 QFREPGSNGMKVGPDGKIWVADSGTRAIMKVDPVTRQ--RSVVVDNYKGKRFNSPNDLFF 180

Query: 244 IK-GEVW--------ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNG 294
            K G V+         N+ ++D I  +++ +GV   + L P+ R  L+ A   G+   NG
Sbjct: 181 SKSGAVYFTDPPYGLTNLDESD-IKEMNY-NGV---FRLSPDGRLDLIEA---GLSRPNG 232

Query: 295 IAWDSNRNRIFVT 307
           +A   +  +++V+
Sbjct: 233 LALSPDETKLYVS 245


>sp|P57331|BAMA_BUCAI Outer membrane protein assembly factor BamA OS=Buchnera aphidicola
           subsp. Acyrthosiphon pisum (strain APS) GN=bamA PE=3
           SV=1
          Length = 617

 Score = 32.7 bits (73), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 16/70 (22%)

Query: 143 INQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF-------THQMKDGWG 195
           I QMEG YF   L  LG+KL     L+KT +  D   + KL  +       T+Q+K+   
Sbjct: 369 IKQMEGKYFNTKLVELGKKL-----LEKTKYFSDVKIIQKLNSYDSNQIDITYQVKE--- 420

Query: 196 LATDGKVLFG 205
             T G + FG
Sbjct: 421 -QTTGSINFG 429


>sp|P29122|PCSK6_HUMAN Proprotein convertase subtilisin/kexin type 6 OS=Homo sapiens
           GN=PCSK6 PE=1 SV=1
          Length = 969

 Score = 32.0 bits (71), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 201 KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDC--- 257
           +    S G     ++DPQ   + ++++ R   R+VR+  +  +    +W+N+W   C   
Sbjct: 117 RSTLSSRGPHTFLRMDPQVKWLQQQEVKRRVKRQVRSDPQALYFNDPIWSNMWYLHCGDK 176

Query: 258 IARISHEDGVVLGW 271
            +R   E  V   W
Sbjct: 177 NSRCRSEMNVQAAW 190


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,936,686
Number of Sequences: 539616
Number of extensions: 5846122
Number of successful extensions: 34284
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 32993
Number of HSP's gapped (non-prelim): 1036
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)